BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 537021.9.peg.410_1 (952 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|325291476|ref|YP_004277340.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] gi|325059329|gb|ADY63020.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] Length = 1185 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 357/963 (37%), Positives = 542/963 (56%), Gaps = 27/963 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ + E+ E WPLP ++ Y++L+ E G ++ A L++A + Sbjct: 237 LRQAMQIDAGETEETAAAAFWPLPGLSGLSLDTYLTLADEVGGSRVIDVAYALREAKRQT 296 Query: 61 CIEERFSLLSSFFLTQKFTPQKNII--TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R + + LT K + + + + K +PDL + L ++D + R+R+ + Sbjct: 297 DSVRRMEFIEAALLTAKGEKKSDAYVINKGMQKSAPDLVDALTLARDHVVACRNRYRLVR 356 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M ++T +L LA+ L +E+ KK+ LDFEDLI +LL + AW+ YK+DQ I+ Sbjct: 357 MLEATKCALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGID 416 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS +QW +I+SL DFF G++ RTLFAVGDEKQSIYSF GA P+R Sbjct: 417 HILVDEAQDTSPVQWSIIQSLAADFFSGESARMGRRTLFAVGDEKQSIYSFQGARPERFS 476 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 +E+ ++R + Q F I LPLSFRST D+L VD+VFS P+NA GLS D+ + HR Sbjct: 477 QERDETKRRVDSVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNE-PVEHR 535 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 S+R G GTV++W+ V + +E WT+ FD+L + + A+I+ARRIA I+ MIG Sbjct: 536 SNRAGHPGTVEVWDMVAP----ETAEDEEDWTAPFDALRESAPATIVARRIAARIAGMIG 591 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 TI G +R I+ DILVLVRKR + LTR LK I V G DR LTDH+A+ Sbjct: 592 NQTIIEKGVERAIEPGDILVLVRKRH--AFVNALTRELKRRKNIPVAGADRLRLTDHIAV 649 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF++ EDDLS +LKSPLFN SEDD+F + R +TE+V++ +Q + Sbjct: 650 QDLLALGRFVVLPEDDLSLAALLKSPLFNLSEDDVFDVAATRSDTESVWQRLQTLSQDEN 709 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 S+F V + I +++ + HDFF +L GR++F+ R GNE DVLDEFL+F L Sbjct: 710 SRFSVVANKLKNFIALSKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALD 769 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E+ LQ +S LE P +KR + EVRIMTVH +KGLE+PVVF+VD GS+ F Sbjct: 770 HERTGLPGLQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAF 829 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K+ + + D P+W+P S N+++ + LK + ++EY RLLYV MTRA Sbjct: 830 NHSHVPKLRFVEA--DGDAFPVWLPGSGFSNHLIRADEERLKTAAEDEYRRLLYVAMTRA 887 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D L++C + K N W+ +V + ++E + +EW W Sbjct: 888 ADHLVVCGYRGQ----KENPECWHAIVKTALADNE-KHCQPQQFMADGEEWQGLVWRKSD 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTNLESL 773 +TP + Q +E +P L +P+ + P L+PS D + S Sbjct: 943 ARSTPAPQRLPEPQTQEEYALPAGLLTPLPALPSLPRPLSPSGAGTIIDDGADDLAVRSP 1002 Query: 774 LSDNQ------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 L + RG ++H++LQ + E +R+ Y + A+ WP+ E ++L+ + Sbjct: 1003 LFGEKADVSSLALQRGRLVHRMLQALPDFAESEREEAARRYAERAARFWPSAEREHLIRA 1062 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 + R++ P + A S +S +EVS+ G + ++ +SGRID++++ + + +YKT+ Sbjct: 1063 VLRVMSEPAVQPAFSPNSRAEVSIMGTMTIGRQHYAVSGRIDRLAVDGDRVILVDYKTNR 1122 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 P++ IP++H AQL+IY +IL YP K VC LIY + + + +A A I Sbjct: 1123 VPPRDAHEIPFSHTAQLAIYREILSPLYPGKEFVCALIYTENAAFMTVGDDAMMQALAAI 1182 Query: 948 STK 950 TK Sbjct: 1183 KTK 1185 >gi|241206969|ref|YP_002978065.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860859|gb|ACS58526.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1183 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 372/962 (38%), Positives = 552/962 (57%), Gaps = 25/962 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ R GL+ ++ + I WPLP + Y+SL+ + G + A L+ + + Sbjct: 235 LRKRLGLAAGDTEDRIAAQYWPLPALSGGTLELYLSLADQKGGAKAQEVAYGLRLTGRER 294 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R +L FLT K P+ + + + ++P L E + ++ RDR + Sbjct: 295 DDARRAEILEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIAIARAHVAASRDRLKLMR 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M+ +T A+L LA LN YEE KK+ LDFEDLI T DLL K V WI YK+D+ I+ Sbjct: 355 MYGATHAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS IQW VI+SL EDFF G++ RTLFAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 E ++R +++GQ FS + LPLSFRSTAD+L VD +F PENA+GLS + HR Sbjct: 475 EESDRTRRRVSDSGQSFSTVRLPLSFRSTADVLEAVDHIFKAPENARGLSALGE-PVVHR 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 SSRIG G V LWE V + ++E WT+ FD+ P+ + A+ILARRIA++I +++G Sbjct: 534 SSRIGHPGAVDLWEMVAP----EAVMKEEDWTAPFDATPESAPAAILARRIAHSIGSLVG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +TI GK+R I+A DILVLVRKR + LTR LK I V G DR +LT H+A+ Sbjct: 590 RETIVDKGKERPIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPLF+ SEDDIF + R + ++V+ +++ FA G Sbjct: 648 QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAVAALRGDNQSVWSHLKSFAADGT 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +F+ ++ + + ++ S HDF+ +LG+ GR+QF++R G EV D+LDEFL FTL Sbjct: 708 ERFRAAVERLELFLRQSRSLSVHDFYARVLGSYGGRRQFLARLGTEVSDILDEFLTFTLD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E + LQ IS LE P +KR NEVRIMTVH +KGLE+P+VFLVD GS+ F Sbjct: 768 HETSGLPGLQSFISTLELEAPVMKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K+ ++ + D+P +P+W+P S N++ D ++ +EEY RLLYV MTRA Sbjct: 828 THTHLPKLRLIETGPDEPPMPVWVPVSDLANSLTQDDAARIQMLAEEEYRRLLYVAMTRA 887 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D+L++C + + N TW+ M+ + D+ T S EW +W Sbjct: 888 ADRLVVCGYRGV----RVNNDTWHMMISTA-LRDDHPHVEATTFSGPDGEWPGIKWRVPR 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769 E + ER ++ E+ +P L P+ P L+PS T + Sbjct: 943 VERS-FERIGRSEERGSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDAGGLLVVSP 1001 Query: 770 -LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 +++ +G +IH++LQ + +P +R + + Y + A+ WP E + L+ S+ Sbjct: 1002 LFGETERSDRSLEKGRLIHRMLQALPEIPLAERPDAASRYAERAARFWPEAERRKLVDSV 1061 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +LL+ + + + EVS+ G + + +SGRID++++ + I +YKT+ Sbjct: 1062 LKLLDEEGLQAVLGAQAQPEVSIMGTLTLEDRRYAVSGRIDRLAVLADRVVILDYKTNRV 1121 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P E IP+ H AQL+IY +IL Y ++ + C+L+Y +F + + L A A + Sbjct: 1122 PPATEEAIPFAHRAQLAIYREILTPLYADRRIDCMLVYTENASLFTLSEKALGLALAAVK 1181 Query: 949 TK 950 TK Sbjct: 1182 TK 1183 >gi|86355694|ref|YP_467586.1| nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42] gi|45505284|gb|AAS67014.1| AddA [Rhizobium etli] gi|86279796|gb|ABC88859.1| probable nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42] Length = 1183 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 369/962 (38%), Positives = 548/962 (56%), Gaps = 25/962 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L++R GL+ ++ I WPLP + Y+SL+ + G + A L+ A + + Sbjct: 235 LRDRLGLAAGDTESRIAAQYWPLPELSGRILELYLSLADQKGGAKAQEVAYGLRLAGRER 294 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + R +L FLT K P+ + + + + ++P L + ++ RDR + Sbjct: 295 DDDRRAEMLEKIFLTAKGEPKSDSQFLVKAMLAEAPQLTSAIAVARAHVAASRDRLKMMR 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 MF +T A+L LA LN YEE KK+ LDFEDLI T DLL K V WI YK+D+ I+ Sbjct: 355 MFGATQAALVLAGRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS IQW VI+SL EDFF G++ RTLFAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPGVRTLFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 E ++R +++G FS + LPLSFRSTAD+L VD++F +NA+GLS + HR Sbjct: 475 EESDRTRRRVSDSGLSFSSVRLPLSFRSTADVLEAVDEIFRTSDNARGLSAVGE-PVVHR 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 SSRIG G V LWE V + ++E WT+ FD+ P+ + A+ILARRIA++I ++G Sbjct: 534 SSRIGHPGAVDLWEVVAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +TI GK+R+I+A DILVLVRKR + LTR LK I V G DR LT H+A+ Sbjct: 590 RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLTLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPLF+ SEDDIF I R + E+V+ ++++FA G Sbjct: 648 QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAGLRDDNESVWSHLKRFAADGT 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +F+ ++ + + ++ S HDF+ +LG+ GR+QF++R G EV D+LDEFL FTL Sbjct: 708 ERFRAAVERLELFLRQSRHLSVHDFYARVLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E + LQ IS LE P +KR NEVRIMTVH +KGLE+P+VFLVD GS+ F Sbjct: 768 HESSGLPGLQSFISTLELEAPEVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKPF 827 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K+ ++ + D+P +P W+P S N++ + ++ +EEY RLLYV MTRA Sbjct: 828 THTHLPKLRLIETDADEPPLPAWVPVSDLANSLTQNDAARIQMLAEEEYRRLLYVAMTRA 887 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D+L++C + + + + + E T S EW W Sbjct: 888 ADRLVVCGYRGVRVNNDTWHMMISTALSEGHPHVEAA-----TFSGPDGEWPGIRWRVPR 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------KGKTN 769 E ER + + ++ +P+ L P+ P L+PS T + Sbjct: 943 VERR-FERIDRSEAHDSQEALPEGLSRPLPPQAELPRPLSPSGAGTIVDEDEGSLFVASP 1001 Query: 770 LESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 L + + +G +IH++LQ + +P +R + + Y + A+LWP E + L+ S+ Sbjct: 1002 LFGEKERSDHSLEKGRLIHRMLQALPDIPPVERPDAASRYAERAARLWPEAERRRLVDSV 1061 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +L++ + + ++ EVS+ G + + +SGRID++++ I I +YKT+ Sbjct: 1062 VKLMDEEGLQPVLGAEARPEVSIMGTLTLEDRRYAVSGRIDRLAVLADRIVILDYKTNRV 1121 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P E IP+ H AQL+IY +IL YP K + C+L+Y ++ + + L A A + Sbjct: 1122 PPSTEEAIPFAHKAQLAIYREILAPLYPGKRIDCMLVYTENASLYTLSEKALGLALAGLK 1181 Query: 949 TK 950 TK Sbjct: 1182 TK 1183 >gi|116249792|ref|YP_765630.1| ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv. viciae 3841] gi|115254440|emb|CAK05514.1| putative ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 1183 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 375/962 (38%), Positives = 556/962 (57%), Gaps = 25/962 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ R GL++ ++ + I WPLP S + Y+SL+ + G + A L+ A + + Sbjct: 235 LRKRLGLAVGDTEDRIEAQYWPLPELSGSVLELYLSLADQKGGAKAQEVAYGLRLAGRER 294 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R L FLT K P+ + + + ++P L E + ++ RDR + Sbjct: 295 DDARRAQFLEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIAIARAHVAASRDRLKLMR 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M+ +T A+L LA LN YEE KK+ LDFEDLI T DLL K V WI YK+D+ I+ Sbjct: 355 MYGATHAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS IQW VI+SL EDFF G++ RTLFAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 E ++R +++GQ FS + LPLSFRSTAD+L VD +F PENA+GLS + HR Sbjct: 475 EESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFKTPENARGLSALGE-PVVHR 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 SSRIG G V LWE + + ++E WT+ FD+ P+ + A+ILARRIA++I ++G Sbjct: 534 SSRIGHPGAVDLWEMIAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +TI GK+R+I+A DILVLVRKR + LTR LK I V G DR +LT H+A+ Sbjct: 590 RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPLF+ SEDDIF I R + E+ + +++ FA G Sbjct: 648 QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESFWSHLRSFAADGT 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 F+ ++ + + ++ S HDF+ +LG+ GR+QF++R G EV D+LDEFL FTL Sbjct: 708 ELFRAAVERLELFLRQSRSLSVHDFYARVLGSYGGRRQFLARLGTEVSDILDEFLTFTLD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E + LQ IS LE P +KR NEVRIMTVH +KGLE+P+VFLVD GS+ F Sbjct: 768 HESSGLPGLQSFISTLELEAPVMKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K+ ++ + D+P +P+W+P S N++ D ++ +EEY RLLYV MTRA Sbjct: 828 THTHLPKLRLIETRPDEPPMPVWVPVSDLANSLTQDDAARIQMLAEEEYRRLLYVAMTRA 887 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D+L++C + + N TW+ M+ + +D+ T S + EW +W Sbjct: 888 ADRLVVCGYRGV----RVNNDTWHMMISTA-LHDDHPHVEATTFSGSDGEWPGIKWRVPR 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769 E + ER + ++ E+ +P L P+ P L+PS T + Sbjct: 943 VERS-FERIDRSQERGSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLLVVSP 1001 Query: 770 -LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 +++ +G +IH++LQ + +P +R + + Y + A+ WP E + L+ S+ Sbjct: 1002 LFGEKEHSDRSLEKGRLIHRMLQALPEIPLAERPDAASRYAERAARFWPEVERRKLVDSV 1061 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +LL+ + + + EVS+ G + + +SGRID++++ + I +YKT+ Sbjct: 1062 LKLLDEEGLQAVLGAQAQPEVSIMGTLTLEDRRYAVSGRIDRLAVLADRVVILDYKTNRV 1121 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P E IP+ H AQL+IY +IL YP+K + C+L+Y ++ + + L A A + Sbjct: 1122 PPATEEAIPFAHRAQLAIYREILTPLYPDKLIDCMLVYTENASLYTLSEKALGLALAAVK 1181 Query: 949 TK 950 TK Sbjct: 1182 TK 1183 >gi|190889666|ref|YP_001976208.1| probable ATP-dependent exonuclease V protein, nuclease and helicase domains [Rhizobium etli CIAT 652] gi|190694945|gb|ACE89030.1| probable ATP-dependent exonuclease V protein, nuclease and helicase domains [Rhizobium etli CIAT 652] Length = 1183 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 361/962 (37%), Positives = 544/962 (56%), Gaps = 25/962 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ R GL+ +++ I + WPLP + Y+S++ + G + A L+ A + + Sbjct: 235 LRKRLGLATDDTERGIAGEYWPLPELSGGTLELYLSMADQKGGAKAQEVAYGLRLAGRER 294 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R ++L FLT K P+ + + + + ++P L E + ++ RDR + Sbjct: 295 DGARRAAMLEKIFLTAKGEPKTDSQFLVKAMLAEAPQLTEAIAAARAHVAASRDRLKLMR 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M +T A+L LA LN YEE KK+ LDFEDLI T DLL K V WI YK+D+ I+ Sbjct: 355 MHGATQAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS IQW VI+SL EDFF G++ RTLFAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 E ++R +++GQ FS + LPLSFRSTAD+L VD++F +NA+GLS + HR Sbjct: 475 EESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDEIFRTADNARGLSAVGE-PVVHR 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 SSRIG G V LW+ V + ++E WT+ FD+ P+ + A+ILARRIA++I ++G Sbjct: 534 SSRIGHPGAVDLWDMVAP----EAAVKEEDWTAPFDATPESAPAAILARRIAHSIGALVG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +TI GK+R+I+A DILVLVRKR + LTR LK I V G DR +LT H+A+ Sbjct: 590 RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPLF+ SE+DIF I R + E+ + +++KFA G Sbjct: 648 QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEEDIFAIAALRGDNESAWSHLRKFAADGN 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +F+ ++ + + ++ S HDF+ +LG+ GR+QF++R G EV D+LDEFL FTL Sbjct: 708 ERFRAAVEKLELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E + LQ IS LE P +KR NEVRIMTVH +KGLE+P+VFLVD GS+ F Sbjct: 768 HESSGLPGLQSFISTLELEAPEVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K+ ++ + D+P +P W+P + N++ + ++ +EEY RLLYV MTRA Sbjct: 828 THTHLPKLRLIETEPDEPPMPAWVPVADLANSLTQNDAARIQILAEEEYRRLLYVAMTRA 887 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D+L++C + + + + + E EW +W Sbjct: 888 ADRLVVCGYRGVRVNNDTWHMMISTALSEGHPHVEAASFSD-----PDGEWPGIKWRVPR 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769 E + ER + +E +P+ L P+ P L+PS T + Sbjct: 943 VERS-FERINRSEARDNEISLPEGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLVVVSP 1001 Query: 770 -LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 +++ +G ++H++LQ + +P +R Y + A+ W E + L+ S+ Sbjct: 1002 LFSEKQGSDRSLEKGRLLHRMLQALPDIPPEERPGAAQRYAERAARFWSEAERRKLVDSV 1061 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +LL+ + + + EVS+ G + + +SGRID++++ + I +YKT+ Sbjct: 1062 LKLLDEKDLQPVLGEQARPEVSIMGTLTLDGRRYAVSGRIDRLAVLADRVVILDYKTNRV 1121 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P E IP+ H AQL+IY +IL YP K + C+L+Y ++ + + L A A + Sbjct: 1122 PPATEEAIPFAHRAQLAIYREILAPLYPGKRIDCMLVYTENASLYTLSEKALGLALAGLK 1181 Query: 949 TK 950 TK Sbjct: 1182 TK 1183 >gi|327192794|gb|EGE59722.1| putative ATP-dependent exonuclease V protein [Rhizobium etli CNPAF512] Length = 1183 Score = 640 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 364/962 (37%), Positives = 543/962 (56%), Gaps = 25/962 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ R GL+ +++ + I WPLP + Y+SL+ G + A L+ A + + Sbjct: 235 LRKRLGLAADDTEKGIAAQYWPLPELSGGTLELYLSLADHKGGAKAQEVAYGLRLAGRER 294 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +R ++L FLT K + + + + + ++P L E + ++ RDR + Sbjct: 295 DDAKRAAMLEKIFLTAKGEQKTDSQFLVKAMLAEAPQLTEAIAAARAHVAASRDRLKLMR 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M +TLA+L LA LN YEE KK+ LDFEDLI T DLL K V WI YK+D+ I+ Sbjct: 355 MHGATLAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS IQW VI+SL EDFF G++ RTLFAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 E ++R +++GQ FS + LPLSFRSTAD+L VD++F +NA+GLS + HR Sbjct: 475 EESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDEIFRTSDNARGLSAVGE-PVVHR 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 SSRIG G V LW+ V + ++E WT+ FD+ P+ + A+ILARRIA++I ++G Sbjct: 534 SSRIGHPGAVDLWDMVAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +TI GK+R+I+A DILVLVRKR + LTR LK I V G DR +LT H+A+ Sbjct: 590 RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPLF+ SE+DIF I R + E+V+ +++KFA G Sbjct: 648 QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEEDIFAIAALRGDNESVWSHLRKFAADGN 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +F+ ++ + + ++ S HDF+ +LG+ GR+QF++R G EV D+LDEFL FTL Sbjct: 708 ERFRAAVEKLELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E + LQ IS LE P +KR NEVRIMTVH +KGLE+P+VFLVD GS+ F Sbjct: 768 HESSGLPGLQFFISTLELEAPEVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K+ ++ + D+P +P W+P + N++ ++ +EEY RLLYV MTRA Sbjct: 828 THTHLPKLRLIETDPDEPPMPAWVPVADLGNSLTQKDAARIQILAEEEYRRLLYVAMTRA 887 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D+L++C + + + + + E EW W Sbjct: 888 ADRLVVCGYRGVRANNDTWHMMISTALSEGHPHVEAASFSD-----PDGEWPGIRWRVPR 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769 E + E + DE +P+ L P+ P L+PS T + Sbjct: 943 VERS-FEGINRSEARDDEISLPEGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLVVASP 1001 Query: 770 -LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 +++ +G ++H++LQ + +P +R Y + A+ WP E + L+ S+ Sbjct: 1002 LFSEKQRSDRSLEKGRLLHRMLQALPDIPPDERPGAAQRYGERAARFWPEAERRKLVDSV 1061 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +LL+ + + + EVS+ G + + +SGRID++++ + I +YKT+ Sbjct: 1062 LKLLDEKDLQPVLGEQARPEVSIMGTLMLDGRRYAVSGRIDRLAVLDDRVVILDYKTNRV 1121 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P E IP+ H AQL+IY +IL YP K + C+L+Y ++ + + L A A + Sbjct: 1122 PPATEEAIPFAHRAQLAIYREILAPLYPGKRIDCMLVYTENATLYTLSEKALGLALAGLK 1181 Query: 949 TK 950 TK Sbjct: 1182 TK 1183 >gi|209551530|ref|YP_002283447.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537286|gb|ACI57221.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1183 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 372/962 (38%), Positives = 556/962 (57%), Gaps = 25/962 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ R GL+ +++ I WPLP + Y+SL+ + G + A L+ A + + Sbjct: 235 LRERLGLAPDDTESRIAAQYWPLPELSGGMLELYLSLADQKGGAKAQEVAYGLRLAGRER 294 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +R L FLT K P+ + + + +P L + ++ RDR + Sbjct: 295 DDAKRAEFLEKIFLTVKGEPKADSQFTVKAMLADAPQLAGAIAAARAHVAASRDRLKLMR 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M+ +T A+L LA+ LN YEE KK+ LDFEDLI T DLL K V WI YK+D+ I+ Sbjct: 355 MYGATYAALVLAERLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS IQW VI+SL EDFF G++ RTLFAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPVVRTLFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 E ++R +++GQ FS + LPLSFRSTAD+L VD +F P+N++GLS + HR Sbjct: 475 EESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFREPDNSRGLSALGE-PVVHR 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 SSRIG G V LWE V + ++E WT+ FD+ P+ + A+ILARRIA++I ++G Sbjct: 534 SSRIGHPGAVDLWEMVAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +TI GK+R+I+A DILVLVRKR + LTR LK I V G DR +LT H+A+ Sbjct: 590 RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPLF+ SEDDIF I R + E+V+ ++++FA G Sbjct: 648 QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESVWNHLRRFAADGT 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +F+ ++ + + ++ S HDF+ +LG+ GR+QF++R G EV D+LDEFL FTL Sbjct: 708 ERFRAAVERLELFLRQSRSLSVHDFYARVLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E + LQ IS LE P +KR NEVRIMTVH +KGLE+P+VFLVD GS+ F Sbjct: 768 HESSGLPGLQSFISTLELEAPVVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K+ ++ + D+P +P+W+P S N++ + ++ +EEY RLLYV MTRA Sbjct: 828 THTHLPKLRLIETDADEPPMPVWVPVSDLANSLTQNDAVRIQMLAEEEYRRLLYVAMTRA 887 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D+L++C + + N TW+ M+ + D+ T S EW +W Sbjct: 888 ADRLVVCGYRGV----RLNNDTWHMMISTA-LRDDHPHVEATTFSSPDGEWPGIKWRVPR 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---------TN 769 E + ER + ++ +++P L P+ P L+PS T + Sbjct: 943 VERS-FERIDRSQERDSVERLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLLVVSP 1001 Query: 770 LESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 L + +++ +G +IH++LQ + +P +R + Y + A+ WP E + L+ S+ Sbjct: 1002 LFAEKERSDRSLEKGRLIHRMLQALPEIPPAERADAAGRYAERAARFWPETERRKLVDSV 1061 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +LL+ + +S ++ EVS+ G + + +SGRID++++ + I +YKT+ Sbjct: 1062 LKLLDEEGLQAVLSNEAQPEVSIMGTLTLEDRCYAVSGRIDRLAVLADRVVILDYKTNRV 1121 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P IP+ H AQL+IY +IL YP K + C+L+Y ++ + + L A A + Sbjct: 1122 PPATEAAIPFAHRAQLAIYREILAPLYPGKPIECMLVYTENASLYTLSEKALGLALAAVK 1181 Query: 949 TK 950 TK Sbjct: 1182 TK 1183 >gi|307322014|ref|ZP_07601393.1| double-strand break repair helicase AddA [Sinorhizobium meliloti AK83] gi|306892352|gb|EFN23159.1| double-strand break repair helicase AddA [Sinorhizobium meliloti AK83] Length = 1189 Score = 632 bits (1629), Expect = e-178, Method: Composition-based stats. Identities = 340/966 (35%), Positives = 524/966 (54%), Gaps = 27/966 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ GL E+ + +WPL ++ Y+ L + G A L+ Sbjct: 235 LRAALGLEPGETAGTVMAAVWPLAGLNGPALDDYIDLGLRLGGAKPSAIADGLRAVRAID 294 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R+S L F P+ + + + +P L+ ++++++ + DR + + Sbjct: 295 DAATRYSKLVELFFNGGGKPKAESAFLNAAMRRAAPQLELRVEEARSHMLACVDRLSIVQ 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M+ +T A+L LA+ LN YE KK LDFEDLI T LL + DV AW+ YK+DQ I+ Sbjct: 355 MYGATRAALVLAERLNRDYEALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW +I+SL DFF G+ + RT+FAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPAQWTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 RE + ++R + FS I L LSFRST D+L+ VD VF+ P NA+GLS S + H Sbjct: 475 RESTLTERRVRAGNKHFSPIRLQLSFRSTVDVLSAVDTVFANPGNARGLSARSEAIV-HA 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 S+RIGQ G V LW+ + + +E WT+ FD+ P+ + +ILARRIA + + IG Sbjct: 534 SNRIGQPGAVDLWDVIAP----EPAASEEDWTAPFDATPERAPVNILARRIAAVLEDWIG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +T+ G +R ++ D++VLVRKR + LTR LK I V G DR +LT H+A+ Sbjct: 590 RETVIEKGVRRAMRPGDVIVLVRKRD--AFVNALTRALKRRGNIPVAGADRLVLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPL + E+D+F++ +R E E+++ +++ Sbjct: 648 QDLIALGRFVLLPEDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQAGAEET 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 S++ ++ + +A+ PHDF+ +LGA GR+ F++R G+EV D+LDEFL F L Sbjct: 708 SRYHEAVRTLSRYSGLARELLPHDFYARVLGADGGRRAFLARLGSEVSDILDEFLTFALD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E+N LQ IS LE PT+KR +EVR+MTVH AKGLE+PVVFLVD G + F Sbjct: 768 HERNGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAF 827 Query: 599 SHKHIKKMHIMPSLNDDPG---IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + + D +P+W + N++++ + LKK +EEY RLLYVGM Sbjct: 828 VRQQVSDLRFLEKAQVDHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYRRLLYVGM 887 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA+D+LI+C + + N TW+ MV + D + + +EW W Sbjct: 888 TRAADRLIVCGYRGQ----RQNTDTWHSMVQGTLAQDLKGRGTPRLFRAGSEEWQGIAWR 943 Query: 716 THH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----- 769 H P + P + + +P LF+P P L PS Sbjct: 944 EAHVPRDLPTSEGRSEESQRPTAGLPTALFTPPAAPRRLPRPLAPSGTTIAIDDPDAEVI 1003 Query: 770 -----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + + RG I+H+LLQV+ ++ +R Y ++ WP E + L Sbjct: 1004 VGSALFAGKSAPKFSMLRGAILHRLLQVLPSVDGPERLAAAERYLARSVPRWPEAERRAL 1063 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 ++ +L++ + S +EVSV G + ++ +SGRID+++++ + I +YK Sbjct: 1064 AGTVMDVLDHADLQPLFGEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGDMVTIADYK 1123 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ +P+ E I + QL+IY ++LK YP K C+LI+ P + ++P+ L+++ Sbjct: 1124 TNREIPETPEEIAPVYRNQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLPEPMLDRSL 1183 Query: 945 AEISTK 950 E++TK Sbjct: 1184 EELATK 1189 >gi|15963787|ref|NP_384140.1| putative ATP-dependent nuclease/helicase protein [Sinorhizobium meliloti 1021] gi|307310975|ref|ZP_07590620.1| double-strand break repair helicase AddA [Sinorhizobium meliloti BL225C] gi|15072962|emb|CAC41421.1| ATP-dependent nuclease / helicase [Sinorhizobium meliloti 1021] gi|306899655|gb|EFN30282.1| double-strand break repair helicase AddA [Sinorhizobium meliloti BL225C] Length = 1189 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 340/966 (35%), Positives = 524/966 (54%), Gaps = 27/966 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ GL E+ + +WPL ++ Y+ L + G A L+ Sbjct: 235 LRAALGLEPGETAGTVMAAVWPLAGLNGPALDDYIDLGLRLGGAKPSAIADGLRAVRAID 294 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R+S L F P+ + + + +P L+ ++++++ + DR + + Sbjct: 295 DAATRYSKLVELFFNGGGKPKAESAFLNAAMRRAAPQLELRVEEARSHMLACVDRLSIVQ 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M+ +T A+L LA+ LN YE KK LDFEDLI T LL + DV AW+ YK+DQ I+ Sbjct: 355 MYGATRAALVLAERLNRDYEALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW +I+SL DFF G+ + RT+FAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPAQWTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 RE + ++R + FS I L LSFRST D+L+ VD VF+ P NA+GLS S + H Sbjct: 475 RESTLTERRVRAGNKHFSPIRLQLSFRSTVDVLSAVDTVFANPGNARGLSARSEAIV-HA 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 S+RIGQ G V LW+ + + +E WT+ FD+ P+ + +ILARRIA + + IG Sbjct: 534 SNRIGQPGAVDLWDVIAP----EPAASEEDWTAPFDATPERAPVNILARRIAAVLEDWIG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +T+ G +R ++ D++VLVRKR + LTR LK I V G DR +LT H+A+ Sbjct: 590 RETVIEKGVRRAMRPGDVIVLVRKRD--AFVNALTRALKRRGNIPVAGADRLVLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPL + E+D+F++ +R E E+++ +++ Sbjct: 648 QDLIALGRFVLLPEDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQAGAEET 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 S++ ++ + +A+ PHDF+ +LGA GR+ F++R G+EV D+LDEFL F L Sbjct: 708 SRYHEAVRTLSRYSGLARELLPHDFYARVLGADGGRRAFLARLGSEVSDILDEFLTFALD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E+N LQ IS LE PT+KR +EVR+MTVH AKGLE+PVVFLVD G + F Sbjct: 768 HERNGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAF 827 Query: 599 SHKHIKKMHIMPSLNDDPG---IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + + D +P+W + N++++ + LKK +EEY RLLYVGM Sbjct: 828 VRQQVSDLRFLEKAQVDHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYRRLLYVGM 887 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA+D+LI+C + + N TW+ MV + D + + +EW W Sbjct: 888 TRAADRLIVCGYRGQ----RQNTDTWHSMVQGTLAQDLKGRGTPRLFRAGSEEWQGIAWR 943 Query: 716 THH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL- 773 H P + P + + +P LF+P P L PS Sbjct: 944 EAHVPRDLPTSEGRSEESQRPTAGLPTALFTPPAAPRRLPRPLAPSGTTIAIDDPDAEAI 1003 Query: 774 ---------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + + RG I+H+LLQV+ ++ +R Y ++ WP E + L Sbjct: 1004 VGSALFAGKSAPKFSMLRGAILHRLLQVLPSVDGPERLAAAERYLARSVPRWPEAERRAL 1063 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 ++ +L++ + S +EVSV G + ++ +SGRID+++++ + I +YK Sbjct: 1064 AGTVMDVLDHADLQPLFGEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGDMVTIADYK 1123 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ +P+ E I + QL+IY ++LK YP K C+LI+ P + ++P+ L+++ Sbjct: 1124 TNREIPETPEEIAPVYRNQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLPEPMLDRSL 1183 Query: 945 AEISTK 950 E++TK Sbjct: 1184 EELATK 1189 >gi|17988306|ref|NP_540940.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 1 str. 16M] gi|17984079|gb|AAL53204.1| ATP-dependent nuclease subunit a [Brucella melitensis bv. 1 str. 16M] Length = 1180 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|294851330|ref|ZP_06792003.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026] gi|294819919|gb|EFG36918.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026] Length = 1180 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 469/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFFWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRREVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|306842786|ref|ZP_07475427.1| double-strand break repair helicase AddA [Brucella sp. BO2] gi|306287059|gb|EFM58567.1| double-strand break repair helicase AddA [Brucella sp. BO2] Length = 1180 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 308/966 (31%), Positives = 468/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKVS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + +R ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDRIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TQSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDV 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLRA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L YP + + L++ P + +P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLTPLYPGRVVEAALLFTEGPFLLPVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|254707379|ref|ZP_05169207.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] gi|261314862|ref|ZP_05954059.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] gi|261303888|gb|EEY07385.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] Length = 1180 Score = 630 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|306843520|ref|ZP_07476121.1| double-strand break repair helicase AddA [Brucella sp. BO1] gi|306276211|gb|EFM57911.1| double-strand break repair helicase AddA [Brucella sp. BO1] Length = 1180 Score = 630 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 468/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDACEDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AECAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGHDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P+ + AQL++Y ++L+ YP + + L++ P + +P L+ A Sbjct: 1098 TNRPPPKTLEAVPFAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLPVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|62290945|ref|YP_222738.1| UvrD/Rep family helicase [Brucella abortus bv. 1 str. 9-941] gi|82700856|ref|YP_415430.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308] gi|189025157|ref|YP_001935925.1| UvrD/REP helicase [Brucella abortus S19] gi|237816450|ref|ZP_04595443.1| double-strand break repair helicase AddA [Brucella abortus str. 2308 A] gi|254690236|ref|ZP_05153490.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|254731267|ref|ZP_05189845.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|256258489|ref|ZP_05464025.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|260546208|ref|ZP_05821948.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260755777|ref|ZP_05868125.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str. 870] gi|260759000|ref|ZP_05871348.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str. 292] gi|260884801|ref|ZP_05896415.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str. C68] gi|297247330|ref|ZP_06931048.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str. B3196] gi|62197077|gb|AAX75377.1| helicase, UvrD/Rep family [Brucella abortus bv. 1 str. 9-941] gi|82616957|emb|CAJ12061.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189020729|gb|ACD73451.1| UvrD/REP helicase [Brucella abortus S19] gi|237788517|gb|EEP62732.1| double-strand break repair helicase AddA [Brucella abortus str. 2308 A] gi|260096315|gb|EEW80191.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260669318|gb|EEX56258.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str. 292] gi|260675885|gb|EEX62706.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str. 870] gi|260874329|gb|EEX81398.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str. C68] gi|297174499|gb|EFH33846.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str. B3196] Length = 1180 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 306/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLA--VPAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMT+H AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|315122046|ref|YP_004062535.1| double-strand break repair helicase AddA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495448|gb|ADR52047.1| double-strand break repair helicase AddA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1179 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 635/953 (66%), Positives = 763/953 (80%), Gaps = 11/953 (1%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 LK+RF L NESYE IY+D+WPLP+ + SDI +Y+ L+ +LKKA L++ SQ Sbjct: 235 LKDRFDLPPNESYEKIYQDMWPLPHLRESDIKQYIFLAT---TKKMLKKANILKKLSQDH 291 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 IEER +LL SFFLT++F P ++T KK PDLKEK+ KSQ EFI I +R TYK Sbjct: 292 SIEERLNLLLSFFLTEEFKPYTHTTMMTASAAKKLPDLKEKIIKSQQEFILIWERLKTYK 351 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 +F +TLASLTLAK+LN HY++ KKKN LDFEDLI+ T DLLKKRD+SAWIRYKIDQEIN Sbjct: 352 IFSTTLASLTLAKHLNFHYDKLKKKNFFLDFEDLIVYTVDLLKKRDISAWIRYKIDQEIN 411 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HILIDEVQDTSL QWE+IRSLTEDFF+G N +S+PRTLFAVGDEKQSI+SFHGAEPKR Sbjct: 412 HILIDEVQDTSLSQWEIIRSLTEDFFIGGNVYSNPRTLFAVGDEKQSIFSFHGAEPKRFF 471 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 EK IN++R +AGQKFS I+LPLSFRST +IL VDKVFS ENAQGL+ED + HR Sbjct: 472 HEKTINKERIISAGQKFSTIQLPLSFRSTPEILAAVDKVFSTSENAQGLTEDKQQIL-HR 530 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 S+RIG G VQLWE+V+S+ NP+QE W S FDS+P+E+SASILARRIAYTIS MI Sbjct: 531 SNRIGHAGNVQLWEKVISK----PNPKQEDWISCFDSVPEETSASILARRIAYTISKMIR 586 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +DTI +NGKKR + AKDIL+LVRKRK+ P I FLTRFL ND+KISV NDRF+LTDHLAI Sbjct: 587 SDTIINNGKKRPVHAKDILILVRKRKNNPFIAFLTRFLINDHKISVASNDRFVLTDHLAI 646 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 KDLMALG FI+SQEDDLS V +LKSP+FN SE+DIF+ICT+RHETET+Y YIQK AN GI Sbjct: 647 KDLMALGNFIISQEDDLSLVSLLKSPIFNLSENDIFEICTKRHETETIYAYIQKLANHGI 706 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 SK H+++Y+ ELI I Q CSP+DFFTLILGAK+GR+QFISRFG EV+DVL+EFLNFTLR Sbjct: 707 SKCCHIVQYMQELICIYQSCSPYDFFTLILGAKEGRKQFISRFGIEVVDVLNEFLNFTLR 766 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 NEQ + S+LQEL+S+LE YPPT+K+ S N NEVRIMTVH+AKGLESPVVFLVDTGS+VF Sbjct: 767 NEQKNCSTLQELMSDLEHYPPTLKKE-SVNRNEVRIMTVHSAKGLESPVVFLVDTGSEVF 825 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 S HIKK+HI PS +D PG PIWIPQ RN IVSDLI+ LKKS QEE NRLLYVGMTRA Sbjct: 826 SSNHIKKIHISPSSDDCPGTPIWIPQQFLRNKIVSDLIQDLKKSAQEENNRLLYVGMTRA 885 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 SD+LIIC HSN SNE KSNQRTWY+MVY+SF+ D +VK++KL N NKDEW+AYEW + Sbjct: 886 SDKLIICSHSNASNENKSNQRTWYNMVYESFYEDTQVKEVKLKNPTNKDEWLAYEWCLPN 945 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 EN +E E E+KIP+KLF+PIKN++ Y+LNPS ++ K K E LL DN Sbjct: 946 TENIQVEEEAITAPSNREEKIPEKLFAPIKNEMETSYVLNPSMLNLKDKAIPEKLLPDNT 1005 Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 RG IIH+LLQVIFTLPE KR +I SYC KNA +E NLL+SI LL++P+M+ Sbjct: 1006 CLKRGQIIHQLLQVIFTLPEEKRDPYILSYCKKNANFLSVEEDNNLLISIKALLKDPIMS 1065 Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 TAMS DSY+EVSVSGKI+ KKD++ISGRIDQI+ISQ+N+FIFEYKTH +P+ IE+IP Sbjct: 1066 TAMSSDSYAEVSVSGKIHLSKKDVLISGRIDQIAISQKNVFIFEYKTHPLLPKGIEYIPS 1125 Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951 +HI QL+IYEK+LK+ YP+KS++CLLIY+S PK+F+IPQ KL+++F EI KI Sbjct: 1126 SHITQLAIYEKVLKNLYPDKSIICLLIYISGPKIFMIPQEKLDQSFMEIEDKI 1178 >gi|225853531|ref|YP_002733764.1| double-strand break repair helicase AddA [Brucella melitensis ATCC 23457] gi|254700733|ref|ZP_05162561.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|254709079|ref|ZP_05170890.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|256030604|ref|ZP_05444218.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|256045706|ref|ZP_05448584.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|256262985|ref|ZP_05465517.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|260563008|ref|ZP_05833494.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|261316580|ref|ZP_05955777.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|261751245|ref|ZP_05994954.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|265987652|ref|ZP_06100209.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|265992127|ref|ZP_06104684.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|225641896|gb|ACO01810.1| double-strand break repair helicase AddA [Brucella melitensis ATCC 23457] gi|260153024|gb|EEW88116.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|261295803|gb|EEX99299.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|261740998|gb|EEY28924.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|263003193|gb|EEZ15486.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|263092858|gb|EEZ17033.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|264659849|gb|EEZ30110.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|326410100|gb|ADZ67165.1| double-strand break repair helicase AddA [Brucella melitensis M28] gi|326539817|gb|ADZ88032.1| double-strand break repair helicase AddA [Brucella melitensis M5-90] Length = 1180 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|91974684|ref|YP_567343.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91681140|gb|ABE37442.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisB5] Length = 1159 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 262/952 (27%), Positives = 447/952 (46%), Gaps = 24/952 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G++ + E + +D+ P + + ++ E+G+ +A+ L+ A Sbjct: 226 LSATLGVAPQDRCEDVERDILDGPNLPRAQWSTAAAMF-ESGSANDQAQAKRLRAALALS 284 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + + F T+ P+K++ T++I +P E LK+ + +R M Sbjct: 285 DVAQ-LDKYCEVFFTKDG-PRKSLATKKIADAAPGFVEDLKREGARLEDLLERRRALLMR 342 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A L +A + K++ +LD++DLI T +L S+W+ +K+D+ ++H+ Sbjct: 343 ERTRALLVIAADVAERIRREKQERGLLDYDDLIDKTLAML-DSGASSWVHFKLDRGVDHV 401 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 LIDE QDTS QW+++ L +F G+ RT+FAVGDEKQSI+SF GA PK Sbjct: 402 LIDEAQDTSPKQWDIVAHLIAEFTAGEGARDGVRRTVFAVGDEKQSIFSFQGAVPKEFAE 461 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + Q+R AG F + SFRS A IL VD VF P+ + + D+ + H+S Sbjct: 462 RRDLLQRRFHGAGLNFEKVSFNYSFRSGATILQSVDHVFRDPDIYRSIHADAAYPL-HQS 520 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + LW + E W + FD++ + S LA+++ I+++I Sbjct: 521 LADAGPSVIDLWPLELPDDKQN----IEGWRAPFDAVSETSPEVRLAQKVQAEIASLIAG 576 Query: 360 DTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T+ + G +R ++ D+LVLVR+R + + LK I V G DR LT+H+AI Sbjct: 577 GTMTGSLGDRRRLRFGDVLVLVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 633 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 DLM L +L +DDL+ LKSPLF +DD+F++ +R ++ +++ A G Sbjct: 634 IDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFRLAWRRK--GSLRHALREKA-AGD 690 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +K ++ + +Q +P F+ +LG GR + + R G E D LDEFL L Sbjct: 691 AKLATALQRLDACAERSQTDTPFGFYAWLLGGVGGRARILRRLGPEANDALDEFLELALS 750 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 EQ + SLQ ++ L IKR + +EVR+MTVH AKGLE+PVVFLVDT S Sbjct: 751 YEQKAAPSLQGFMAWLRAADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLVDTTSSPS 810 Query: 599 SHKHIKKMHIMPSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + + + + G +W + + +V + T++EY RLLYV MT Sbjct: 811 DTQRLNLIRLPGGNAQPGSVGAMVWAGRKSNDPRVVEQARAEMVSETEDEYRRLLYVAMT 870 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA+D+LI+ N + +WYD++ N + + Y Sbjct: 871 RAADRLIVGG-CMPGNRNEVRALSWYDLISKGLENSGLTMRTAPPDGA----VKRYCRPE 925 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776 + + K ++ N +P D + E+ Sbjct: 926 DEVTEIAPSEQAPAAPPLVMPDWLHKAAPALRRPDNLLRPSDPDDADHRRIRRGETEAQR 985 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 + RG ++H+LLQ + LP R N + +NA W +E L + ++ + Sbjct: 986 QRALQRGTLVHRLLQSLPDLPADIRANAADRFLLRNADDWSPQERDALAARVLEVISDDR 1045 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + S +EV + G++ + ++ISG+ID++ ++ + I +YKT+H P+ + Sbjct: 1046 FAAVFAPGSRAEVPIVGRLQRHGEPVLISGQIDRLVVTDAEVLIVDYKTNHAPPRSLAET 1105 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P ++ QL++Y +L YP + + L++ P++ I L+ A ++ Sbjct: 1106 PPAYVRQLALYRAVLSLLYPQRIVRAALLWTEAPEIMEISAPALDAEQAALT 1157 >gi|256370501|ref|YP_003108012.1| double-strand break repair helicase AddA [Brucella microti CCM 4915] gi|256000664|gb|ACU49063.1| double-strand break repair helicase AddA [Brucella microti CCM 4915] Length = 1180 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 307/962 (31%), Positives = 468/962 (48%), Gaps = 44/962 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + +P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLPVPDAVLDDAM 1157 Query: 945 AE 946 Sbjct: 1158 GA 1159 >gi|239833145|ref|ZP_04681474.1| double-strand break repair helicase AddA [Ochrobactrum intermedium LMG 3301] gi|239825412|gb|EEQ96980.1| double-strand break repair helicase AddA [Ochrobactrum intermedium LMG 3301] Length = 1195 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 304/961 (31%), Positives = 465/961 (48%), Gaps = 44/961 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG S + + DLWP+P F ++ +S+ + G A L++ + Sbjct: 239 LHRAFGFDPQTSEDDLLADLWPIPEFSDDALDLIMSI--QKGASRAQDFALQLRRFDKVT 296 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +R ++L + FL P+ + + + K PD +E + + DR + Sbjct: 297 GQRDREAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPDFEEDFDAAAARVEQGLDRLKELR 356 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K+K +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 357 LVRLNLAALTLVDNLLQRYHDLKRKRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 416 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P+ Sbjct: 417 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNISRTLFAVGDEKQSIYSFQGAVPEDFA 476 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R RA +A KF + L SFRS D+L VD+VF+ PE +GL+ H Sbjct: 477 AQGRSVSLRAEDAELKFERVSLNFSFRSAPDVLQAVDEVFARPEAHRGLAG----ATVHE 532 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R G V++W+ + + + + W D L A LA +IA TI + + Sbjct: 533 AIRADAPGEVEIWDMLTP----EEVEEPDDWREPVDHLAA--PAVRLADQIAATIRHWLD 586 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + I G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 587 SGEIIP-GQNRRIMPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLRLTSHIAI 642 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F++ R + T++E + + + G Sbjct: 643 QDLMALGRFVLQPSDDLSLASVLKSPLFGWDDDQLFELAHPRGSSLTLFERLYQVS-RGD 701 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 + V K + ++A +F+ IL A R++ ++R G E D++DEF N+ L Sbjct: 702 AALAEVHKTLSRWRNMADTMPVFEFYARILSADGARRKLLARLGPEAGDIIDEFQNYALS 761 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + L+ P IKR NEVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 762 AERAGLPGLQAFLETLDAASPEIKRELDQGRNEVRIMTVHAAKGLEGAVVFLVDPGSAVW 821 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ + +P + +W P + + + I LK +EEY RLLYVGMT Sbjct: 822 TGSRAPKLIPFDFSDGNPPVKGYLWQPNAGYQTGFTAAQIDKLKTRAEEEYRRLLYVGMT 881 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + E K ++ +A Sbjct: 882 RAEDRLIICGYRGARESG-----------ETWHRLAEDALAAKAETFVHPVLKLAARRYR 930 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 + P ++ + +P+ PIK + P L PS + + E L Sbjct: 931 NTPRGMVEIVDQDKTEDHALPSLPRDYLRPIKPETGLPRPLAPSGASALIEADEEPPLDT 990 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + +P+ R+ Y + A WP E + Sbjct: 991 FSPVLGPGNGSPAFALRRGTAIHMLLQYLPDVPQADRETLAHDYLDRIAADWPETERQMA 1050 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV++ G I +D +SG+ID+IS+ + + I +YK Sbjct: 1051 WQSVRTILDDPTYAPVFAQGSRGEVAIMGTIELGGRDHAVSGQIDRISVGENRVLIVDYK 1110 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ I+ +P+ + AQL++Y ++L YP + + L++ P + +P L++ Sbjct: 1111 TNRPPPKTIDAVPFAYRAQLALYRELLAPLYPGRIVETALLFTEGPFLMPLPDAILDEGV 1170 Query: 945 A 945 A Sbjct: 1171 A 1171 >gi|222084227|ref|YP_002542753.1| double-strand break repair helicase AddA [Agrobacterium radiobacter K84] gi|221721675|gb|ACM24831.1| double-strand break repair helicase AddA [Agrobacterium radiobacter K84] Length = 1188 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 386/962 (40%), Positives = 548/962 (56%), Gaps = 25/962 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L R GLS ++ I + WPLP + + Y++L+ + G + A L+ A + Sbjct: 240 LLARLGLSAGDTEAGIAEQYWPLPGLSGATLELYLTLADQKGGAKAQEVAYALRLAKRET 299 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R +L LT K P+ + + + +P L E + ++ + RDR + Sbjct: 300 HPVARAEILEKVMLTGKGEPKSDSQFFVKAMLADAPALAEAVAAARAHVVTCRDRLKLMR 359 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M+++T A+L LA LN YEE KK+ LDFEDLI T DLL K+DV WI YK+DQ I+ Sbjct: 360 MYRATRAALVLADRLNRDYEELKKRRSQLDFEDLITRTADLLTKKDVGPWIHYKLDQGID 419 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS IQW VI+SL EDFF G++ + RT+FAVGDEKQSIYSF GA P+R Sbjct: 420 HILVDEAQDTSPIQWSVIQSLAEDFFSGESARQTLRTIFAVGDEKQSIYSFQGARPERFS 479 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 E ++R +GQ+FS I LPLSFRSTAD+L VD VF+ PENA+GLS + HR Sbjct: 480 EESDRTRRRVATSGQQFSSIRLPLSFRSTADVLAAVDHVFTAPENARGLSAV-DEPVVHR 538 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 SSRIG G V LWE + + ++E WT+ FDS P+ + A+ILARR+A TI N+IG Sbjct: 539 SSRIGHPGAVDLWEMIAP----EPAAKEEDWTAPFDSTPESAPAAILARRMAQTIGNLIG 594 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +TI GK R I+A DILVLVRKR + LTR LK I V G DR +LT H+AI Sbjct: 595 RETIIEKGKARFIEAGDILVLVRKRD--SFVNALTRALKRRNNIPVAGADRLVLTSHIAI 652 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPLF+ EDD+F + R E+V+ ++QKFA+ G Sbjct: 653 QDLLALGRFLLLPEDDLSLSALLKSPLFDLGEDDVFAVAALRGSDESVWNHLQKFADDGN 712 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +F+H + + + +++ S HDF+ +LG+ GR+QF++R G EV D+LDEFL FTL Sbjct: 713 ERFRHAVDRLKTFLALSKSLSVHDFYARVLGSFGGRRQFLARLGTEVSDILDEFLTFTLD 772 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E + LQ +S LE PT+KR NEVRIMTVH +KGLE+P+VFLVD G + F Sbjct: 773 HETSGLPGLQSFVSTLELEAPTVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGGKAF 832 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ KM ++ + D +P+W+P S N++ L+ T+EEY RLLYVGMTRA Sbjct: 833 THTHLPKMRLIETGKQDIPLPVWVPVSALANSLTQADTARLQSLTEEEYRRLLYVGMTRA 892 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D+LIIC + + N TW+ M+ + D + ++ S EW W Sbjct: 893 ADRLIICGYRGI----RENADTWHAMISAALRQDGE-RCTPVSFSGPDGEWQGLSWRVSQ 947 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE------- 771 E + ER E + +D +P L P+ N P L+PS T + Sbjct: 948 VERS-FERMEQAETTVDRGALPAGLSRPLPPQRNLPRPLSPSGAGTVIDDEADNLLVTSP 1006 Query: 772 ---SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 +++ +G IH++LQ + + R Y + A+ WP E L+ S+ Sbjct: 1007 LFTEKAKSDRSLEKGRFIHRMLQTLPEIASADRAEAARRYAERAARFWPQAERDALIGSV 1066 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 LL +P + S + +EVS+ G + + +SGRID++++ + I +YKT+ Sbjct: 1067 MALLSHPELQGVFSAHAQAEVSIMGTLTLDDQAYAVSGRIDRLTVLDDRVVILDYKTNRV 1126 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P+ E IP+ H AQL+IY +IL YP K + C+L+Y + + L AE+ Sbjct: 1127 PPRSAEQIPFAHRAQLAIYREILSPLYPGKRIDCVLVYTENASIHTLSGEALALTLAELK 1186 Query: 949 TK 950 TK Sbjct: 1187 TK 1188 >gi|254713494|ref|ZP_05175305.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] gi|254716150|ref|ZP_05177961.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261217923|ref|ZP_05932204.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261321227|ref|ZP_05960424.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] gi|260923012|gb|EEX89580.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261293917|gb|EEX97413.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] Length = 1180 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|254694724|ref|ZP_05156552.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] gi|261215053|ref|ZP_05929334.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] gi|260916660|gb|EEX83521.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] Length = 1180 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 306/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMT+H AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|148560369|ref|YP_001259904.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840] gi|148371626|gb|ABQ61605.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840] Length = 1180 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 469/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGFLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|227823893|ref|YP_002827866.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium fredii NGR234] gi|227342895|gb|ACP27113.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium fredii NGR234] Length = 1189 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 348/966 (36%), Positives = 539/966 (55%), Gaps = 27/966 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ GL+ ES E + WPL + + +Y+ L++ G ++ A+ L+ A + + Sbjct: 235 LRAALGLAPTESAESVMAGAWPLAGLNGAALEQYIGLALSLGGAKPVEIAEGLKAACKVK 294 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 EERF+ L S F P+ + + ++P L + +++ + DR + + Sbjct: 295 DAEERFASLLSVFFNGGGKPKAESAFFNKAMLAQAPHLAPLIDEARQHIVSTADRLSIVR 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M+++T A+L LA+ LN YE+ KK+ LDFEDLI T LL + DV AW+ YK+DQ I+ Sbjct: 355 MYEATRAALILAERLNGDYEDLKKRRSQLDFEDLINRTAALLSRSDVGAWVHYKLDQGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW +I++L DFF G+ + RT+FAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPAQWTIIQALAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 RE + ++R + FS I L LSFRST D+L+ VD VF+ P NA+GLS + + H Sbjct: 475 RESVLTERRVRAGNKYFSPIRLQLSFRSTLDVLSAVDTVFANPGNAKGLSARNEAIV-HA 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 S+RIG G V +W+ + + ++ WT+ FD+ P+ + +ILARRIA + + IG Sbjct: 534 SNRIGHPGAVDIWDIIAP----EPTTSEDDWTAPFDATPERAPVNILARRIAAVLEDWIG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +T+ G +R ++ D++VLVRKR + LTR LK I V G DR +LT+H+AI Sbjct: 590 KETVIEKGVRRPMRPGDVIVLVRKRD--AFVNALTRALKRRGNIPVAGADRLVLTNHIAI 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS +LKSPL N EDD+F + +R E E++++ +Q+ Sbjct: 648 QDLLALGRFVLLPEDDLSLAALLKSPLVNLGEDDVFDLAARRAEGESLWQRLQQLGAEEK 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 S++ V++ + +A+ PHDF+ +LGA GR+ F++R G+EV D+LDEFL F L Sbjct: 708 SRYCRVVRILAGYGELARDLLPHDFYARVLGAHGGRRAFLARLGSEVSDILDEFLTFALD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E++ LQ IS LE PT+KR +EVR+MTVH AKGLE+PVVFLVD G + F Sbjct: 768 HERSGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAF 827 Query: 599 SHKHIKKMHIMPSLNDDPG---IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + ++ +P+W + N++++ + LK+ +EEY RLLYVGM Sbjct: 828 VRQQVSDLRLLEKPQAGGAPVIVPVWRAPGSASNSLIAADNERLKRLAEEEYRRLLYVGM 887 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA+D+LI+C + + N TW+ MV + +D + + + S +EW + W Sbjct: 888 TRAADRLIVCGYRGQ----RQNLDTWHAMVQGTLAHDPKGRAVPTDFSAGGEEWTGHAWR 943 Query: 716 THH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL- 773 P P + K +P LF+P+ P L PS Sbjct: 944 EAPVPVTIPESGDAKSKPDAAASILPPALFTPLPPPRRLPRPLAPSGTSVAIDDPDREAI 1003 Query: 774 ---------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + + RG I+H+LLQV+ T+ E KR+ Y + WP E + L Sbjct: 1004 VGSALFAEQATPKFSMLRGAILHRLLQVLPTIEEAKRREAAERYLGRAVPGWPETERRAL 1063 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 ++ +L++ + S +EVSV G + ++ ISGR+D+++I+ + I +YK Sbjct: 1064 TAAVMDVLDHTELQPLFGEQSRAEVSVMGTLKLGSQEFAISGRLDRLAIAGDTVTIADYK 1123 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ VP ++ +P + QL+IY +LK YP K +LI+ P V ++P L+++ Sbjct: 1124 TNRDVPASVDDVPSVYRRQLAIYRDLLKPLYPGKQFRSVLIFTEGPAVRVLPDTMLDRSL 1183 Query: 945 AEISTK 950 E++TK Sbjct: 1184 EELATK 1189 >gi|254705105|ref|ZP_05166933.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] gi|261755810|ref|ZP_05999519.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] gi|261745563|gb|EEY33489.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] Length = 1180 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K + +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +LGA R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLGADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P++ + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMEAEPGLPRPLTPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|163844120|ref|YP_001628524.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445] gi|163674843|gb|ABY38954.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445] Length = 1180 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 306/966 (31%), Positives = 469/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K + +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LL+ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLEYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|159184128|ref|NP_353063.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58] gi|159139465|gb|AAK85848.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58] Length = 1185 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 353/963 (36%), Positives = 542/963 (56%), Gaps = 27/963 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ ++ E+ E + WPLP ++ Y++L+ E G +++ A L++A + Sbjct: 237 LRQEMQIAAGETEETAAEAFWPLPGLSGLVLDTYLTLADEVGGSRVIEVAYALREAKRQP 296 Query: 61 CIEERFSLLSSFFLTQKFTPQKNII--TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R L+ + LT K + + + + K +PDL + L ++D + R+R+ + Sbjct: 297 DPVRRMELIEAALLTAKGEKKSDAYVINKGMQKSAPDLVDALTLARDHVVACRNRYRLVR 356 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M +T ++L LA+ L +E+ KK+ LDFEDLI +LL + AW+ YK+DQ I+ Sbjct: 357 MLVATKSALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGID 416 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS +QW +I+SL DFF G++ RTLFAVGDEKQSIYSF GA P+R Sbjct: 417 HILVDEAQDTSPVQWSIIQSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFS 476 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 +E+ ++R Q F I LPLSFRST D+L VD+VFS P+NA GLS D+ + HR Sbjct: 477 QERDETKRRVDQVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNE-PVEHR 535 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 S+R G GTV++W+ V + +E WT+ FD+L + + A+I+ARRIA I++MIG Sbjct: 536 SNRAGHPGTVEVWDMVAPETTED----EEDWTAPFDALRESAPATIVARRIAARIADMIG 591 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 TI G +R ++ DILVLVRKR + LTR LK I V G DR LTDH+A+ Sbjct: 592 NQTIIEKGVERAVEPGDILVLVRKR--AAFVNALTRELKRRKNIPVAGADRLRLTDHIAV 649 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF++ EDDLS +LKSPLFN +EDD+F+I R E E+V++ +Q + Sbjct: 650 QDLLALGRFVVLPEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSGEET 709 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 S+ V + I +++ + HDFF +L GR++F+ R GNE DVLDEFL+F L Sbjct: 710 SRLSIVTDKLRHFISLSKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALD 769 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E+ LQ +S LE P +KR + EVRIMTVH +KGLE+PVVF+VD GS+ F Sbjct: 770 HERTGLPGLQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAF 829 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K+ + D P+W+P S N+++ + LK + ++EY RLLYV MTRA Sbjct: 830 NHSHVPKLRFV--EGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRA 887 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D L++C + K N W+ +V + ++ S + +EW W Sbjct: 888 ADHLVVCGYRGQ----KENPECWHAIVKAALAENQDH-CQPQAFSADGEEWQGLVWRKSE 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL---- 774 + Q ++ +P L +P+ + P L+PS T + L Sbjct: 943 ARPALAPHKPAEPQQEEDHTLPPGLLAPLPALPSLPRPLSPSGAGTIIDDGADDLAVRSP 1002 Query: 775 -------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 + + RG ++H++LQ + E +R+ Y + A+ WPA + + L+ + Sbjct: 1003 LFGEKTEASSLALQRGKLVHRMLQALPDFAESEREEAARRYAERAARFWPATDRERLIQA 1062 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 + R+L P + A S +S +EVS+ G + ++ +SGRID++++ + + + +YKT+ Sbjct: 1063 VLRVLSEPAVQPAFSANSRAEVSIMGTMTLGRQHYAVSGRIDRLAVERDRVILVDYKTNR 1122 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 P+E +P++H+AQL+IY +IL YP K VC LIY + + + +A A I Sbjct: 1123 VPPREARELPFSHVAQLAIYREILAPLYPGKEFVCALIYTESAAFVRVDDDAMAEALAAI 1182 Query: 948 STK 950 TK Sbjct: 1183 KTK 1185 >gi|23502951|ref|NP_699078.1| UvrD/Rep family helicase [Brucella suis 1330] gi|161620015|ref|YP_001593902.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365] gi|260567425|ref|ZP_05837895.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|23348986|gb|AAN30993.1| helicase, UvrD/Rep family [Brucella suis 1330] gi|161336826|gb|ABX63131.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365] gi|260156943|gb|EEW92023.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] Length = 1180 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K + +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +LGA R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLGADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P++ + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMEAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|256060066|ref|ZP_05450248.1| ATP-dependent nuclease subunit A [Brucella neotomae 5K33] gi|261324043|ref|ZP_05963240.1| double-strand break repair helicase AddA [Brucella neotomae 5K33] gi|261300023|gb|EEY03520.1| double-strand break repair helicase AddA [Brucella neotomae 5K33] Length = 1180 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 306/966 (31%), Positives = 469/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+ F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVLEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|225626478|ref|ZP_03784517.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo] gi|256158600|ref|ZP_05456490.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] gi|256254011|ref|ZP_05459547.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|260169510|ref|ZP_05756321.1| double-strand break repair helicase AddA [Brucella sp. F5/99] gi|261221152|ref|ZP_05935433.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|261759038|ref|ZP_06002747.1| UvrD/REP helicase [Brucella sp. F5/99] gi|265997112|ref|ZP_06109669.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] gi|225618135|gb|EEH15178.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo] gi|260919736|gb|EEX86389.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|261739022|gb|EEY27018.1| UvrD/REP helicase [Brucella sp. F5/99] gi|262551580|gb|EEZ07570.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] Length = 1180 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTERPFLLLVPDAVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|306837652|ref|ZP_07470521.1| double-strand break repair helicase AddA [Brucella sp. NF 2653] gi|306407210|gb|EFM63420.1| double-strand break repair helicase AddA [Brucella sp. NF 2653] Length = 1180 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 306/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVKMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+L L L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGELIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + K + ++A +F+ +L A R++ ++R G E D++DEF N+ L Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ D P + +W P S + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + + + TW+ +V D+ +T A Sbjct: 869 RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 P + EE +P P+K + P L PS + + E L Sbjct: 918 KTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + + KR++ Y + A WP E Sbjct: 978 SSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ +E +P+ + AQL++Y ++L+ YP + + L++ P + +P L+ A Sbjct: 1098 TNRPPPKTLEAVPFAYRAQLALYRELLRPLYPRRVVEAALLFTEGPFLLPVPDTVLDDAM 1157 Query: 945 AEISTK 950 + Sbjct: 1158 GALKDT 1163 >gi|153008153|ref|YP_001369368.1| double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC 49188] gi|151560041|gb|ABS13539.1| Double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC 49188] Length = 1180 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 308/966 (31%), Positives = 463/966 (47%), Gaps = 44/966 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L F S + + DLWP+P F + +S+ + G A L++ + Sbjct: 226 LHRAFRFDPQTSEDDLIADLWPIPEFSDDALELIMSI--QKGASRAQDFALQLRRFEKVT 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +R ++L + FL P+ + + + K PD +E + + DR + Sbjct: 284 SQRDREAVLRAAFLKTTGEPKSGSYVGSAAVKKLLPDFEEDFDAAAARVEQGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRQRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P+ Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGVGQRNISRTLFAVGDEKQSIYSFQGAVPEDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R RA +A KF + L SFRS D+L VD+VF+ PE +GL+ H Sbjct: 464 AQGRSVSLRAEDAELKFERVSLNFSFRSAPDVLQAVDEVFARPEANRGLAG----ATVHE 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R G V++W+ + + + + W D L A LA +IA TI + + Sbjct: 520 AIRSDAPGEVEIWDMLTP----EVVEEPDDWREPVDHLAA--PAVRLADQIAATIRHWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRRIMPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLRLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F++ R T++E + + + G Sbjct: 630 QDLMALGRFVLQPSDDLSLASVLKSPLFGWDDDRLFELAHPRGSGLTLFERLYQVS-RGD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 + V K + ++A +F+ IL A R++ ++R G E D++DEF N+ L Sbjct: 689 AALAEVHKTLSRWRNMADTMPVFEFYARILSADGARRKLLARLGPEAGDIIDEFQNYALS 748 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ LQ + LE P IKR NEVRIMTVH AKGLE VVFLVD GS V+ Sbjct: 749 AERAGLPGLQAYLETLEAASPEIKRELDQGRNEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808 Query: 599 SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + K+ ND P + +W P + + + I+ LK +EEY RLLYVGMT Sbjct: 809 TGSRAPKLIPFDFSNDSPSVKGYLWQPNAGYQTGFTTAQIEKLKTRAEEEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LIIC + T E K ++ +A Sbjct: 869 RAEDRLIICGYRGTRESG-----------ETWHRLVEDALATKAETFVHPVLKVAARRYR 917 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 + P E+ + P + PIK +I P L PS + + E L Sbjct: 918 NTPRGMVDIAEQDRTEDHALPSFPDEYREPIKPEIGLPRPLAPSGASALIEADEEPPLDS 977 Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG IH LLQ + +P+ R+ Y + A WP E + Sbjct: 978 FSPVLGPGNGTPAFALRRGTAIHMLLQYLPDVPQDGRETLARDYLGRIAADWPETERQIA 1037 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 S+ +L++P + S EV++ G I +D +SG+ID+IS+ + + I +YK Sbjct: 1038 WQSVRTILDDPTYAPVFAEGSRGEVAIMGTIELGGRDHAVSGQIDRISVGEDRVLIIDYK 1097 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ P+ IE +P+ + AQL++Y ++L YP + + L++ P + +P L++A Sbjct: 1098 TNRPPPKTIEAVPFAYRAQLALYRELLAPLYPGRIVETALLFTEGPFLMPLPDVVLDEAL 1157 Query: 945 AEISTK 950 + Sbjct: 1158 QSLKDS 1163 >gi|146337257|ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit [Bradyrhizobium sp. ORS278] gi|146190063|emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit [Bradyrhizobium sp. ORS278] Length = 1156 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 267/945 (28%), Positives = 451/945 (47%), Gaps = 28/945 (2%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 G+ E+ + I +D+ P ++ + + ++ G T K+A L+ A + Sbjct: 230 LGIGAGETLDAIERDILDGPNLPRANWTEIAA-RLDGGAKTDQKQADQLRAAL-AFSGSD 287 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 R FLT P+++++T++ + +P L + ++ + T Sbjct: 288 RVDEYLRVFLTDDKEPRRSVLTKKFAESNPGLAGLFDAEARRLDHLIEKRRAAVVRDRTE 347 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 A L +A A+Y K + +LD++DLI T +L + + W+ YK+D+ ++H+LIDE Sbjct: 348 ALLQIATAAAANYRREKDERGLLDYDDLIDKTLVMLNR-VSAGWVHYKLDRGVDHVLIDE 406 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 QDTS QW+++ + E+F G RT+FAVGDEKQSI+SF GA+P +R Sbjct: 407 AQDTSPRQWDIVAHIIEEFTSGAGARDGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQ 466 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 QKR T+AG F + SFRS +L VD VF E + H + Sbjct: 467 LQKRFTDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPIHNALTDA 526 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 V+LW + + E W + FD + S L+RRI I +I T+ Sbjct: 527 GPSLVELWSLC----ERDDRKEIEGWRAPFDGVSVTSPEVKLSRRIQAEIKRLIRVGTMT 582 Query: 364 -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 +G +R + D+L+LVR+R + + LK I V G DR LT+H+AI DLM Sbjct: 583 GHDGARRRLSYGDMLILVRRRGTA--FDAVIQALK-HAGIPVAGADRLKLTEHIAIIDLM 639 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L +L +DDL+ LKSPLF +DD+FK+ QR ++ E + A + Q Sbjct: 640 NLADALLLPQDDLALATALKSPLFGLDDDDLFKLAWQRR--GSLREALSAHA-ADDPRLQ 696 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 V++ + + A +P F+ +LG GR++ ++R G+E D LDEFL L E+ Sbjct: 697 AVVRRLQQCERRAAEDTPFAFYAWLLGGDGGRRRILARLGHEANDALDEFLELALSYERK 756 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 + +SLQ ++ L +KR + +EVR+MTVH AKGLE+ VVFLVDT S + Sbjct: 757 APASLQGFVAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLVDTTSSPADSQR 816 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + ++ + D I +W + V + K T++EY RLLYV MTRA+D+L Sbjct: 817 ---LRLIHVPHGDREIVVWAGRKADDPQAVVAARAAMLKETEDEYRRLLYVAMTRAADRL 873 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 +I N +WYD++ L + + E + + Sbjct: 874 VIGG-CMPGNMNNVRGGSWYDLMARGLDAAG------LQVEVIETEDGPVKRYARPEDIA 926 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--ESLLSDNQTF 780 ++E + ++P L + + +L PS + + ESL + + Sbjct: 927 ETAKDEARQMAESAVELPAWLRTAAVEAPGDVAVLRPSDPSSDERPVRTGESLAARSLAM 986 Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840 RG ++H+LLQ + +P +R++ Y +NA WP E L + ++ +P Sbjct: 987 QRGTLVHRLLQSLPDVPPERRRDAALRYLLRNAPDWPEDERDKLTARVLTVIADPRFAAV 1046 Query: 841 MSCDSYSEVSVSGKINCPKKDI-IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899 + S +EVS+ G++ P + ++SG+ID++ +++ + I ++KT+ P E+ +P Sbjct: 1047 FAPGSRAEVSIVGRLAHPGQPRTLVSGQIDRLVVTEAEVLIVDFKTNQQPPSELADVPEA 1106 Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 ++ QL++Y +L YP +++ L++ P +P + L+ Sbjct: 1107 YLRQLALYRAVLGQLYPGRAVRAALLWTEVPDFMELPPSALDAVL 1151 >gi|148251712|ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp. BTAi1] gi|146403885|gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp. BTAi1] Length = 1156 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 267/945 (28%), Positives = 458/945 (48%), Gaps = 28/945 (2%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 G++ +E+ I +D+ P +D + + ++ G T K+A L+ A ++ Sbjct: 230 LGIAPDETLGAIEQDILDGPNLPRADWTEIAA-RLDGGAKTDQKQADQLRAALAFSGSDQ 288 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 FLT+ P+K+++T++ +P L + ++ ++ + T Sbjct: 289 V-DEYLRVFLTEDKEPRKSLLTKKFADSNPGLAGLFESEARRLDRLIEKRRAAVVRDRTE 347 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 A L +A A+Y K++ +LD++DLI T +L + + W+ YK+D+ ++H+LIDE Sbjct: 348 ALLQIATAAAANYRREKEERGLLDYDDLIDKTLVMLNR-VSAGWVHYKLDRGVDHVLIDE 406 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 QDTS QW+++ + E+F G RT+FAVGDEKQSI+SF GA+P +R Sbjct: 407 AQDTSPRQWDIVAHIIEEFTAGAGAREGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQ 466 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 QKR T+AG F + SFRS +L VD VF E + H S Sbjct: 467 LQKRFTDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPVHNSLTDA 526 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 V+LW + + E W + FD + S LARRI I +I T+ Sbjct: 527 GPSLVELWSLC----ERDDRKEIEGWRAPFDGVSVTSPEVKLARRIQAEIKRLIRAGTMT 582 Query: 364 -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 +G +R + D+L+LVR+R + + LK I V G DR LT+H+AI DLM Sbjct: 583 GHDGARRRLSYGDMLILVRRRGTA--FDAVIQALK-HAGIPVAGADRLKLTEHIAIIDLM 639 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L +L +DDL+ LKSPLF +DD+FK+ QR ++ + + A + Q Sbjct: 640 NLADALLLPQDDLALAIALKSPLFGLDDDDLFKLAWQRR--GSLRDALTAQA-ADDPRLQ 696 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 V++ + + A +P F+ +LG GR++ ++R G+E D LDEFL L E+ Sbjct: 697 AVLRRLQQCERRAAEDTPFAFYAWLLGGDGGRRRILARLGHEANDALDEFLELALSYERK 756 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 + +SLQ ++ L +KR + +E+R+MTVH AKGLE+ VVFLVDT S + Sbjct: 757 APASLQGFVAWLRAADTEVKRDMEISRDEIRVMTVHGAKGLEASVVFLVDTTSSPADSQR 816 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + ++ + D I +W + V+ + K T++EY RLLYV MTRA+D+L Sbjct: 817 ---LRLIHVSHGDQEIVVWAGRKSDDPQPVATARAAMLKETEDEYRRLLYVAMTRAADRL 873 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 +I N +WYD++ L + + E + + Sbjct: 874 VIGG-CMPGNMTNIRGGSWYDLMARGLDAAG------LQVEVIETEDGPIKRYARAEDIA 926 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT--NLESLLSDNQTF 780 ++E + + ++P L + E +L PS + + ESL + + Sbjct: 927 ETAKDEARRMVEMPVELPAWLRTVAAETPGEVAVLRPSDPSADERPVRSGESLAARSLAM 986 Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840 RG ++H+LLQ + + +R++ Y +NA WP ++ L + ++++P Sbjct: 987 QRGTLVHRLLQSLPEVLPERRRDAALRYLLRNAADWPEEQRTGLAERVLAVIQDPRFAAV 1046 Query: 841 MSCDSYSEVSVSGKINCPKKDI-IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899 + S +EVS+ G++ P + ++SG+ID++ ++ + I ++KT+ P ++ +P Sbjct: 1047 FAPGSRAEVSIVGRLALPGQPRALVSGQIDRLVVTGSEVLIVDFKTNQQPPSDLAEVPPA 1106 Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 ++ QL++Y +L YP +++ L++ P+ IP + L+ Sbjct: 1107 YVRQLALYRAVLGQLYPQRAVRAALLWTEAPEFMEIPASALDAML 1151 >gi|83313261|ref|YP_423525.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum AMB-1] gi|82948102|dbj|BAE52966.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum AMB-1] Length = 1154 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 270/951 (28%), Positives = 463/951 (48%), Gaps = 27/951 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-QT 59 L+ R GL ++ + + +FQ + + V+ ++ TG+ + K+ + + + Sbjct: 225 LRTRLGLEAGDTPDSLLAWATDEAHFQGEGLREAVA-ALLTGSDSDRKRGEAMARWLADP 283 Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 E F+ + FLT + +K + T+ + + P +++ L + ++ +R ++ Sbjct: 284 AGRENGFAGWCAQFLTAEGGIRKTLATKAVREGFPGVEDCLLAEAERLYRLTERLRAARI 343 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 ++T A LTL L A Y AK ++D++DLI+ DLL + V+ W+ YK+D I+H Sbjct: 344 AEATGALLTLGGALLASYRRAKTHRALMDYDDLILGARDLLARPGVAPWVLYKLDGGIDH 403 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+ QW V+ LTE+FF G+ + RT+FAVGD KQSIYSF A+P+ R Sbjct: 404 VLIDEAQDTNPDQWAVVEKLTEEFFAGRGARETLRTVFAVGDAKQSIYSFQRADPREFER 463 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + AG K+ +++L LSFRS +L V+ VF+ + I H Sbjct: 464 MREAFATHVPAAGGKWEVVDLNLSFRSAPAVLEAVNAVFAPGRPGRDGVAGDED-ITHLP 522 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 R GQ G V++W V + + + +W + + +S + LAR +A I MI Sbjct: 523 HRGGQAGRVEVWPVV----EPRPADELPAWKPPVERIRGDSPRTRLARLMAARIRAMIDG 578 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + + S G R ++A D+LVLVR+R + L R LK+ + V G DR +LT+ +A+ Sbjct: 579 EVLESKG--RPVRAGDVLVLVRRRGG--FVEDLVRELKSRK-VEVAGADRMVLTEQMAVM 633 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DLMALG F+L EDDL+ +LK PL ED +F + R + ++E +++ Sbjct: 634 DLMALGNFLLLPEDDLTLATVLKGPLVGLGEDQLFTLAHHRGKDVGLWEALRQGVADEGG 693 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 F+ + + EL+ A SPH + +LG GR++ ++R G E D +DEF++ TL Sbjct: 694 VFEAAFRRLSELLAQADRVSPHTLYARVLGPLGGRRRLLARLGLEAEDSIDEFMSLTLAF 753 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ SLQ + LE IKR + VRIMTVH +KGL++P+VFL DT Sbjct: 754 ERAHPPSLQGFLHWLEAGALEIKRDLEQAGRDAVRIMTVHGSKGLQAPIVFLPDTMQVP- 812 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++ + +P W P+++ +++ K+S + EY RLLYV MTRA Sbjct: 813 ----TRSPRLLWLGEGEGELPAWPPRAEDMDSVCRQGADARKQSREREYRRLLYVAMTRA 868 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 D+L++C K + + W+ +V + + + Sbjct: 869 EDRLVVCGWRGL---KAAPETCWHALVQCALAPTAAAFDDPFLAKAAETAEGPVLVLANA 925 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 P + + +P + + P L PS + + T L + Sbjct: 926 QTAPPEKEKGAGPGAGQSSPLPDWALLSAEPEPIPPRPLAPSRPEGEEPTVRSPLAEMDG 985 Query: 779 --TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 + RG +IH+LLQ + LP R + + + A E + ++ +L++P Sbjct: 986 KPRWQRGKLIHRLLQTVPDLPPPDRSRAMLRFLARPAWGLETPEQLAIANEVSDILDHPG 1045 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + + S +EV + G+I D ++SGR+D++++S + I +YKT+ P + + Sbjct: 1046 LAGLFAPGSRAEVPLVGRI----GDRVVSGRVDRLAVSDTEVVIADYKTNRRPPATPDEV 1101 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 P ++ Q++ Y L YP+ + C+L++ P + IP +L+ A A + Sbjct: 1102 PELYVRQMAAYRLALACIYPSHRVRCVLVWTDGPLLTEIPSARLDDALAGL 1152 >gi|150398434|ref|YP_001328901.1| double-strand break repair helicase AddA [Sinorhizobium medicae WSM419] gi|150029949|gb|ABR62066.1| Double-strand break repair helicase AddA [Sinorhizobium medicae WSM419] Length = 1189 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 337/966 (34%), Positives = 519/966 (53%), Gaps = 27/966 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ L+ ++ E I WPL + + Y+ L+ G A+ + Sbjct: 235 LRAALDLNPGDTPEAIMAAAWPLAGLNGAALVDYIGLASRLGGTKPTAIAEGFRTVRAIG 294 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R+ L FL P+ + + + +++P L+ +++++ + DR + + Sbjct: 295 DPAARYDRLLETFLNGGGKPKADSAFLNAAMRREAPHLESLIEEARSHLLACVDRLSIVR 354 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M+++T A+L LA+ LN YE KK LDFEDLI T LL + DV AW+ YK+DQ I+ Sbjct: 355 MYEATRAALVLAERLNRDYESLKKARSQLDFEDLINRTAALLARSDVGAWVHYKLDQGID 414 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW +I+SL DFF G + RT+FAVGDEKQSIYSF GA P+R Sbjct: 415 HILVDEAQDTSPAQWTIIQSLAADFFAGDTARADDRTIFAVGDEKQSIYSFQGARPERFS 474 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 RE+ + ++R ++FS I L LSFRST D+L+ VD VF+ NA+GLS + H Sbjct: 475 RERTLTERRVRAGNKRFSPIRLQLSFRSTVDVLSAVDTVFANIGNARGLSARDEAIV-HA 533 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 S+RIGQ G V LWE + + E WT+ FD+ P+ + +ILARRIA + + IG Sbjct: 534 SNRIGQPGAVDLWEVIAP----EPAASDEDWTAPFDATPERAPVNILARRIAAVLEDWIG 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +T+ G +R ++ D++VLVRKR + L R LK I V G DR +LT H+A+ Sbjct: 590 KETVIEKGVRRAMRPGDVIVLVRKRD--AFVNALMRALKRRGNIPVAGADRLVLTSHIAV 647 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L EDDLS + KSPL N EDD+F++ +R+E E+++ +Q+ Sbjct: 648 QDLIALGRFVLLPEDDLSLAALFKSPLVNLCEDDVFELAARRNEGESLWHRLQQAGVEET 707 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 S++ ++ + +++ SPHDF+ ILGA GR+ F++R G+EV D+LDEFL F L Sbjct: 708 SRYNATVRKLAAFSTLSRELSPHDFYARILGAHGGRRAFLARLGSEVSDILDEFLTFALD 767 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E++ LQ IS LE PT+KR +EVR+MTVH AKGLE+PVVFLVD G + F Sbjct: 768 HERSGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAF 827 Query: 599 SHKHIKKMHIMPSLNDDPGI---PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + + D + P+W + N++++D + LK +EEY RLLYVGM Sbjct: 828 VRQQVSDLRFLEKPQADQTLLTVPVWRAPGSAPNSLIADDNERLKMLAEEEYRRLLYVGM 887 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA+D+LI+C + + N TW+ MV + D + +EW W Sbjct: 888 TRAADRLIVCGYRGQ----RQNVDTWHSMVQGTLAQDLMGRATPRLFRAAGEEWQGLAWR 943 Query: 716 THH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----- 769 H P + P + + + +P+ LF+ P L PS Sbjct: 944 ETHVPRDLPAADGASGEPEQAKAGLPRALFTAPPPPRRLPRPLAPSGTAIAIDEPDGSSI 1003 Query: 770 -----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + + RG I+H+LLQV+ ++ +R Y ++ WP E L Sbjct: 1004 VGSALFTGKNAPKFSMLRGAILHRLLQVLPSIDAVERTAAAERYLARSVPRWPEAERLAL 1063 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 ++ +L + + S +EVSV G + ++ +SGRID++++S + I +YK Sbjct: 1064 AATVMDVLGHAELQPLFGEHSRAEVSVMGTLKLGPREFAVSGRIDRLAVSGDTVTIADYK 1123 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T+ +P E I + QL+IY ++LK YP K C+LI+ P + ++ + L+++ Sbjct: 1124 TNREIPASAEDIAPVYRNQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLSEAMLDRSL 1183 Query: 945 AEISTK 950 ++TK Sbjct: 1184 EALATK 1189 >gi|260463224|ref|ZP_05811426.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum WSM2075] gi|259031074|gb|EEW32348.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum WSM2075] Length = 1166 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 290/963 (30%), Positives = 462/963 (47%), Gaps = 34/963 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQT 59 L + F ++ E I WPLP F + + T ++L ++A Sbjct: 221 LFDEFHFRPGQTAEGIAASAWPLPGFLPDYFTGFAQAAESTDARSVLNNILPYARRAFAE 280 Query: 60 QCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 R L+ FL P + + + PDL ++ + I+ DR + Sbjct: 281 SDPVRRLQQLARAFLKTDGDPYDPAKAFKKALTDRLPDLADRYLSASSAIIETVDRLALF 340 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 +M + T A+LT+A +L A YE K+ LDF DLI T +LL + D W++YK+DQ I Sbjct: 341 RMLEGTAAALTIADWLIARYEVLKRGRGFLDFNDLITRTVNLLARPDAGPWVQYKLDQGI 400 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKR 236 +HIL+DE QDTS QWEV++ L E+FF G RT+FAVGDEKQSIYSF GA P Sbjct: 401 DHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQSIYSFQGAAPDS 460 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + + R +A F+ ++L SFRST D+L+ VD+VF+ P +G+S D + Sbjct: 461 FADSRLLFSSRVRDAEASFADLKLTWSFRSTDDVLSAVDRVFADPVVRRGISHDPD-PLS 519 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 H++ R G V++W + + + + WT D + A +A +A TI+ Sbjct: 520 HKAIRTDAPGYVEVWPSIG----ADIVDEPDDWTQAIDH--AHAPAVRVAENVATTIAGW 573 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 IG I G+ + ++ D+LVLVRKR I V G DR L H+ Sbjct: 574 IGNGEIIE-GRGKRLRPGDVLVLVRKRDS---FVHALTRALKRRDIPVAGADRLSLPGHI 629 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 A+KDL+ALGR ++ +DDLS +L+SP+F+ E+ +F + QR ++ +++ A Sbjct: 630 AVKDLIALGRLLIQPQDDLSLAAVLRSPIFDLPEETLFALAAQRAPGLSLATSLRQHAGE 689 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536 V+ + A F +F+ +L R++ I+R G E D+LDEFL+F Sbjct: 690 -SEALAIVVAQLDIWTDEAAFKPVFEFYAGLLARDGVRRKMIARLGPEAGDILDEFLSFC 748 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 L E+ L+ +S LE P IKR +EVR+MTVH AKGLE+PVVFLVD GS Sbjct: 749 LAEERTGLPGLEAFLSTLENAGPEIKREMDQTRDEVRVMTVHAAKGLEAPVVFLVDGGSA 808 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 FS +H+ ++ +W S N ++ +EY RLLYVGMT Sbjct: 809 PFSDQHLPRLMPFDGSGWVGKGYLWRSASDVANGFSKAAAARARELADDEYRRLLYVGMT 868 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LI+C + ++ N TW+ +V + ++ Y + Sbjct: 869 RAEDRLIVCGYH---GKRAPNTGTWHSIVSRALIGAPESEQRAHPAGGE----PVYRFHV 921 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK--------- 767 L E +Q +P LF P+ + P L+PS + Sbjct: 922 TELPPVALATAEQARQTDAFGPLPTNLFRPLPPFEDLPRPLSPSGASALIEEGKETVVDK 981 Query: 768 --TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 L++ RGL +HKLLQ++ + E +R+ Y + WP E + L Sbjct: 982 ASPVLDADAEPGFAVLRGLALHKLLQMLPGIAEDQREGAAARYLARTGAEWPPAEREKAL 1041 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 S+ +L +P + + S +EV++ G + K+ ISG+ID+++++ + I +YKT Sbjct: 1042 ASVIAILADPYLGQLFAPSSRAEVAIMGSLEVRGKNRSISGKIDRLAVTPDAVSIVDYKT 1101 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + P + +P ++ QL++Y +L+ YP + + L++ P++ +P ++ A A Sbjct: 1102 NRPAPAGLAEVPPAYLLQLALYRALLQPLYPGREVKAALLFTEAPRLIELPAGAMDDALA 1161 Query: 946 EIS 948 ++ Sbjct: 1162 RLT 1164 >gi|316931471|ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris DX-1] gi|315599185|gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris DX-1] Length = 1161 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 266/958 (27%), Positives = 447/958 (46%), Gaps = 32/958 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G++ ++S E +D+ P S+ V+ + E G+ +A+ L++A Sbjct: 224 LSATLGVAPDDSCEAADRDIVDGPNLPRSEW-AAVAATFEGGSANDQAQARRLREALALT 282 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + F T+ +K++IT+++ +P L E+L++ + +R + Sbjct: 283 DAAQ-IDAYLQVFFTKDSGLRKSLITKKLGDGAPGLAERLQREGARLGALLERRRALALR 341 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A L +A + + K++ +LD++DLI T +L + W+ +K+D+ ++H+ Sbjct: 342 ERTRALLVIAAQVAGNIAREKRERGLLDYDDLIDKTLAML-DSGAAGWVHFKLDRGVDHV 400 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 LIDE QDTS QW+++ L ++F G+ RT+FAVGDEKQSI+SF GA PK Sbjct: 401 LIDEAQDTSPKQWKIVARLIDEFTAGEGARDGIKRTIFAVGDEKQSIFSFQGAVPKEFAE 460 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + Q+R T AG F + SFRS A IL VD VF P + + D + H S Sbjct: 461 WRDLLQRRFTGAGLTFEKVSFNYSFRSGAAILQSVDHVFRDPAIYRSIHADIDYPV-HAS 519 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + LW V Q E W + FD++ + S LA ++ IS +IG Sbjct: 520 LADAGPSLIDLWPLEVPDDRQQ----IEGWQAPFDAVSETSPEVRLADKVRGEISELIGR 575 Query: 360 DTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T G++R + D+L+LVR+R + + LK I V G DR LT+H+AI Sbjct: 576 GTRTGPVGQRRPLSYGDVLILVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 632 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 DLM L +L +DDL+ LKSPLF +DD+FK+ QR Sbjct: 633 IDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQRKGPLRAALADHAAG---D 689 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNF 535 +F V + + AQ +P F+ +LG GR + + R G E D LDEFL Sbjct: 690 QRFAAVQRRLESYAARAQVETPFGFYAWLLGGDGADSGRARILRRLGPEANDALDEFLEL 749 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L EQ SLQ ++ L + IKR + +EVR+MTVH AKGLE+PVVFL+DT S Sbjct: 750 ALSFEQKRAPSLQGFMAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTS 809 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIP--IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + + + + +P +W + ++V + + T++EY RLLYV Sbjct: 810 SPADTQRLNLIRLPGGNAAPGSVPAMVWAGRKADDPSVVEQARSAMIEETEDEYRRLLYV 869 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 MTRA+D+LI+ N + +WYD++ + + + + K + Sbjct: 870 AMTRAADRLIVGG-CMPGNRNEVRPHSWYDLISKGLESSGLAMQSVPPDGVIKRYCRPED 928 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NL 770 P + +P L P + +L PS + + Sbjct: 929 VIEETGSAMPSQEATVTS-------LPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPG 981 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 ES S ++ RG ++H+LLQ + + R + +NA W +++ L + Sbjct: 982 ESDASRSRALQRGTLVHRLLQSLPDIAAGDRSAAAGRFLARNAPDWNSEDRDALAAQVLG 1041 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 L+ + S +EV + G++ +++SG+ID++ +++ + I +YKT+H P Sbjct: 1042 LIADARFAAVFGPGSRAEVPIVGRLQRRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAPP 1101 Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 + P ++ QL+ Y +L YP +++ L++ ++ I + L+ A+++ Sbjct: 1102 RVEAEAPRAYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMEISASALDAEQADLT 1159 >gi|154250594|ref|YP_001411418.1| double-strand break repair helicase AddA [Parvibaculum lavamentivorans DS-1] gi|154154544|gb|ABS61761.1| Double-strand break repair helicase AddA [Parvibaculum lavamentivorans DS-1] Length = 1156 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 266/953 (27%), Positives = 466/953 (48%), Gaps = 32/953 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT- 59 ++ + +E+ I ++ LP + + + + +G T +K A+ L+ Sbjct: 226 IRIALSVGADETTPGIRVEIAALPEAAMHN----AAEVLASGTKTDVKCAEALRAFLGAR 281 Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 E FLT++ P+ ++T + KK PD++++L Q+ I++ R + Sbjct: 282 ASRAENLDTYLGIFLTKEMKPRARLVTAALAKKHPDVEQELLAEQERIIRLHARLRAIGV 341 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 ++T A +TLA + +++AK +LD++DLI T DLL R ++ W+ YK+D I+H Sbjct: 342 AEATEAIVTLAVEILETFDKAKHARALLDYDDLISKTRDLLTMRAMAPWVLYKLDGGIDH 401 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 ILIDE QDTS QW++I L ++F G RT+FAVGDEKQSI+SF GA+P R Sbjct: 402 ILIDEAQDTSPEQWDIIARLADEFLSGSGARGVVRTIFAVGDEKQSIFSFQGADPARFDD 461 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 K ++R + Q++ + L SFRS ++L VDKVF + GL+ I H + Sbjct: 462 MKIYFERRVKASEQRWDYVPLTRSFRSVPEVLAAVDKVFESLKARSGLTASGNLDI-HIA 520 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 R G V++WE + +P W + D + + + + LA RIA TI N + + Sbjct: 521 HRELDAGLVEIWELEEPDEGQEASP----WDAPLDYMTEAAPMAKLAARIAATIRNWLDS 576 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + + R I+A DIL+LVR+R + + R LK + + V G DR +LT+ LA+ Sbjct: 577 KEVLISKG-RPIRAGDILILVRRRN--AFVGEMVRHLK-ELGVPVAGADRMVLTEQLAVM 632 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DL+AL RF+L EDDL+ +LKSP F+E+++F + R T+++ +++ A Sbjct: 633 DLLALARFVLLPEDDLTLATVLKSPFAGFTEEEVFDLAWNRK--GTLWQSLKEKATRN-P 689 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 ++ ++ L+ A + P++FF +LG + GR + ++R G E D +DEFL+ L Sbjct: 690 RYAEAAAFLLRLLERADYEPPYEFFAHVLGGEGGRTRLLARLGPEAADPIDEFLSLALEF 749 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E+ +L+ + LE+ IKR +EVR+MTVH AKGLE+ +VF+ DT + Sbjct: 750 ERKHPPALEAFVHWLERGSSEIKRDMDQGRDEVRVMTVHGAKGLEAEIVFMPDTCAAPGG 809 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + D P + +W + K + + + ++ EY RLLYV +TRA Sbjct: 810 SHDPALLSLPALEQDGPKLLLWPVRKKDEDEVSAGARALHREIQAAEYRRLLYVALTRAR 869 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 D+L I + N + + + ++ I ++ + Sbjct: 870 DRLYISGYRNATPPSSECWYEMVCETLKPAAREIVLPDGRMVWRIEGEQRRQVDSKAPSA 929 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSP---IKNDINEPYILNPSTIDTKGKTNLESLLSD 776 P E + + P + +P D+ EP +L+P D + Sbjct: 930 AEEPSAPPEWAHRDAPLEPTPSRPLAPSRLPPEDLEEPSVLSPLAGDNTNR--------- 980 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 F RG +IH+LL+ + + +R+ + + A + ++ R+L++ Sbjct: 981 ---FRRGSLIHRLLESLPDMEPAERRAAARRFLAQPAHGIDEAAQNEIEAAVFRVLDDAT 1037 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + S +EV V+G I + ++I+G+ID++ +++ ++ I +YKT+ PQ +E + Sbjct: 1038 IAHVFGKGSRAEVPVAGTIELGGRPLLIAGQIDRLCVTEDSVTIIDYKTNRPPPQTLEAV 1097 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 +I Q++ Y +L YP + + C+L++ P + +P L KA Sbjct: 1098 VPAYIGQMAAYRALLAAIYPERMIRCVLLWTDGPALMELPAEMLEKALRAAKP 1150 >gi|192288510|ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris TIE-1] gi|192282259|gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris TIE-1] Length = 1161 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 267/958 (27%), Positives = 449/958 (46%), Gaps = 32/958 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G++ +S E +D+ P S+ V+ E G+ +A+ L++A Sbjct: 224 LSATLGVAPGDSCEAADRDIVDGPNLPRSEW-AAVAAIFEGGSANDQAQARRLREALALT 282 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + F T+ +K++IT+++ +P L E+L++ + +R + Sbjct: 283 DAAQ-IDAYLQVFFTKDSGLRKSLITKKLGDSAPGLAERLQREGARLAGLLERRRALALR 341 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A L +A + + K++ +LD++DLI T +L + W+ +K+D+ ++H+ Sbjct: 342 ERTRALLVIAAQVAGNIAREKRERGLLDYDDLIDKTLAML-DSGAAGWVHFKLDRGVDHV 400 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 LIDE QDTS QW+++ L ++F G+ RT+FAVGDEKQSI+SF GA PK Sbjct: 401 LIDEAQDTSPKQWKIVARLIDEFTAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAE 460 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + Q+R T AG F + SFRS A IL VD VF P + + DST + H+S Sbjct: 461 WRDLLQRRFTGAGLTFEKVSFNYSFRSGAAILQSVDHVFRDPAIYRSIHADSTYPL-HQS 519 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 ++ LW V Q E W + FD++ + S LA ++ I +I Sbjct: 520 LADAGPSSIDLWPLEVPDDRQQ----IEGWQAPFDAVSETSPEVRLADKVRAEIGALIAR 575 Query: 360 DT-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T G++R + D+L+LVR+R + + LK I V G DR LT+H+AI Sbjct: 576 GTQTGPMGRRRPLSYGDVLILVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 632 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 DLM L +L +DDL+ LKSPLF +DD+FK+ QR + + Sbjct: 633 IDLMKLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQRKGSLSAALADHAAG---D 689 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNF 535 SKF V + + AQ +P F+ +LG GR + + R G E D LDEFL Sbjct: 690 SKFAAVQRRLESYAARAQAETPFGFYAWLLGGDGSDSGRARILRRLGPEANDALDEFLEL 749 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L EQ SLQ ++ L + IKR + +EVR+MTVH AKGLE+PVVFL+DT S Sbjct: 750 ALSFEQKRAPSLQGFVAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTS 809 Query: 596 QVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + + + + + +W + +IV + + T++EY RLLYV Sbjct: 810 SPADTQRLNLIRLPGGNAAPGSVAAMVWAGRKADDPHIVEQARSAMIEETEDEYRRLLYV 869 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 MTRA+D+LI+ N + +WYD++ + V + + K + Sbjct: 870 AMTRAADRLIVGG-CMPGNRNEVRPHSWYDLISKGLESSGLVMQPVPPEGVIKRYCRPED 928 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NL 770 + + +P L P + +L PS + + Sbjct: 929 VIEEIGTVSQGQELAVTH-------LPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPG 981 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 ES S ++ RG ++H+LLQ + + R + +NA W ++ L + Sbjct: 982 ESDASRSRALQRGTLVHRLLQSLPEIAVADRPAAAGRFLARNASDWSEEDRAALAAQVLG 1041 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 L+ + S +EV + G++ +++SG+ID++ +++ + I +YKT+H P Sbjct: 1042 LIADARFAAVFGSGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAPP 1101 Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 + P +++ QL+ Y +L YP +++ L++ ++ + + L+ A+++ Sbjct: 1102 RVEAEAPRSYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMELSASALDAEQADLT 1159 >gi|319780204|ref|YP_004139680.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166092|gb|ADV09630.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1172 Score = 610 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 298/965 (30%), Positives = 475/965 (49%), Gaps = 36/965 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQT 59 L + F ++ E I +WPLP F + + T ++L +QA Sbjct: 225 LFDEFHFHPGQTAEGIAASVWPLPGFLPDYFAGFAHAAEATDARSVLNNILPYARQAFAE 284 Query: 60 QCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 R LL+ FL + + + PDL E+ + + ++ DR + Sbjct: 285 GDPIRRLQLLARAFLKTDGDAYDPAKAFKRALVDRLPDLAERYLSAANAIVETTDRLALF 344 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 +M + T A+LT+A +L A YE K+ LDF DLI T +LL + D W++YK+DQ I Sbjct: 345 RMLEGTAAALTIADWLIARYEMLKRSRGFLDFNDLITRTVNLLARPDAGPWVQYKLDQGI 404 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKR 236 +HIL+DE QDTS QWEV++ L E+FF G RT+FAVGDEKQSIYSF GA P Sbjct: 405 DHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQSIYSFQGAAPDS 464 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + + R +A F+ ++L SFRST D+LT VD+VF+ P +G+S D +R Sbjct: 465 FADSRLLFAGRVRDAEASFADLKLTWSFRSTDDVLTAVDRVFADPAVRRGISHDPD-PLR 523 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 H++ R G V++W V + + + WT D + A +A +A TI+ Sbjct: 524 HQAIRTDAPGYVEVWPSVG----ADVVDEPDDWTQAIDH--AHAPAVRVAENVAVTIAGW 577 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 IG+ I G+ + ++ D+LVLVRKR + LTR LK I V G DR L H+ Sbjct: 578 IGSGEIIE-GRGKWLRPGDVLVLVRKRD--RFVHALTRALK-RRDIPVAGADRLSLPGHI 633 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 A+KDL+ALG ++ +DDLS +L+SP+F+ E+ +F + QR ++ +++ A Sbjct: 634 AVKDLIALGHLLIQPQDDLSLAAVLRSPIFDLPEEALFMLAAQRPAGLSLIASLRQHAGE 693 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536 + ++ + + A F +F+ +L R++ I+R G E D+LDEFL+F Sbjct: 694 -SERLAKIVAQVDIWTNEAAFKPVFEFYAALLARDGVRRKMIARLGPEAGDILDEFLSFC 752 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 L E+ L+ +S LE P IKR +EVR+MTVH AKGLE+PVVFLVD GS Sbjct: 753 LAEERTGLPGLEAFLSTLENAGPEIKREMDQTRDEVRVMTVHAAKGLEAPVVFLVDGGSA 812 Query: 597 VFSHKHIKKMHIMPSLND--DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 FS +H+ ++ S D +W S+ N ++ +EY RLLYVG Sbjct: 813 PFSDQHLPRLMPFDSSGANWDGKGYLWRSASEVANGFSKAAASRARELADDEYRRLLYVG 872 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA D+LI+C + ++ N TW+ +V + ++ + + Sbjct: 873 MTRAEDRLIVCGYH---GKRAPNAGTWHSIVSRALIGAPESEQRAHPAGGE----PVHRF 925 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------- 765 E ++Q +P LF P+ + P L+PS Sbjct: 926 HVTKLPPVAPSSAEQVRQADAFGPLPATLFRPLLPFEDLPRPLSPSGASALIDEGKQAVV 985 Query: 766 --GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 L++ RGL +HKLLQ++ + E +R Y + WP E + Sbjct: 986 DKASPVLDADAEPGFAVQRGLALHKLLQMLPGIAEPERAGAAERYLLRTGADWPPSEREK 1045 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 L S+T +L +P + S +EV++ G + K ISG+ID+++++ + I +Y Sbjct: 1046 ALASVTSILADPGFGQLFAPSSRAEVAIMGSLEVKGKKRSISGKIDRLAVTPDTVSIVDY 1105 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT+ P + +P ++ QL++Y +L+ YP +++ L++ P++ +P + ++ A Sbjct: 1106 KTNRPAPATLAEVPPAYVLQLALYRALLQPLYPGRTVKAALLFTEAPRLIELPASAMDDA 1165 Query: 944 FAEIS 948 A ++ Sbjct: 1166 LARLT 1170 >gi|86747755|ref|YP_484251.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] gi|86570783|gb|ABD05340.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris HaA2] Length = 1161 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 258/952 (27%), Positives = 435/952 (45%), Gaps = 22/952 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G++ + + + +D+ P+ + + + G+ T +AQ L+ A Sbjct: 226 LSVTLGVAAEDDCDAVERDIVDGPHLPRARW-TDGATIFDGGSKTDHDQAQRLRDALAAS 284 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + F T++ +K+ T++I P E LK+ + +R M Sbjct: 285 DTAQ-LEKYLELFFTKEAKLRKSFATKKIADPMPGFAEDLKREGARLEGLLERRRALLMR 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A L +A + K++ +LD++DLI T +L S+W+ +K+D+ ++H+ Sbjct: 344 ERTRALLVIAFDVAERIRREKQERGLLDYDDLIDRTLQML-DSGASSWVHFKLDRGVDHV 402 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 LIDE QDTS QW+++ L +F G+ RT+FAVGDEKQSI+SF GA PK Sbjct: 403 LIDEAQDTSPKQWDIVAHLIAEFTAGEGAREGIKRTVFAVGDEKQSIFSFQGAVPKEFAE 462 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + Q+R AG F + SFRS A IL VD VF P+ + + D++ + H + Sbjct: 463 RRDLLQRRFHGAGLAFEKVSFNYSFRSGATILQSVDHVFRDPDIYRSIHADTSYPL-HEA 521 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + LW V + E W + FD++ + S LA ++ I+++I + Sbjct: 522 LTDAGPSLIDLWPLEVPDDKQ----EIEGWRAPFDAVSETSPEVRLADKVRAEIASLIAS 577 Query: 360 DTIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T+ +R ++ D+LVLVR+R + + LK I V G DR LT+H+AI Sbjct: 578 GTMTGPRDDRRRLRYGDVLVLVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 634 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 DLM L +L +DDL+ LKSPLF F +DD+F++ +R + + G Sbjct: 635 IDLMNLADALLLPQDDLALAVALKSPLFGFDDDDLFRLAWRRKGSLR---AALRDKAAGD 691 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +K V+ + +Q +P F+ +LG GR + + R G E D LDEFL L Sbjct: 692 AKLTAVLHRLDTCAEQSQAETPFGFYAWLLGGDGGRARILRRLGPEANDALDEFLELALS 751 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ SLQ ++ L IKR + +EVR+MTVH AKGLE+ VVFLVDT S Sbjct: 752 FERKQPPSLQGFVAWLRAADTEIKRDMEISRDEVRVMTVHGAKGLEALVVFLVDTTSSPA 811 Query: 599 SHKHIKKMHIMPSLN--DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + + + + P +W + V + T++EY RLLYV MT Sbjct: 812 DSQRLNLIRLPGGNAQPGAPSAMVWAGRKADDPRAVEQARAAMISDTEDEYRRLLYVAMT 871 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA+D+LI+ N +WYD++ N + Y Sbjct: 872 RAADRLIVGG-CMPGNRNDVRALSWYDLISKGLENSGLAMRAVPP---PDGAVKRYCRPE 927 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776 T E + + ++ N + D + ES Sbjct: 928 DEVVETAAPDETPAAAPLILPNWLHRSAPALRAPDNLLRPSDAHDADHRRLRRGESEAQR 987 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 + RG ++H+LLQ + LP R + Y +NAK W ++ L + +++ Sbjct: 988 QRALQRGTLVHRLLQSLPDLPADARASAAARYLARNAKDWNDEDRDALAARVLQVITATR 1047 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + S +EV ++G++ + +++SG+ID++ ++ + I +YKT+ P+ + Sbjct: 1048 FAVVFAPGSRAEVPIAGRLQRHGEPVLVSGQIDRLVVTDAEVLIVDYKTNQVPPRSLAET 1107 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P ++ QL++Y +L YP + + L++ P++ I + L+ A ++ Sbjct: 1108 PPAYLRQLALYRAVLARLYPQRPVRAALLWTEAPEIMEISASALDAEQAALT 1159 >gi|110635907|ref|YP_676115.1| DNA helicase/exodeoxyribonuclease V, subunit A [Mesorhizobium sp. BNC1] gi|110286891|gb|ABG64950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Chelativorans sp. BNC1] Length = 1177 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 310/954 (32%), Positives = 475/954 (49%), Gaps = 39/954 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK-KAQTLQQASQT 59 L+ FG ES E I WP+P F +++V ++ET +L QA Sbjct: 226 LRAEFGFEETESAEAIANAAWPVPGFDAQAFSEFVEAALETDASRVLNGIVPAASQAFGE 285 Query: 60 QCIEERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R LL F T+K + + P + ++ + + + DR ++ Sbjct: 286 SDPVIRLDLLKKAFFTEKGEAYSERTFKAALKARLPGIYDRYLAAAEFLRQACDRLALFR 345 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M +T A+L +A L A YE K+ LDF DLI+ T LL ++DV W++YK+D+ I+ Sbjct: 346 MLTATTAALGIADALIARYERLKRARGFLDFNDLIMRTVRLLARQDVGPWVQYKLDRGID 405 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRV 237 HILIDE QDTS QW ++RSL E+FF GK + RT+FAVGDEKQSIYSF GAEP+ Sbjct: 406 HILIDEAQDTSPEQWRIVRSLAEEFFAGKGSRDGVERTIFAVGDEKQSIYSFQGAEPEAF 465 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 Q + AG +F + L SFRST D+L VD VFS E +GL+ D I H Sbjct: 466 AESGFRFQAQVPAAGGRFERVRLTRSFRSTEDVLRAVDLVFSREEARKGLTRDPE-PIEH 524 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 ++ R G V++W + + + + WT D A+ LA IA + + + Sbjct: 525 KAIRDSAPGYVEIWSPLSP----EVVEEPDDWTKAVDHASA--PAAKLAEVIAGKVESWL 578 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + G+ R ++ DI+VLVRKR + L+R LKN ISV G DR LT H+A Sbjct: 579 KNGEMIE-GQGRRLRPGDIMVLVRKRD--RFVHALSRSLKNRR-ISVAGADRLRLTAHIA 634 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 +KDL ALGRF+L DDLS +LKSPLF+ ED +F++ R E+ ++++ +++ A+ Sbjct: 635 VKDLTALGRFLLQPNDDLSLAAVLKSPLFDLDEDALFRLAWPRAESVSLFQALREKASA- 693 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL----GAKKGRQQFISRFGNEVIDVLDEFL 533 K Q ++ + A F +F+ +L G + R +F++R G+E DVLDEFL Sbjct: 694 DGKLQDILDTLRNWQRDAAFRPVFEFYASVLAGTAGREGARSRFVARLGHEANDVLDEFL 753 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 +F L E+ L+ L+ LE P IKR + +E+RIMTVH AKGLE+PVVFLVD Sbjct: 754 SFCLTAERTGLIGLEALLDTLEGAAPEIKREMDQSRDEIRIMTVHAAKGLEAPVVFLVDP 813 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 GS S+ H+ + +W N + +++ +EEY RLLYV Sbjct: 814 GSAPVSNSHMPCLMPFRMKELPVKGFLWRQGKDLANTVARGFEAKVREKAEEEYRRLLYV 873 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 GMTRA D+LI+C + TW+++V +F + T + E A Sbjct: 874 GMTRAEDRLIVCGYHGVRG---PAPSTWHNLVRQAFADQPG------TTELQDPEICAPV 924 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-----------TI 762 + REE+ ++ IP +L P+ P L+PS Sbjct: 925 LRFSVTPPVEMPREESRASKVETFDIPAELTRPLPPAPAIPRPLSPSGAAVLIEGGYEAA 984 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 K L+ RG +H+LLQ + L KR+ Y + WP +E + Sbjct: 985 ALKRSPVLDGAADPGFALERGTAVHRLLQALPELAPDKREIAARRYLARAGASWPPREAE 1044 Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882 ++ S+ +L + + S +EVSV G+I +SG++D+++++ + + + Sbjct: 1045 SVCRSVLAVLRDEQFAPIFAPGSRAEVSVMGEILLGGTPQAVSGKVDRLAVTAGEVLLVD 1104 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 YKT+ P+ +P +IAQL++Y ++LK YP +S+ L++ P++ + Sbjct: 1105 YKTNRPAPEHFAEVPAAYIAQLALYAELLKPLYPGRSISAALLFTEAPRLIPVS 1158 >gi|13474239|ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099] gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099] Length = 1170 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 289/965 (29%), Positives = 464/965 (48%), Gaps = 36/965 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQT 59 L + F ++ E I +WPLP F + + T ++L +QA Sbjct: 223 LFDEFHFRPGQTAEGIAASVWPLPGFLPDYFAGFAQAAESTDARSVLNNILPYARQAFAE 282 Query: 60 QCIEERFSLLSSFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 R LL+ FL P + + + + PDL E+ + I+ DR + Sbjct: 283 SDPIRRLQLLARAFLKTDGDPYDSAKAFKKALTDRLPDLAERYVSAASAIIETVDRLALF 342 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 +M + T A+LT+A +L A Y+ K+ LDF DLI T +LL + D W++YK+DQ I Sbjct: 343 RMLEGTRAALTIADWLIARYDVLKRSRGFLDFNDLITRTVNLLARPDAGPWVQYKLDQGI 402 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKR 236 +HIL+DE QDTS QWEV++ L E+FF G RT+FAVGDEKQSIYSF GA P Sbjct: 403 DHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQSIYSFQGAAPDS 462 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + + R +A F+ ++L SFRST D+L VD+VF+ P +G+S D + Sbjct: 463 FADSRLLFAGRVRDAEASFADLKLTWSFRSTDDVLAAVDRVFADPVVRRGISHDPD-PLS 521 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 H++ R G V++W + + + + W D + A +A +A TI+ Sbjct: 522 HKAIRTDAPGYVEVWPSI----GADVVDEPDDWAQAIDH--AHAPAVRVAENVAATIAGW 575 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 IG I G+ + ++ D+LVLVRKR I V G DR L H+ Sbjct: 576 IGKGEIIE-GRGKRLRPGDVLVLVRKRDS---FVHALTRALKRRDIPVAGADRLSLPGHI 631 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 A+KDL+ALG +L +DDLS +L+SP+F+ E+ +F + QR ++ +++ A Sbjct: 632 AVKDLIALGHLLLQPQDDLSLAAVLRSPIFDLPEEALFTLAAQRPPGLSLAASLRQHAGE 691 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536 + ++ + A F + + +L R++ I+R G E D+LDEFL+F Sbjct: 692 -SERLAKIVAQLDAWADEAAFKPVFELYAGLLARDDVRKRMIARLGPEAGDILDEFLSFC 750 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 L E+ L+ +S LE P IKR +EVR+MTVH AKGLE+PVVFLVD GS Sbjct: 751 LAEERTGLPGLEAFLSTLENAGPEIKREMDQTRDEVRVMTVHAAKGLEAPVVFLVDGGSA 810 Query: 597 VFSHKHIKKMHIMPSLN--DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 FS +H+ ++ D +W S N ++ +EY RLLYVG Sbjct: 811 PFSDQHLPRLMSFGGSGRNFDGKGYLWRSASDVANGFSKAAATRARELADDEYRRLLYVG 870 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA D+LI+C + ++ N TW+ +V + +++ + + Sbjct: 871 MTRAEDRLIVCGYH---GKRAPNTGTWHSIVSRALTGAPEIEQRPHPAGGE----PVHRF 923 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------- 765 + +E +Q +P LF P+ + P L+PS Sbjct: 924 HVTRLPPVAVSADEQARQADAFGPLPATLFRPLPPFEDLPRPLSPSGASALIDEGKEAVV 983 Query: 766 --GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 L++ RGL +HKLLQV+ + E +R+ Y + WP E + Sbjct: 984 DKASPVLDADAEPGFAVLRGLALHKLLQVLPGIAEGERQGAAERYLARTGAAWPPSEREK 1043 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 L S+ +L +P + + S +EV++ G + K ISG+ID+++++ + I +Y Sbjct: 1044 ALASVIAILVDPRLGQLFALSSRAEVAIMGSLQVRGKTRSISGKIDRLAVTANTVSIVDY 1103 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT+ P + +P ++ QL++Y +L+ YP + + L++ P++ +P + ++ A Sbjct: 1104 KTNRPAPVSLAEVPPAYLLQLALYRALLQPLYPGREVKAALLFTEAPRLIELPAHVMDDA 1163 Query: 944 FAEIS 948 A ++ Sbjct: 1164 LARLT 1168 >gi|39933154|ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009] gi|39652779|emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG assignment [Rhodopseudomonas palustris CGA009] Length = 1161 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 262/958 (27%), Positives = 446/958 (46%), Gaps = 32/958 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G++ +S + +D+ P S+ V+ + E G+ + + L+ A Sbjct: 224 LSATLGVAPGDSCDAADRDIVDGPNLPRSEW-AAVAATFEGGSANDQAQGRRLRAALALT 282 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + F T+ +K++IT+++ P L E+L++ + +R + Sbjct: 283 DAAQ-IEAYLQVFFTKDNGLRKSLITKKLGDGVPGLAERLQREGARLAGLLERRRALALR 341 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A L +A + + K++ +LD++DLI T +L + W+ +K+D+ ++H+ Sbjct: 342 ERTRALLVIAAQVAGNIAREKRERGLLDYDDLIDKTLAML-DSGAAGWVHFKLDRGVDHV 400 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 LIDE QDTS QW+++ L ++F G+ RT+FAVGDEKQSI+SF GA PK Sbjct: 401 LIDEAQDTSPKQWKIVARLIDEFTAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAE 460 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 ++ Q+R A ++F + SFRS A IL VD VF P + + DST + H+S Sbjct: 461 QRNELQRRFHGADKRFEKVAFNYSFRSGAAILQSVDHVFRDPAIYRSIHADSTYPL-HQS 519 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 ++ LW V Q E W + FD++ + S LA ++ I +I Sbjct: 520 LADAGPSSIDLWPLEVPDDRQQ----IEGWQAPFDAVSETSPEVRLADKVRAEIGALIAR 575 Query: 360 DT-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T G++R + D+L+LVR+R + + LK I V G DR LT+H+AI Sbjct: 576 GTQTGPMGRRRPLSYGDVLILVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 632 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 DLM L +L +DDL+ +LKSPLF +DD+FK+ QR + + Sbjct: 633 IDLMNLADALLLPQDDLALAVVLKSPLFGLDDDDLFKLAWQRKGSLRAALADHAAGDPRS 692 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNF 535 + QH + AQ +P F+ +LG GR + + R G E D LDEFL Sbjct: 693 AAVQH---RLETYAARAQAETPFGFYAWLLGGDGADSGRARILRRLGPEANDALDEFLEL 749 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L EQ SLQ ++ L + IKR + +EVR+MTVH AKGLE+PVVFL+DT S Sbjct: 750 ALSFEQKRAPSLQGFMAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTS 809 Query: 596 QVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + + + + + +W + +IV + + T++EY RLLYV Sbjct: 810 SPADTQRLNLIRLPGGNAAPGSVAAMVWAGRKADDPHIVEQARSAMIEETEDEYRRLLYV 869 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 MTRA+D+LI+ N + +WYD++ + V + + + K + Sbjct: 870 AMTRAADRLIVGG-CMPGNRNEVRPHSWYDLISRGLESSGLVMQPVPPDGVIKRYCRPED 928 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NL 770 P +P L P + +L PS + + Sbjct: 929 VIDETGAAVPSHEAVAT-------PLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPG 981 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 ES S ++ RG ++H+LLQ + + R + +NA W ++ L + Sbjct: 982 ESDASRSRALQRGTLVHRLLQSLPEIAAADRPAAAGRFLARNASDWSEEDRAALAAQVLG 1041 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 L+ + S +EV + G++ +++SG+ID++ +++ + I +YKT+H P Sbjct: 1042 LIADARFAAVFGPGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAPP 1101 Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 + P +++ QL+ Y +L YP +++ L++ ++ + + L+ A+++ Sbjct: 1102 RVEAEAPRSYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMELSASALDAEQADLT 1159 >gi|49474856|ref|YP_032897.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1] gi|49237661|emb|CAF26843.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1] Length = 1160 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 293/969 (30%), Positives = 489/969 (50%), Gaps = 47/969 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L F L+ +++ E + + + + + GN ++ + Q + Sbjct: 218 LHALFQLAPDDTNEQLLEKIQQTARLPLYALTH----CQTYGNKSLKEMIAKFSQLEEAC 273 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 E ++S+ + K P+ + ++ ++ P +++ ++ Q + + +++ K Sbjct: 274 DEENIIDIISNIYFKMKGEPRNFSRLSCKKSDEIWPFIQQTIEDKQSKLSLLLEKYQCSK 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + A+ L Y KK N LDF DLI T LLK++ S W+ YK+D ++ Sbjct: 334 IATLNKAAFQLCARYLKIYANLKKANGFLDFNDLIERTLHLLKRQGASQWVHYKLDNGLD 393 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDT+ QW++I+ L ++FF G + ++ RTLFAVGDEKQSIYSF GA P+ Sbjct: 394 HILLDEAQDTNPEQWQIIQLLAQEFFTGHSQRTNIRTLFAVGDEKQSIYSFQGAAPENFA 453 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 R+ QK+ QKF I+L SFRST D+L VD VF PEN +GLS ++T T+ H Sbjct: 454 ENGRMIQKKVQQVNQKFEKIQLNYSFRSTPDVLKSVDLVFEKPENYKGLSAENTKTV-HE 512 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R G V LW+ + + + ++W D L ++ + LA +IA TI+N + Sbjct: 513 AIRAHSPGEVILWDAISK----EKSEFPDAWHLSVDHL--DTPETRLAEKIAETIANWLH 566 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + R+++A DI+VLVRKR ++ L+R LK I + G DR LT H+++ Sbjct: 567 NGEMLPAKG-RLMRASDIMVLVRKRDH--FVSALSRALKLR-NIPIAGADRLQLTKHMSV 622 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMAL RF+L +DDLS C+LKSPLF+ SE++++++ R + + Sbjct: 623 RDLMALARFVLQPKDDLSLACVLKSPLFSLSEEELYQLAAHRTGSLWQSLCMHASHVSSH 682 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 + F+ + ++ + +F++ IL KGRQ+ ++R G+E DVLD F+++TL Sbjct: 683 ASFRDAFENLNHYRTLVDKIPVFEFYSYILNNDKGRQKILARLGSEANDVLDAFMDYTLT 742 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ LQ + L P IKR NH EVRIMTVH AKGLE+ VVFLVD GS ++ Sbjct: 743 LQKTGLPGLQAFLETLSANDPEIKREFDQNHEEVRIMTVHAAKGLEASVVFLVDPGSAIW 802 Query: 599 SHKHIKKMHIMPSLN---DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +H + PS + D IW P K + + +LK+ +EEY RLLYVGM Sbjct: 803 HSQHAPHLLKTPSSHPQWSDQQAFIWRPNEKFDTKLSQQALSYLKERAEEEYRRLLYVGM 862 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA D+L +C +S +K++ TW +V ++ ++ A+ + Sbjct: 863 TRAEDRLFVCGYSG----EKTSPHTWLQLVKNALKPH------AFVIDGPAEDIAAWRYC 912 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------ 769 P+++E + +P + + P L PS + + Sbjct: 913 ITASSYAPIKQEVPCAEYQTLPSLPTFFSHKVPEEPALPKPLRPSVASLSIEADTEISSN 972 Query: 770 ----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 E+ ++ + G I+H+LLQ + P KR+++ Y A W Sbjct: 973 LKYLSLSPVLGETNINRAFSIEYGNIVHRLLQHLPNCPAQKRRDYAQYYLNTKASHWQET 1032 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 + + L + ++L++ + S S +EVS+ G + K+ ISG+ID++ I++ +I Sbjct: 1033 QKEKALCHVWQILDHSSLKPLFSDHSRAEVSLMGIVKIRGKEQAISGQIDRLYITENSII 1092 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 ++KT P++ I ++ Q+++Y K+L+ +P+K + LL+Y E KVF +P K Sbjct: 1093 FADFKTGA-PPEDEAAIAPHYLLQMALYRKLLQAIHPDKDIQALLVYSKEVKVFKLPPKK 1151 Query: 940 LNKAFAEIS 948 L+ EI+ Sbjct: 1152 LDALLDEIA 1160 >gi|222147062|ref|YP_002548019.1| ATP-dependant DNA helicase [Agrobacterium vitis S4] gi|221734052|gb|ACM35015.1| ATP-dependant DNA helicase [Agrobacterium vitis S4] Length = 1182 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 348/955 (36%), Positives = 540/955 (56%), Gaps = 14/955 (1%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+N GL +E+ + + WPLP ++ Y+ L++ G + A TL++A + Sbjct: 232 LRNALGLQPDETEISLAEAYWPLPTLAGPQLSTYIDLALTKGGSLVQGVALTLERAVRQP 291 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R LL F T P+ +++I +NK +P L + + ++D + R+R ++ Sbjct: 292 DALIRAQLLEEAFYTGSDKPKADRSLIAAAMNKAAPHLSDAIFAARDHVVACRERLRLFR 351 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 +FK+T A+LTLA+ L+ YEE KK++ LDFEDLI T +LL + V W+ YK+DQ I+ Sbjct: 352 LFKATRAALTLAERLDHDYEELKKRSSQLDFEDLIARTAELLTRSTVGPWVHYKLDQGID 411 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS +QW VIRSL EDFF G++ RT FAVGDEKQSIYSF GA+P+R Sbjct: 412 HILVDEAQDTSPVQWSVIRSLREDFFSGQSARPVRRTFFAVGDEKQSIYSFQGAKPERFS 471 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 +E R ++ + FS + LPLSFRST +L+ VD+VFS+ ENA+GLS + + H Sbjct: 472 QEARETEQEVARGSESFSAVRLPLSFRSTNAVLSAVDQVFSVTENARGLSAVAE-PVVHM 530 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 SSRIG G V++WE + + + +E WT+ FD+ P+ + +++LARRIA I M+ Sbjct: 531 SSRIGHPGAVEVWEMIAP----EGSESEEDWTAPFDATPENAPSAMLARRIAQRIEIMLA 586 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 +TI G +R I+A DIL+LVRKR + LTR LK I V G DR LT H+A+ Sbjct: 587 RETIVEKGVERSIEAGDILILVRKR--GAFVNALTRALKRRSNIPVAGADRLRLTGHIAV 644 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+ALGRF+L DDLS +LKSPLFN SEDD+F++ +R E +V+ I + A G Sbjct: 645 QDLLALGRFVLFTADDLSLAALLKSPLFNLSEDDVFEVAARRGE-ISVFAEIARLAEAGS 703 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 K+Q + +H + +A+ PHDF+ +LG GR+ F++R G+EV D++DEFL FTL Sbjct: 704 EKWQAALARLHRYVALARDLLPHDFYGRVLGPLGGRRDFLARLGSEVSDIIDEFLTFTLS 763 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +EQ LQ I+ LEQ P +KR +EVRIMTVH +KGLE+P+VFLVD GS+ F Sbjct: 764 HEQAGLPGLQSFITTLEQEAPEVKREQDKERSEVRIMTVHASKGLEAPIVFLVDDGSKAF 823 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 +H H+ K ++ + P+W+P N + ++ + K++ +EEY RLLYVGMTRA Sbjct: 824 NHTHLPKFRMIETGAQPQECPVWVPVKAVDNPLTAEDVAKRKQAIEEEYRRLLYVGMTRA 883 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS--- 715 +D+L++C + + + + + + + W Sbjct: 884 ADRLVVCGYRGKQVQTEIWHQMVWSALELDTERCRQQGFGGPEGDWTGLLWENAVVPGRF 943 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 + ET+ + + P + +N D ++ L S Sbjct: 944 ERQEKRQEKRELETLPEALLRPAPPPPRLPRPLSPSGAGIEVNDEDGDMLLRSPLFSKGE 1003 Query: 776 DNQ-TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 D +G ++H++LQ++ LP +RK Y + A+ WPA E L+ S+ +L++ Sbjct: 1004 DAGLALQKGRLVHRMLQMLPGLPADERKPAARRYGERAARFWPAHERDRLVESVLAILDH 1063 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 P ++ S + +E S+ G I + +S R+D+++++ + + + +YKT+ P++ Sbjct: 1064 PALSEVFSSHAQTEFSLMGTIRLGAEQRAVSARVDRMAVTNEKVILLDYKTNRQPPRQES 1123 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 +P +H AQL+IY ++LK YP + + CLL+Y P V + + L+ A E+ T Sbjct: 1124 EVPLSHSAQLAIYRELLKPLYPGRVIECLLVYTEGPHVVALTEAGLHGALQELQT 1178 >gi|254502806|ref|ZP_05114957.1| double-strand break repair helicase AddA [Labrenzia alexandrii DFL-11] gi|222438877|gb|EEE45556.1| double-strand break repair helicase AddA [Labrenzia alexandrii DFL-11] Length = 1180 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 297/968 (30%), Positives = 468/968 (48%), Gaps = 41/968 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L + + + + F ++ Y ++ TG T KA+ L A + Sbjct: 234 LADDLEIDPAQQLSDFDRRFRSECPFDLNTCLSYSE-ALNTGTKTDQGKAEALVAAIRQT 292 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 FLT K +K++ T+++ + PD+ + L Q +++ D + Sbjct: 293 DPGLFREAWLPVFLTGKLEARKSLATKKVTEAFPDMVDALIAEQARLLELLDERRKVVTY 352 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 T+A L LA + +YE AK LDFEDL++ T LL K D + W++YK+DQ ++HI Sbjct: 353 AGTVALLRLADAVITYYERAKTAKGYLDFEDLVVKTATLLAKSDAAQWVQYKLDQGLDHI 412 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDTS QWEV+ +L +FFVG + RTLFAVGDEKQSIYSF GA P + Sbjct: 413 LVDEAQDTSPRQWEVVNALAAEFFVGDSGREKVRTLFAVGDEKQSIYSFQGAVPAYFDQM 472 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 +R ++A +A Q+F + L LSFRST D+L VD+VF QGLS+D + H + Sbjct: 473 RRAFSRQAQSAEQEFHSVNLQLSFRSTPDVLGAVDEVFKDASAYQGLSQDGVAPV-HEAI 531 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 R+ G V LW + + W D + S +A+RIA TI + Sbjct: 532 RLD-PGIVDLWPL----ETEAEVSEPDDWRLPVDHVGSGSPMLKVAKRIASTIKGWMLDG 586 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 T + D+++LVRKR + I G+DR ILTDH+A++D Sbjct: 587 T---------AEPGDVMILVRKRG---PFVEALNRELKNLNIPAAGSDRLILTDHIAVQD 634 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS- 479 L ALGRF+L EDDLS +LKSPLF + D+ ++ + E Q + Sbjct: 635 LAALGRFLLLPEDDLSLAAVLKSPLFGLDDMDLLEVARETDEKIRPGTLWQMLVKRSEAS 694 Query: 480 -KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 K+Q V + + + A F P++F+ +LGA GRQ F R G EV DVLDEFL T+ Sbjct: 695 TKWQEVRRQLEDWRARADFVPPYEFYARLLGADGGRQAFRRRLGVEVDDVLDEFLALTIA 754 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 EQ L+ ++ + P IKR + VRIMTVH +KGLE+ +V LVD G Sbjct: 755 YEQAGTPGLEGFLAWMAAAPTEIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGGAPV 814 Query: 599 SHKHIKKMHIMPSLNDD--PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 S H P D P +W+P R + + ++ L+K +EEY RLLYV +T Sbjct: 815 SAIHDPSFLPRPRPGHDLSPPSLVWLPPKTDRISWHDEAVETLRKGQEEEYRRLLYVALT 874 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+LI+C ++ ++ WY +V + + + + W + Sbjct: 875 RAEDRLIVCGW---EPKRGAHDNCWYSLVSAALKP-QAKELHDADGDVVGWRWQKDPSAG 930 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTNLE 771 +P D+ +P P+K ++ L PS D G + Sbjct: 931 TGRAPSPGHPRTDASVSGDDHTLPDWAHQPVKP-VSRKIRLQPSKAFEDMEDKDGIEPVP 989 Query: 772 S-------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + D+ RG ++H+LL+++ LP R ++ + K A L Sbjct: 990 AVARLAAGRQPDSWPLERGRLVHRLLELLPDLPAASRMAAAEAFLDQALKPVFAPFKDTL 1049 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKI-NCPKKDIIISGRIDQISISQQNIFIFEY 883 L + ++LE P S +S +EV+++G I + D+ +SG+ID++ + + I +Y Sbjct: 1050 LKELAQVLEKPEFQPVFSENSRAEVALTGTIRSANGTDVEVSGQIDRLIVDGNEVVIVDY 1109 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT+ P+ ++ +P + AQLS+Y+++L+ YP K++ C L++ + P + IP L++ Sbjct: 1110 KTNLQPPETLDQVPLEYRAQLSVYKELLRQIYPAKAVRCHLLWTTGPSLMEIPGELLDET 1169 Query: 944 FAEISTKI 951 F ++ ++ Sbjct: 1170 FTGLAPEV 1177 >gi|319407899|emb|CBI81553.1| ATP-dependent nuclease subunit A [Bartonella schoenbuchensis R1] Length = 1151 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 303/966 (31%), Positives = 496/966 (51%), Gaps = 50/966 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ F L NE++ I K++ + + S N Q + Sbjct: 218 LRAFFNLKPNETHSQILKEIQQTASLSPYTFKYFQTYS----NKKATDIIAKFSQLATVS 273 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 E+ ++SS + T P+ + ++++++ S +++++++ Q++ + D++ K Sbjct: 274 DEEDIIDVVSSIYFTADGIPRNFSCLFSKKLDETSSFIQKEIEEKQNKVSTLLDKYQGIK 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + +A+ + Y + KK N +LDF+DLI T LL+++ S W++YK+D+ I+ Sbjct: 334 LVTLNIAAFQICATYLKIYADLKKANGLLDFDDLIERTLYLLQRKGASQWVQYKLDRGID 393 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HILIDE QDT+ QW++I+ L ++FF + H++ RT+FAVGDEKQSIYSF GAEP+ Sbjct: 394 HILIDEAQDTNPEQWQIIQLLAQEFFADYSQHTNIRTIFAVGDEKQSIYSFQGAEPENFA 453 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R+ QK+ QKF I+L SFRSTADIL VD VF PEN +GLS D+ T+ H Sbjct: 454 KNGRMFQKQVQRINQKFEKIQLHYSFRSTADILKGVDLVFETPENYKGLSADNVKTV-HE 512 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 RI G + LW+ + + N + W D L ++ LA +IA TI+N + Sbjct: 513 PVRINSPGEIILWDTISK----ETNKLPDDWHLTVDHL--DTPEIRLANKIAATIANWLH 566 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + + R+++A DILVLVRKR D + L+R LK + + V G DR LT H+++ Sbjct: 567 SGEMLPAKG-RLLRASDILVLVRKRHD-QFVPALSRALKL-HNVPVAGADRLQLTSHISV 623 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMAL +F+L +DDLS C+LKSPLF SED ++ + T ++++ + A+ + Sbjct: 624 RDLMALAQFVLQPQDDLSLACVLKSPLFALSEDALYHL--AAKRTGSLWQSLCTHASSHV 681 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ + + + +F++ IL KGRQ+ ++R G+E ++LD F+++TL Sbjct: 682 -SYKDAFENLSKYRTFVDKMPVFEFYSHILNNDKGRQKILARLGSEANEILDAFMDYTLT 740 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ LQ + L P IKR NH EVRIMTVH AKGLES VVF VD GS ++ Sbjct: 741 IQKTGLPGLQAFLETLSANKPEIKRELDQNHEEVRIMTVHAAKGLESAVVFFVDPGSAIW 800 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 ++ P + IW P ++ + +LK+ +EEY RLLYVGMTRA Sbjct: 801 DTRYTPHFFTFP--LNGRQALIWRPNAQFDTK-FKKALSYLKERAEEEYKRLLYVGMTRA 857 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 D+LI+C +S N TW +V + K + A + Sbjct: 858 EDRLIVCGYSGQQ----ENPNTWLKLVKKALQPHTVAIKDPTEDV-------AAWRYSIT 906 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 P +T + +E + +P + + P L PS + ES + Sbjct: 907 PSSTLINKEILDEGNQTLPPLPDFFHHKMPLEPALPKPLRPSVASLFIDVDAESFPNQTH 966 Query: 779 ----------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 T G ++H+LLQ + P +R ++ Y A WP + + Sbjct: 967 LSISPVLGEKNTNKIFTIEYGNLVHRLLQYLPECPPQQRFDYAQRYLNIKASHWPEIQRE 1026 Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882 L + +LLENP + + S +S +EVS++G + K+ IISG+ID++ ++Q ++ + Sbjct: 1027 KALQQVCKLLENPHLKSLFSDNSRAEVSLTGTLKIHGKEQIISGQIDRLCVTQDSVLFAD 1086 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 +KT P++ I ++ Q+++Y K+L+ YP+K++ LIY E K+F + KL+ Sbjct: 1087 FKTG-IPPEDETTIAPNYLLQMALYRKLLQTIYPDKNIDAFLIYCKEAKIFTLTPEKLDA 1145 Query: 943 AFAEIS 948 E + Sbjct: 1146 CLNEFT 1151 >gi|115522488|ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115516435|gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisA53] Length = 1165 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 266/961 (27%), Positives = 447/961 (46%), Gaps = 32/961 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G++ + I D+ P+ + E G K+AQ L++A Sbjct: 226 LSAALGVAPKDDAASIDSDIVDGPHLPRAQWEAAAE-VFEAGGANDAKQAQRLREALDLS 284 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + S F T +K++ T++I + P L L + + + R Sbjct: 285 GHAQ-IERYLSVFCTGDGGARKSLATKKIAEADPALCAVLAREAERIGALLQRRRAVAAR 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 T A L +A + K++ +LD++DLI T +L + + W+ YK+D+ ++H+ Sbjct: 344 DRTQALLLIATSVADAIRREKQERGLLDYDDLIDKTLAMLDR-ISAGWVHYKLDRGVDHV 402 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 LIDE QDTS QW+++ L +F G+ + RT+FAVGDEKQSI+SF GA P+ Sbjct: 403 LIDEAQDTSPKQWDIVERLIAEFTAGEGARENIKRTIFAVGDEKQSIFSFQGAVPREFAE 462 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + R A F + SFRS A IL VD VF + + + D+T + H+S Sbjct: 463 RRETLRSRFQKADLSFEKVSFNYSFRSGAAILQSVDHVFRDEDIYRSIHADTTYPV-HQS 521 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + LWE E W + FD++ S LA+R+ I+ +I Sbjct: 522 LTDAGPSLIDLWELQQPDERQD----LEGWQAPFDAVSATSPEVKLAQRVQAEIAALISG 577 Query: 360 DTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T+ G +R ++ D+L+LVR+R + + LK I V G DR LT+H+AI Sbjct: 578 GTLTGPVGSRRRLRYGDVLILVRRRGSA--FDAVIQALK-RGNIPVAGADRLKLTEHIAI 634 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 DLM L +L +DDL+ LKSPLF +DD+FK+ +R + Q N Sbjct: 635 IDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWERQGSLRQALADQAATN--- 691 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 KF + +++ +A SP F+ +LG +GR + + R G+E D LDEFL L Sbjct: 692 DKFGIAQQRLNDCAKLALSQSPFSFYAWLLGGDRGRARMLRRLGHEATDALDEFLELALA 751 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ + ++LQ ++ L IKR +EVR+MTVH AKGLE+PVVFL+DT S Sbjct: 752 YERKAPATLQGFVAWLRAADTEIKRDMEIARDEVRVMTVHGAKGLEAPVVFLIDTTSSP- 810 Query: 599 SHKHIKKMHIMPSLNDDPGIP---IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + +P N PG P +W + V++ + T++EY RLLYV M Sbjct: 811 ADTQRLNLIRLPQGNAGPGTPSVMVWAGKKADDPPAVANARAAMIGDTEDEYRRLLYVAM 870 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA+D+LI+ N + + +WYD++ ER + + + Sbjct: 871 TRAADRLIVGG-CQPGNRNEVREASWYDLI---CKGLERSGLPMQEIAGPDGAVKRFCRA 926 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NLES 772 T + + + + ++P L P L PS+ + E Sbjct: 927 EDAWPETAIAATAALPEPI--AELPFWLSLPAPPLTPTERTLQPSSAEIDAARTARRGEP 984 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN--AKLWPAKEYKNLLLSITR 830 + + RG+++H+LLQ + + +R++ + +N K+WP + L + Sbjct: 985 TDARERARQRGVLVHRLLQSLPEIAPTRRRDAAAGFLGRNTDPKIWPEADRTALADRVLA 1044 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHV 889 L+ +P + + S +EV + G++ P ++SG+ID++ +S + + I ++KT+ Sbjct: 1045 LIADPRFASVFAEGSRAEVPIIGRLRQPGGVPFLVSGQIDRLVVSDEAVLIVDFKTNQTP 1104 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 P +P T++ QL++Y +L +P+K + L++ P++ I L++ I + Sbjct: 1105 PGNESEVPVTYLRQLALYRAVLARLHPSKPVRAALLWTEAPEMMEISSVALDRELVAIMS 1164 Query: 950 K 950 Sbjct: 1165 A 1165 >gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis KC583] gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis KC583] Length = 1155 Score = 593 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 308/968 (31%), Positives = 506/968 (52%), Gaps = 51/968 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ F L+++E+++ + + + + GN Q T Sbjct: 218 LRQLFNLAVDETHQRLLEKIKQTALLSP----HAMKYYQTNGNSKAKNIIADFLQLVSTS 273 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 E +L+S+ +LT P+ + + + ++ P ++++++K Q++ + +++ + Sbjct: 274 DEENIITLVSNIYLTTTGKPRDFSRLFSNKSDEIWPFVQKEIEKKQNQLSTLLEKYQCVQ 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + +A L Y + KK N +LDF+DLI T LL++R S W++YK+D I+ Sbjct: 334 LVTLNMAVFQLCSLYLKIYADLKKANGLLDFDDLIERTLHLLQRRGASQWVQYKLDHGID 393 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDT+ QW++I+ L ++FF G + ++ RT+FAVGDEKQSIYSF GAEP+ Sbjct: 394 HILLDEAQDTNPAQWQIIQLLAKEFFTGDSQRTNTRTIFAVGDEKQSIYSFQGAEPENFA 453 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R+ QK+ + +KF I+L SFRSTAD+L VD VF PEN +GLS D+ T+ H Sbjct: 454 KNGRMIQKQIQHVNEKFEKIQLHYSFRSTADVLKSVDLVFETPENYKGLSADNAKTV-HE 512 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 R+ G V +W+ + Q + + W S D L ++ LA +IA TI++ + Sbjct: 513 PIRVNSPGDVIVWDVISK----QTSTLPDDWHSTVDHL--DTPEVRLADKIATTIADWLQ 566 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + R+++A DI++LVRKR + L+R LK I V G DR LT H+++ Sbjct: 567 KGEMLPAKG-RLLRASDIMILVRKRDQ--FVPALSRALKLR-NIPVAGADRLQLTSHISV 622 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMAL RF+L +DDLS C+LKSPLF SE+ ++++ T ++++ + A+ Sbjct: 623 QDLMALARFVLHPKDDLSLACVLKSPLFALSEEALYQL--AAQRTGSLWQSLNAHASSHD 680 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 F+ + + + + + +F++ IL KGRQ+ ++R G E +VLD F+++TL Sbjct: 681 Y-FKEIFENLSKYRALVDQIPVFEFYSHILNNDKGRQKILARLGPESNEVLDAFMDYTLT 739 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ LQ + L + P IKR NH EVRIMTVH AKGLE+ VVFLVD+GS ++ Sbjct: 740 IQKTGLPGLQAFLETLSKNEPEIKRELDQNHEEVRIMTVHAAKGLEASVVFLVDSGSAIW 799 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + +P + IW P ++ + + HLK+S +EEY RLLYVGMTRA Sbjct: 800 NSHYAPHFFKLP--LNGKQAFIWRPNAEFKTKPFEKALSHLKESAEEEYRRLLYVGMTRA 857 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 D+LIIC + ++K+ TW +V ++ +K + D+ A+ +S Sbjct: 858 EDRLIICGY----SQKREVPNTWLHLVKNA------LKPYAVPTKGPADDIAAWRYSITP 907 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 + P++++ + + +P I + P IL PS + T+ E L Q Sbjct: 908 STSFPIDQKILGEASQEFPPLPAFFHHKIPAESALPKILKPSVTNFATDTDSEIELFSAQ 967 Query: 779 ------------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 + G +IHKLLQ + P KR+++ Y A W + Sbjct: 968 KILNVSPILEAKNTNKAFSIEYGNLIHKLLQYLPDCPPEKRQDYAQQYLNIKASHWDDTK 1027 Query: 821 YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880 N L I +L+NP + S S +EVS+ G + K+ +ISGRID++ I+Q I Sbjct: 1028 KNNALHDIWAILDNPHLKLLFSDSSRAEVSLMGIVKIRGKEQMISGRIDRLCITQDCILF 1087 Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 ++KT P++ I + +Q+++Y K+L+ YP K++ LIY K+F + KL Sbjct: 1088 ADFKTG-TPPEDETAITQNYWSQMALYRKMLQTIYPEKTIQAFLIYSQGAKIFTLLPKKL 1146 Query: 941 NKAFAEIS 948 + EI+ Sbjct: 1147 DTLLDEIA 1154 >gi|114705059|ref|ZP_01437967.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506] gi|114539844|gb|EAU42964.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506] Length = 1211 Score = 593 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 297/981 (30%), Positives = 482/981 (49%), Gaps = 38/981 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L + G+ N I L P+P S L+ + T + A++L + Sbjct: 230 LADALGIDPNTDEAAIISVLGPIPGLDPSTCEIVRHLAERSDKKTDQRLAESLPDLAAAA 289 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 ER +LL +TQ + ++ T+ + + PDL E++ ++Q+ DR K+F Sbjct: 290 DPLERLALLKQIVMTQAGGRRASVATKVVTGELPDLDERVAEAQEYVETAEDRLAALKLF 349 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 +++ A+L +A L Y K++ LDF DLI T DLL + + ++W+ YK+DQ I+HI Sbjct: 350 RASRAALVIADALERDYALLKRRRGRLDFTDLIARTADLLTRSEAASWVHYKLDQGIDHI 409 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 LIDE QDTS QW+V+R L ++FFVG++TH+ RT+FAVGDEKQSIYSF GA P E Sbjct: 410 LIDEAQDTSPRQWQVMRQLVDEFFVGRSTHNRTRTVFAVGDEKQSIYSFQGASPHMFDLE 469 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 +R+ + +A AG KF+ + L SFR+ +L VD+VF PEN +GLS H S+ Sbjct: 470 RRVVKAKADEAGLKFTPVSLNQSFRTLETVLGAVDQVFEAPENRRGLSTGGERPT-HTSA 528 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 R G V++W + ++ + ++W D P+ S A LA+RIA I+ + D Sbjct: 529 RQDGEGLVEIWPTIR----AESTVEPDNWLDPMDEEPKSSPAYRLAQRIADQIAEWL-GD 583 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 I G+ R + D+++LVRKR + + ISV G DR +T+H+A++D Sbjct: 584 PIVEKGRIRPLDPGDVMILVRKRTN---FIPAMAAALRERGISVAGADRLTITEHIAVQD 640 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------------- 466 L+ALGR + EDDLS +LKSPLF F++D++ + R E + Sbjct: 641 LIALGRVAANFEDDLSLAALLKSPLFEFTDDELMALALSRGPLEHLSAGLRKLGGEEGPG 700 Query: 467 ----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + A + K H I+ + EL + F S F+ ILG + GR + ++R G Sbjct: 701 RVPDWFPDGEPAARLLEKAHHAIERLDELRNRTGFESVFTFYARILGPEGGRSKLMARLG 760 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 + DV+D FL+ L + S L +S+LE PP IKR EVRIMT H +KG Sbjct: 761 RDTADVIDAFLDLALSEDTAGVSGLDAFLSDLEAAPPEIKREMEGGRGEVRIMTTHASKG 820 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPS----LNDDPGIPIWIPQSKSRNNIVSDLIKH 638 LE+PVVFLVD GS F H ++ L D +W + N+ ++ L + Sbjct: 821 LEAPVVFLVDPGSAPFHGSHGSRLMRWEEMPRLLADQAPGFLWRAAKEVENSAIAALREI 880 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 K+ +EEY RLLYVGMTRA+++L+IC + T + R + + Sbjct: 881 EKQRAEEEYRRLLYVGMTRAAERLVICGMAGTRGPSEEAWREKVESALKPHAEEITDMAG 940 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 + + R + +L +E P+ L E L Sbjct: 941 DPVCWRIGSRRMGKPETERPDAANLAVRALDLSRLEEEVAPPRPLTPSSAGAAFEADELE 1000 Query: 759 PSTIDTK-------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811 S ++ + L + + + RGL++H+LLQ + TL +R+ +Y + Sbjct: 1001 SSVLEEQNTAETAYASPVLGTAATPSLGIQRGLVVHRLLQHLPTLASEERERAAEAYVRR 1060 Query: 812 NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871 K LL S+ RL+++P + S +EV+++G + + + ++G ID++ Sbjct: 1061 ALPQVGDTHRKQLLASVQRLMDDPAYAAIFAEGSRAEVAIAGTVRIGRTNYAVNGTIDRL 1120 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 ++ +++ I +YKT+ PQ + +P ++ QL+IY ++ YP++ + L++ P Sbjct: 1121 VVTDRDVLIVDYKTNRPPPQTLAEVPKDYVRQLAIYRALVMQLYPHRPVRTALLFTEGPH 1180 Query: 932 VFIIPQNKLNKAFAEISTKIP 952 + + + A + P Sbjct: 1181 FIALDEAMMEGALGNMENGSP 1201 >gi|23016111|ref|ZP_00055871.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Magnetospirillum magnetotacticum MS-1] Length = 1154 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 266/951 (27%), Positives = 451/951 (47%), Gaps = 27/951 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-T 59 L+ R GL +S + +F + V + G+ + K+A + + Sbjct: 225 LRARLGLEAGDSPVSLLAWAVDEAHFDAPALRAAVEAML-GGSDSDAKRAADMARFLAEP 283 Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 + + F + F+T K T +K + T+ + K P + L + +++ ++ ++ Sbjct: 284 ERRADLFEEWCAVFITDKGTIRKTLATKAVYKALPTAEPVLAAEAERLLRLTEKLKAARI 343 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 ++T A LTL L Y AK ++D++DLI+ DLL + V+ W+ YK+D I+H Sbjct: 344 LEATQALLTLGGALLQSYRRAKSIRALMDYDDLILGARDLLAQPGVAPWVLYKLDGGIDH 403 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+ QW V+ LTE+FF G+ S RT+FAVGD KQSIYSF A+P+ R Sbjct: 404 VLIDEAQDTNPDQWAVVEKLTEEFFAGRGARESLRTVFAVGDAKQSIYSFQRADPREFER 463 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 ++ AG K+ +++L LSFRS +L V+ VF+ + + I H Sbjct: 464 MRQAFAAHVPAAGGKWDVVDLNLSFRSAPSVLDAVNAVFAPGQPGRDGVAGDED-ITHLP 522 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 R GQ G V++W V + + +W + + +S + LAR +A I MI Sbjct: 523 HRGGQAGRVEVWPAVEPRPTDEPP----AWKPPVERIRGDSPRTRLARLVASRIRAMIDG 578 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + + S R ++A D+LVLVR+R + L R LK+ + V G DR +LT+ +A+ Sbjct: 579 EMLESKA--RPVRAGDVLVLVRRRGG--FVEDLVRELKSRK-VEVAGADRMVLTEQMAVM 633 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DLMALG F+L EDDL+ +LK PL +E+ +F + R E ++E +++ Sbjct: 634 DLMALGNFLLLPEDDLTLATVLKGPLVGLTEEQLFTLAHHRGEDVGLWEALRRGVAHEGG 693 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 F+ + + +L+ A SPH + +LG GR+ ++R G E D +DEF++ TL Sbjct: 694 VFEMAFRQLSQLLAQADHVSPHTLYARVLGPLGGRRNLLARLGLEAEDAIDEFMSLTLAF 753 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ SLQ + LE IKR + VRIMTVH +KGL++P+VFL DT Sbjct: 754 ERAHPPSLQGFLHWLEAGALEIKRDLEQGGRDAVRIMTVHGSKGLQAPIVFLPDTMQVP- 812 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++ + +P W P+++ + + + K S + EY RLLYV MTRA Sbjct: 813 ----TRSPRLLWLGEGEEELPAWPPRAEDMDAVCRRGAEARKLSREREYRRLLYVAMTRA 868 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 D+LI+C K + + W+ +V + + + Sbjct: 869 EDRLILCGWRGL---KAAPETCWHALVQGALAATAAEFDDPFLVQAGETAEAPVLVLANA 925 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 +P + + P L PS + T L + Sbjct: 926 QTAPAETGSAAGPGERPAAALPDWASLSAEPEPVPPRPLAPSRPEGDEPTVRSPLAEADG 985 Query: 779 --TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 + RG +IH+LLQ + LP +R + + + A E + ++ +L++P Sbjct: 986 KPRWQRGKLIHRLLQTVPELPGPERSRAMLRFLGRPAWGLETAEQLAIANEVSDILDHPG 1045 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + S +EV + G+I D ++SGR+D++ +S+ + + +YKT+ P + + Sbjct: 1046 LAGLFGPGSKAEVPLVGRI----GDRVVSGRVDRLVVSESEVVVADYKTNRRPPATPDEV 1101 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 P ++ Q++ Y L YP+ + C+L++ P++ I +L+ A A + Sbjct: 1102 PDLYVRQMAAYRLALACIYPHHRIRCVLVWTDGPRLTEITSARLDDALAGL 1152 >gi|240849707|ref|YP_002971095.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup] gi|240266830|gb|ACS50418.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup] Length = 1158 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 294/969 (30%), Positives = 486/969 (50%), Gaps = 50/969 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ F L+ +E+ + + + + + +N + G+ + + L Q + Sbjct: 218 LRALFNLAPDETNQCLLEQIKQTARLPLYALNHCET----NGSQSCKDMVEKLSQLEKVH 273 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +++S + T K P+K ++ ++ ++ P +++ L+ Q++ + +++ K Sbjct: 274 DETNILNIISDIYFTIKGEPRKFSHLSRKKSDQIWPFIQQMLEDKQNKLSILLEKYQCAK 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + +A+ L Y KK N LDF+DLI T LL+++ S W+ YK+D+ ++ Sbjct: 334 VATLNMAAFQLCAVYLKIYTNLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDRGLD 393 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDT+ QW++I+ L ++FF G + ++ RTLFAVGDEKQSIYSF GA P+ Sbjct: 394 HILLDEAQDTNPEQWQIIQLLAQEFFSGYSQRTNIRTLFAVGDEKQSIYSFQGAAPENFA 453 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 RI QK+ Q+F I+L SFRSTAD+L VD VF PEN +GLS ++T T+ H Sbjct: 454 ENGRIIQKKVQQTNQQFEKIQLHYSFRSTADVLKSVDIVFETPENYKGLSAENTKTV-HE 512 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R+ G V +W+ + + + W D L ++ LA +IA TI+N + Sbjct: 513 AIRVHSPGEVVIWDAIS----QETSEFPHDWHLSVDHL--DTPEVRLAEKIAETIANWLQ 566 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + R+I+A DI++LVRKR I V G DR LT H++I Sbjct: 567 KGEMLPAKG-RLIRASDIMILVRKRDQ---FVSALSRAFKHRNIPVAGADRLQLTKHISI 622 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMAL RF+L +DDLS C+LKSPLF SE++++++ R T ++++ + A Sbjct: 623 RDLMALARFVLQPQDDLSLACVLKSPLFALSEEELYQLAAHR--TGSLWQSLFTHA-SSQ 679 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 + F+ + ++ + +F+ IL KGRQ+ +SR G+E DVLD F+++TL Sbjct: 680 ASFKDAFEKLNHYRALVDKIPVFEFYNHILNNDKGRQKILSRLGSEANDVLDAFMDYTLT 739 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ LQ + L P IKR N+ E+RIMTVH AKGLE+ +VFLVD GS ++ Sbjct: 740 IQKTGLPGLQAFLETLSASEPEIKREFEQNNEEIRIMTVHAAKGLEAAIVFLVDPGSAIW 799 Query: 599 SHKHIKKMHIMP---SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +H + +P + + IW P K + I HLK+ +EEY RLLYVGM Sbjct: 800 HPQHAPHLLKVPLNNAKWNGKQAFIWRPNEKFDTKLSKQAISHLKERAEEEYRRLLYVGM 859 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA D+L IC + + TW +V + K + ++ A+ + Sbjct: 860 TRAEDRLFICGYKGQKTQ----SHTWLQLVKKALEPHALAIKDSV------EDIAAWRFC 909 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 P + + + + +P + + P L PS + + E S Sbjct: 910 ITPPSSVSINPKVPCAECQTLPPLPAFFSHKVPEEPVLPKPLKPSVASLSIEADTELSSS 969 Query: 776 DNQ----------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 Q + G I+H+LLQ + P KR+++ +Y A W Sbjct: 970 PKQLTISPVLGATNTNRAFSIEYGNIVHRLLQYLPDYPLQKRRDYARNYLNIKASHWYES 1029 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 + ++ L + ++L++ + S S +EVS+ G + K+ ISG+ID++ I+Q +I Sbjct: 1030 QREDALRHVWKILDHVYLKPLFSEHSRAEVSLMGIVKIRGKEHAISGQIDRLYITQNSII 1089 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 ++KT P+ I H Q+++Y K+L+ +P+K + LLIY E K+F + K Sbjct: 1090 FADFKTG-TPPENEAAIASHHWLQMALYRKLLQAIHPDKDIQALLIYSKEAKIFKLSPEK 1148 Query: 940 LNKAFAEIS 948 L E++ Sbjct: 1149 LEAFLGEVA 1157 >gi|27375863|ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110] gi|27349001|dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110] Length = 1180 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 254/949 (26%), Positives = 447/949 (47%), Gaps = 30/949 (3%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 G+ + E + ++ P+ S + ++ ++E G+ + +A L++A + Sbjct: 242 LGVDAADRIEDVETEILDGPFLPRSRWD-DIAFALEDGSKSDNDQASRLREA-KAFSGGA 299 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 + FLT + P+K ++T++ +P + + + ++ M T Sbjct: 300 QVDAYLGVFLTDEKLPRKAVLTKKFCDHNPSVARLFENEAQRLAGLIEKRRAVTMRDRTA 359 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 A L +A A+Y K++ +LD++DLI T +L + S W+ YK+D+ ++H+LIDE Sbjct: 360 ALLHIATAAAANYRREKQERGLLDYDDLIDKTLAMLNR-VSSGWVHYKLDRGVDHVLIDE 418 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 QDTS QW+++ + +F G+ RT+FAVGDEKQSI+SF GA+P+ +R Sbjct: 419 AQDTSPRQWDIVAHIISEFTAGEGAREGLNRTIFAVGDEKQSIFSFQGAQPREFDARRRE 478 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 ++ T AG KF + SFRS A IL VD VF P + + H + Sbjct: 479 LHRKFTAAGLKFDPVAFTYSFRSGAAILHSVDHVFRDPAIYKSIHSVEIGHPLHNALADA 538 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 ++LW+ + E W + FD + S LARRI I ++ + T+ Sbjct: 539 GPSVIELWDLAEADDRQD----IEGWRAPFDGVAVTSPEVKLARRIQAEIKRLVESGTLT 594 Query: 364 -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 G++R ++ D+L+LVR+R + + + LK + V G DR LT+H+ I DLM Sbjct: 595 GHEGERRPLRYGDMLILVRRRGNA--FDAVIQALK-HAGVPVAGADRLKLTEHIGIIDLM 651 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L +L +DDL+ LKSPLF +DD+F + R ++ + + A G KF Sbjct: 652 NLADALLLPQDDLALAVALKSPLFGLDDDDLFALAWGRK--GSLRRALGEQA-AGSEKFA 708 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 V++ + A+ +P F+ +LG GR + + R G+E D LDEFL L E+ Sbjct: 709 AVLRRLEACETRAREETPFAFYAWLLGGDGGRARILRRLGHEANDALDEFLELALNYERK 768 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 + +SLQ ++ L +KR + +EVR+MTVH AKGLE+ VVF+VDT S + Sbjct: 769 APASLQGFMAWLRSADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFMVDTTSSPADSQR 828 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 ++ + + + + +W + V++ K + + T++EY RLLYV MTRA+D+L Sbjct: 829 VRLIQV--PRGNGGEVVVWAGRKADDPKPVAEARKAMLEETEDEYRRLLYVAMTRAADRL 886 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 I+ N + + +WYD+V E + + Sbjct: 887 IVGG-CMPGNMRTVRKLSWYDLVDTGLTGSGL--------EKQTLETPLGKVTRFARPED 937 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS---TIDTKGKTNLESLLSDNQT 779 + + +P L +P ++ + + PS + + ES+ S Sbjct: 938 VVALGTPATFVDQTIALPDWLRTPAPREMQDDDSVRPSGQSAEGGRAVRSGESVQSRALA 997 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839 RG ++H+LLQ + + +R+ + +NA W + L + L+ P Sbjct: 998 LQRGTLVHRLLQSLPDIAAERRREAARGFMARNASDWAEADRTALADKVLALIAEPRFAP 1057 Query: 840 AMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 + S +EV++ G++ P + ++SG+ID++ + + I ++KT+ P+ P Sbjct: 1058 VFAAGSRAEVAIVGRLERPGLQPALVSGQIDRLVVRPDEVLIVDFKTNQAAPKSATEAPA 1117 Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 ++ QL++Y +L YP K + +L++ + I L+ A A + Sbjct: 1118 VYVRQLALYRAVLARLYPQKPVRAVLLWTEALEYMEISAPALDAALASL 1166 >gi|90421911|ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gi|90103925|gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisB18] Length = 1164 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 284/957 (29%), Positives = 462/957 (48%), Gaps = 25/957 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G++ ++S + +++ P + K S+ +E G+ T +A+ L+QA+ Sbjct: 226 LSAALGVAPDDSCAAVDQEIVDGPNLPRARWEKAASI-LEGGSKTDGDQAERLRQAATL- 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 ++ + FLT+ FTP+K + T++I PDL +K+ + + +R + Sbjct: 284 TGNDQIARYLQIFLTKDFTPRKTLATKKITDARPDLVAAMKRECERIGPLLERRRALALR 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A L +A + A Y K+ +LD++DLI T D+L + S W+ YK+D+ ++H+ Sbjct: 344 ERTQALLVIASDVAADYARQKQDRGLLDYDDLIDKTLDMLNR-ISSGWVHYKLDRGVDHV 402 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 LIDE QDTS QW+++ L +F G RT+FAVGDEKQSI+SF GA P+ Sbjct: 403 LIDEAQDTSPRQWDIVDHLIAEFTAGVGARDVKRTIFAVGDEKQSIFSFQGASPREFALR 462 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + Q R NA KF I SFRS A IL VD VF + + D+T I H S Sbjct: 463 RSALQTRFRNAELKFDPISFNYSFRSGAAILQSVDHVFRDQAIYRSIHADTTYPI-HESL 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + LWE E W + FD+LP+ S L++R+ I+ +IG Sbjct: 522 ADAGPSLIDLWELQQPDERQD----LEGWRAPFDALPETSPEVKLSQRVQAEIAELIGNG 577 Query: 361 TIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 T+ G +R ++ D+L+LVR+R + + LK I V G DR LT+H+AI Sbjct: 578 TLTGPKGDRRALRYGDVLILVRRR--GKAFDAIIQALK-RGGIPVAGADRLKLTEHIAII 634 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DLM L +L +DDL+ LKSPLF +DD+FK+ QR ++ + + A Sbjct: 635 DLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQRK--GSLRDALAAHAAE-DG 691 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 KF + + + A+ +P F+ +LG GR + + R G+E D LDEFL L Sbjct: 692 KFNTAHRRLQDCEKRARADTPFAFYAWLLGGDGGRARILRRLGHEATDALDEFLELALGY 751 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E+ + +SLQ ++ L +KR + +EVR+MTVH AKGLE+PVVFLVDT S Sbjct: 752 ERKAPASLQGFMAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEAPVVFLVDTTSSPAD 811 Query: 600 HKHIK--KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + + + P + +W + +V++ + T++EY RLLYV MTR Sbjct: 812 TQRLNLVHLPQGNAALSGPSVAVWAGKKADDPPVVANARAAMIAETEDEYRRLLYVAMTR 871 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A+D+LI+ N + +WYD++ + Y Sbjct: 872 AADRLIVGG-CQPGNRAEVRPLSWYDLICKGLEGSGLAMQTVPP---PDGVVKRYCRQED 927 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-TIDTKGKTNLESLLSD 776 Q +P L P +L PS D++ +S Sbjct: 928 LVPEQDQAAAPPRVAAPAPQPLPAWLNQPAAPTPLAERVLRPSDDADSRRSRAEDSSAPR 987 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL--WPAKEYKNLLLSITRLLEN 834 Q RG ++H+LLQ + LP +R Y +NAK W + L +S+ L+++ Sbjct: 988 AQARQRGQLVHRLLQSLPELPRERRAAAAARYLARNAKDPVWTEPDRAALAVSVLALIDD 1047 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 P + S +EV ++G++ D +++SG+ID++ ++ + + ++KT+ P+ + Sbjct: 1048 PRLAALFGPGSRAEVPIAGRLTRLGGDTVLVSGQIDRLLVTPSEVLLVDFKTNQAPPRAL 1107 Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 IP ++ QL++Y +L + YP ++L LI+ ++ I N L+ A I + Sbjct: 1108 AEIPSGYLRQLALYRAVLANLYPGRTLRAALIWSEVAEIMEISDNALDAGLAAIMSA 1164 >gi|307942842|ref|ZP_07658187.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4] gi|307773638|gb|EFO32854.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4] Length = 1174 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 290/966 (30%), Positives = 449/966 (46%), Gaps = 38/966 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G+S + F + Y + G+ LK A L A+ Sbjct: 225 LAAELGISETSDLAALEARFLSECPFDPNTCLSYAE-AFRAGSGNDLKMADALAGAAVIT 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 E+ FLTQK P+K + + + + P + + L Q + + + N F Sbjct: 284 DPEKFKKHWLPLFLTQKMEPRKKLANKGVAEAYPAVIDALVAEQQRLLDLLEERNLIVTF 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 T A L LA + YE AK LDFEDL++ T LL + D + W++YK+DQ ++HI Sbjct: 344 VGTRALLELAHAVIERYENAKMAKGYLDFEDLVVKTARLLARSDAALWVQYKLDQGLDHI 403 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDTS QW+V+ SL +FF G++ RTLFAVGDEKQSIYSF GA P Sbjct: 404 LVDEAQDTSPRQWQVVSSLAAEFFSGESASDRVRTLFAVGDEKQSIYSFQGAVPAYFDAM 463 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 +R K A A F ++L LSFRST D+L VDKVF + QGLS++ + H + Sbjct: 464 RRQFSKHAEAAQHTFHSVDLQLSFRSTPDVLGAVDKVFKESDAYQGLSQELKAPV-HEAI 522 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 R G V++W + E W D + S + +A+RI+ I + + Sbjct: 523 RRD-PGLVEIWPL----EQEADVVEPEDWREPIDHVGISSPPARVAQRISTAIRDWMEKG 577 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + DI+VLVRKR + I V G+DR +LTDH+A++D Sbjct: 578 E---------VAPGDIMVLVRKRG---AFVEILNRELKQRGIPVAGSDRLVLTDHIAVQD 625 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---RHETETVYEYIQKFANCG 477 L ALGRF+L EDDLS +LKSPLF +++D+ +I R T+++ + Sbjct: 626 LAALGRFLLLSEDDLSLAAVLKSPLFQLTDEDLLEIARDPDGRRRAGTLWQGLVSRGMDM 685 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 K++ V + A F P +F++ +L A GR+QF R G EV DVLDEFLN TL Sbjct: 686 -PKWEKVRSRLDIWRARADFMPPFEFYSRLLSADGGRRQFRKRLGVEVDDVLDEFLNLTL 744 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 EQ L+ ++ + P IKR ++ VR+MTVH +KGLE+ VV LVD GS+ Sbjct: 745 AYEQTGTPGLEGFLAWMAAAPTEIKRELTSTKGLVRVMTVHGSKGLEAKVVILVDPGSKP 804 Query: 598 FSHKHIKKMHIMPSLNDD-PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + H S P +W+P R + I+ ++ EEY RLLYV +T Sbjct: 805 VNATHDPAFLPRESGVAGAPPALVWLPTKADRTQWHNSAIEARHETQAEEYRRLLYVALT 864 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+L++C S ++ + + + + T + E Sbjct: 865 RAEDRLVVCGWEPKSGAPENGWYNLVSRALTADAREIKNTVGETTAWQWQRAANDPEVMD 924 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTNLE 771 + + ET L P+ L P+K L PS + + + + Sbjct: 925 LQETHHSDAQTETAPMLDLPPPPPQWLAKPVKPLPR-KRRLQPSKVFEVMEEKERIDPVP 983 Query: 772 -------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 L + RG I+H+LL+V+ +P R I + + L Sbjct: 984 TSARLKSRLADPSWPLERGRIVHRLLEVLPEMPAEDRDGAIDRFLDASLPDAFKARKSEL 1043 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEY 883 I ++L + + + + +EV V+G I +I +SG+ID++ ++ I +Y Sbjct: 1044 SDEIQKILLSEEFASLFAETARAEVPVAGTILTTGGAEIAVSGQIDRLVECPDHVLIVDY 1103 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT+ VP+ E + + AQLS+Y ++LK + K+++ L++ S+P + ++P + L + Sbjct: 1104 KTNVSVPRHPEEVSAEYRAQLSVYRELLKGVFSGKAIMAALLWTSQPALMLMPDDLLEET 1163 Query: 944 FAEIST 949 F + Sbjct: 1164 FKGLKP 1169 >gi|85714148|ref|ZP_01045137.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] gi|85699274|gb|EAQ37142.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] Length = 1176 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 269/957 (28%), Positives = 438/957 (45%), Gaps = 30/957 (3%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 + G+ +E E + +++ P S +L + TG+ +K+A+ L+ A Sbjct: 239 DALGVDPDERVEAVEREIIEGPNLPRSIWLDTAAL-IATGSSNDIKQAERLRAAHAEVGD 297 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 R FLT +P+K+ +T++I+ PD+ E L + + +R + Sbjct: 298 AARADRYLDVFLTADGSPRKSFVTRKISDVRPDIAEMLADECQRVVALLERRRAINIRDR 357 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T + L +A + A+Y+ K + +LD++DLI T +L+ W+ YK+D+ ++H+LI Sbjct: 358 TQSLLVIAAAVAANYQRDKHERGLLDYDDLIDKTLRMLE-HTSPGWVHYKLDRGVDHVLI 416 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DE QDTS QW+++ + DF G+ RT+FAVGDEKQSI+SF GA P+ + Sbjct: 417 DEAQDTSPKQWDIVERIIADFTTGEGAREGVKRTVFAVGDEKQSIFSFQGAAPREFDERR 476 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 R +++ +A F + SFRS IL VD VF PE + + H S Sbjct: 477 RKLERKFADAKLPFCKEDFIYSFRSGKTILESVDHVFRDPEIYASIHAVGAHPV-HESLA 535 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 G V LW + + W + FD++ S LARRI I +I Sbjct: 536 DAAPGIVDLWSLEEREKHEEIEG----WPAPFDNVTATSPEVKLARRIRNEIKALIAQGV 591 Query: 362 IFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + + G +R + DILVLVR+R + + + LK I V G DR LT+H+AI D Sbjct: 592 MTGHLGNRRPLGYGDILVLVRRRGNA--FDAVIQALK-QSGIPVAGADRLKLTEHVAIID 648 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 LM+L +L DDL+ LKSPLF +DD+FK+ QR + K Sbjct: 649 LMSLADALLLPRDDLALAVALKSPLFGLDDDDLFKLAWQRKGSLRDALAGHA---PTDDK 705 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLIL----GAKKGRQQFISRFGNEVIDVLDEFLNFT 536 F+ + + A +P FF +L G++ GR++ + R G+E D LDEFL Sbjct: 706 FRDAFERLKRCESRAARETPFAFFAWLLGGQGGSEGGRRRILRRLGHEANDALDEFLELA 765 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 L E+ + +SLQ ++ L +KR NEVR+MTVH AKGLE+ VVFL DT + Sbjct: 766 LTYERKAPASLQGFMAWLRAADTEVKRDMEITRNEVRVMTVHGAKGLEASVVFLADTSTS 825 Query: 597 VFSHKHIKKMHIMPS--LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + + + + G+ IW V+ + T+ EY RLLYV Sbjct: 826 PADTERLSLIRMARGNAPAGGGGVTIWAGSKVEDPPCVALARASMTAETEHEYRRLLYVA 885 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA+D+LI+ +N K + +WY ++ N + + + Sbjct: 886 MTRAADRLIVGG-CKPANRKDIREFSWYHLIEKGLGNSGLAMQE------IETSNGKVKR 938 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 T E +P L + L PS D ++ Sbjct: 939 FTRPGEAASDAAGPAGPAAAAGITLPSWLHRMAAPEAPATRSLQPSDTDEAARSPAGEPA 998 Query: 775 SD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833 + RG + H+LLQ + P +R++ SY +NA W A E L+ + +L+ Sbjct: 999 DQHRRARLRGTLAHRLLQSLPEAPRERRRDAALSYLARNANDWSAAERDALVTRVMAVLD 1058 Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 + + S +EV+++G++ + D +++SG+ID++ ++ + + +YKT P+ Sbjct: 1059 DARFAPVFAEGSRAEVAIAGRLTTRRGDTLLVSGQIDRLVVTPDEVLVVDYKTSRAPPRN 1118 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 + +P HI QL++Y IL YP + L++ ++ I L+ I + Sbjct: 1119 LADVPQAHIRQLALYRAILASLYPKLPVKAALLWTEALEMMEISAPTLDAGLDAIIS 1175 >gi|288959562|ref|YP_003449903.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510] gi|288911870|dbj|BAI73359.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510] Length = 1158 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 260/956 (27%), Positives = 445/956 (46%), Gaps = 37/956 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + + + + E I + + ++ G+ ++ +Q Sbjct: 214 IHDTLTVPPGVTEESILTHACHDDQCDPPALREACR-ALSGGSAGDQERGIAIQHWLDAA 272 Query: 61 CI-EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 F FLT + +P+K ++T++ P L+K + ++I +R + Sbjct: 273 DRRVRAFEAYKRLFLTAEGSPRKTLMTKKPATAYPQALTSLRKEAERLVEIAERVKAAGV 332 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK----KRDVSAWIRYKIDQ 175 ST A LTLA+ + Y E K +LD++DLI+ N LL K W+ YK+D Sbjct: 333 AASTTALLTLAQAMLDAYRERKAARALLDYDDLILAANRLLGGGDGKAPRVPWVLYKLDG 392 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT---HSSPRTLFAVGDEKQSIYSFHGA 232 ++HILIDE QDT+ QW ++ +L +FF RT+FAVGDEKQSI+SF A Sbjct: 393 GLDHILIDEAQDTNPDQWAIVAALAGEFFAELEAAATDGKIRTVFAVGDEKQSIFSFQRA 452 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P R +R Q++A +A + ++ ++L +SFRSTA +L VD VF++ G++ D++ Sbjct: 453 DPAEFARMRRHFQEKAESAERLWAGVDLDISFRSTAAVLETVDAVFALDRARDGVASDAS 512 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 TIRHR+ R GQ G V+LW V + +W +S ++ LA IA T Sbjct: 513 PTIRHRAFRRGQAGLVELWPPVKPAEAVEAP----AWAPPVARESADSPSARLASVIAAT 568 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + I + R ++ D++VLVR+R T +T L R LK+ + V G DR +L Sbjct: 569 VHRWIDGGEMLEAKG-RPVRPGDVMVLVRRR--TAFVTELVRALKDR-GVPVAGVDRMVL 624 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 T+ LA+ DL+AL F+L +DDL+ +LK PL E+ +F++ R T++ + Sbjct: 625 TEQLAVMDLVALADFLLLPDDDLTLATVLKGPLVGLDEEALFRVAHGRR--GTLWRSLVA 682 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA------KKGRQQFISRFGNEVI 526 A F+ +Y+ +L+ F +P++ F +L + GR+ + R G + Sbjct: 683 LA-ESEPAFRPARRYLGDLLARTDFSAPYELFAGLLNRPCPADVRSGRRAILKRLGPDAQ 741 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D L+EFL L E+ SLQ ++ L IKR VRIMTVH +KGL++P Sbjct: 742 DPLEEFLAVCLAFEKTEPPSLQNFLAWLAASDAEIKRELEQGGGTVRIMTVHGSKGLQAP 801 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +VFL DT I +DD +P++ + + + ++ + +E Sbjct: 802 IVFLPDTLGSPTQSPPILWP------DDDCPVPLFAARRGQEDGLCAEARARANRRRDQE 855 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 Y RLLYV +TRA D+L IC H K+ + + + + V ++ Sbjct: 856 YRRLLYVALTRAEDRLYICGHQG----KREPSDDCWYRLVEEAMRETGVPHSFDFTGLSP 911 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID-TK 765 D W W ++ + R ++ + P + P + L PS D + Sbjct: 912 DGWAGEGWRLVGAQDVVVPRHVETEESAATEPPPPWIAEPAPGEPEPSRPLTPSRPDGEE 971 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 D Q F RGL++H+LLQ + L E R+ + + A ++ + Sbjct: 972 PAVRSPLGADDGQRFRRGLLVHRLLQTLPNLVEEAREAACRRFLARPAHKLTPEQQDAIA 1031 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 +L + S +EV + G + ++GRID+++++ ++I +YKT Sbjct: 1032 RETLAVLSHAEFAHLFGPGSRAEVPLVGVVTLGDGSRTLAGRIDRLALAGDTVWIVDYKT 1091 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 + P+++E +P + Q++ Y + L+ YP + + C+L++ P +P + L+ Sbjct: 1092 NRPPPRDLEDVPMVYRRQMAAYREALRAVYPGRRVRCVLLWTDGPYTMELPPSVLD 1147 >gi|163867331|ref|YP_001608525.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476] gi|161016972|emb|CAK00530.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476] Length = 1157 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 296/969 (30%), Positives = 486/969 (50%), Gaps = 51/969 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ F L+ +E+ + + + + + + G+ + + Q + + Sbjct: 218 LRALFNLAPDETNQCLMEQIQQTARLPLYALKH----CEINGSQSFKDMVEKFSQLEKAR 273 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +++S + K P+ N+ ++ ++ P +++ L+ Q++ + ++ K Sbjct: 274 DETNILNIISDIYFKTKGEPRSFSNLSRKKSDEIWPFIQQMLEDKQNKLSLLLEKHQCAK 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + +A+ L Y KK N LDF+DLI T LL+++ S W+ YK+D+ ++ Sbjct: 334 VATLNMAAFQLCAVYLKIYTNLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDRGLD 393 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDT+ QW++I+ L ++FF G + ++ RTLFAVGDEKQSIYSF GA P+ Sbjct: 394 HILLDEAQDTNPEQWQIIQLLAQEFFSGYSQRTNIRTLFAVGDEKQSIYSFQGAAPENFA 453 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 RI QK+A Q+F I+L SFRSTAD+L VD VF PEN +GLS ++T T+ H Sbjct: 454 ANGRIIQKKAQQTNQQFEKIQLHYSFRSTADVLKSVDLVFETPENYKGLSAENTKTV-HE 512 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R+ G V +W+ + + + W D L ++ LA +IA TI++ + Sbjct: 513 AIRVHSPGEVIIWDAISK----ETSEFPHDWHLSVDHL--DTPEVRLAEKIAETIADWLQ 566 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 I R+I+A DI++LVRKR I V G DR LT H++I Sbjct: 567 KGEILPAKG-RLIRASDIMILVRKRD---KFVSALSRALKHLNIPVAGADRLQLTKHISI 622 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L +DDLS C+LKSPLF FSE++++++ R T ++++ + A+ + Sbjct: 623 RDLMALGRFVLQPQDDLSLACVLKSPLFAFSEEELYQLAAHR--TGSLWQSLCTHASSQV 680 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 F+ + ++ + +F++ IL KGRQ+ +SR G+E DVLD F+++TL Sbjct: 681 -SFKDAFERLNHYRTLVDKIPVFEFYSHILNNDKGRQKILSRLGSEANDVLDAFMDYTLA 739 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ LQ + L P IKR N+ E+RIMTVH AKGLE+ +VFLVD GS ++ Sbjct: 740 IQKTGLPGLQAFLETLTASEPEIKREFEQNNEEIRIMTVHAAKGLEAAIVFLVDPGSAIW 799 Query: 599 SHKHIKKMHIMP---SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +H + +P + + IW P K + I HLK+ +EEY RLLYVGM Sbjct: 800 HPQHAPHLLKVPLNNAQGNGQQAFIWRPNEKFDTKLSKQAISHLKERAEEEYRRLLYVGM 859 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA D+L IC + K+ TW +V + K E IA Sbjct: 860 TRAEDRLFICGYKGQ----KTPSHTWLQLVKKALEPHAVAIK-------GPAEDIAAWRY 908 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK-------- 767 + + +E + + +P + + P L PS + Sbjct: 909 CITSSSASINQEVSCAESQALPPLPAFFSHKVSVEPVLPKPLKPSVASLSIEADTELSSS 968 Query: 768 ------TNLESLLSDNQTF--NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + + ++ N+ F G +IH+LLQ + P KR+++ +Y A W Sbjct: 969 PKQLFTSPVLGEINTNRAFFIEYGHLIHRLLQYLPDCPPQKRQDYARNYLNIKASHWDES 1028 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 + + L + ++L++ + S S +EV + G + K+ ISG+ID++ I++ +I Sbjct: 1029 QRERALRHVWKILDHVYLKPLFSEQSRAEVPLMGIVKIRGKEQAISGQIDRLYITKNSII 1088 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 ++KT P+ I H Q+++Y K+L+ +P+K + LLIY E K+F +P K Sbjct: 1089 FADFKTG-IPPENEAAIAPHHWLQMALYRKLLQAIHPDKDIQALLIYSKEAKIFKLPPEK 1147 Query: 940 LNKAFAEIS 948 L EI+ Sbjct: 1148 LEACLDEIA 1156 >gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91798584|gb|ABE60959.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter hamburgensis X14] Length = 1162 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 267/955 (27%), Positives = 442/955 (46%), Gaps = 28/955 (2%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 + + E E + +++ P +S+ ++ +ETGN + +++A+ L++A Sbjct: 227 DALDVDPAERVEDVEREIVDGPNLPISEWEALAAI-LETGNKSDIEQARRLREAHAMIGE 285 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 + FLT +K+ +T++I+ PD+ L + I + +R + Sbjct: 286 AAQADRYLDVFLTGDSVLRKSFVTKKISDVRPDIAAMLDRESQRVIALLERRRALTIRDR 345 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T + L +A + A+Y K++ +LD++DLI T +L + W+ YK+D+ ++H+LI Sbjct: 346 TQSLLVIATAVAANYRREKQERGLLDYDDLIDKTLAML-DQTSPGWVHYKLDRGVDHVLI 404 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DE QDTS QW+++ + DF G+ RT+FAVGDEKQSI+SF GA P+ + Sbjct: 405 DEAQDTSPKQWDIVERIIADFTTGEGAREGVRRTVFAVGDEKQSIFSFQGAAPREFDERR 464 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 +++ +A F + SFRS IL VD VF + + H S Sbjct: 465 SKLERKFRDAELPFRKEDFIYSFRSGKTILESVDYVFRDAAIYTSIHAVGAHPV-HESLA 523 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 G V LW + Q E W + FD++ SS LARRI + +I T Sbjct: 524 DAAPGVVDLWSL----EERDARQQIEGWRAPFDAVSATSSEVKLARRIRNEVKTLIAQGT 579 Query: 362 IFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + + G +R ++ DILVLVR+R + + + LK I V G DR LT+H+AI D Sbjct: 580 MTGHLGDRRPLRYGDILVLVRRRGNA--FDAIIQALK-QSGIPVAGADRLKLTEHIAIID 636 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 LM L +L DDL+ LKSPLF +DD+F I R + AN K Sbjct: 637 LMNLADALLLPRDDLALAVALKSPLFGLDDDDLFAIAHNRKGSLRDALADHATAN---DK 693 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540 F+ + + A SP F+ +LG GR++ + R G+E D LDEFL L E Sbjct: 694 FRDAFERLKMCETRAAHESPFAFYAWLLGGDGGRRRILRRLGHEANDALDEFLELALTYE 753 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + +S Q ++ L +KR + +EVR+MTVH AKGLE+ VVFL DT + Sbjct: 754 RKAPASQQGFMAWLRAADTDVKRDMEISRDEVRVMTVHGAKGLEASVVFLADTVTSPADT 813 Query: 601 KHIKKMHIMPS--LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + + + G+ +W + V + + T+ EY RLLYV MTRA Sbjct: 814 ERLNLIRMSRGNAPAHAAGVTVWAGRKAEDPPDVVNARAAMIAETEHEYRRLLYVAMTRA 873 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +D+LI+ N K + WYD++ D+ + K L + + T Sbjct: 874 ADRLIVGG-CKPGNRKDVREHAWYDLI------DKGLGKSGLAMREIETAAGTVKRFTRP 926 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NLESLLS 775 E P +P L S + L PS D ES Sbjct: 927 GETEPDAAGPATPVAAAPIALPPWLHSMAAPEAPAGPSLRPSDADDNAHHRIWPGESPDQ 986 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 + RG ++H+LLQ + +P +R + +Y +NA+ W E L + L+ + Sbjct: 987 RRRALLRGTLVHRLLQSLPDVPVDRRGDTALAYLGRNARDWSEAERDALAAQVLALIGDS 1046 Query: 836 MMTTAMSCDSYSEVSVSGKINCP-KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + S +EV+++G++ +++SG+ID++ ++++ + I ++KT+H P+ Sbjct: 1047 QFAPVFTDGSRAEVAIAGRLTTRRGDPVLVSGQIDRLVVTREAVLIVDFKTNHAPPRNPA 1106 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 P ++ QL++Y +L YP + L++ P++ I L+ I + Sbjct: 1107 DAPPAYVRQLALYRAVLARLYPELPVKAALLWTETPEMMEISALALDAGLEAIIS 1161 >gi|49473710|ref|YP_031752.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse] gi|49239213|emb|CAF25532.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse] Length = 1157 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 297/969 (30%), Positives = 492/969 (50%), Gaps = 50/969 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ F L+ +E+ + + + + + + GN + Q ++T Sbjct: 218 LRALFHLAPDETNQRLLEKIQQTARLPLYILTH----CKTHGNQHLKDMIAKFSQLAETC 273 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 ++S+ + P+ + + ++ P +++ +K+ Q + + +++ K Sbjct: 274 DETNIIKIISNIYFRMTGEPRNFSRLSCTKSDETWPFIQQMIKEKQSKLSVLLEKYQCLK 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + + L Y KK N LDF+DLI T LL+++ S W+ YK+D ++ Sbjct: 334 IATLNMVAFRLCTLYLKIYANLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDSGLD 393 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDT+ QW++I+ L ++FF G + ++ RTLFAVGDEKQSIYSF GA P+ Sbjct: 394 HILLDEAQDTNPEQWKIIQLLAQEFFTGHSQCTNIRTLFAVGDEKQSIYSFQGAAPENFA 453 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 RI QK+ QKF I+L SFRSTAD+L VD VF PEN +GLS ++T T+ H Sbjct: 454 ANGRIIQKKVQQVNQKFEKIQLNYSFRSTADVLKSVDLVFETPENYKGLSAENTKTV-HE 512 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R+ G V LW+ + + N + W D L ++ LA +IA T++N + Sbjct: 513 AIRVHSPGDVILWDAISK----ETNEFPDDWHVTVDHL--DTPEVRLAEKIAETVANWLH 566 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + + R+++A DI++LVRKR + L+R LK + I V G DR LT+H+++ Sbjct: 567 NEEMLPAKG-RLMRASDIMILVRKRDQ--FVLALSRALKL-HNIPVAGADRLQLTNHISV 622 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMAL RF+L +DDLS C+LKSPLF +ED+++++ R T ++++ + A Sbjct: 623 RDLMALARFVLQPQDDLSLACVLKSPLFALTEDELYQLAAHR--TGSLWQSLCMHALSH- 679 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 + F+ + ++ + +F++ IL KGRQ+ ++R G+E DVLD F+++TL Sbjct: 680 ASFKDAFENLNHYRTLVDKIPVFEFYSYILNIDKGRQKILARLGSEANDVLDAFMDYTLT 739 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ LQ + L + P IKR NH EVRIMTVH AKGLE+ VVFLVD G+ ++ Sbjct: 740 IQKTGLPGLQAFLETLSESEPEIKREFHQNHEEVRIMTVHAAKGLEAAVVFLVDPGTPIW 799 Query: 599 SHKHIKKMHIMPSLND---DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +H + +P N + IW P ++ + + LK+ +EEY RLLYVGM Sbjct: 800 HPQHASHLLKVPFFNTQLSEQQNFIWHPNAQFNTKLSEKALSRLKERAEEEYKRLLYVGM 859 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA D+L IC +S K++ RTW +V + K ++ A+ + Sbjct: 860 TRAEDRLFICGYSG----KRTFPRTWLQLVKKALTPHAIPIK------GPAEDIAAWRYC 909 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL-- 773 + P+ +E + + +P F + + P L PS + + E Sbjct: 910 ITPSSSIPINQEVSCAESQTFPPLPDFFFHKVPAEPALPKPLRPSVASLSIEADTEFAPN 969 Query: 774 --------------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + + G +IH LLQ + KR+++ Y A W Sbjct: 970 LKQFSISPVLGKTKTNRAFSIEYGNLIHLLLQYLPDCIPQKRRDYAQHYLNTKASHWNES 1029 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 + K+ L I ++L++ + S + +EVS+ G I K+ ISG++D++ I+Q I Sbjct: 1030 QKKDALRHIWQILDHSYLKPLFSEGARAEVSLMGIIKIRGKEQAISGQVDRLYITQNKII 1089 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 ++KT P+ I + Q+++Y K+L+ +P K++ LLIY E K+F +P K Sbjct: 1090 FADFKTG-IPPENEAAIAPRDLLQMALYRKLLQAIHPTKNVQALLIYTKEAKIFKLPSEK 1148 Query: 940 LNKAFAEIS 948 L+ EI+ Sbjct: 1149 LDALLDEIA 1157 >gi|163757508|ref|ZP_02164597.1| probable nuclease/helicase protein, ATP dependent [Hoeflea phototrophica DFL-43] gi|162285010|gb|EDQ35292.1| probable nuclease/helicase protein, ATP dependent [Hoeflea phototrophica DFL-43] Length = 1196 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 304/968 (31%), Positives = 470/968 (48%), Gaps = 27/968 (2%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQT 59 ++ GL+ +E I WP+ + + + L A Sbjct: 230 IRTALGLAEDEDETAIIAQAWPMEALPIDYVKDVFEFAGSAKSASKAYDFTYGLVAAHSQ 289 Query: 60 QCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 ER LL F T+ P K ++ ++ + ++ PDL ++ + +Q + + DR Sbjct: 290 TDPAERLDLLRQVFFTKSGPPSKLGSVASKSVAERFPDLADRAQAAQAQIAGVFDRLARL 349 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 K ++L + LA+ + K + +LD++DLI T LL+K SAW+ YK+DQ I Sbjct: 350 KALDASLIAYHLARRYIGGFAAMKSRQALLDYDDLIAATASLLEKSGASAWVHYKLDQGI 409 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +HIL+DE QDT+ +QW VI L+E+FF G+ + RTLFAVGDEKQSIYSF GA P+R Sbjct: 410 DHILVDEAQDTAPLQWSVIGKLSEEFFAGEGARQARRTLFAVGDEKQSIYSFQGARPERF 469 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 +E+R Q +A AG F + L +SFRS++++L +VD VF+ + +G+ D + H Sbjct: 470 AQERRSTQLKAEAAGVVFEHVPLRVSFRSSSEVLKLVDHVFASADAMRGM-GDPDEPVMH 528 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 ++R G +LW + Q + WT+ FD +P+ + ++ LARRIA + + I Sbjct: 529 ETARARAPGQAELWPMIAKQKSDDDD----DWTAAFDDVPEAAPSAQLARRIATVLRDWI 584 Query: 358 GTDTIFSNGKK--RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + I + R I D+LVLVRKR + L R LK I V G DR LTDH Sbjct: 585 DNEMIEDQKTRKLRPITPGDVLVLVRKRDG--FVPTLLRTLKAMTGIPVAGADRLRLTDH 642 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 +A++DLMALG F+L EDDLS ++KSPL ED +F++ R + +V+ ++ + A Sbjct: 643 IAVQDLMALGSFVLLDEDDLSLAALIKSPLLGLDEDALFRLAAGRPDGLSVWNHLLELA- 701 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535 F + +A PHDF+ +LG GRQ ++SR G+E DVLDEFL Sbjct: 702 KTEPLFASARNRLVRWRAMAHIQPPHDFYATVLGPDGGRQAYLSRLGHEAGDVLDEFLGL 761 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 TL +EQ LQ ++ LE P IKR A VRIMTVH AKGLE+P+VFLVD+G Sbjct: 762 TLDHEQAGLPGLQAFLAMLESDAPEIKREMEAGSGAVRIMTVHAAKGLEAPIVFLVDSGG 821 Query: 596 QVFSHKHIKKMHIMP----SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 + F H + ++P +D P +P+W+P N + L + K+ +EEY RLL Sbjct: 822 EAFQTSHQPNLWLIPQGPHQGSDGPSVPVWLPDKTYNNGATNPLRELAKEQAEEEYRRLL 881 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQ--------RTWYDMVYDSFHNDERVKKIKLTNS 703 YVG+TRA+D+L++C + K + + ER Sbjct: 882 YVGLTRAADRLVVCGYRGLKEAKSPTWHTLASAGFERAAEAGDYAVGEIEREADNTTFPV 941 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 + + P ER + P +L S Sbjct: 942 LRLQRAAPAPVAPGEPAADSKERTAAPAPIPSSPLPPPTRLPRPLAPSGVGAVLEDSANL 1001 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + RG +IH+LLQV+ ++P +R + Y + E Sbjct: 1002 ANRSPFADKPAGSGAALERGSMIHRLLQVLPSIPPEERDAALERYLERALPGADRSEAGL 1061 Query: 824 LLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882 + + +L++ + +EVSV G + ++ +SGRID+I++ + I + Sbjct: 1062 IAGQVRSVLDDARFAGVFAAQQGEAEVSVMGTLRIAGEERAVSGRIDRIAVLADRVLIVD 1121 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 YKT P E P++H++QL+IY +L YP++ + LIYVS P + IP+ L+ Sbjct: 1122 YKTG-LAPGSGEPPPHSHVSQLAIYRALLAPLYPDRKIEAALIYVSGPVLVPIPETALDA 1180 Query: 943 AFAEISTK 950 A + + Sbjct: 1181 AMMALEPR 1188 >gi|209965882|ref|YP_002298797.1| helicase, UvrD [Rhodospirillum centenum SW] gi|209959348|gb|ACI99984.1| helicase, UvrD [Rhodospirillum centenum SW] Length = 1171 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 251/957 (26%), Positives = 419/957 (43%), Gaps = 35/957 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-T 59 + + S + + F + + +G +A LQ Sbjct: 231 VHRFLRVERGASMDDVVARACRDGSFDEAGLRAACRALAGSGGKQDGARAIALQAWLDGP 290 Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 F FLT++ +K+++ ++ P E L++ + + + Sbjct: 291 AGRVAGFQEYGLLFLTREGEVRKSLLGRKAADADPAALEALQREAQRILDVTAEMKCVGV 350 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEIN 178 ++T A LTLA+ + Y K+ +LDF+DLI+ + LL AW+ YK+D ++ Sbjct: 351 AQATAALLTLAEAMLETYARLKRARALLDFDDLILTASRLLAGEGRACAWVLYKLDGGLD 410 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDT+ QW+V++++ E+FF G+ RTLF VGD+KQSI+SF A+P Sbjct: 411 HILVDEAQDTNPEQWDVVKAIAEEFFAGQGAADDRRRTLFVVGDDKQSIFSFQRADPAEF 470 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 R +R R A ++ + L SFRS +L VD VF +P+ G++ED T + H Sbjct: 471 ARMRRHFADRVAAAQARWEPVNLQTSFRSVGAVLRCVDAVFRLPQARDGVAEDGTE-VCH 529 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 R R G G V+LW + + P WT + E+ + LA +A I++ + Sbjct: 530 RPFRRGMAGRVELWPVLAPEEAGDPAP----WTPPTEMERVEAPLARLATLVADQIAHWL 585 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + + R ++ DI+VLVR+R + L R LK+ + V G DR +LT+ LA Sbjct: 586 RSGERLE-ARDRPVRPGDIMVLVRRRN--RFVQHLVRALKDR-DVPVAGVDRMVLTEQLA 641 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 ++DLMALGRF+L EDDL+ C+LK PL +E+ +F + R A+ Sbjct: 642 VQDLMALGRFLLLPEDDLTLACVLKGPLIGLTEEALFDLAWDRPGHLWPALARAAEADPD 701 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK------KGRQQFISRFGNEVIDVLDE 531 F + ++ L+ F +P + F +L GR+ ++R G E +D +DE Sbjct: 702 GGPFLRAVGWLRGLLAETDFRAPFELFAGVLSRPCPADPVSGRRALLARLGAEAVDPVDE 761 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN----EVRIMTVHTAKGLESPV 587 F+ L E+ SL+ + LE IKR A VRIMTVH +KGL++PV Sbjct: 762 FVAAALSFEREHVPSLETFLHWLEAGRAEIKRELDAGGGPAGGRVRIMTVHGSKGLQAPV 821 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V L DT S + P D +P++ P+ + + +EY Sbjct: 822 VILPDTMSVPEQSPR----ILWPDGTDGREVPLFAPRRALEDPACQSARRAADHRRDQEY 877 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RLLYV +TRA D+LI+C + + WY +V + + T Sbjct: 878 RRLLYVALTRAEDRLIVCGW--EAGRRTGGDGCWYRLVEQALKAVAEEQDYDFTVVSPAG 935 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 P + +P+ + + L PS + + Sbjct: 936 WQGPGLLLREAQSAPPKPDSLEAGEEPAGVTLPEWARAGAPAEPAPSRPLTPSRPEGV-E 994 Query: 768 TNLESLLSDNQTFN--RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + S L RG ++H LLQV+ LP R ++ + ++ + Sbjct: 995 PPVRSPLGAEDGLRFKRGSLVHTLLQVLPDLPAETRGPAAAAWLARPLHGLTPEQQAEIA 1054 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 R+LE+P S +EV + G + +SG+ID++ ++ ++I ++KT Sbjct: 1055 AETLRVLEDPDFAPLFGPGSRAEVPIVGLV----GGRALSGQIDRLLVTDTAVWIVDFKT 1110 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 + P +P ++AQ++ Y + L+ YP + CLL++ P + L++ Sbjct: 1111 NRPPPTVEADVPPVYLAQMAAYREALRRIYPGLPVRCLLLWTDGPFTMELSPAALDR 1167 >gi|209883635|ref|YP_002287492.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans OM5] gi|209871831|gb|ACI91627.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans OM5] Length = 1161 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 249/956 (26%), Positives = 437/956 (45%), Gaps = 30/956 (3%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 G++++ + + +++ P+ S + + + E G T + +A+ Sbjct: 228 RALGVAMDAQCDAVEREMVEGPHLPRSRWIEAAN-AFEDGGKTDATQGAR-LRAAAALTG 285 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 E + F T + + +K+++T+ + L L + Q + DR Sbjct: 286 EAQLEAYLGVFFTGEGSERKSLMTKSLTAMHGALAAALSQEQPRLRALADRRRAIIQRDR 345 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T A L +A + AHY K+ +LD++DLI T+ +L ++W+ +K+D+ I+H+LI Sbjct: 346 THALLVIASAVAAHYRREKQARGLLDYDDLIDKTHAMLTG-GYASWVHFKLDRGIDHVLI 404 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DE QDTS QW++I S +F G RT+FAVGDEKQSI+SF GA P+ + Sbjct: 405 DEAQDTSPRQWDIIESFVSEFTAGAGARGEIHRTVFAVGDEKQSIFSFQGAAPREFDLRR 464 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 R R +A F + SFRS A IL VD VF + + D + H + Sbjct: 465 RAMATRHAHANLSFESVSFKHSFRSGAAILDSVDYVFREQTIYRSIHIDDAYPV-HDALP 523 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 TV+LW + + E W + FD++ S LARR+ I +I T Sbjct: 524 DAAPATVELWPV----EEPDTREEIEGWQAPFDTVSPASPEVKLARRVESEIKALIAAGT 579 Query: 362 IFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G++R ++ D+++LVR+R + + LK I V G DR LT H+A+ D Sbjct: 580 MTGPLGRRRRLRYGDVMILVRRR--GAAFDAVIQALK-HAGIPVAGADRLKLTAHIAVID 636 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 LM L +L +DDL+ LKSPLF ++DD+ I T ++ E + A + Sbjct: 637 LMHLADALLLPQDDLALAVALKSPLFGLTDDDLLTI--APTRTGSLREALAAHA-ASSER 693 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG----RQQFISRFGNEVIDVLDEFLNFT 536 + +++ A +P FF +LG G R + + R G+E D LDEFL Sbjct: 694 LRIASEFLETCAMRAARMTPFAFFAWLLGGDSGGHGGRARILKRLGHEANDALDEFLELA 753 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 L E+ + +SLQ I+ L +KR +EVR+MTVH AKGLE+ VVFLVDT + Sbjct: 754 LTYERKAPASLQGFIAWLRAADTDVKRDMEILRDEVRVMTVHGAKGLEASVVFLVDTTTS 813 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + ++ +H+ + +W V+ ++ ++EY RLLYV MT Sbjct: 814 PSDTQRLRLIHMPHGNAGPGEVVLWAGAKDDDTEDVARARDTMRGEIEDEYRRLLYVAMT 873 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA+++LI+ N + +WYD++ V + A ++ Sbjct: 874 RAAERLIVGG-CKPGNRNNVRELSWYDLIEKGLAASPLV-----LTEVETPFGPAKRYAR 927 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775 + R++ + + +P L++ + L PS+ L + + Sbjct: 928 KDEAALDIARDDAASAPAELKSLPDWLYADAPQVRAKEITLAPSSAGGDTAAPLSAEQTI 987 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 + G +H+LLQ + L + R+ + ++ + +E L+ + L+++P Sbjct: 988 LQRARLTGQWVHRLLQSLPDLAQEAREAAALRFLARHVQDASEEERTTLIRQVLALIDDP 1047 Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 S +EVS++G++ + +SG+ID++ ++ + I +YKT Sbjct: 1048 RFAALFGPGSRAEVSIAGRLTLNGTSVRVSGQIDRLVMTPDEVMIVDYKTGAVPQG---A 1104 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951 +P ++ QL++Y +L P + + C L++ P++ +P + L+ A ++ + Sbjct: 1105 MPPHYVRQLALYRAVLAKLSPGRPVRCALLWTQGPQIVEVPPSTLDAELASLARRA 1160 >gi|126732963|ref|ZP_01748724.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula stellata E-37] gi|126706580|gb|EBA05656.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula stellata E-37] Length = 1123 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 254/961 (26%), Positives = 395/961 (41%), Gaps = 54/961 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 ++ +GL ++ + + ++ +D+ + + G T LQ Sbjct: 206 IRAAYGLKPDDGEDSLLASVFLGNE---TDLAAALVPHFKAGGKTEQGLVPLLQSIRGRD 262 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 L LTQ T +KN T+ K +P+L E + + Sbjct: 263 T--RTLGTLKQICLTQAGTIRKNFPTKATRKNAPELCEAYDQLAARVEGALETEKALIAA 320 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 +A A YEEAK + LDF+DLI DLL V+ W+ Y++D I+HI Sbjct: 321 DRDIALTAFAARFVPAYEEAKMRRGWLDFDDLITRARDLLSDERVADWVLYRLDGGIDHI 380 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDTS +QW+VI L +F G+ + RT+F VGD+KQSIYSF GA+P R Sbjct: 381 LVDEAQDTSPVQWDVIERLAREFTSGEGARETRRTIFVVGDKKQSIYSFQGADPSEFDRM 440 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + ++R N + + L SFRS IL VVDK F + + + +HR+ Sbjct: 441 REHFRERLMNTDAPLNAMVLEYSFRSADPILRVVDKTFEGADASGF-----SADQKHRAF 495 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + G G V LW V D + P W D ILA+RIA I I Sbjct: 496 KSGMPGRVDLWPVVDKTRDDEDGP----WHQPLDRKGARHHTVILAQRIARFIRRTIDAG 551 Query: 361 TIFSNG-------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 T R + A D L+LVR+R L + R K + + + G DR + Sbjct: 552 TPLPEENGHSGTYHARPVHAGDFLILVRRRSQ--LFKEIIRACKQE-DLPIAGADRLKVM 608 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473 LA++D++AL F+ + ED LS L+SPLF SE D+F + +R Sbjct: 609 AELAVRDIIALLSFLETPEDSLSLATALRSPLFGLSEQDLFTLAHRRTTK------YLWP 662 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533 V+ +++L F P+D IL KGR+ I R G E D ++ L Sbjct: 663 TLRDSEAHPAVLAVLNDLRGQTDFLRPYDLIERILTRHKGRRLLIGRLGQEAEDGINALL 722 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 L EQ + +L + + IKRA + +R+MTVH AKGLE+P+V L D Sbjct: 723 QQALAYEQTAVPTLTGFLQWAQSDDLQIKRAPDSAGETLRVMTVHGAKGLEAPIVILPDC 782 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 I L DP IW S ++ ++ K +E +RLLYV Sbjct: 783 A--------APDASIKAELLSDPDGVIWKQTSDAQPPRQQAAVEAAKVKEAQERDRLLYV 834 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 +TRA LI+ + +++ WYD V + + E + Sbjct: 835 ALTRAEKWLIVAAAGDGTDK----PEAWYDKVRLGMIGSGAMPSAFEFGDLGSGEGL--- 887 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 T + + LE + ++P L PI P +PS + Sbjct: 888 --TLGTDWSGLEMRDPHPLTRQTVEMPAHLLRPISPPEELPKTRSPSDLGGAKALGGAEG 945 Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL----WPAKEYKNLLLSIT 829 ++ RG +H L+V+ LPE R++ S + A ++ +L Sbjct: 946 DTEEVATARGTALHGFLEVLAPLPEKDRRHAGDSLLQQYASDTETVLIHEQLPQILDEAL 1005 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 R+LEN DS +EV ++ + I G ID++ + + +YKT+ Sbjct: 1006 RVLENADFADFFGPDSLAEVPITADLGPLG---RIHGIIDRLLVGHSRVVAIDYKTNRTT 1062 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 P E P + Q+++Y L YP++ + L++ + IP + +A A + Sbjct: 1063 PATPEETPDGLLRQVAVYHAALAQLYPDREIETGLLWTATNHYMPIPHELVTQALARATA 1122 Query: 950 K 950 Sbjct: 1123 S 1123 >gi|260431946|ref|ZP_05785917.1| double-strand break repair helicase AddA [Silicibacter lacuscaerulensis ITI-1157] gi|260415774|gb|EEX09033.1| double-strand break repair helicase AddA [Silicibacter lacuscaerulensis ITI-1157] Length = 1119 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 234/963 (24%), Positives = 403/963 (41%), Gaps = 68/963 (7%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L RFGL + + ++ ++ + + ++ G T K A+ L T+ Sbjct: 208 LLARFGLPEGFDEDALLAQVFLGGEV---ELIRSILPALAGGGKTDAKAAEKLSGF--TE 262 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDL-KEKLKKSQDEFIKIRDR 113 + +L FLT K + + T+ + + + L+ R+ Sbjct: 263 PALGQLPVLEDVFLTGKSAKEPFTAKIGSFPTKALREGVLAGQMDPLEALMRRVEAAREG 322 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + ++ A YE K+ LDF+DLI+ LL V+AW+ Y++ Sbjct: 323 RLALAAARKSMVLHRFAAVFLPEYERRKQLRGWLDFDDLILRARLLLNDPAVAAWVLYRL 382 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGA 232 D I+HIL+DE QDTS QW+V+ L ++F G+ S RT+F VGD+KQSIYSF GA Sbjct: 383 DGGIDHILVDEAQDTSPDQWDVVEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGA 442 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P+ R + ++ +G K L SFRS++ IL++VD +F +A Sbjct: 443 DPQAFDRMQAEFGRKLQESGSKLWDWTLEYSFRSSSAILSLVDILFENRADAGF-----Q 497 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 +H + + G V LW V D+ + WT D + ILA +IA Sbjct: 498 KESQHLAFKADLPGRVDLWPVVEKVEDTD----EGDWTDPVDRPAAQHHTVILANQIAAR 553 Query: 353 ISNMIGTDTIFSNGKK-------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 I MI R ++ D L+LV++R D L + R K + + Sbjct: 554 IKAMIDAGETIPEDGPTRGTFVRRKVRPGDFLILVQRRSD--LFAEIIRACKAQ-GLPIA 610 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 G DR + LA+KDL AL F+ + EDDLS +LKSPLF +SE +F + +R E Sbjct: 611 GADRLKVGAELAVKDLAALLSFLATPEDDLSLATVLKSPLFGWSEQMLFDLAHRRQER-Y 669 Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525 ++ +++ A F + +++L F P+D +L GR++ + R G E Sbjct: 670 LWAALRQRAGD----FPETLAVLNDLRGQVDFLRPYDLIERVLTRHDGRRKLLGRLGAEA 725 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 D ++ L+ L E++ SL + ++ IKR + + +R+MTVH +KGLE+ Sbjct: 726 EDGINALLSQALAYERSDIPSLTGFLVWMQTDDLEIKRQMTGVGDMIRVMTVHGSKGLEA 785 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P+V L DTG + + G P+W + +V+ + ++ + Sbjct: 786 PIVILPDTGKRQPPRD--------AEIMVADGTPLWKVPADLSPELVARAREDARQREEN 837 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RLLYV +TRA LI+ + + +WY +V ++ + Sbjct: 838 ERLRLLYVALTRAEKWLIVAAAGDLGKDG----SSWYQLVEEAMGRAGATEIPGTGIRRL 893 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 H P P++ +P P I + L+PS + Sbjct: 894 AHGDWEGLPLDHRPTPDPVQ-----------DSLPDLFHRPAPEPIPDAETLSPSDLGGA 942 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 E+ L + RG +H LL+ + P + + ++LL Sbjct: 943 KALPGETGLEEEAAKLRGTRLHLLLEHLAQAPRDRWDQLCARLL----PDMQDGDRRDLL 998 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 +L P + + D+ +EV VS + I G ID++ ++ + + ++K+ Sbjct: 999 AEAAGVLTAPDLAPVFAPDALAEVPVSATV----DGRRIHGVIDRLIVTDDVVQVIDFKS 1054 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + VP E P + Q+ Y L YP + + +++ ++ +P + + +A Sbjct: 1055 NATVPDRAETCPEGLLRQMGAYVAALSQIYPGREIRTAILWTRTARLMWLPHDLVTQALG 1114 Query: 946 EIS 948 Sbjct: 1115 RAQ 1117 >gi|144899270|emb|CAM76134.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 1146 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 267/949 (28%), Positives = 450/949 (47%), Gaps = 28/949 (2%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT-Q 60 + R GL ++ E I + + + V + + G T +K L + Sbjct: 221 RTRLGLESGDTAETILAAACTDEACNAATLRQAVPILLN-GAKTDQEKGTRLAAWLAAPE 279 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + F+ LT K + ++T + P L+ L+ + I++ R ++ Sbjct: 280 TRAQAFAEYCLSVLTAKGEMRAKLVTNGLRDAHPWLEPALQAEAERLIRVNARLKAAQVA 339 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A L L A YE+ K+ ++D++DLI+ DL+ + V+ W+ +K+D I+H+ Sbjct: 340 QCTAALTRLGHALLAAYEKRKQGRALMDYDDLILAARDLMARPGVAPWVLFKLDGGIDHV 399 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 LIDE QDT+ QW V+ +LT +FF G S RT+FAVGD KQSIYSF A+P+ Sbjct: 400 LIDEAQDTNPDQWAVVAALTGEFFAGLGARESLRTVFAVGDIKQSIYSFQRADPQAFDDM 459 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 +++ A +++ + L LSFRST +L VD VF+ + D RH + Sbjct: 460 RKLFAHHVPLAKREWREVPLNLSFRSTRAVLDAVDAVFAGDGPGRDGVTDDDPDPRHLAF 519 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 R GQ G V+LW V+ + + +W + L +S + LAR +A I+ MIG + Sbjct: 520 RQGQAGLVELWPPVIP----RPADEIPAWKPPIERLRGDSPRTRLARLMAARIAAMIGAE 575 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + + R I+A D+LVL+R+R + L R LK D KI V G DR +LT+ +A+ D Sbjct: 576 IL--ESQNRPIRAGDVLVLLRRRGG--FVEDLVRELK-DLKIPVAGADRMVLTEQMAVMD 630 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 LMALG F+L EDDL+ +LK PL SED++F++ R E ++++ +++ A + Sbjct: 631 LMALGNFLLLPEDDLTLATVLKGPLVGLSEDELFRLAWNRGE-ASLWDTLKRKAGS-EAA 688 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540 F Y+ L+ +A +P F +LG G++ ++R G E D LDEF+ T+ E Sbjct: 689 FARAEDYLSPLLALADRLAPFALFAHVLGKLGGKRALLARLGPEAEDPLDEFMALTMAFE 748 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + SLQ + LE IKR + VRIMTVH +KGL++P+VF+ DT Sbjct: 749 RGHPPSLQGFLRWLESGGTEIKRDLEQGGRDAVRIMTVHGSKGLQAPIVFMPDTLQMPIQ 808 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 ++ + + I +W P+++ ++I K + + EY RLLYV MTRA Sbjct: 809 GPR-----LLWNGGPEDEILLWPPRAEMADDICEAARAAQKLAREREYRRLLYVAMTRAE 863 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 D+L +C + + Q WY+++ S + + + + T Sbjct: 864 DRLYVCGWETL---RAAPQGCWYNLIRTSLEPLAARMEDPFLAAAGETDDATVLRLTCRQ 920 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 E+ +E + + +P + P L PS + + L SD Sbjct: 921 EH-AVEAQTFAEAEALLPALPAWARLTAPPEPAPPRPLAPSQPEGEEPPARSPLSSDGAG 979 Query: 780 F-NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 RG ++HKLLQ++ LP +R + L + + ++ +L++ Sbjct: 980 RFKRGKLVHKLLQILPDLPRDRRAQAAIRFLKGTGGLDTSAALA-IANEVSDILDHAGFA 1038 Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 + S +EV + G I + +SG++D++ ++ + + +YKT+ P E IP Sbjct: 1039 PLFAPGSKAEVPIVGLI---GESRALSGQVDRLVVTATEVLVADYKTNRRPPAVSEAIPD 1095 Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 ++ Q++ Y L YP+ + C L++ P + I L+ A + Sbjct: 1096 LYVRQMAAYRLALACIYPHHRIRCALVWTDGPALREIEPAALDDALDSM 1144 >gi|319898220|ref|YP_004158313.1| ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73] gi|319402184|emb|CBI75715.1| putative ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73] Length = 1152 Score = 578 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 302/965 (31%), Positives = 486/965 (50%), Gaps = 48/965 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ F L+ NE+ + + + I Y + S P + Q + Sbjct: 218 LRTFFNLAPNETNQKLLDKIQQTATLPSYAIKHYQTYS----TPKNKDIIEKFLQLATAS 273 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +L+S+ + + P+ + +++ ++ P ++++++ Q++ + +++ K Sbjct: 274 DETNIINLVSNIYFVKAGKPRDFSRLFSKKSDEIWPFIEKEIEDKQNQLSILLEKYQCLK 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + +A+ L Y + KK N VLDF+DLI T LL+ + S W++YK+D+ I+ Sbjct: 334 LITLNIAAFQLCYIYLKIYADLKKVNNVLDFDDLIERTLHLLQHKGASQWVQYKLDRGID 393 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDT+ QW++I+ L ++FF G + ++ RT+FAVGDEKQSIYSF GA P+ Sbjct: 394 HILLDEAQDTNPKQWQIIQLLAQEFFAGHSQRTNIRTVFAVGDEKQSIYSFQGAVPENFA 453 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 R+ QK+ QKF I+L SFRSTADIL VD VF PEN +GLS + T+ H Sbjct: 454 ENGRMIQKKVQQVEQKFEKIQLNYSFRSTADILKSVDLVFETPENYKGLSAEHVKTV-HE 512 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 R+ G V +W+ + + N + W S D L ++ LA +IA TI+N + Sbjct: 513 PIRVHSPGDVIIWDTIS----QKTNELPDDWLSTVDHL--DTPQIRLAEKIAETIANWLK 566 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + K R+++A DI+VLVRKR ++ L+R LK + + V G DR LT H+++ Sbjct: 567 NGEMLPAKK-RLLRASDIMVLVRKRDQ--FVSALSRALKLRH-VPVAGADRLQLTAHISV 622 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 DLMAL RF+L +DDLS C+LKSPLF+ SE++++++ QR +++E + + Sbjct: 623 LDLMALARFVLQPQDDLSLACVLKSPLFSLSENELYQLAAQRK--GSLWESLCTHTSSH- 679 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 + F+ + ++ + +F++ IL KGRQ+ ++R G E +VLD F++ TL Sbjct: 680 ASFKTIFDRLNTYRALVDKMPVFEFYSYILNNDKGRQKILARLGTEANEVLDAFMDHTLT 739 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ LQ + L P IKR N EVRIMTVH AKGLE VVFLVD GS ++ Sbjct: 740 IQKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAVVFLVDPGSAIW 799 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 K+ D IW P ++ ++ LK+ +EEY RLLYVGMTRA Sbjct: 800 HPKYAPHFLKF--FLGDKQTFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYVGMTRA 857 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 D+LIIC +SN K TW +V + K ++ A+ + Sbjct: 858 EDRLIICGYSNQ----KETPNTWLQLVKKALKPHAVSIK------GPAEDIAAWRYCITS 907 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL----- 773 +TP+ +E +P + + L PS Sbjct: 908 SCSTPMYQEIPCDAHHVFPPLPAFFHDKMPTESTLSKPLRPSVAGIIDAKTEFFPNKKHF 967 Query: 774 ----------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + G IHKLLQ + KR+++ Y A W + +N Sbjct: 968 SLSPVLEEKNTKRTFSIEYGNFIHKLLQHLPNYTPTKRQDYAQFYLNTKASHWHKTQREN 1027 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 L I ++L+NP + S S++EV++ G + K+ IISG+ID++ I+ ++F ++ Sbjct: 1028 ALHHIWKILDNPKLKPLFSRFSHAEVALMGIVKINGKEQIISGQIDRLCITDNSVFFADF 1087 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT P+ I H+ Q+++Y+K+L+ YPNK++ LLIY+ + K+F + KL+ Sbjct: 1088 KTG-LPPENDTDIAQRHLLQMALYQKLLQAIYPNKNMQALLIYIKKAKIFKLLPEKLDAL 1146 Query: 944 FAEIS 948 E+ Sbjct: 1147 LDEMI 1151 >gi|83594763|ref|YP_428515.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170] gi|83577677|gb|ABC24228.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170] Length = 1187 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 264/957 (27%), Positives = 445/957 (46%), Gaps = 34/957 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 +++ GL+ +++ E + D F + + ++ G T ++ + Sbjct: 245 IRDSLGLAADDTPETVLADGCAEGAFDGPSLRAA-AAALIAGGKTDQERGLRIAAFVSET 303 Query: 61 CIEER---FSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 R F FLT+ P K + T+ + K P E L+ Q +R+R Sbjct: 304 DPAIREGLFWTYIGAFLTKTDEKPVKTLCTKPVEKAHPGTLESLEAEQQRIWTLRERLRA 363 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 +++ A LTL + Y+ K+ +D+EDLI+ LL +AW+ +K+D Sbjct: 364 ATTAQASEALLTLVGAMLKDYQRRKRALGRMDYEDLILAARRLLAGDGAAAWVLFKLDGG 423 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFF--VGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++H+L+DE QDTS QW + +L +FF + + PRT+FAVGD KQSIY F GA+P Sbjct: 424 LDHLLVDEAQDTSPDQWAIASALAGEFFTDSARWDGTRPRTVFAVGDRKQSIYGFQGADP 483 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS--- 291 K +R ++ G F+ + L +SFRST +L V+ VF+ G+++D Sbjct: 484 KAFEDMRRHFHDAVSDIGGHFAEVPLNISFRSTRAVLEAVNAVFARQPARDGVAQDDADS 543 Query: 292 --TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 I H + R G V+LW + +P W + + ES+ + LA+R+ Sbjct: 544 GVAEDITHHAFRKDAGGLVELWPAMEPAPRVVGDP----WKPPVERIGLESARARLAKRV 599 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A I M + + + R I+ DILVLVR+R K+ V G DR Sbjct: 600 AQRIKTMTSGGELLES-QGRPIRPGDILVLVRRRGG---FEEELVSALKSAKVEVAGVDR 655 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 LTD LA+ DL+ALG+ +L EDDL+ +LK PL ED +F + R E +++ Sbjct: 656 MTLTDQLAVMDLIALGKALLLPEDDLTLASVLKGPLIGLDEDALFTLARDRGRDERLWDR 715 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG-AKKGRQQFISRFGNEVIDV 528 ++ A + + ++ I L A +PH+F+ +L GR+ + R G E D Sbjct: 716 LRPHAGA-ENAYGKAMEIIEPLRDRAGRLAPHEFYAHVLDGPLNGRRLLLGRLGPEAEDP 774 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPV 587 +DEFL TL +E+ +LQ +S LE+ IKR + VRIMTVH +KGL++PV Sbjct: 775 IDEFLALTLAHERVGPPALQGFLSWLEKGTVEIKRDLDQGALDAVRIMTVHGSKGLQAPV 834 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VFL DT ++ + + +P W P R + +I LK EY Sbjct: 835 VFLPDTLAKPTGND---LLLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREY 891 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RLLYV MTRA+D+L IC K+ + WY +++D+ + ++ L ++ Sbjct: 892 RRLLYVAMTRAADRLYICGWETL---KRPAEDCWYALIHDALAASAQTVEVPLLDATGAL 948 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 + T E +P + + + P + L PS + +G Sbjct: 949 KDTEVLRLTCPQEGSPSPSDSAAPADEEGEAPAAWAALPPPLEPTPSRPLAPSHVGDEGA 1008 Query: 768 TNLE-SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 D + F RG +IHKLLQ++ LP+ R + ++ A A+E L Sbjct: 1009 ARSPLDGRGDPRRFLRGRLIHKLLQLLPELPDEDRGPAARRWLSRPAWALEAEEIGALSA 1068 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + +L++P + S +EV + G + + ++SG++D+++++ + I +YKT+ Sbjct: 1069 EVLAVLDDPAFRAVFAPGSRAEVPLVGLV----GNHVVSGQVDRLAVTDDEVLIVDYKTN 1124 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 P+ ++ + +I Q++ Y +L +P++ C+L++ P IP +L + Sbjct: 1125 RPPPRAVDLVDIAYIRQMAAYRALLAQVFPSRVARCVLLWTDGPFAMEIPAERLAEE 1181 >gi|254470933|ref|ZP_05084336.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062] gi|211960075|gb|EEA95272.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062] Length = 1156 Score = 576 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 288/953 (30%), Positives = 452/953 (47%), Gaps = 36/953 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L F + + L ++ + ++ G+ T +A L QA + Sbjct: 222 LYADFSVMPEDDISDFASALRRKCSLTDDEVKAFAE-ALRVGSKTDQDRANALDQAITLK 280 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 E FLT P+K++ T+++ P++ E+L Q ++ N Sbjct: 281 SDEAWRIAWLKIFLTGTLGPRKSLATKKVQTAFPEVVERLFAEQLRVLEALQHQNAVITV 340 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 T A L L+ + +YE K + LDFEDL++ + LL + + + W++YK+DQ ++HI Sbjct: 341 SGTKAILILSDAVLRYYETEKLRRGYLDFEDLVVKSAQLLSRAEAAQWVQYKLDQGLDHI 400 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDTS QWEVIR+L E+FF G RT+FAVGDEKQSIYSF GA P Sbjct: 401 LVDEAQDTSPRQWEVIRALAEEFFAGDGAREKVRTIFAVGDEKQSIYSFQGAVPAYFAEM 460 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ +RA A + F IEL LSFRST D+L VDKVF PE +GLS+D+ + H + Sbjct: 461 RKFFARRAEEAQKNFEGIELNLSFRSTPDVLGAVDKVFDTPETYKGLSQDNVAPV-HEAI 519 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 R G V++W ++ + + WT D++ + LA RIA I + Sbjct: 520 RHNDPGRVEIWPL----EEAVETLEPDDWTQPIDAIGTGNPMLRLATRIAEQIKDW---- 571 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 ++ + D+LVLVRKR + G+DR +LTDH+A+KD Sbjct: 572 -----DERNIAGPGDVLVLVRKRG---PFVEALNRELKRLDVPAAGSDRLVLTDHIAVKD 623 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--CGI 478 L+ALGRFIL EDDLS C+LKSPLF +DD+F+I + + Sbjct: 624 LVALGRFILLPEDDLSLACVLKSPLFGLLDDDLFEIAHETPGVPRPGTLWHELLRKSENS 683 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 K+Q V K + A F P +F+ I+G RQ+F R G EV DVLDEFL+ TL Sbjct: 684 EKWQTVRKQLEVWRDRADFVPPFEFYAKIMGTDGYRQKFRERLGTEVDDVLDEFLSLTLT 743 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E++ ++ ++ L + P IKR +A VRIMTVH +KGLE+P V L D + Sbjct: 744 YEKSGTPGMEGFLAWLAEAPTEIKRELNAAKGMVRIMTVHGSKGLEAPYVILADGCNAPV 803 Query: 599 SHKHIKKMHIMPSLNDDPGIP--IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 S H M D P +W+P R + ++ L +EEY RLLYV +T Sbjct: 804 SSLHAPVMVEKQRAGDTEAAPALVWLPNKAQRTAWHEEALELLADEQKEEYRRLLYVALT 863 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA D+L++C S K+ + + + +E ++ ++ W Sbjct: 864 RAKDRLVVCGWSP----KRGPHDECWYTLTRNGLIEEAREQTDANGEVSAWIWTKGGIEK 919 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776 P E+ E+ +Q I K + +P + ++ K + Sbjct: 920 PEPVLPQSEKAESQQQAAMPDWISKNVSAP-ERIRRLKPSAAFEEMEAKESIEQQDPKDA 978 Query: 777 NQTFN--------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 + RG I+H+LL+ + LPE +R + + + + LL + Sbjct: 979 LEAARQPEDWPLVRGRIVHRLLEFLPDLPEDQRIVSTERFLASSLPERFEDKRERLLDDV 1038 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIFIFEYKTHH 887 L P S + +EV + G + + I G ID++ ++ + + I ++KT+ Sbjct: 1039 LGTLGAPEFAELFSANGRAEVPIQGMLTGEDGKPVEIFGLIDRLLVNDEEVIILDFKTNA 1098 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 +VP+ ++ + T++AQL++Y K+L + YP+K + LL+Y S P++ IP + Sbjct: 1099 YVPRSVQDVSETYVAQLAVYRKLLSELYPDKRIRALLLYTSGPRLIEIPVELM 1151 >gi|254439061|ref|ZP_05052555.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 307] gi|198254507|gb|EDY78821.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 307] Length = 1128 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 240/964 (24%), Positives = 420/964 (43%), Gaps = 58/964 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-SQT 59 L F + N + + + D P+ ++ I + + + + +G K A LQ T Sbjct: 207 LAQTFDIPKNLTLDGLI-DAIAGPH-DLAAIQQLIPICLTSG-ANDQKAAIKLQAINCNT 263 Query: 60 QCIEERFSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 +++ FL K + T+ + +PDL ++L RD Sbjct: 264 GPDMTDLAVMEDVFLFGKDAKSPYGAKIDSFPTKAVRAANPDLIDELNDLMQRVEDGRDA 323 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + + T A + A YE K ++ LDF+DLI LL+ V+ W+ +++ Sbjct: 324 RWCWLALEKTRALIAFATPFVQRYETKKVQSAALDFDDLISKAKALLEDPAVAQWVLFRL 383 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGA 232 D ++H+L+DE QDT+ QW+++R LT++F G + RT+F VGD+KQSIYSF GA Sbjct: 384 DGGVDHVLVDEAQDTAPDQWDIVRLLTQEFSTGIGANPDRERTVFVVGDKKQSIYSFQGA 443 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P R + +EL SFRS+A +L +VD+ F ++E Sbjct: 444 DPDGFDRMSVHFSSELAKVEKPLHRLELLYSFRSSAAVLQLVDQTFK-----GEMAEGLG 498 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 I HR+ + G G V +W + P++ W D + + +LA +IA Sbjct: 499 DHIEHRAFKDGMPGRVDVWPVIEPSEK----PEERDWDDPVDLKGRTNHKVVLAAQIAAE 554 Query: 353 ISNMIGTDTIFSNG------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I MIG +T+ +R I D L+LV++R D L + + K + + G Sbjct: 555 IKRMIGQETLPVKEVDDTEWSRRKITPGDFLILVQRRSD--LFSEIIAACKT-AGLDIAG 611 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR L LA+KD+ AL +F+ Q+DDLS LKSPLF ++E ++ + R + +T+ Sbjct: 612 ADRLKLGGELAVKDISALLQFLALQDDDLSLAAALKSPLFGWTEKQLYDLAQPRKKRQTL 671 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 +E ++ + + +H+L + A F P+D +L GRQ I+R G+E Sbjct: 672 WEALRTSGTH-----EDTLAILHDLRNRADFLRPYDLINRLLIRHGGRQNLIARLGHEAE 726 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D +D L+ L EQ+S SL ++ L+ +KR + + +R+MTVH AKGLE+P Sbjct: 727 DGIDALLSQALGYEQSSVPSLTGFLTWLQTEDVVVKRQMDSAGDRIRVMTVHGAKGLEAP 786 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DT +K + L G W P+S ++ D+ + + E Sbjct: 787 IVILPDTTK--------RKREVRGDLLTLGGHVYWKPKSDVMPQVMRDIQDDMLDAQDRE 838 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA + LI+ + +W+ V + + + V +I Sbjct: 839 RRRLLYVALTRAENWLIVAAAGDVGKGDN---DSWHRTVSSALDHLDAVDHPTAFGTIK- 894 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +S + P+ + + + + + P I PS + Sbjct: 895 ------RFSRWTWDAGPMVE---TTEATASKAVMPAFGKTLPDLPVLPGIRFPSELGGAK 945 Query: 767 KTNLESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 E+ + G IIH LL+++ + R + + + +L+ Sbjct: 946 TMEGETHTDTSDLALAWGSIIHFLLEILPEMDPTTRPGAAIGFTNNHPEAGLIPNIDDLI 1005 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 L+ P ++ + +E+ +S + D + G ID++ ++ ++ ++K+ Sbjct: 1006 KEALATLDAPDLSWIFASG-LAEIPISATLPSLGNDRM-HGIIDRLIVTDTDVIAVDFKS 1063 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + P+ E P Q++ Y LK YPN + LL++ +P L+ A Sbjct: 1064 NRVAPKTPEQTPDGLARQMAAYRDALKQIYPNHRIRTLLLWTKTGTTTELPNAMLDAALN 1123 Query: 946 EIST 949 ++T Sbjct: 1124 GVTT 1127 >gi|254718137|ref|ZP_05179948.1| ATP-dependent nuclease subunit A [Brucella sp. 83/13] Length = 855 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 285/864 (32%), Positives = 426/864 (49%), Gaps = 40/864 (4%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + DR ++ + LA+L L L Y + K++ +LDFEDLI T LL Sbjct: 1 DAAAARVKMGLDRLKELRLVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALL 60 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + W++YK+D+ I+HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVG Sbjct: 61 ARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVG 120 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 DEKQSIYSF GA P + R +A+NA KF + L SFRST D+L VD+VF+ Sbjct: 121 DEKQSIYSFQGAVPDDFAEQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFAR 180 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 PE +GLS H + R + G +++W+ + + + + W D L Sbjct: 181 PEANRGLSG----ATVHSAIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA-- 230 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A LA +IA TI + + G+ R I +DI+VLVRKR + Sbjct: 231 PAVRLAEQIAATIRYWLDRGELIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNL 286 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 + V G DR LT H+AI+DLMALGRF+L DDLS +LKSPLF + +D +F + R Sbjct: 287 SVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPR 346 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +T++EY+ + A+ ++ + K + ++A +F+ +L A R++ ++R Sbjct: 347 GAGDTLFEYLYR-ASRHDAELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLAR 405 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 G E D++DEF N+ L E+ LQ + LE P IKR +EVRIMTVH A Sbjct: 406 LGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAA 465 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKH 638 KGLE VVFLVD GS V++ K+ D P + +W P S + + I+ Sbjct: 466 KGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEK 525 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 LK +EEY RLLYVGMTRA D+LIIC + + + TW+ +V D+ Sbjct: 526 LKNRAEEEYRRLLYVGMTRAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVH 581 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 +T A P + EE +P P+K + P L Sbjct: 582 PVTGV-------AARRYRKTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLA 634 Query: 759 PSTIDTKGKTNLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 PS + + E L RG IH LLQ + + KR++ Sbjct: 635 PSGASALIEADEEPPLDLSSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAA 694 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866 Y + A WP E S+ +L++P + S EV+V G I+ +D +SG Sbjct: 695 DYLARIAADWPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSG 754 Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 +ID+IS+ + + I +YKT+ P+ +E +P+ + AQL++Y ++L+ YP + + L++ Sbjct: 755 QIDRISVDESRVLIVDYKTNRPPPKTLEAVPFAYRAQLALYRELLRPLYPRRVVEAALLF 814 Query: 927 VSEPKVFIIPQNKLNKAFAEISTK 950 P + +P L+ A + Sbjct: 815 TEGPFLLPVPDTVLDDAMGALKDT 838 >gi|265983090|ref|ZP_06095825.1| double-strand break repair helicase AddA [Brucella sp. 83/13] gi|264661682|gb|EEZ31943.1| double-strand break repair helicase AddA [Brucella sp. 83/13] Length = 847 Score = 574 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 285/854 (33%), Positives = 425/854 (49%), Gaps = 40/854 (4%) Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 DR ++ + LA+L L L Y + K++ +LDFEDLI T LL + W++ Sbjct: 3 LDRLKELRLVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQ 62 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 YK+D+ I+HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF Sbjct: 63 YKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQ 122 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA P + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS Sbjct: 123 GAVPDDFAEQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG- 181 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 H + R + G +++W+ + + + + W D L A LA +IA Sbjct: 182 ---ATVHSAIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIA 232 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 TI + + G+ R I +DI+VLVRKR + + V G DR Sbjct: 233 ATIRYWLDRGELIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRL 288 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 LT H+AI+DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ Sbjct: 289 QLTSHIAIQDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYL 348 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 + A+ ++ + K + ++A +F+ +L A R++ ++R G E D++D Sbjct: 349 YR-ASRHDAELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIID 407 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 EF N+ L E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFL Sbjct: 408 EFQNYALSAERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFL 467 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VD GS V++ K+ D P + +W P S + + I+ LK +EEY Sbjct: 468 VDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYR 527 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RLLYVGMTRA D+LIIC + + + TW+ +V D+ +T Sbjct: 528 RLLYVGMTRAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV----- 578 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 A P + EE +P P+K + P L PS + Sbjct: 579 --AARRYRKTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEA 636 Query: 769 NLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 + E L RG IH LLQ + + KR++ Y + A W Sbjct: 637 DEEPPLDLSSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADW 696 Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876 P E S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + Sbjct: 697 PDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES 756 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + I +YKT+ P+ +E +P+ + AQL++Y ++L+ YP + + L++ P + +P Sbjct: 757 RVLIVDYKTNRPPPKTLEAVPFAYRAQLALYRELLRPLYPRRVVEAALLFTEGPFLLPVP 816 Query: 937 QNKLNKAFAEISTK 950 L+ A + Sbjct: 817 DTVLDDAMGALKDT 830 >gi|254509530|ref|ZP_05121597.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium KLH11] gi|221533241|gb|EEE36229.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium KLH11] Length = 1119 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 236/958 (24%), Positives = 394/958 (41%), Gaps = 68/958 (7%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L RF L E + ++P V I+ + +E+G K AQ L ++ Sbjct: 208 LLRRFDLPEGFDEEALLHSVFPGGE--VELIDSMLPALIESGGNNA-KAAQKLGSFTKAG 264 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINK-KSPDLKEKLKKSQDEFIKIRDR 113 +L S LT K + + T+ + + D +L+ R++ Sbjct: 265 L--RILPVLESVLLTGKSAKEPFTAKIGSFPTKALREGALADRMPQLEALMLRVEAAREQ 322 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + T A YE K+ LDF+DLI+ +L V+ W+ Y++ Sbjct: 323 RLALVAAQKTHVLHRFAAAFLPEYERRKQMRGWLDFDDLILRARQVLNDPAVAEWVLYRL 382 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGA 232 D I+HIL+DE QDTS QW+VI L ++F G+ S RT+F VGD+KQSIYSF GA Sbjct: 383 DGGIDHILVDEAQDTSPDQWDVIEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGA 442 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P+ + + ++ +G K L SFRS++ IL++VD +F + Sbjct: 443 DPQAFDQMQAEFGRKLQESGSKLWDFTLEYSFRSSSAILSLVDILFEN-----RIEAGFH 497 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 HR+ + G V LW V + + WT D ILA ++A + Sbjct: 498 KDALHRAFKADLPGRVDLWPVV----EKVEDEVDGDWTDPVDRPGARHHTVILAEQVAKS 553 Query: 353 ISNMIGTDTIFSNGK-------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 I MI +T + +R +Q D L+LV++R D L + R K++ + + Sbjct: 554 IRAMIDGETTIPDDGEAPGAFVRRKVQPGDFLILVQRRSD--LFAEIIRACKSE-GLPIA 610 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 G DR + LA+KDL AL F+ + ED LS +LKS LF +SE +F + +R E Sbjct: 611 GADRLKVGAELAVKDLAALLSFLATPEDSLSLATVLKSSLFGWSEQQLFDLAHRRKE--- 667 Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525 ++ +F + +++L F P+D IL GRQ+ + R G E Sbjct: 668 --AFLWAALRSRGEEFPETLAVLNDLRGQTDFLRPYDLIERILTRHGGRQKLLGRLGAEA 725 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 D ++ L+ L E+ SL + ++ IKR S N +R+MTVH +KGLE+ Sbjct: 726 EDGINALLSQALAYERTDIPSLTGFLVWMQTDDLEIKRQMSGVGNMIRVMTVHGSKGLEA 785 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P+V L DTG + + P+W S + +VS + + + Sbjct: 786 PIVILPDTGKRQPPRD--------AEIMMAGETPLWKLPSDASPALVSSAREEARTREEN 837 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RLLYV +TRA LI+ + + +WY +V + Sbjct: 838 ERLRLLYVALTRAEKWLIVAAAGDVGKDG----SSWYQLVEAAMERAGAAP--------- 884 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 H L + +Q +P P + L+PS + Sbjct: 885 --IPGPQIRRLAHGNWDALPLAAQQQTAHSKQDLPAYFHQPAPEAPAQAETLSPSDLGGA 942 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 E+ + RG +H LL+ + + + + E LL Sbjct: 943 KALPGEAGRDEEAVKQRGTRMHLLLEHLPAVTQDQWPQLCDRLLA----DMQDTERSELL 998 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 T +L + + + +EV+VS + + G ID++ IS + + ++K+ Sbjct: 999 DEATAVLTAGHLKHIFTPAALTEVAVSADFH----GTRLHGVIDRLIISGDEVQVIDFKS 1054 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 + VP E P + Q+ Y + YP+ + +++ ++ +P + + +A Sbjct: 1055 NTTVPDGPETCPDGLLRQMGAYAHAMAQIYPDHQIRTAILWTRTAQLMWLPHDLVTEA 1112 >gi|75674249|ref|YP_316670.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255] gi|74419119|gb|ABA03318.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter winogradskyi Nb-255] Length = 1202 Score = 573 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 273/989 (27%), Positives = 440/989 (44%), Gaps = 57/989 (5%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 + G+ E E + +++ P S +L + TG+ +K+A+ L+ A Sbjct: 228 DALGVDPAERVEDVEREIVDGPNLPRSKWLDTAAL-IATGSSNDVKQAERLRAAHAEAGD 286 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 R FLT +P+K+ +T++I+ PD+ E L I + R + Sbjct: 287 AARADRYLDVFLTGDGSPRKSFVTRKISDARPDVAEMLADECQRVIALLGRRRAINIRDR 346 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T + L +A + AHY K + +LD++DLI T +L++ W+ YK+D+ ++H+LI Sbjct: 347 TQSLLVIAAAVAAHYRREKHERGLLDYDDLIDKTLRMLEQ-TSPGWVHYKLDRGVDHVLI 405 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DE QDTS QW+++ + DF G+ RT+FAVGDEKQSI+SF GA P+ + Sbjct: 406 DEAQDTSPKQWDIVERIIADFTTGEGAREGVRRTVFAVGDEKQSIFSFQGAAPREFDERR 465 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 R +++ T+A F + SFRS IL VD VF P + + H S Sbjct: 466 RKLERKFTDAKLPFRKEDFIYSFRSGKTILESVDHVFRDPAIYASIHAVGAHPV-HESLA 524 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 G V LW + + E W + FD++ S LARRI I ++I Sbjct: 525 DAAPGIVDLWSL----EERDKREEMEGWRAPFDAVTATSPEVKLARRIRDEIKSLIAQGA 580 Query: 362 IFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + + G +R + DILVLVR+R + + + LK I V G DR LT+H+AI D Sbjct: 581 MTGHLGNRRPLGYGDILVLVRRRGNA--FDAVIQALK-QSGIPVAGADRLKLTEHIAIID 637 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 LM L +L DDL+ LKSPLF +DD+FK+ QR T A K Sbjct: 638 LMNLADALLLPRDDLALAVALKSPLFGLDDDDLFKLAWQRKGTLRDALAGHATA---DDK 694 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540 F+ + + A +P FF +LG + GR++ + R G+E D LDEFL L E Sbjct: 695 FRDAFESLKRCESRAARDTPFAFFAWLLGEEAGRRRILRRLGHEANDALDEFLELALTCE 754 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + +SLQ ++ L +KR + +EVR+MTVH AKGLE+ VVFL DT + Sbjct: 755 RKAPASLQGFMAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLADTSTSPADT 814 Query: 601 KHIKKMHIMPSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + + + G+ IW + V+ + T+ EY RLLYV MTRA Sbjct: 815 ERLSLIRMGRGNAPAGVAGVTIWAGRKAEDPPCVAQARAAMTAETEHEYRRLLYVAMTRA 874 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH- 717 +D+LI+ +N K + +WY ++ N + T S + + Sbjct: 875 ADRLIVGG-CKPANRKDVREFSWYHLIEKGLANSGLAMQEIETASGKVKRFTRPDHDDPG 933 Query: 718 ---------------------------------HPENTPLEREETIKQLMDEQKIPKKLF 744 E +P L Sbjct: 934 SNRSRIMNVIDSNILERDAGGKPLHTFPHPALEEAEPDAAGPAPPASPGATRIPLPPWLH 993 Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLES---LLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801 + L PS D + ++ RG ++H+LLQ + +P +R Sbjct: 994 LAAAPEAPARRSLYPSDADEAAHQRAPAGAIPDQRHRARLRGTLVHRLLQSLPEVPRDRR 1053 Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861 + SY +NA W E+ L + +L++ + S +EV++ G++ + D Sbjct: 1054 REAALSYLGRNASGWGKTEHDALAARVVAVLDDARFAPVFAEGSRAEVAIVGRLTTRRGD 1113 Query: 862 II-ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 + +SG+ID++ ++ + + +YKT P + +P +I QL++Y +L YP + Sbjct: 1114 PLPVSGQIDRLVVTPHGVLVVDYKTS-PAPASLADVPPAYIRQLALYRAMLAGLYPELPV 1172 Query: 921 VCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 L++ P++ I + L+ A I + Sbjct: 1173 NAALLWTETPEMMEISASTLDAALEAIIS 1201 >gi|114762246|ref|ZP_01441714.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Pelagibaca bermudensis HTCC2601] gi|114545270|gb|EAU48273.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. HTCC2601] Length = 1125 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 249/958 (25%), Positives = 390/958 (40%), Gaps = 56/958 (5%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 GLS ++S E + ++ ++ + V+ ++ K LQ A T + Sbjct: 211 GLSPDDSEEALLASVFLGGEI---ELLREVATALAGSGKNDQKAG--LQLARITAPDLDA 265 Query: 66 FSLLSSFFLTQKFTPQ------KNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +L LT K + + T+ + L +L+ + R Sbjct: 266 LQILEGVLLTGKAAKEPFTAKIGSFPTKGLRTGALEPLMNRLEDLMRRVEQARQTRLALG 325 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 LA A+ YE K++ LDF+DL+I DLL V+ W+ Y++D I+ Sbjct: 326 AVGRELALHRFAQAFLPAYETEKQRRGWLDFDDLVIRARDLLSDERVAEWVLYRLDGGID 385 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDTS +QW+VI L +F G+ + RT+F VGD+KQSIYSF GA+P+ Sbjct: 386 HILVDEAQDTSPVQWQVIERLAHEFTSGEGARADVRRTIFVVGDKKQSIYSFQGADPREF 445 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 R +R S + L SFRS IL +VD F E A + +H Sbjct: 446 DRMCDEFAERLQRTEAPLSRMMLEYSFRSAEPILRLVDNTFDRREAAGF-----SQDQKH 500 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 R+ + G V LW V D + ++ W D + Q A ILA RIA I I Sbjct: 501 RAFKSEMPGRVDLWPHVEPTKD---DEEEADWYEPVDRIGQRHHAVILANRIAGFIDRTI 557 Query: 358 GTDTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 GT G R A D L+LVR R L + + R K + + + G DR + Sbjct: 558 GTPLPEEIGHSGSYKTRPAHAGDFLILVRGR--GTLFSEIIRACK-QHNLPIAGADRLKV 614 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 LA+KD+ AL F+ + EDDLS L+SPLF ++ +F + R Y+ Sbjct: 615 MSELAVKDIGALLAFLATPEDDLSLATALRSPLFGLTQQQLFTLAQGRK------GYLWA 668 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532 V+ + +L F P+D IL GR++ + R G E D ++ Sbjct: 669 ELRRNRDAVPRVMSVLDDLRSETDFLRPYDLIERILTRHDGRKRLLGRLGEEAEDGINAL 728 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 L L EQ SL + L+ IKRA + + +R+MTVH AKGLE+P+V L D Sbjct: 729 LAQALAYEQTEVPSLTGFLEWLQTDDLEIKRAPDSAGSRIRVMTVHGAKGLEAPIVILPD 788 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 I SL + +W + + + + + K++ Q E +RLLY Sbjct: 789 CAE--------PNSQIRDSLLEGETGTVWKASADRQPQVQAQALAEAKEADQRERDRLLY 840 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA L++ + S WYD V Sbjct: 841 VALTRAEKWLVVAAA----GKLGSQGNAWYDQVRIGMERSGAEP--TEFGFGGWGSGEGL 894 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + P ER E ++ E +P P ++PS + E Sbjct: 895 TLGRADWSDLPHERVEETPRI--EVDLPDVFRHPAAVPEAVAEAVSPSGLGGPKALGGED 952 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 + RG +H LL+ + LP R + + +L +E L +L Sbjct: 953 GDDTEEAMLRGTALHLLLEHLSALPPAARPDAVPHVLAIVEEL--PEETDRLAEEAIAVL 1010 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 E P + + S +EV +S I I G ID++ ++ + ++K++ VP Sbjct: 1011 ETPELGPFFAPGSLAEVPISASIEPVG---RIHGIIDRLLVTPDKVIAVDFKSNRTVPAT 1067 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 +P + Q+ Y L +P + + LI+ + +P + ++ A A +T Sbjct: 1068 PAEVPEGLLRQMGAYAAALAQIWPGREVETALIWTATQSYMALPHDLVSAALARATTA 1125 >gi|254476353|ref|ZP_05089739.1| double-strand break repair helicase AddA [Ruegeria sp. R11] gi|214030596|gb|EEB71431.1| double-strand break repair helicase AddA [Ruegeria sp. R11] Length = 1125 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 232/961 (24%), Positives = 397/961 (41%), Gaps = 67/961 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FGL + + + ++ +D+ + G K A+ L Q + Sbjct: 213 LLRLFGLPADFDRTALEQLVFLGGE---ADLLARTRAMLLQGGANDGKAAEKLSQIKEPT 269 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + +L S FLT + T+++ + + +L ++L+ R Sbjct: 270 LAD--LPVLESVFLTGASAKEPFTAKINGFPTKKLREANVELMDQLEPLMRRVEAARALR 327 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + + A YE K+ LDF+DLI+ LL V+AW+ Y++D Sbjct: 328 LALVAVEKSEILHRFAAAFLPEYERRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLD 387 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS +QW+V+ L ++F G+ S RT+F VGD+KQSIYSF GA+ Sbjct: 388 GGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGAD 447 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P R + R G L SFRS+A +L +VD VF E A Sbjct: 448 PDAFDRMQAEFSTRLDETGAGLQNAALEFSFRSSAAVLRLVDLVFKDSEAAGF-----HK 502 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 HR+ + G V LW V ++ WT D ILA RIA +I Sbjct: 503 DALHRAFKAELPGRVDLWPVVEKVDT----EEERDWTDPVDRPGARHHTVILAERIAASI 558 Query: 354 SNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +MI + ++R +Q D L+LV++R + L + + R K + + G Sbjct: 559 KDMIDTKVTIPEDGPERGSFRRRPVQPGDFLILVQRRSE--LFSEIIRACKAAR-LPIAG 615 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR + LA+KDL A+ F+ + ED LS LKSPLF ++E +F + +R + Sbjct: 616 ADRLKVGAELAVKDLAAVLSFLSTPEDSLSLAAALKSPLFGWTEQMLFDLAHRRDGGSHL 675 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 ++ ++ A +F + + +L F P+D IL GRQ+ + R G E Sbjct: 676 WKALRDRA----DEFPDTMAILDDLRGQTDFLRPYDLIERILTRHGGRQRLLGRLGPEAE 731 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D ++ L+ L E++ SL + ++ IKR A N +R+M+VH +KGLE+P Sbjct: 732 DGINALLSQALAYERSDIPSLTGFLVWMQTDDLEIKRQMGAAGNMIRVMSVHGSKGLEAP 791 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DT + + G P+W S ++ H + + E Sbjct: 792 IVILPDTAKRRPPRD--------EEIMRAEGGPVWKLPSAQMPQVMQAARDHAQDKQRNE 843 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA LI+ S + S + + ++ D + Sbjct: 844 RLRLLYVALTRAEKWLIVASAGELSKDGDSWYQMVERALQEAGAQDYDTGHGTGL-RLQH 902 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +W + + P ++P + L+PS + Sbjct: 903 GDWDGLPFHSEPPVEVVT------------PELPDVFLKQPPAYVAPVATLSPSDLGGAK 950 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE-HKRKNFITSYCTKNAKLWPAKEYKNLL 825 + + RG +H LL+ + + + + + +E NL+ Sbjct: 951 ALPGDLGQDEEAAKARGTRLHLLLEHLPQIADRTTWPEIARNLLAGH------EETDNLV 1004 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 T +L P ++ + D+ +EV++S +N + G ID++ I+ + + ++K+ Sbjct: 1005 AEATAVLTAPELSDIFAGDTLAEVAISADLN----GARLHGVIDRLIITNETVRAIDFKS 1060 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + VP + P + Q+ Y L YP+ + L++ + +P + ++ A Sbjct: 1061 NATVPASPQKCPEGLLRQMGAYAHALAQLYPDHRIETGLLWTRTASLMWLPHDLVSSALE 1120 Query: 946 E 946 Sbjct: 1121 R 1121 >gi|319403513|emb|CBI77092.1| ATP-dependent nuclease subunit A [Bartonella rochalimae ATCC BAA-1498] Length = 1152 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 291/964 (30%), Positives = 488/964 (50%), Gaps = 48/964 (4%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + F L+ +++ + + + + I Y P + Q + + Sbjct: 219 RAFFNLAPDDTNQRLLDKIQQIAALPSYAIKYY----QTHSTPKNKDIIEKFLQLATSSD 274 Query: 62 IEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 +L+S+ + + P+ + +++ ++ P ++++++ Q++ + D++ K+ Sbjct: 275 ETNIINLVSNIYFEKSGKPRDFSRLFSKKSDEVWPFIEKEIEDKQNQLPLLLDKYQCVKL 334 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 +A+ L Y + KK N +LDF+DLI T LL+ + S W++YK+D+ I+H Sbjct: 335 VTLNIAAFQLCDIYLKIYTDLKKANNLLDFDDLIERTLYLLQHKGASQWVQYKLDRGIDH 394 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 IL+DE QDT+ QW++I+ L ++FF G + ++ RT+FAVGDEKQSIYSF GA + Sbjct: 395 ILLDEAQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVLENFAE 454 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 RI QK+ QKF I+L SFRSTAD+L VD VF PEN +GLS + T+ H Sbjct: 455 NGRIIQKKVKQVEQKFEKIQLNYSFRSTADVLKSVDLVFESPENYKGLSAEHVKTV-HEP 513 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 R+ G V +W+ + + N + W S D L ++ LA +IA TIS+ + Sbjct: 514 IRVHSPGDVIIWDAISKK----TNEFPDDWLSTVDHL--DTPQICLAEKIAETISSWLKN 567 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + K R+++A DI+VLVRKR + L+R LK + + V G DR LT H++++ Sbjct: 568 GEMLPAKK-RLLRAGDIMVLVRKRDQ--FVPALSRALKLRH-VPVAGADRLQLTTHISVR 623 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DLMAL RF+L +DDLS C+LKSPLF+ SE++++++ T +++E + ++ Sbjct: 624 DLMALARFVLQPQDDLSLACVLKSPLFSLSENELYQL--AVQRTGSLWESLSTHSSSHAV 681 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 F+ + + ++ + +F++ IL KGRQ+ I+R G E +VLD F++ TL Sbjct: 682 -FKIIFERLNTYRTLVDKMPVFEFYSYILNNDKGRQKIIARLGTEANEVLDAFIDHTLTI 740 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++ LQ + L P IKR N EVRIMTVH AKGLE VVFLVD GS ++ Sbjct: 741 QKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAVVFLVDPGSAIWH 800 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 ++ D + IW P ++ ++ LK+ +EEY RLLYVGMTRA Sbjct: 801 PQYAPHFLKC--SLGDKQVFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYVGMTRAE 858 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 D+LIIC ++N K TW +V + K ++ A+ + Sbjct: 859 DRLIICGYTNQ----KETPNTWLQLVKKALKPHAVPIK------GPAEDITAWRYCITSS 908 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777 P+ +E + + +P + + ++ L PS + + Sbjct: 909 CPAPMYQEISCETHQIFPPLPAFFHNKVPTELTLSKPLRPSVVGINDTKTEFFPQKERFS 968 Query: 778 -------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + G IH+LLQ + P KR+++ Y A W + + Sbjct: 969 ISPVLGEKNTKKTFSIEYGNFIHQLLQHLPNYPPTKRQDYAQFYLNTKASHWHKTQREKA 1028 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 L I +L+NP + S S++EV++ G + K+ ++SG+ID++ I+ ++F ++K Sbjct: 1029 LHHIWTILDNPDLEPFFSNLSHAEVALMGIVKINGKEQMVSGQIDRLCITHNSVFFADFK 1088 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T P+ I H+ Q+++Y+K+L+ YP+K++ LLIY+ + K+F + KL+ Sbjct: 1089 TG-LSPENDTDIKKHHLLQMALYQKLLQTIYPDKNMHALLIYIKKAKIFKLLPEKLDALL 1147 Query: 945 AEIS 948 EI Sbjct: 1148 DEII 1151 >gi|259418122|ref|ZP_05742041.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B] gi|259347028|gb|EEW58842.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B] Length = 1121 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 241/961 (25%), Positives = 408/961 (42%), Gaps = 73/961 (7%) Query: 2 KNRFG----LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57 +N G L E + +++ +DI ++TG T K A+ L + S Sbjct: 204 RNALGEVFELPAGYDLEALRSEVFLGNE---ADILSRTIEMLKTGGATDAKNAEKLARIS 260 Query: 58 QTQCIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIR 111 E +L FLT K + + T+++ + L ++L+ R Sbjct: 261 SVTP--EVLPILEDVFLTGKSAKEPFSAKIGSFPTKKLRESHGTLMDQLEPFMARVETAR 318 Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 R +L A+ YE K+ LDF+DLI+ +LL V+AW+ Y Sbjct: 319 PRRLALDAMDKSLVLHDFARVFLPEYERRKQLRGWLDFDDLIVKARNLLNDPAVAAWVLY 378 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFH 230 ++D I+HIL+DE QDTS +QW+V+ L ++F G+ + RT+F VGD+KQSIYSF Sbjct: 379 RLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADVERTIFVVGDKKQSIYSFQ 438 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+P R + +R G+ L SFRS+A IL +VD VF + A Sbjct: 439 GADPDAFDRMQAEFGRRLEETGEGLQNASLAFSFRSSAAILGLVDVVFDGQDRAGF---- 494 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 +H++ + G V LW V + + + WT D + ILA RIA Sbjct: 495 -ARDAKHQAFKSDLPGRVDLWPLV----EKTEDEEDRDWTDPVDRPSPRHHSVILAERIA 549 Query: 351 YTISNMIGTDTIFSNG-------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 I MI + ++R + A D L+LV++R D L + + R K + Sbjct: 550 GQIKEMIDSGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSD--LFSEIIRACKA-TGLP 606 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 + G DR + LA+KD+ AL RF+ ED LS LKSP+F +SE +F + +R E Sbjct: 607 IAGADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLFDLAHRRTE- 665 Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 ++ F + + +L A F P+D IL GR + + R G Sbjct: 666 ----MHLWPALRARSEAFPETMAILDDLRGQADFLRPYDLIERILTRHLGRAKLLGRLGT 721 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 E D ++ L+ L E+ SL + ++ IKR A + +R+M+VH +KGL Sbjct: 722 EAEDGINALLSQALAYERTEVPSLTGFLVWMQTDDLEIKRQMGAASSMIRVMSVHGSKGL 781 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E+P+V L DT ++ P + + G P+W S + ++ Sbjct: 782 EAPIVILPDTTK--------RRPSPAPEVMEVEGTPLWRMSSDQMPPAMDAARAFAQEKQ 833 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E RLLYV +TRA LI+ + +WY V + + + Sbjct: 834 ANERLRLLYVALTRAEKWLIVAGAGDLDKGGD----SWYQRVEAALKTMDALP--FDAPG 887 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-TI 762 + W +W+ + L EE I +P + L PS + Sbjct: 888 GDGLRWAHGDWNAPPFVPSDLTEEEEI-------TLPDVFRHAAPAYVAPTATLRPSEDL 940 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 +S LS+ + RG +H LL+ + +P+ + +++ Sbjct: 941 GGVKALPGDSGLSEEEAKARGTALHLLLEHLPNVPQADWDSRAEHIAQH-------DDWQ 993 Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882 LL+ ++L +P + ++ +EV ++ + D + G ID++ ++ + + Sbjct: 994 VLLIEARQVLSSPECKEIFAPNTLAEVPITADL----GDTRMHGIIDRLVVTPDRVLAVD 1049 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 +K++ VPQ E P + Q+ Y+ L+ YP++ + +++ + +P + + Sbjct: 1050 FKSNAVVPQSPETCPEGLLRQMGAYDAALRQIYPDRQIETAILWTRTATLMSLPVTLITQ 1109 Query: 943 A 943 A Sbjct: 1110 A 1110 >gi|83942010|ref|ZP_00954472.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. EE-36] gi|83847830|gb|EAP85705.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. EE-36] Length = 1125 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 226/959 (23%), Positives = 393/959 (40%), Gaps = 68/959 (7%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 F + + E I ++ + + + + G K A+ L A+ Sbjct: 211 ALFDQPADLTEEKITTSVFLGSEAMI--LEQMIPPMRAKGGL-DGKAAEKL--ATIQTMD 265 Query: 63 EERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 +L LT + + T+ K DL ++ RD Sbjct: 266 ISALPVLEDVMLTGAGAKEPFTAKVGTLPTKPTQKLLFDLMPQVDDLMRRVEDARDARLA 325 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + T A Y K+K LDF+DLI+ LL V+AW+ Y+ID Sbjct: 326 LRAAQKTHVLHQFAHRFLEIYAHEKQKRGWLDFDDLILKARALLTNPAVAAWVLYRIDGG 385 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VI L ++F+ G RTLF VGD+KQSIYSF GA+P+ Sbjct: 386 IDHILVDEAQDTSPRQWDVIERLADEFYSGDGAREEEDRTLFVVGDKKQSIYSFQGADPR 445 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 ++ + +++ + AGQ F L SFRS++ IL +VD + +A Sbjct: 446 EFDHKQDLFEQKISQAGQIFQRRSLEYSFRSSSAILHLVDTTLAPHTDAGF-----QADA 500 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H++ + G V LW V + P W+ D +LA ++A I Sbjct: 501 AHKAFKSALPGRVDLWPVVEKTDE----PDDREWSDPVDQKSAHHHTVVLADQVASQIKE 556 Query: 356 MIGTDTIFSNGK-------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +I + +R I+A D L+LV++R D L + + R K + + G D Sbjct: 557 LIEGEHYLPVDTDTPGAFARRRIRAGDFLILVQRRSD--LFSEIIRACKT-AGVPIAGAD 613 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 R + LA+KDL AL F+ + ED LS LKSPLF ++E +F + R E +++ Sbjct: 614 RLKVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQMLFTLSHYRKED-HLWQ 672 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528 ++ + + + +L F P+D IL GR++ ++R G+E D Sbjct: 673 ALRS-----SDAYPETVAILRDLRAQVDFLRPYDLIERILTRHDGRRKLLARLGSEAEDG 727 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 ++ L+ L E+ + SL + ++ IKR ++VR+MTVH AKGLE+P+V Sbjct: 728 INAMLSQALSYERGAIPSLTGFLVWMQTDDLEIKRQIDNASDQVRVMTVHGAKGLEAPIV 787 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 L DTG + + I + P+W + + K E Sbjct: 788 ILPDTGKRP--------LVIRDEIIKIGDTPVWKLSEGDMPAAMRGALDDRKAREMAERL 839 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RLLYV MTRA LI+ E + +WY MV + Sbjct: 840 RLLYVAMTRAEKWLIVAAA----GELPKDGNSWYQMVGAAMGQAGAKPV----------- 884 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 + H + L ++ + ++ + + L PS + Sbjct: 885 GSSGGMRFEHGDWDALPVIDSAPKTHTTPELDPVFNTALTVIPLRAKTLAPSDLGGAKAL 944 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 + S++ + G ++HK+L+ + + + + + A+ + + L Sbjct: 945 PGDDGQSEDAAKSYGNLVHKMLETLPMMHSDRWNGVLHTL----AQGYDETVAQAALREA 1000 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +L+ P + D+ +EV ++ + + G ID++ +S ++ + +YKT+ Sbjct: 1001 IAVLDTPELAHVFGKDALAEVPITAPL----GPKRLHGTIDRLLVSDTDVLLVDYKTNRV 1056 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 VP + P + Q+ Y L +P+ + +++ + +P + A + + Sbjct: 1057 VPDTPDRCPEGLLRQMGAYAAALAQVFPDHRIRTAILWTRTATLMELPDALITNALSRV 1115 >gi|319406427|emb|CBI80067.1| ATP-dependent nuclease subunit A [Bartonella sp. 1-1C] Length = 1152 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 293/964 (30%), Positives = 486/964 (50%), Gaps = 48/964 (4%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + F L+ N++ + + + + I Y P + Q + + Sbjct: 219 RTFFNLAPNDTNQQLLDKIQQIAALPSYAIKYY----QTHSTPKNKDIIEKFLQLATSSD 274 Query: 62 IEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 +L+S+ + + P+ + +++ ++ P ++++++ Q++ + D++ K+ Sbjct: 275 ETNIINLVSNIYFEKSGKPRDFSRLFSKKSDEIWPFIEKEIEDKQNQLPLLLDKYQCVKL 334 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 +A+ L Y + KK N +LDF+DLI T LL+ + S W++YK+D+ I+H Sbjct: 335 VTLNIAAFQLCDIYLKIYTDLKKANNLLDFDDLIERTLYLLQHKGASQWVQYKLDRGIDH 394 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 IL+DE QDT+ QW++I+ L ++FF G + ++ RT+FAVGDEKQSIYSF GA + Sbjct: 395 ILLDEAQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVLENFAE 454 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 RI QK+ QKF I+L SFRSTAD+L VD VF PEN +GLS + T+ H Sbjct: 455 NGRIIQKKVKQVEQKFEKIQLNYSFRSTADVLKSVDLVFESPENYKGLSAEQAKTV-HEP 513 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 RI G V +W+ + + N + W S D L ++ LA +IA TISN + Sbjct: 514 IRIHSPGDVIIWDAISKK----TNEFPDDWLSTVDHL--DTPQIRLAEKIAETISNWLKN 567 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + K+R+++A DI+VLVRKR + L+R LK + + V G DR LT H++++ Sbjct: 568 GEMLP-AKQRLLRAGDIMVLVRKRDQ--FVPALSRALKLRH-VPVAGADRLQLTTHISVR 623 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DLMAL RF+L +DDLS C+LKSPLF+ SED+++++ T +++E + ++ Sbjct: 624 DLMALARFVLQPQDDLSLACVLKSPLFSLSEDELYQL--AVQRTGSLWESLSIHSSSHTV 681 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 F+ + ++ + +F++ IL KGRQ+ I+R G E +VLD F++ TL Sbjct: 682 -FKIIFDRLNTYRTLVDKMPVFEFYSYILNNDKGRQKIIARLGTEANEVLDAFIDHTLTI 740 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++ LQ + L P IKR N EVRIMTVH AKGLE +VFLVD GS ++ Sbjct: 741 QKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAIVFLVDPGSAIWH 800 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 ++ D IW P ++ ++ LK+ +EEY RLLYVGMTRA Sbjct: 801 PQYAPHFLKC--SLGDKQAFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYVGMTRAE 858 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 D+LIIC ++N + TW +V + K ++ A+ + Sbjct: 859 DRLIICGYTNQ----RETPNTWLQLVKKALKPHAVPIK------GPAEDITAWRYCITPS 908 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777 P+ +E + + +P + + + L PS + + Sbjct: 909 CPAPMYQEISCETHQIFPPLPAFFHNKVPTESTLSKPLKPSVVGINDTKTKFFPQKERFS 968 Query: 778 -------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + G IH+LLQ + P KR+++ Y A W + + Sbjct: 969 ISPVLGEKNTKKTFSIEYGNFIHQLLQHLPNYPPTKRQDYAQFYLNTKASHWHKTQREKA 1028 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 L I +L+NP + S S++EV++ G + K+ ++SG+ID++ I+ ++F ++K Sbjct: 1029 LHHIWTILDNPDLKPFFSNLSHAEVALMGIVKINGKEQMVSGQIDRLCITHNSVFFADFK 1088 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 T P+ I H+ Q+++Y+K+L+ YP+K++ LLIY+ + K+F + KL+ Sbjct: 1089 TG-LSPENDTDIKQHHLLQMALYQKLLQTIYPDKNMHALLIYIKKAKIFKLLPEKLDALL 1147 Query: 945 AEIS 948 EI Sbjct: 1148 DEII 1151 >gi|254465049|ref|ZP_05078460.1| double-strand break repair helicase AddA [Rhodobacterales bacterium Y4I] gi|206685957|gb|EDZ46439.1| double-strand break repair helicase AddA [Rhodobacterales bacterium Y4I] Length = 1117 Score = 568 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 240/960 (25%), Positives = 395/960 (41%), Gaps = 67/960 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FGL + ++ ++ + ++ G T K A L A T+ Sbjct: 207 LLELFGLPEGFDETALEALVFLGGE---EELLQRAREMLKQGGSTDQKAAAQL--AGITK 261 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + L S FLT + T+++ + L ++L+ R + Sbjct: 262 PALADLTTLESVFLTGASAKEPFTAKIDKFPTKKLREAHLSLMDQLEPLMRRVEDARAKR 321 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + + A YE K+ LDF+DLI+ LL V+AW+ Y++D Sbjct: 322 LALTAARKSHDLHRFAAAFLPEYERRKQLRGWLDFDDLILKARQLLNDPGVAAWVLYRLD 381 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS +QW+VI L ++F G+ S RT+F VGD+KQSIYSF GA+ Sbjct: 382 GGIDHILVDEAQDTSPVQWDVIEKLAQEFTAGEGARSDVERTIFVVGDKKQSIYSFQGAD 441 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P R ++ R G L SFRS+A IL +VD VF A Sbjct: 442 PDAFDRMQQEFGNRLAETGAGLQDASLDFSFRSSAAILKLVDLVFRDSPRAGF-----RK 496 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H++ + G V LW V D + WTS D ILA RIA +I Sbjct: 497 DALHQAFKSDLPGRVDLWPVVGKVEDDEDP----DWTSPVDRPSSRHHTVILAERIARSI 552 Query: 354 SNMI-------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 MI ++R +QA D L+LV++R D L + + R K ++ + G Sbjct: 553 KQMIYTGATIPEDGPERGTFQRRPVQAGDFLILVQRRSD--LFSEIIRACK-KAELPIAG 609 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR + LA+KD+ AL RF+ ED LS LKSPLF ++E +F + R E + Sbjct: 610 ADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPLFGWTEQALFDL-AHRREAMYL 668 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 + ++ A ++F + +++L A F P+D IL GRQ+ + R G E Sbjct: 669 WPALRGRA----AEFPETMAVLNDLRANADFLRPYDLIERILTRHGGRQKLLGRLGPEAE 724 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D ++ L+ L E+ SL + ++ IKR A N +R+M+VH +KGLE+P Sbjct: 725 DGINALLSQALAYERTDVPSLTGFLVWMQTDDLEIKRQMGAAGNMIRVMSVHGSKGLEAP 784 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DT + + G P+W + + ++ Q E Sbjct: 785 IVILPDTAKRQPPRD--------AEIMLADGTPVWKLPKDQMPPAMLAAREAAQEKLQNE 836 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA LI+ + +WY + + + + + Sbjct: 837 RLRLLYVALTRAEKWLIVASAGEVGEQGD----SWYRLTERAMRDGGATEFDTVGG---- 888 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + PL E I+ + ++P+ P + L+PS + Sbjct: 889 ---TGLRLQHGDWDGLPLVLPEAIE--AAKHELPEVFTRPARAYAAPAPALSPSDLGGAK 943 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + L + RG +H LL+ + + + + LL Sbjct: 944 ALPGDQGLDEEAAKARGSRLHLLLEHLPGRADADWPQLAQNLLQGAG------DCAELLA 997 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + +L N + D+ +EV ++ +N + G ID++ I+ +++ ++K++ Sbjct: 998 EASAVLRNAALADVFHPDTLAEVPITADLN----GARLHGIIDRLIITPESVLAVDFKSN 1053 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 VP E P + Q+ Y L YP +++ L++ + +P + + A Sbjct: 1054 ATVPAAPEQCPEGLLRQMGAYAHALALIYPGRTIGTALLWTRTATLMPLPHDLVTAALKR 1113 >gi|118593731|ref|ZP_01551100.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614] gi|118433641|gb|EAV40304.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614] Length = 1178 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 292/960 (30%), Positives = 456/960 (47%), Gaps = 44/960 (4%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF- 66 + ++ Y ++ TG T +A L A++ F Sbjct: 240 DPALRLADFDEQFRTACPLDLNTCLAYAE-ALRTGTKTDQARADDLVAAARFTGSAAAFR 298 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 + FLT K P+K++ T+++ + P++ E L+ Q + + D+ ++ T + Sbjct: 299 EAWQAIFLTAKLEPRKSLATKKVAEAFPEMLEALEAEQQRLLALLDQRRKVATYEGTSSL 358 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L LA + HYE AK LDFEDL++ T LL+K D + W++YK+DQ ++HIL+DE Q Sbjct: 359 LRLADAVIGHYERAKTARGYLDFEDLVVKTATLLQKSDAALWVQYKLDQGLDHILVDEAQ 418 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DTS QWEV+ SL +FF G RTLFAVGDEKQSIYSF GA P +R Sbjct: 419 DTSPRQWEVVTSLASEFFAGTGARDRVRTLFAVGDEKQSIYSFQGAVPAYFDAMRRAFSG 478 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +A A +F + L LSFRST D+L VDKVF +GLS+D + H + R G Sbjct: 479 KAEAAELEFHSVNLQLSFRSTPDVLGAVDKVFHDESAHKGLSQDVKAPV-HEAIRRD-PG 536 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 V LW + + W D + S +ARRIA I+ + T Sbjct: 537 IVDLWPL----EAEAEIEEPDDWRQPIDHVGSGSPMLKVARRIAAEIAQWMRDGT----- 587 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 D+++LVRKR + I G+DR +LTDH+A++DL ALGR Sbjct: 588 ----ADPGDVMILVRKRG---PFVEALNRELKELDIPAAGSDRLVLTDHIAVQDLAALGR 640 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC--GISKFQHV 484 F+L EDDLS C+LKSPLF+ ++DD+ ++ + E Q K++ V Sbjct: 641 FLLLPEDDLSLACVLKSPLFDLTDDDLLEVARETPEKVRPGTLWQMLVKRSDTSDKWKAV 700 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544 + + A F P++F+ +LGA GR+ F +R G EV DVLDEFL T+ EQ+ Sbjct: 701 RAKLEDWRARADFVPPYEFYARLLGADGGRKAFRARLGVEVDDVLDEFLALTIAYEQSGT 760 Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 L+ ++ + P IKR + VRIMTVH +KGLE+ +V LVD G+ S H Sbjct: 761 PGLEGFLAWMAAAPTEIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGAAPVSAIHDP 820 Query: 605 KMHIMPSLNDD--PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 L +D P +W+P R ++ L+ + +EEY RLLYV +TRA D+L Sbjct: 821 AFLPRRRLENDLLPPALVWLPPKADRTPWHDAAVEALRDAQEEEYRRLLYVALTRAEDRL 880 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 I+C ++ +++ WY MV + + + + W + T Sbjct: 881 IVCGW---EPKRGAHENCWYSMVSRALKPEA---RELTASDGAVSAWRWQKEGTAAGPEA 934 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTNLESLLSDN 777 + + +E +P L +P++ L PS + +G + ++ Sbjct: 935 GGAAHVSAEPGSEEPPLPDWLSTPVRPLPK-KKRLQPSRAFEAMEEKEGIDPVPAVSRLQ 993 Query: 778 QTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 RG +IH+LL+++ + E +R +Y + K A +LL + Sbjct: 994 AGRDLASWPLERGRLIHRLLELLPDIAEGERLAASEAYLRQALKPEFADRSSHLLREVAA 1053 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHV 889 +L+ P T + +EV + G I ++ ISG+ID++ + + I +YKT+ H Sbjct: 1054 ILDMPEFETLFCGHARAEVPLVGTIRASDGTEVEISGQIDRLVVEDNRVVIVDYKTNFHP 1113 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 P + IP + AQL +Y ++LK YP + + L++ + P + IP+ L + FA + Sbjct: 1114 PASVAEIPLEYRAQLCVYREMLKQIYPGREISAQLLWTAVPSLMEIPEKVLEETFAGLRP 1173 >gi|149912864|ref|ZP_01901398.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. AzwK-3b] gi|149813270|gb|EDM73096.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. AzwK-3b] Length = 1123 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 245/957 (25%), Positives = 399/957 (41%), Gaps = 55/957 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G N + + I ++ + + ++ K A L+ AS + Sbjct: 207 LAQALGQPGNLTLDDITARVFLGSEQD---LLNQLIPALRASGTNDQKAA--LRLASIDR 261 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +L S FL + + T+ + ++ + + RD Sbjct: 262 LDASALPVLDSVFLFGDSAKEPFSAKIGSFPTKAGRAPIDAIMPQIDQWMARVEEARDAR 321 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + T A+ Y+ AK LDF+DLI+ LL V+AW+ +++D Sbjct: 322 LALATIQKTRTLHEFARVFLTAYDRAKALRGWLDFDDLILRARQLLTDPAVAAWVLFRLD 381 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS +QW+VI L ++F G+ + RT+F VGD+KQSIYSF GA+ Sbjct: 382 GGIDHILVDEAQDTSPVQWQVIERLAQEFTSGQGARADVTRTIFVVGDKKQSIYSFQGAD 441 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P R K R GQ +E+ SFRS++ IL +VD F+ ++ T Sbjct: 442 PDEFDRMKGDFATRLHATGQPLQDMEMEYSFRSSSAILDLVDHTFANSRDSGF-----TP 496 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H++ + G V LW + + W D A++LAR+IA TI Sbjct: 497 EQGHKAFKSDLPGRVDLWPVIEKPDQDEDPE----WHMPVDVKAANDPATLLARQIALTI 552 Query: 354 SNMIGTDTIFSNGKK----RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 M+ + R I+ DIL+LV++R + L L R K + + G DR Sbjct: 553 RRMVDDKQPIPDKASPSGLRPIRPGDILILVQRR--STLFHELIRECKTQ-NLPIAGADR 609 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + LA+KDL AL F+ + EDDLS L+SPLF +SE +F +R + ++ Sbjct: 610 LKVGAELAVKDLAALLSFLATPEDDLSLATALRSPLFGWSEAQLFDRAHKRTQR-YLWAA 668 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529 ++ A S F + + +L A + P+D IL GR++ ++R G E D + Sbjct: 669 LRDRA----SDFPETMAVLDDLRRKADYLRPYDLIERILTRHDGRRKLLARLGAEAEDGI 724 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 D L + EQ + SL + +E IKR + N VR+MTVH AKGLE+PVV Sbjct: 725 DALLMQAMAYEQRAVDSLTGFLVWMETDDLEIKRQMDSAGNRVRVMTVHGAKGLEAPVVI 784 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L DT + + I + G P W S + + + + E +R Sbjct: 785 LPDTAK--------RDIRIRDQITTSNGTPFWRSASGEAPAAIVRASDAARDAQRAERDR 836 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV MTRA LI+ + ++ + + + D Sbjct: 837 LLYVAMTRAETWLIVAAAGDLGKNGEAWYEKVQAGLQAA-------------GATAHDFD 883 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + H + + +P P + P L PS + Sbjct: 884 LGQGLRLQHGDWAGTVSDPPADATHSTTPLPAHFQQPAPPPVLPPETLKPSDLGGDKALP 943 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 E L ++ RG IH+LL+ + T+P+ + + + +E + LL Sbjct: 944 DERGLDEDAAKRRGRQIHRLLEFLPTVPQSDWPETAGTLLSNGSDAAEGEELRLLLAEAE 1003 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 ++L P + D+ EV VS ++ I G ID++ IS + ++KT+ V Sbjct: 1004 KVLTKPSLQFLFQPDALCEVPVSASLDA-LGGRRIHGIIDRLLISPDRVLAVDFKTNAGV 1062 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 P EH+P + Q+ Y L YP++ + L++ + ++P + + KA + Sbjct: 1063 PDTAEHVPTALLRQMGAYANALALIYPDRPVETGLLWTRNATLTLLPHDLVTKALRD 1119 >gi|328545810|ref|YP_004305919.1| Double-strand break repair helicase AddA [Polymorphum gilvum SL003B-26A1] gi|326415550|gb|ADZ72613.1| Double-strand break repair helicase AddA [Polymorphum gilvum SL003B-26A1] Length = 1165 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 288/964 (29%), Positives = 464/964 (48%), Gaps = 47/964 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G++ E+ + + + V+ ++ G T KA L A T Sbjct: 225 LAGDLGVAPGETGAAVDARMRDETLIPLDT-ATSVAEALRRGTKTDCDKADRLVAAGATT 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + FL Q T K+++T+ I ++ PD+ + + + Q + + +R Sbjct: 284 DPQAWCETWLGVFLKQDLTAPKSLVTKRIAEEFPDVLDLMLREQARLLALVERRRAAVTL 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A L LA + A YE K + +LDFEDL++ T +LL + + W++YK+DQ ++HI Sbjct: 344 EGTAAILRLADAVIADYEAVKARRGLLDFEDLVVRTANLLSVSEAAQWVQYKLDQGLDHI 403 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDTS QWEV+++L E+FF G+ + RT+FAVGDEKQSIYSF GA P Sbjct: 404 LVDEAQDTSPRQWEVVKALAEEFFAGEGARTRARTIFAVGDEKQSIYSFQGAVPAYFDEM 463 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 +R ++RA A + F +EL LSFRST D+L VD VF PE +GLS+ + + H + Sbjct: 464 RRYFERRAREAARDFHPVELQLSFRSTPDVLGAVDLVFQQPEVHKGLSQVARAPV-HEAI 522 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 R G V++W + + + WT+ D + + + LARRIA T+ I Sbjct: 523 RRE-PGLVEIWPLELPDKTVEPD----DWTAPIDRIGEGNPMLRLARRIAETLRIWIDEG 577 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 T A D+LVLVRKR I G+DR +LTDH+A+KD Sbjct: 578 T---------ADAGDVLVLVRKRG---AFVEALNRELKRLDIPAAGSDRLVLTDHIAVKD 625 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---QRHETETVYEYIQKFANCG 477 L+ALGRFIL EDDLS C+LKSPLF +D + +I R T+++ + + + Sbjct: 626 LIALGRFILLPEDDLSLACVLKSPLFGLDDDALLEIARDPVDRLRAGTLWQSLLRKS-ET 684 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 +++ V K + A F P +F+ +L A GR++F +R G EV DVLDEFL + Sbjct: 685 ETRWLSVRKALETCRSRADFMPPFEFYARLLAADDGRRKFRARLGAEVDDVLDEFLALAM 744 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 EQ L+ ++ LE P IKR + VRIMTVH +KGLE+P+V LVD GS Sbjct: 745 SYEQTGTPGLEGFLAWLEAAPTQIKRELTNAGGLVRIMTVHGSKGLEAPIVILVDPGSAP 804 Query: 598 FSHKHIKKMHIMPSLND--DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +H + P D P +W+P R ++ + ++++ +EEY RLLYV M Sbjct: 805 AVARHDPALLERPRGTDPMVPPALVWLPTKADRTGWHAEAVDAVREAAEEEYRRLLYVAM 864 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA D+L++C + + +++ W+ +V + K + + W Sbjct: 865 TRAEDRLLVCGW---APSRGAHEACWHSLVAAALVPQAEEIKDA------AGRTVCWRWQ 915 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 E P + E + P L P+ P + + + ++ Sbjct: 916 KAGAEPPPRVKAEAAPAAEPPAR-PDWLVRPVPPAPQVPRLQPSRAFEAMEQKEGIEPVA 974 Query: 776 DNQ-----------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG ++H+LL+ + LP +R + A+ L Sbjct: 975 GRTALEAIRQPAGWALERGRLMHRLLETLPDLPAAERAAAAVRFVEAALPQRFAQHRDAL 1034 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII-ISGRIDQISISQQNIFIFEY 883 L R+L + +EV++ G + P + +SG+ID++ + I +Y Sbjct: 1035 LDEAERILAGADFAPLFAARGRAEVAIVGTLTGPDGRQVAVSGQIDRLVEEPGRVLIVDY 1094 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT+ P +E +P ++AQL++Y ++++D +P + L++ + P + +P + L+ A Sbjct: 1095 KTNARPPALLEGVPEEYLAQLAVYRRLVQDIFPGLPVEAALLWTAAPSLMPLPGDLLDAA 1154 Query: 944 FAEI 947 F+ + Sbjct: 1155 FSRL 1158 >gi|21328716|gb|AAM48722.1| helicase, UvrD/Rep family [uncultured marine proteobacterium] Length = 1118 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 221/957 (23%), Positives = 398/957 (41%), Gaps = 62/957 (6%) Query: 1 LKNRFGLSLNESYELIYKD-LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59 + GL + ++ P + + ++ + E N K + LQ S Sbjct: 207 IWKALGLPAGYDDASLAQECFLPGDFQHIEELKTLLMTKDE--NSNDFKAGRRLQAISGP 264 Query: 60 QCIEERFSLLSSFFLTQKFT-----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + L S FL + ++ T+ + P + + ++ R Sbjct: 265 ELTTADLPTLESVFLNKTGKAPGSAKIRSFPTKATRAELPGMAQ-VEALMLRVEAGRQSR 323 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + + + +LA A Y K+ LDF DLI+ T LL V+ W+ +++D Sbjct: 324 LSLNVARRSLALYDFAAEFLGTYRARKQARGFLDFNDLIMRTRHLLSDERVATWVLFRLD 383 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS QW+VIR L ++F G+ + PRT+F VGD+KQSIYSF GA+ Sbjct: 384 GGIDHILVDEAQDTSPAQWDVIRLLAQEFTSGEGARADVPRTIFVVGDKKQSIYSFQGAD 443 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P R + ++ Q F L SFRS++ IL VVD+VF+ S Sbjct: 444 PDGFDRMRDQFSQKLHEIDQPFQSTTLDYSFRSSSAILGVVDQVFANRSGLGSGSA---- 499 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H + + G V +W + + + W D + + LA +A I Sbjct: 500 ---HLAFKADLPGRVDVWPVFQAPDKT----EPHQWMDPVDEVSTDHQDKQLADALAGHI 552 Query: 354 SNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 ++I T+T+ +R I A D L+LV+ R L + R K + + + G D Sbjct: 553 CDLIETETLTQLDATGAAFQRKITAGDFLILVQGR-QKLLFREIHRACK-EAGLPIAGAD 610 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 R + LA++D+ +L F+ ED+LS LKSPLF +SE ++F + R Sbjct: 611 RLKVAAELAVRDIRSLLAFLALPEDNLSLAEALKSPLFGWSEQELFDLAQGRDSP----- 665 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528 ++ + +F + ++ + EL +A F P + IL GR + + G E + Sbjct: 666 FLWRSLQNREEEFPNTVQRLTELRDLADFKRPFELIEHILTTYGGRSALLGQLGPEAAEG 725 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 +D ++ +L E+++ +L + L+ IKR + +++R+MTVH AKGLE+P+V Sbjct: 726 IDALVSQSLAYERSNIPNLTGFLVWLDADDLEIKRQMDSVGDKIRVMTVHGAKGLEAPIV 785 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 L DT + +P + I +W P + +K ++ +EE + Sbjct: 786 ILPDTAPRKAPK--------LPEVVPHNTIAVWSPNKDLIPAALQSSLKDKQRQQEEERD 837 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RLLYV MTRA LI+ + K+ ++ I + + Sbjct: 838 RLLYVAMTRAESWLIVMGSGDIKEGKE-------------CWHNAIQDAISALGAAPLNT 884 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 + + + + ++ + +Q +P K +PS + Sbjct: 885 VAGLGLRYEPMQWSAGPQSDPVQPQVMKQSVPSWAIPYTKPAQAPAAPRSPSDLGGDKVL 944 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 + G +H+LL+V+ P+ + + + + Sbjct: 945 PGGAPQDAENAKRLGTAVHRLLEVLPNAPQDQWGHIAQRLVEADIQ-------AAAFQEA 997 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +L+ P + + +S +EV +S + D I G ID++ IS + ++K++ Sbjct: 998 RAVLQKPELAYIFAPESLAEVDISAHLPELNGD-PIQGSIDRLLISPTRVLAVDFKSNQI 1056 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 VP E+ +P + Q+ Y L YP+ + +++ ++ +P + + + A Sbjct: 1057 VPSEVAQVPSGLLRQMGAYAAALSQIYPHHDIETAILWTKTLELMPLPPDLVILSLA 1113 >gi|254453452|ref|ZP_05066889.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 238] gi|198267858|gb|EDY92128.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 238] Length = 1128 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 235/964 (24%), Positives = 416/964 (43%), Gaps = 58/964 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L F + + + + + + + I + + + + +G K A L+ Sbjct: 207 LAQTFDIPSSLTLSGLIDAI--VGPDDLDAIQRLIPICLASGT-NDQKAAIKLKAIDLNT 263 Query: 61 CIE-ERFSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 + +++ FL K + T+ I +PDL ++L RD Sbjct: 264 PPDMAVLAVMEDVFLFGKDAKNPYGAKIDSFPTKAIRTANPDLIDELNDLMQRVEDGRDT 323 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + + + A + A YE K + LDF+DLI LL+ V+ W+ +++ Sbjct: 324 RWCWLALEKSRALIAFATPFVRGYETKKVQRAALDFDDLISKAKALLEDPAVAQWVLFRL 383 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGA 232 D ++H+L+DE QDT+ QW+++R LT++F G + RT+F VGD+KQSIYSF GA Sbjct: 384 DGGVDHVLVDEAQDTAPDQWDIVRLLTQEFSTGIGANPDRERTVFVVGDKKQSIYSFQGA 443 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P+ R + +EL SFRS+A +L +VD+ F ++E Sbjct: 444 DPEGFDRMSDHFSGELNKVQKSLHKLELLYSFRSSAAVLQLVDQTFK-----GEMAEGLG 498 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 I H + + G V +W + P++ W D + + +LA +IA Sbjct: 499 NHIEHIAFKDTMPGRVDVWPVIEPSEK----PEERDWDDPVDFKGRTNHKVVLATQIATE 554 Query: 353 ISNMIGTDTIFSN------GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I MI +T+ +R I D+L+LV+ R D L + + K + + G Sbjct: 555 IKRMIAHETLPVKVADDTGWSRRKITPGDVLILVQGRSD--LFSEIIVACK-KAGLDIAG 611 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR L LA+KD+ AL +F+ Q+DDLS LKSPLF ++E ++ + R + +T+ Sbjct: 612 ADRLKLGGELAVKDISALLQFLALQDDDLSLAAALKSPLFGWTEKQLYDLAQPRKKQQTL 671 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 +E ++ + + +H+L + A F P+D +L GR+ I+R G+E Sbjct: 672 WEALRTSGTH-----EDTLAIVHDLRNRADFLRPYDLINRLLIRHSGRRNLIARLGHEAE 726 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D +D L+ L EQ++ SL ++ L+ +KR + + +R+MTVH AKGLE+P Sbjct: 727 DGIDALLSQALGYEQSAVPSLTGFLTWLQTEDVVVKRQMDSAGDRIRVMTVHGAKGLEAP 786 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DT +K + L G W P+S ++ D+ + + E Sbjct: 787 IVILPDTTK--------RKREVRGDLLTTGGYVYWKPKSDVMPQVMRDIQDDMLDAQDRE 838 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA + LII + K Q +W+ V ++ + + V+ +I + Sbjct: 839 RRRLLYVALTRAENWLIIAAAGDVG---KEPQDSWHGTVSNALDHLDAVEHPAPFGTIKR 895 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 ++ T + + + + N ++ P L+PS + Sbjct: 896 FSRWEWDAG----------PMATPAKEPAAKTVMPLFGDTLPNLLDRPKTLSPSDLGGAK 945 Query: 767 KTNLES-LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 E+ + + G IIH LL+V+ R + L+ Sbjct: 946 IMASETYTDASDLALAWGHIIHLLLEVLPETDPMMRLGTAEGLAKNHPDAGLIPNIGELI 1005 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 L+ ++ +EV +S + D + G ID++ I+ ++ ++K+ Sbjct: 1006 EEALGTLDASNLSWIFEAG-LAEVPISATLPSLGLDRMF-GIIDRLIITDTDVIAVDFKS 1063 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + VP+ E P Q++ Y LK YPN + +L++ +P L+ A Sbjct: 1064 NRVVPEIPEKTPLGLARQMAAYRDALKQIYPNHRIRTVLLWTKTGTTTELPDAMLDVALF 1123 Query: 946 EIST 949 ++T Sbjct: 1124 GVTT 1127 >gi|83953059|ref|ZP_00961781.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. NAS-14.1] gi|83842027|gb|EAP81195.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. NAS-14.1] Length = 1125 Score = 566 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 228/959 (23%), Positives = 394/959 (41%), Gaps = 68/959 (7%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 F + + + I ++ + + + + G K A+ L A+ Sbjct: 211 ALFDQPADLTEDKITTSVFLGSEAMI--LEQMIPPMRAKGGL-DGKAAEKL--ATIQTMD 265 Query: 63 EERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 +L LT + ++ T+ K DL ++ RD Sbjct: 266 ISALPVLEDVMLTGAGAKEPFTAKVGSLPTKPTQKLLFDLMPQVDDLMRRVEDARDARLA 325 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + T A Y K+K LDF+DLI+ LL V+AW+ Y+ID Sbjct: 326 LRAAQKTHVLHQFAHRFLEIYAHEKQKRGWLDFDDLILKARALLTNPAVAAWVLYRIDGG 385 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VI L ++F+ G RTLF VGD+KQSIYSF GA+P+ Sbjct: 386 IDHILVDEAQDTSPRQWDVIERLADEFYSGDGAREEEDRTLFVVGDKKQSIYSFQGADPR 445 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 ++ + +++ T AGQ F L SFRS++ IL +VD + +A Sbjct: 446 EFDHKQDLFEQKITQAGQIFQRRSLEYSFRSSSAILQLVDTTLAPHTDAGF-----QADA 500 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H++ + G V LW V + P W+ D +LA ++A I Sbjct: 501 AHKAFKSALPGRVDLWPVVEKTDE----PDDREWSDPVDQKSAHHHTVVLADQVASQIKE 556 Query: 356 MIGTDTIFSNGK-------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +I + +R I+A D L+LV++R D L + + R K + + G D Sbjct: 557 LIEGEHYLPVDTDTPGAFARRRIRAGDFLILVQRRSD--LFSEIIRACKT-ADVPIAGAD 613 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 R + LA+KDL AL F+ + ED LS LKSPLF ++E +F + R E +++ Sbjct: 614 RLKVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQMLFTLSHYRKED-HLWQ 672 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528 ++ + + + +L F P+D IL GR++ ++R G+E D Sbjct: 673 ALRS-----SDAYPETVAILRDLRAQVDFLRPYDLIERILTRHDGRRKLLARLGSEAEDG 727 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 ++ L+ L E+ + SL + ++ IKR ++VR+MTVH AKGLE+P+V Sbjct: 728 INAMLSQALSYERGAIPSLTGFLVWMQTDDLEIKRQIDNASDQVRVMTVHGAKGLEAPIV 787 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 L DTG + + I + P+W + + K E Sbjct: 788 ILPDTGKRP--------LVIRDEIIKIGDTPVWKLSEGDMPAAMRGALDDRKAREMAERL 839 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RLLYV MTRA LI+ E + +WY MV + Sbjct: 840 RLLYVAMTRAEKWLIVAAA----GELPKDGNSWYQMVGAAMGQAGAKPV----------- 884 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 + H + L +T + + +P+ N L PS + Sbjct: 885 GSSGGMRFEHGDWDALPVIDTAPKTHTTPVLEPVFNTPLTNIPLRAKTLAPSDLGGAKAL 944 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 + S++ + G ++HK+L+ + + + + + A+ + + L Sbjct: 945 PGDDGQSEDAAKSYGNLVHKMLETLPMMHSDRWNGVLHTL----AQGYDETVAQAALREA 1000 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +L+ + D+ +EV ++ + + G ID++ +S ++ + +YKT+ Sbjct: 1001 IAVLDTSELAHVFGKDALAEVPITAPLGTE----RLHGTIDRLLVSDTDVLLVDYKTNRV 1056 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 VP + P + Q+ Y L +P+ + +++ + +P + A + + Sbjct: 1057 VPDTPDRCPEGLLRQMGAYAAALAQVFPDHRIRTAILWTRTATLMELPDALITNALSRV 1115 >gi|299133347|ref|ZP_07026542.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2] gi|298593484|gb|EFI53684.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2] Length = 1163 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 258/956 (26%), Positives = 435/956 (45%), Gaps = 33/956 (3%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 G++ + + I +++ P+ + E G + + +A+ Sbjct: 228 RALGVTSDAQLDAIEREMVDGPHLPRRRWLAAAE-AFEQGGKSDATQGAR-LRAAAALSG 285 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 E + S F+T + +K ++T+ + L L + Q +++ ++ Sbjct: 286 EAQLDEYLSLFITGEGGARKTLMTKALAATQGALAAALMQEQPRLLQLDEQRRAVIQRDR 345 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T A L +A + AHY K+ +LD++DLI T+ +L ++W+ +K+D+ I+H+LI Sbjct: 346 THALLVIASAVAAHYRREKQARGLLDYDDLIDKTHTMLTG-GYASWVHFKLDRGIDHVLI 404 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDTS QW++I S +F G RT+FAVGDEKQSI+SF GA P+ +R Sbjct: 405 DEAQDTSPRQWDIIESFVSEFTAGAGARDIRRTVFAVGDEKQSIFSFQGAAPREFDLRRR 464 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 R +A F + SFRS A IL VD VF + + D + H + Sbjct: 465 AMMTRHAHAKLAFESVSFKHSFRSGAAILDSVDYVFREQAIYKSIHNDDAYPV-HDALPD 523 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V+LW + + E W + FD++ S LARR+ I +I T+ Sbjct: 524 AAPAMVELWNL----EEPDTREEIEGWDAPFDTISTTSPDVKLARRVTAEIKALIDAGTM 579 Query: 363 FSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 G +R ++ D++VLVR+R T + + LK I V G DR LT+H+A+ DL Sbjct: 580 TGTTGHRRKLRYGDVMVLVRRRGTT--FDAVIQALK-HAGIPVAGADRLKLTEHIAVIDL 636 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481 M L +L +DDL+ LKSPLF +DD+ I R T ++ +Q A + K Sbjct: 637 MHLADALLLPQDDLALAVALKSPLFGLDDDDLLAIAPAR--TGSLRAALQAHA-DTLPKL 693 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKG----RQQFISRFGNEVIDVLDEFLNFTL 537 + V ++ + +P FF +LG + G R + + R G E D LDEFL L Sbjct: 694 KSVNDFLMQCEKRFARVTPFAFFAWLLGGEGGGSGGRARILRRLGPEANDALDEFLELAL 753 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E+ + +SLQ I+ L +KR +EVR+MTVH AKGLE+ VVFLVDT + Sbjct: 754 SYERKAAASLQGFIAWLRAADTEVKRDMEILRDEVRVMTVHGAKGLEASVVFLVDTTTSP 813 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + +K + + + +W + V+ ++ T+ EY RLLYV MTR Sbjct: 814 SDTQRLKLIRMAHGNAGPGDVVLWAGAKRDDTEAVAQARAAMRDDTEHEYRRLLYVAMTR 873 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A+++LI+ N + +WYD++ D+ + L + + + T Sbjct: 874 AAERLIVGG-CKPGNRNNVRELSWYDLI------DKGLGASPLVMTEIETPFGPVRRYTR 926 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-- 775 + P E+ + +P L + +I + PS + + Sbjct: 927 AGDVEPKVAEDVAAKPAAPAPLPDWLRASAPLEIPRERSIAPSDASDDVSLPTLAPEAAL 986 Query: 776 -DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLLSITRLLE 833 + RG +H+LLQ + + +RK + ++A + + L + L+ Sbjct: 987 LRQRARLRGQWVHRLLQSLPDIAPDQRKAAAERFLARHAQDGFNQDDLNQLAQQVVDLIG 1046 Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 P + S +EVS++G+IN K +SG+ID++ I+ +I I +YKT P Sbjct: 1047 EPQFAALFAPGSRAEVSIAGRINIGNKIARVSGQIDRLVITPHDIIIVDYKTG---PAPR 1103 Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 P ++ QL++Y +L YP++++ L++ ++ +P L+ A + Sbjct: 1104 AETPPHYVRQLALYRAVLAKLYPDRTIRGALLWTETARMVEVPSATLDSGLAAALS 1159 >gi|319404939|emb|CBI78541.1| ATP-dependent nuclease subunit A [Bartonella sp. AR 15-3] Length = 1151 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 301/950 (31%), Positives = 485/950 (51%), Gaps = 47/950 (4%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + F L+ +E+ + + + I Y + + + Q + Sbjct: 219 RAFFNLAPDETNQQLLDKIQQTAALPSYAIKHYQTYNTSKNKH----IIEKFVQLATASD 274 Query: 62 IEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 E +L+S+ + + P+ + +++ ++ P ++++++ Q++ + + +++ K+ Sbjct: 275 EENIINLVSNIYFEKTGKPRNFSRLFSKKSDEIWPFVEKEIENKQNQLLILLEKYQCVKL 334 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 +A L Y + KK N LDF+DLI T +LL+ +D S W++YK+D+ I+H Sbjct: 335 ITLNMAVFQLCDIYLKIYADLKKANSFLDFDDLIERTLNLLQHKDASQWVQYKLDRGIDH 394 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 IL+DE QDT+ QW++I+ L ++FF G + ++ RT+FAVGDEKQSIYSF GA P+ Sbjct: 395 ILLDEAQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVPENFAE 454 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 R+ QK+A QKF I+L SFRSTADIL VD VF IPEN +GLS + T+ H Sbjct: 455 NGRMFQKKAQQIEQKFEKIQLNYSFRSTADILKSVDLVFEIPENYKGLSAEHVKTV-HEP 513 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 R G V +W+ + + N + W S D L + LA +IA TI+N + Sbjct: 514 IRTHSPGDVIIWDAIS----QKTNELPDDWLSTVDHL--NTPQIRLAEKIAETIANWLKN 567 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 I S K R+++A DI+VLVRKR + L+R LK + + V G DR LT H++++ Sbjct: 568 GEILSAKK-RLLRAGDIMVLVRKRDQ--FVPALSRALKLRH-VPVAGADRLQLTAHISVR 623 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DLMAL RF+L +DDLS C+LKSPLF SE++++++ T +++E + A+ Sbjct: 624 DLMALARFVLQPQDDLSLACVLKSPLFALSENELYQL--AAQRTGSLWESLWTHASSHT- 680 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 F+ + ++ + +F++ IL KGRQ+ ++R G E +VLD F++ TL Sbjct: 681 SFKTIFDRLNTYRSLVDKMPVFEFYSYILNNDKGRQKILARLGTEANEVLDAFMDHTLAI 740 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++ LQ + L P IKR N EVRIMTVH AKGLE VVFLVD GS ++ Sbjct: 741 QKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAVVFLVDPGSAIWH 800 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 ++ + + D IW P ++ L+ LK+ +EEY RLLYVGMTRA Sbjct: 801 PQYAP--YFLKFSLGDKQAFIWRPNAQHHTKHFDKLLSRLKERAEEEYKRLLYVGMTRAE 858 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 D+LIIC +SN K TW +V + K ++ A+ + Sbjct: 859 DRLIICGYSNQ----KETPNTWLQLVKKALKPHAVPIK------GPAEDIAAWRYCITSS 908 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID--------------TK 765 +TP +E + +P + + L PS D + Sbjct: 909 CSTPTYKEMPCETHQAFPPLPAFFHDKMPTESTLSKPLRPSVADIIDTKTKFSNNKHFSL 968 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 E + G IH+LLQ + LP KR ++ Y A W + +N L Sbjct: 969 SPVLGEKNTKRTFSIEYGNFIHQLLQHLPDLPPIKRHDYAQFYLNTKASHWHKSQRENAL 1028 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 I +L+NP + S S++EV++ G + K+ ++SG+ID++ I+ ++F ++KT Sbjct: 1029 HHIWTILDNPQLIPLFSSLSHAEVALIGIVKINGKEQMVSGQIDRLCITHNSVFFADFKT 1088 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 P+ I H+ Q+++Y+K+L+ YPNK++ LLIY+ + K+F + Sbjct: 1089 G-LPPKNDTDIAQRHLLQMALYQKLLQAIYPNKNMQALLIYIKKAKIFKL 1137 >gi|304392405|ref|ZP_07374346.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130] gi|303295509|gb|EFL89868.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130] Length = 1195 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 278/979 (28%), Positives = 460/979 (46%), Gaps = 52/979 (5%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G +++E+ + F + + + + +TG +K A + T E Sbjct: 235 GFAVDETVTSLRNGAVAASLFAMEEWTALSAEARDTGAANAIKLADRIDLFLHTVEDERY 294 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 + L+ K + + + + PD + QD I + T T Sbjct: 295 DAYLAVLQTGGKPRKFSSFVPKAMQGLLPDFANRFDAEQDRLIAAAAQEATLSAIHRTAP 354 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 LT + + A YE +K++ LDF+DLI DLL + D AW+ YK+D I+H+L+DE Sbjct: 355 FLTFIQAIAARYERSKRQVGALDFDDLIARAADLLTRADARAWVLYKLDLGIDHVLVDEA 414 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDTS QW+VI +L E+FF G+ ++ RT+FAVGDEKQSIYSF GA P+ +R+ + Sbjct: 415 QDTSPRQWQVISALVEEFFAGQGARNTNRTVFAVGDEKQSIYSFQGARPESFDTHRRLFE 474 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + + NAG F L LSFRSTAD+L VD VF +P+N G+++ T H ++R Sbjct: 475 RASKNAGGTFENANLNLSFRSTADVLDAVDAVFKVPQNMPGVTQGEGTI--HDAARSKGA 532 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 G V +W + ++ + E WTS +++ LA ++A TI + IG + + N Sbjct: 533 GQVDVWPLIS----AEKAEESEDWTSQ--QEATIAASEKLALQVAGTIKSWIGNEPLGPN 586 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 G R +QA DILVLVR R ++ V G+DR +TDH+A++DLMAL Sbjct: 587 G--RAMQAGDILVLVRSRD---AFVTALNRELKSLEVEVAGSDRLTITDHIAVEDLMALA 641 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FAN 475 + +L+ +DDL+ +LKSPL EDD++K+ R E + + + Sbjct: 642 QVMLTPQDDLALAGLLKSPLIGLDEDDLYKLARSRMEGAVMRDRSVREHNVSLFQGLRDQ 701 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535 KF I A ++FF LILGA GR++F++R G EV DVLD F + Sbjct: 702 LDEPKFAAAWNTIKGWRRRADILPVYEFFALILGADGGRRKFMARLGPEVEDVLDAFASA 761 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 T+ +E LQ + L P IKR +VRIMTVH AKG+E+PVVF+VD S Sbjct: 762 TMDHESRGLPGLQNFLERLSTEQPEIKRELDQRGEQVRIMTVHAAKGMEAPVVFVVDKSS 821 Query: 596 QVFSHKHIKKMHIMPSLNDDP---GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 + + ++ G +W+P++ + + + EY RLLY Sbjct: 822 KALPGQFYPALYRWGDQESADNRNGGWLWVPKTNQHGTATTPAFEREHTGAENEYRRLLY 881 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V MTRA D+LI+C S K + +WY+M+ + + Sbjct: 882 VAMTRAEDRLILCGTCGVSGPDKVPEPSWYNMLERGLEGTW-----RDVEAQGAVPQHHR 936 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 +S E +T KQ++D +P + P++ + P L+PS Sbjct: 937 WYSHDRAEREGDNPAQTDKQVVDVTPLPATMLQPMERAKDLPKPLSPSGATALIDEGRTE 996 Query: 773 LL----------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 S G +H++ ++ + ++ R + Sbjct: 997 PRAVPSLLEPDAPSAAAYSSPSPRKLGTAVHRIFELWPVVAQNDRMPMGERILDQQLGNL 1056 Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875 N++ + +++E+P + S +EV+V G ++ ++G ID++++++ Sbjct: 1057 DPAMSANIIYGVQQVVEDPRVADLFDPATSRAEVAVMGVLDIGGTQRSVTGTIDRMAVTE 1116 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS----EPK 931 +++ ++KT HVP + P +++ QL++Y I++ YP+KS+ LI+ + E + Sbjct: 1117 DAVYLLDFKTGEHVPADAAAAPASYVTQLALYRAIVQRLYPDKSVYATLIWTAAQDVERR 1176 Query: 932 VFIIPQNKLNKAFAEISTK 950 + +P L++A AE+S + Sbjct: 1177 IMTLPSAMLDEAMAELSQR 1195 >gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040] gi|99038966|gb|ABF65578.1| ATP-dependent nuclease subunit A [Ruegeria sp. TM1040] Length = 1121 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 239/954 (25%), Positives = 407/954 (42%), Gaps = 69/954 (7%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 F L + +++ +I +++G T K A L + + + Sbjct: 211 FDLPAGYDRSALQAEVFLGNE---EEILSRTIEMLKSGGATDTKNADKLARITAVTP--D 265 Query: 65 RFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 LL FLT K + T+++ + + L ++L+ R + Sbjct: 266 VLPLLEDVFLTGKSAKDPFSAKIGSFPTKKLRESNGVLMDQLEPFMARVEAARPKRLALD 325 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + ++ A+ YE K+ LDF+DLI+ +LL V+AW+ Y++D I+ Sbjct: 326 AMEKSIVLHDFARVFLPEYERRKQLRGWLDFDDLIVKARNLLNDPAVAAWVLYRLDGGID 385 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDTS +QW+V+ L ++F G+ + RT+F VGD+KQSIYSF GA+P Sbjct: 386 HILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADVERTIFVVGDKKQSIYSFQGADPDAF 445 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 R + R + G+ L SFRS+A IL +VD VF E+ G ++D+ +H Sbjct: 446 DRMQAEFGNRLKDTGEGLQNASLAFSFRSSAAILGLVDVVFD-GEHRAGFADDA----KH 500 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 ++ + G V LW V + + ++ WT D + ILA RIA I MI Sbjct: 501 QAFKSDLPGRVDLWPLV----EKTDDEEERDWTDPVDRPSPRHHSVILAERIANHIKEMI 556 Query: 358 GTDTIFSNG-------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 ++R + A D L+LV++R D L + + R K + + G DR Sbjct: 557 AQGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSD--LFSEIIRACKA-AGLPIAGADRL 613 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 + LA+KD+ AL RF+ ED LS LKSP+F +SE +F + +R E ++ Sbjct: 614 KVGAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLFDLAHRRSE-----MHL 668 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 +F ++ +++L A F P+D IL GR + + R G E D ++ Sbjct: 669 WPALRARSEEFPQTMEILNDLRRQADFLRPYDLIERILTRHLGRAKILGRLGTEAEDGIN 728 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 L+ L E+ SL + ++ IKR A + +R+M+VH +KGLE+P+V L Sbjct: 729 ALLSQALAYERTEVPSLTGFLVWMQTDDLEIKRQMGAASSMIRVMSVHGSKGLEAPIVIL 788 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 DT ++ + + G P+W S + ++ E RL Sbjct: 789 PDTTK--------RRPSPAAEVMEVDGTPLWRMSSDQMPPAMDAARVFAQEKQANERLRL 840 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV +TRA LI+ + +WY V + + + Sbjct: 841 LYVALTRAEKWLIVAGAGDLDKGGD----SWYQRVEAAMKTMGALPYDAPGGEGLRWAHG 896 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-TIDTKGKTN 769 +E P + E DE +P+ + L PS + Sbjct: 897 DWEAPVFVPSDLTEE---------DEITLPEVFRRAAPAYVAPAATLRPSEDLGGAKALP 947 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 +S LS+ RG +H LL+ + LPE N + +++K LL Sbjct: 948 GDSGLSEEDAKARGTALHLLLEHLPKLPEEDWDNRAEAIAQH-------EDWKALLAEAR 1000 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 ++L + + + +EV VS + + + G ID++ I+ + ++K++ V Sbjct: 1001 QVLCSDDCADIFAPGTLAEVPVSADL----GTVRLHGIIDRLVITPDRVLAVDFKSNAVV 1056 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 PQ E P + Q+ Y+ L+ YP++ + +++ + +P + +A Sbjct: 1057 PQSAEACPEGLLRQMGAYDVALRQIYPDRQIETAILWTRTATLMSLPVTLITQA 1110 >gi|254463307|ref|ZP_05076723.1| double-strand break repair helicase AddA [Rhodobacterales bacterium HTCC2083] gi|206679896|gb|EDZ44383.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium HTCC2083] Length = 1122 Score = 563 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 242/950 (25%), Positives = 395/950 (41%), Gaps = 55/950 (5%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 + L S E I ++ +D+ + + T + T +K A L T Sbjct: 210 AAYDLDPLMSEEQIAASVFMGGE---ADLLSALVNVLNTSSVTDVKMAAKLTTI--TALD 264 Query: 63 EERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 +L FL +K K I + + K ++ L R Sbjct: 265 ASALPILEDAFLLKKDGSAKVGKIPAKGVQKDFVAYQDALDAWIFRVEAARGSRLKLAAV 324 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + TL A YE +K+ LDF+DLI+ T DLL +++ W+ YK+D I+HI Sbjct: 325 QKTLHLNRFAAAFLTRYEASKQARGWLDFDDLILKTRDLLANSEMAQWVLYKLDGGIDHI 384 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 L+DE QDTS QW+VI LT + G PRT+F VGD+KQSIYSF GA+P+ R Sbjct: 385 LVDEAQDTSPTQWDVIERLTSEITAGDGARGEVPRTIFVVGDKKQSIYSFQGADPREFDR 444 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + R EL SFRS+ IL +VDKVF A + H + Sbjct: 445 MRSEFDVRLRPTNSPLVPAELHYSFRSSQCILELVDKVFEDHPTAG------FSGSNHLA 498 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG- 358 G G V +W + W+ D L + ++A RIA I+ M G Sbjct: 499 FEGGPPGRVDIWPAIPKAEKLDGG----DWSDTVDKLGENDETVLMAHRIADEIARMTGP 554 Query: 359 -TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + +F G R ++A D+L+LV++R D L + R K + + G DR + +A Sbjct: 555 MGEALFDKGIFRKVRAGDVLILVQRRSD--LFEEIIRACKTK-GLPIAGADRLKVGAEMA 611 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 ++DL AL F+ + EDD S +LKSPLF +SE +F + R E + Sbjct: 612 VRDLQALLSFLATPEDDYSLAVVLKSPLFGWSEKRLFDLAHDRSGRFLWQELRSRKNMH- 670 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 V+ + +L A F P+D +L GR+ F+ R G E D +D L L Sbjct: 671 ----SDVLHILEDLRKQADFLRPYDLIERVLTRHNGRRHFVGRLGREAEDGIDALLAQAL 726 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E++ SL ++ +E TIKR S + +E+R+MTVH AKGLE+P+V + +T + Sbjct: 727 SFERSRIPSLTGFLTWMESDDLTIKRQLSQDRDEIRVMTVHGAKGLEAPIVIMPETQKRK 786 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 SL + W +++ +I+ ++ EE RLLYV MTR Sbjct: 787 SPGG--------GSLIKMDDLVGWSVRNEDAPDIIKTAKAQREERQAEERMRLLYVAMTR 838 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A LI+ + +WY +V + V+ + E + + Sbjct: 839 AEKWLILGAAGDLGKTDD---ESWYGLVSAAARERPHVEYDFAFGKGLRIEPVPWGDVEE 895 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 P+ PL + ++ I + ++PS + E+ L + Sbjct: 896 TPKQAPLAQS---------IELDPLFREAISITVPSETTISPSNLGGAKALPSETGLDEE 946 Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837 RG +H LL+ P K + +L++ T+++ P + Sbjct: 947 AAKMRGTQVHLLLEHFSQTPVDKWDTIAEALL------PDTPYLNDLIVEATKVITAPNL 1000 Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897 + + SEV ++ + + I G ID++ ++ +++ ++KT+ VP P Sbjct: 1001 SFIFDHGTMSEVPITATLP-NLSNKPIHGIIDRLIVNDTDVWAIDFKTNTAVPAGAGLCP 1059 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 + Q+ Y L+ YP + +I+ + +P + ++ A Sbjct: 1060 EGLLRQMGAYRSALRQVYPTHHIRTAIIWTRNASLMELPASHVDAAMRRA 1109 >gi|90420586|ref|ZP_01228493.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans SI85-9A1] gi|90335314|gb|EAS49067.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans SI85-9A1] Length = 1209 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 301/972 (30%), Positives = 469/972 (48%), Gaps = 35/972 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L++ GL E I P F + + +SL+ + PT +K LQ Sbjct: 229 LRHALGLQPGEDEAAIVAAADDAPSFDAAFCDSAMSLAAASSKPTDVKFRDRLQALRDAG 288 Query: 61 CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + R + L + LT K TP K ++ T+ + PD E+L++ D I +R + + Sbjct: 289 TPDARLAALKALCLTAKGTPYKPSSVATKAVADALPDFPERLQQLADHVQAIDERLASLR 348 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 +F+++ A+L +A Y K++ LDFEDLI+ T +LL + SAW+ YK+DQ I+ Sbjct: 349 LFRASAAALVIADAFERDYAILKRRRGRLDFEDLIVRTAELLTRSAASAWVHYKLDQGID 408 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 H+LIDE QDTS QW+V+R L E+FF G RT+FAVGDEKQSIYSF GA P+ Sbjct: 409 HVLIDEAQDTSPRQWQVMRQLVEEFFAGAGAREVTRTVFAVGDEKQSIYSFQGASPRMFA 468 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 E+R +KRA A +F + L SFR+ AD+L VD VF+ EN +GLS H+ Sbjct: 469 DEQRAMRKRAEAAEARFEEVRLTQSFRTAADVLRAVDTVFADAENRKGLSSGDEPP-AHQ 527 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 ++R G V++W ++ PQ W D P S A+ LARRIA I + IG Sbjct: 528 TARGEAPGLVEIWPVY----QAEEQPQSRDWLQAIDYEPANSPANRLARRIAAQIGDWIG 583 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 I G R + A D++VLVRKR D I V G DR ++TDH+A+ Sbjct: 584 D-PIAHKGAVRPLAAGDVIVLVRKRSG---FVAAMAKALRDAGIPVAGADRLVITDHIAV 639 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA---- 474 KDLMALGR + + EDDLSF +LKSP F+F++DD+ + R E + +++ Sbjct: 640 KDLMALGRTVANFEDDLSFAAVLKSPFFDFTDDDLMGLALSRERHEPLSLGLRRICGPEG 699 Query: 475 -------------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 ++K ++ + + EL + F + F+ ILG + GR + R Sbjct: 700 LARVPEFVPDETTEAFLAKCRYALTRLDELRARSGFETIFAFYARILGPEGGRARLTRRL 759 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581 G++ +V+D FL+ L +E L ++ L PP+IKR EVRIMT H +K Sbjct: 760 GSDSGEVIDAFLDLALADEDAGEPGLDAFLARLAAAPPSIKREMEQGRGEVRIMTTHASK 819 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPS----LNDDPGIPIWIPQSKSRNNIVSDLIK 637 GLE+PVVFLVD GS FSH H ++ P + +W N+ ++ L + Sbjct: 820 GLEAPVVFLVDPGSAPFSHAHGSRLMEWPDMPGLVPGMSPGFLWRAAKDLENDAIAALKE 879 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 K +EEY RLLYVGMTRA+D+L++C S +++ + + Sbjct: 880 AEKARAEEEYRRLLYVGMTRAADRLVVCGVSGVRGPNENSWLQRAQLALSAECEPVIDAD 939 Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK---NDINEP 754 + + P + L E P+ L +I E Sbjct: 940 GATIAWRFGAAGTGDKLAAAIPSQPDAPAPLDLSPLPPEILPPRPLSPSSAGEGTEIAED 999 Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814 + P L + RGL +HKLLQV+ + R+ Y A Sbjct: 1000 DAIPPEAAQAFVSPVLSQTGDPSFAIRRGLAVHKLLQVLPEMAADAREAAARRYLATAAP 1059 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874 A ++ L+ S ++++P + S +EV V+G+I + ++G ID+++++ Sbjct: 1060 EMRAGDHDALVASALAVMDDPGFAAIFAAGSRAEVPVAGEITLAGRSYRVNGTIDRLAVT 1119 Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 + I +YKT+ P + + +I QL++Y ++LK YP++ + L++ P++ Sbjct: 1120 TTRVLIVDYKTNRPPPASLAEVSPAYIMQLALYREMLKPLYPDRPIEAALLFTEAPRLIA 1179 Query: 935 IPQNKLNKAFAE 946 + + + +A A Sbjct: 1180 LSEAVMEQAVAR 1191 >gi|159045978|ref|YP_001534772.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL 12] gi|157913738|gb|ABV95171.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL 12] Length = 1125 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 225/957 (23%), Positives = 383/957 (40%), Gaps = 57/957 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 ++ GL+ +S + + + V+ + TG+ T K A LQ+ + Sbjct: 211 IEKTLGLAPGDSITALSDRTFQAKDRD---LIGRVAKACATGSSTDAKAAAKLQELADRA 267 Query: 61 CIEERFSLLSSFFLTQKFTPQ-------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 F +L L T+ L + R Sbjct: 268 PDTTWFEVLEGLLLYGATAKAGPFAPKTDAFPTKATRTALGADMGALNDLMCRVAEARQP 327 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 ++ T A Y+ K LDF+DLI+ LL V+ W+ +++ Sbjct: 328 RLALEIAAQTRIVHNFANVFLKAYQAGKDARGWLDFDDLILRAKTLLTDPGVAQWVLFRL 387 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGA 232 D I+H+L+DE QDTS +QW+VIR LT +F G+ ++ RT+F VGD+KQSIYSF GA Sbjct: 388 DGGIDHMLVDEAQDTSPVQWDVIRLLTREFTAGQGARTNVLRTIFVVGDQKQSIYSFQGA 447 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P R ++ G L SFRS+ +L VD+ FS ++ Sbjct: 448 DPAGFDRMRQHFGTELAQVGTPLQERLLLFSFRSSRAVLRHVDETFSRFQHQG-----LG 502 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 H + G V LW + +WT D + + +LAR+IA Sbjct: 503 GGSEHIAFHEALPGRVDLWPALAKAEKQTPQ----NWTDPVDKIAADDPRHVLARKIAAE 558 Query: 353 ISNMIGTDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I ++ + T + G+ R I D LVLV+KR + + L R K + + + G+DR Sbjct: 559 IRRLLESGTQITSAKGETRPITPGDFLVLVQKRSE--IFHELIRACKTER-LPIAGSDRL 615 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 + LA++DLMAL F + ED ++ C+L+SPL +++ ++ + Q + ++ + Sbjct: 616 RVGAELAVQDLMALLAFAATPEDSMALACVLRSPLCGWTQRELHVL-AQPNRNRFLWAAL 674 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 + ++ ++ A F P+D +L GR++ I+R G E + +D Sbjct: 675 RD-----SDAHGETRAFLQDVRDQADFLRPYDLLERVLTRHGGRERLIARLGEEAEEGID 729 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 L+ L+ EQ SL ++ Q +IKR A +E+R+MTVH AKGLE+P+V + Sbjct: 730 VLLDQALQYEQTEIPSLSGFVAWFRQDDMSIKRQIDARRDEIRVMTVHGAKGLEAPIVIM 789 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 D ++ K + + + G +W ++R ++ + + EE RL Sbjct: 790 PDCAKPSNTNTRSKLLPL------EDGPLVWAGNKETRPEVIKPRAEEIALRDTEERMRL 843 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV MTRA LI+ T S + + + + Sbjct: 844 LYVAMTRAESWLIVAAAGETGTGTDSWHAMVTEGIE------AQTPHEVEFPTGTGLRLE 897 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-KTN 769 W P PL + +Q PS + N Sbjct: 898 HGVWPPDAPSPMPLHTAHSPQQPAFAPM---------PPMPERRNTRAPSDLGGAKVIEN 948 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 L + RG IH LL+ + P + + +LL Sbjct: 949 AIEGLDKDAAQRRGKQIHLLLEHLPDHPPESWASLAPRLL---GAEDNPETVADLLAEAR 1005 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 +LENP + + D+ +EVS++ + I+ G +D++ I + I ++K++ V Sbjct: 1006 GVLENPALEPLFAPDTLAEVSLTAPLPGLNGAQIL-GTVDRLIIGPERIVAVDFKSNQAV 1064 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 P E P + Q+ Y + L YP+ S+ +++ + +P + A Sbjct: 1065 PAHPEDTPEGLLRQMGAYAEALAAIYPDMSIETAILWTRTATLMPLPHGLVIAALQR 1121 >gi|300023817|ref|YP_003756428.1| double-strand break repair helicase AddA [Hyphomicrobium denitrificans ATCC 51888] gi|299525638|gb|ADJ24107.1| double-strand break repair helicase AddA [Hyphomicrobium denitrificans ATCC 51888] Length = 1196 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 261/962 (27%), Positives = 440/962 (45%), Gaps = 30/962 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ G+ + ++++ Y + ++ + TG + TLQ A+ Sbjct: 239 LRQSLGVRAAIAVRELHEE---CAYVLSESDLRELTEHLATGKASDTGHVPTLQSAAGLT 295 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 RF LS +FLT P+K ++T+ + P L ++ +Q + + Sbjct: 296 DAPRRFEALSGYFLTATGEPRKTLMTKALASSKPGLNDRCLAAQQRLFALSKELKALSLV 355 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINH 179 +S++A +A + Y EA++ LDF DLI+ T LL+ + W+ +K+D ++H Sbjct: 356 ESSMALYVVAGIILHRYTEARRSAGALDFADLILKTKSLLEGDGGQAQWVLFKLDGGLDH 415 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVL 238 IL+DE QDTS QW+++++L +FF+G T PRT+FAVGDEKQSIYSF GA+PK Sbjct: 416 ILVDEAQDTSPEQWDIVKALAHEFFMGAATRDGSPRTVFAVGDEKQSIYSFQGADPKMFA 475 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 A +AG + IEL +SFR+ +L VD VF+ GL+ +H Sbjct: 476 DAGIRFAALARDAGLIWKSIELTMSFRTVTPVLAAVDAVFADAAKTPGLTAGG-PPPKHN 534 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R+G G V++W + +P + + S A+ LA RIA TI + Sbjct: 535 AIRLGHAGLVEMWPTEKPDDLNAADP-----WAPLSDTSEHSPANRLAERIADTIKGWLD 589 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + + R I+A DIL+LVRKR I+V G+DR LTD +A+ Sbjct: 590 RGERLES-QGREIRAGDILILVRKRN---PFAVPMVAALKRRGIAVAGSDRIALTDQIAV 645 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALG F++ EDDL+ +LK P+F F +DD+ I R ++T++ + + Sbjct: 646 QDLMALGDFLILPEDDLALAAVLKGPIFGFDDDDLLAIAPGRK-SKTLWSALLD-STGVK 703 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 +++ + + A F P +FF+ +L R++ + R G E DV+DEFL+ L Sbjct: 704 PEYRDAAETLKRWRAKADFTPPFEFFSSVLDRDGAREKMLRRLGPEAADVIDEFLDLALS 763 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT---GS 595 + + SL + ++EL P +KR +EVR+MTVH AKGLE+P+VFL DT S Sbjct: 764 YDDGTPPSLTQFLAELRAIAPEVKRDMDHGRDEVRVMTVHGAKGLEAPIVFLPDTCTTAS 823 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 S + ++ +P + P +W + SR V+ + + EE NRLLYV M Sbjct: 824 GDLSAASLVRLSGLPRPDHIPEPIVWTVKGTSRLEAVTIARRGREAREHEERNRLLYVAM 883 Query: 656 TRASDQLIICKHSNTSNEKKSNQRT--WYDMVYDSFHNDERVKKIKLTNSINKDE----W 709 TRA D+L I +S ++ + D+ KK+ + E Sbjct: 884 TRARDRLYIAGFEGKKGRAESCWYDAISEALLPVAEEIDDNGKKVWRIETAQTAELDQSR 943 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP-STIDTKGKT 768 E E + + P D I++ + Sbjct: 944 GEKTRQLESEERPAFASERARPEPKLSVPLAPSRLEPYAPDAEGEPIMSAKADAAATYDA 1003 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 + F RG + H LLQ + ++ R+ T++ K + K ++ Sbjct: 1004 PSPLAGNSEHRFLRGTLTHALLQHLPSVAASGREAIATAFVAKRGAVLSRKARDGIVRET 1063 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII---ISGRIDQISISQQNIFIFEYKT 885 +L + +S +EV ++ I P +SG+ID+++++ + I +YKT Sbjct: 1064 LAILSSADFAPLFGPNSMAEVPIAAVIPRPSGSGPALDLSGQIDRLAVTDDEVLIVDYKT 1123 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + P E+ + ++ QL+ Y L + YP + + L++ P++ +P + L+ + Sbjct: 1124 NRPPPSEVRFVAPAYLYQLAAYRLALGEIYPGRRVKAALLWTDGPRLMEVPADVLDGYQS 1183 Query: 946 EI 947 + Sbjct: 1184 RL 1185 >gi|260429599|ref|ZP_05783576.1| double-strand break repair helicase AddA [Citreicella sp. SE45] gi|260420222|gb|EEX13475.1| double-strand break repair helicase AddA [Citreicella sp. SE45] Length = 1118 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 238/946 (25%), Positives = 396/946 (41%), Gaps = 49/946 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 ++ + L +E E + ++ + + ++ G T A L + Sbjct: 206 VRALYDLGPDEDAESLLSSVFLGSE---TALIADALPVLKAGKSTDQGCADKLAAFTGRN 262 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + L + LTQK T + T++ + E+L++ + R+ + Sbjct: 263 L--DSLVALEAALLTQKGTRSSRVPTKDTRAALGPMAERLEQLAERVEAARETRLALEAV 320 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + LA A+ YE K++ LDF+DL+ DLL V+ W+ Y++D I+HI Sbjct: 321 QRELALHRFAQAFLPAYETEKQRRGWLDFDDLVTRARDLLSDERVAEWVLYRLDGGIDHI 380 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 L+DE QDTS +QW+VI L +F G+ S RT+F VGD+KQSIYSF GA+P+ R Sbjct: 381 LVDEAQDTSPVQWQVIERLAHEFTSGEGARSDVRRTIFVVGDKKQSIYSFQGADPREFDR 440 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 +R S + L SFRS IL +VD F E + + RHR+ Sbjct: 441 MCDEFAERLQRTEAPLSRMMLEYSFRSAEPILRLVDNCFEGREASGFSEDQ-----RHRA 495 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + G V LW V + DS + + W D + ++ A ILA R+A I IGT Sbjct: 496 FKSAMPGRVDLWPHVETNKDSAEDGE---WFEPVDRVGEQHHAVILANRVAGFIGRTIGT 552 Query: 360 DTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 G R A D L+LVR R L + + R K + + G DR + Sbjct: 553 PLPEEIGHSGEYRTRPAHAGDFLILVRGR--GTLFSEIIRACKQR-GLPIAGADRLKVMS 609 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA+KD+ AL F+ + EDDLS L+SPLF E D+F + R Y+ Sbjct: 610 ELAVKDIGALLAFLATPEDDLSLATALRSPLFGLGEQDLFTLAHPRK------GYLWAEL 663 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + V+ + +L F P+D IL GR + + R G E D ++ L Sbjct: 664 RKNRDTYPQVMAVLDDLRSETDFLRPYDLIERILTRHGGRARLLGRLGEEAEDGINALLG 723 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L EQ SL + ++ IKRA + + +R+MTVH AKGLE+P+V L D Sbjct: 724 QALAYEQTEVPSLTGFLEWMQTDDLEIKRAPDSAGSRIRVMTVHGAKGLEAPIVILPDCA 783 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 I SL D +W + ++ + ++ ++ K++ Q+E +RLLYV Sbjct: 784 --------RPNTQIRESLLDGATGTVWKAGADTQPRVQTEALEAAKEADQQERDRLLYVA 835 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +TRA L++ + WYD V + E + Sbjct: 836 LTRAEKWLVVAAAGELGKDG----NAWYDKVKIGMERSGAEAAVFDYGDWGSGEGLRLGL 891 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 + + + Q+ +P P ++PS + E Sbjct: 892 ADWTGLPHVTVPPKEVAQV----TLPDLFRQRAVVPEPAPGAVSPSGLGGAKALGGEDGD 947 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 + RG +H LL+ + LP +R + + +L E +L+ +L Sbjct: 948 ETEEAMLRGTALHLLLEHLSALPADRRADAVPHVLAIAEEL--PAETDSLVQEALAVLAT 1005 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + + ++ +EV +S +I I G ID++ ++ + + ++K++ VP E Sbjct: 1006 LPLAPFFAPETLAEVPISAEIAPVG---RIHGIIDRLIVTPEKVIAVDFKSNRTVPATPE 1062 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 P + Q+ Y L+ +P++ + L++ + +P + + Sbjct: 1063 QTPEGLLRQMGAYAAALQQIWPDRCIETGLLWTATQSYMALPHDLV 1108 >gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2150] gi|126705709|gb|EBA04799.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2150] Length = 1122 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 240/950 (25%), Positives = 407/950 (42%), Gaps = 61/950 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L F L N + + ++ +D+ + ++ G+ +K + L + Sbjct: 222 LTAAFDLPTNFQISDLLERVFLGSE---ADLLTNLLGVLKAGSANDVKASINLAPLAPFS 278 Query: 61 CIEERFSLLSSFFLTQKFT-----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115 L S FL + T+ ++++ RD Sbjct: 279 PSLSLLIKLESLFLNKSGANAGFAKIGKFPTKASQTALGSDIDQIENLMKRVESARDARL 338 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + + + T A T A+ +E K + LDF+DLI+ LL VS+WI +++D Sbjct: 339 SLQALEKTRALTTFARAFLPKFEHKKLTHGWLDFDDLILKARQLLTDPAVSSWILFRLDG 398 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEP 234 I+HIL+DE QDTS +QW+V+R L ++F G+ + RTLF VGD+KQSIYSF GA+P Sbjct: 399 GIDHILVDEAQDTSPVQWDVVRLLAQEFTSGEGARADTQRTLFVVGDKKQSIYSFQGADP 458 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 K ++ G+K +L SFRS+A IL +VD V +A + + Sbjct: 459 AAFDNMKHHFSDALSHIGEKIHDRKLLFSFRSSAPILRLVDTVCGNNPDAGFIQD----- 513 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 + HR+ G V + V WT D LP ++ +LA +IA I Sbjct: 514 LNHRAFHDDLPGRVDICAVVEKPEALPDQ----DWTDSVDRLPPQNELVVLASQIAEQIQ 569 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 +MIGT + G+ R I A D L+LV++R + L + R K ++ + G DR + Sbjct: 570 SMIGTAITNAKGQTRAITAGDFLILVQRR--SALFHEIIRACKA-AQLPLAGADRLKIGG 626 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA+KDL AL RF+ ED LS +LKSPLF +SE DI+ + R + E Sbjct: 627 ELAVKDLGALLRFLDLNEDSLSLAAVLKSPLFGWSEQDIYSLAQGREQKYLWAE-----L 681 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 K+ + +++L A F P + +L GR+ I+R G+E + +D LN Sbjct: 682 RDNAEKYPETVNVLNDLRKNADFLRPFELMERVLTRHGGRRALIARLGHEAEEGIDALLN 741 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L EQN SL IS ++ +KR + +++R+MTVH AKGLE+P+V L DTG Sbjct: 742 QALVYEQNETPSLAGFISWVDSGEIEVKRQIDSASDQIRVMTVHGAKGLEAPIVILPDTG 801 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 S+ K GI W + ++V + ++E RLLYV Sbjct: 802 SRRNDLKSNLLPI-------ADGIVSWKTLKEDAPSVVKTAREEALTRREDEGQRLLYVA 854 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA LI+ ++ +WY + V+ + + +W Sbjct: 855 MTRAEQWLIVYAAGKVDDK------SWYSQIERGMQGAGAVQG-PIGLRLESGDWTKTAH 907 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 + +P+ ++PS + + L Sbjct: 908 DIEIKTDVA-------------HTLPEWATISAPAKARPKPPVSPSKLGGSKALAGDGGL 954 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 ++ RG +IHK+L+V+ P+ + + + +++ + +L + Sbjct: 955 DEDAAMARGDVIHKMLEVLPLSPKEEWASLAEKILA-------DAPFPDVIDEVLFVLND 1007 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 P + + ++ +EV+++ + I+ G+ID++ I I + ++K++H + + Sbjct: 1008 PDLAHVFAANTLTEVNITATLPELSDSQIL-GQIDRLIIEPDKITLIDFKSNHTPAKTVN 1066 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 +P + QL Y L YPN+ + +++ + IP + A Sbjct: 1067 QVPDGLLRQLGAYAAALAQIYPNREIQPAILWTKNAYLQHIPHEVVRNAL 1116 >gi|163797153|ref|ZP_02191108.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199] gi|159177669|gb|EDP62222.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199] Length = 1152 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 249/952 (26%), Positives = 416/952 (43%), Gaps = 41/952 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + R G+ S + + + + + G+ T +++ TL Sbjct: 225 VHARLGVEPGSSDLDLLWAASADAALDGTGLRRACE-VLGHGSKTDVERGGTLADWLALG 283 Query: 61 CIEER---FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 + R + FLT + P+K + T+ P + L + I + Sbjct: 284 EPDRRAAAWEAYRGVFLTAEGQPRKTLATKAALAFDPAAGDTLLAEAERLSVIEETRRAR 343 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 + T+A +TLA + YE AK + LD+EDL+ LL + V+AW+ +K+D + Sbjct: 344 ATAERTVALVTLAASVIDAYETAKGRRAELDYEDLVERARSLLHRPGVAAWVLFKLDGGL 403 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-----RTLFAVGDEKQSIYSFHGA 232 +HILIDE QDTS QW+++R+L E+FF G H + R++FAVGD KQSIYSF GA Sbjct: 404 DHILIDEAQDTSPAQWDIVRALAEEFFAGSGAHDARHPTVERSIFAVGDVKQSIYSFQGA 463 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--------- 283 +P + R A + F + L SFRST +L VD VF+ P+ Sbjct: 464 DPAGFGTARAHFATRVAEAEKLFRRVPLEQSFRSTDAVLQAVDAVFAQPDAQDGVAEVDS 523 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A G I H + R G G V++W + Q + E W + + + Sbjct: 524 AGGKVPIEPVPIVHSAVRAGHAGRVEVWPLLEPQDE----EIGEMWAPPIERRSTDEPRA 579 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 LA RIA I I + R I+ D++VLV++R ++ Sbjct: 580 RLATRIATRIKGWIAAGEPLP-ARGRPIRPGDVMVLVQRRG---PFVHELVAALKKAEVP 635 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 V G DR +LTD +A+ DL+A+G+ +L EDDL+ +LK PL SED+++ +C R E Sbjct: 636 VAGVDRLMLTDQMAVMDLVAVGQTVLLPEDDLTLATVLKGPLVGLSEDELYHLCQGRREK 695 Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 E + G+ ++ + + +A PHDF+ +L GR+Q I R G Sbjct: 696 RVWRELRLRATEGGV--YRQAYDRVRYWLRLADRVPPHDFYQRVLAR-GGREQLIHRLGF 752 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 E D +DEFL TL E+ S SLQ + L +KR + VR+MTVH AKGL Sbjct: 753 EAEDAIDEFLAQTLAYERESTPSLQGFLHWLVVGDFEVKRELEGAGDTVRVMTVHGAKGL 812 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 ++P+V L DT ++ + + +D IP+W SK+ + + + K+ Sbjct: 813 QAPIVILPDTLRVP----RLQDQWLWYTADDGSDIPLWAASSKAADRVSAQARAEAKRRQ 868 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +EY RLLYV MTRA D+L++C + WY+++ + + + Sbjct: 869 DQEYRRLLYVAMTRAEDRLVVCGWQ---QRRAGTAGNWYELIRNGLAPIAGPQPMPDDPD 925 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 + + P P + + P + + Sbjct: 926 GPPMLMLETLQTASAPSPAPETALQAATLPEWASRPPLQPEPSPPVPLAPSRP-----AG 980 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + D + F RGLI+H+LLQ + + +R + + + + Sbjct: 981 EEPPVRSPLDADDGRRFKRGLILHRLLQTLPEIAPDRRAAAGLRFLERPVHGLDREIAEA 1040 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 L +L++P A + S +EV + G + ++SGRID+++++ + + ++ Sbjct: 1041 WLAEALAVLDDPAFAAAFAAGSRAEVPIVGVVAGADGPAVVSGRIDRLAVTDDEVLVVDF 1100 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 KT+ P ++ +P + QL Y +L YP ++ C L++ P++ + Sbjct: 1101 KTNRPAPLTVDAVPEAYRRQLGTYRTLLAGLYPKHAIRCALVWTDGPRLMEL 1152 >gi|84501212|ref|ZP_00999417.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola batsensis HTCC2597] gi|84390503|gb|EAQ02991.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola batsensis HTCC2597] Length = 1117 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 247/956 (25%), Positives = 408/956 (42%), Gaps = 51/956 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ GL + D++ + + G+ +K A+ L T Sbjct: 207 LERALGLPAGYEVGDLLGDVFLGSEM---GDIAALCAAARGGSANDVKLAEKLAGV--TA 261 Query: 61 CIEERFSLLSSFFLTQK---FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 ++L FL +K + T+ P+L ++++ R R Sbjct: 262 PDLRALAVLEDCFLLKKEPFSAKIGKVPTKATQSAHPELMDRIEPLMARVETARSRRLAL 321 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 ++ T+A A+ Y AK +DF+DLI+ DLL +DVSAW+ +++D I Sbjct: 322 ELLDRTVALHDFARLFLPDYARAKMLRGAMDFDDLILRARDLLTNQDVSAWVLFRLDGGI 381 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKR 236 +HIL+DE QDTS +QW+VI++L +F G RT+F VGD+KQSIYSF GA+P Sbjct: 382 DHILVDEAQDTSPVQWQVIQALAREFTSGAGAQDDKTRTIFVVGDKKQSIYSFQGADPSE 441 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 R + R T G + L SFRS +L +VDKVF A +++ Sbjct: 442 FDRMREEFDDRLTALGTPLQRMALAHSFRSAPALLALVDKVFEGRVEAGFSPDET----- 496 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 H + G V LW V +++ W D ++ +LARRIA TI M Sbjct: 497 HIAFHETLPGRVDLWPLVEKVENTEEGE----WDDPVDLPGEQDHNVVLARRIARTIRGM 552 Query: 357 IGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 I T +G R I A DIL+LVR + L + R K + + + G DR + Sbjct: 553 IDDRTPLPLGDGTARPIHAGDILILVR--RRRRLFHEIIRACKGE-DLDIAGADRLRIGA 609 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 +A+KDL AL F+ + +DDL +LKSPLF + E +F + +R + Sbjct: 610 EIAVKDLTALLSFLATPDDDLGLAAVLKSPLFGWDEQMLFDLAHRRETKRLWPALDAR-- 667 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + + +L A F P++ +L GR++ ++R G E D +D L+ Sbjct: 668 ----EDHAETRRILRDLRDHADFLRPYELLERVLIRHDGRRRLMARLGTEAQDGIDALLD 723 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L E+ SL + L+ P +KR + + +R+MTVH +KGLE+PVVF+ +T Sbjct: 724 QALAYERTDVPSLTGFLVWLQGDDPEVKRQMESAGSRIRVMTVHGSKGLEAPVVFMPETQ 783 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 ++ + + D + W ++ +++ L + + +EE +RLLYV Sbjct: 784 --------ARREELRGEVLSDDDLVWWNMPAREAPPLLAGLREAKLRKQREETDRLLYVA 835 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA LI+ TWY+ + D I+ + E + +W Sbjct: 836 MTRAEKWLIVAAAGELGKSGD----TWYERIRDGMTALGAAPLIRPDGEGLRLE--SGDW 889 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 P + P ++ +P P P L+PS + E L Sbjct: 890 QGLTPIDPPARQDR-------RPALPDWATRPAPRAAAAPRTLSPSELGGAKALPGEEGL 942 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 + RG IH+LL+ + +PE + + +E L R+L Sbjct: 943 DEEAAKRRGRQIHRLLEHLPGVPETELADRAAFVLGHGPDAAEGEELALLTGEAQRILFR 1002 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 P + ++ EVSV+ ++ I G ID++ + + + +YKT+ VP E Sbjct: 1003 PNLRHLFGPEALVEVSVTADLDA-LDGRRIHGTIDRLIVGNETVLAVDYKTNAVVPDRPE 1061 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 +P + Q+ Y L YP + + L++ + ++PQ+ + A + +T Sbjct: 1062 QVPDALLRQMGAYAAALARIYPGRKIETALLWTRTADLMVLPQDLVIAALHDTTTS 1117 >gi|86136735|ref|ZP_01055313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. MED193] gi|85826059|gb|EAQ46256.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. MED193] Length = 1122 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 233/962 (24%), Positives = 398/962 (41%), Gaps = 67/962 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L RF L + ++ +++ +ETG T + A L A T Sbjct: 212 LLARFDLPEEFDQPALEALVFLGGE---AELLSRTRAMLETGGTTDQRAAAKL--AGITT 266 Query: 61 CIEERFSLLSSFFLTQKFT------PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + L S FLT T+++ + + L ++L+ R + Sbjct: 267 PTLADLATLESIFLTGASAADPFAAKVGKFPTKKLREANVALMDQLEPLMLRVESARAKR 326 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + + A+ YE K++ LDF+DLI+N LL V+AW+ Y++D Sbjct: 327 LALMAARKSQDLHQFAQAFLPEYEARKQQRGWLDFDDLILNARHLLNDPAVAAWVLYRLD 386 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS +QW+VI L ++F G S RT+F VGD+KQSIYSF GA+ Sbjct: 387 GGIDHILVDEAQDTSPVQWDVIEKLAQEFTAGIGARSDVERTIFVVGDKKQSIYSFQGAD 446 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P R + R + +G L SFRS+A IL +VD VF G D+ Sbjct: 447 PDAFDRMQVEFANRLSESGSGLQNAALEFSFRSSAAILRLVDLVFKDSP-RAGFHSDAL- 504 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 HR+ + G V LW V + + + WT D ILA RIA I Sbjct: 505 ---HRAFKSDLPGRVDLWPAV----EKTDDDDESDWTDPVDRPGSRHHTVILAERIARQI 557 Query: 354 SNMIGT-------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 MI ++R + A D L+LV++R + L + + R K + + + G Sbjct: 558 KEMIDNKVTIPEDGPTRGTFQRRPVHAGDFLILVQRRSE--LFSEIIRACK-NADLPIAG 614 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR + LA+KD+ AL F+ + ED L+ +LKSPLF +SE +F + R ++ + Sbjct: 615 ADRLKVGAELAVKDIAALLSFLATPEDSLALAEVLKSPLFGWSEQMLFDL-AHRRSSKHL 673 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 + ++ +F + + +L F P D IL +GRQ+ + R G E Sbjct: 674 WPALRDR----REEFPETMAVLDDLRDQTDFLRPFDLIERILTRHQGRQKLLGRLGAEAE 729 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D ++ L+ L E++ SL + ++ IKR A+ + +R+M+VH +KGLE+P Sbjct: 730 DGINALLSQALAYERSDIPSLTGFLVWMQTDDLDIKRQMGASGDMIRVMSVHGSKGLEAP 789 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DT + + G P+W +++ + ++ Q E Sbjct: 790 IVILPDTAKRNAPSD--------AEIMVADGTPLWKLPKDQMPDLLFSAREAAQEKQQNE 841 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA LI+ S E S + + + + + ++ Sbjct: 842 RLRLLYVALTRAEKWLIVATAGTLSKEGDSWYQRVEAALLEGGATKCDLPGGEGL-RLSH 900 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +W E + ++ +P+ + + PS + Sbjct: 901 GDWEGLELVSKEVQS------------KHRSVLPEIFTHLAPAYLAPEPAITPSDLGGAK 948 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + L + + RG +H LL+ + P ++ A + LL Sbjct: 949 ALPGDQGLDEEEAKARGSRLHLLLEHLPGHPSSDWPLLADRLLSE------ATDRAALLA 1002 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + +L N ++ + D+ +EV V+ + G ID++ + + ++K++ Sbjct: 1003 EASAVLSNASLSHIFAPDTLAEVPVTAHF----GSQRLYGIIDRLVVRPDKVLAVDFKSN 1058 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 VP P + Q+ Y L YP++ + L++ + +P + + A E Sbjct: 1059 AEVPNTAAACPKGLLRQMGAYGHALAQIYPDRPIETALLWTRNASLMSLPHDLVTDALKE 1118 Query: 947 IS 948 + Sbjct: 1119 VL 1120 >gi|149201424|ref|ZP_01878399.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. TM1035] gi|149145757|gb|EDM33783.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. TM1035] Length = 1123 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 233/948 (24%), Positives = 394/948 (41%), Gaps = 55/948 (5%) Query: 11 ESYELIYKDLWPLPYFQVSD--INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 + E + + F S+ + ++ +++ G+ +K A L Q S + Sbjct: 213 DQPEGLSAQMIRDGVFLGSEQALLGHLMPALQAGSANDVKAAAKLAQMSAL--DLRALPV 270 Query: 69 LSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 L FLT K + T+ + ++++ R + Sbjct: 271 LEDVFLTGKGAKSPFSAKLGSFPTKATQGVLASVLPQIEQWMLRVEAARPARLALLAMQK 330 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T A A+ YE AK+ +LDF+DLI+ DLL V+AW+ Y++D I+HIL+ Sbjct: 331 TRALHDFARAFLPAYERAKQLRGLLDFDDLILRARDLLTDPAVAAWVLYRLDGGIDHILV 390 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DE QDTS +QW+VI L ++F G+ + RT+F VGD+KQSIYSF GA+P+ R + Sbjct: 391 DEAQDTSPVQWQVIERLAQEFTSGEGARADVARTIFVVGDKKQSIYSFQGADPREFDRMQ 450 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + R + L SFRS+ ILT VD F + E+ H++ Sbjct: 451 QEFGLRLSATNTPLQSRVLAYSFRSSRAILTTVDCCFDQSSESGFTPEEG-----HKAFF 505 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 G V LW V + + +W D A +LAR++A + +MI Sbjct: 506 DTLPGRVDLWPLVEKPDEDEPP----AWHMPVDIRATNDPAILLARQVAAAMRDMITARQ 561 Query: 362 IFSN----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + R +Q D L+LVR+R + L + R K + + G DR + LA Sbjct: 562 AIPDPKSPSGFRAVQPGDFLILVRRR--SALFHEIIRECKAQ-GLPIAGADRLKVGAELA 618 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 ++DL AL F+ + ED L+ L+SPLF +SE ++ + R+ E + A Sbjct: 619 VRDLEALLSFLATPEDSLALATALRSPLFGWSEHQLYTLAQGRNRPYLWEELRARAA--- 675 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 + I + +L+ A F P+D +L +GR++ ++R G E D +D L + Sbjct: 676 --EHPDTITILRDLLDHADFLRPYDLIERVLTRHEGRRRLLARLGTEAEDGIDALLAQAM 733 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E+ + SL + +E IKR + N +R+MTVH AKGLE+PVV L + G Sbjct: 734 AYERRAVDSLTGFLVWMETDDLEIKRQLDSAGNRIRVMTVHGAKGLEAPVVILPECG--- 790 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + P + G +W ++ ++ + +++ E +RLLYV MTR Sbjct: 791 -----VWRTPPAPQIVTQAGHALWTGRADDMPPSLAAALDTERRALLAERDRLLYVAMTR 845 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A LI+ H + + TWY+ V + + + + Sbjct: 846 AETWLIVAAHGDLGKQGD----TWYEKVQRGMLAAGAQPHSFAHGPGLRLDHGIWAETET 901 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 + + LF L+PS + E L + Sbjct: 902 D----------SAPSAPPQTITLDPLFQRPAPLPARIKTLSPSDLGGAKALPGERGLDEE 951 Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837 RG IH+LL+ + T+P H + +E LL ++L P + Sbjct: 952 AAKRRGRQIHRLLEFLPTVPAHDWPATAARLLSNGGDAATGEELALLLAEADKVLTRPSL 1011 Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897 + + +EV+++ ++ P + I G ID++ I I ++KT+ VP P Sbjct: 1012 LALFTPAALTEVAITATLD-PLQGRRIHGVIDRLIIDDTRILAVDFKTNALVPDTPADCP 1070 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + Q+ Y L YP+ + +++ + +P + + A Sbjct: 1071 DALLRQMGAYAHALGQLYPDHRIDTAILWTRTATLMPLPHDLVTAALE 1118 >gi|254294694|ref|YP_003060717.1| double-strand break repair helicase AddA [Hirschia baltica ATCC 49814] gi|254043225|gb|ACT60020.1| double-strand break repair helicase AddA [Hirschia baltica ATCC 49814] Length = 1198 Score = 556 bits (1431), Expect = e-155, Method: Composition-based stats. Identities = 247/977 (25%), Positives = 458/977 (46%), Gaps = 44/977 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 LKN + ++S + + + P F I ++S+ + G T A+ L+Q Sbjct: 234 LKNALN-AGDDSVDQLIEYAM-GPAFPKEKIRPFISVLYD-GAKTDQASAEILEQTLLAN 290 Query: 61 CIEERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLK-------KSQDEFIKIRD 112 +E FS + FLT +K N T +I K SP+++E + + + + Sbjct: 291 TPQEAFSHYKNLFLTSSEVFRKTNPYTVKIAKSSPEIEELFQIKSIPEGEEVYRVRNLLE 350 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + N ++ + A L ++ + + Y K++ +DF+DLI + LL R ++ W+ +K Sbjct: 351 QINARAAYERSAALLRISNIVFSDYARQKRRRAAMDFDDLIESAAGLLTTRSMAQWVLWK 410 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHG 231 ++ ++HIL+DE QDTS QW+++ +LT +FF G+ H +PRT+F VGDEKQSIYSF G Sbjct: 411 LEGGLSHILLDEAQDTSPEQWKLLNALTAEFFSGEGVEHENPRTMFVVGDEKQSIYSFQG 470 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-----ENAQG 286 A+P++ L +++ + + A Q+ ++ +SFRS ++L VD+VF Sbjct: 471 ADPEKFLSKRQEFIEDSARAKQENKTPDILMSFRSAPEVLAFVDEVFDTGAFDGEAAFSL 530 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + +RH R G +G+V+LW + + + + P W + + + + LA Sbjct: 531 KPPEDGNIMRHLPFRRGHIGSVELWPLLRPKVNDESTP----WDAPLGQDLETNPKAELA 586 Query: 347 RRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 RIA + N+I IF GK R + D+L+LVR RK L + + LK + I V Sbjct: 587 DRIAKWVKNIIDTKQAIFDEGKMRPARPGDVLILVRGRKGG-LFDSIIKALKTN-NIPVA 644 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 G DR L D L ++DL+ L RF L EDDL+ +L P +E+D E+ Sbjct: 645 GADRIELLDSLPVQDLLNLIRFALCPEDDLTLAEILTGPFGGLNENDNLYPLAHNRGDES 704 Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISR 520 ++ + K + + ++ E P++F T +L + G Q+ SR Sbjct: 705 LWSRVLKSEMPSVLPVREFLQGCLERR----HIQPYEFLTAVLETQGHDGMDGWQKIQSR 760 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 G + + ++ + SSLQ ++ +E+ +KR S +EVR+MTVH + Sbjct: 761 LGPPAKEPMTALMDRAAGFDAKGPSSLQLFLATIEKSGGEVKRELSGPQDEVRVMTVHGS 820 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----PGIPIWIPQSKSRNNIVSDL 635 KGLE+P+V + DT + S + DD G+PIW +K + + L Sbjct: 821 KGLEAPIVIVPDTCAATKSGVDNNLLITPEKERDDHTSPPEGMPIWSGSAKQDTTLAAKL 880 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--TWYDMVYDSFHNDE 693 E+ RLLYV +TRA D+L+IC + + K+ +W+ + + + Sbjct: 881 RLLADARATREHRRLLYVALTRAKDRLLICGPWSGGVKSKTGHSETSWFAICHKAMQRLA 940 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHP-ENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 ++ + N + + + + I + + IP + + ++ Sbjct: 941 DKGLAQIIDDPNVEPIEGEDNPIAYQFGASQYTDNHAIIENDELDYIPDWIGKTVPHESG 1000 Query: 753 EPYILNPSTIDTKGKTNLESLL-SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811 PS++ + L + S + RG +IH LLQ + +P+ + + + Sbjct: 1001 GSRYAAPSSLLGEEPAVLPPFVKSQEERLKRGRLIHTLLQTLPDIPKADWEKQAMHFLGR 1060 Query: 812 NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQ 870 + A++ + +L++P +S +EV + G + K ++I+GR+D+ Sbjct: 1061 D-PSIKAEDRIEMFERAIDVLDDPKFDPIFGTNSKAEVPIVGGNDKKLPKGMLINGRVDR 1119 Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 + ++ +++ I ++KT P E + T+ AQ++ Y +L+ +YPNK + C +++ P Sbjct: 1120 LVVTDESVLIVDFKTDRPAPAREEDMGPTYTAQMAAYRAVLESAYPNKQIRCAIVWTDGP 1179 Query: 931 KVFIIPQNKLNKAFAEI 947 K+ + ++++ + + Sbjct: 1180 KLMELDADRMDTSLNAL 1196 >gi|260575782|ref|ZP_05843778.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2] gi|259021935|gb|EEW25235.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2] Length = 1090 Score = 556 bits (1431), Expect = e-155, Method: Composition-based stats. Identities = 227/942 (24%), Positives = 377/942 (40%), Gaps = 66/942 (7%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + FGL + E + ++ ++ V+ M TG+ +K A L+ Sbjct: 208 RALFGLPKGLTAETLLAQVFLGGE---AEWLAQVASVMATGSANDVKAADKLRALRLEVP 264 Query: 62 IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115 + L LT + + T+ K L +L+ R+ Sbjct: 265 DLAVLAALEDVLLTGPKAAEPFTAKLGSFPTKATQPKLGPLLPRLQDLMRRVEAAREDRM 324 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 T A Y K LDF+DLI LL V+ W+ +++D Sbjct: 325 ALLAADRTRILHAFAAAFLPRYAARKLARGALDFDDLIARAKALLTDPSVAQWVLFRLDG 384 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VIR L ++F G+ PRT+F VGD+KQSIYSF GA+ Sbjct: 385 GIDHILVDEAQDTSPEQWDVIRLLAQEFTAGRGARDVPRTIFVVGDKKQSIYSFQGADVG 444 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + + + +EL SFRS+ IL +VD F +A D + Sbjct: 445 AFEAMQSLFRANLAQVNTPLQGLELEYSFRSSPLILRLVDLTFDATTHA-----DVGGKV 499 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H + + G V+LW + + P+ W D + E A+ L R++A I N Sbjct: 500 NHIAFKSAMPGQVELWPAL----EPSGKPEDGDWFDPVDLISDEHVAARLGRQVAARIKN 555 Query: 356 MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 MI I +G +R + A D LVLVR+R + + + R K + + G DR L Sbjct: 556 MIDAGVQIPVDGGERPVHAGDFLVLVRRR--SAVFAEIIRACKA-AGLPIAGADRLKLGG 612 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 +A+KDL +L F+ + EDDL+ +L+SPL ++E ++ + R T +++ +++ Sbjct: 613 EMAVKDLASLLAFLATPEDDLALAEVLRSPLLGWTEGQLYTLAQGR--TGYLWQALRQAD 670 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + +H+L A F P D L GR+ ++R G E D +DE L+ Sbjct: 671 ------APETLAILHDLRDQADFLRPFDLIERALTRHDGRRLLLARLGPEAEDGIDELLS 724 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L E+N SL +S L+ +KR + +R+MTVH AKGLE+P+V L DT Sbjct: 725 QALAYERNDVPSLTGFLSWLQTDDVEVKRQADSAGRRIRVMTVHGAKGLEAPIVILPDTA 784 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + + G IW ++ + + + + + E RLLYV Sbjct: 785 DHA-PRDRAELYRL------ADGSMIWKTAAEDSPAPTREAREARRLAAEAESLRLLYVA 837 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA L++ S +W+D + + + W Sbjct: 838 MTRAQCWLMVAAAGKVSGA------SWHDRIRAGMMAAGAEAAVGGGLILRGGVW----- 886 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 P D +P L+PS + + Sbjct: 887 --------PENAPRAGISAADLPALPDWAQRHAPVPPTAEKPLSPSDLGGAKVLPGDLAG 938 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 RG +H LL+ + S + A++ LL T +L Sbjct: 939 DTAAAKLRGTRLHLLLEHLPGQDPALWPALAESLLAE------AEDRLALLAEATTVLTA 992 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 P + + D+ EVSV+ +I + G ID++ + + +YK++ +P Sbjct: 993 PDLAPIFAADALKEVSVTAEI----DGKRLYGTIDRLILLPDRVLAIDYKSNSVIPATSA 1048 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 +P + Q+ Y L YP++ + +++ + ++ +P Sbjct: 1049 QVPEGLLRQMRAYAAALAQIYPDRRVETAILWTATARLMPVP 1090 >gi|56698684|ref|YP_169061.1| ATP-dependent DNA helicase UvrD [Ruegeria pomeroyi DSS-3] gi|56680421|gb|AAV97087.1| ATP-dependent DNA helicase, UvrD/Rep family [Ruegeria pomeroyi DSS-3] Length = 1118 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 227/963 (23%), Positives = 383/963 (39%), Gaps = 69/963 (7%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L F L + + ++ ++ + + ++ K A L ++ Sbjct: 208 LLTLFDLPEGFDTQALLSSVFLGGEV---ELIRALLPALMGSGSNDQKAAARLAAFTRPT 264 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDL-KEKLKKSQDEFIKIRDR 113 +L LT + T+ + + + +L+ RD+ Sbjct: 265 LDG--LIVLEQVLLTGASAKSPFSAKIDSFPTKGLRQGALARQMPQLEALMLRVEAARDQ 322 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + +LA A Y+ K+ LDF+DLI+ LL V+AW+ Y++ Sbjct: 323 RLALAAAQKSLALHRFAAVFLPEYDRRKQLRGWLDFDDLILKARQLLTDPSVAAWVLYRL 382 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGA 232 D I+HIL+DE QDTS QW+VI L ++F G+ S RT+F VGD+KQSIYSF GA Sbjct: 383 DGGIDHILVDEAQDTSPEQWDVIEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGA 442 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P R + ++ ++G + L SFRS++ IL +VD VF A Sbjct: 443 DPDAFDRMQGEFGRKLRDSGSNLEDLTLEFSFRSSSAILGLVDLVFRDRAQAGF-----R 497 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 HR+ + G V LW + D + WT D ILA R+A Sbjct: 498 KESLHRAFKSDLPGRVDLWPLIDKVED----EEDGDWTDPVDRPGARHHTVILAERVAGQ 553 Query: 353 ISNMIGTDTIFSNGK-------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 I MI +R ++ D L+LV++R D L + R K + + Sbjct: 554 IREMIDRGETIPVDGETPGTFARRRVRPGDFLILVQRRSD--LFAEIIRACKA-AGLPIA 610 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 G DR + LA+KDL AL F+ + EDDLS +LKSPLF +SE +F + +R E Sbjct: 611 GADRLKVGAELAVKDLAALLSFLATPEDDLSLATVLKSPLFGWSEQRLFDLAHRRSERYL 670 Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525 + A +F + + +L F P+D IL GR++ + R G E Sbjct: 671 WAALRARRA-----EFAETLAVLDDLRGQTDFLRPYDLIERILTRHDGRRKLLGRLGAEA 725 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 D ++ L+ L E++ SL + ++ IKR + + +R+MTVH +KGLE+ Sbjct: 726 EDGINALLSQALAYERSDIPSLTGFLVWMQTDDLEIKRQMTGVGDMIRVMTVHGSKGLEA 785 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P+V L DT + + G P+W S ++S + + Sbjct: 786 PIVILPDTAQRRAPRD--------AEIMLAEGTPLWRVPRDSSPALLSTAREAAQSREMN 837 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RLLYV +TRA LI+ + ++ +WY V ++ + Sbjct: 838 ERLRLLYVALTRAEKWLIVAAAGDLGSDG----NSWYQAVANAMAEAGATGTEGDILRLE 893 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 +W A E + P P + + PS + Sbjct: 894 HGDWTAP------------ALVEERATPYTAETPPDWASRPAPAPVAAVKTIAPSDLGGA 941 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 E+ + RG +H LL+ + ++ + A +LL Sbjct: 942 KALPGEAGQDEEAAKARGSQLHLLLEHLPGTDPAGWQDHAR----RLLPDLDALLRDDLL 997 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 +L +P + + + +EV ++ + + G ID++ I I + ++K+ Sbjct: 998 AEARGVLNSPALAEIFAPGTLAEVPITAPL----GARRLHGVIDRLLIGDSEIGVVDFKS 1053 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + VP E P + Q+ Y L+ YP ++ +++ ++ +P + + A Sbjct: 1054 NAVVPARPEACPEGLLRQMGAYAYALEQVYPGHTIRTGILWTRTAQIMWLPHDLVAAALG 1113 Query: 946 EIS 948 I Sbjct: 1114 RIQ 1116 >gi|126734388|ref|ZP_01750135.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. CCS2] gi|126717254|gb|EBA14118.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. CCS2] Length = 1112 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 233/965 (24%), Positives = 389/965 (40%), Gaps = 74/965 (7%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-T 59 + + + E + D++ + ++ + +G+ +K A L+ Sbjct: 207 ISETLNIPQGITVENLLDDVFDK------GLLLQLANACASGSANDIKAANALRSILDYP 260 Query: 60 QCIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 + ++L S FLT + T+ DL ++ +R Sbjct: 261 HSPHDVLAVLESVFLTGEGAKAPFTAKIGTFPTKATRAAHEDLMADIEPLMGRVEDMRPH 320 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 T+A A YE K LDF+DLI LL RDV+ W+ +++ Sbjct: 321 RLGLLALDRTMALYDFANVFVPAYEARKLAMGALDFDDLIRKAKALLTDRDVAQWVLFRL 380 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGA 232 D I+HIL+DE QDTS QW VI LT++F G+ RT+F VGD+KQSIYSF GA Sbjct: 381 DGGIDHILVDEAQDTSPTQWAVIEQLTQEFATGEGARMDRERTVFVVGDKKQSIYSFQGA 440 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P + K + + F + L SFRS+ IL+VVD+ F A Sbjct: 441 DPAAFDQMKTHFRDAHQAISKPFEVTSLDHSFRSSQAILSVVDQTFIEDRAAGM-----D 495 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 ++ H + + G V LW + + W D ++A+R+A Sbjct: 496 DSLTHIAFKENMPGRVDLWPVI----EKSKVEDNREWFKPVDEPSATDHTVLMAQRVAEQ 551 Query: 353 ISNMIGTDTIFSN------GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I MI +TI +R I D L+LV++R + L + R K + + G Sbjct: 552 IRYMIAHETIPEEVGNTGAYNRRSITEGDFLILVQRRSE--LFAEIIRACKA-ADLKIAG 608 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR + LA+KDL A+ F+ EDDLS L+SPLF +SE D+F + R + + Sbjct: 609 ADRLRVGAELAVKDLAAVLSFLALPEDDLSLASALRSPLFGWSEQDLFTLAHHRPKNSFL 668 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 +E ++ + + +++L + F P+D IL GR++ ++R G E Sbjct: 669 WEALRNSDHN------ETLAILNDLRGKSDFLRPYDLIERILTRHDGRRKLLARLGPEAE 722 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D +D L+ L E SL ++ +E +KR + + +R+MTVH AKGLE+P Sbjct: 723 DGIDALLSQALAYESTGVPSLTGFLTWMETDDLEVKRQMESQGDRIRVMTVHGAKGLEAP 782 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DT + + + L IW +KS V L + E Sbjct: 783 IVILPDTAK--------RDVKVNQELLPADDHVIWKTPAKSSAPSVIALRDKVIAKQARE 834 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV MTRA LI + + + +WY++V D + Sbjct: 835 RMRLLYVAMTRAEKWLI----AGAAGDIGEGDASWYNLVADGMDRRGAYD--AALGDMPL 888 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +W T + + + + PS + Sbjct: 889 RRVSELDWDAPDLVTTDAKPDTIVAPPQFG----------ALPIPKATKTIAPSELPGDK 938 Query: 767 KTNLESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + D + RG IH LL+ + E +R + L+ Sbjct: 939 IMKGDPAGDDIDDAKARGTQIHLLLEHLPMAAEEQRHELGLQLLQ--------TDDPALV 990 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 + L++ P + + ++ +EV ++ I + G ID++ I I +YK+ Sbjct: 991 DDVIALIKKPELGWLWNANALTEVVITADIPQLG---RVHGAIDRLIIGPDTITAIDYKS 1047 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + VP E P QL+ Y+ L++ YP+ + +++ + ++PQ L++A Sbjct: 1048 NRLVPSTPEDTPIGLQRQLAAYDYALREIYPDHQITTAILWTHTGTLTVLPQQHLHEALN 1107 Query: 946 EISTK 950 ++T Sbjct: 1108 SLATS 1112 >gi|255262268|ref|ZP_05341610.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62] gi|255104603|gb|EET47277.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62] Length = 1119 Score = 554 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 237/956 (24%), Positives = 407/956 (42%), Gaps = 55/956 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 LK FGL + + + ++ + +D ++ + +PT K L++ + Sbjct: 206 LKAVFGLDRDANAQTPIDKIFGVLSQ--TDTRSFLD-VLAAASPTYQKIGVELERTLKQG 262 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 E + L FL + + + L+ +L DE ++ Sbjct: 263 ASTEGYQWLKKSFLYSDGRSKVGNWPQANHKGAVEAFEPLRGELDTFLDEVWQVSQIEKA 322 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + F+ T A T A YE K+++ LDF+DLI+ LL V+ W+ +++D Sbjct: 323 IRSFEMTQALHTFATAFLPMYEARKQQHGWLDFDDLILKAKSLLTNPQVAQWVLFRLDGG 382 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW VI +L ++F G+ H PRTLF VGD+KQSIYSF GA+P Sbjct: 383 IDHILVDEAQDTSPAQWSVIENLAQEFTSGEGARHDEPRTLFVVGDKKQSIYSFQGADPN 442 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + + ++R + + L SFRS+ ILT+VD+ FS S + Sbjct: 443 AFDTMRDMFKERLEQIEIGLNTLSLDYSFRSSEPILTLVDQTFS-----GDRSAGLEKDV 497 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H + + G V LW + + + W D + Q+ LAR IA I Sbjct: 498 FHIAFKNQMPGRVDLWPAIEPTNTK----EDRDWFDPIDQVGQDHHYVQLARGIADEILR 553 Query: 356 MIGTDTIFSN----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M +TI KR I DIL+LV+ R ++V G DR Sbjct: 554 MKAHETIPDEVDRVPMKRPITEGDILILVQGRNSGLFSE--IIAACKQRGLAVAGADRLK 611 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 + LA++D+ A+ F+ EDDLS LKSP+F +SE D++ + +R + + + ++ Sbjct: 612 VGAELAVRDITAVLSFLALPEDDLSLAGALKSPIFGWSEQDLYDLAHKRPKGQYLSATLR 671 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531 + A S+F + + +L A F P+D +L R + + R G E D ++ Sbjct: 672 ERA----SEFPKTREILDDLDRQADFLRPYDLIERLLTRHDARDRLLGRLGTEAEDGINA 727 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 L L E++S SL + + IKR +++R+MTVH AKGLE+P+VFL Sbjct: 728 LLAQALAYERSSIPSLTGFLEWMAAGELEIKRQMDNAGDQIRVMTVHGAKGLEAPIVFLP 787 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 DT KK +P L +W S ++SD + + ++E RLL Sbjct: 788 DTAK--------KKPMPLPKLTTLSDTVVWRGASTDVPQVISDRTERERLKQEDERQRLL 839 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV MTRA L++C + + +WY V V + + Sbjct: 840 YVAMTRAEKWLVVCAAGDVGGDGD----SWYQDVTYGMSQAGAVDETFVIG-------QG 888 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 ++ + PL + +K K+P P + L+PS + E Sbjct: 889 LRFANDGWSDLPLNQ--LVKPSASTSKVPDFATIPTPQHDDPLPTLSPSDLGGAKALFGE 946 Query: 772 SLLSDN-QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 + +D+ + RG IH +L+ + + + + + + + R Sbjct: 947 TETADDGTSKERGTAIHLVLEHLPHIKPEDHSVVAENLL-----GTDSPFLADAIETSQR 1001 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 LL P ++ + +EV ++ ++ I G ID++ + + + ++K++ VP Sbjct: 1002 LLAKPELSHIFETGTLAEVPITANLDA-LDGRRIHGTIDRLVVDSETVTAIDFKSNRMVP 1060 Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 ++ P + Q+ Y L+ YP+K++ +++ + +P + A Sbjct: 1061 DVVDKTPEGILRQMGAYLAALRLVYPSKTVSTAVLWTETGVLMPMPDELVLGALDR 1116 >gi|85705745|ref|ZP_01036842.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. 217] gi|85669735|gb|EAQ24599.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. 217] Length = 1123 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 243/956 (25%), Positives = 396/956 (41%), Gaps = 56/956 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L F S E+I ++ + + +++ G+ +K A L Q S Sbjct: 208 LATLFDQPEGLSPEMIRDRVFLGNEQ---SLLDQLLPALQAGSTNDVKAAAKLVQISAL- 263 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 L FLT K + + T+ + ++++ R Sbjct: 264 -DLRALPFLEDVFLTGKSSKSPFSAKLGSFPTKATQVTLAPVMPQIEQWMLRVEDTRPAR 322 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + T A A+ YE AK+ +LDF+DLI+ DLL V+AW+ Y++D Sbjct: 323 LALLAMQKTRALHDFARAFLPAYERAKQLRGLLDFDDLILRARDLLTAPAVAAWVLYRLD 382 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS +QW+VI L ++F G+ + RT+F VGD+KQSIYSF GA+ Sbjct: 383 GGIDHILVDEAQDTSPVQWQVIERLAQEFTSGEGARADVARTIFIVGDKKQSIYSFQGAD 442 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ R +R R + L SFRS+ ILT VD F + T Sbjct: 443 PREFDRMQREFGLRLSATNSPLQSRVLAYSFRSSRAILTTVDCCFDQSSESGF-----TP 497 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H++ G V LW V + +W D A +LAR++A + Sbjct: 498 EQGHKAFFDTLPGRVDLWPVVEKP----EEEEPPAWHMPVDIRATNDPAILLARQVAAAM 553 Query: 354 SNMIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 +MI + K R +Q D L+LVR+R + L + R K + + G DR Sbjct: 554 RDMIAARQAIPDSKSPSGFRAVQPGDFLILVRRR--SALFHEIIRECKAQ-GLPIAGADR 610 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + LA++DL AL F+ + ED L+ L+SPLF +SE ++ + R+ E Sbjct: 611 LKVGAELAVRDLEALLSFLATPEDSLALAIALRSPLFGWSEAQLYDLAQGRNRPYLWEEL 670 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529 A V+ +H+L + A F P+D +L GR++ ++R G E D + Sbjct: 671 RAHEAER-----PEVMAVLHDLRNHADFLRPYDLIERVLTRHDGRRRLLARLGTEAEDGI 725 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 D L + E + SL + +E IKR + N +R+MTVH AKGLE+PVV Sbjct: 726 DALLAQAMAYESRAVDSLTGFLVWMETDDLEIKRQLDSAGNRIRVMTVHGAKGLEAPVVI 785 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L + G+ + P + G +W ++ ++ I+ +++ E +R Sbjct: 786 LPECGTWRMPN--------APQIVTQSGHALWTGRADDMPPTLAKAIEAERRALLAERDR 837 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV MTRA LI+ H + + TWYD V V + + + Sbjct: 838 LLYVAMTRAETWLIVAAHGDLGKQGD----TWYDKVQRGMQAAGAVPHSFVQGPGFRLDH 893 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + + L R T+ LF L+PS + Sbjct: 894 GIWAETETVSAPPALSRTVTL----------DPLFQRPAPLPARLKTLSPSDLGGAKALP 943 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 E L + RG IH+LL+ + T+P + + E LL Sbjct: 944 GERGLDEEAAKRRGRQIHRLLEFLPTVPAADWPGTAARLLSNGSDAATGDELALLLAEAD 1003 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 ++L P +++ + D+ +EV+V+ + I G ID++ I + I ++KT+ V Sbjct: 1004 KVLTRPSLSSLFTPDALTEVAVTAHLAA-LHGRRIHGIIDRLIIDETRILAVDFKTNALV 1062 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 P P + Q+ Y L YP++ + +++ + +P + + Sbjct: 1063 PDTARDCPDALLRQMGAYAHALSQLYPDRRIDTAILWTRTATLMDLPHDLVTATLE 1118 >gi|119385518|ref|YP_916574.1| UvrD-like DNA helicase domain-containing protein [Paracoccus denitrificans PD1222] gi|119375285|gb|ABL70878.1| UvrD-like DNA helicase, C-terminal domain [Paracoccus denitrificans PD1222] Length = 1124 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 224/966 (23%), Positives = 397/966 (41%), Gaps = 55/966 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L GL+ E + + + + + + + + K A L + Q Sbjct: 198 LWAACGLAPGEDMQSLLAECFA----AGATVIAALVPHLLKSGANDQKAAAKLAPGNWVQ 253 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINK-KSPDLKEKLKKSQDEFIKIRDR 113 ++L S LT + + T+ + +L + L + R R Sbjct: 254 PGPAELAILESVLLTGASAKEPFTAKYDSFPTKALRNGPCAELLDDLAILMERVEAARPR 313 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + TLA Y K + LDF+DLI T LL + ++ W+ +++ Sbjct: 314 RIALAHAERTLALNRFGHAFLNRYRAQKAAHGRLDFDDLIDRTARLLSENSMAQWVLFRL 373 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 D I+HIL+DE QDTS QW+VI LT++F G+ R+LF VGD KQSIYSF GA+ Sbjct: 374 DGGIDHILVDEAQDTSPAQWQVIERLTDEFTSGQGARDQTRSLFVVGDPKQSIYSFQGAD 433 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 + + + ++EL SFRS+ IL +VD+VF+ Sbjct: 434 IAVFEARRTGFAQAFDAVQEPMQVLELRHSFRSSTAILALVDQVFAGDAARG-----LGD 488 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +HR+ R G V LW + P+ WT D + S LAR +A + Sbjct: 489 PPQHRAFRTDMPGRVDLWPAIPKPEK----PEPGDWTDPVDLPAENSETVQLARAVARAV 544 Query: 354 SNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 M+G + G+ R I+A D+L+LV++R + L + LK + V G DR L Sbjct: 545 GEMLGQPIFDAKTGRLRRIRAGDVLILVQRRSE--LFAEIIAALKA-ANLPVAGADRLKL 601 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 +A++D+ AL + + EDDLS L+SPLF+ SE++++++ R + ++ +++ Sbjct: 602 AGEMAVQDIRALLSVLATPEDDLSLAACLRSPLFDLSEEELYRLAAGRKRGQYLWRRLRE 661 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532 + +H ++ + +L+ F P+D +L GR++ ++R G E D +DE Sbjct: 662 SHH------RHAVEVLADLMGQTGFMRPYDLIQRLLIRHGGRERLVARLGPEAQDGIDEL 715 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE---VRIMTVHTAKGLESPVVF 589 L+ L E + SL + L ++R + + +R+MTVH +KGLESP+V Sbjct: 716 LSQALSYESSETPSLTGFLVWLTGDDVEVRRQPGSAGDGEGLIRVMTVHGSKGLESPIVI 775 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 + D + + P L G+ +W + R + V +L + +E R Sbjct: 776 MPDAAKRKPPRE-------APVLPGPDGLSLWRGRKGERPDPVEELAAMQTERQLQERKR 828 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-KIKLTNSINKDE 708 LLYVG+TRA LI+ E + + +W+ MV + + ++ Sbjct: 829 LLYVGLTRAESWLIVAAA----GETGAGEDSWHAMVEAGMGRADLTETRLPAPWGGEIRR 884 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 +W P+ ER + P L +P + + + + Sbjct: 885 LSFGDWPETAPDAVLAERPLPAE--------PDWLRAPPPPAPGKVRPVAATALGGAKVI 936 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-YCTKNAKLWPAKEYKNLLLS 827 G +H LL+ + L E LL Sbjct: 937 GAAGEGDAEAAMLFGTRLHLLLEHLPGRDPADWPELARDVLADAEGGLPGPNELAALLTE 996 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI-IISGRIDQISISQQNIFIFEYKTH 886 ++E P + + +EV + P I ++G +D++ + I +YK++ Sbjct: 997 ARAVIEAPDLAQVFALSDTAEVLAEVALAAPVPGIGTMTGAVDRLVVEPGRILAVDYKSN 1056 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 VP + +P + Q++ Y L+ +P + +++ + + +P + L++ A Sbjct: 1057 REVPDTPDAVPLGILRQMAAYRAALRLIWPAIRVEVAVLWTASRSLMALPDDLLDRVMAG 1116 Query: 947 ISTKIP 952 + P Sbjct: 1117 LDPNRP 1122 >gi|114568640|ref|YP_755320.1| DNA helicase/exodeoxyribonuclease V A [Maricaulis maris MCS10] gi|114339102|gb|ABI64382.1| DNA helicase/exodeoxyribonuclease V, subunit A [Maricaulis maris MCS10] Length = 1183 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 246/978 (25%), Positives = 424/978 (43%), Gaps = 53/978 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L L + +D + +++ + G T + + +T++ A Sbjct: 222 LWAVLELPEGSHAAALKQDA--MAAMPRTEVEAASHALIHEGAKTDVTRGETIRVALAAG 279 Query: 61 CIEERFSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + F + F T+ T ++ T+ I+ + P + L+ D +RD Sbjct: 280 DPAQAFDAYLAAFYTKGGTGTRAASLATKTISDRFPHVLSLLEAEADRLDALRDMIKRAD 339 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEI 177 + +++ +L + Y EA ++ LDF+DLI LL + S W+ YK+D ++ Sbjct: 340 IARASAVALRIVDDFTRAYSEALEQARALDFDDLIRLAGLLLAPENPFSGWVGYKLDGQL 399 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 H LIDE QDT+ QW++IR LT +FF G + RTLF VGDEKQSIYSF GAEP R Sbjct: 400 AHALIDEAQDTAPRQWDMIRGLTAEFFAGAGAQETGRTLFVVGDEKQSIYSFQGAEPARF 459 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS------ 291 + E A F L +SFRS +ILT VD+ F A + + Sbjct: 460 IEEGDRIAASAAAVELPFERPGLDVSFRSAPEILTAVDQAFEAKRPALEMKFVAGATDLP 519 Query: 292 -TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 HR++R G V++W + + ++ S D + SS +LA+ +A Sbjct: 520 FARYQGHRAARSHTPGCVEIWPAIPKPEKT----EEGSIFDPVDLRARGSSRDVLAQTVA 575 Query: 351 YTISNMIGTDTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 I++MI K +R ++ DI +LV +R + R LK + V Sbjct: 576 GEIADMISRGDAVWEEKGGQFTQRPVRPSDIAILVWRRTGG-FFEEVIRQLKL-AGVPVA 633 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF--------NFSEDDIFKIC 457 G DR +L D A+KD++ALGRF ++ DDL+ +L+SPLF E ++ + Sbjct: 634 GADRMVLRDQTAVKDMLALGRFAMTSGDDLALAEVLRSPLFDPVDPAKAGIDEQALYDLA 693 Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA-----KK 512 R + + +F + L A +DFFT L A + Sbjct: 694 RSRTDLKRRGTLWNALFTSEDPRFADARSALSALRDQADKSRLYDFFTGFLNARTPTGET 753 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 + +R G E D L EFL L++E+ +L I+ +E IKR S + +EV Sbjct: 754 RWARMFARLGEEARDPLQEFLARALQHEREEGGALASFIARIEGEDVQIKREMSPDRDEV 813 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 ++MTVH +KGLE PV+ L DT + K +W + + V Sbjct: 814 QVMTVHASKGLERPVIILPDTTRSPLTGKTTPIFAQTDCG------LLWSQRKDDDTDAV 867 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS-NTSNEKKSNQRTWYDMVYDSFHN 691 + L + + E+ RLLYV +TRA D+LI+C + + +WY + +++ Sbjct: 868 AALRQQSENRQLAEHGRLLYVALTRARDRLIVCGWRQGQGHPGRIADDSWYTQLAEAWQG 927 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 +E + + + +D + P+ + + +P + Sbjct: 928 EEWMPFETPVSRLVEDAEPGLRFG-----PAPVALGAVSEAGAGDTSLPAWARLAAPAEG 982 Query: 752 NEPYILNPSTI--DTKGKTNLESLLSDNQT--FNRGLIIHKLLQVIFTLPEHKRKNFITS 807 + PS++ D + + S L+D F RG +IHKLLQ + LP +R+ Sbjct: 983 GQILGAAPSSLLADADSEPAVLSPLADPGGHRFRRGDVIHKLLQTLPDLPSDRREAAGQR 1042 Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867 + + +L +L++P S +EV++ G+ ++II G+ Sbjct: 1043 FLAAQ-SDIAESDRAQILTETLGILDHPDFAPLFGPGSRAEVALVGQAPGLPANMIIRGQ 1101 Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 +D++ ++ + I +YKT+ P ++ + ++ Q++ Y +L+ +P KS+ C L++ Sbjct: 1102 VDRLVVTGDEVLIIDYKTNRPPPADVAAVAKVYLGQMATYRALLRAVHPGKSVRCALLWT 1161 Query: 928 SEPKVFIIPQNKLNKAFA 945 ++ +P L+ F Sbjct: 1162 DAARLMELPDAVLDTIFD 1179 >gi|254488041|ref|ZP_05101246.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101] gi|214044910|gb|EEB85548.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101] Length = 1125 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 234/958 (24%), Positives = 399/958 (41%), Gaps = 68/958 (7%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 FG N S E I ++ + + + + +E G K A LQ + Sbjct: 213 FGQPANLSEETIASSVFLGSEQSI--LAEMIPPMIEKGGL-DGKAAIKLQTLDKM--DIS 267 Query: 65 RFSLLSSFFLTQKFT------PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +L FLT + T+ K L ++ RD + Sbjct: 268 ALPVLEDVFLTGAGANNPFTAKIGAVPTKPTQKILSHLMPQIDDLMARVESARDARLALR 327 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + TL A Y K+K LDF+DLI+ +LL V+AW+ Y+ID I+ Sbjct: 328 AAQKTLVLHQFADAFLKRYALEKQKRGWLDFDDLILKARNLLTNPAVAAWVLYRIDGGID 387 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDTS QW+VI L ++F+ G RTLF VGD+KQSIYSF GA+P+ Sbjct: 388 HILVDEAQDTSPRQWDVIERLADEFYSGDGAREDDARTLFVVGDKKQSIYSFQGADPREF 447 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 ++ + +++ AGQ F L SFRS++ IL +VD F+ +A H Sbjct: 448 DHKQALFEQKILEAGQIFQRRSLDYSFRSSSAILQLVDTSFAPHASAGF-----QADTTH 502 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 ++ + G V LW V D+ W+ D + ILA +IA I ++ Sbjct: 503 KAFKSALPGRVDLWPLVAKSDDADDRE----WSDPVDQKSEHHHTVILADQIARQIKTLV 558 Query: 358 GTDTIFSNG-------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 D ++R I+A D L+LV++R D L + + R K + + G DR Sbjct: 559 EGDHYIPVDGDSAGVFERRRIRAGDFLILVQRRSD--LFSEIIRACKT-AGLPIAGADRL 615 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 + LA+KDL AL F+ + ED LS LKSPLF ++E +F + R E +++ + Sbjct: 616 KVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQMLFTLSHYRSED-HLWQAL 674 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 + ++ + + +L + P+D IL KGR+ F++R G E D ++ Sbjct: 675 RS-----STEHPETVSILKDLRAQVDYLRPYDLIERILTRHKGRRNFLARLGPEAEDGIN 729 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 L L E+ + SL + ++ IKR +++R+MTVH AKGLE+P+V L Sbjct: 730 AMLAQALSYERGAIPSLTGFLVWMQTDDLEIKRQIDNASDQIRVMTVHGAKGLEAPIVIL 789 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 DTG + + I + P+W + + + K+ E RL Sbjct: 790 PDTGKRP--------LVIRDEIIKVDDTPVWKLSDADMPSAMRAALDERKEREMNERLRL 841 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV MTRA LI+ + ++ +WY M+ + + Sbjct: 842 LYVAMTRAEKWLIVAAA----GDLPKDESSWYQMIGAAMGQAGAEPV---------GQTG 888 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + + P+ + I + + P+ +PS + Sbjct: 889 VLRFQHGDWDGLPIRAKAQIPHVTPV--LEPIFDQPVPAIPVREKTTSPSDLGGAKALAG 946 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 E L++ + G ++H++L+ + + + + + A + L Sbjct: 947 EDGLAEEDAKSYGSLVHQMLETLPLMQSDRWDTV----LKTLSDGYDAGVARAALDEAVA 1002 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 L++N + D+ +EV ++ I I G ID++ +++ ++ +YKT+ VP Sbjct: 1003 LMQNADIRHIFDADALAEVPITATIADK----RIHGTIDRLLVTESSVLAIDYKTNRVVP 1058 Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 E P + Q+ Y L+ +P+ + +++ + +P + + A Sbjct: 1059 HTTEACPEGLLRQMGAYAAALRQVFPDHDIRTAILWTRTATLMALPDDLITNALTRAL 1116 >gi|258543653|ref|YP_003189086.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256634731|dbj|BAI00707.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256637787|dbj|BAI03756.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03] gi|256640841|dbj|BAI06803.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07] gi|256643896|dbj|BAI09851.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22] gi|256646951|dbj|BAI12899.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26] gi|256650004|dbj|BAI15945.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32] gi|256652994|dbj|BAI18928.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656048|dbj|BAI21975.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12] Length = 1190 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 243/979 (24%), Positives = 452/979 (46%), Gaps = 51/979 (5%) Query: 1 LKNRFGLSLN----ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56 L GLS + + E + K P ++ + + E G+ I + A +L Sbjct: 233 LCQILGLSPDILHGSTSEFLEKSCTNFPEE--QNLREGFQILSEEGSEAIKRNAFSLLDW 290 Query: 57 SQTQCIEER--FSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 E +S+ + FLT++ + +I++++++K D+ ++K + K+ + Sbjct: 291 LALPASERAAQWSVWRNGFLTKEGKLRSVGLISKKLSEKYSDISLYIQKESERISKVEEH 350 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 K+ + A L +A +++ Y K ++ ++++DLI LL++ + W+ YK+ Sbjct: 351 LRARKLAEMGSALLKMAAAVSSLYTTQKARHGQIEYDDLIQRALGLLREPGAA-WVMYKL 409 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFH 230 D I+H+L+DEVQDTS QW + LTE+FF G S PRT+FAVGD KQSIY F Sbjct: 410 DGGIDHLLLDEVQDTSPEQWRIAGDLTEEFFAGLGGRSEDEPPRTIFAVGDYKQSIYGFQ 469 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+P ++ +KR +A + EL +SFRSTA +L +VD VF+ PE A+G+ E+ Sbjct: 470 GADPDSFREWRQKFKKRVQDAHLLWREPELTVSFRSTAPVLKLVDAVFADPEAAKGVVEE 529 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + H ++R G+ G V+LW V ++ + W + ++S LA +A Sbjct: 530 PGQIMEHITARPGEGGRVELWPLVEAEKEED---IISPWEPAQGNATRQSPRQKLADAVA 586 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + + + + D+LVLV +R +P + L R LK + I VV R Sbjct: 587 GYIFRQLNQKPLSGQ---KPLTPGDVLVLVPRR--SPFVGMLVRALK-GHNIPVVTLVRT 640 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 L +HLA++D+++L +L +DDL+ C+L SPL S++ + + R + E ++ + Sbjct: 641 GLAEHLAVQDMLSLCAALLLPQDDLTLACVLTSPLGGVSDNSLMALAAGREKGEPLWSAL 700 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 ++ + S ++ +++ L + +P++F + LG R +F++R G E + +D Sbjct: 701 RER-HAEQSDWKQAWNFLNGLFRQVDYLTPYEFLSAALGPGGARARFLARLGPEAAEPID 759 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L+ +R + SLQ + + T+KR A + VRIMT H +KGL++ +V L Sbjct: 760 ELLSAAIRYQDQHPPSLQGFLHWMRHSEETVKREAEAGGDSVRIMTAHGSKGLQARLVIL 819 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 DT + +++ + +P+++P++ + L ++ EEYNRL Sbjct: 820 PDTVGLP---RFEERLFWAHDKKQNIDVPLYVPRNALSVGLTRSLKDVMRSRVVEEYNRL 876 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS-----IN 705 LYV +TRA+D+L++C + +WY+ F + + Sbjct: 877 LYVALTRAADRLVVCGWKP---GRNVPAESWYERCRIGFEKAGATEIDFQEGGWSGSMLL 933 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDE-QKIPKKLFSPIKNDINEPYILNPSTIDT 764 +E E + T +E+ E L P + + + L PS D Sbjct: 934 LEETPQEEVNPKKSVPTSVEKSEDTALLPQWMGTAPLWKPTLPEAESPLARPLAPSKPDD 993 Query: 765 KGKTNLES------------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812 L + F RG ++H LLQ + ++ + + Sbjct: 994 AMLGPLPPVRSPLDIAAVTPAKAREAAFRRGNLVHSLLQFLPACSAEQQPAMAHQWLARP 1053 Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872 A + E L + +L P + + +E ++ +I G++D++ Sbjct: 1054 ASGLSSHEAAELAQQVIAVLRLPELADLFDPSARAEQ----RLAGVAGGQVIVGQVDRLR 1109 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + + + ++KT H P+ +E P ++ Q++ Y +L+ +P++ +VC+L++ P+ Sbjct: 1110 VLPNKVLVCDFKTGRHAPRGVEDTPVLYLRQMAAYRALLQGIWPDRPVVCVLVWTEMPRA 1169 Query: 933 FIIPQNKLNKAFAEISTKI 951 ++P L+K I Sbjct: 1170 DVLPDALLDKYAPGILPAA 1188 >gi|158422338|ref|YP_001523630.1| putative exonuclease V [Azorhizobium caulinodans ORS 571] gi|158329227|dbj|BAF86712.1| putative exonuclease V [Azorhizobium caulinodans ORS 571] Length = 1171 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 244/949 (25%), Positives = 427/949 (44%), Gaps = 32/949 (3%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 G++ + I +++ P+ + ++ + + K+A L+ A + + Sbjct: 233 AVLGVAPGTTAADIEREMLDSPHLPQARWPDIEAVYLTSDKANDRKRAAALRAAIEAKDE 292 Query: 63 EERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 ER + F P+ K+++T+ + P + EKL+ +D + + + Sbjct: 293 AERLAAFRDLFFKADGDPRSDKDLLTKGLRDGFPHIAEKLEAERDRLVALTQTLRAARAL 352 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A+L L Y K +LDF+DLI T ++L + ++++ YK+D+ I+H+ Sbjct: 353 ERTEAALALGAEACRRYTAEKAARGLLDFDDLIDRTAEMLGRVP-ASFVHYKLDRGIDHV 411 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239 L+DE QDTS QW V+R L DFF G+ RTLF VGDEKQSI+SF GA+P+ Sbjct: 412 LVDEAQDTSPEQWRVVRGLVSDFFSGEGAREGVKRTLFVVGDEKQSIFSFQGADPRAFGD 471 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + Q+ + F + LP SFRS +L VD +F E + GL+ D+ H + Sbjct: 472 MRLAFQR--EAGQEDFRQVSLPHSFRSAPGVLEAVDAIFQRAEASAGLTIDNVAP-PHAA 528 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 R V+LW VV + + W D + + S LA RIA + I Sbjct: 529 IRADAPSLVELWPTVVPAAKVKVD----DWRRPLDEIAGDDPVSRLAERIASFVRTGIAQ 584 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK-NDYKISVVGNDRFILTDHLAI 418 + R ++A+D+LVLVR+R L + R LK + V G DR ++ +H+A Sbjct: 585 RLAIPSRGGRPMRAQDVLVLVRRR--GRLFEAVIRALKEAGGGVDVAGADRLVVAEHIAA 642 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 DLMALG +LS +DDL+ +LKSPLF ++DD+ ++C +R + + Sbjct: 643 LDLMALGDALLSPDDDLALASVLKSPLFGLTDDDLLRLCPRRE---------GRLLDVVT 693 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 + + + + A+ P DF+ +LG GR+ ++R G E DVLDEF+ Sbjct: 694 TGDGSIAERLTRWRGEARELRPFDFYARVLGRDGGRRAMLARLGPEAADVLDEFMALART 753 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E ++L ++ L + KR + +EVR+MTVH AKGLE+P+V L DT Sbjct: 754 YESLEPATLPGFLAFLRRGGAETKRDMESGRDEVRVMTVHGAKGLEAPIVILADTVD--L 811 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + D +P+ P+ ++ + EEY RLLYV +TRA Sbjct: 812 PKARTSGGLLHVPTADGATVPVLAPRKPEDPPSLAAARAAVTARELEEYRRLLYVALTRA 871 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 D LI+C + K + ++ I+ + W Sbjct: 872 EDALIVCGAETRAAAKDKT----HARPAGCWYELVHAALIEEAEPVPATGWEGEVLRWRK 927 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 T E T+ + + + + PS + + Sbjct: 928 SGRTLAPAEGTLSAPVAPPPPRPARLEDLPPVLISTEAIRPSR--SAAASFRPPADGSLD 985 Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 RG ++H+LL + LPE +R+ A+ A ++ + +L + + Sbjct: 986 PRVRGDLVHRLLAGLGALPEDQREAAGERLLDHVAEQVAAHHRAEVMAEVMGVLTHAPLA 1045 Query: 839 TAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897 + S +EV V G++ + ++GR+D+++++ + + ++KT PQ ++ I Sbjct: 1046 GLFAPHSLAEVPVVGRLTAADGRLVTVNGRLDRLAVTGDQLILADFKTDRVPPQSLDRIG 1105 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 ++ QL++Y +L ++P +++ L+Y P++ ++P+ +L + AE Sbjct: 1106 EGYVGQLALYAAVLARAFPGRAVEAHLVYTRGPRIHVLPEARLRERLAE 1154 >gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius nubinhibens ISM] gi|83838691|gb|EAP77987.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius nubinhibens ISM] Length = 1112 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 232/960 (24%), Positives = 380/960 (39%), Gaps = 57/960 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L GL I ++ + + + +G L Sbjct: 202 LCAALGLPAGADRTTITSRVFLGGE---DALLAELITGLRSGGKQDATHCDRLSSLGPL- 257 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +L S FLT + T+ ++ +L RD Sbjct: 258 -DITALPVLESVFLTGAAAKEPFTAKLGKFPTKAAQPAIAHIQPQLDDFMRRVEDTRDMR 316 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + T A+ Y+ AK +LDF+DLI T DLL V+ W+ +++D Sbjct: 317 CAVMTLEKTQVLYGFARRFITAYDAAKLHRGLLDFDDLITKTRDLLTDPAVAEWVLFRLD 376 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS QW+VI L ++ G + S PRT+F VGD+KQSIYSF GA+ Sbjct: 377 GGIDHILVDEAQDTSPTQWQVISQLAQELTSGAGSRSDRPRTVFVVGDKKQSIYSFQGAD 436 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ + + +R ++ + L SFRS++ +L VVD F A + Sbjct: 437 PRAFDEMRDLFDERLAHSNAPLASRVLEHSFRSSSAVLDVVDATFDGAGEAGF-----SA 491 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 RH + G V LW + + P W D + A +LA IA I Sbjct: 492 DQRHIAFHDALPGRVDLWPPLDKPERPEDPP----WYMPVDIRAENDPAVLLAEEIAAQI 547 Query: 354 SNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 M+ I R + D+L+LV+ R P+ + K + V G DR L Sbjct: 548 DQMVRTRQPIPDGKGWRAVTPGDVLILVQSRTR-PIFNEVIHACKAR-GLPVAGADRLRL 605 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 LA++D+ AL F+ + EDDLS L+SPLF +SE D+F + R + +++ ++ Sbjct: 606 GGELAVRDICALLSFLATPEDDLSLATALRSPLFGWSEQDLFALAQPRG-GKYLWQALRD 664 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532 A + + + +L F P+D +L GR + +SR G+E D +D Sbjct: 665 RA----EAYPDTLAILTDLRDQTDFLRPYDLIERVLTRHDGRARLLSRLGHEAEDGIDAL 720 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 L +L E+ + SL + +EQ IKR + + +R+MTVH AKGLE+PVV L D Sbjct: 721 LAQSLAFERAAVDSLTGFLVWMEQDDLEIKRQLDSAGDLIRVMTVHGAKGLEAPVVILPD 780 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 T + SL P W P + + L K + + E +RLLY Sbjct: 781 TTKRRPPQG--------ASLLASPEAAFWRPLAAELPAALRTLDSDKKDAERAERDRLLY 832 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V MTRA LI+ +T ++ +W+ + + + T Sbjct: 833 VAMTRAEKWLIVAAAGDTGTDRD----SWHSQIAEGMTRVGGSDAMFPTG--QGLRVERG 886 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 +W P+ + + P L PS + E+ Sbjct: 887 DWGATVPDM-------AAESAPVPAPLAAHFAQPAPRGTLPSAPLTPSDLPGPKALAGEA 939 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 + G ++H LL+ + L + L T L+ Sbjct: 940 GRDTDTALREGRLLHALLEHLPALDPSDHPRLAADLARAEEM----PDATPWLSLATALI 995 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 NP + D+ +EV +S + + G ID++ I+ ++ ++K++ +P Sbjct: 996 ANPDLGQIFGPDTLAEVPLSATLP-ELGNRRFHGIIDRLRIAPDHVLAVDFKSNQVIPAT 1054 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 E P + Q+ Y +L YP++ + +++ + +P + + AF ST +P Sbjct: 1055 PEATPLGILRQMGAYRAMLSRIYPDRRIDTAILWTHSGSLMPLPHDLVINAFD--STVLP 1112 >gi|182679138|ref|YP_001833284.1| double-strand break repair helicase AddA [Beijerinckia indica subsp. indica ATCC 9039] gi|182635021|gb|ACB95795.1| double-strand break repair helicase AddA [Beijerinckia indica subsp. indica ATCC 9039] Length = 1164 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 253/958 (26%), Positives = 429/958 (44%), Gaps = 49/958 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ L E+ E I + + + ++ + TG+ T K+A LQ+A + Sbjct: 217 LRKALDLVPGETIETIQRAMIEDGI--APSLWPDIAAFLLTGSATDQKRAAALQKAYEAY 274 Query: 61 CIEE-------------RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107 + F T K K ++T+++ ++ PDL + L QD Sbjct: 275 GSAATGGGRVQEGAQGACLAHYLGIFFTAKEEKAKQLLTKKLAEQRPDLDDLLYAEQDRL 334 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ D+ + TLA L+L + + YE +K LDF DLI T LL + D Sbjct: 335 DRLADKQKAAAILARTLALLSLTEAIFERYEASKAHQGFLDFNDLIERTKALLFRSDAR- 393 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 W+ YK+D I+HIL+DE QDTS QW+++ +T DF G ++ RT FAVGDEKQSI+ Sbjct: 394 WVLYKLDAGIDHILVDEAQDTSEAQWKILEEMTGDFASGLSSRVDTRTFFAVGDEKQSIF 453 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 SF GA P + +R R + F+ + L SFRS IL VD++F + QGL Sbjct: 454 SFQGAAPHMFDQMRRRFNARFDAGEKAFNHVRLTDSFRSVPGILETVDQIFDHAGHYQGL 513 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + H + + G V+LW V WT D + +I+A Sbjct: 514 VAANDPWMPHTALKAQLPGLVELWPLVGPSETED----IRDWTLPLDFPDEHDPPNIVAW 569 Query: 348 RIAYTISNMI---GTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 R+A I++++ + ++ + R I+A DIL+LVR R P + R LK +I Sbjct: 570 RVAQKIAHLLTDRAHEHVYDEKQGLRPIRAGDILILVRSR--GPFFAAIIRALK-QLQIP 626 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 V G DR + H+A+ DL+A GR L +DDL+ C+LKSPL +++D+ + Sbjct: 627 VAGADRLAILQHIAVMDLIAAGRAALLPQDDLTLACVLKSPLIGLTDEDLIAL--APGRP 684 Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 ++++ + + P F+ +LG GR+ +R G Sbjct: 685 ASLFDA---LRQSEDPRHAAAAARLDLWHQRIG-LPPFTFYAQLLGTDGGRRDLEARLGP 740 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 E D +DEFLN TL++E++S SL ++EL+ P+++R + VR+MTVH AKGL Sbjct: 741 EAADAIDEFLNLTLQHERDSTPSLVAFLAELDNRDPSVRRDMETGADLVRVMTVHAAKGL 800 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E+ +VFL DT ++ S H + + + D I W ++ + ++ Sbjct: 801 EAKIVFLPDTCAKA-SGSHDPLVFSLGTDAHDAQILAWSSGKTKDCAALAKAREISRQGE 859 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 ++E+ RLLYV +TRA ++L I +K +W++M+ ++ Sbjct: 860 EDEHRRLLYVALTRAEERLYITGFH---GKKGPGNGSWHEMI---DAALLGSAMEEIPAF 913 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 + E + S E + ++ +P L + L PS+ Sbjct: 914 WDPAENVRRRLSPGSLSPDDTHSREEEAKTDNKHLLPSWLVEAPPPEAEARPPLRPSSAL 973 Query: 764 TKGKTNLESLLSD------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 E + RG +IH LLQ + ++ R+ + A+ Sbjct: 974 AAADGLDEDFMPTAATPANLAALQRGRLIHLLLQYLPSITPSHRQQAAMGFLGIKARYLD 1033 Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII-ISGRIDQISISQQ 876 K + L ++E+P + S +EV+V+G I+ + ++GRID+I + + Sbjct: 1034 GKTHALLTAEALTIIEDPKLRGLYLPRSLAEVAVAGTISLGAGRTLSVNGRIDRIGETDE 1093 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 + + +YKT P T++ Q+++Y +L +P+K + LLI+ + + Sbjct: 1094 AVLLADYKTGAMPRNG--RTPETYLTQMALYRAVLTPLWPDKPIRVLLIWTASASIQE 1149 >gi|84685773|ref|ZP_01013669.1| Helicase, UvrD/Rep family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665866|gb|EAQ12340.1| Helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2654] Length = 1119 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 245/941 (26%), Positives = 395/941 (41%), Gaps = 50/941 (5%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 + GL + + ++ P F+ + + + + T++ AQ L Sbjct: 206 DELGLPQDFKLVDVLSQVF-TPGFKSAI--QSAPPILSQHSSTMVTLAQKLAGIDTVSPS 262 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 + F L+S LTQ T +KN++T+ D E L + DR + Sbjct: 263 QSDFDALASALLTQSGTVRKNLLTKPAIADLGDTAETLLALAEVVETEVDRVKALAVIDR 322 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T+A A YEE K +N LDF+DLI+ + LL DV+ W+ +++D I+HIL+ Sbjct: 323 TVALHDFAHPFVRMYEERKARNGWLDFDDLILRASALLNASDVAQWVLFRLDGGIDHILV 382 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-TLFAVGDEKQSIYSFHGAEPKRVLREK 241 DE QDTS QW VI SL +F G+ H+ ++F VGD KQSIYSF GA+P + Sbjct: 383 DEAQDTSPSQWRVIDSLAREFMSGEGAHADREWSIFVVGDPKQSIYSFQGADPDEFASMR 442 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 ++ + + L SFRS+ ILT VD + G T HR+ Sbjct: 443 DAFDEKLRQIERPLQQMPLEYSFRSSPAILTAVDVTLDDVDGLGG------TKPHHRAFH 496 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + G V LW + + + P W D LA IA I+ MI + Sbjct: 497 GDRPGRVDLWPAIEPVKEDEPRP----WDDPLDVAAPTDHTVQLAENIAGEIARMIEEEH 552 Query: 362 IFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + + K R + DIL+LV++R D L L R K+ + + G DR + +A Sbjct: 553 VPATEKGETGFRPVVPGDILILVQRRSD--LFHHLIRACKSR-GLPIAGADRLRIGGEMA 609 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 +KDL AL F+ + ED+LS +L+SPLF SED+++++ R ++ + + Sbjct: 610 VKDLTALLSFLATPEDNLSLASVLRSPLFGLSEDELYRLAYGRE--GYLWRALWDSGH-- 665 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 + V++ + +L A F P+D +L GR+ + R G E D +D L L Sbjct: 666 ----RRVVEALSDLRDQADFLRPYDLIDRVLTRHDGRRLLLGRLGAEAEDGIDAMLAQAL 721 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E+ SL ++ L+ IKR ++ E+R+MTVH AKGLESP+V L DT + Sbjct: 722 AYERVEVPSLTGFLTWLDTEDVEIKRQMDSDAREIRVMTVHGAKGLESPIVILPDTTKRP 781 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + L +W P + ++++ + + EE RLLYV MTR Sbjct: 782 --------VRDLSDLVVLENNVVWRPAAPDMPSVLALKKEEARTKGAEERMRLLYVAMTR 833 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A LI+ + E +W+ +V D + V + + + Sbjct: 834 AESWLIVAGAGDVGKEAS---DSWHGLVRDGLTKLDAVPRGFPSGTGG--------LRFQ 882 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLSD 776 + ER E P + P ++PS + L Sbjct: 883 VGDWPAGERRNVTADADREPDPPDWSLVAAPHRDPAPKPISPSDLKGAKVVPGAVEGLDG 942 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 + RG IH+LL+ + T P + E LL T +L++P Sbjct: 943 DAAKRRGRQIHRLLEFLPTYPREDWPATARALLAFGEDAASDAELAELLAEATAVLDSPA 1002 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + SEV ++G + + G ID + I + ++K++ P E I Sbjct: 1003 LAPLFERGVLSEVEITGPAGSSGEKR-LHGIIDLLVIEPDRVLAIDFKSNLTEPDAAEAI 1061 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 P +AQL YE L YP++ + +++ + +P Sbjct: 1062 PEGILAQLGAYESALSAIYPDRRIESAVLWTRSATLMPVPP 1102 >gi|84514936|ref|ZP_01002299.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis SKA53] gi|84511095|gb|EAQ07549.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis SKA53] Length = 1113 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 238/964 (24%), Positives = 407/964 (42%), Gaps = 71/964 (7%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ-ASQT 59 + L + + + + + + TG+ T K A+ L+ A+ Sbjct: 207 ICRTLHLDPAMTVQTLVLRVLDADAIAA---LRQLQQICATGSVTDRKAAEKLRAVAADG 263 Query: 60 QCIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 LL FL + T+ + + P+L + + R Sbjct: 264 TARLSDLQLLEGVFLFGDSAKDPFGPKIGSFPTKALREAHPELIADIDILMELVAGARQD 323 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 TLA + YE K LDF+DLI LL V+ W+ +++ Sbjct: 324 RMALAALDRTLALYAFGRAFVPAYEARKLAMGSLDFDDLISKARALLTDPAVAQWVLFRL 383 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGA 232 D I+H+L+DE QDTS QW+V+ +LT++F G + + RT+F VGD+KQSIYSF GA Sbjct: 384 DGGIDHVLVDEAQDTSPAQWDVVETLTQEFATGAGSRPNRERTVFVVGDKKQSIYSFQGA 443 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P + K + G+ F L SFRS+ +L+VVD F+ + A Sbjct: 444 DPAAFDKMKAHFRAAHKAIGKPFEATSLDHSFRSSQAVLSVVDATFTGDQAAGM-----D 498 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + H + + G V LW + + P W D +A+RIA Sbjct: 499 DALTHIAFKDRMPGRVDLWPVIEAAKTEDNRP----WYQPVDQPGDADHHVQMAQRIADQ 554 Query: 353 ISNMIGTDTIFSNG------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 IS+MI +TI K+R I A D+L+LV++R D L + R K +++ G Sbjct: 555 ISHMIAHETIPVEDGNTGTYKRRRITAGDVLILVQRRSD--LFAEIIRACKA-AGLNIAG 611 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR + LA+KDL AL F+ EDDLS L+SPLF +SE D+F + R + + + Sbjct: 612 ADRLRVGAELAVKDLAALLSFLALAEDDLSLAAALRSPLFGWSEQDLFTLAHHRGDKKFL 671 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 +E ++K A+ + +++L A F P+D IL GR++ ++R G E Sbjct: 672 WEALRKSAHH------ETLAVLNDLRGKADFLRPYDLIARILTRHDGRRKLLARLGPEAE 725 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D +D L+ L EQ SL ++ ++ +KR + +++R+MTVH AKGLE+P Sbjct: 726 DGIDALLSQALAYEQTGVPSLTGFLTWMQTDDLEVKRQMDSQGDKIRVMTVHGAKGLEAP 785 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L +T +K + P IW S + + L + EE Sbjct: 786 IVILPET--------MTRKKDFKGEILPAPDCVIWKTISAATPASMVTLRDAVLAKQDEE 837 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV MTRA LII S + +WY++V + + + + Sbjct: 838 RLRLLYVAMTRAEKWLII----GASGDVGEGMESWYNIVAAGMKKRQAGAAMSGDLQVQR 893 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + P++ + + + DI ++PS + Sbjct: 894 VAHLDWNGLDLVPKDAVTAPDVIVPEFG------------PLPDIARAKTISPSELLGAK 941 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + D RG +IH LL+ + R + L Sbjct: 942 VLPGDIAEDDADAKERGTLIHLLLEHLPRATPADRAALGYALV---------PTDTALTD 992 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 S+ +LL+ P + + D+ +EV ++ + I G ID++ ++ + +YKT+ Sbjct: 993 SVIQLLDQPALAHLWNDDALTEVPITADLPDLG---RIHGTIDRLILTPTTVLAVDYKTN 1049 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 VP + H P + Q ++Y L+ +P++ + +++ ++ ++ +P+ L++ Sbjct: 1050 RIVPDQPAHTPLGVLRQQAVYCAALRQVFPDRQITVAILWTAKAQLMDLPETLLHETMTG 1109 Query: 947 ISTK 950 ++T Sbjct: 1110 LATA 1113 >gi|329113820|ref|ZP_08242591.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001] gi|326696830|gb|EGE48500.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001] Length = 1190 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 237/970 (24%), Positives = 442/970 (45%), Gaps = 51/970 (5%) Query: 1 LKNRFGLSLN----ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56 L GLS + + E + K P ++ + + + G+ I + A +L Sbjct: 233 LCQILGLSPDILHGSTSEFLEKLCSDFPEE--QNLREGFQILSKEGSEAIKRNAFSLLDW 290 Query: 57 SQTQCIEER--FSLLSSFFLTQKFTPQKN-IITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 E +S+ S FLT+ + +I++++++K D+ ++K + ++ ++ Sbjct: 291 LALPASERARQWSVWQSGFLTKDGKLRSAGLISKKLSEKYSDIALYIQKEGERISRVEEQ 350 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 K+ + A L +A +++ Y K ++ ++++DLI LL++ + W+ YK+ Sbjct: 351 LRARKLAEMGSALLKMAADVSSLYTTQKARHGQIEYDDLIQRALGLLREPGAA-WVMYKL 409 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFH 230 D I+H+L+DEVQDTS QW + LTE+FF G S PRT+FAVGD KQSIY F Sbjct: 410 DGGIDHLLLDEVQDTSPEQWRIAGDLTEEFFAGLGGRSEEEPPRTIFAVGDYKQSIYGFQ 469 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+P ++ +KR +A + +L +SFRSTA +L +VD+VF+ + A+G+ E+ Sbjct: 470 GADPDSFREWRQKFKKRVQDAHLLWREPDLTVSFRSTAPVLKLVDEVFAESDAAKGVVEE 529 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + H ++R G+ G V+LW V W + ++SS LA +A Sbjct: 530 PGQIMEHITARPGEGGRVELWPLV---ETEDEEDSISPWEPAQGNATRQSSRQKLADAVA 586 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + ++ + A D+LVLV +R +P + L R LK + I VV R Sbjct: 587 GYIFRQLNKKSLSGK---NPLTAGDVLVLVPRR--SPFVGMLVRALK-GHNIPVVTLVRT 640 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 L +HLA++D+++L +L +DDL+ C+L SPL S+D + + T R + E ++ + Sbjct: 641 GLAEHLAVQDMLSLCAALLLPQDDLTLACVLTSPLGGVSDDSLMALATVREKGEPLWSAL 700 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 ++ + S ++ +++ L + +P++ + LG R +F++R G E + +D Sbjct: 701 RER-HTEQSDWKQAWNFLNGLFRQVDYLTPYELLSAALGPGGARARFLARLGPEAAEPID 759 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L+ +R + SLQ + + T+KR A + VRIMT H +KGL++ +V L Sbjct: 760 ELLSAAIRYQDQHPPSLQGFLHWMRHSEETVKREAEAGGDSVRIMTAHGSKGLQARLVIL 819 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 DT + + +P+++P++ + L ++ EEYNRL Sbjct: 820 PDTVGLPRFEDR---LFWAHDKTQNVDVPLYVPRNALSVGLTRSLKDVMRGRVVEEYNRL 876 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV +TRA+D+L++C + +WY+ F + + + Sbjct: 877 LYVALTRAADRLVVCGWKP---GRNVPAESWYERCRVGFEKAGATEVDFQEGGWSGPMLL 933 Query: 711 AYEWSTHHPENTPLEREETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 E P + + P + + L PS D Sbjct: 934 LEETQQEQPHPQKSRPSSVDNRMNVTSLPLWMGTAPLWKPILPEAESPLARPLAPSKPDD 993 Query: 765 KGKTNLES------------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812 L + F RG ++H LLQ + P ++ + + Sbjct: 994 TMLGPLPPVRSPLDIAAVTPAKAREAAFRRGNLVHSLLQFLPNCPVEQQPAMAHQWLARP 1053 Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872 A + E L + +L P + + +E ++ +I G++D++ Sbjct: 1054 ASGLSSHEATVLAQQVIAVLRLPELVDLFDPTARAEQ----RLAGVANGQVIVGQVDRLR 1109 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + + + ++KT H P+ ++ P ++ Q++ Y +L+ +P++ +VC+L++ P+ Sbjct: 1110 VLPNKVLVCDFKTGRHAPRRVQDTPVLYLRQMAAYRALLQGIWPDRPVVCVLVWTEMPRA 1169 Query: 933 FIIPQNKLNK 942 ++P L+K Sbjct: 1170 DVLPDAVLDK 1179 >gi|58039096|ref|YP_191060.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H] gi|58001510|gb|AAW60404.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H] Length = 1191 Score = 542 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 246/968 (25%), Positives = 421/968 (43%), Gaps = 48/968 (4%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + + +S E + P D+ + +++ + + T Sbjct: 242 RKAL-KAGQQSLEDLESLACQPPKEN--DLRAGLRDALDVVTDAGRVIVEQMLGWLGTNP 298 Query: 62 IEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 E ++ + LT++ P+K I++++ +K L L+ + ++ + ++ Sbjct: 299 AERVPAIWAKCLLTKEGKPRKMNGIVSKKAQEKVGYLVPVLEDEAQRLVDLQASLKSARL 358 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 A L LA + ++++K ++D+ DLI T +LL+ + W+ YK+D I+H Sbjct: 359 VLLNRALLGLAAPMLTAFQDSKSARGLVDYNDLIQETRNLLRDPGAA-WVLYKLDGGIDH 417 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH---SSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DEVQD S +QWE+ +LT +FF G+ PRT+FAVGD KQSIY F GA+P+ Sbjct: 418 LLLDEVQDNSGLQWEIAGALTSEFFAGEGAWDMGPRPRTIFAVGDYKQSIYGFQGAQPEE 477 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI- 295 R + R NAG + EL +SFRS +L+ VD VFS P A GL +D T+ Sbjct: 478 FHRWRHEFASRVRNAGLLWRDPELNVSFRSVPPVLSFVDAVFSQPLAAHGLLQDDEKTLR 537 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H S+R GQ G V+LW V + W + + Q S+ LA +A I Sbjct: 538 PHVSARPGQGGRVELWPLVPVVQGEDDDEGLTPWRAPSANTGQRSAPQRLAEALAEWIDQ 597 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 IG + + A D+L+LV +R +P + L R LK+ + V R LT Sbjct: 598 QIGRPPLPGQA---PLTAGDVLILVPRR--SPFLRSLIRALKSR-NVPVATLVRVGLTQQ 651 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA- 474 +A++DLM L +L +DDL+ +L SPL ++D + + T+ T + Q Sbjct: 652 VAVRDLMTLCAALLLPQDDLTLASVLTSPLGGLTDDSLMALATRNGTTHALGPKGQPLWT 711 Query: 475 -----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529 + ++ + + L + SP+ LG GR + + R G E + + Sbjct: 712 VLRERHREREDWRAAWEMLSTLYVRVDYASPYRLLAETLGQHGGRTRLLRRLGPEAAEPV 771 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 DE L LR E SLQ + LE T KR + VR+MTVH +KGL++ +V Sbjct: 772 DELLTAALRYEGLHPPSLQGFLHWLEASEITSKREAESELGAVRVMTVHGSKGLQARLVV 831 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 + DT S+ + +P+W+P+ ++ + L + + + E NR Sbjct: 832 MPDTTSKPPPGSD-----FLWEEAGALELPLWVPKKDMGTDVTTALSERDAEKARAESNR 886 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV +TRASD L+IC +++ +WY F + + + Sbjct: 887 LLYVALTRASDWLVICGA---GAKREPADTSWYRQCEAGFRQLANARSEPMDLGWEGERL 943 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQ--KIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 + E T P E + + + P ++ L PS D Sbjct: 944 VLEEARTLAPVAFQSGSAEPPCATLPDWMGRAPDWKPVITPHEDAMTRPLAPSRPDGAEF 1003 Query: 768 TNLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 L + S Q RG +IH+LLQ++ +R+ + ++ A Sbjct: 1004 GELPAARSPLELLAGRPTPVREQAMRRGTMIHRLLQLLPETLPAEREAVALRWLSRRALG 1063 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875 E K L + +L +P + + S +E +SG ++ G++D++ I Sbjct: 1064 LTEPEIKRLAEQVLGVLSHPDLAPLFALGSRAEQPISGV----SAGRVVLGQVDRLRIGD 1119 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I++ +YKT+ + E P ++ Q++ Y +L +P + C L++ P V + Sbjct: 1120 GQIWVCDYKTNRNPHLRAERTPVAYLRQMAAYRAVLAQLHPGYDIHCSLVWTEGPVVVTL 1179 Query: 936 PQNKLNKA 943 P L++ Sbjct: 1180 PSPLLDQV 1187 >gi|163745129|ref|ZP_02152489.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45] gi|161381947|gb|EDQ06356.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45] Length = 1123 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 225/957 (23%), Positives = 403/957 (42%), Gaps = 67/957 (7%) Query: 4 RFGLSLNE-SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 ++ + + I ++ + + + + K LQ+ + Sbjct: 211 ALFAQPDDLTEDKIAGSVFLGSE---ATMVAEIIPHLLAKGGNDGKAGAALQEIERY--D 265 Query: 63 EERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 L + LT + T+ K + +L++ R+ Sbjct: 266 LSALPQLENILLTGSGAKAPFTAKIGSFPTKPTQKVIAEQMPQLEQLMQRVEDAREARLA 325 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 K + + A A Y + K+K LDF+DLI+ LL + V+AW+ ++ID Sbjct: 326 LKAARKSYVLHRFASRFLARYADEKQKRGWLDFDDLILKARALLTDKAVAAWVLFRIDGG 385 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VI LT++F+ G + RTLF VGD+KQSIYSF GA+P+ Sbjct: 386 IDHILVDEAQDTSPRQWDVIERLTDEFYSGAGARNEVDRTLFVVGDKKQSIYSFQGADPE 445 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + R+ +++ AGQ F L SFRS++ IL VD VF + T Sbjct: 446 ELDRKGATFEQKIGEAGQFFQRRSLAYSFRSSSAILRAVDGVFDPA------IQTGFTND 499 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H + + G V LW + + ++ WT D LA RIA I Sbjct: 500 GHLAFKDRLPGRVDLWPFI----EKAGPDEEGDWTDPVDRRSARHHTVQLAERIARRIKE 555 Query: 356 MIGTDTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 + + + +R IQ D L+LV++R + L + + R K ++ + G DR Sbjct: 556 LTTEEHYLPDDSKGGLARRRIQPGDFLILVQRR--SALFSEIIRACKA-AELPIAGADRL 612 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 + LA++DL A+ F+ + +DDLS LKSPLF +SE D+F + R E +++ Sbjct: 613 KVGAELAVRDLAAILSFLATPDDDLSLATALKSPLFGWSEQDLFTLAHYRKE-----DHL 667 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 + + + +L + P+D IL GR++ ++R G E D ++ Sbjct: 668 WQALRNQTEAHAATLAVLRDLRAQVDYLRPYDLIERILTRHDGRRKLLARLGPEAEDGIN 727 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 L+ L E+ + SL + ++ IKR + N++R+MTVH AKGLE+P+V L Sbjct: 728 AMLSQALAYERGAVPSLTGFLQWMQTDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVIL 787 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 DTG + + I + G P+W + + + +K++ +E RL Sbjct: 788 PDTG--------RRDVTIKDEIITVDGTPVWKASADDTPQPIRARLDEMKEAALQERLRL 839 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 YV MTRA LI+ S ++ S + + + Sbjct: 840 FYVAMTRAEKWLIVAAAGELSKDESSWYQITAAALARLQA---------------EPLGD 884 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + L ET ++++ ++ P E L+PS + Sbjct: 885 DGTLRYQQGDWDALNIVETPEEIVTTPQLDPIFARPAPAPSGEAKTLSPSDLGGAKALAG 944 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 E+ + + G ++H+LL+ + + R+ + + A+ + Sbjct: 945 EAGFDMDTALSYGTLVHELLEHLPLMDAEAREI----FLNRLARSHSVEMIARAQEEAEA 1000 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 +L P + + + +EV V+G + + G ID++ I++ +I ++KT+ VP Sbjct: 1001 VLRTPALAPLFADTTLAEVPVTGSL----GAQRLHGTIDRLVIAEDHILAVDFKTNRVVP 1056 Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 + P + Q+ Y +L+ YP + + +++ ++P + ++P + A + Sbjct: 1057 NAPDACPDGLLRQMGAYAHMLRQIYPQRRIETAILWTAKPALMVLPNEIVTNAMRAL 1113 >gi|126738527|ref|ZP_01754232.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. SK209-2-6] gi|126720326|gb|EBA17032.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. SK209-2-6] Length = 1126 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 234/963 (24%), Positives = 401/963 (41%), Gaps = 72/963 (7%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ RF L + + + ++ +++ + +++G T + A L AS Sbjct: 211 LQERFDLPDGFDRQSLEQSVFLGGE---AEVLAELRSLLQSGGTTDQRAAAKL--ASIDA 265 Query: 61 CIEERFSLLSSFFLTQKFT------PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + L S FLT T+++ + + L ++++ R + Sbjct: 266 PALADLAHLESIFLTGASAAAPFSAKIGKFPTKKLREANLALMDRVEPLMRRVEDARAKR 325 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + + A+ YE K+ LDF+DLI+ LL V+AW+ Y++D Sbjct: 326 LALTALRKSWELHQFAQAFLPEYERRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLD 385 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS +QW+VI L ++F G+ S RT+F VGD+KQSIYSF GA+ Sbjct: 386 GGIDHILVDEAQDTSPVQWDVIEKLAQEFTAGEGARSGVERTIFVVGDKKQSIYSFQGAD 445 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P R +R R G L SFRS+A IL +VD VF + A Sbjct: 446 PDAFDRMQREFGNRLAETGAGLQNAALEFSFRSSAAILRLVDLVFQGQDAAGF-----PR 500 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 HR+ ++ G V LW V D ++ WT D + ILA RIA I Sbjct: 501 DALHRAFKVDLPGRVDLWPVVEKPDDD----EEVDWTDPVDRPGKRHHTVILAERIAQQI 556 Query: 354 SNMIGTDTIFSNG-----------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 +MI ++R + A D L+LV++R + L + + R K + Sbjct: 557 KDMIDQKVTLPIDGPKGPDGQMTFERRPVHAGDFLILVQRRSE--LFSEIIRACK-KADL 613 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 + G DR + LA+KD+ +L F+ + ED L+ LKSPLF +SE +F + +R Sbjct: 614 PIAGADRLKVGAELAVKDIASLLSFLSTPEDSLALAEALKSPLFGWSEQMLFDLAHRRDG 673 Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + ++E ++K S+F + + +L F P D IL KGRQ+ + R G Sbjct: 674 KQHLWEALRKR----KSEFPQTMGILDDLRGQTDFLRPFDLIERILTRHKGRQKLLGRLG 729 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 E D ++ L+ L E++ SL + ++ IKR A VR+M+VH +KG Sbjct: 730 PEAEDGINALLSQALSYERSDIPSLTGFLVWMQTDDLEIKRQMGAAEGMVRVMSVHGSKG 789 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE+P+V L DT + + G P+W + +++ ++ Sbjct: 790 LEAPIVILPDTAKRNAPRD--------AEIMVAEGTPLWKLPKEQMPDLLLSARNTAQEK 841 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 Q E RLLYV +TRA LI+ + S E + + + S Sbjct: 842 QQNERLRLLYVALTRAEKWLIVGAAGDLSKEGDTWYQRVEAALKSS-------------G 888 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 +++ + H + L E + + +P + + ++PS + Sbjct: 889 AVDHEHPGGTGLRLEHGDWDALPYVEKERSVSALPSLPDVFLQKAPDYLAPAPAVSPSDL 948 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA-KEY 821 + L + + RG + L EH + + L + Sbjct: 949 GGAKALPGDRGLDEEEAKARGT-------RLHLLLEHLPLLPPEQWQERATALLSGVHDQ 1001 Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881 K LL + +L + + DS +EV+++ + + G ID++ I+ + Sbjct: 1002 KELLDEASAVLLARDLEHVFAPDSLAEVAITADL----GQHKLYGIIDRLVITSDYVLAV 1057 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 ++K++ P+ P + Q+ Y L YP+K + +I+ ++ ++P + Sbjct: 1058 DFKSNATTPKSAGDCPDGLLRQMGAYAHALGQIYPDKEIRTAIIWTRMAQLMMLPHEVVT 1117 Query: 942 KAF 944 A Sbjct: 1118 DAL 1120 >gi|209543463|ref|YP_002275692.1| double-strand break repair helicase AddA [Gluconacetobacter diazotrophicus PAl 5] gi|209531140|gb|ACI51077.1| double-strand break repair helicase AddA [Gluconacetobacter diazotrophicus PAl 5] Length = 1185 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 235/960 (24%), Positives = 418/960 (43%), Gaps = 40/960 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G + + + +P + + + E + + KA + Sbjct: 233 LMRVLGTR-GRDADAVRRAACAVP--DEERLRGMLRIVAEQASTAVRAKAVAMLDWMALA 289 Query: 61 CIEER--FSLLSSFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 + + + Q P++ + + ++ P + + L + I + + Sbjct: 290 PDARAAQWDAWRAALVKQDGEPRRRGGLNAKFDETQPQIGDALLAEAERIIAVDEECRAI 349 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 + + + A L +A + Y E K+ ++D++DLI T DLLK + W+ YK+D I Sbjct: 350 AILRVSQALLDVAVPVLHRYGERKRGRGLVDYDDLIERTLDLLKDPGAA-WVLYKLDGGI 408 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP---RTLFAVGDEKQSIYSFHGAEP 234 +H+L+DEVQDTS QW + LT +FF G H RTLFAVGD KQSIYSF GA+P Sbjct: 409 DHLLLDEVQDTSPDQWAIAGGLTSEFFAGAGAHDDGAPPRTLFAVGDYKQSIYSFQGADP 468 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 ++ +++ +AG+ + L +SFRSTA +L +VD VFS+P+ A+GL E Sbjct: 469 AAFRHWRQRFRRQVEDAGRMWKEPALTVSFRSTAPVLRLVDSVFSLPDAARGLVEPGGGV 528 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 H S+R GQ G V+LW + W + ++ Q ++A LA +A I Sbjct: 529 PGHLSARPGQGGRVELWPLTPI---DEAGEDANPWAAPRENEGQSTAAQRLADSLAAWIV 585 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + D+LVLV +R + + L R LK + V R L D Sbjct: 586 AELRRPPEPGQA---PLTPGDVLVLVPRRSN--FVRALIRALKTQ-DVPVATLVRTGLVD 639 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 +A++DLMAL +L +DDL+ C+L SPL S+D + + R + + + Sbjct: 640 QVAVQDLMALCDALLLPQDDLTLACVLTSPLGGVSDDGVMDLAVGRGDRPLW--AVLRDR 697 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + ++ + L + SP+ + LG GR + ++R G E + +DE L+ Sbjct: 698 HAERPDWRAAWTMLDALFRRVDYASPYGLLSEALGPLGGRARLLARLGPEAAEPVDELLS 757 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 LR E +SLQ + L T+KR A + VR+MT H AKGL++ +V L DT Sbjct: 758 AALRYESLHPASLQGFLHWLRASQETVKREPDAAADMVRVMTAHGAKGLQARLVILPDT- 816 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 V + K + +P+W+P+++ + L + ++ + EEYNRLLYV Sbjct: 817 --VGTAKFDGGLVWARDQPSGLDLPLWVPRAEMGIGVTRALQQTIRAAAIEEYNRLLYVA 874 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +TRASD+L++C + ++ +ER + + E Sbjct: 875 LTRASDRLVVCGWQQKRMVTDESWYMLCRRGFEQAGAEERPFDLGWEGTRLVLEEAPARL 934 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 S + + P + +P + L PS D ++ Sbjct: 935 SGAPAAPRSRPEPPAVALPAWMGRAPDWIATPPSAEAKLLRPLVPSRPDDAPLGPQPAVR 994 Query: 775 SD------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 S Q +G ++H LLQ + P R + ++ A E Sbjct: 995 SPLAIARARRPAAREQALRKGQLVHALLQYLPDRPAADRARVARDWLSRTGHGLDAAEQA 1054 Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882 + + ++++P M S +E ++G +I G++D++ + ++ + + Sbjct: 1055 RIAAQVLAVMDDPAMAPLFGPGSRAEQPLAGIA----GGAVIVGQVDRMMVRPGDVLLCD 1110 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 +KT+ P + +P ++ Q++ Y +L YP++ + C L++ + ++ +P + L + Sbjct: 1111 FKTNRQPPDDAASVPVLYLRQMASYRALLGALYPDRPVRCTLVWTEDVRIMPLPDSLLAQ 1170 >gi|146278983|ref|YP_001169142.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17025] gi|145557224|gb|ABP71837.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17025] Length = 1119 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 232/956 (24%), Positives = 397/956 (41%), Gaps = 66/956 (6%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + +G++ + + ++ + ++ ++E G+ K A L+ S + Sbjct: 223 RALYGVTGG--ADELLAQVFLGGE---EEWMPGLTAALEAGSANDQKAAAKLRLLSFSAP 277 Query: 62 IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115 + L LT + + T+ L ++L+ R Sbjct: 278 TTATLAGLEGVLLTGASAKEPYTAKIGSFPTKATRGALGPLADRLEALMRRVEAARPVRC 337 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + A YE K LDF+DLI LL V+ W+ +++D Sbjct: 338 CLLAAERARLIHAFAGVFLPLYEARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDG 397 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VI L ++F G+ RT+F VGD+KQSIYSF GA+ Sbjct: 398 GIDHILVDEAQDTSPDQWKVIELLAQEFTAGRGAREVERTIFVVGDKKQSIYSFQGADVA 457 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 R + +R A ++ ++L SFRS+ IL +VD F +D + Sbjct: 458 AFDRMRAEFGERLAGAERRLEELDLLHSFRSSPTILRLVDLTFDERRR-----QDLGGEV 512 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 RH + R G +LW V ++ P+ E+W D + E A+ LAR++A I Sbjct: 513 RHIAFRSDMPGRAELWPLV----EAATEPEPENWFDPVDLVSDEHHAARLARQVAARIRA 568 Query: 356 MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 MI I G R + A D L+LV++R D + + R K + ++ + G DR L Sbjct: 569 MIEEGVQIPQPGGFRPVAAGDFLILVQRRSD--IFGEIIRACK-EARLPIAGADRLKLGA 625 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA++DL AL F+ + EDDLS +L+SPLF +SE ++F + R Y+ + Sbjct: 626 ELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEAELFDLAHGRE------GYLWRRL 679 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + + + +L A F P D L GR++ ++R G E D +DE L+ Sbjct: 680 REREATHPETVAILRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLS 739 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L E+ SL ++ L+ +KR A +R+MTVH +KGLE+P+V L DT Sbjct: 740 QALAYERTDVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTA 799 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + +H + + D G +W + ++ + + E RLLYV Sbjct: 800 DR-KPREHDEIFTL------DCGARVWKTPAPESPPQIAAAREARRARDAAENLRLLYVA 852 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA LI K + W+D++ ++ T + + +W A Sbjct: 853 MTRAQCWLIAAAAG-----KLESGGAWHDLIRQGMEAAGAERRADGTLLLVEGDWPAPAP 907 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 PE +P + P +L PS + E+L Sbjct: 908 RPAAPEAG-------------RPALPGWARIHAAAPVAAPGLLLPSDLGGAKALPGEALP 954 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 ++ RG +H+LL+ + P + ++L + +L Sbjct: 955 TEL-ALARGSAVHRLLEHLPLHPPETWDEVARGLL------PDLGDLGDVLEEVRAVLSA 1007 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + A+ + EV V+ ++ + G ID++ + + +YKT+ VP E Sbjct: 1008 EDLGAALVPHALIEVQVTAEVA----GRRLFGTIDRLVVDPDRVLAVDYKTNMVVPARPE 1063 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 +P + Q+ Y + L YP++ + +++ + +P++ + A A +T Sbjct: 1064 EVPEGILRQMGAYAEALARIYPDREVETAILWTRTASLMRLPRDIVRSALARATTT 1119 >gi|110677844|ref|YP_680851.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh 114] gi|109453960|gb|ABG30165.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh 114] Length = 1125 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 230/956 (24%), Positives = 385/956 (40%), Gaps = 65/956 (6%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 F + + + I ++ + + + G K A L++ S Sbjct: 210 ALFDQPADLTAKHIEDQVFLGDEAAL--FDTLIPPMQAKGG-NDAKTAVKLKKISGLN-- 264 Query: 63 EERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 L FLT + + T+ D L RD Sbjct: 265 FSALPALEEIFLTGRKAKPPFRAKIGTLPTKPTQDVVSDAMPALDDFMCRVETARDARVG 324 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + T A A YEE K LDF+DLI LL DV+AW+ ++ID Sbjct: 325 LLAAQKTYALHRFAGSFLPLYEEQKTLRGWLDFDDLIDRARALLSDEDVAAWVLFRIDGG 384 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VIR L +F G+ RT+F VGD+KQSIYSF GA+P+ Sbjct: 385 IDHILVDEAQDTSPAQWDVIRKLAAEFTSGEGARQEVQRTVFVVGDKKQSIYSFQGADPR 444 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 R + + A Q F L SFRS + IL VVD+ F +A +++ Sbjct: 445 EFDRMQAEFASKIEAAEQLFQNKTLAFSFRSASAILGVVDRTFDGLTDAGFTTDE----- 499 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 +H + + G V +W V + Q + + +W D + ILA R+A I Sbjct: 500 QHIAFKQTLPGRVDIWPVV----EPQPSEEDRAWHDPIDRKAAHHHSVILAERVATQIKA 555 Query: 356 MIGTDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 MI DTI + +R +QA D L+LV++R + L T + R KN + + G DR Sbjct: 556 MIAHDTIPDEKRSDGKITRRPVQAGDFLILVQRR--SVLFTEIIRACKNK-DLDIAGADR 612 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + LA++DL AL F+ ED LS L+SPLF +SE ++F++ R ++ Sbjct: 613 LKVGGELAVRDLAALLSFLAVPEDSLSLASTLRSPLFGWSEKELFQLAHHREH-----DH 667 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529 + + + +K + +L F P+D IL GR+ ++R G E D + Sbjct: 668 LWQALRMRSDAYPETLKVLRDLRANVDFLRPYDLIERILTRHNGRRNLLARLGVEAEDGI 727 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + L+ L E+N+ SL + +E IKR + N++R+MTVH AKGLE+P+V Sbjct: 728 NALLSQALAYERNAVPSLTGFLVWMETDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVI 787 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L D+G + + + P+W + ++ + + + E R Sbjct: 788 LPDSGKRNNP--------VRDDIIILDDKPVWKTPANDTPGAMAAALDEIAAAQAAERLR 839 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV +TRA LI+ S + + + + ++ Sbjct: 840 LLYVALTRAEKWLIVAAAGELSKQNDT-----------WYQRVDAAVDAAGARLVDMHGL 888 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 E PL + +P + + E ++PS + Sbjct: 889 AVKRHQKGDWEALPLSEANQNTTVQATLDPCFTTRAPARAPLRE--TVSPSDLGGAKALP 946 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 E+ + G +H L+ + + + Sbjct: 947 GEAGQDEEAAKAYGTSVHLFLEHLSAADPSDWPALVDVL-----SDNGDPDLLRAASEAK 1001 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 +L++P + + DS +EV+V+ + + G ID++ +S + ++KT+ V Sbjct: 1002 TVLQDPNLAHLFTPDSLAEVAVTAEF----GSARLHGIIDRLVVSDTAVLAVDFKTNQTV 1057 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 P + P + Q+ Y LK YP++ + +++ + +P + + +A Sbjct: 1058 PSQPATCPEGILRQMGAYTHALKQVYPDRKIETAILWTRNCTLMHLPHDIVTQALQ 1113 >gi|163738014|ref|ZP_02145430.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] gi|161388630|gb|EDQ12983.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] Length = 1122 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 233/960 (24%), Positives = 400/960 (41%), Gaps = 66/960 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ F L +++ ++ +D+ +E G T K A L++ ++ Sbjct: 211 LRALFDLPAEFDAKMLEHSVYLGGE---ADLLTRTCSMLEQGGSTDAKAAAKLRKITEPT 267 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + +L S FLT K T+++ + + L ++L+ R + Sbjct: 268 LAD--LPVLESVFLTGASAKAPFTAKIKAFPTKKLRESNVALMDQLEPLMRRVEAARAQR 325 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + +L A Y+ K+ LDF+DLI+ LL V+AW+ Y++D Sbjct: 326 LALAAVEKSLILHDFAAVFLPEYDRRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLD 385 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS +QW+V+ L ++F G+ S RT+F VGD+KQSIYSF GA+ Sbjct: 386 GGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGAD 445 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P R + R G L SFRS+A IL +VD VF A Sbjct: 446 PDAFDRMQAEFADRLAETGSALQNAALEFSFRSSAAILGLVDLVFKDSPGAGF-----HR 500 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 HR+ + G V LW V ++ WT D ILA RIA I Sbjct: 501 DALHRAFKSELPGRVDLWPVVDKVDT----EEERDWTDPVDRPGARHHTVILAERIATAI 556 Query: 354 SNMIGT-------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 MI + ++R +QA D L+LV++R + L + + R K + + G Sbjct: 557 KEMIDGKVTLPEDGPERGSFRRRPVQAGDFLILVQRRSE--LFSEIIRACKAAR-LPIAG 613 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR + LA+KDL AL F+ + ED LS LKSPLF + E +F + +R + Sbjct: 614 ADRLKIGAELAVKDLAALLSFLATPEDSLSLAAALKSPLFGWDEQTLFDLAHRRDGGSYL 673 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 + ++ A +++ + I +L F P+D IL GRQ+ + R G E Sbjct: 674 WTALRDRA----AEYPDTMAIIDDLRSQTDFLRPYDLIERILTRHSGRQRLLGRLGPEAE 729 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D ++ L+ L E+ SL + ++ IKR A N +R+M+VH +KGLE+P Sbjct: 730 DGVNALLSQALAYERTDIPSLTGFLVWMQADDLEIKRQMGAAGNMIRVMSVHGSKGLEAP 789 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DT + + P+W S +++ + ++ + E Sbjct: 790 IVILPDTAKRKPPRD--------DEIMRAEAGPMWKLPSAQMPDVMQAARETAQEKARNE 841 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA LI+ S + S + + ++ N + + Sbjct: 842 RLRLLYVALTRAEKWLIVAAAGELSKDGDSWYQMVERALREAGANPYDTGYGEGL-RLQH 900 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +W + P T + +P+ L+PS + Sbjct: 901 GDWDGLPFHADPPVVTSAPQ------------LPEVFRQLPPPYQPPVPTLSPSELGGAK 948 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + ++ RG +H LL+ + + + + ++ +LL Sbjct: 949 ALPGDLGQDEDIAKARGSRLHSLLEHLPPADQDTWPQLANALLAGH------EDTADLLT 1002 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 T +L NP + + D+ +EV+++ + I G ID++ ++ + + ++K++ Sbjct: 1003 EATHVLTNPDLKAIFAPDTLAEVAITADL----DGRRIHGVIDRLIVTPERVQAIDFKSN 1058 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 VP +E P + Q+ Y L YP++ + L++ + +P + ++ A Sbjct: 1059 ATVPTSVETCPEGLLRQMGAYAHALAALYPDRRIDTALLWTRTATLMDLPHDIVSSALKR 1118 >gi|163732946|ref|ZP_02140390.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149] gi|161393481|gb|EDQ17806.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149] Length = 1125 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 232/956 (24%), Positives = 389/956 (40%), Gaps = 65/956 (6%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 F + + + I ++ + +N ++ + G K A LQQ S Sbjct: 210 ALFDQPADLTTQQIEDQVFLGGEAAL--LNALIAPMLAKGG-NDAKAAAKLQQISALN-- 264 Query: 63 EERFSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 L LT + T+ D RD Sbjct: 265 FRSLPALEQVCLTGPTAKSPFSAKIGTLPTKPTQAIVSDAMPAFDDFMGRIEIARDARIA 324 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + T A A YEE K LDF+DLI LL V+AW+ ++ID Sbjct: 325 LLAAQKTHALHRFAASFLPLYEEQKTLRGWLDFDDLIDRARALLNDEKVAAWVLFRIDGG 384 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VIR L +F G+ + RT+F VGD+KQSIYSF GA+P+ Sbjct: 385 IDHILVDEAQDTSPAQWDVIRKLAAEFTTGEGARTETQRTVFVVGDKKQSIYSFQGADPR 444 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 R + + + A Q F L SFRS + IL VVD+ F +A +++ Sbjct: 445 EFDRMQSEFESKIRAAEQLFQNKTLAFSFRSASAILDVVDRTFDGQGDAGFSTDE----- 499 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 +H + + G V +W + + Q + +W D + ILA RIA I Sbjct: 500 QHIAFKDTLPGRVDIWPVI----EPQPAEEDRAWHDPIDRKAAHHHSVILAERIATQIKA 555 Query: 356 MIGTDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 MI DTI + +R +QA D L+LV++R + L T + R K + + + G DR Sbjct: 556 MIARDTIPDDQHSDGEITRRPVQAGDFLILVQRR--SVLFTEIIRACK-NAGLDIAGADR 612 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + LA++DL AL F+ ED LS L+SPLF +SE ++F++ R + ++ Sbjct: 613 LKVGGELAVRDLAALLSFLAVPEDSLSLASALRSPLFGWSEKELFQLAHYRDK-----DH 667 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529 + + + +K + +L F P+D IL KGR+ ++R G E D + Sbjct: 668 LWQALRTQADAYPETLKVLRDLRANVDFLRPYDLIERILTRHKGRRNLLARLGVEAEDGI 727 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + L+ L E+N+ SL + +E IKR + N++R+MTVH AKGLE+P+V Sbjct: 728 NALLSQALAYERNAVPSLTGFLVWMETDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVI 787 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L D+G + + + G P+W + ++ + + + E R Sbjct: 788 LPDSGKRNNP--------VRDDIVTLNGKPVWKTPANDTPAALTTKLDDIAAAQAAERLR 839 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV +TRA LI+ S + + + + + ++ Sbjct: 840 LLYVALTRAEKWLIVAAAGELSKQNDT-----------WYQRVDAAVDAAGAHLVDTHGL 888 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + P+ + +P + + E ++PS + Sbjct: 889 AVKRHQKGDWDALPVTAANPGAPMQTALDPCLTTRAPARAPLRE--TVSPSDLGGAKALP 946 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 E+ + G +H L+ + I K Sbjct: 947 GEAGQDEEAAKAYGTSVHLFLEHLSAADTVDWPALIDILSNKGDPGL-----LRAASEAK 1001 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 +L+NP + + DS +EV+V+ + + G ID++ +S + ++KT+ V Sbjct: 1002 TVLQNPDLAHLFTADSLAEVAVTAEF----GTARLHGIIDRLIVSDTAVLAVDFKTNQTV 1057 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 P + P + Q+ Y LK YP++ + +++ + +P + + +A Sbjct: 1058 PSQPAACPEGILRQMGAYTHALKQVYPDRKIETAILWTRNCTLMHLPHDIVTQALQ 1113 >gi|221641019|ref|YP_002527281.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131] gi|221161800|gb|ACM02780.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131] Length = 1106 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 221/956 (23%), Positives = 382/956 (39%), Gaps = 65/956 (6%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + +G+ E + ++ + + ++E G+ K A L+ S Sbjct: 209 RALYGVEGGE--AALLAQVFLGGE---EEWMPALIAALEAGSANDQKAAAKLRLLSFAAP 263 Query: 62 IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115 + L LT + + T+ L ++L R Sbjct: 264 TTATLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRC 323 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + A Y+ K LDF+DLI LL V+ W+ +++D Sbjct: 324 CLLAAERARLIHAFAGVFLPLYQARKASRGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDG 383 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VI L ++F G+ RT+F VGD+KQSIYSF GA+ Sbjct: 384 GIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVA 443 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 R + +R A ++ ++L SFRS+ IL +VD F P + + Sbjct: 444 AFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRR-----QALGGEV 498 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 RH + R G +LW V + P+ E+W D + E A+ LAR++A I Sbjct: 499 RHIAFRGDMPGRAELWPLVEAA----EEPEPENWFDPVDLVSDEHHAARLARQVATRIRA 554 Query: 356 MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 MI I G R + A D L+LV++R D + + R K + ++ + G DR L Sbjct: 555 MIEAGVQIPQPGGFRPVAAGDFLILVQRRSD--IFGEIIRACK-EARLPIAGADRLKLGA 611 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA++DL AL F+ + EDDLS +L+SPLF +SE ++F + R Y+ + Sbjct: 612 ELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGRE------GYLWRRL 665 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + + + +L A F P D L GR++ ++R G E D +DE L+ Sbjct: 666 YDREAAHPGTVAILRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLS 725 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L E+ SL ++ L+ +KR A +R+MTVH +KGLE+P+V L DT Sbjct: 726 QALAYERTDVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTA 785 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + + + G +W + ++ + + E RLLYV Sbjct: 786 DRKPRERDEL-------FTLEGGARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVA 838 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA LI K W+D++ ++ +++ W Sbjct: 839 MTRAQCWLIAAAAG-----KLETGGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAP 893 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 + +L+PS + +++ Sbjct: 894 QASAAAAAARPVLPAWALAPAAEPPAAP------------EVLSPSALGGAKALPGDAMP 941 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 ++ G +H+LL+ + P + + +L +L Sbjct: 942 TEE-ALAHGSAVHRLLEHLPLHPPEGWEAAARGLL------PDLPDVAPVLAEARAVLSA 994 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + A+ + EV+V+ ++ +SG ID++ + + +YKT+ VP E Sbjct: 995 EHLAEALVPHALLEVAVTAEVA----GRRLSGTIDRLVVEPDRVLAVDYKTNRVVPDRPE 1050 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 +P + Q+ Y + L YP +++ +++ ++ +P++ + A +T Sbjct: 1051 EVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARLMRLPRDIVRSALVRATTT 1106 >gi|167648808|ref|YP_001686471.1| double-strand break repair helicase AddA [Caulobacter sp. K31] gi|167351238|gb|ABZ73973.1| double-strand break repair helicase AddA [Caulobacter sp. K31] Length = 1157 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 248/959 (25%), Positives = 418/959 (43%), Gaps = 55/959 (5%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 S E + + + + + G T +K A + A + L++ Sbjct: 230 SVEAVIAEA--MAELDRDLWRSIADVLLN-GTKTDIKCAGQM-MAVAADPHADLDQALAA 285 Query: 72 FFL-TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 F TP K DL+ +L Q+ + R+ ++ + + +L LA Sbjct: 286 LFTEKGAGTPATWPAKTSGLKSREDLRARLLAEQERLEEAREWLRAARVAEDSSDALRLA 345 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + K LDF DLI T LL ++ +AW+ YK+D I+HIL+DE QDT+ Sbjct: 346 GLYIQAHGVEKAARGALDFADLIDKTKVLLTQKVDAAWVLYKLDGGIDHILLDEAQDTAP 405 Query: 191 IQWEVIRSLTEDFFVGKNT----------HSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 QW ++R+LT DFF G+ RTLF VGDEKQSIYSF GA P+R+L E Sbjct: 406 EQWAILRALTSDFFAGEGAVRWRAEHSTQAQDARTLFVVGDEKQSIYSFQGAAPERLLAE 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS-TTTIRHRS 299 + + T+ G+ + L S+RST ++L+ VD +FS PE G+ + +RH+ Sbjct: 466 TQAYIAQITDVGRVGKHVPLITSYRSTVEVLSFVDALFSAPETRSGVPAPAGEDLVRHQP 525 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 RI G V LW ++E+W + D+ + + LA +IA I +I Sbjct: 526 FRIDHKGCVDLWPL----ERELPGEEREAWDAPLDAESEHGANRRLAEKIAVEIQALIRR 581 Query: 360 DTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + + + R DILVLVR+RK L + R LK + V G DR L+ H+ Sbjct: 582 GDVVFDKETREWRPAHPGDILVLVRRRK--ALFEEVLRALK-RRGVPVAGADRLSLSAHI 638 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 DL+ALGRF L +DDL+ +LKSP S+DD++ + + T++ + A Sbjct: 639 VFDDLLALGRFCLFPDDDLTLAALLKSPFCGLSDDDLYGL--AKGRQGTLWAALDARAVE 696 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVIDVLDE 531 K+ + + ++ P +F+ L+LG R + ++R G E + LDE Sbjct: 697 H-PKWTAAHALLRWALTESRRRQPFEFYALLLGRVDETTRSNRAKVLTRLGEEAAEALDE 755 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 FL L EQ L+ L+++ +KR EVR+MT H AKGLE+P+VFL Sbjct: 756 FLAQILAAEQRGVRDLEALVADFASLDIIVKREMEGARQEVRVMTAHGAKGLEAPIVFLP 815 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 +T + + P + D G +W + + + +K EE RL Sbjct: 816 ETTMKGGARGS-------PLMRTDQGGFLWCASKANDCEPSAMARERREKKDAEEALRLY 868 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV +TRA D+LI+C + + ++ + H + I+ Sbjct: 869 YVALTRARDRLILCGRIDARTKDETVGGWYAAARAAFAH----------PDIEPGVREIS 918 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 + + P +P + + PST++ + + + Sbjct: 919 EDGRLRFGPDPMRAEAAAPSAAPAPIPTPAWTLAPARPETPAARYAAPSTLEDEARGSAP 978 Query: 772 SLLSDNQTF---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 S L+ RG IIH+LLQ++ + R + ++ + + Sbjct: 979 SPLAAVSGLGRYRRGEIIHRLLQLLPDIEPMGRGTAANRLLAAE-RDLTDEQRGEMAAAA 1037 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +LE+ S +EVSV+G + ISGR+D++ ++ + + +YKT+ Sbjct: 1038 FGVLEDDRFAEVFGPGSRAEVSVAGGAAKLPPGLAISGRVDRLVVTPDRVLVVDYKTNRP 1097 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947 P IE +++Q+++Y +L + +P + + +++ PK+ +P+ + A A + Sbjct: 1098 SPARIEDADPAYLSQMAVYAAVLAEVFPGRPIEAAIVWTDGPKLMAVPEKVMAAALARL 1156 >gi|163742590|ref|ZP_02149976.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter gallaeciensis 2.10] gi|161384175|gb|EDQ08558.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter gallaeciensis 2.10] Length = 1122 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 233/960 (24%), Positives = 400/960 (41%), Gaps = 66/960 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ F L +++ ++ +D+ +E G T K A L++ ++ Sbjct: 211 LRALFDLPAEFDAKMLEHSVYLGGE---ADLLTRTCSMLEQGGSTDAKAAAKLRKITEPT 267 Query: 61 CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + +L S FLT T+++ + + L ++L+ R + Sbjct: 268 LAD--LPVLESVFLTGASAKAPFTAKINAFPTKKLRENNVALMDQLEPLMRRVEAARAQR 325 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + +L A Y+ K+ LDF+DLI+ LL V+AW+ Y++D Sbjct: 326 LALAAVEKSLILHDFAAVFLPEYDRRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLD 385 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233 I+HIL+DE QDTS +QW+V+ L ++F G+ S RT+F VGD+KQSIYSF GA+ Sbjct: 386 GGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGAD 445 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P R + R G L SFRS+A IL +VD VF A Sbjct: 446 PDAFDRMQAEFADRLAETGSALQNAALEFSFRSSAAILGLVDLVFKDSPGAGF-----HR 500 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 HR+ + G V LW V ++ WT D ILA RIA I Sbjct: 501 DALHRAFKSELPGRVDLWPVVDKVDT----EEERDWTDPVDRPGARHHTVILAERIATAI 556 Query: 354 SNMIGT-------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 MI + + ++R +QA D L+LV++R + L + + R K + + G Sbjct: 557 KEMIDSKVTLPEDGPERGSFRRRPVQAGDFLILVQRRSE--LFSEIIRACKAAR-LPIAG 613 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR + LA+KDL AL F+ + ED LS LKSPLF + E +F + +R + Sbjct: 614 ADRLKIGAELAVKDLAALLSFLATPEDSLSLAAALKSPLFGWDEQTLFDLAHRREGGSYL 673 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 + ++ A +++ + I +L F P+D IL GRQ+ + R G E Sbjct: 674 WTALRDRA----AEYPDTMAIIDDLRSQTDFLRPYDLIERILTRHSGRQRLLGRLGPEAE 729 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D ++ L+ L E+ SL + ++ IKR A N +R+M+VH +KGLE+P Sbjct: 730 DGVNALLSQALAYERADIPSLTGFLVWMQADDLEIKRQMGAAGNMIRVMSVHGSKGLEAP 789 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DT + + P+W S +++ + ++ Q E Sbjct: 790 IVILPDTAKRKPPRD--------DEIMRAEAGPMWKLPSAQMPDVMQAARETAQEKAQNE 841 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA LI+ S + S + + ++ N + + Sbjct: 842 RLRLLYVALTRAEKWLIVAAAGELSKDGDSWYQMVERALREAGANPYDTGYGEGL-RLQH 900 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +W + P T + +P+ L+PS + Sbjct: 901 GDWDGLPFHADPPVVTSAPQ------------LPEVFRQLPPPYQPPVPTLSPSELGGAK 948 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + ++ RG +H LL+ + + + + ++ +LL Sbjct: 949 ALPGDLGQDEDIAKARGSRLHSLLEHLPPADQDTWPQLANALLAGH------EDTADLLT 1002 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 T +L NP + + D+ +EV+++ + I G ID++ ++ + + ++K++ Sbjct: 1003 EATHVLTNPDLKAIFTPDTLAEVAITADL----DGRRIHGVIDRLIVTPERVQAIDFKSN 1058 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 VP +E P + Q+ Y L YP++ + L++ + +P + ++ A Sbjct: 1059 ATVPTSVETCPEGLLRQMGAYAHALAALYPDRRIDTALLWTCTATLMDLPHDIVSSALKR 1118 >gi|77462066|ref|YP_351570.1| UvrD/Rep family helicase [Rhodobacter sphaeroides 2.4.1] gi|77386484|gb|ABA77669.1| Helicase, UvrD/Rep family [Rhodobacter sphaeroides 2.4.1] Length = 1106 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 224/956 (23%), Positives = 389/956 (40%), Gaps = 65/956 (6%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + +G+ +E + ++ + + ++E G+ K A L+ S Sbjct: 209 RALYGVEGDE--AALLAQVFLGGE---EEWMPALIAALEAGSANDQKAAAKLRLLSFASP 263 Query: 62 IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115 + L LT + + T+ L ++L R Sbjct: 264 TTATLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRC 323 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + A Y+ K LDF+DLI LL V+ W+ +++D Sbjct: 324 CLLAAERARLIHAFAGVFLPLYQARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDG 383 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VI L ++F G+ RT+F VGD+KQSIYSF GA+ Sbjct: 384 GIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVA 443 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 R + +R A ++ ++L SFRS+ IL +VD F P + + Sbjct: 444 AFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRR-----QALGGEV 498 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 RH + R G +LW V + P+ E+W D + E A+ LAR++A I Sbjct: 499 RHIAFRGDMPGRAELWPLVEAA----EEPEPENWFDPVDLVSDEHHAARLARQVATRIRA 554 Query: 356 MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 MI I G R + A D L+LV++R D + + R K + ++ + G DR L Sbjct: 555 MIEAGVQIPHPGGFRPVAAGDFLILVQRRSD--IFGEIIRACK-EARLPIAGADRLKLGA 611 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA++DL AL F+ + EDDLS +L+SPLF +SE ++F + R Y+ + Sbjct: 612 ELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGRE------GYLWRRL 665 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + + + +L A F P D L GR++ ++R G E D +DE L+ Sbjct: 666 YDREAAHPGTVAILRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLS 725 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L E+ SL ++ L+ +KR A +R+MTVH +KGLE+P+V L DT Sbjct: 726 QALAYERTDVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTA 785 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + + + G +W + ++ + + E RLLYV Sbjct: 786 DRKPRERDEL-------FTLEGGARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVA 838 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA LI K W+D++ ++ +++ W Sbjct: 839 MTRAQCWLIAAAAG-----KLETGGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAP 893 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 + +P ++P P +L+PS + +++ Sbjct: 894 QA------------SAAAAAARPVLPGWAWAPATEPPAAPEVLSPSALGGAKALPGDAMP 941 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 ++ G +H+LL+ + P + + +L +L Sbjct: 942 TEE-ALAHGSAVHRLLEHLPLHPPEGWEAAARGLL------PDLPDVAPVLAEARAVLSA 994 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + A+ + EV+V+ ++ +SG ID++ + + +YKT+ VP E Sbjct: 995 EHLAEALVPHALLEVAVTAEVA----GRRLSGTIDRLVVEPDRVLAVDYKTNRVVPDRPE 1050 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 +P + Q+ Y + L YP +++ +++ ++ +P++ + A +T Sbjct: 1051 EVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARLMRLPRDIVRSALVRATTT 1106 >gi|302384281|ref|YP_003820104.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides ATCC 15264] gi|302194909|gb|ADL02481.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides ATCC 15264] Length = 1160 Score = 529 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 247/972 (25%), Positives = 438/972 (45%), Gaps = 65/972 (6%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 G + I D + + + ++ +M+ G+ T A+ + +A + Sbjct: 228 HALVGADPDRDVATIQNDF--MRFLDHGEWL-AMAEAMDRGSVTDQACAKRMWEADWS-- 282 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 F ++S FLT P+K++ T+ P+ ++ L QD+ + ++ + Sbjct: 283 ----FPEIASVFLT-SGAPRKSMATKS---APPEARDWLTTMQDKVVATLGEVRKARVAE 334 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 T LTLA+ A YE AK++ LDF DL+ T +LL R +AW+ +K+D I H+L Sbjct: 335 DTGHVLTLARAHGALYEAAKERRGALDFGDLVARTVELLTVRSSAAWVLFKLDGGIEHVL 394 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVG-----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 IDE QDT+ QW+++ +LTE FF G RT+FAVGDEKQSIYSF GA P+R Sbjct: 395 IDEAQDTAPEQWDIVEALTEGFFSGIGSKRYGAGKVERTVFAVGDEKQSIYSFQGARPER 454 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + +E + AG F+ +EL SFRST ++L+ VD VF PE + L ++ I Sbjct: 455 LRQESQRYDVMVRGAGAAFAGVELATSFRSTPEVLSFVDAVFVSPERTRSLVGETVGAIP 514 Query: 297 -HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H + R+ G + LW + P++++W D P +S+ +A +A I Sbjct: 515 AHIAKRVDDHGCIDLWPLYA----DEKPPERDAWDDPLDQEPVQSARKRMAADLAREIRR 570 Query: 356 MIGTDTIFSNGKKRVIQ---AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + + K R ++ D LVLVR+R + R +K + V G DR L Sbjct: 571 QVMAGVAVQDRKTRALRPCGYGDFLVLVRRRD--ATFEEIIRAMKA-VGVPVAGADRLKL 627 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED----DIFKICTQRHETETVYE 468 + H+A DL+A+ R L +D+LS +L+SPL + +D ++++ + + ++ Sbjct: 628 SSHIAFDDLIAVARVALYPDDELSLAGVLRSPLCDIPDDGAADSLYELAGADPKRKRLWA 687 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGN 523 +Q A + I + + P FF +L GR + ++R G Sbjct: 688 ALQARAGEH-PSWGRAHDLI-DFAIASSSRDPFAFFAGLLNRIDATGLSGRARILARLGR 745 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 E + +DE LN L EQ L+ +S LE +KR EVR+MTVH AKGL Sbjct: 746 EAEEAIDETLNQVLAAEQRGGIDLETCLSMLETADVEVKREMEGARGEVRVMTVHGAKGL 805 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E+PVV L DT ++ + + + + G + K + + Sbjct: 806 EAPVVILPDTTAKAKAQG--PTLMPVELDDGAEGWLMCPGSEKEDCEASGEARTARQTRV 863 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +E RLLYV +TRA D+++I + ++ ++ +W+ ++ ++F Sbjct: 864 DDETLRLLYVALTRARDRVVILGRGSAKSKLGYDEGSWWAVLTETFERLG---------- 913 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 + P+ + + +P + D + ++PS Sbjct: 914 ---GQVRDIGDGRRRFGVDPVVMAAGVASAIPGVTVPDWARAMPPVDPSA-RYVSPSQAK 969 Query: 764 TKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 + + S L+ F RG +IH LL+ + + R + + + Sbjct: 970 AVKRVSAPSPLAVAGADGGAPLGRFRRGDLIHLLLERLPEIEAAARPDAPRRMLARE-RD 1028 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875 + ++ + +LE+ + S +EV+++G + ISGRID++ ++ Sbjct: 1029 LSEAQRDEMIAAAFAVLEDARFSAVFGAGSRAEVALTGSAPGLPAGVSISGRIDRLVVTP 1088 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + + + +YKT+ P IE ++AQ+++Y +LK YP++ + L++ P++ + Sbjct: 1089 ERVLVVDYKTNRPAPDRIEDADPAYVAQMAVYVAVLKRLYPDRPVEAALVWTDGPRLMAV 1148 Query: 936 PQNKLNKAFAEI 947 PQ +++A A + Sbjct: 1149 PQGVMDEALAGL 1160 >gi|162146539|ref|YP_001600998.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] gi|161785114|emb|CAP54658.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] Length = 1184 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 236/958 (24%), Positives = 410/958 (42%), Gaps = 39/958 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L G + + + +P + + + E + + KA + Sbjct: 233 LMRVLGTR-GRDADAVRRAACAVP--DEERLRGMLRIVAEQASTAVRAKAVAMLDWMALA 289 Query: 61 CIEERFSLLSSFFLTQKF--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + T T+ K+S L + I + + Sbjct: 290 PDARAAQWTRGARPCEAGRRTAPPGRPTRNSTKRSRRSATPLLAEAERIIAVDEECRAIA 349 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + + A L +A + Y E K+ ++D++DLI T DLLK + W+ YK+D I+ Sbjct: 350 ILRVSQALLDVAVPVLHRYGERKRGRGLVDYDDLIERTLDLLKDPGAA-WVLYKLDGGID 408 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP---RTLFAVGDEKQSIYSFHGAEPK 235 H+L+DEVQDTS QW + LT +FF G H RTLFAVGD KQSIYSF GA+P Sbjct: 409 HLLLDEVQDTSPDQWAIAGGLTSEFFAGAGAHDDGAPPRTLFAVGDYKQSIYSFQGADPA 468 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 ++ +++ +AG+ + L +SFRSTA +L +VD VFS+P+ A+GL E Sbjct: 469 AFRHWRQRFRRQVEDAGRMWKEPALTVSFRSTAPVLRLVDSVFSLPDAARGLVEPGGGVP 528 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H S+R GQ G V+LW + W + ++ Q ++A LA +A I Sbjct: 529 GHLSARPGQGGRVELWPLTPI---DEAGEDANPWAAPRENAGQSTAAQRLADSLAAWIVA 585 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + + D+LVLV +R + + L R LK + V R L D Sbjct: 586 ELRRPPEPGQA---PLTPGDVLVLVPRRSN--FVRALIRALKTQ-DVPVATLVRTGLVDQ 639 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 +A++DLMAL +L +DDL+ C+L SPL S+D + + R + + + + Sbjct: 640 VAVQDLMALCDALLLPQDDLTLACVLTSPLGGVSDDGVMDLAVGRGDRPLW--AVLRDRH 697 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535 ++ + L + SP+ + LG GR + ++R G E + +DE L+ Sbjct: 698 AERPDWRAAWTMLDALFRRVDYASPYGLLSEALGPLGGRARLLARLGPEAAEPVDELLSA 757 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 LR E +SLQ + L T+KR A + VR+MT H AKGL++ +V L DT Sbjct: 758 ALRYESLHPASLQGFLHWLRASQETVKREPDAAADMVRVMTAHGAKGLQARLVILPDT-- 815 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 V + K + +P+W+P+++ + L + ++ + EEYNRLLYV + Sbjct: 816 -VGTAKFDGGLVWARDQPSGLDLPLWVPRAEMGIGVTRALQQTIRAAAIEEYNRLLYVAL 874 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRASD+L++C + ++ +ER + + E S Sbjct: 875 TRASDRLVVCGWQQKRMVTDESWYMLCRRGFEQAGAEERPFDLGWEGTRLVLEEAPARLS 934 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 + + P + +P + L PS D ++ S Sbjct: 935 GAPAAPRSRPEPPAVALPAWMGRAPDWIATPPSAEAKLLRPLVPSRPDDAPLGPQPAVRS 994 Query: 776 D------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 Q +G ++H LLQ + P R + ++ A E Sbjct: 995 PLAIARARRPAAREQALRKGQLVHALLQYLPDRPAADRARVARDWLSRTGHGLDAAEQAR 1054 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 + + ++++P M S +E ++G +I G++D++ + ++ + ++ Sbjct: 1055 IAAQVLAVMDDPAMAPLFGPGSRAEQPLAGIA----GGAVIVGQVDRMMVRPGDVLLCDF 1110 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 KT+ P + +P ++ Q++ Y +L YP++ + C L++ + ++ +P + L Sbjct: 1111 KTNRQPPDDAASVPVLYLRQMASYHALLGALYPDRPVRCTLVWTEDVRIMPLPDSLLA 1168 >gi|330991806|ref|ZP_08315755.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp. SXCC-1] gi|329760827|gb|EGG77322.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp. SXCC-1] Length = 1194 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 239/969 (24%), Positives = 428/969 (44%), Gaps = 51/969 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L + G+ S E + + + G+PT+ A+T+ Sbjct: 239 LMHLLGI-SGRSAEDVLCRACA-TIPDEDALRDGLRFVARNGSPTVRALAETMLAWLGQD 296 Query: 61 CIEER--FSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 + LTQK P+ + + ++ + L +L I I + Sbjct: 297 TAARAADWPTWRGSLLTQKGEPRQRGGLNIKLAAECSGLVGQLGAEAARVIGIDRQLRAI 356 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 +F+ T A L++A+ + Y K ++D++DLI T LL + W+ YK+D I Sbjct: 357 TVFELTCALLSVAQPVLERYATRKSAQGMVDYDDLIDRTLQLLDDPGAA-WVLYKLDGGI 415 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS---PRTLFAVGDEKQSIYSFHGAEP 234 +H+L+DEVQDTS QW + LT +FF G+ TH PRT+FAVGD KQSIYSF GA+P Sbjct: 416 DHLLLDEVQDTSPDQWAIAGGLTAEFFAGEGTHDDEGCPRTIFAVGDYKQSIYSFQGADP 475 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + ++ ++RA A + L +SFRSTA +L +VD VF+ P A+G+ E Sbjct: 476 EAFRAWRQRFRRRAGAAQALWREPALTVSFRSTAPVLKLVDSVFANPAAARGVVEPEGGI 535 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 H ++R GQ G V++W V + W + + Q ++ LA +A I+ Sbjct: 536 PAHVTARPGQGGRVEIWPPVPVEASGMDV---SPWMAPRHNAGQSTAQQRLADTLAGWIA 592 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + D+L+LV +R + L R LK + + V R +LTD Sbjct: 593 AQLRKAPAPGEA---ALAPGDVLILVPRR--SAFARALIRALKT-HDVPVATLVRTVLTD 646 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA++DLMAL +L +DDL+ C+L SP+ +D + + + + Sbjct: 647 QLAVRDLMALCAALLLPQDDLTLACVLTSPIGGLDDDSLMPL--ATGRNGQPLWAVLRAR 704 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + + ++ L + +P+ LG GR + ++R G E ++ +DE L+ Sbjct: 705 HAERPDWAAAWHILNTLFRQVDYATPYQLLAEALGPLGGRARLLARLGPEAVEPVDELLS 764 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 LR E+ SLQ + L T++ A+ N VR+MT H AKGL++ +V L DT Sbjct: 765 AALRFEEAHAISLQGFLHWLNASDETVRHEPDASANMVRVMTAHGAKGLQARLVILPDTI 824 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + + + IP+W+P+ + ++ + L + ++ + EEYNRLLYV Sbjct: 825 ATP---RSDTNILWAADDVTGLDIPVWVPRRELATDVTAGLQEQIRLNAAEEYNRLLYVA 881 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +TRASD+L+IC + WYD+ F + + + + Sbjct: 882 LTRASDRLVICGW---EPGRGVPDGCWYDLCRQGFESAGATAQPFDLGWEGETLVLEEAR 938 Query: 715 STHHPENTPLEREETIKQLMDEQKIP-----------------KKLFSPIKNDI----NE 753 + P + + + + +P + D + Sbjct: 939 VSSLPAAPSPCADHAPDRPVPLPDWMGHAPLWRPVMPVAEGPLARPLAPSRPDDVALGPQ 998 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813 P + +P + + + S + RG ++H LLQ + P +R ++ + A Sbjct: 999 PAVRSPLAAASTVRARADREASRARALQRGQLVHALLQYLPDCPVSRRAELADAWLARPA 1058 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873 + L+ + +++ P + + S +E ++G + +I G++D++++ Sbjct: 1059 AGLAPAQRGELVAQVLAVMDQPALAALFAPGSRAEQPLAGVV----GQQVIVGQVDRMAV 1114 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + + ++KT+ H PQ I+ P ++ Q++ Y +L+ YP + +VC L++ +V Sbjct: 1115 DAGTVTVCDFKTNRHPPQSIDRTPVLYLRQMAAYRALLRGVYPGRQVVCALVWTEGVRVD 1174 Query: 934 IIPQNKLNK 942 I+P L++ Sbjct: 1175 ILPATLLDR 1183 >gi|296448609|ref|ZP_06890479.1| double-strand break repair helicase AddA [Methylosinus trichosporium OB3b] gi|296253881|gb|EFH01038.1| double-strand break repair helicase AddA [Methylosinus trichosporium OB3b] Length = 1145 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 245/961 (25%), Positives = 433/961 (45%), Gaps = 45/961 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ GL+ E+ I ++ D + ++ ++ G K L A+Q+ Sbjct: 220 LRRHLGLAEGETLAAIEAEILEG-GLPSRDWPE-LAQTLRRGGANDGKLGDALAAAAQSG 277 Query: 61 CIEERFSLLSSFFLTQKFTPQKN----IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 I++ + F TQK P+ + II+ + K+ P L +L+ +D + + +R Sbjct: 278 DIDDYLA----VFFTQKGEPRGSGKQKIISAGLQKQQPALLARLEDERDRLVALIERRKA 333 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 F ++A + + + YE K + DF+DLI T LL + W+ YK+D + Sbjct: 334 AAAFDRSMALAAIGDAILSDYERMKSNRGLFDFDDLIERTRRLLLRSSAG-WVLYKLDSQ 392 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 I+HIL+DE QDTS QW+++ +L +F G + + R+ FAVGDEKQSI+SF GA P++ Sbjct: 393 IDHILVDEAQDTSAAQWDILAALAAEFCAGASARRAARSFFAVGDEKQSIFSFQGAAPEK 452 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +R+ R +A F + L SFRS+ D+L VD +F+ N +GLS D Sbjct: 453 FDAMRRVFAGRFRDARMSFETVRLTRSFRSSPDVLAAVDDIFAHEGNRRGLSADPQEPAP 512 Query: 297 -HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H + + G V++WE + W D + + A+ LAR+IA Sbjct: 513 QHEAWKADVRGRVEIWEP----ESADVAEAPPDWRLPLDYVNDATPAARLARKIARRTKA 568 Query: 356 MI---GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 ++ + + G R ++ D+++LVRKR + R LK + ++V G DR L Sbjct: 569 LLAPENGECVEDKGAIRAMRPGDVMILVRKRD--AFFEAVIRALKAE-GVAVAGADRLDL 625 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 + H+A+ DL+ALGR L +EDDL+ +LKSPL +DD+ + + ++++ Sbjct: 626 SGHIAVMDLVALGRAALLREDDLTLAVLLKSPLVGLDDDDLIAL--APGRSGSLHDA--- 680 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532 A + I +A+ +P DF++L LGA GR++ ++R G E D +DEF Sbjct: 681 LAASPQPRHAEAAALIAHWSRLARTLAPFDFYSLALGAGGGREKLVARLGVEANDAIDEF 740 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 L E+ +L ++ +E +IKR + VR+MTVH AKGLE+ VVFL D Sbjct: 741 LRLASAFEREQAQTLTGFLASVEALELSIKRDMEQAGDAVRVMTVHAAKGLEAKVVFLPD 800 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 T H K + +D +W + V+ + L+++ ++E+ RLLY Sbjct: 801 TCGAPAGHHDPKLFVL---GEEDEAALVWSTGKDADPPAVARARETLREAARDEHRRLLY 857 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA ++L I + WYD + D+ + K+ + Sbjct: 858 VALTRAEERLYIAGFHGPRGR---AEDCWYDAIRDALE--PSCARAPDPFEATKEILVRG 912 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + + TP E + L P S + L + + Sbjct: 913 DAARGRVQATPAREERVV--LPAYALQPAPRESAPAPPLRPVTALAAADRIPVADEYAST 970 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 D + G + H LLQ + P +R+ + A + + + + ++ Sbjct: 971 TRQDGERLLIGRLTHALLQRLPDTPPERREAAARKFLELRAVSLDEAQRERVARAALAVI 1030 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH--HHVP 890 + + S EV + ++ + +I ++GRID+++ + + ++KT + P Sbjct: 1031 ADRSLVALFGPRSAPEVEIVARLMGSRGEIAVTGRIDRLAETDSEAIVADFKTGAARNPP 1090 Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + QL++Y YP K++ C+L++ + ++L+ A E+ T Sbjct: 1091 SRTQ------LRQLAVYRAAAAQLYPGKTIRCVLVFTETATIVEPTPSELDAALEEVLTN 1144 Query: 951 I 951 + Sbjct: 1145 L 1145 >gi|89067401|ref|ZP_01154914.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola granulosus HTCC2516] gi|89046970|gb|EAR53024.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola granulosus HTCC2516] Length = 1119 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 239/959 (24%), Positives = 379/959 (39%), Gaps = 64/959 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + I + V + V G K A L + Sbjct: 204 LAAGFGAATGLTAAGIVRSHL---GADVITLLGEVHRVCLGGGKNDTKAADKLAPLLGKR 260 Query: 61 C-IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 F +L FLT T+ + +L +L IR Sbjct: 261 EMDIPAFHVLCDVFLTGGKAKAPYSAKLTGFPTKAVRGSCAELMGRLDPVMQTVEDIRPA 320 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 ++ T A A +E K +LDF+DLI+ T LL+ R ++ W+ +++ Sbjct: 321 VIAQLAYERTRALYAFATPFCRAFETKKLSRGLLDFDDLILKTRALLEDRALAQWVLFRL 380 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGA 232 D I+HIL+DE QDTS QW VI LT++ G+ RTLF VGD+KQSIYSF GA Sbjct: 381 DGGIDHILVDEAQDTSPDQWRVIERLTDELAAGRGAGEDRERTLFVVGDKKQSIYSFQGA 440 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + ++ + R G K L SFRS A IL +VD F L E Sbjct: 441 DAEMFEAKRELFTDRLATGGGKLHSQPLQFSFRSAAAILQLVDATFQ-----GDLREGLD 495 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + HR+ + G V LW + + W D + ++ LARR+A Sbjct: 496 PVVYHRTFKTELPGRVDLWPVEPEAEKTDTDA---PWYKPVDHVSEQHHDVKLARRVAEQ 552 Query: 353 ISNMIGTDTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I +I K +R I DIL+LV++R + L + R K + + G Sbjct: 553 IQTLINRKATIPVEKGGRILRRPIHEGDILILVQRR--STLFAEIIRACK-KLGLRIAGA 609 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 DR + LA++DL AL RF+ EDDLS L+SPLF ++E ++F + R ++ Sbjct: 610 DRLRVGAELAVRDLAALLRFLALPEDDLSLAAALRSPLFGWTEQELFTLAHHRR--GLLW 667 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527 ++ +K + +L F P+D + IL GRQ+ + R G E D Sbjct: 668 SALRD-----SDDHPETLKTLRDLRAQTDFLRPYDLLSRILIRHGGRQKLLDRLGAEAED 722 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 +D L L E+++ SL +S +E +KR +R+MT+H AKGLE+PV Sbjct: 723 GIDALLAQALAYERSTVPSLTGFLSWMETEDVEVKRQMDEQGERIRVMTIHGAKGLEAPV 782 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V L +TG + + + + W P + + D L ++ + E Sbjct: 783 VILPETGVRQTQSDTRSAIWPL------EDVVAWRPSTDRLPAALQDARAKLVEAEERER 836 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RLLYV +TRA LI+C E +WY MV + + + Sbjct: 837 RRLLYVALTRAEKWLIVCGAGKIGKEVG---DSWYGMVEAGLERLGALPHPQPGGDGLRY 893 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + P F+P+ L+PS + Sbjct: 894 ETGDWSAPDLAPPEPDAAEPVAPPN-----------FAPVALPPAALQTLSPSDLGGAKV 942 Query: 768 TNL-ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + RG +H LL+ + +R N S PA E ++LL Sbjct: 943 LPGDPAGGDREAALERGNQVHLLLEHLPGTLPLERANVALSLF----PDLPAPERQSLLT 998 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKT 885 +L P + +EV V+ + + G ID + + + ++KT Sbjct: 999 DAEAVLSAPGLAELFEKG-LAEVPVTATL-AELNGARLHGTIDLLI--PGEPLRVIDFKT 1054 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 + VP+ E +P + Q+ Y L YP +++ +++ S ++ +P + + A Sbjct: 1055 NRLVPKTPEEVPEGLLRQMGAYAAALGQIYPGRAIETAILWTSTAELMPLPHSLVIAAL 1113 >gi|254420948|ref|ZP_05034672.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] gi|196187125|gb|EDX82101.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] Length = 1139 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 248/948 (26%), Positives = 428/948 (45%), Gaps = 41/948 (4%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G + E + +D + + ++ N+ ++ +METG+ K A + A Sbjct: 223 GAEPDRGPEELEQDF--VAWIDPAEWNR-MAEAMETGSTNDRKIADAMSVA---APPYAG 276 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 F+ L+ F TQ P+K++ T+ + + L Q +F+ R+ ++ T+ Sbjct: 277 FAALAGVFCTQAGEPRKSMGTKSAPQGA---VGWLLDLQTKFLAARESLRKARIADDTIK 333 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 LTLA+ A YE AK + LDF DL+ LL + +AW+ YK+D ++H+LIDE Sbjct: 334 VLTLARAHAAFYEAAKAQRGALDFPDLVARAAALLTRSGAAAWVLYKLDGGVDHVLIDEA 393 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ QW ++R+LT +F+ G +S RT+FAVGDEKQSIYSF GA P+R+ +E+ Sbjct: 394 QDTAPEQWAIVRALTGEFYSG---QTSGRTVFAVGDEKQSIYSFQGARPERLRQERADFL 450 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 A AG+ F+ EL S+RST ++L VD VF+ P+ + L+ RH +RIGQ Sbjct: 451 ALAEGAGEPFAGPELNTSYRSTEEVLAFVDAVFADPDRTRALTGPQGDIARHIPARIGQH 510 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 G + LW + + P+ E+W D S+ LAR +A I + + + Sbjct: 511 GAIDLWPLFL----DEPAPETEAWDDPVDQESVGSARKRLARDLAREIRRQVESGLAVFD 566 Query: 366 GKKRVIQ---AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + R ++ D +VLVR+R + R LK + + V G DR L+ H+ DL+ Sbjct: 567 SRTRELRPAGYGDYIVLVRRRD--ATFEEIIRALKTE-GVPVAGADRLKLSSHIVFDDLI 623 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 AL RF L +DDLS +L+SPL + ED ++ + + + + ++ Sbjct: 624 ALARFALFPDDDLSLAEVLRSPLCDVDEDGLYALAGRENRKAGQLWRDLRDRAHERPEWT 683 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVIDVLDEFLNFTL 537 + I A+ P FF+ L GR + ++R G E + +DE LN L Sbjct: 684 RARDALQAAIA-ARGGDPFAFFSQALNRVDDTGRSGRARILARLGREAEEAVDETLNQIL 742 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E L+ +++LE +KR EVR+MTVH AKGLE+P+V L DT + Sbjct: 743 AAENRGAIDLETCLAQLEAADVEVKRELEGARGEVRVMTVHGAKGLEAPIVILPDTTMKA 802 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + + + +K +D + T +E RLLYV +TR Sbjct: 803 KAQGPSLMPAVTLE-GEGEAWLMAPGSAKDDCPASADARAARQARTDDETLRLLYVALTR 861 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A D++I+ +++ + +W+ ++ ++F + T Sbjct: 862 ARDRVIVMGRASSRGAEP---GSWWSVIEETFDRLGEQVREVENGVRRFGVDPERRPVTT 918 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 P+ T + +P G + Sbjct: 919 APDRTTAALPIWATTPPPADAAARFAAPSRMEGSIRIPAPSPLARSAAG-------GASL 971 Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837 F RG +IH+LL+ + + R + + + ++ + +L++ Sbjct: 972 GRFRRGDLIHRLLERLPEIAPADRPDAARRLLARETD-LDDAQRGEMIAAAFSVLDDARF 1030 Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897 S +EV+++G + P + I+GRID++ ++ + + +YKT+ P ++ + Sbjct: 1031 APVFGPGSRAEVALTGALPGPS-SVAINGRIDRLVVTPDRVLVIDYKTNRPAPDALDRVD 1089 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 ++ Q ++Y +LK YP++ + L++ PK+ IPQ L+ A A Sbjct: 1090 PAYVLQAAVYVAVLKRLYPDRPVEAALVWTDGPKLMPIPQAMLDAALA 1137 >gi|296283899|ref|ZP_06861897.1| ATP-dependent exoDNAse beta subunit [Citromicrobium bathyomarinum JL354] Length = 1158 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 207/960 (21%), Positives = 395/960 (41%), Gaps = 54/960 (5%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 GL + S + ++ F + ++ + + A+ + + Sbjct: 213 LGLPSDFSEADLVRE-CADDRFDCGSLRACLATLQDWNTKSGRDAAEPISAWLAADPDQR 271 Query: 65 R--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 + + L + KN+ + K+ P + + Q IRD+F + + Sbjct: 272 LATLACFNGSLLVADGSKPKNLTN--LVKRDPTYEGNVAAVQASLDAIRDKFALLALAEY 329 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 +L L + ++EAK+ + ++DF+D I LL +++ WI YK+D+ +HIL+ Sbjct: 330 LTPALELGRRFALRWDEAKRVHGLVDFDDQIARAATLLGNSEMAQWIGYKLDRSFDHILV 389 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DE QDT+ QW +I +LT+DFF G + RT+F VGD KQ+I+ F G EP+ + ++ Sbjct: 390 DEAQDTNDSQWAIIDALTQDFFDGLGAAGARLRTIFVVGDYKQAIFGFQGTEPRLFVDKR 449 Query: 242 RINQKRATN------------------AGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 R + + + L +FRS+ IL VD+ + Sbjct: 450 EQYDARINSAIANAEALAHETREAPLVPLAPLARLGLERNFRSSQVILDFVDRAVAHV-- 507 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + + + G V LW + ++ +E + P+ Sbjct: 508 --GTQAMGMPGEEVQHTGEDRPGRVTLWAPIRAEESDDPEAVEEDGAETWLPAPER---- 561 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 +A RIA + + + G R DI++LVRKR + L + + Sbjct: 562 RMADRIAAQVKQWLEDGHPLTKGGTRRAGPGDIMILVRKR---RALAGLIVARLHAAGVP 618 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 V G DR L LA+KDL+A RF DDL +L SPL +S+DD+ + R ++ Sbjct: 619 VAGVDRLRLGAPLAVKDLLAALRFAAQPRDDLMLANLLVSPLGGWSQDDLLE-HGLRDKS 677 Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFG 522 ++++I++ + L+ + P +L G GR++ ++R G Sbjct: 678 VGLWDHIRR---SDAPLCMATADRLRALLARVDYEHPQALLHWLLTGPWDGRRKLVARLG 734 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 E D +DE + SLQ ++ + +KR + + + VR++T H +KG Sbjct: 735 REANDPIDELVGAAFAYCAEHTPSLQGFLNWFDASDEELKREAAGSGDAVRVLTAHGSKG 794 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 L++P+V L D + +D +P+ +++ V + K Sbjct: 795 LQAPIVILADATGNP---DRGPARAGELATDDGRTVPLPSLPKEAKAGPVVAAEEAKKAR 851 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 +EE+ RL+YV MTRA + L I S +K + +WY F ++ + +++ Sbjct: 852 EREEHWRLMYVAMTRAEEALYIGGALLPS-DKDVPEASWYAQAAALFDSEGGGEGEGVSD 910 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 I + + P +P+ + + P L PS Sbjct: 911 PIWGERHDLGTLADIAP------PAPDAASRAQRPALPEWATRAPAAEPSPPRPLAPSAA 964 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 N L + + RG +IH+LL+ + + R+ +++ A Sbjct: 965 GDDLAPNPPGLATGAEAAQRGTLIHRLLERMPDIAPEDREARGSAWLAAQAGDLSEGARA 1024 Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882 +L +L++P + + +EVS++ + + +++G++D++ ++++ + + + Sbjct: 1025 AMLEQALGVLDHPDFAALFAPGALAEVSLAATV----EGQVVTGKLDRLCVAEEEVLVVD 1080 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 YKT P +E +P + Q+S Y L YP + + L+Y P++ ++P L Sbjct: 1081 YKTTRRAPTSLEQVPTATLRQMSAYAHALAAIYPGRRICAALLYTQTPQLIVLPHAVLAA 1140 >gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC 49242] gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC 49242] Length = 1145 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 252/953 (26%), Positives = 412/953 (43%), Gaps = 50/953 (5%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70 E+ I K++ D ++ ++ G+ K A +L++A + + Sbjct: 230 ETLARIEKEIVEGGE-PWPDWP-ALAKALRGGSSNDGKLADSLERAYALAPHPDCIDIYL 287 Query: 71 SFFLTQKFTPQ----KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 S F TQK P+ IIT + K P L E++++ +D + ++ + ++A Sbjct: 288 SAFYTQKGEPRGAGKTKIITAGLVKGEPGLLERMEEERDRLAPLIEKRKAAATAERSMAL 347 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 +TL + Y AK+ +LD++DLI LL++ +W+ YK+D +I+HIL+DE Q Sbjct: 348 MTLGDAIVTEYSRAKRYRNLLDYDDLIEGARRLLQRSS-PSWVLYKLDSQIDHILLDEAQ 406 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DTS QW+++ ++ ++F G RT FAVGDEKQSI+SF GA P++ +R ++ Sbjct: 407 DTSAAQWDILTAIADEFCAGDGARHMARTFFAVGDEKQSIFSFQGAAPEKFDAMRRDFER 466 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR-HRSSRIGQV 305 R + F + L SFRS IL VD VF N GL+ D + H + + Sbjct: 467 RFRTVERLFRDVRLLQSFRSAKGILEAVDMVFGHAGNGAGLASDPLAGMPKHEAWKTDVQ 526 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG---TDTI 362 V++WE + S Q + W D + + A LA R+A I ++ + + Sbjct: 527 ALVEIWEPIGS----QNAEEPADWRLPLDYVEENDPAERLAGRVARKIKTLLAPDSGECV 582 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 G+ R ++A DIL+LVRKR P L R LK ++ + V G DR L DH+A+ DL+ Sbjct: 583 EDKGRLRPVEAGDILILVRKR--GPFFEALIRALKAEH-VPVAGADRLDLADHIAVNDLV 639 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 ALGR L EDDL+ +LKSPL F +DD+ + +R + N G + + Sbjct: 640 ALGRAALLVEDDLTLATVLKSPLIGFDDDDLISLAPRRTGSL-----FSALKNSGDERHR 694 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 H + I A +P DF+ ILG GR + ++R G E D +DEFL L E+ Sbjct: 695 HAAQTIDAWRRDAATLAPFDFYGRILGPGGGRTKLVARLGAEANDAIDEFLRLALTFERE 754 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 SL ++ +E +IKR A VR+MT H AKGLE+ +VFL DT Sbjct: 755 QAPSLTSFLAMVETLDLSIKRDMEAAGAAVRVMTAHAAKGLEAKIVFLPDTCGAPAGKHD 814 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 K + DD +W S + + + + E+ RLLYV +TRA ++L Sbjct: 815 PKLFRL---GEDDDVSLVWSLDKASDPAALGAARARHRDAERAEHQRLLYVALTRAEERL 871 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 I + + WY+ + D+ E Sbjct: 872 YIAGYH---GSRGPADGCWYNAIRDALEPACNAFADPFEPEG---------AILRLGEVP 919 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782 P +IP + + +I+ L PS+ + + Sbjct: 920 PRHDLARTVARESLVEIPAFAHTAARREIDPAPPLRPSSALAGADAFASGAAAAPNRRDA 979 Query: 783 -----GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837 G + H LLQ + T E +R+ + + + + ++E+P + Sbjct: 980 ERVLEGRLTHALLQHLPTCAEPRRRAAAERFLALRGEGLDDARRNAIAQAALAVIEDPGL 1039 Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897 S +EV + + + +SGRID+++ ++ + I ++KT Sbjct: 1040 ADLFGPQSAAEVDIVAAL---DNGLFVSGRIDRLAETENEVLIADFKTGRAREAPEPDQ- 1095 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + QL++Y + YP K L C L++ L+ AF + Sbjct: 1096 ---LRQLALYRAAIAPLYPGKRLRCFLVWTQTATAMEAQDAALDAAFERARER 1145 >gi|114769726|ref|ZP_01447336.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha proteobacterium HTCC2255] gi|114549431|gb|EAU52313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha proteobacterium HTCC2255] Length = 1125 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 244/963 (25%), Positives = 432/963 (44%), Gaps = 58/963 (6%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVS-----DINKYVSLSMETGNPTILKKAQTLQQA 56 + F ++ I +D+ F DI + ++TG+ +K A L++ Sbjct: 196 RTGFDIAPTPKDFGISQDISLDKIFNERINPHNDIINSLIELLKTGSKNDMKAADKLREY 255 Query: 57 SQTQCIEERFSLLSSFFLTQKFTP------QKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 + +L FL K ++N+ T ++ K+ + K + Sbjct: 256 FLDNTNNTKLKILEKVFLNGKTAKAGPYSAKENVATLKLIPKTHSFFDIQSKISKDVEAT 315 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 R + TL + A+ Y++ K N LD++DLI ++ LL ++ W+ Sbjct: 316 RKCRLAINAYNKTLVLHSFAQSFLKAYDKRKAFNAYLDYDDLINLSSKLLTSSSMAQWVL 375 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 Y++D ++HIL+DE QDTS QW VI L +F G + + PR+LF VGDEKQSIYSF Sbjct: 376 YRLDGGLDHILVDEAQDTSPAQWAVIDCLAREFTYGISANDRPRSLFIVGDEKQSIYSFQ 435 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+P +K + + Q EL SFRS IL++VD++F+ Sbjct: 436 GADPDIFSEKKSEFRDLFQHINQDMESRELLYSFRSAPKILSLVDQIFTD-------ENI 488 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 +H++ + G V LW + + Q P +E W D LAR IA Sbjct: 489 KNPKSKHKAFHDSKPGRVDLWPFI----EKQNQPDKEVWYRPVDMPAPNDPKQELARLIA 544 Query: 351 YTISNMIGT-DTIFSNGKKRVIQAKDILVLVRKR---KDTPLITFLTRFLKNDYKISVVG 406 +I ++ + TI + + R + DIL+LV+ R + L + + LK+ + V G Sbjct: 545 KSIKGILQSKQTINVDNELRPVNPGDILILVQGRETQSSSSLFKEILKELKS-SNLPVAG 603 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR + D LA++D+++L +F DDLS ++SPL +E+++FK T T+ Sbjct: 604 ADRLNVGDELAVRDILSLLQFANMANDDLSLAEAMRSPLLGLTENELFK--TAHKRQGTL 661 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 ++ ++ + + + + ++ + + P++ IL +GR++ ++R G+EV Sbjct: 662 WQSLRDQNHHT-----NALAILTDIRNQVGYLRPYELIERILTKHRGREKLLARLGSEVE 716 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D +DE L +L+ E +L + IKR N++R+MTVH +KGLESP Sbjct: 717 DGIDELLAQSLQYEALEPPTLSGFLQWFVSGEVEIKRDM-GKGNQIRVMTVHGSKGLESP 775 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L DTG + + +W + I ++ K +K+ +E Sbjct: 776 IVILPDTGDKSLPQNAQITLS--------NNSSVWRSTGDEGSEIQNNAEKVIKEKQTQE 827 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA LIIC NE+ +WY+++ + + K K Sbjct: 828 KMRLLYVALTRAESWLIICGAGTRKNER-----SWYNLIKGALVSLNASKNDF------K 876 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 D + ++ E+ + +E++ + + PK L K L PS + + Sbjct: 877 DIGEGLLFKDNNWESLSV-KEKSGELNTKKNTYPKWLMKNAKKIDRPKQTLAPSNLVGEK 935 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 S++ G I+HK+L+ + +P+++ + F+ + N + +L+L Sbjct: 936 TLQNTFNSSNSDAKELGKILHKILEFLPNIPKNQWEVFLNGFFESNNFGVSDEIKDSLIL 995 Query: 827 SITRLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 LLENP +T + + SEV ++ I +I+ G ID++ I + I ++K+ Sbjct: 996 EAISLLENPTLTYIFFTPNGLSEVGITSHIPQLNNNIL--GYIDRLIIDKDTITAIDFKS 1053 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 + +P E IP +AQ ++Y L+ YP ++ +++ +V I N + Sbjct: 1054 NVSIPISDEEIPKGILAQQAVYLLALQKIYPAYEIIIAILWTKTGEVMKISHNTAINSLD 1113 Query: 946 EIS 948 I Sbjct: 1114 AIQ 1116 >gi|296117285|ref|ZP_06835876.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii ATCC 23769] gi|295976178|gb|EFG82965.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii ATCC 23769] Length = 1208 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 232/964 (24%), Positives = 422/964 (43%), Gaps = 48/964 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ G+ +++ ++ +P + + + G+P + A + Sbjct: 258 LRRVLGVQGDDAAAIMRDACTDIPAED--ALRDGLRRVAQDGSPKVRVTAAGMLAWLGQD 315 Query: 61 C--IEERFSLLSSFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 + + Q P+K + ++KK P++ + L + + + Sbjct: 316 TNGRVACWDDWRQALVKQDGEPRKRGGVNATLDKKYPEIGDALMAEAQRVLDVEAQLRAI 375 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 + + A L++A + Y K ++D++DLI T +LL+ + W+ YK+D I Sbjct: 376 MVRDLSRALLSVAVPVLEGYATRKTGQGLVDYDDLIERTLELLRDPGAA-WVLYKLDGGI 434 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS---PRTLFAVGDEKQSIYSFHGAEP 234 +H+L+DEVQDTS QW + LT +FF G+ T PRT+FAVGD KQSIYSF GA+P Sbjct: 435 DHLLLDEVQDTSPEQWAIAGGLTAEFFAGEGTREHDGLPRTVFAVGDYKQSIYSFQGADP 494 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + R + +++A NA ++ L +SFRST +L +VD+VFSIP A+G++E + Sbjct: 495 EAFRRWREHFRRKARNAQARWREPALTVSFRSTTPVLALVDRVFSIPAAARGVAEPDSGI 554 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 H ++R G G V+LW D+ + W + + Q ++ LA +A I+ Sbjct: 555 PAHVTARPGGGGRVELWPITPGGDDATQA---DPWDAPTRNAGQSTAQQQLADTLAAWIA 611 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + D+L+LV +R + L R LK + V R +LTD Sbjct: 612 GELRRAPAPGQA---PLAPGDVLILVPRR--SAFARALIRALKTQ-DVPVATLVRTVLTD 665 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA++DLMAL +L +DDL+ C+L SPL +D + + T R + + Sbjct: 666 QLAVRDLMALCAALLLPQDDLTLACVLTSPLGGLDDDSLMHLSTARQGRPLW--AVLRAR 723 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + ++ + + L + SP+ + LG GR + ++R G E ++ +DE L+ Sbjct: 724 HGERPEWAAAWRMLDTLFGKVDYASPYALLSEALGPLGGRARLLARLGPEAVEPVDELLS 783 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 LR E+ SLQ + L T+K A + VR+MT H AKGL++ +V L DT Sbjct: 784 AALRFEEAHAVSLQGFLHWLHASEETVKHEPDAAADMVRVMTAHGAKGLQARLVILPDT- 842 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 V + + + + +P+W+P+ + + L LK + EEYNRLLYV Sbjct: 843 --VGTPRFDSGLLWVHDAQSGLDLPLWVPRRELGTGVTQALQDRLKLAAAEEYNRLLYVA 900 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +TRAS++L++C + + +WYD+ +F + + I + Sbjct: 901 LTRASERLVVCGW---EPRRGVPENSWYDLCRQAFVAQDARAEPFALGWPGDVLVIEEAY 957 Query: 715 STHHPENT-PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 + P P + P + L PS D ++ Sbjct: 958 APRSVAPPSPPVSRPDAPPPHWMGTAPDWIPVPPVVEGPLARPLAPSRPDDVALGPQPAV 1017 Query: 774 LSDNQ-----------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 S + RG ++H LLQ + +R + ++ Sbjct: 1018 RSPLEIARAGMGGQSAGTRRMNALRRGQMVHALLQYLPDCVPAERAQVARRWLSRRGSGL 1077 Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876 + + + ++E P M + +S +E ++G + + D+++++ Sbjct: 1078 STADCARIADQVMAVMETPAMVPLFASNSRAEQPLAGVVGDTVVVGQV----DRMAVTDD 1133 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + + ++KT+ P +E P ++ Q++ Y +L YP + + C+L++ +V ++P Sbjct: 1134 EVLLCDFKTNRQPPARVEETPVLYLRQMASYRALLCMLYPGRRVTCILVWTEGVRVSVLP 1193 Query: 937 QNKL 940 + Sbjct: 1194 DALV 1197 >gi|188584140|ref|YP_001927585.1| double-strand break repair helicase AddA [Methylobacterium populi BJ001] gi|179347638|gb|ACB83050.1| double-strand break repair helicase AddA [Methylobacterium populi BJ001] Length = 1147 Score = 521 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 261/952 (27%), Positives = 441/952 (46%), Gaps = 43/952 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L L+ S I + + + D V+ + TG T + A L +A Sbjct: 225 LPRALALADGASVATIERAILEGS--TLGDWR-AVAGRLRTGKATDERLADGLVEADAAL 281 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + + S F T K P+ K+ T+ + + ++K+ L Q I + D + Sbjct: 282 EAGKALAPYRSVFFTDKDEPRAAKSFGTKAVPE---EVKQALLDEQARLIPLFDSLRAAR 338 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 T LA ++ E K + LDF+DLI T DLL + ++W+ YK+D+ ++ Sbjct: 339 ALARTQGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 H+L+DE QDT+ QWE++R+LT +F G+ RT FAVGD KQSIYSF GA+P+ Sbjct: 398 HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297 +R ++ A A F+ + L LSFR+ + +L VD VF +PE+ GLS ++ T H Sbjct: 458 LTRRAWERAAKGAELDFADVSLRLSFRTASHVLAAVDAVFRVPEHFAGLSFEAGTPGTVH 517 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S+R G G V+LW + + +W + D+ + A + ARRIA + Sbjct: 518 ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVTARRIARAVKAWT 573 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + RV + D+L+LVRKR + + R LK + V G DR + H+A Sbjct: 574 TRG----DACGRVWRPGDVLILVRKR--SAAFEEVIRALK-GLGVPVAGQDRLEVAGHIA 626 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 + DL+A+GR L DDL+ LK+PL ++DD+ +IC +R +ET+ + + + A G Sbjct: 627 VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFSETLEDALTRHAEAG 686 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 + + + I +A P F+ +LG GR + ++R G E D +D FL Sbjct: 687 DAAAIRGLAALRLWIRLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAA 746 Query: 538 RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L+ +++ + ++KR A +EVR+MTVH AKGLE+PVV + Sbjct: 747 EAETGGDAPCLEAFLADYVVRPGRGRSGLSVKRDLEAGRDEVRVMTVHGAKGLEAPVVVV 806 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +D + ++ + + D P P+W L+ +EE+NRL Sbjct: 807 IDGCEPL--GRNDPPLLGLDPAADGPLPPVWTGGRTQDCAATLAARSALQARAREEHNRL 864 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV MTRA+D L+I + + E + +W +MV + T W Sbjct: 865 LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGPGEAIETEHGPITIWR 921 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768 ++ E + +P LFS + L+PS G+ Sbjct: 922 DGSAASLAAAAEATALPE-------PEAVPDWLFSNAAPEAEAAPPLSPSGALGAADGQR 974 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 + L D + RG ++H LL+ + + +R + A + +L+ S+ Sbjct: 975 QPQRRLGDAEARRRGALVHALLEHLPRIEPARRAEAAERFTRARAPALDEGKRTDLVRSV 1034 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 RL+E P + S + +EV++SG+I + ++GRID++ + + + ++KT Sbjct: 1035 LRLIETPDLAPLFSAQARAEVALSGRIVVDGVERDVTGRIDRLVVEDGRVILCDFKTGR- 1093 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 P + +P AQ+++Y ++ +P+ ++ LL++ S P V + ++L Sbjct: 1094 PPADDAPLPEREAAQVALYARLAAAIWPDHAITALLVWTSGPVVRRVEGSRL 1145 >gi|89056557|ref|YP_512008.1| UvrD/REP helicase [Jannaschia sp. CCS1] gi|88866106|gb|ABD56983.1| UvrD/REP helicase [Jannaschia sp. CCS1] Length = 1120 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 247/953 (25%), Positives = 401/953 (42%), Gaps = 51/953 (5%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G+S + + ++ +D+ + + ++ T +K Q L Sbjct: 211 GISPTLAEDDVFATALTGDE---ADLFQILRTHLDPTVKTQVKLGQDLAGLDLDTPTPAT 267 Query: 66 FSLLSSFFL-----TQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 L FL FTP+ I + ++ + + + + R + Sbjct: 268 LKELERIFLFGPTAKTPFTPKIDGIASAKVRTTIGNDMAAINDLAERVAEARTLRTGLET 327 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + T A A Y AK+ LDF+DLI T LL V+ W+ +++D I+H Sbjct: 328 ARKTHALHQFAARFLPAYARAKEARGWLDFDDLIDKTRALLSDTKVAQWVLFRLDGGIDH 387 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVL 238 IL+DE QDT+ QW++++ L EDF G+ + RT+F VGD+KQSIYSF GA+P Sbjct: 388 ILVDEAQDTAPRQWDIVQRLAEDFAAGEGARTDVQRTIFVVGDKKQSIYSFQGADPSEFD 447 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 R + + R F L SFRS A IL++VD+V A+ + I H+ Sbjct: 448 RMRAHFKARLDEIDAPFQDAALIHSFRSAAPILSLVDRV-----AAKLGAPGLGDHIEHK 502 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + + G V LW + + + +W D + ++ +S+LA+ +A I M+ Sbjct: 503 AFFDAKPGRVDLWPAI----EQVKGGDKPAWNDPQDLVSEDHHSSVLAQTVAAQIGAMVA 558 Query: 359 TDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + GK+R + A DIL+LVR R +PL + LK + V G DR LT LA Sbjct: 559 APPMIDVEGKRRALTAGDILILVRSR--SPLFHKIIAELK-RADLPVAGVDRSQLTSPLA 615 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 +KDLMAL RF+ + EDDLS C+L+SPL SE ++ + R ++ ++ Sbjct: 616 VKDLMALCRFLATPEDDLSLACVLRSPLCGLSEAQLYDLAHGRP--GFLWSAMRDR---- 669 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 IS F+ + +L A F P+D L GR++ I+R G E D +D L L Sbjct: 670 ISDFEDAHAILKDLRDSADFLKPYDLLERALIRHDGRRRLIARLGPEAEDAVDAMLAQAL 729 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E SL L+ +KR S ++R+MTVH AKGLE+PVV L D + Sbjct: 730 AYEATEVPSLTGFAGWLDSGDVQVKRDLSQAEGQIRVMTVHGAKGLEAPVVILPDCAQKQ 789 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + D IW P + V+D K+ EE NRLLYV +TR Sbjct: 790 GRGSSVSLLQP------DGAPLIWAPGKGDEVDAVTDAADLKKQREAEEANRLLYVALTR 843 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A LI+ + +WY +V D+ E +W+ Sbjct: 844 AETWLIVAASGQLGKGDDA---SWYKIVADAVAGMEAAALTVEGLEGTGLRLQTGDWA-- 898 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 E E +P +P + PS + Sbjct: 899 -------EGERPAHATKTRATLPDWATAPAPAPEKDKPARRPSDLGGAKALPG-MGDESA 950 Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837 RG I H LL+ + LP+ + +L TR+L P + Sbjct: 951 TAMQRGTITHLLLEHLPRLPQAAWPAAAPGIAALE-SDLSPEALAPMLEEATRVLTAPHL 1009 Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897 T + D+ +EV ++G D+I G ID++ ++ + ++KT+ VP E P Sbjct: 1010 THVFTQDTLAEVEIAGHSPTLNADMI--GIIDRLIVTPTRVTAVDFKTNATVPTAPEDTP 1067 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + Q+ Y ++L+ YP++ + +++ + +P + +++A ++ Sbjct: 1068 DGLLRQMGAYAELLQPIYPDRDITTAILWSRTATLMELPHDIVSQALRRATSA 1120 >gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] Length = 1151 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 245/943 (25%), Positives = 412/943 (43%), Gaps = 40/943 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI---LKKAQTLQQAS 57 L+ ++ I +D+ S ++ ++ +ETG T + Sbjct: 219 LRKALDVAPGRDVAAIRQDMLEG-GIAPSRWSE-LAAFLETGTKTDCDRAAAFRDAAARH 276 Query: 58 QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 E + F T K K ++T+ + K+ ++ L Q+ ++R + Sbjct: 277 AAGDSEGCRDVYLQIFFTDKGEKAKRLLTRGLAAKNLAIEAALYAEQERLDRLRAEEKSA 336 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 + + A L + A Y++ K + +LDF+DL+ T LL++ D ++W+ YK+D I Sbjct: 337 ATLERSAALGRLVDAIFARYQKLKYERVILDFDDLVAKTLTLLERSD-ASWVLYKLDAGI 395 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +HILIDE QDTS QW ++ L DF VG + +PRT FAVGDEKQSI+SF GA P Sbjct: 396 DHILIDEAQDTSEAQWRILEGLMADFAVGHGRNLAPRTFFAVGDEKQSIFSFQGAAPHMF 455 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 +R +++ N G++FS + L SFRS A +L VD VF E+ GL + + H Sbjct: 456 HEMQRKFERKFINGGERFSHVRLTHSFRSAAGVLGAVDSVFGRAESQSGLVAPADVWMGH 515 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + V++W V + + W D + S +A RIA I+ +I Sbjct: 516 EPLKT-LPSLVEIWPSV----GAGGKAENSDWRLPLDFRDESDPPSRVATRIAEKIAALI 570 Query: 358 -----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 +G R ++A DIL+LVR R P + R LK + V G DR L Sbjct: 571 EPRSGERVHDGESGVLRAVRAGDILILVRTR--GPFFEAVIRALKQK-GVPVAGADRLKL 627 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 +H+A++DL+A GR L EDDL+ LKSPL +DD+ + +++ + Sbjct: 628 GEHIAVQDLVAAGRAALLPEDDLNLAAALKSPLIGLDDDDLIAL--APGRPGSLFAALLA 685 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532 + + + P F+ +LG +GR+ R G E +D +DEF Sbjct: 686 SPDSRFRPARETLGR----WRARAAARPFAFYASLLGEDQGRRAIEGRLGVEAVDAVDEF 741 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 L L +E SL +++ E ++R + + VR+MTVH AKGLE+ +VFL D Sbjct: 742 LRLALAHEAEPAPSLAGFLADFETVQREVRRDMESGGDVVRVMTVHAAKGLEAKIVFLPD 801 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 T + S +H + + + +W P+ + + K L++ ++EY RLLY Sbjct: 802 TCGGL-SAQHDPSVFALEETHLGAAPVVWSPRKAEDCDKAAAARKRLRELAEDEYRRLLY 860 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA +++ IC KK + W +M+ E L + + Sbjct: 861 VALTRAEERIYICGFH---GAKKPPELCWANMI-------EATLAPTLQQAPAFWNVEEF 910 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 P +E P L + + PS+ Sbjct: 911 VLRRLSPGADLAVQETAAPVEGGSLIAPGWLSRRLDPLEEPAAPMRPSSA-LAASDRRAD 969 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 + G + H LLQ + P R +Y AK ++ LL + ++ Sbjct: 970 AAGRREALQLGSLTHILLQYLPDQPVEARARAGLAYLAVRAKGLDEAAHERLLQAALAVI 1029 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891 P + S +EV+V+GKI P + + GRID++ +S+ +++ ++KT Sbjct: 1030 AAPQLEPLFGAGSRAEVAVAGKIALPGGASVDVIGRIDRLGLSEGEVWVADFKTGAPPA- 1088 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 +P +++ Q+++Y L+ +P + L +LI+ P++ Sbjct: 1089 -PGEVPQSYLTQMALYRAALRPLWPERRLRMILIFTEGPQIIE 1130 >gi|315497132|ref|YP_004085936.1| double-strand break repair helicase adda [Asticcacaulis excentricus CB 48] gi|315415144|gb|ADU11785.1| double-strand break repair helicase AddA [Asticcacaulis excentricus CB 48] Length = 1168 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 260/975 (26%), Positives = 443/975 (45%), Gaps = 47/975 (4%) Query: 1 LKNRFGLSLNESYELIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59 L R L + E + L + + ++ + ++ GN + + L +A + Sbjct: 210 LFKRLDLDPPMTPEQVVDAFAEQLNWDMMPELARSLATVNTKGNQGLSETLLRLSEAHKG 269 Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 + F L + F T K P+K + + + + ++ L++ ++ + ++ + Sbjct: 270 GEPFD-FEALYAVFYTAKGEPRKELCSTKSTQAD---RDTLERWREPLAEAIEKRKAAET 325 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 +TL +L L + +A Y++ K++ LDF+DLI LL +S W+ +K+D + H Sbjct: 326 ALNTLYTLQLFEDFSAIYQDLKRRTGALDFQDLISRAKRLLSGASMSQWVLFKMDGGLEH 385 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH----SSPRTLFAVGDEKQSIYSFHGAEPK 235 +L+DE QDTS QW+++++LT DFF G + RT+FAVGDEKQSIY F GA+P Sbjct: 386 VLVDEGQDTSGDQWDIVKALTGDFFAGASAPVFQARIERTVFAVGDEKQSIYGFQGAKPD 445 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 L + Q A A + F + +L S+RS +L VDK F P+ ++ L+ + I Sbjct: 446 LFLGMRTYYQTLAKQAKKPFVVPQLVQSWRSLPQVLGFVDKAFDGPDLSEALN-FTADPI 504 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 H + R + TV+LW + + + + D+ + A LA+++A+ I+ Sbjct: 505 IHDAGRSERSATVELWPPIYPLAVPDLDDSDDENVAPVDA-SGVAPAKRLAQQLAFHIAQ 563 Query: 356 MIGTDTIF---SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I S+ K R + A D+L+LVRKR L + R LK + V G DR L Sbjct: 564 DIRQGRSVICKSSRKARPMHAGDVLILVRKRD--ALFEHIIRELK-QAGVPVSGADRLKL 620 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 +DH+A +DL AL R L D LS +L+SPL + SEDD+F + R E ++++ + + Sbjct: 621 SDHIAFQDLRALMRVCLQAGDSLSLAAVLRSPLCDLSEDDLFTLT--RVEKASLWQALNR 678 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVID 527 A +F +I + A + DF L+L + G RQ+F++R G E D Sbjct: 679 LA-EDNPRFSEAQNFIGWALSEAPQRTAFDFLGLVLNRRDGAGRTQRQRFVTRLGVECED 737 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 VLDE LN L+ E L + ++ E IKR + VR+MTVH +KGLE+P Sbjct: 738 VLDETLNLALKGEGVGAIGLIDFLNLCEFNASEIKREQEEGGDRVRVMTVHGSKGLEAPW 797 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V L + + DD + + VS L +E Sbjct: 798 VVLPMAPGFKSTRNDDLLLTS-----DDGDLLLSARGRDGDPQAVSALKAVRSLREAKEG 852 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND--ERVKKIKLTNSIN 705 RL YV +TRA D+L +C + + WYD+ D F E V ++L + Sbjct: 853 LRLFYVALTRARDRLTLCGYRGSRAANG-PFPDWYDLAQDGFDRLPREAVTAVELDTVVE 911 Query: 706 KDEWIAYEWSTHHPENTPLERE----ETIKQLMDEQKIPKKLFSPIKNDINEPYILNP-- 759 E S ER + + +P + + D + Sbjct: 912 FGAPKDQESSEKAELLLFGERAPLMSAEAQAAQTQTGLPAFVTAAPTPDPEADVVWRAVS 971 Query: 760 --STIDTKGKTNLESLLSDNQT---FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814 S D + S L++ + F RGL IHKL +++ LP R N + + Sbjct: 972 QLSDEDRADEDRAPSPLAEQRGQGRFGRGLKIHKLFEILPALPVADRDNVAARWLKRQ-P 1030 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI--NCPKKDIIISGRIDQIS 872 + + + ++ +L + A +S EV+++G++ N + + +SGRID++ Sbjct: 1031 DLDDAQREEIRQAVMGVLTDARFADAFGPNSRPEVALAGQVGVNARGEAVFMSGRIDRLV 1090 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 I + + + +YK++ P E + Q++ Y +L+ YP+KS+ L++ PK+ Sbjct: 1091 IGPERVLVIDYKSNRPAPDTAEEAAADYQRQMAGYVALLRQIYPDKSVEAALLWTDGPKL 1150 Query: 933 FIIPQNKLNKAFAEI 947 + + +N +EI Sbjct: 1151 TPLSEALVNLRLSEI 1165 >gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter autotrophicus Py2] gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter autotrophicus Py2] Length = 1167 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 253/955 (26%), Positives = 419/955 (43%), Gaps = 31/955 (3%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 L + S + + P+ S+ + + T + L A++ Sbjct: 237 LDLPADASVADLEVQMLASPHLPHSEWASAAAELAASDKATDRTRGDDLLAAAEAGDTAS 296 Query: 65 RFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 + F + +N+ T+ ++P L +L+ +D + D+ + + T Sbjct: 297 GLAAWRRVFFGSEGPRSDRNLFTKGFADRAPGLAARLRDERDRLAVLADQLLGARTLERT 356 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A+LTLA YE K +LDF+DLI+ LL + +++YK+DQ I+HIL+D Sbjct: 357 EAALTLAAEAVRRYEAEKAARGLLDFDDLIVKAAQLLSDQP--TFVQYKLDQGIDHILVD 414 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 E QDTS QW V++ L +DFF G RTLF VGDEKQSI+SF GA+P+ + Sbjct: 415 EAQDTSPQQWRVVQGLADDFFSGAGAREDVTRTLFVVGDEKQSIFSFQGADPRAFGEMRS 474 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 ++ Q +ELP SFRS +L VD++FS PE GL+ D+ + H + R Sbjct: 475 TFARK--AGPQALRRVELPHSFRSAPGVLEAVDQIFSRPEAHDGLTLDAVAPV-HAAIRA 531 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V++W + Q ++W D P + S LA+RIA I I Sbjct: 532 DAPALVEIWPTTTP----EPATQPDNWRRPLDEAPVDDPVSRLAQRIAGFIQAGIAKGLA 587 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN--DYKISVVGNDRFILTDHLAIKD 420 + + R ++A D+LVLVR+R + + R LK D ++ V G DR ++ +H+A D Sbjct: 588 IPSRQGRPMRAGDVLVLVRRR--GRVFEAVIRALKELKDAQVEVAGADRLVVAEHIAALD 645 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 LMALG ++S +DDL+ +LKSPLF ++DD+ +CT R + + Sbjct: 646 LMALGDTLVSPDDDLALAALLKSPLFGLTDDDLLALCTGRSGRL-----VDALKAAPDPR 700 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540 + A P DF+ +LG GR+ ++R G E DVLDEF+ E Sbjct: 701 HAAAWARLAAWRGEAALLRPFDFYARVLGRDGGRRAMLARLGPEAADVLDEFMVLARAYE 760 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 +SL ++ L + KR + NEVR+MTVH AKGLE+P+V L DT + Sbjct: 761 STEPASLAGFLAYLRRGGAETKRDMESGRNEVRVMTVHGAKGLEAPIVILADTVDMPKAR 820 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + + +P+ P+ ++ EE+ RLLYV +TRA D Sbjct: 821 TAGGLVSV---AGPEGEVPVLAPRKAEDPERLAAARATAAARELEEHRRLLYVALTRAED 877 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +I+C S K Y+ + + + + + + Sbjct: 878 AVIVCGAETRSPAKDKAHARPEGCWYELVRAALAPEADEQNALGFEGQVLRWNKGPGLAV 937 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--ESLLSDNQ 778 P +F+ P +L PS + G + L + Sbjct: 938 AGPAAAPSAAGAEPALP-----IFANPPPPEAAPRLLRPSKTEAAGPSPLRTPGPETALS 992 Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 RG ++H+LL + LP +R A + ++ +L +L + + Sbjct: 993 PLVRGDLVHRLLAGLPDLPAQERAAAGLRLLRHAADKVADEIHQEVLEEALGVLGHAPLA 1052 Query: 839 TAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897 S +EV V G++ + D +SGRID+++++ + + ++KT PQ E + Sbjct: 1053 DLFGAGSRAEVPVIGRLKAQEGADFHVSGRIDRLAVTPDLLIVADFKTDRIPPQRPEDVA 1112 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 ++AQL++Y +L + ++ L+Y + P+VF + +L A A + P Sbjct: 1113 EAYVAQLAVYGALLSQVFAGRAFEARLVYTTGPRVFRLESARLQAALARLGLTSP 1167 >gi|126460955|ref|YP_001042069.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17029] gi|126102619|gb|ABN75297.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17029] Length = 1106 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 221/956 (23%), Positives = 383/956 (40%), Gaps = 65/956 (6%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + +G+ +E + ++ ++ + ++E G+ K A L+ S Sbjct: 209 RALYGVEGDE--AALLAQVFLGGE---AEWMPALIAALEAGSANDQKAAAKLRLLSFASP 263 Query: 62 IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115 + L LT + + T+ L ++L R Sbjct: 264 TTATLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRC 323 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + A Y+ K LDF+DLI LL V+ W+ +++D Sbjct: 324 CLLAAERARLIHAFAGVFLPLYQARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDG 383 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+HIL+DE QDTS QW+VI L ++F G+ RT+F VGD+KQSIYSF GA+ Sbjct: 384 GIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVA 443 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 R + +R A ++ ++L SFRS+ IL +VD F P + + Sbjct: 444 AFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRR-----QALGGEV 498 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 RH + R G +LW V + P+ E+W D + E A+ LAR++A I Sbjct: 499 RHIAFRGDMPGRAELWPLVEAA----EEPEPENWFDPVDLVSDEHHAARLARQVATRIRA 554 Query: 356 MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 MI I G R + A D L+LV++R D + + R K + ++ + G DR L Sbjct: 555 MIEAGVQIPQPGGFRPVAAGDFLILVQRRSD--IFGEIIRACK-EARLPIAGADRLKLGA 611 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA++DL AL F+ + EDDLS +L+SPLF +SE ++F + R Y+ + Sbjct: 612 ELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGRE------GYLWRRL 665 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + + + +L A F P D L R++ ++R G E D +DE L+ Sbjct: 666 YDREAAHPATVAILRDLRDQADFLRPFDLIERALTRHDRRRRLLARLGEEAEDGIDELLS 725 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L E+ SL ++ L+ +KR A +R+MTVH +KGLE+P+V L DT Sbjct: 726 QALAYERTDVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTA 785 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + + + G +W + ++ + + E RLLYV Sbjct: 786 DRKPRERDEL-------FTLEGGARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVA 838 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA LI K W+D++ ++ +++ W Sbjct: 839 MTRAQCWLIAAAAG-----KLETGGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAP 893 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 + +L+PS + +++ Sbjct: 894 QASAAAAAARPVLPAWALAPAAEPPAAP------------EVLSPSALGGAKALPGDAMP 941 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 ++ G +H+LL+ + P + + +L +L Sbjct: 942 TEE-ALAHGSAVHRLLEHLPLHPPEGWEAAARGLL------PDLPDVAPVLAEARAVLSA 994 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + A+ + EV+V+ K+ +SG ID++ + + +YKT+ VP E Sbjct: 995 EHLAEALVPHALLEVAVTAKVA----GRRLSGTIDRLVVEPDRVLAVDYKTNRVVPDRPE 1050 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 +P + Q+ Y + L YP +++ +++ ++ +P++ + A +T Sbjct: 1051 EVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARLMRLPRDIVRSAMVRATTT 1106 >gi|329847172|ref|ZP_08262200.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum C19] gi|328842235|gb|EGF91804.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum C19] Length = 1174 Score = 516 bits (1327), Expect = e-143, Method: Composition-based stats. Identities = 247/969 (25%), Positives = 427/969 (44%), Gaps = 38/969 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L + GL + + + + + T K Q +++ Sbjct: 225 LFHSLGLDGVCTSQECLDAY--ANTLEWHLLEDLGQTLLSGTTATNQKAGQAFLDLYESK 282 Query: 61 CIEE--RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 F + FLTQ T +K+I T+ L + +E + + DR + Sbjct: 283 ISGRPFEFEEIRGIFLTQAGTLRKSIYTKGTAPAD---ARYLDRMAEEAVALADRLKAVE 339 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + +TL +L L + + Y K+ LDF DLI T LL + W+ +K+D ++ Sbjct: 340 IASNTLDALRLFEIFSFVYLSEKRGEGALDFTDLITYTKKLLDDPTHALWVLHKLDGGLD 399 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW ++ +L+ DFF G+ + RTLFAVGDEKQSIY F GA+P+ L Sbjct: 400 HILVDEAQDTSEEQWIIVDALSSDFFSGEGVTRTIRTLFAVGDEKQSIYGFQGADPREFL 459 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + + +RA + G +L S+RS +IL VD VF + L+ S+ I+H Sbjct: 460 KARGQISQRAHDGGANLVEPQLIDSWRSLPEILGFVDAVFKADDVQHALN-FSSDPIQHI 518 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R G V+LW V + + + D + + LA++IA TI + I Sbjct: 519 ARRSDASGVVELWPVVRPMAAVETTADDDDEQAALDDPGRNPPSKRLAKQIAATIRSEIT 578 Query: 359 TDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + ++R + A D+L+LVRKR L + R LK ++V G DR L DH Sbjct: 579 AGRTIYDKALKRRRTVHAGDVLILVRKRDH--LFEHIIRELKI-AGVAVSGADRLKLGDH 635 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 +A +DL AL R L D LS C+L+SPL + SE D+F + R Sbjct: 636 IAFQDLRALLRVCLQPMDALSLACVLRSPLCDLSEQDLFDLAHDRQMPLWSALLHHPATE 695 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVIDVLD 530 + + + A + DF +L + RQ+F++R G+E DVLD Sbjct: 696 GPVHDARIF---LLWAQKAAWQLTAFDFLARVLNRRDFAGRSVRQRFLTRLGDECEDVLD 752 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L L+ E + +L + E IKR + VR+MTVH +KGLE+P V + Sbjct: 753 ETLALALKGEGSGAVALSACLDLFEFQASQIKREQEEGGHAVRVMTVHGSKGLEAPWVIV 812 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + +K ++ + D + + K+ + +D+ ++E RL Sbjct: 813 P-----IGPQYGARKEDLILTGEDG-QMYLCAGGKKADTAVTADIRDGRALREEQESLRL 866 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-KLTNSINKDEW 709 YV +TR+ D+L +C ++ T N +WYD+ D+F E ++ L N + E+ Sbjct: 867 FYVALTRSRDRLTVCAYTGTKPATTGNFPSWYDLASDAFDRLETTSEVMPLVNPFDDGEY 926 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------D 763 H +++ + + + L +DI S + + Sbjct: 927 YNEALVRVHGQHSEALTAQARLREPEVPLPDFALAMVTHDDIETERWAAISQMGDEDRTE 986 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 T+ + L + RG +IHKL +++ + R Y T+ A + + Sbjct: 987 TEIAPSPLQTLGSLGRYRRGNLIHKLFEILPDIAPDNRMAIAQRYLTRQAD-LTDAQREE 1045 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC--PKKDIIISGRIDQISISQQNIFIF 881 + ++ +L + A S EV+++G++ + I++SGRID++ ++ + I Sbjct: 1046 MTDAVMTVLTDARFAEAFGPQSRPEVALAGQVGVNPRGEAIMLSGRIDRLVVTDDRVVII 1105 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 +YK++ P E + Q++ Y +L+ YP++++ L++ P++ +P+ + Sbjct: 1106 DYKSNRPAPDRAEDAAVAYQRQMAGYVALLRQVYPDRAVEAALLWTDGPRLTPMPETLVQ 1165 Query: 942 KAFAEISTK 950 EI ++ Sbjct: 1166 LRLEEILSR 1174 >gi|16127768|ref|NP_422332.1| UvrD/Rep family helicase [Caulobacter crescentus CB15] gi|13425272|gb|AAK25500.1| helicase, UvrD/Rep family [Caulobacter crescentus CB15] Length = 1203 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 250/965 (25%), Positives = 422/965 (43%), Gaps = 50/965 (5%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 R G S E + + + S+ + G K A+ L ++ Sbjct: 270 RRCGFDGPTSAEDLATRA--MARLDLPAWRAVASVLFDGGGKQDAKSAEALAAVAR--DP 325 Query: 63 EERFSLLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + L T + TP K DL+E L Q + R++ ++ Sbjct: 326 DATLDLALRALFTEGGEGTPATWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVA 385 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T +L LA + K+ LDF DLI T LL ++ +AW+ YK+D I+HI Sbjct: 386 EDTQNALLLAGLYIERHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHI 445 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFF-----VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 L+DE QDT+ QWE++R+LT DFF G + + RTLF VGDEKQSIYSF GA+P Sbjct: 446 LLDEAQDTAPEQWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPT 505 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTT 294 R+L E + R G + L +S+RST ++L+ VD +FS P+ +G+ Sbjct: 506 RLLEETQGYISRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDL 565 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 +RH R G G V LW +E+W D + S+ LA IA Sbjct: 566 VRHELFRHGHPGCVDLWPLTREL----PGEDREAWEKPLDEEGERSANRRLAEAIAAETR 621 Query: 355 NMIGTD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 ++ G+ R A DILVLVR+RK L + R LK + V G DR Sbjct: 622 AILDRGDAVFDKDLGRHRAAHAGDILVLVRRRK--ALFEEIIRALK-RRGVPVAGADRLA 678 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 L+ H+A +DL+ALGRFIL +DDL+ +LK+P +DD++ + + T++ + Sbjct: 679 LSSHIAFEDLVALGRFILFPDDDLTLAALLKTPFCGLGDDDVYAL--AKGRRGTLWVELT 736 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVI 526 + + ++ + + + P +F+ LG R + ++R G E Sbjct: 737 RRSEE-RPEWAAARAVLDWALAEGRRRQPFEFYAGWLGLTDADGRSHRAKVLTRLGAEAE 795 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 + LDEFL + EQ L+ L+++ +KR EVR+MT H +KGLE+P Sbjct: 796 EALDEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAP 855 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +VFL +T + + P L + G +W K+ + + K + +E Sbjct: 856 IVFLPETTVKRGAGGS-------PLLVTEDGALLWCASGKNDCAVSAKARKLREDKESQE 908 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA ++LI+C + + WY +F + + ++ Sbjct: 909 ALRLLYVALTRARERLILCGRIDARTKDDKVGG-WYAAARAAFAHPDIAPGVRTIGDGET 967 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + PL P + + + PS ++ Sbjct: 968 --------AFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSRLEDTA 1019 Query: 767 KTNLESLLSDNQTF---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + S L+ RG +IHKLLQ++ LP +R + + + Sbjct: 1020 RVPAPSPLARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAE-RDLTDTQRTE 1078 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 + + +LE+ +S +EV+++G + + +SGR+D++ + + + +Y Sbjct: 1079 MASAAFEVLEDARFAAVFGPNSRAEVALAGTSAHLPQGLAVSGRVDRLVVDDARVLVVDY 1138 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT+ P IE ++AQ+++Y +L++ +P +++ L++ PK+ +P+ + A Sbjct: 1139 KTNRPSPDRIEDADTAYLAQMAVYVAVLREVFPGRTVEAALVWTDGPKLMPVPEKVMALA 1198 Query: 944 FAEIS 948 A ++ Sbjct: 1199 LARLA 1203 >gi|254563798|ref|YP_003070893.1| helicase-exonuclease type V protein family [Methylobacterium extorquens DM4] gi|254271076|emb|CAX27083.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens DM4] Length = 1147 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 265/952 (27%), Positives = 439/952 (46%), Gaps = 43/952 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L L S E I ++ D + + TG T K A L +A Sbjct: 225 LPRALALPDGASVETIEAEILEGSSL--GDWREIAG-RLRTGKATDEKLADGLVEAHAAL 281 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + + S F T K P+ K+ T+ + + D+K+ L Q I + D + Sbjct: 282 GAGKALAPYRSVFFTDKDEPRAAKSFGTKAVPE---DIKQALLDEQARLIPLFDALRAAR 338 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 TL LA ++ E K + LDF+DLI T DLL + ++W+ YK+D+ ++ Sbjct: 339 ALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 H+L+DE QDT+ QWE++R+LT +F G+ RT FAVGD KQSIYSF GA+P+ Sbjct: 398 HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297 +R + A AG F+ + L LSFR+ + +L VD VF +P++ GLS D+ H Sbjct: 458 LTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVDAVFGVPDHFAGLSFDAGAPGTVH 517 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S+R G G V+LW + + +W + D+ + A ++ARRIA + Sbjct: 518 ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVVARRIARAVKTWT 573 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + R+ + D+L+LVRKR + + R +K + V G DR + H+A Sbjct: 574 TKG----DACGRIWRPGDVLILVRKR--SAAFEEVIRAMK-GLGVPVAGQDRLEVAGHIA 626 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 + DL+A+GR L DDL+ LK+PL ++DD+ +IC +R ET+ + + + A G Sbjct: 627 VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFAETLEDALTRHAQAG 686 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 + + I +A P F+ +LG GR + ++R G E D +D FL Sbjct: 687 DGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAS 746 Query: 538 RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L +++ + ++KR + NEVR+MTVH AKGLE+PVV + Sbjct: 747 DAENGGDAPCLDAFLADYIVRPGRGRSGLSVKRDLESGRNEVRVMTVHGAKGLEAPVVVV 806 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +D + ++ + + S D P P+W L+ +EE+NRL Sbjct: 807 IDGCEPL--GRNDPPLLGLDSTADGPLPPVWTGGRTQDCAATLAARSALQARAREEHNRL 864 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV MTRA+D L+I + + E + +W +MV + T+ W Sbjct: 865 LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGDGEAVETDHGPITIWR 921 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768 ++ E + +P LFS + L+PS G+ Sbjct: 922 DGSAASLAAAAADTAPPE-------PETVPDWLFSAAAPEAEAAPPLSPSGALGAADGQR 974 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 L D + RG ++H LL+ + + +R + A + K+L+ ++ Sbjct: 975 QPRRRLGDAEARRRGALVHSLLEHLPRIEPARRAEAADRFARARAPTLEEAKRKDLVRAV 1034 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 RL+E P + + S + +EV++SG+I + ++GRID++ + + + ++KT Sbjct: 1035 LRLIEAPDLASLFSDQARAEVALSGRIVVEGIERDVTGRIDRLVVEDGRVILCDFKTGR- 1093 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 P + +P AQ+S+Y ++ +P+ ++V LL++ S P V + L Sbjct: 1094 PPADDAPLPEREAAQVSLYARLAAAIWPDHAIVALLVWTSGPVVRRVEGALL 1145 >gi|114328674|ref|YP_745831.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1] gi|114316848|gb|ABI62908.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1] Length = 1159 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 255/955 (26%), Positives = 431/955 (45%), Gaps = 42/955 (4%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + G+ ++ E + + + + + + + E G+ T+ ++A + Sbjct: 217 RRALGVPGSQGEEALLATA--VEWTAIGKVREAARDAFENGSNTVRERAGQMLAWLSLSP 274 Query: 62 IEE--RFSLLSSFFLTQKFTP--QKNIIT---QEINKKSPDLKEKLKKSQDEFIKIRDRF 114 E R+ +S FLT K P K + + +E L + IR Sbjct: 275 AERQTRWEEWASLFLTAKGEPCSPKTLFNENKANRGTSADTSRETLVDESHRIVSIRQTL 334 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + ++ + A LA + Y + K + ++DF DLI T+ LL++ + W+ YK+D Sbjct: 335 HAIRLASLSAALTRLAIPVAEAYAKDKARRGLVDFSDLIGRTSALLREPGAA-WVLYKLD 393 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH---SSPRTLFAVGDEKQSIYSFHG 231 I+H+L+DEVQDT+ QWE+ +LT +FF G + PRT+FAVGD KQSIYSF G Sbjct: 394 GGIDHLLLDEVQDTAPEQWEIAGTLTAEFFAGLDDRAEQGKPRTVFAVGDPKQSIYSFQG 453 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+P+ + I R G ++ L +SFRSTA +L + D VF+ P QG+ + Sbjct: 454 ADPQAFRHWRGIMAHRVQQIGYEWRDRPLTVSFRSTAPVLALTDAVFADPLARQGVI-EP 512 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 T+RH R GTV++WE V + P + +W + ++AS+LA R+A Sbjct: 513 EETLRHLPDRAEDAGTVEIWEPVQTPET----PTRPAWQPAEEYGTHTTAASLLAGRLAD 568 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 I++ IG + R I A D L+L+R+RK L + V G DR Sbjct: 569 WIASRIGQ---TLPSENRPIHAGDYLILLRRRK---PFAPLLERALKLRGVPVAGLDRLP 622 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 LT A+ DL+AL +L +DD++ C+L SPL S+D + ++ R +T Sbjct: 623 LTSQPAVADLLALCDTLLLPDDDMALACLLTSPLGGLSDDSLMELALGRRDTLW---GTL 679 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531 + + + ++ +++ + +PH + L +GR + +R G E + +DE Sbjct: 680 RKRRKERTAWDQAASFLEDMLGQVDYTTPHALLSAALVRHRGRARLFARLGAEASEPIDE 739 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 LN +R Q SLQ + L + P +KR S+ VRIMTVH +KGLE+P+V L Sbjct: 740 LLNAAMRYAQLHPPSLQGFVHWLRRSAPEVKREMSSGGQAVRIMTVHGSKGLEAPIVILP 799 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 DT S + + +P+W P + + + L + + QEEYNRLL Sbjct: 800 DTVSTPRTENS---ILWTEDPETGLSVPLWKPNQDFQCDSFAVLEAKEQAARQEEYNRLL 856 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV +TRA D+L++C N K +WY + + + + Sbjct: 857 YVALTRARDRLLVCGWLGKEN-KPPPDESWYAAIRRGMERLPNAETVGTDHGEVIRLTSP 915 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 + + + P +P + P L PS D + Sbjct: 916 QQRAAQQARTDISTP--VQAPPAWMGQAPDWQPAPRPAEPVRPEPLAPSRPDNADLGPVP 973 Query: 772 SL-----LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + F RG +IH+LLQ + LP +R+ + + + E ++ Sbjct: 974 AADSPLIADRRARFRRGQVIHQLLQHLPLLPAKEREAAMKRFLLQTL----PSEADHVAK 1029 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 I+ +L++P + D EV ++G I K +I G +D++++ + I I +YKT+ Sbjct: 1030 QISAILDHPRLAALFGADGRGEVPLTGVIGPDDKPQVIGGIVDRLAVLPERILIADYKTN 1089 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 H P I P ++ Q++ Y +L YP++ ++C LI+ ++ +P L+ Sbjct: 1090 RHPPASISETPVLYLRQMAAYRAVLSSIYPDRDVLCALIWTETGRIDTLPSELLD 1144 >gi|83859061|ref|ZP_00952582.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633] gi|83852508|gb|EAP90361.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633] Length = 1219 Score = 512 bits (1319), Expect = e-142, Method: Composition-based stats. Identities = 252/1002 (25%), Positives = 420/1002 (41%), Gaps = 85/1002 (8%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCI 62 G+ + + + + W V + +S G T A+ L + + Sbjct: 232 LGVDPDLDVDQVLAEAWGDT--DVGALEAALSALQTGGTKTDQASAEALLEILDVAEEDS 289 Query: 63 EERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEF----IKIRDRFNT 116 E F F T+ +K +I +++ L E ++ + Sbjct: 290 AEAFDYYIDFLTTKTGALKKPKSIYSKKTGDSYRILVTLFGDEGAEIHRVGDEVLPKLAA 349 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + T A+L +A L Y+ + +DF DL+ LL + W YK+DQ Sbjct: 350 ATANRMTRAALRIADALLNDYQARLNRLRRVDFSDLVERARALLTDSEARGWALYKLDQG 409 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS------PRTLFAVGDEKQSIYSFH 230 ++H+L+DE QDT+ QW VI +LTE+FF G + + RT+F VGDEKQSIYSF Sbjct: 410 LDHVLVDEAQDTAPEQWAVINALTEEFFAGDGAYETSHPDALRRTVFCVGDEKQSIYSFQ 469 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI-----PENAQ 285 A+P+ L +++ Q A A +F L +SFRS+ ++L VD F+ + Sbjct: 470 NADPREFLAQRQRLQTEAKLARLRFESPPLNVSFRSSPEVLAAVDACFAAEAAVLNTERK 529 Query: 286 GLSEDSTTTI--------------------RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 L E T + H ++R+ G V++W V Q + Sbjct: 530 DLVEGLETKLLMSDPETQQTRDPLAFHRYDGHVAARVNAPGCVEIWPAVPKPEGGQEDEL 589 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK----RVIQAKDILVLVR 381 D+ ++S+ + LA +A I+++I K R A DILVLVR Sbjct: 590 D---LRPVDAERKDSARNQLAEAVASEIADIITRGDGVWEEGKPWRLRPAHAGDILVLVR 646 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 +R L + R LK + V G DR L D L ++DL++L RF L EDDLS +L Sbjct: 647 RRGG--LFEEIIRRLKLK-NVPVAGADRMTLPDQLVVEDLLSLARFALLPEDDLSLAEVL 703 Query: 442 KSPLFN--------FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 KSP F+ +D +F + R +++ K +F+ + Sbjct: 704 KSPFFHPVRAVTPPIDDDALFDL--SRQPGARLWD---KLRRSDDPRFRDARAALETARA 758 Query: 494 IAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 + +P+ FF L + +R G E D +EFLN L +E SL Sbjct: 759 RVETDAPYAFFARFLTETSPTGESRLARLYARLGEEARDPAEEFLNRALAHEVEGAPSLS 818 Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 ++ ++ IKR A EVR+MTVH AKGLE+P+VFL DT + Sbjct: 819 RFVAAMQADAVQIKREMEAGRGEVRVMTVHGAKGLEAPIVFLPDTT--QLPRDRSGGLFA 876 Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 +W P K +++ + + + EY RLLYV MTRA D+LI+C H+ Sbjct: 877 HEEAG-----LLWSPDMKMPPPLLASIAERKELDADGEYQRLLYVAMTRARDRLIVCGHT 931 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + K + D R K L ++ W A + + PL + Sbjct: 932 HGVAGKVDAGSWHDRCQHSWTGADWRPVKTALEGVAAENGWEAAPGLRYGADPKPL--KA 989 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT------FNR 782 + +P P D + PS + + ++ E F R Sbjct: 990 SAAPEAAPVTLPGWAIQPPPADPAPVRSVAPSKLLGEEESGFEPASLSPLAKGGQSRFRR 1049 Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842 G +IHKLLQ + + E +R+ Y + + + R++ +P Sbjct: 1050 GELIHKLLQTLPDIEESRREASALRYLENQTD-LDDAQRREIASETLRVISDPTFAALFQ 1108 Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902 S +E +V+G+ ++I+G+ID++ ++ + I +YKT+ PQ++E +P ++A Sbjct: 1109 PGSRAEAAVAGQAAGLPGGMVINGQIDRLVVTDHEVLIVDYKTNRPPPQKVEDVPRAYLA 1168 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 Q++ Y +L+ +P K + C L++ P++ +P +++ Sbjct: 1169 QMAAYRALLQGLHPEKPVRCALLWTVAPRLMELPPERMDAVL 1210 >gi|170749778|ref|YP_001756038.1| double-strand break repair helicase AddA [Methylobacterium radiotolerans JCM 2831] gi|170656300|gb|ACB25355.1| double-strand break repair helicase AddA [Methylobacterium radiotolerans JCM 2831] Length = 1165 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 256/962 (26%), Positives = 436/962 (45%), Gaps = 44/962 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS--- 57 L GL+ ES E I + + + ++ TG K A L+ A Sbjct: 229 LHGALGLAAEESAERIEAAILEGGPGCRPEERAALVAALRTGKANDEKLADALEAAEAER 288 Query: 58 ----QTQCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIR 111 E +L S F TQK P+ ++ T+ + + L +D + Sbjct: 289 VRAADLPERAEALALYRSVFFTQKDEPKADSSLGTKGVPAGAK---AALLAERDRLEPLF 345 Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 DR + T A +A ++ E K + LDF+DLI DLL + + W+ Y Sbjct: 346 DRLRAARAHARTQALFQIAAEIHRRVEAQKARLGALDFDDLIHKALDLLGR-VGAGWVLY 404 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 K+D+ I+H+L+DE QDT+ QW ++R++T++F G+ RT FAVGD KQSIY F G Sbjct: 405 KLDRGIDHVLVDEAQDTNPEQWAILRAITQEFAAGEGARIGSRTRFAVGDPKQSIYGFQG 464 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS-ED 290 AEP+ + + +AG F + L LSFRST +L VD VF++ + +GLS ED Sbjct: 465 AEPREFALTRASWIAESRSAGLTFEDVPLTLSFRSTGLVLRAVDAVFALDAHNEGLSFED 524 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + T H S+R G G V+LW + + + ++WT+ D+ + A + ARR+A Sbjct: 525 TVRTTVHASARPGAPGAVELWPI----AEPEPAAEPDAWTAPVDAPETSAPAIVTARRVA 580 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 + T + R+ + D+L+LVRKR P + R LK + V G DR Sbjct: 581 QAVRAWTTTG----DATGRIWRPGDVLILVRKR--GPAFEEVIRALK-GIGVPVAGQDRL 633 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 ++ H+A+ DL+A GR L DDL+ LK+PL ++DD+ +I +R ET+ + + Sbjct: 634 EVSAHIAVADLVAAGRAGLLPADDLTLATALKTPLVGLTDDDLVRIAARRDLAETLEDAL 693 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 + A G + + ++ + I +A P F+ +LG + GR + ++R G E D +D Sbjct: 694 HRHAEAGDAAARRGLEALSGWIALAGLHGPFGFYARLLGPQGGRAKLVARLGGEAGDAID 753 Query: 531 EFLNFTLRNEQNSY-SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 FL + E SL ++ + T+KR + +EVR+MTVH AKGLE+PV Sbjct: 754 VFLAAAAQAETGEDAPSLGGFLARYVGAEAGHTVKRDLESGRDEVRVMTVHGAKGLEAPV 813 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V ++D + + P+W L ++E+ Sbjct: 814 VVILDGCE---PLGRNDPPLLPLPATEIALPPVWSGGRTQDCAATDAARAALLAKARQEH 870 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 NRLLYV MTRA+D+LI+ ++ + W M++ + Sbjct: 871 NRLLYVAMTRAADRLIVAPFR---GHERETEAAWCRMIHAGLEAALGAGRSLELPYGPAT 927 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTK 765 W + + + P L P+ + LNPS Sbjct: 928 LWQDGAPAGPA------PAAAAPASGPEAELEPDWLRGPVPPEPAFEA-LNPSGALQAAD 980 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 G L+D Q RG++ H LLQ + + +R+ ++ A P ++ Sbjct: 981 GARVPPPRLADAQARRRGILTHALLQHLPRVEPARRETAGRAFVRARAPGLPRAAAPAIV 1040 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 S+ R+++ P + + D+ +EV++SG++ D ++ GR+D+++++ + + ++KT Sbjct: 1041 RSVLRIVDAPELAPLFAPDARAEVALSGRVRAGGTDRVVQGRVDRLAVTADAVHLADFKT 1100 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 P+ +P Q+++Y ++L YP +++ LL++ S P + + + + A Sbjct: 1101 GR-PPEPGAPLPAAEAGQIALYARLLAQIYPGRTIRPLLVWTSGPVIRTLDPDDVAAALD 1159 Query: 946 EI 947 I Sbjct: 1160 RI 1161 >gi|240141289|ref|YP_002965769.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens AM1] gi|240011266|gb|ACS42492.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens AM1] Length = 1147 Score = 512 bits (1318), Expect = e-142, Method: Composition-based stats. Identities = 265/952 (27%), Positives = 437/952 (45%), Gaps = 43/952 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L L S E I ++ D + + TG T K A L +A Sbjct: 225 LPRALALPDGASVETIEAEILEGSSL--GDWREIAG-RLRTGKATDEKLADGLVEAHAAL 281 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + + S F T K P+ K+ T+ + + D+K+ L Q I + D + Sbjct: 282 GAGKALAPYRSVFFTDKDEPRAAKSFGTKAVPE---DIKQALLDEQARLIPLFDALRAAR 338 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 TL LA ++ E K + LDF+DLI T DLL + ++W+ YK+D+ ++ Sbjct: 339 ALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 H+L+DE QDT+ QWE++R+LT +F G+ RT FAVGD KQSIYSF GA+P+ Sbjct: 398 HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297 +R + A AG F+ + L LSFR+ + +L VD VF +P++ GLS D+ H Sbjct: 458 LTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVDAVFGVPDHFAGLSFDAGAPGTVH 517 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S+R G G V+LW + + +W + D+ + A ++ARRIA + Sbjct: 518 ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVVARRIARAVKTWT 573 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + R+ + D+L+LVRKR + + R +K + V G DR + H+A Sbjct: 574 TKG----DACGRIWRPGDVLILVRKR--SAAFEEVIRAMK-GLGVPVAGQDRLEVAGHIA 626 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 + DL+A+GR L DDL+ LK+PL ++DD+ +IC +R ET+ + + + A G Sbjct: 627 VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFAETLEDALTRHAQAG 686 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 + + I +A P F+ +LG GR + ++R G E D +D FL Sbjct: 687 DGAAIRGLTALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAA 746 Query: 538 RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L +++ + ++KR + NEVR+MTVH AKGLE+PVV + Sbjct: 747 DAENGGDAPCLDAFLADYIVRPGRGRSGLSVKRDLESGRNEVRVMTVHGAKGLEAPVVVV 806 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +D + ++ + + S D P P+W L+ +EE+NRL Sbjct: 807 IDGCEPL--GRNDPPLLGLDSTADGPLPPVWTGGRTQDCAATLAARSALQARAREEHNRL 864 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV MTRA+D L+I + + E + +W +MV + T+ W Sbjct: 865 LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGDGEAVETDHGPITIWR 921 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768 ++ E + +P LFS + L+PS G+ Sbjct: 922 DGSAASLAAAAADTAPPE-------PETVPDWLFSAAAPEAEAAPPLSPSGALGAADGQR 974 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 L D + RG ++H LL+ + + +R + A + K+L+ ++ Sbjct: 975 QPRRRLGDAEARRRGALVHSLLEHLPRIEPARRAEAADRFARARAPTLEEAKRKDLVRAV 1034 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 RL+E P + S + +EV++SG+I + ++GRID++ + + + ++KT Sbjct: 1035 LRLIEAPDLAPLFSDQARAEVALSGRIVVEGIERDVTGRIDRLVVEDGRVILCDFKTGR- 1093 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 P + +P AQ+S+Y ++ +P ++V LL++ S P V + L Sbjct: 1094 PPADDAPLPEREAAQVSLYARLAAAIWPEHAIVALLVWTSGPVVRRVEGALL 1145 >gi|220921602|ref|YP_002496903.1| double-strand break repair helicase AddA [Methylobacterium nodulans ORS 2060] gi|219946208|gb|ACL56600.1| double-strand break repair helicase AddA [Methylobacterium nodulans ORS 2060] Length = 1157 Score = 512 bits (1317), Expect = e-142, Method: Composition-based stats. Identities = 260/966 (26%), Positives = 449/966 (46%), Gaps = 49/966 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L++ GL+ E+ I + + + + + TG T K+A+ L A+ + Sbjct: 223 LRDALGLAPGETAAAIEARMLEEGPGDWAGL----AARLRTGKATDEKRAEALALAAVAE 278 Query: 61 CIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 +R L + F + + T+ + + +K+ L Q +R+R Sbjct: 279 GP-QRLPLYLAVFFKDEGEGDPYAAATLGTKAVPEA---VKQALLDEQARLSTLRERLKA 334 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + T A TLA ++ E K + LDF+DLI T DLL + D + W+ YK+D+ Sbjct: 335 ARAHARTCALFTLAAEIHRRVELQKARLGALDFDDLIHKTLDLLTRVDSA-WVLYKLDRG 393 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS--PRTLFAVGDEKQSIYSFHGAEP 234 I+H+LIDE QDT+ QWE++R +TEDF G S PRT FAVGD KQSIYSF GA P Sbjct: 394 IDHVLIDEAQDTNPEQWEILRRITEDFCAGAGARSGEMPRTRFAVGDPKQSIYSFQGAAP 453 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS-EDSTT 293 + ++ +K A AG F + L LSFRS +L VD F++ E+ +GLS D Sbjct: 454 EEFETTRQAWRKAALGAGLTFEDVGLTLSFRSARGVLRGVDATFALAEHFRGLSFGDEAV 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H + RIG G V+LW P+ ++W D++ + A ++ARR+A + Sbjct: 514 GTVHETVRIGAPGQVELWPA----ETPSPEPEPDAWVQPVDAVEAGAPALVVARRVARAV 569 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 T + R+ + +IL+LVRKR + + R LK + + V G DR + Sbjct: 570 RCWTTTG----DEAGRIWRPGEILILVRKR--SAAFEGVIRALKAE-GVPVAGQDRLDIA 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473 H+A+ DL+A GR L EDDL+ LK+PL S+DD+ +I +R +E++ + + Sbjct: 623 AHIAVMDLVAAGRAALLPEDDLTLATALKTPLVGLSDDDLVRIAARREASESLARALARH 682 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533 A G Q + E +A+ P F+ +LG + GR + ++R G E D +D FL Sbjct: 683 AEAGDPAAQRGAAALAEWQALARETGPFGFYAELLGPRGGRTRLVARLGGEAGDAIDVFL 742 Query: 534 NFTLRNEQ-NSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 ++ EQ SL ++ + T+KR + +EVR+MTVH AKGLE+ Sbjct: 743 TAAVQAEQGTDAPSLTGFLARYAPSGGRDAGGHTVKRDLESVRDEVRVMTVHGAKGLEAG 802 Query: 587 VVFLVDTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 +V L+D + + +P+W P ++ L + Sbjct: 803 LVVLIDGCEPLGRNDPPLLPMEIGDGTAVHGGTVPVWSPSKGHDCPAIAAARDALHDRAR 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 +E+NRLLYV MTRA D+L+I + + E ++ R ++ + Sbjct: 863 QEHNRLLYVAMTRAKDRLVIAPYRGSDKETPE-----------AWCEMVRRGLVEAFGGV 911 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + E T + +P LF P+ + L PS + Sbjct: 912 ERTEMPYGPAETWREGAAVPMPPAPPVSAPAAEALPDWLFRPVAPEAEPLPPLRPSGLGA 971 Query: 765 KGKTNL-ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + ++ SD RG++IH LL+ + + +R+ T++ A + Sbjct: 972 ADEPRRSDARSSDPAARRRGVLIHALLEHLPAVAPERRETAATAFVAARAPGLAPPDRAA 1031 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 ++ ++ RLL +P + + +EV+++G+I + + GR+D+++++ + +++ ++ Sbjct: 1032 IVAAVMRLLADPDLAVLFGPAARAEVTLAGRIPLRGAEWPVHGRVDRLAVTDEAVWLCDF 1091 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT P E +P AQ+++Y +L +P+++++ LL++ + P + + + + A Sbjct: 1092 KTGR-PPSEDAPVPAGMAAQVALYAALLARIHPDRAVIPLLVWTAGPIIRRLSEAECAAA 1150 Query: 944 FAEIST 949 I Sbjct: 1151 LDAIVP 1156 >gi|260752463|ref|YP_003225356.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551826|gb|ACV74772.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1162 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 242/956 (25%), Positives = 429/956 (44%), Gaps = 41/956 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 +K L ++ + + + +F + + + + + T K +Q Sbjct: 218 VKRALDLPFSDINQALE-EACDDDHFDFALLRQIAEANEKWDTATAHKNLAIIQDFVAAS 276 Query: 61 CIEERFSL--LSSFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 + SL S LTQK +K IT++I + + L K+ + I ++ R Sbjct: 277 PADRLASLGDFQSLILTQKGELKKAPTGITKKIAPEYEEWMIALSKAIHQIISLKKRHE- 335 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + +A+L + + +++ KK++ ++DF D+I + LL+ + W+RYK+D+ Sbjct: 336 --FSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRT 393 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSFHGAEP 234 +HIL+DE QDT++ QW +I +L EDFF G++ S + R++FAVGD KQ+IY F G +P Sbjct: 394 TDHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVETSRSIFAVGDFKQAIYGFQGTDP 453 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-QGLSEDSTT 293 + + + ++ +G++ + L SFRST IL +VD++ + E++ G+ Sbjct: 454 QAFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H+S+R G+V LW+ + + N +E T D E+ LA R+A I Sbjct: 514 LQPHQSARSDLGGSVVLWQPISDYQEEGENTSEE--TDADDEEQLENGELELAIRLARQI 571 Query: 354 SNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + T R +DIL+LVR R + L + KI V G DR L Sbjct: 572 ETWLNPKTPLYLPALGRNAAPRDILILVRNRG---RLASLIVGCLHAQKIPVAGLDRLTL 628 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 T LA+ DL++ RF+L +DDL+ C+L SPL + ++ ++++ +R + E++++ ++K Sbjct: 629 TAPLAVSDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRK 688 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDE 531 + I + A F +P+ F ++L K GR++ + R G E D ++E Sbjct: 689 -----SEAEKETWDVIRGWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINE 743 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 LN L E + S Q + + IKR S N VRIMTVH AKGL++PVV L Sbjct: 744 LLNAALLLESETTPSFQRFLDWFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQAPVVILA 803 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNR 649 D +K I L++ + D+I K +E+ R Sbjct: 804 DATRDPHQSNGFRKEIITWPLDEANAPIPMPSNDDIAYLPSDFGDIINEKKAKGLQEHWR 863 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DE 708 LLYV TRA + L+I H + + + +WY + + Sbjct: 864 LLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITAMGIAWQEDAMWQQKAVYH 923 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 W + T P+ P ++ +P + + I + Y L PS + + Sbjct: 924 WEGRKKVTDIPKKQPT---------FPKEAMPSWIKNEIPEEPKPAYPLRPSDLVKDNTS 974 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 N RG ++H L + + LP +R+ + +A + A +L+ Sbjct: 975 NPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAALRNSLIKDA 1034 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTH 886 + NP+ S + +E ++ K+ + +ISG +D++ I + + I ++KT Sbjct: 1035 CDAMSNPVYRDIFSEKALAEAPIAAKV----GEHVISGTVDRLWIDRDKKRVHIVDFKTG 1090 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 VP E + + QL+ Y L+ +P+ ++ L+Y + PK+ Q L+ Sbjct: 1091 RRVPATKEQVSEAYQRQLAAYVVALEKIFPDYAIEASLLYTTAPKLVSFEQPFLHD 1146 >gi|218532781|ref|YP_002423597.1| double-strand break repair helicase AddA [Methylobacterium chloromethanicum CM4] gi|218525084|gb|ACK85669.1| double-strand break repair helicase AddA [Methylobacterium chloromethanicum CM4] Length = 1147 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 265/952 (27%), Positives = 436/952 (45%), Gaps = 43/952 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L L S E I ++ D + + TG T K A L +A Sbjct: 225 LPRALALPDGASIETIEAEILKGSSL--GDWREIAG-RLRTGKATDEKLADGLVEAHAAL 281 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + + S F T K P+ K+ T+ + + D+K+ L Q I + D + Sbjct: 282 GAGKALASYRSVFFTDKDEPRAAKSFGTKAVPE---DIKQALLDEQARLIPLFDALRAAR 338 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 TL LA ++ E K + LDF+DLI T DLL + ++W+ YK+D+ ++ Sbjct: 339 ALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 H+L+DE QDT+ QWE++R+LT +F G+ RT FAVGD KQSIYSF GA+P+ Sbjct: 398 HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297 +R + A AG F+ + L LSFR+ + +L VD VF +P++ GLS D+ H Sbjct: 458 LTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVDAVFGVPDHFAGLSFDAGAPGTVH 517 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S+R G G V+LW + + +W + D+ + A ++ARRIA + Sbjct: 518 ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVVARRIARAVKTWT 573 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + R+ + D+L+LVRKR + + R +K + V G DR + H+A Sbjct: 574 TKG----DACGRIWRPGDVLILVRKR--SAAFEEVIRAMK-GLGVPVAGQDRLEVAGHIA 626 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 + DL+A+GR L DDL+ LK+PL ++DD+ +IC +R ET+ + + + A G Sbjct: 627 VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFAETLEDALTRHAQAG 686 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 + + I +A P F+ +LG GR + ++R G E D +D FL Sbjct: 687 DGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAA 746 Query: 538 RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L +++ + ++KR + NEVR+MTVH AKGLE+PVV + Sbjct: 747 DAENGGDAPCLDAFLADYIVRPGRGRSGLSVKRDLESGRNEVRVMTVHGAKGLEAPVVVV 806 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +D + ++ + + S D P P+W L+ +EE+NRL Sbjct: 807 IDGCEPL--GRNDPPLLGLDSTADGPLPPVWTGGRTQDCAATLAARFALQARAREEHNRL 864 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV MTRA+D L+I + + E + +W +MV + T W Sbjct: 865 LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGAGEAVETEHGPITIWR 921 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768 ++ E + +P LFS + L+PS G+ Sbjct: 922 DGSTASLAAAAADTAPPE-------PEVVPDWLFSAAAPEAEAAPPLSPSGALGAADGQR 974 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 L D + RG ++H LL+ + + +R + A + K+L+ ++ Sbjct: 975 QPRRRLGDAEARRRGALVHSLLEHLPRIEPARRAEAADRFARARAPTLEEAKRKDLVRAV 1034 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 RL+E P + S + +EV++SG+I + ++GRID++ + + + ++KT Sbjct: 1035 LRLIEAPDLAPLFSDQARAEVALSGRIVVEGIERDVTGRIDRLVVEDGRVILCDFKTGR- 1093 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 P + +P AQ+S+Y ++ +P ++V LL++ S P V + L Sbjct: 1094 PPADDAPLPEREAAQVSLYARLAAAIWPEHAIVALLVWTSGPVVRRVEGALL 1145 >gi|332185666|ref|ZP_08387413.1| double-strand break repair helicase AddA [Sphingomonas sp. S17] gi|332014024|gb|EGI56082.1| double-strand break repair helicase AddA [Sphingomonas sp. S17] Length = 1148 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 223/957 (23%), Positives = 403/957 (42%), Gaps = 55/957 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT- 59 L+ L + E I + + + V+ + + G T K A +++ + Sbjct: 216 LRRALDLPSGDIDEAIAEGVEDIDEDAVARL---AGANRAWGTATGEKAAAAMERWLGSD 272 Query: 60 -QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 L T K P+K ++++ PD ++ + + + + Sbjct: 273 RAGRVALLEALMGTVFTAKGEPRK--ASKKLVDADPDYEDMASEVGEACRYLLSLAARAR 330 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 L++ + Y +AK+ +DF+DLI T DLL++ + W+RYK+DQ Sbjct: 331 HADLLADGLSVGRDYARAYGQAKRAIGAVDFDDLIRMTVDLLQRPGIGEWVRYKLDQVTE 390 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 H+LIDE QDT+L QW ++R+L ++FFVG+ S RTLF VGD KQ+I+ F G +P Sbjct: 391 HVLIDEAQDTNLNQWLIVRALADEFFVGRGLYAPSTRTLFTVGDYKQAIFGFQGTDPINF 450 Query: 238 LREKRINQKRA-----------TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 ++ +RA G F+ + L SFRST IL VD E Sbjct: 451 QAAEQHFHRRALQVAGEEDWPTEERGLPFNRLSLTHSFRSTRPILEFVDA---AVEALAE 507 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + +S + G V LW VV+ + +E W + + +A Sbjct: 508 PGMGLAGEVERHASEVKGPGRVTLWPPVVA---GGSDEDEEGWI--------DDAVRKVA 556 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 IA + + + + R ++ +DI++LV++R D + L + V G Sbjct: 557 TDIARAVRRWLDDGLMLESKG-RRLEPQDIMILVKRRGD---LASLIVARLYAEGVPVAG 612 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 DR L LA++DL+A RF+L EDDLS +L SPL +S++ + + E ++ Sbjct: 613 VDRLRLNAPLAVQDLLAAVRFVLQPEDDLSLAALLVSPLIGWSQERL--MEAGYRERGSL 670 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEV 525 + ++ + + + +++ A +P+ F +L G GR++ I R G E Sbjct: 671 WAHLTRTLPADD------LAPLRQMLGRADVFTPYQFLEELLSGPLDGRRKLIRRLGTEA 724 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 D ++E LN L E + SLQ + ++ I R SA + VR+MT H +KGL++ Sbjct: 725 RDPIEELLNAALTFESTTTPSLQRFLDWFDRGDVEIVRDPSAPLDAVRVMTAHGSKGLQA 784 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P+V L D + + + IP++ P+++ R + + + Sbjct: 785 PLVILADATAD--PTASPRSILRWTPEPGALPIPVFPPRAEERGGPLDAVAAEIAARELA 842 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E+ RL YV TRA +QL++ +WY + + T + Sbjct: 843 EHWRLFYVAATRAEEQLVVAGALGKRAAGVPPMHSWYATCARAMTALG----VAETEPGD 898 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 Y + P L E +P + P + P L PS++ Sbjct: 899 GQSRTFYGMTPQAPFAPHSGASTPSPVLRAEAPLPDWVHRPAPQESRPPRPLAPSSLGED 958 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + + RG +IH LL+ + + R+ + + A + A ++ Sbjct: 959 LVADPPPTPAMRAAAERGRLIHCLLERLPPVAPEARRGAAERWLVQAAGVENADLRADVS 1018 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 ++ +L++P S +E ++ + +++SGR+D++ I I + +YKT Sbjct: 1019 QAVFGILDDPAYAALFGPGSLAEAPIAATLAS---GLVVSGRVDRLLIEADEIRLIDYKT 1075 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 P ++ +P H+AQ++ Y L+ +P + + L+Y + P++ +P L Sbjct: 1076 GRRAPGGLDDVPVFHLAQMAGYAAALEVIFPGRRVSVALLYTAGPRLIPVPDRVLAA 1132 >gi|163853836|ref|YP_001641879.1| double-strand break repair helicase AddA [Methylobacterium extorquens PA1] gi|163665441|gb|ABY32808.1| double-strand break repair helicase AddA [Methylobacterium extorquens PA1] Length = 1147 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 263/952 (27%), Positives = 437/952 (45%), Gaps = 43/952 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L L S E I ++ D + + TG T K A L +A Sbjct: 225 LPRALALPDGASIETIEAEILKGSSL--GDWREIAG-RLRTGKATDEKLADGLVEAHAAL 281 Query: 61 CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + + S F T K P+ K+ T+ + + D+K+ L Q I + D + Sbjct: 282 GAGKALAPYRSVFFTDKDEPRAAKSFGTKAVPE---DVKQALLDEQARLIPLFDALRAAR 338 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 TL LA ++ E K + LDF+DLI T DLL + ++W+ YK+D+ ++ Sbjct: 339 ALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 H+L+DE QDT+ QWE++R+LT +F G+ RT FAVGD KQSIYSF GA+P+ Sbjct: 398 HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297 +R + A AG F+ + L LSFR+ + +L VD VF +P++ GLS D+ H Sbjct: 458 LTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVDAVFGVPDHFAGLSFDAGAPGTVH 517 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S+R G G V+LW + + +W + D+ + A ++ARRIA + Sbjct: 518 ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVVARRIARAVKTWT 573 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + R+ + D+L+LVRKR + + R +K + V G DR + H+A Sbjct: 574 TKG----DACGRIWRPGDVLILVRKR--SAAFEEVIRAMK-GLGVPVAGQDRLEVAGHIA 626 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 + DL+A+GR L DDL+ LK+PL ++DD+ +IC +R ET+ + + + A G Sbjct: 627 VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFAETLEDALTRHAQAG 686 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 + + I +A P F+ +LG GR + ++R G E D +D FL Sbjct: 687 DGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAA 746 Query: 538 RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L +++ + ++KR + NEVR+MTVH AKGLE+PVV + Sbjct: 747 DAENGGDAPCLDAFLADYIVRPGRGRSGLSVKRDLESGRNEVRVMTVHGAKGLEAPVVVV 806 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +D + ++ + + S + P P+W L+ +EE+NRL Sbjct: 807 IDGCEPL--GRNDPPLLGLDSTAEGPLPPVWTGGRTQDCAATLAARSALQARAREEHNRL 864 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV MTRA+D L+I + + E + +W +MV + T W Sbjct: 865 LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGDGEAVETEHGPITIWR 921 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768 ++ E + +P LFS + L+PS G+ Sbjct: 922 DGSAASLAAAAADTAPPE-------PETVPDWLFSAAAPEAEAAPPLSPSGALGAADGQR 974 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 L D + RG ++H LL+ + + +R + A + K+L+ ++ Sbjct: 975 QPRRRLGDAEARRRGALVHSLLEHLPRIEPARRAEAAERFARARAPTLEEAKRKDLVRAV 1034 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 RL+E P + S + +EV++SG+I + ++GRID++ + + + ++KT Sbjct: 1035 LRLIEAPDLAPLFSDQARAEVALSGRIVVEGIERDVTGRIDRLVVEDGRVILCDFKTGR- 1093 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 P + +P AQ+++Y ++ +P ++V LL++ S P V + +L Sbjct: 1094 PPADDAPLPEREAAQVNLYARLAAAIWPEHAIVALLVWTSGPVVRRVEGARL 1145 >gi|221236588|ref|YP_002519025.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000] gi|220965761|gb|ACL97117.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000] Length = 1153 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 250/965 (25%), Positives = 422/965 (43%), Gaps = 50/965 (5%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 R G S E + + + S+ + G K A+ L ++ Sbjct: 220 RRCGFDGPTSAEDLATRA--MARLDLPAWRAVASVLFDGGGKQDAKSAEALAAVAR--DP 275 Query: 63 EERFSLLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + L T + TP K DL+E L Q + R++ ++ Sbjct: 276 DATLDLALRALFTEGGEGTPATWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVA 335 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T +L LA + K+ LDF DLI T LL ++ +AW+ YK+D I+HI Sbjct: 336 EDTQNALLLAGLYIERHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHI 395 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFF-----VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 L+DE QDT+ QWE++R+LT DFF G + + RTLF VGDEKQSIYSF GA+P Sbjct: 396 LLDEAQDTAPEQWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPT 455 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTT 294 R+L E + R G + L +S+RST ++L+ VD +FS P+ +G+ Sbjct: 456 RLLEETQGYISRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDL 515 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 +RH R G G V LW +E+W D + S+ LA IA Sbjct: 516 VRHELFRHGHPGCVDLWPLTREL----PGEDREAWEKPLDEEGERSANRRLAEAIAAETR 571 Query: 355 NMIGTD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 ++ G+ R A DILVLVR+RK L + R LK + V G DR Sbjct: 572 AILDRGDAVFDKDLGRHRAAHAGDILVLVRRRK--ALFEEIIRALK-RRGVPVAGADRLA 628 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 L+ H+A +DL+ALGRFIL +DDL+ +LK+P +DD++ + + T++ + Sbjct: 629 LSSHIAFEDLVALGRFILFPDDDLTLAALLKTPFCGLGDDDVYAL--AKGRRGTLWVELT 686 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVI 526 + + ++ + + + P +F+ LG R + ++R G E Sbjct: 687 RRSEE-RPEWAAARAVLDWALAEGRRRQPFEFYAGWLGLTDADGRSHRAKVLTRLGAEAE 745 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 + LDEFL + EQ L+ L+++ +KR EVR+MT H +KGLE+P Sbjct: 746 EALDEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAP 805 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +VFL +T + + P L + G +W K+ + + K + +E Sbjct: 806 IVFLPETTVKRGAGGS-------PLLVTEDGALLWCASGKNDCAVSAKARKLREDKESQE 858 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RLLYV +TRA ++LI+C + + WY +F + + ++ Sbjct: 859 ALRLLYVALTRARERLILCGRIDARTKDDKVGG-WYAAARAAFAHPDIAPGVRTIGDGET 917 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + PL P + + + PS ++ Sbjct: 918 --------AFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSRLEDTA 969 Query: 767 KTNLESLLSDNQTF---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + S L+ RG +IHKLLQ++ LP +R + + + Sbjct: 970 RVPAPSPLARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAE-RDLTDTQRTE 1028 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 + + +LE+ +S +EV+++G + + +SGR+D++ + + + +Y Sbjct: 1029 MASAAFEVLEDARFAAVFGPNSRAEVALAGTSAHLPQGLAVSGRVDRLVVDDARVLVVDY 1088 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 KT+ P IE ++AQ+++Y +L++ +P +++ L++ PK+ +P+ + A Sbjct: 1089 KTNRPSPDRIEDADTAYLAQMAVYVAVLREVFPGRTVEAALVWTDGPKLMPVPEKVMALA 1148 Query: 944 FAEIS 948 A ++ Sbjct: 1149 LARLA 1153 >gi|326387825|ref|ZP_08209431.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370] gi|326207871|gb|EGD58682.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370] Length = 1159 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 219/958 (22%), Positives = 389/958 (40%), Gaps = 53/958 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + GL + ++ F V +++ + T + Sbjct: 227 INRLLGLPADADRSMLAAHFTDRA-FPVVSLSRCLDALRGWATKTADGMIAPIATWLAAS 285 Query: 61 CIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 E F L T++ TP+ + + K+ PD + + +RD + Sbjct: 286 PEERAVSFDALERALFTKESTPK---YAKNLEKQDPDYVSHAEDVGEALEAVRDLVRAFA 342 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + +LT+ ++EAK + +DF+D I LL +R + WIR+K+D+ + Sbjct: 343 LADLLDPALTVGCRFARAWQEAKDREGFIDFDDQIRAAAALLTERAPADWIRFKLDRRFD 402 Query: 179 HILIDEVQDTSLIQWEV-IRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKR 236 H+L+DE QDT+ QW + + LT DFF G RTLF VGD KQ+I+ F G P+ Sbjct: 403 HVLVDEAQDTNAAQWRIVLDGLTGDFFTGAGKETDGARTLFVVGDYKQAIFRFQGTSPEN 462 Query: 237 VLREKRINQKR-------ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLS 288 R +R + A + + + L SFRS+ IL+ VD+ + GL+ Sbjct: 463 FDRARRRVENELLSLARMADDPTLELLDLGLGRSFRSSQTILSFVDRAIAGIGPARLGLA 522 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 G V LW+ V ++ + ++ + LA R Sbjct: 523 AAPELHEGQI-----LPGLVTLWQPVGLGETAELGAEDDTGGDEGWLAGTDRE---LAAR 574 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 IA + + S G+ R D+++LVRKR D L + + V G D Sbjct: 575 IARQVRQWLDEGFSLSKGRHRRATPGDVMILVRKRGDLAG---LIVARLHAEGVPVAGVD 631 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 R L LA+KD++A F + DDL+ +L SPL +S+ D+ R + +++ Sbjct: 632 RLRLGAPLAVKDMIAALTFCVQPGDDLNLAGLLVSPLIGWSQQDLLAHGY-RGKGVPLWD 690 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVID 527 +++ N + + EL+ A F P T IL G +GR+ ++R G E D Sbjct: 691 HLRATENAQTH---GALTRLRELLSRADFAPPAALLTWILVGPWQGRKALVARLGAEAND 747 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 +DE LN + SL + +KR N + VR+MTVH +KGL++P+ Sbjct: 748 PIDELLNAAMAYATAHVPSLAGFLHWFAAGDGDVKREAGGNADLVRVMTVHGSKGLQAPI 807 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V L D + + + + +P+ + + V + ++ +EE+ Sbjct: 808 VILADAADDPGKSRPAPVVL---MDDGERAVPLPPLRKDEKPLPVRSAEEIARREEREEH 864 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RLLYV MTRA + L + ++ + + +WY + D ++ Sbjct: 865 WRLLYVAMTRAEEALFVTGSLGPRDKGEVPEESWYAELARLLPTDGGLED---------- 914 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 + PL ++ +P +L I + L PS + Sbjct: 915 --PIWTRRWEEGALAPLPPKDPATGPAPSVVLPDELVRAIAPEPRPLRPLAPSALGEDEA 972 Query: 768 TNLESLLSDNQ--TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + RG ++H+LL+ + L R ++ + A P E L+ Sbjct: 973 PAPPTRPGPGARNAARRGTLLHRLLERLPDLAPEARAASAMAWVRRMATDLPENEQAGLV 1032 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 + +L NP S +EV ++ + +I+G ID++ I+ Q + I ++KT Sbjct: 1033 DAALAVLTNPEWQDVFGPGSLAEVPIAALV----GPRLINGTIDRLLITAQAVRIVDFKT 1088 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 P++++ IP ++ Q++ Y ++ +P K + L+Y + P++F +P L Sbjct: 1089 DRRPPEDLDAIPTAYLRQMAAYVAAMRVIHPGKRVEAALLYTATPRLFALPDELLAAQ 1146 >gi|56551994|ref|YP_162833.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ZM4] gi|56543568|gb|AAV89722.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ZM4] Length = 1162 Score = 509 bits (1310), Expect = e-141, Method: Composition-based stats. Identities = 243/956 (25%), Positives = 430/956 (44%), Gaps = 41/956 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 +K L ++ + + + +F + + + + + T K +Q Sbjct: 218 VKRALDLPFSDINQALE-EACDDDHFDFALLRQIAEANEKWDTATAHKNLAIIQDFVAAS 276 Query: 61 CIEERFSL--LSSFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 + SL S LTQK +K IT++I + + L K+ + I ++ R Sbjct: 277 PADRLASLGDFQSLVLTQKGELKKAPTGITKKIAPEYEEWMIALSKAIHQIISLKKRHE- 335 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + +A+L + + +++ KK++ ++DF D+I + LL+ + W+RYK+D+ Sbjct: 336 --FSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRT 393 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSFHGAEP 234 +HIL+DE QDT++ QW +I +L EDFF G++ S + R++FAVGD KQ+IY F G +P Sbjct: 394 TDHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVEASRSIFAVGDFKQAIYGFQGTDP 453 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-QGLSEDSTT 293 + + + ++ +G++ + L SFRST IL +VD++ + E++ G+ Sbjct: 454 QAFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H+S+R G+V LW+ + + N +E T D E+ LA R+A I Sbjct: 514 LQPHQSARSDLGGSVVLWQPISDYQEEGENTSEE--TDADDEEQLENGELELAIRLARQI 571 Query: 354 SNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + T R +DIL+LVR R + L + KI V G DR L Sbjct: 572 ETWLNPKTPLYLPALGRNAAPRDILILVRNRG---RLASLIVGCLHAQKIPVAGLDRLTL 628 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 T LA+ DL++ RF+L +DDL+ C+L SPL + ++ ++++ +R + E++++ ++K Sbjct: 629 TAPLAVSDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRK 688 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDE 531 + I E + A F +P+ F ++L K GR++ + R G E D ++E Sbjct: 689 -----SEAEKETWDIIREWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINE 743 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 LN L E + S Q + + IKR S N VRIMTVH AKGL++PVV L Sbjct: 744 LLNAALLLESETTPSFQRFLDWFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQAPVVILA 803 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNR 649 D +K I L++ + D+I K +E+ R Sbjct: 804 DATRDPHQSNGFRKEIITWPLDEANAPIPMPSNDDIAYLPSDFGDIINEKKAKDLQEHWR 863 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DE 708 LLYV TRA + L+I H + + + +WY + + Sbjct: 864 LLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITAMGIAWQEDAMWQQKAVYH 923 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 W + T P+ P ++ +P + + I + Y L PS + + Sbjct: 924 WEGRKKVTDIPKKQPT---------FPKEAMPSWIKNEIPEEPKPAYPLRPSDLVKDNTS 974 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 N RG ++H L + + LP +R+ + +A + A +L+ Sbjct: 975 NPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAALRNSLIKDA 1034 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTH 886 + NP+ S + +E ++ K+ + +ISG +D++ I + + I ++KT Sbjct: 1035 CDAMSNPVYRDIFSEKALAEAPIAAKV----GEHVISGTVDRLWIDRNKKRVHIVDFKTG 1090 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 VP E + + QL+ Y L+ +P+ ++ L+Y + PK+ Q L+ Sbjct: 1091 RRVPATKEQVSEAYQRQLAAYVVALEKIFPDYAIEASLLYTTAPKLVSFEQPFLHD 1146 >gi|241761923|ref|ZP_04760008.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373603|gb|EER63175.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1162 Score = 509 bits (1309), Expect = e-141, Method: Composition-based stats. Identities = 244/962 (25%), Positives = 435/962 (45%), Gaps = 41/962 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 +K L ++ + + + +F + + + + + T K +Q Sbjct: 218 VKRALDLPFSDINQALE-EACDDDHFDFALLRQIAEANEKWDTATAHKNLAIIQDFVAAS 276 Query: 61 CIEERFSL--LSSFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 + SL S LTQK +K IT++I + + L K+ + I ++ R Sbjct: 277 PADRLASLGDFQSLVLTQKGELKKAPTGITKKIAPEYEEWMIALSKAIHQIISLKKRHE- 335 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + +A+L + + +++ KK++ ++DF D+I + LL+ + W+RYK+D+ Sbjct: 336 --FSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRT 393 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSFHGAEP 234 +HIL+DE QDT++ QW +I +L EDFF G++ S + R++FAVGD KQ+IY F G +P Sbjct: 394 TDHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVEASRSIFAVGDFKQAIYGFQGTDP 453 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-QGLSEDSTT 293 + + + ++ +G++ + L SFRST IL +VD++ + E++ G+ Sbjct: 454 QAFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H+S+R G+V LW+ + + N +E T D E+ LA R+A I Sbjct: 514 LQPHQSARSDLGGSVVLWQPISDYQEEGENTSEE--TDADDEEQLENGELELAIRLARQI 571 Query: 354 SNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + T R +DIL+LVR R + L + KI V G DR L Sbjct: 572 ETWLNPKTPLYLPALGRNAAPRDILILVRNRG---RLASLIVGCLHAQKIPVAGLDRLTL 628 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 T LA+ DL++ RF+L +DDL+ C+L SPL + ++ ++++ +R + E++++ ++K Sbjct: 629 TAPLAVSDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRK 688 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDE 531 + I E + A F +P+ F ++L K GR++ + R G E D ++E Sbjct: 689 -----SEAEKETWDIIREWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINE 743 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 LN L E + S Q + + IKR S N VRIMTVH AKGL++PVV L Sbjct: 744 LLNAALLLESETTPSFQRFLDWFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQAPVVILA 803 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNR 649 D +K I L++ + D+I K +E+ R Sbjct: 804 DATRDPHQSNGFRKEIITWPLDEANAPIPMPSNDDIAYLPSDFGDIINEKKAKDLQEHWR 863 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DE 708 LLYV TRA + L+I H + + + +WY + + Sbjct: 864 LLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITAIGIAWQEDAMWQQKAVYH 923 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 W + T P+ P+ ++ +P + + I + Y L PS + + Sbjct: 924 WEGRKKVTDIPKKQPI---------FPKEAMPSWINNEIPEEPKPAYPLRPSDLVKDNTS 974 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 N RG ++H L + + LP +R+ + +A + A +L+ Sbjct: 975 NPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAALRNSLIKDA 1034 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTH 886 + NP+ S + +E ++ K+ + +ISG +D++ I + + I ++KT Sbjct: 1035 CDAMSNPVYRDIFSEKALAEAPIAAKV----GEHVISGTVDRLWIDRNKKRVHIVDFKTG 1090 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 VP E + + QL+ Y L+ +P+ ++ L+Y + PK+ Q L+ F++ Sbjct: 1091 RRVPATKEQVSEAYQRQLAAYVVALEKIFPDYAIEASLLYTTAPKLVSFEQPFLHDYFSQ 1150 Query: 947 IS 948 + Sbjct: 1151 MD 1152 >gi|114799862|ref|YP_760584.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC 15444] gi|114740036|gb|ABI78161.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC 15444] Length = 1168 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 239/965 (24%), Positives = 430/965 (44%), Gaps = 59/965 (6%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ G + ES I + D+ + L++ G T +A+ L++ + Sbjct: 235 LRADLG-APVESPAEILAAA--MGDRLPRDVIREAMLALLKGTATDQGRAEVLEKVLNAE 291 Query: 61 CIEERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLK------KSQDEFIKIRDR 113 E ++ + FFLT K +K N T+ + P L E + + ++ + Sbjct: 292 TPEAIWAAYAPFFLTDKGEFRKQNPYTKTPGQLCPLLPEYFQIKDGEGRETARVRELVEV 351 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 K F T A + + Y + K + LDF+DLI T LL+ +++W+ YK+ Sbjct: 352 LQRAKAFARTAALIRIGLPALEAYRDEKARRGALDFDDLIQKTRALLEADGMASWVLYKL 411 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH--SSPRTLFAVGDEKQSIYSFHG 231 D I+H+L+DE QDTS QW++IR+LT +F G+ PRT+F VGDEKQSIYSF G Sbjct: 412 DGSISHVLLDEAQDTSPDQWDLIRALTHEFGSGEGRDYSQDPRTMFIVGDEKQSIYSFQG 471 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE----NAQGL 287 AEP+R+L E R ++R + +E+ +SFRS ++LT VD V++ G+ Sbjct: 472 AEPERLLTETRRLEERMAG----AAGVEMLMSFRSVPEVLTYVDTVWNNSPPIDVGIGGM 527 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + H + R + G V++W D + + +W D + S + LA Sbjct: 528 PPRTADNTLHTARRWNEHGAVEIWPIDPKIADDETD----AWARPVDVVRATSPKAKLAT 583 Query: 348 RIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A + MI +GK +R + +D+L+LV KR L L LK + + V G Sbjct: 584 SVARAVRRMIDRGETVWDGKAQRATRPEDVLILVSKR-QGGLFDSLINALKAE-GLPVAG 641 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKICTQRHETE 464 DR ILTD + ++D + L RF DL+ +L+ P +DD +F + ++R + E Sbjct: 642 ADRLILTDFIGVQDCLNLMRFATLDLRDLTLAEILRGPFCGLVDDDQYLFSLASRRAKGE 701 Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFIS 519 T++ ++ + + + ++ + + P++F + +L G +Q + Sbjct: 702 TLWSRVKASDDPDVQQAARFLQGLFD----RAHLPPYEFLSHVLDRVGEGGQTGWEQLNA 757 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 R G D ++ L+ L ++ SSLQ ++ +E IKR + EVR+MTVH Sbjct: 758 RLGMPARDPIEALLSRALSHDSAGPSSLQSFVASMEAENVEIKRDLAEAGREVRVMTVHG 817 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGL++P+V L DT + + PS+ + +W P+ + Sbjct: 818 AKGLQAPIVILPDTTFKPKAS--------APSVLESANAVVWSPRKDTDAEASKRARAIA 869 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 + +EE+ RLLYV +TRA D+LII H + + + + Sbjct: 870 EAKAREEHRRLLYVALTRAQDRLIIAGHWQGQAGEDKTGYEKDSWYALCDAAMDLLPFEE 929 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + + E + + +KL +P Sbjct: 930 TDQGRRYGKVTTVAEADTDSSLGVGGLPEWALRPAPIDPVARKLSAPT------------ 977 Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 S + K + + + RG IH LLQ + LPE R+ +Y +++A Sbjct: 978 SLLGPKTRIVAPFDAAREERLKRGRAIHALLQYLPELPEDGREAAADAYLSRDAD-LTDG 1036 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 + + + ++ +P + +E ++ GK + +I+GR+D++ ++ + ++ Sbjct: 1037 QRAEMKAAALGVMRDPALGAIFQPGGRAEAAIIGKSKDLPEGTVINGRVDRLVVTPERVW 1096 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 + ++KT P E + T++AQ++ Y +LK ++P + +V L + P++ +P+ + Sbjct: 1097 VIDFKTDQPAPDRPEDVADTYVAQMAAYWAVLKTAFPEREVVAALCWTDGPRLMRLPEAQ 1156 Query: 940 LNKAF 944 L Sbjct: 1157 LLAVL 1161 >gi|103485653|ref|YP_615214.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] gi|98975730|gb|ABF51881.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] Length = 1166 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 214/955 (22%), Positives = 372/955 (38%), Gaps = 51/955 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ FGL + D +DI + G T L + + Sbjct: 226 LRAAFGL-PGGDPDAWMIDQLAGGAIAEADIKAVAASGAAWGTKTGLACSDVMVGWMTGD 284 Query: 61 CIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 L FLT K + + + D + + + +R + Sbjct: 285 TAARAAMLDELLGCFLTGKGDLRADFAGDKGR--MTDCVDSAVRIVEAASALRGTATAMR 342 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + A+ L Y AK++ + DF+DLI LL+ W+R+K+DQ + Sbjct: 343 IADELAAAWKLGSRFAEAYALAKREQGLADFDDLITLAGSLLRVSGFGEWVRFKLDQRTD 402 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDT++ QW ++ SL E+FF RTLF VGD KQ+I+ F G EP+ Sbjct: 403 HILVDEAQDTNMRQWGIVLSLAEEFFAVHGKDMDRARTLFTVGDRKQAIFGFQGTEPRAF 462 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 + + + AGQ F ++L ++RST IL V D + A L H Sbjct: 463 VAARDLFHALGERAGQDFEAVDLISNYRSTPAILEVADAWLAAGGTA--LMGLDGAEPPH 520 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTIS 354 R G V+LWE + + + + ++ ++ LA+ IA + Sbjct: 521 VPHRRAHAGQVELWEPLPVGKALGATEEADEGVDDNGNATAPARDPASMRLAKAIAAEVQ 580 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + I R + D+++LVR+R + + V G DRF LT Sbjct: 581 DWIANG-----KDGRPVAPGDVMILVRRR---RDLAARIVARLQALHVPVAGVDRFALTQ 632 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 LA++DLMA RF + DDL+ +L SPL +++DD++ R T Sbjct: 633 PLAVQDLMAAMRFAVQPHDDLNLAALLVSPLIGWTQDDLYDRTRGRGRTPIWMYLRAHQD 692 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFL 533 + + +++ +A + +P F +L G GR++ +R G E D +DE L Sbjct: 693 MMP----PATMATLRQILGMADYTTPFRFLETLLSGPIDGRRKLYARLGREARDPIDELL 748 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 N L E SL ++E+E IKR A VR+MTVH +KGL++P+V L D Sbjct: 749 NQALAFEARKTVSLLGFLAEIEGSAADIKRQTEARGGVVRVMTVHGSKGLQAPIVILADA 808 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + +P++ + R+ ++D K + EE+ RL YV Sbjct: 809 TDDA----AFGHRPFTVDVAAWEKLPVYAIGADERHGALADAYAKAKAAADEEHWRLFYV 864 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTW------YDMVYDSFHNDERVKKIKLTNSINKD 707 MTRA + L++ + T+ D + + + + + +N Sbjct: 865 AMTRAEEILVVAGVTRTAERTVPEASWHAAVSGVLDRLGHDWEDGGAAWGRRRVHRVNAG 924 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 W P +P L + P L PST+ Sbjct: 925 RWAPQAKKAKTAARAPTR-------------LPDWLHRTAPEETRPPRPLAPSTLGEDDV 971 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 RGL++H L + + + +R+ + A ++ Sbjct: 972 AAPPQGGERGAAVERGLLLHALFERLPPVAPDRRRAAALRWLAVQAPALDEPARGAMVDE 1031 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 + +L++P S +EV +S ++ I+ D++ ++ + + ++KT Sbjct: 1032 VLAVLDDPAHAPLFGPGSLAEVPLSAVVDGVVVAGIV----DRLRVTDDAVTVIDFKTGR 1087 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 H+P + ++ Q++ Y LK +P + + L+Y + P++ + L+ Sbjct: 1088 HLPGSAAEVQPAYLRQMAAYRDALKVIFPGRRIATALLYTAAPRLIALGDALLDA 1142 >gi|87200013|ref|YP_497270.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444] gi|87135694|gb|ABD26436.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444] Length = 1161 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 221/962 (22%), Positives = 395/962 (41%), Gaps = 52/962 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + GL + + L F + + + ++ G ++ A L Sbjct: 220 INRALGLGEDAGVAAL-AALCAEDAFDCQSVRRCMEMNAAWGTKGGIENANALGDWLSAT 278 Query: 61 CIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +LL + FLT K P+ T I KK PD + +R Sbjct: 279 PSRRLETIALLEACFLTAKGEPRS---TTNIEKKQPDYPGYASRVIACIEALRAERAKID 335 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + +L + + ++ AK + +DF+D I +LL +R + WIR+K+D+ + Sbjct: 336 LADLLETALGVGRRFALAWDAAKTREGFIDFDDQIRTAAELLTRRTTAEWIRFKLDRRFD 395 Query: 179 HILIDEVQDTSLIQWEV-IRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKR 236 HIL+DE QDT+ QW++ + L DFF G+ RTLF VGD KQ+I+ F G P+ Sbjct: 396 HILVDEAQDTNASQWQIVLEGLVSDFFTGEGQRGPAVRTLFVVGDYKQAIFGFQGTSPEN 455 Query: 237 VLREKRINQKRAT-------NAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLS 288 R +++ + ++ + L SFR+ A IL VD + GLS Sbjct: 456 FARASIRVKEQLAEVSAILRDPERELLELGLGQSFRTAAPILGFVDAAIGRIGWDRFGLS 515 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 + GTV LW V D+ + T + LA R Sbjct: 516 QMPEQHKGLP-----IPGTVGLWRVV--GDDAGEPGEDGEDTDEGEEGWLSRPDRELADR 568 Query: 349 IAYTISNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 IA + I G R+ A D+++LVRKRK+ L + + V G Sbjct: 569 IARQVRAWIDVGFPLGKGDTPRLANAGDVMILVRKRKELAG---LIVARLHARGVPVAGV 625 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 DR L LA+KDL+A RF DDL+ +L SPL +S++D+ + R E ++ Sbjct: 626 DRLRLGAPLAVKDLVAALRFAAQPLDDLNLAGLLVSPLIGWSQEDLLERGY-RPHGERLW 684 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVI 526 E++++ +++ + L+ A F P +L G GR++ ++R G E Sbjct: 685 EWLRRNEGPETF---EMMERLRALLARADFDPPQVLLHWLLVGPWDGRRKLVARLGGEAN 741 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 D +DE LN + + SL + + +KR + VR+MTVH +KGL++P Sbjct: 742 DPIDELLNAAMAYASANVPSLVGFLQWFDAGEGELKREAGKSDGLVRVMTVHGSKGLQAP 801 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L D + + +P+ + + + V + K++ +EE Sbjct: 802 IVILADAADDPDLSPPRGLEIVEDVMGARRKVPLPPLRKEEKAPAVIEAEAEAKRAEREE 861 Query: 647 YNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 + RLLYV MTRA + L I ++ + +WY + F + E Sbjct: 862 HWRLLYVAMTRAEEALFIAGAKGKVRRTSGGELPVDSWYAQLEPLFGDGEWEVDPLWGGR 921 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI- 762 + + +P+ +P+ L +P+ + P L PS++ Sbjct: 922 KTIGRPQDFVGRPAQADVSPVRA-----------ALPQVLLTPVGAEPRPPRPLAPSSLG 970 Query: 763 -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 D + RG ++H+L++ + + R+ ++ + + E Sbjct: 971 EDEASEPPTHPGPGAMIAARRGTLLHRLIERLPEVSPASREASGMAWLARAGSDFDEAER 1030 Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881 ++ S +L +P + DS +EV ++ + ++SG +D++ I ++ + I Sbjct: 1031 SAMVRSALAVLNHPEWSDVFGPDSLAEVPLAAVVA----GRVVSGTVDRLVIGRERVRIV 1086 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 ++KT P +P ++ Q++ Y L+ +P + L+Y P++F++PQ + Sbjct: 1087 DFKTARRPPASFTEVPAAYVRQMAAYVAALEAIHPGVPVEAALLYTHTPQLFVVPQEVIA 1146 Query: 942 KA 943 Sbjct: 1147 AQ 1148 >gi|197103666|ref|YP_002129043.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1] gi|196477086|gb|ACG76614.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1] Length = 1147 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 259/962 (26%), Positives = 413/962 (42%), Gaps = 51/962 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + + GL + E + + + + T +K A L+ ++T Sbjct: 224 VWDACGLEPGQDAEALERAA--VAALDRNLWRAAAEALAAG-TATDVKCAGQLRAVAETP 280 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + + L F + TP + K L+ L QD R+R ++ Sbjct: 281 TLSGALAAL--FTEKGEGTPATWVGKTSGLKAHEGLRMALLTEQDRLAAARERLRGARVA 338 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 TL +LTLA+ A Y K+ LDF DLI T LL R +AW+ YK+D I+HI Sbjct: 339 ADTLDALTLAEAYLAAYRVEKQLAGALDFADLIEKTRALLASRPAAAWVLYKLDGGIDHI 398 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP---RTLFAVGDEKQSIYSFHGAEPKRV 237 L+DE QDT+ QWE++R+LT +FF G+ RTLF VGDEKQSIYSF GA+P+R+ Sbjct: 399 LVDEAQDTAPDQWEIVRALTGEFFAGEALPRRGELDRTLFVVGDEKQSIYSFQGADPERL 458 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 + E R AG+ + + L SFRST ++L VD VF + H Sbjct: 459 ILETRRYVAEIAAAGRNGASVPLHASFRSTEEVLAFVDAVF------GAGVPPGVEPLEH 512 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 R G+ G V LW +E+W + D +ES+ LAR IA I +++ Sbjct: 513 IPMRAGERGCVDLWPL----EREPKGEAREAWDAPLDVEGEESATKRLARNIACEIRDLV 568 Query: 358 GTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + +R + D+L+LVRKR L + R LK I V G DR L++H+ Sbjct: 569 RRGDAVADRDGRRPARYGDVLILVRKR--GALFEEILRALK-HAGIPVAGADRLALSEHI 625 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 DLMAL RF L DDL+ +LKSP + + +F + R +++ + A Sbjct: 626 VFDDLMALARFALFPADDLTLAALLKSPFCDLDDAALFDLAHGRE--GSLWRTLLARAGE 683 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVIDVLDE 531 + ++ + A+ P F+ LG + R + + R G E D LDE Sbjct: 684 -RPDWAAAAGFLQAMREAAREHGPFGFYARALGVRGSDGRSMRSRLLRRLGAEAQDALDE 742 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 FL L E L+ L ++ +KR +EVR+MT H AKGLE+P+V L Sbjct: 743 FLAQVLAAEGRGVHDLETLAADFAGLDIIVKRELEGGRDEVRVMTAHGAKGLEAPIVVLP 802 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 +T S + P L G +W K+ + + EE RLL Sbjct: 803 ETTSDQGARGS-------PMLETADGGFLWCASGKADCEASAAARALRQDKETEESLRLL 855 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV +TRA ++LI+C SN K+ + W+ + F ++ ++ Sbjct: 856 YVALTRARERLILCG-RIPSNRKEDGLKGWWAAIRAGFEHEAIAPHLRQAACGEVLATRY 914 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 + P + F+ +PS + Sbjct: 915 GPDPEPLGRRVAADAVAAAAPAWSAVSPPPEAFARYA---------SPSDLGEGTVVAAP 965 Query: 772 SLLSDNQT---FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 S L+ Q F RG +IH+LLQ++ L +R + + L + + + Sbjct: 966 SPLAAAQGLGRFRRGDLIHRLLQLLPDLAPPERAAGAAALLRRETDLADD-QRAEMAAAA 1024 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 +LE+P S +EV+++G + ISGRID++ I + + ++KT+ Sbjct: 1025 LSVLEDPRFAEVFGPGSRAEVAIAGGAAALPPALRISGRIDRLVILPDRVLVADFKTNRP 1084 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948 P IE ++ Q+++Y +L + +P + + L++ PK+ +P+N + +A AE+ Sbjct: 1085 SPGRIEDADPAYLRQMALYSAVLAEVFPGRRIEAALVWTDGPKLMPVPENLMAQALAELR 1144 Query: 949 TK 950 Sbjct: 1145 RS 1146 >gi|85373841|ref|YP_457903.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis HTCC2594] gi|84786924|gb|ABC63106.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis HTCC2594] Length = 1150 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 222/962 (23%), Positives = 402/962 (41%), Gaps = 63/962 (6%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 GL + + + L F + ++ ++ + G ++ + ++ Sbjct: 221 RLLGLPSDYGEDDV-AVLCSDDAFAMPELRHCIATLEDWGTKGAVEAVEAVRDWMAGDAK 279 Query: 63 EER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + + T KN+ I K+ + + D + ++ + Sbjct: 280 ARLAGIGVFNGTLFTATGEKPKNLHH--IAKRDEGYEAQALAVLDAVNAVHEKMGLLALA 337 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + + +LTL + +++ K++ ++DF+D I + LLK ++ WIRYK+D++ +HI Sbjct: 338 EYLVPALTLGRNFALAWDDRKRREGLIDFDDQIRRASQLLKNSALADWIRYKLDRQFDHI 397 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRVLR 239 L+DE QDT+ QW++IR+LT DFF G RT+F VGD KQ+I+ F G P+ Sbjct: 398 LVDEAQDTNQAQWDIIRALTGDFFTGFGQREDKLRTIFVVGDYKQAIFGFQGTSPQNFAA 457 Query: 240 EKRINQKRATNAG------------------QKFSIIELPLSFRSTADILTVVDKVFSIP 281 +K I ++ A + + L S+R+ +L VD Sbjct: 458 QKEIYRREIDAAIANAEALARDTRSKPVVDLRALQDLGLDRSYRTAQPVLDFVDHAIEAI 517 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 G + R + G V LWE VV+ + P +E W Sbjct: 518 ----GHTSIGLEREADRHEGDTRPGYVALWEPVVAGAEDDGEPSEEGWLP--------GP 565 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 +A RIA + + + G KR DI+VLVRKR++ L + Sbjct: 566 ERAMADRIADQVREWLDKGHPLAKGTKRNAGPGDIMVLVRKRRELAG---LIVARLHARG 622 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 + V G DR L LA+KDLMA RF DDLS +L SPL +S++D+ + R Sbjct: 623 VPVAGVDRLRLGAPLAVKDLMAALRFAAQPLDDLSLANLLVSPLGGWSQEDLLEHGY-RP 681 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISR 520 + ++++++K + ++ + +L+ + P IL G +GR + ++R Sbjct: 682 DKVRLWDHLRKSEHPF---VVETVERLRQLLQRVDYELPEALLHWILTGPWRGRAKLVAR 738 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 G E D +DE +N +S+Q I + +KR + VR+MTVH + Sbjct: 739 LGREANDPIDELVNAAFAYSATDTASVQGFIQWFDAGEGELKREPGGDDGLVRVMTVHGS 798 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGL++P+V L D + +PI ++ V++ + K Sbjct: 799 KGLQAPIVILADATG--NPDASRTGGLELQEDTSGKSVPIPALPKDEKHGPVAEAEQAAK 856 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 + +EE+ RLLYV MTRA + L + KK + R++ + L Sbjct: 857 AAEREEHWRLLYVAMTRAEEALYVGGALGQRELKKGPAEDSWY---------ARLEPLFL 907 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 +++ W A PE + + +P PI + P L PS Sbjct: 908 DDALADPIWGARRERGALPEPIVSSGD---VDPPAQINLPDWATQPIGPEPKPPRPLAPS 964 Query: 761 TI-DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + + +G + Q RG+++H LL+ + + +R+ ++ + A Sbjct: 965 SAGEEQGASPPLPPEIAAQAARRGVLMHSLLERLPDVTPAEREVRARAWLAQQAPEIADD 1024 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 E +L +L+ P + D+ +EV ++ + +I+G D++ ++ + Sbjct: 1025 ERDEMLCRALAVLDEPGFAPIFAPDALAEVPLAAVVA----GQVIAGTADRLLVTDDEVL 1080 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 + ++KT P IE IP + I Q++ Y L+ YP+K++ ++Y P++F +P Sbjct: 1081 VVDFKTARRPPAAIEDIPASIIRQMAAYVAALESIYPDKNVRAGVLYTQTPQLFALPAAT 1140 Query: 940 LN 941 L Sbjct: 1141 LA 1142 >gi|149184293|ref|ZP_01862611.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21] gi|148831613|gb|EDL50046.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21] Length = 1159 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 210/969 (21%), Positives = 390/969 (40%), Gaps = 54/969 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 ++ G+ ++ E + +F V + + + +Q + Sbjct: 216 VRRLLGI-PVDADEHWVAEACSDRHFPVDTLRAMLPAFDGWNTKSAETSRGFIQHWLAIE 274 Query: 61 CIEERFSLL----SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 + + L + P + K P +K + D ++ +R Sbjct: 275 PEARLAEIDGFRQRNCILKKDGDPTSM---KGAEKNDPSFGDKQQVIADAVREVAERAAL 331 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + L + +EEAK + ++DF+DLI LL ++ WIRYK+D+ Sbjct: 332 LGLAAFVAPQLEAGRAFAKRWEEAKAREGLVDFDDLIHRAARLLSSSQMADWIRYKLDRS 391 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPK 235 +HIL+DE QDT+ QW ++++LT+D+F G RT+F VGD KQ+I+ F G P+ Sbjct: 392 FDHILVDEAQDTNKAQWAIVKALTDDYFDGLGARGDAVRTIFTVGDYKQAIFGFQGTSPE 451 Query: 236 RVLREKRINQKRATNAGQ------------KFSIIELPLSFRSTADILTVVDKVFSIPEN 283 + + + A + +L S+R+ +L+ VD Sbjct: 452 NFREARDYFRDKMDRAAVAAEEARANANTGRLQEFDLERSYRTNQTVLSFVDDAIRAI-G 510 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 +GL D + S G V LW+++ +++ W + D ++ A Sbjct: 511 PEGLGLDKSDGEHRGS---DTPGMVTLWKEIRIAEGGDDADEEKGWLARHDRKLADNIAR 567 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 +A G G+ R QA D++VLV+KR + L + + Sbjct: 568 QVADWFDTK-----GEGFTLVKGETRRAQAGDVMVLVQKR---RELASLIVARLYAHGVP 619 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 V G DR L + LA+KDLMA RF DDL+ +L SPL +S++D+ + R + Sbjct: 620 VAGVDRLRLGNPLAVKDLMAAIRFAAQPLDDLTLANLLVSPLIGWSQEDLL-VFGYRTKG 678 Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFG 522 ++E+ + + + + E++ A F SP IL G GR+ ++R G Sbjct: 679 VRLWEH---LRSSDEPRVAQTVHTLREILRRADFDSPQQLLHWILVGPMDGRRALVARLG 735 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 E D +DE LN + +SLQ I + +KR ++VR+MTVH +KG Sbjct: 736 REANDPIDELLNAANAFAASHVASLQGFIRWFDAGDGELKREAGEGGDQVRVMTVHGSKG 795 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 L++P+V L D+ + + + + + +P+ S + V + + Sbjct: 796 LQAPIVILADSAIRPDASGELTLEEQVLGAEETNTVPLPALTSDEKVGPVRAVEEVDAAR 855 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 + +E+ RLLYV MTRA + L I + K + + L + Sbjct: 856 SMQEHWRLLYVAMTRAEEALFIGGSLGPRDAKNGP-----------HEDSWYARLAALFD 904 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 + + + E P ++P P+ + P L PS + Sbjct: 905 TDTALDDPIWGARWEVGERAPSVPPVETTVPEPVCELPLWAKQPVGPEPRPPRPLAPSGL 964 Query: 763 -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + +G RG++IH LL+ + +P R + S+ + A E Sbjct: 965 GEAEGSDPPLPPEVAAGAARRGVLIHALLERLPEVPRDHRADRARSWLAQQAPDLDNTER 1024 Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881 + +L +LE P + +E+ ++ + + ++ G D++ ++ + I + Sbjct: 1025 EEMLARALAVLEEPGFADIFGAQALAEIPLAATV----EGQVVMGTADRLLVTPEKITVV 1080 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 ++KT P IP + + Q++ Y L+ YP +++ ++Y P++ +P +L Sbjct: 1081 DFKTARRPPASQGAIPDSTLRQMAAYVAALEAIYPGRTVEAAVLYTQTPQLIALPGERLA 1140 Query: 942 KAFAEISTK 950 A + + Sbjct: 1141 AYKAAFADR 1149 >gi|295687598|ref|YP_003591291.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC 21756] gi|295429501|gb|ADG08673.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC 21756] Length = 1153 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 251/962 (26%), Positives = 427/962 (44%), Gaps = 46/962 (4%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R G S E + + + ++ + G K A+ L ++ Q Sbjct: 221 RCGFDAPTSAEELAAKA--MARLDLGAWRAAATVLFDGGGKQDAKYAEALAAVARDQDAT 278 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 +L + F + TP K DL+E L Q + R++ K+ + T Sbjct: 279 LELALRALFTEGGEGTPATWPAKTSGLKSREDLREALLLEQAKLETAREQVRAAKVAEDT 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 +L LA + K LDF DLI T LL ++ +AW+ YK+D ++HIL+D Sbjct: 339 QNALLLAGLYIERHMAEKDARGALDFTDLIDKTRVLLTEKVEAAWVLYKLDGGVDHILLD 398 Query: 184 EVQDTSLIQWEVIRSLTEDFFVG-----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 E QDT+ QWE++R+LT DFF G + + RTLF VGDEKQSIYSF GA+P R+L Sbjct: 399 EAQDTAPEQWEILRALTADFFAGATSEGWSGRRAERTLFIVGDEKQSIYSFQGADPTRLL 458 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRH 297 E + R G + L +S+RST +L+ VD +FS PE +G+ +RH Sbjct: 459 EETQGYIARIEAVGAVGKGVPLTVSYRSTHQVLSFVDALFSDPETREGVPPPVGHDLVRH 518 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 R G G V LW ++E+W + D+ + S+ LA IA + ++ Sbjct: 519 ELFRHGHPGCVDLWPLTREL----PGEEREAWEAPVDAEGERSANRRLAEAIAAETAAIL 574 Query: 358 GTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + G+ R A DILVLVR+RK L + R LK + V G DR L+ Sbjct: 575 KRGDAVFDKELGRHRAAHAGDILVLVRRRK--VLFEEIIRALK-RRGVPVAGADRLSLSS 631 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 H+A +DL+ALGRF+L DDL+ +LK+P ++DDI+ + + T++ +Q+ + Sbjct: 632 HIAFEDLLALGRFVLFPNDDLTLAALLKAPFCGLADDDIYAL--AKSRRATLWTELQRRS 689 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVIDVL 529 + + + + P +F+ LG R + ++R G E + L Sbjct: 690 QERAE-WTAARAVLEWALAEGRRRQPFEFYAAWLGLTDEDGRSHRAKVLTRLGAEAEEAL 748 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 DEFL + EQ L+ L+++ +KR EVR+MT H +KGLE+P+VF Sbjct: 749 DEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAPIVF 808 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L +T + + P L + G +W K + + + +E R Sbjct: 809 LPETTVKRGAGGS-------PLLVTEDGGLLWCASGKGDCDASAKARRLRDDKESQEALR 861 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV +TRA D+LI+C + + + + H D L ++ Sbjct: 862 LLYVALTRARDRLILCGRIDARTKDDKVGGWYAAVRAAFAHADIAPHVRPL-----GEDE 916 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 A+ P P E + P + + PS I+ + Sbjct: 917 TAFLRYGPDPAPAPRAEE----DIRVPATAPDWMTHAAPPEPAAARYAAPSRIEDNARVP 972 Query: 770 LESLLSDNQTF---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 S L+ RG ++HKLLQ++ L ++ + + + + Sbjct: 973 APSPLARVAGLGRYRRGELVHKLLQILPDLAP-DQRASAARRLLAAERDLTDDQREEMAA 1031 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + +L++ + S +EV+++G + + +SGR+D++ + + + + +YKT+ Sbjct: 1032 AAFGVLDDARFSAVFGPGSRAEVALAGTSAHLPQGLAVSGRVDRLVVDEGRVLVVDYKTN 1091 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946 P IE ++AQ+++Y +L++ +P +++ L++ PK+ +P+ + +A A Sbjct: 1092 RPSPDRIEDADPAYLAQMAVYAAVLREVFPGRAVEAALVWTDGPKLMPVPEKVMAQALAR 1151 Query: 947 IS 948 ++ Sbjct: 1152 LA 1153 >gi|294084828|ref|YP_003551588.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664403|gb|ADE39504.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] Length = 1162 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 229/972 (23%), Positives = 403/972 (41%), Gaps = 63/972 (6%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 ++ + + + L + T + Sbjct: 216 RDDLDMPEADFVTQHIAEA--LAKIDDEALRAVAVALQNAKTETQRDRGAAFFAWLALDD 273 Query: 62 --IEERFSLLSSFFLTQKF-TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 R +LL T K +N+ +I + P + + + D I T + Sbjct: 274 EMRIARLNLLVDALFTTKGPRADRNLSNADIRAEYPPIVDVQRAVIDILTPILHMMATDR 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + T A HY+ K+ +LD++DLI TN LL + + + W+ +K+D I Sbjct: 334 CRELTTALYIFGAAFQRHYQSLKESRGLLDYDDLIAVTNRLLARSEAAQWVAWKLDNGIG 393 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVG--------------KNTHSSPRTLFAVGDEKQ 224 H+L+DE QDTS QW ++ L E FF G + +PR++FAVGD KQ Sbjct: 394 HVLVDEAQDTSPAQWTLLLRLVESFFDGSDMPVAASSIASDTADMDIAPRSVFAVGDFKQ 453 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIYSF GA+PK + + + + +A A F + L +SFRSTA IL +V+ + + Sbjct: 454 SIYSFQGADPKVLGENRTLLRNKAMAAEIDFRALSLSVSFRSTAPILGLVNDLIPDLDGI 513 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + H +R + G V++W + D+ + ++ + + + ++++ Sbjct: 514 EDF-------VSHDLARRHKGGFVEVWPII----DAPVDEEKTEGFTPANIASMQGASAV 562 Query: 345 LARRIAYTISNMIGTDTIF---SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 A +A T+ + IG + ++ R I A DIL+L+RKR + L + Sbjct: 563 AASHLARTLKSWIGKRPLPSSDNDHMPRKIMAGDILILLRKRD--VFFEQVLVAL-QEQG 619 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 ++V G DR L D + I+DL+ALG L +DDL +LKSPLF SE +F + R Sbjct: 620 VAVAGADRMRLVDQIEIQDLLALGDVALLPDDDLQLAALLKSPLFGISEAQLFDLAHDRG 679 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + ++ + + + E + S FF+ +L GR +F +R Sbjct: 680 SHSLFRQLMRYLGSN--DPLGRIADRLEEWCRLVDGGSVFSFFSKVL-VDGGRDKFRARL 736 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTA 580 G+ V + LD FL ++ SL ++ + +KR A + +EVR+MT+H A Sbjct: 737 GSSVDEALDHFLAVAQSYGESGGVSLTAFLAAVRAGGGDVKRDMDAGNVDEVRVMTIHGA 796 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE+P+V L D H + +D W S R + + Sbjct: 797 KGLEAPIVILPDMLRHSVPHSPLI-------TGEDQRFIYWEAGSHLRPPFLETARQKAS 849 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 EE NRLLYV +TRA D L+I + + + Y + F + V + Sbjct: 850 DLRAEEDNRLLYVALTRARDGLVIGGWEK--RNSRWLENSPYSRIKAYFTEHKDVV-EDV 906 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 + E + P + + + E L P + + L PS Sbjct: 907 DGVLRHIAKTVSEADSVFPSMPDDDAAMRVPDIASEPADTSWLHHPAPDLPPDARPLRPS 966 Query: 761 T-IDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 + L ++D++ RG + H+L +++ T+P+ +R + Sbjct: 967 EPANLYAPHPLGFGVTDSRTQAMALTRGRLAHRLFEMLPTVPQDQRNTVADRMIATV-DM 1025 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875 + L + +L +P + D+ +EV V+G + +SG+ID++ + Sbjct: 1026 LSPAQGAQLKNEVFTILNDPRFGNLFTPDALAEVPVTGMVRDRG----VSGQIDRLFVGD 1081 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 ++ I ++KT P T+ Q+++Y ++ + +PNK +VC LI+ ++ I Sbjct: 1082 DSVIIADFKTGIANEDSP---PETYQRQMALYAALIGEIFPNKPIVCWLIWTETARLQEI 1138 Query: 936 PQNKLNKAFAEI 947 + A A I Sbjct: 1139 TASMRALALARI 1150 >gi|294675594|ref|YP_003576209.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003] gi|294474414|gb|ADE83802.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003] Length = 1121 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 227/949 (23%), Positives = 384/949 (40%), Gaps = 46/949 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ GL+ + E + D LP + ++T + T+ A L Sbjct: 208 LRKVLGLAPDLRPETLP-DAVFLPGTDR--VIAAAIPLLKTQSATMKTLAAQLSLLDLLA 264 Query: 61 CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYK 118 + L+ L + + +T+ + PDL E + + R++ N Sbjct: 265 PGPADLARLADLCLVKDGSRVSSRFLTKGAIEAFGPDLAEDVLDLAERVRWAREQENALA 324 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 TLA A+ L K + LDF+DLI LL V+ W+ +++D I+ Sbjct: 325 TLNRTLALHDFARVLLPALALKKAQGGWLDFDDLIERAGALLSDPSVAQWVLFRLDGGID 384 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW VI L ++F G S RT+F VGD KQSIYSF GA+ Sbjct: 385 HILVDEAQDTSPGQWRVIERLADEFTSGDGARDSRRTIFVVGDRKQSIYSFQGADLTHFE 444 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 K + + + L SFRS+ IL +VD F + H Sbjct: 445 AMKSLFSAKFAAISRPLQDAALLHSFRSSLAILRLVDLTF-----RGDPALALGGAPEHL 499 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + G V LW V ++ W D +++ +LAR IA I M+ Sbjct: 500 AFHDKLPGRVDLWPVVPKPDKTEPEE----WDDPVDRPGADTAPVVLARAIAAEIRAMVD 555 Query: 359 TD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + R + A D L+LV++R L + K + V G DR L LA Sbjct: 556 AGVQLPGREGPRPVTAGDFLILVQRRSG--LFYEIILACKAQ-GLEVAGADRLKLGGELA 612 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 +KD++++ F+ + EDDLS L+SPLF +SED +F++ R ++ +++ + Sbjct: 613 VKDIVSVLAFLATPEDDLSLAEALRSPLFGWSEDQLFRLAQPRK--GYLWAALREAGDE- 669 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 + + +L+ + F P+D +L +GR++ ++R G E + +D + L Sbjct: 670 -----ATLTVLRDLLDRSDFLRPYDLIERLLTRHEGRKRLVARLGAEAEEGIDALIAQAL 724 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 EQ SL + L IKR + +R+MTVH +KG+E+P+V L DT Sbjct: 725 AYEQTEVPSLTGFLVWLGADEIEIKRQSDSAGTALRVMTVHGSKGVEAPIVILPDTAKLR 784 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 S + L GIP W + + +++ + + + E RLLYV MTR Sbjct: 785 NSQR--------GELLLAEGIPFWKSAAATLPPVLAQAQAEVLERQRHERLRLLYVAMTR 836 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DEWIAYEWST 716 A LI+ +++ +W+ +V + L+ + + + Sbjct: 837 AEKWLIVATA----GDEEEGAESWHALVSGGMKSAGTETVSALSEPLQALGPVLRFSHGD 892 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLS 775 TP+ E + +P + L+ S + E + LS Sbjct: 893 WPENGTPVGAAEVV-----RIALPNWARERVLPVHKTAKALSASDLGGPKALPGETAELS 947 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 RG +H LL+ + P + S E + LL ++L Sbjct: 948 TEAAMLRGRRLHLLLEHLPQAPSETWPDLAQSLLGFGNDRAFPDEIEALLTRALQVLTAV 1007 Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 + D+ +EV ++ ++ + G ID++ I I + +YK++ VP Sbjct: 1008 EKAGFLGPDTLAEVELTAELP-ELGGQRLHGIIDRLQIGPDRIRVLDYKSNAIVPNTAAE 1066 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944 +P + Q++ Y L+ YP +++ C L++ V + L +A Sbjct: 1067 VPLGLVRQMAAYRAALRQIYPGRAVECFLLWTETGAVMPLGDTLLEEAL 1115 >gi|329891017|ref|ZP_08269360.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC 11568] gi|328846318|gb|EGF95882.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC 11568] Length = 1119 Score = 489 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 243/947 (25%), Positives = 405/947 (42%), Gaps = 66/947 (6%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ E I D + ++ + L M TG+ T +A L A + Sbjct: 229 GADPQKTPEDIEADFLR--WLDRGEVRRMAEL-MATGSKTDKDRAAELIHAL---DHDWS 282 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 F L FLT +P+K++ T +K PD L QD+F+ RD+ K+ T+ Sbjct: 283 FHGLGVVFLTGSGSPRKSMAT---SKAPPDAAGWLADLQDKFLAARDQLRAAKVANDTIR 339 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 LTLA A YE AK + LDF DL+ T +LL R +AW+ YK+D ++H+LIDE Sbjct: 340 LLTLANAHAALYEAAKTAHGALDFSDLVARTVELLTVRSTAAWVLYKLDGGVDHVLIDEA 399 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ QW ++R+LT +FF + T RT+FAVGDEKQSIYSF GA P+R+ +E ++ Sbjct: 400 QDTAPEQWAIMRALTGEFFTVEGTD---RTVFAVGDEKQSIYSFQGARPERLRQEAQVYD 456 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 T AG F + L S+RST +L+ VD+VF+ PE A+ L ++ H ++R GQ Sbjct: 457 GLITGAGGAFEGVPLETSYRSTEAVLSFVDEVFATPERARALVGETGEIPHHTAARQGQP 516 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 G V+LW V + P++++WT D S+ +A+ +A I + + + + Sbjct: 517 GAVELWPLFV----DEAPPERDAWTDPVDQEGTASARKRMAQTLALEIKRQVESGAVVFD 572 Query: 366 --GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 G R D L+LVR+R + R LK V G DR L+ H+ DL A Sbjct: 573 KSGSARPCGYGDFLILVRRRD--ATFEEIIRALKA-AGAPVAGADRLKLSQHIVFDDLKA 629 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483 L RF L DDL+ +L+ P + ED +F++ + E ++ ++ Sbjct: 630 LARFALFPGDDLTLAEVLRGPFCDVDEDSLFELAGREKRDGLWRELKRRAD--ERPEWSR 687 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVIDVLDEFLNFTLR 538 + + A+ P FF+ +L GR + ++R G E + +DE LN L Sbjct: 688 ALDLLRAARG-ARDLDPFGFFSSLLNRVDATGQSGRARILTRLGREAEEAVDETLNQVLA 746 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E L+ ++ LE +KR EVR+MTVH AKGLE+PVV L DT + Sbjct: 747 AEGRGGIDLETCLALLEAADVEVKRELEGPRGEVRVMTVHGAKGLEAPVVILPDTTMKAK 806 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + +P + + SK ++ + +E RLLYV +TRA Sbjct: 807 AQG--PSLMPVPLEDGVEAWLMCPGSSKEDCPASAEARAAREARVGDESLRLLYVALTRA 864 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 D++I+ +++ W+ ++ ++F + + Sbjct: 865 RDRVIVMG---RGSKRAPEAGDWWSVIEETFGRLGDQVR---------ELDGGVRRYGAD 912 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 P++ P + Sbjct: 913 PDSLPAAVAAAQMRAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 972 Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 ++ + +L++ Sbjct: 973 -----------------------XXXXXXXXXXXXXXXXXXXXAEMIAAAFGVLDDARFA 1009 Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 S +EV+++G + ISGRID++ ++ Q + + ++K++ P + E Sbjct: 1010 PVFGPGSRAEVALTGTAPDLPSGVSISGRIDRLVVTPQRVLVVDFKSNRPAPDQAEDADP 1069 Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 +I Q++IY +L+ YP++++ L++ PK+ +PQ ++ A Sbjct: 1070 AYILQMAIYAAVLRRLYPDRAVEAALVWTDGPKLMALPQGLMDAALE 1116 >gi|94496379|ref|ZP_01302956.1| UvrD/REP helicase [Sphingomonas sp. SKA58] gi|94424125|gb|EAT09149.1| UvrD/REP helicase [Sphingomonas sp. SKA58] Length = 1144 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 211/946 (22%), Positives = 386/946 (40%), Gaps = 51/946 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + GL + + D F + ++ V + + G L++ + Sbjct: 222 IAAELGL-PDGDVDQWLADQCRDDIFDMRALDWIVRANADWGKGRGLERCDRIAAWRALD 280 Query: 61 CIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 L + + E + ++ Sbjct: 281 PAGRAAGLIELHRAWAKADGDIIDA---RGWVPPIDGYGEMAARLHSRCGELIALKLRAD 337 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 +L + Y AK+ +DF+DLI T LL++ ++ WIRYK+DQ I+ Sbjct: 338 YAALLAQALHAGRAYAREYATAKRLAGAVDFDDLIARTAALLEQPGIAEWIRYKLDQRID 397 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDT+ QW ++R+L E+FF G RT+F VGD KQ+I+ F G P+ Sbjct: 398 HILVDEAQDTNAAQWRIVRTLAEEFFSGAGAKGDKVRTVFTVGDFKQAIFGFQGTSPQNF 457 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 + + Q+ A +AG F + L SFRST +L VVD+ + + H Sbjct: 458 AAAQLLFQRDAMDAGHDFHSLSLDRSFRSTPAVLDVVDRTIATLRAER---LGLEAGEVH 514 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S G V LW+ VV+ + +++ + +LA+RIA I I Sbjct: 515 HDSANRHPGEVTLWKPVVANMTEDADGEEDW---------ADDQERVLAQRIARQIKQWI 565 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + + R ++A DI++LVR+R + L + +++V G DR L LA Sbjct: 566 DNGVMLESRG-RPVRAGDIMILVRRRSELAR---LIVARLYEEQVAVAGIDRLRLNAPLA 621 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 ++DL+A RF + ED+L+ +L SPL +++D++ R + Sbjct: 622 VRDLLAALRFAVQPEDELNLASLLVSPLIGWTQDELMNRLVGRRTGLWRHLNQTLDD--- 678 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFT 536 + + L+ +A F +P+ + I+ G GR++ I+R G E D ++E LN Sbjct: 679 -----EALGPLRNLLAVADFSTPYRYLEAIVSGPMDGRRKLIARLGAEAADPIEELLNAA 733 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 L EQ+ + SLQ I ++ I R + + +R++TVH AKGL++P+V L D Sbjct: 734 LAFEQDDHPSLQRFIDWFDRGEVEIVRDAAGQGDMLRLLTVHGAKGLQAPIVILADACLD 793 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + + + G+PI P+ R + D+ + + +EE+ RLLYV +T Sbjct: 794 PDAGNRA-------DMLEWNGLPILPPRKAERQGPIGDVAEEAAQIEREEHWRLLYVALT 846 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA ++L++ + + +W+ V + + + W A Sbjct: 847 RAEEKLVVAGSLGPRAKGEVKPESWFAAVEGAMISLGAQWEA-------DPLWGAARRWR 899 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776 + + P L + P L PS + Sbjct: 900 GAEQLPSKDAAVEDAPADLATDTPSWLRQAAPAEARPPRPLAPSAQVEDDVPYPPPTPAM 959 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 +G ++H L + + L ++R + + + L A E + L+ R+++ P Sbjct: 960 RAAAEKGRLLHALFERLPGLGANQRASAADRWLAQQG-LIDAYERQQLIDQALRVIDAPD 1018 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + +E ++ + + +I+G +D++ + + ++KT P + + Sbjct: 1019 FANLFGPGALAEAPIAAVV----GEAVIAGTVDRLCVGADRVQFVDFKTGRVAPSTLADV 1074 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 P +H+ Q++ Y L +P + + L+Y S P++ +P L Sbjct: 1075 PTSHLCQMAAYAAALGVIFPGRQIEAGLLYTSVPRLITLPPALLAA 1120 >gi|307292809|ref|ZP_07572655.1| double-strand break repair helicase AddA [Sphingobium chlorophenolicum L-1] gi|306880875|gb|EFN12091.1| double-strand break repair helicase AddA [Sphingobium chlorophenolicum L-1] Length = 1147 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 220/946 (23%), Positives = 395/946 (41%), Gaps = 52/946 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L GL + I + F + ++ + + G L++ + + Sbjct: 224 LLRELGLPEGDIEAHIAEQ-CADDLFDMRTLSWIAQANADWGTGRALERCDRIARWRNLG 282 Query: 61 CIEERFSL--LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 E SL L + + + + + + + ++ Sbjct: 283 PAERAASLTDLHGVWAKADGELISTA--KGWAPQVDGYGDAIARMHERCGELLGIRVRAA 340 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 L + Y EAK+ +DF DLI N+ LL + ++ WIRYK+DQ I+ Sbjct: 341 YAVLLAKGLQAGRVYARSYAEAKQLAGAVDFNDLIANSAQLLSQPGIADWIRYKLDQRID 400 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDT+ QW ++RS+ E+FF + RT+F VGD KQ+I+ F G P+ Sbjct: 401 HILVDEAQDTNADQWRIVRSIAEEFFTAEWEPGQKVRTIFTVGDFKQAIFGFQGTSPQNF 460 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN-AQGLSEDSTTTIR 296 + + ++ A AG F + L SFRST +L VVD+ + GL + Sbjct: 461 AAAQFLFERDARQAGHLFHDLSLERSFRSTPAVLDVVDRTIATLSAERFGLEAGEVRHVS 520 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 G V LW+ V++ + +++ +LA+ IA I Sbjct: 521 ANRF----PGEVLLWKPVIAGLSEEAEGEEDW---------AADQERVLAQTIARQIRQW 567 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 I + + R + A DIL+LVR+R + L + K++V G DR L L Sbjct: 568 IDDGLMLESRG-RPVTAGDILILVRRRSELAR---LIVARLYEEKVAVAGIDRLRLNAPL 623 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 A++DL+A RF + EDDL+ +L SPL +++D + R +++++ + + Sbjct: 624 AVRDLLAALRFAVQPEDDLNLAALLVSPLIGWTQDALMDRLIGRRVG--LWQHLTQTLD- 680 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNF 535 +++ + L+ A F +P+ + IL G GR++ I R G E D ++E LN Sbjct: 681 -----AALLEPLRGLLGQADFTTPYRYLEAILSGPMDGRRRLIERLGAEAADPIEELLNA 735 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L E + Y SLQ I ++ I R +A + +R++TVH AKGL++P+V L D Sbjct: 736 ALAFENDDYPSLQRFIDWFDRGEVEIVRDAAAQGDMLRLLTVHGAKGLQAPIVILADACL 795 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + G+PI P+ R + + + + E+ RLLYV + Sbjct: 796 DPDAGNRA-------DSLEWNGLPIIAPRKAERQGAIGQVAEEASAVERAEHWRLLYVAL 848 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++L++ + + +WY V + + + + W A Sbjct: 849 TRAEERLVVTGSLGPRAKGEVKPESWYAAVEGALISLDAEWEA-------DPLWGARRRW 901 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 H P E I + P L P + P L PS + Sbjct: 902 RGHEILPPKAAETDIAENGAVHGEPGWLRKPAPVEARPPRPLAPSATVEDDVPYPPPTPA 961 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 RG +H+L + + +P R+ + + A +++ R++E+P Sbjct: 962 MRDAAERGRWLHRLFERLADVPPGDRRARADKWLAQQGLG-DAARRHDVIEQALRVIEDP 1020 Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 D+ +E ++ + + +I+G +D++ I + + ++KT P +E Sbjct: 1021 QYAALFGPDALAEAPIAAVV----GEAVIAGTVDRLRIGDDLVQLIDFKTGRISPLAVEE 1076 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 +P H+ Q++ Y L+ +P + + L+Y + P++ +P + L Sbjct: 1077 VPLAHVRQMAAYAAALQVIFPGRRIEAGLLYTAAPRLITLPSDLLA 1122 >gi|294011636|ref|YP_003545096.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S] gi|292674966|dbj|BAI96484.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S] Length = 1147 Score = 482 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 216/947 (22%), Positives = 393/947 (41%), Gaps = 52/947 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--SQ 58 L GL + I + F + + + + G L++ + + Sbjct: 224 LLRELGLPEGDIDAHIAEQCGDE-SFDMRTLVWIAQANADWGTGRALERCDRIARWRALD 282 Query: 59 TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 S L + + + + + + + ++ Sbjct: 283 PAGRAAALSDLHAVWAKAGGELIST--GKGWAPSVDGYGDAIARMHECCSELLGLRVRAA 340 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 +L + Y EAK+ +DF+DLI NT LL + ++ WIRYK+DQ I+ Sbjct: 341 YAALLARALHAGRAYARAYAEAKRLAGAVDFDDLIANTAQLLSQPGIADWIRYKLDQRID 400 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDT++ QW+++ +L +FF G+ RTLF VGD KQ+I+ F G P+ Sbjct: 401 HILVDEAQDTNVSQWQIVGALAAEFFAGEGAKGDRVRTLFTVGDFKQAIFGFQGTSPEAF 460 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN-AQGLSEDSTTTIR 296 + + Q+ A +A Q F + L SFRST +L VVD+ + GL + Sbjct: 461 RAAQIVFQRHAEDASQMFHDLSLQHSFRSTPAVLDVVDRTIATLSAERFGLEAGEVRHVS 520 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 G V LW+ V++ + +++ +LA+ IA I Sbjct: 521 ANRF----PGEVLLWKPVIAGLSDEAEGEEDW---------AADQERVLAQTIARQIRQW 567 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 I + + R + A DI++LVR+R + L + K++V G DR L L Sbjct: 568 IDDGLMLESRG-RSVTAGDIMILVRRRSELAR---LIVARLYEEKVAVAGIDRLRLNAPL 623 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 A++DL+A RF + EDDL+ +L SPL +++D++ R + Sbjct: 624 AVRDLLAALRFAVQPEDDLNLAALLVSPLIGWTQDELMDRLIGRRVGLWQHLTQTLDG-- 681 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNF 535 +++ + L+ A F +P+ + IL G GR++ + R G E D ++E LN Sbjct: 682 ------ALLEPLRGLLGQADFTTPYRYLEAILSGPMDGRRRLVERLGAEAADPIEELLNA 735 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L E + Y SLQ I ++ I R +A + +R++TVH AKGL++P+V L D Sbjct: 736 ALDFENDDYPSLQRFIDWFDRGEVEIVRDAAAQGDMLRLLTVHGAKGLQAPIVILADACL 795 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + G+PI P+ R+ + + + + E+ RLLYV + Sbjct: 796 DPDAGNRAGSL-------EWNGLPIIAPRKGERHGEIGRVAEEASAVERAEHWRLLYVAL 848 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++L++ + + +WY V + + + + W A Sbjct: 849 TRAEERLVVTGSLGPRAKGEVKPESWYAAVEGALISLDAEWEA-------DPLWGARRRW 901 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 H P E + + + P L P + P L PS + Sbjct: 902 RGHETLPPKAAEADVAENGADHDEPDWLRKPAPAEARPPRPLAPSAAVEDDVPYPPPTPA 961 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 RG +H+L + + +P R+ + + +++ R++ +P Sbjct: 962 MRDAAERGRWLHRLFERLAEVPPDDRRARADKWLAQQGLG-DEARRHDVIEQALRVIGDP 1020 Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 D+ +E ++ + + +I+G +D++ I + + + ++KT P +E Sbjct: 1021 QYAALFGPDALAEAPIAAVV----GEAVIAGTVDRLRIGEDLVQLVDFKTGRISPLAVEE 1076 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 +P H+ Q++ Y L+ +P + + L+Y S P++ +P L + Sbjct: 1077 VPLAHVRQMAAYAAALQVIFPGRRIEAGLLYTSAPRLIALPTELLAR 1123 >gi|298290318|ref|YP_003692257.1| double-strand break repair helicase AddA [Starkeya novella DSM 506] gi|296926829|gb|ADH87638.1| double-strand break repair helicase AddA [Starkeya novella DSM 506] Length = 1144 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 255/961 (26%), Positives = 399/961 (41%), Gaps = 47/961 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L GL + I + +E G + L+ A Sbjct: 220 LAAAVGLDRPIASRDIEHRIIAEALIARGAWLGLGQALIEEGGNCARRGRSLLEAA--AA 277 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 E + FL + P + I K P L +D + + + Sbjct: 278 PDEGTADTYARVFLKEDGEPYGDSQFGAAPIRAKYP----LLLAERDRLAPLAQLLSAAR 333 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + L L + YE AK VLDF DL+ LL SAW+ YK+DQ I+ Sbjct: 334 ALERSRGVLILGREAARRYERAKAARGVLDFSDLVDAARRLLA-SGASAWVHYKLDQGID 392 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS--------PRTLFAVGDEKQSIYSFH 230 H+L+DE QDTS QWEVIR L +FF G+ + PRTLF VGDEKQSI+SF Sbjct: 393 HVLLDEAQDTSPEQWEVIRPLVAEFFAGEGARAEARYGAASLPRTLFVVGDEKQSIFSFQ 452 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+P+R +R + G F IEL SFRS IL VD VF QGLS Sbjct: 453 GADPRRFDTVRRELMRLTGGVG--FEHIELRHSFRSAPGILAAVDTVFHAETAYQGLSAL 510 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + + H + V+LWE ++W D+ + LAR+IA Sbjct: 511 AEPPV-HEAIHAALPSLVELWEPEAPSEKVD----IDAWQRPLDAPAADDPKGRLARKIA 565 Query: 351 YTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I+ I + R + D L+LVR+R L + R LK + +++V G DR Sbjct: 566 GHIAARIREGFPVTGRHGTRPARPGDFLILVRRRD--SLFEAIIRELK-EARVAVAGADR 622 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + H+A+ DLMALG +L+++D+L+ C LKSPLF + D+ K+ E + E Sbjct: 623 LTVAQHIAVMDLMALGDALLARDDELALACALKSPLFGLDDSDLMKL---APERAGLLED 679 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529 ++ + + L A+ P DF+ +LG ++GR I+R G E D L Sbjct: 680 ALFARAGENPHWRAAAERLRRLRPEARRLRPFDFYARVLGRERGRAAMIARLGPEAADAL 739 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 DE L E SL ++ L + KR A +EVR+MTVH AKGLE+P V Sbjct: 740 DEMLALARSYENVEAPSLAGFLAFLRRGGAEAKRDMEAGRDEVRVMTVHGAKGLEAPYVI 799 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L DT S + L D + P K ++ + Q+EY R Sbjct: 800 LADTTSG--PMTRRAAGLLRVELPDGRRAALHAPSKKGDTPAMARARAQGDAAQQDEYRR 857 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV +TRA L++ +K WYD+V + + ++ + Sbjct: 858 LLYVALTRAESALVLAGA---DGGRKRPADCWYDLVRGALE----PEAVEQPAAGFAGTV 910 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + + H + ++ + S + L PS Sbjct: 911 RRWRSAVHEEIIAAPAVAAIAAAPDEAERALARALSRPIEEPAARAALRPSASSLLSAAP 970 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 + +RG ++H+L+ + +LP +R A + + LL Sbjct: 971 ---EGPEALALHRGELLHRLMAALASLPPEERAAPGRRLLAA-AGDFEEAAREELLTEAL 1026 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 +L P + S +EV + G++ +SGRID++++ I I ++KT V Sbjct: 1027 GVLAVPGLADLFGPGSLAEVPLVGELE---DGTPVSGRIDRLAVLGDRILIADFKTDRRV 1083 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 P+E +P H+ Q+++Y ++L+ YP + + L+Y + P + + L + +++ Sbjct: 1084 PREASSLPPAHVRQVALYARLLRRLYPGRPIEARLVYTAGPLAHALGADVLERIVESVTS 1143 Query: 950 K 950 + Sbjct: 1144 Q 1144 >gi|170738831|ref|YP_001767486.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46] gi|168193105|gb|ACA15052.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46] Length = 1157 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 256/956 (26%), Positives = 446/956 (46%), Gaps = 49/956 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ GL+ +E+ I + + + + TG T K+A L +A+ + Sbjct: 223 LREALGLAPDEAVGTIEARMREGAPADWAGLAAQ----LRTGKATDEKRADALARAAAAE 278 Query: 61 CIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 ++ L + F + ++ T+ + + ++ L Q ++R+R Sbjct: 279 EPQD-LPLYLAAFFKDEGEGDPYAPASLGTKAVPEA---VRRLLLDEQARLGRLRERLKA 334 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + T A TLA ++ E K + LDF+DLI T DLL + D + W+ YK+D+ Sbjct: 335 ARAQERTAALFTLAAEIHRRVEAQKARLGALDFDDLIHKTLDLLTRVDSA-WVLYKLDRG 393 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP--RTLFAVGDEKQSIYSFHGAEP 234 ++H+LIDE QDT+ QWE++R +TEDF G+ P RT FAVGD KQSIYSF GA P Sbjct: 394 VDHVLIDEAQDTNPEQWEILRRITEDFCAGEGARRGPLPRTRFAVGDPKQSIYSFQGAAP 453 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS-EDSTT 293 + ++ ++ A AG F + L LSFRS +L VD F++ E+ +GLS D Sbjct: 454 EEFETTRQAWRRAARGAGLAFEDVGLTLSFRSAKGVLRGVDATFALAEHYRGLSFGDGAI 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 H + R+G G V+LW + + + +W D++ + A ++ARR+A + Sbjct: 514 GTVHETVRVGAPGQVELWPTEEPCEEPEPD----AWVQPVDAVEAGAPALVVARRVARAV 569 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + + R+ + +IL+LVRKR + + R LK + + V G DR + Sbjct: 570 RHWTREG----DEHGRIWRPGEILILVRKR--SAAFEGVIRALKAE-DVPVAGQDRLDIA 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473 H+A+ DL+A GR L +DDL+ C LK+PL ++DD+ ++ +R E++ + + Sbjct: 623 AHIAVMDLVAAGRAALLPDDDLTLACALKTPLVGLTDDDLVRLAARRAPEESLAAALARH 682 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533 A G + +AQ P F+ +LG GR + ++R G E D +D FL Sbjct: 683 AGAGDPAALRGAAALATWRRLAQESGPFGFYADLLGPLGGRARLVARLGGEAGDAIDVFL 742 Query: 534 NFTLRNEQN-SYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 + EQ SL +S + T+KR + +EVR+MTVH AKGLE+ Sbjct: 743 TAAAQAEQGADAPSLTGFLSRYAPSGGRDAGGHTVKRDLESARDEVRVMTVHGAKGLEAG 802 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLND--DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 ++ L+D + + + D +P+W P + + L + + Sbjct: 803 LLVLIDGCEPLGRNDPPLLPVPVRGAGGVADGTVPVWSPSKGHDCPAGAAAREALHERAR 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 +E+NRLLYV MTRA D+L+I + E +W +MV + + Sbjct: 863 QEHNRLLYVAMTRAKDRLVIAPYRGRDRETP---ESWCEMVRRG--------LVAAFGGV 911 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + E T T + P LF P+ + L PS + Sbjct: 912 ERAEMPYGPAETWRHGAALPAAPATAVPPAPPGERPDWLFRPVAPEAEPLPPLRPSGLGA 971 Query: 765 KGKTNLESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + S D RG++IH LL+ + L +R ++ A PA E + Sbjct: 972 ADEPRRSQPRSGDPAARRRGVLIHALLEHLPALAPERRAAAARAFVAARAPGLPAAEREA 1031 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 L S+ RLL +P ++ + +EV+++G ++ + + GRID+++++++ +++ ++ Sbjct: 1032 LATSVLRLLADPDLSVLFGPLARAEVALAGTVSLGGVEWPVHGRIDRLAVTEEAVWLCDF 1091 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 KT P E +P AQ+++Y +L +P+++++ LL++ + P + + + Sbjct: 1092 KTGR-PPAEGAPVPGGMAAQVALYAALLARIHPDRAVIPLLVWTAGPVIRRLSGAE 1146 >gi|148260455|ref|YP_001234582.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5] gi|146402136|gb|ABQ30663.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5] Length = 1157 Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats. Identities = 252/934 (26%), Positives = 420/934 (44%), Gaps = 35/934 (3%) Query: 22 PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF--SLLSSFFLTQKFT 79 + F +I +S+ + + +KA L + + S F T K Sbjct: 236 AIVEFDDREIRGALSIIKDRSSTKACEKAGELLSWLNLETEARLACQDIWISGFFTGKGD 295 Query: 80 PQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137 P+ +++++ ++ + P LK ++ Q ++ +DR ++ + A L + A Sbjct: 296 PRAMSSLVSKGLDAEEPTLKATIEAEQGRLLRAKDRLAARRLADLSAALAQLVLPIQAAE 355 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 + AK+ + D+ DLI LL + W+ YK+D I+HIL+DEVQD + QWEVI Sbjct: 356 QSAKQGSARFDYADLIARAAQLLVDPGAA-WVLYKLDGGIDHILLDEVQDIAPAQWEVID 414 Query: 198 SLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 ++ +FF G + RT+FAVGD KQSIYSF GA+ + R + AG ++ Sbjct: 415 AIVAEFFAGTGARDGTARTVFAVGDRKQSIYSFQGADLASFDAWRAGIGARVSAAGARWH 474 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 L SFRSTA IL++VDKVF G+ + H +SR GQ G+V LW V Sbjct: 475 EGSLATSFRSTAPILSLVDKVFERGPARSGVVM-PDEVLAHGASRAGQAGSVTLWPLVP- 532 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 + NP+ +W Q S+ LAR +A I+ + T+ + R + DI Sbjct: 533 ---ADPNPELAAWAPAETYAEQASARRRLARSVAGWIAANV--GTMRLESRGRTLAPGDI 587 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 L+LVR+R + + + V G DR +LT+ A+ DL+AL R +L EDD+ Sbjct: 588 LILVRQRNE---FGVALTRALKEAGVKVAGLDRMVLTETRAVADLIALARAVLLPEDDVE 644 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496 +L SPL S++++ + R T+ + + A+ + F I E A Sbjct: 645 LATVLASPLGGLSDEELMNLALDRK--GTLRDALFTRADEHV-AFAAARDLIAEAQARAD 701 Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556 F +P+ FF +LG GR + ++R G E + LDE L L + SLQ ++ L+ Sbjct: 702 FVTPYRFFAEVLGPMGGRARLLARLGPEAAEPLDELLATALDYGTHEAPSLQGFLAALDA 761 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 +KR A + VR+MTVH AKGL++P+V L DT Q ++ + + Sbjct: 762 AAAEVKREAEAAGDSVRLMTVHGAKGLQAPLVILPDTTGQRGKEARDL-LYWIDAPQGGG 820 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 +PI+ P++ R+ V + EEYNRLLYV +TRA D LI+C + + + Sbjct: 821 EVPIFCPRADMRSAAVRQALASASDRGFEEYNRLLYVALTRAEDHLIVCGA---ATKSRL 877 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + WY+ V F + V +I+ ++ + P+ T L Sbjct: 878 PETCWYESVRAGFERLDGVAEIEAEPPLDGTILYYAAPQSAPPDRLAAISTATAAPLPGW 937 Query: 737 QKIPKKLFSPIKNDIN-EPYILNPSTIDTKGKTNLES-------LLSDNQTFNRGLIIHK 788 + + L PS T L + RG +IH Sbjct: 938 IGPETGWRAAPPPEPKQRIDRLVPSRSAEGESTGLAAASPLAGRGTGREAAMARGRLIHA 997 Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 LLQ + LP R+ Y + E +++ ++ +L++P +T S +E Sbjct: 998 LLQHLPDLPPGDRREAARRYLAQPGHRLGDVEQTDVIDAVFDVLDHPDLTALFGPASRAE 1057 Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 ++G + + + ID++++ + I +YKT P + IP + AQL+ Y Sbjct: 1058 APIAGIVGGVEIGGL----IDRLAVLPDRVLIADYKTDRQPPADPAGIPEAYAAQLAAYA 1113 Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 +L + YP + + +L++ + V +P +L + Sbjct: 1114 AVLAEIYPGRRIDAVLVWTARGHVMPVPAARLAR 1147 >gi|326403648|ref|YP_004283730.1| double-strand break repair helicase AddA [Acidiphilium multivorum AIU301] gi|325050510|dbj|BAJ80848.1| double-strand break repair helicase AddA [Acidiphilium multivorum AIU301] Length = 1157 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 250/934 (26%), Positives = 420/934 (44%), Gaps = 35/934 (3%) Query: 22 PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF--SLLSSFFLTQKFT 79 + F +I +S+ + + +KA L + + S F T K Sbjct: 236 AIVEFDDREIRGALSIIKDRSSTKACEKAGELLSWLNLETEARLACQDIWISGFFTGKGD 295 Query: 80 PQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137 P+ +++++ ++ + P LK ++ Q ++ +DR ++ + A L + A Sbjct: 296 PRAMSSLVSKGLDAEEPTLKATIEAEQGRLLRAKDRLAARRLADLSAALAQLVLPIQAAE 355 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 + AK+ + D+ DLI +LL + W+ YK+D I+HIL+DEVQD + QWEVI Sbjct: 356 QSAKQGSARFDYADLIARAAELLVDPGAA-WVLYKLDGGIDHILLDEVQDIAPAQWEVID 414 Query: 198 SLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 ++ +FF G + RT+FAVGD KQSIYSF GA+ + R + AG ++ Sbjct: 415 AIVAEFFAGTGARDGTARTVFAVGDRKQSIYSFQGADLASFDAWRAGIGARVSAAGARWH 474 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 L SFRSTA IL++VDKVF G+ + H +SR GQ G+V LW V Sbjct: 475 EGSLATSFRSTAPILSLVDKVFERGPARSGVVM-PDEVLAHGASRAGQAGSVTLWPLVP- 532 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 + +P+ +W Q S+ LAR +A I+ + T+ + RV+ DI Sbjct: 533 ---ADPDPELAAWAPAETYAEQASARRRLARSVAGWIAANV--GTMRLESRGRVLAPGDI 587 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 L+LVR+R + + + V G DR +LT+ A+ DL+AL R +L EDD+ Sbjct: 588 LILVRQRNE---FGVALTRALKEAGVKVAGLDRMVLTETRAVADLIALARAVLLPEDDVE 644 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496 +L SPL S++++ + R T + + + + + I E A Sbjct: 645 LATVLASPLGGLSDEELMNLALDRKGTLRDALFTRADEHAAFAAAR---DLIAEAQARAD 701 Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556 F +P+ FF +LG GR + ++R G E + LDE L L + SLQ ++ L+ Sbjct: 702 FVTPYRFFAEVLGPMGGRARLLARLGPEAAEPLDELLATALDYGTHEAPSLQGFLAALDA 761 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 +KR A + VR+MTVH AKGL++P+V L DT Q ++ + + Sbjct: 762 AAAEVKREAEAAGDSVRLMTVHGAKGLQAPLVILPDTTGQRGKEARDL-LYWIDAPQGGG 820 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 +PI+ P++ R+ V + EEYNRLLYV +TRA D LI+C + + + Sbjct: 821 EVPIFCPRADMRSAAVRQALASASDRGFEEYNRLLYVALTRAEDHLIVCGA---ATKSRL 877 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + WY+ V F + V +I+ ++ + P+ T L Sbjct: 878 PETCWYESVRAGFERLDGVAEIEAEPPLDGTMLYYAAPQSAPPDRLAAISTATAAPLPGW 937 Query: 737 QKIPKKLFSPIKNDIN-EPYILNPSTIDTKGKTNLES-------LLSDNQTFNRGLIIHK 788 + + L PS T L + RG +IH Sbjct: 938 IGPETGWRAAPPPEPKQRIDRLVPSRSAEGESTGLAAASPLAGRGTGREAAMARGRLIHA 997 Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 LLQ + LP R+ Y + E +++ ++ +L++P +T S +E Sbjct: 998 LLQHLPDLPPGDRREAARRYLAQPGHRLGDVEQTDVIDAVFGVLDHPDLTALFGPASRAE 1057 Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 ++G + + + ID++++ + I +YKT P + IP + AQL+ Y Sbjct: 1058 APIAGIVGGVEIGGL----IDRLAVLPDRVLIADYKTDRQPPADPAGIPEAYAAQLAAYA 1113 Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 +L + YP + + +L++ + V +P +L + Sbjct: 1114 AVLAEIYPGRRIDAVLVWTARGHVMPVPAARLAR 1147 >gi|190570633|ref|YP_001974991.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019116|ref|ZP_03334923.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356905|emb|CAQ54283.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995225|gb|EEB55866.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 1089 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 241/875 (27%), Positives = 429/875 (49%), Gaps = 64/875 (7%) Query: 62 IEERFSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + + L+ FL + +K+I IT+ +K D+++ ++ Q+ N+Y+ Sbjct: 271 DDNKIENLAKVFLKSESYEKKSISSIITKGALEKFEDVEQMIESIQNALFTHVKDINSYQ 330 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 +F T + L++ K Y K KN +LD++D+I +LL WI + +DQ+I+ Sbjct: 331 IFGRTSSLLSIFKVYVDLYNSEKSKNALLDYDDIINLATNLLSNPGYKDWILFNLDQKID 390 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QD S+ QW++I +L +FF G + RTLF VGD KQSIY F GA P Sbjct: 391 HILVDEAQDNSISQWKIITNLCNEFFTGGD---EKRTLFVVGDVKQSIYRFQGANPHLFN 447 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 ++ + G+ + +L SFRST ++L +V+++F+ + + I+H Sbjct: 448 YMQQYFHTKTG--GRDWVSCQLEKSFRSTPEVLMLVERIFNN---FREEISFNDNKIKHI 502 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 R G +++W + + + Q T D + ++ +LA+ IA I N + Sbjct: 503 PYRENDQGYIEIWPLLPGYEEEEQQALQIHLTQRKDYVVKD---RLLAQAIAQRIHNWLN 559 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 I K R I+ +DI++LVR ++ + V+G D F + D++A+ Sbjct: 560 EGRIL-VAKDRHIEPRDIMILVR---QRNVLVDYIISELKKVNVPVIGRDYFRIMDYIAV 615 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DL+AL F+L Q +DL+ +LKSPLFNF+EDD+F I R E +++E +Q + Sbjct: 616 QDLIALAEFLLLQANDLALANVLKSPLFNFTEDDLFNIAYNRKEQ-SLWEKLQDYQEIIS 674 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538 ++ ++ LI+++Q SP FT IL GR++F +R G E ++LDEF+N L+ Sbjct: 675 NE-------LNYLINLSQTKSPLTLFTHILRT--GRKKFAARLGLECFEILDEFMNLVLQ 725 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E SLQ + +++ P IK + N VRIMT+H +KGL++P+VFLVDT + Sbjct: 726 FEH---PSLQAFVQWIKENNPEIKNDMQSKLNAVRIMTIHKSKGLQAPIVFLVDTNTVPR 782 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++I L D P W ++ N + + + K EY RLLYV +TRA Sbjct: 783 NSENI--------LFDATEAPFWCGKN--SNAYCNQVKREKKLEDYNEYLRLLYVALTRA 832 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 D+L I ++ + +WYD+V ER K I K++ + ++ Sbjct: 833 EDELYILG------KEPVQKGSWYDLVIQYGALYERKKLYLQP--IFKEKVEVLCMNANY 884 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 P + + + + E ++ + + + + + Sbjct: 885 PSIYKKRDYFDVPVI-SPPSNLSMSLQHVTLEPGEKKPVSSTGMTDENAGMTKRSIGTTD 943 Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 ++ RGLIIH +LQ + + + +RKN++ Y + +++ + I N Sbjct: 944 SYARGLIIHSILQYMPKIEKDRRKNWVRKYLD---SINTSEDKDEIYSKILTF--NEKYD 998 Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP-QEIEHIP 897 + SE+ +SG I+ K +++ R+D++ I++ I +YK+HH+V I Sbjct: 999 YLFDLEGKSEIPLSGTID--GKPVLV--RLDRLCITEDKAIIIDYKSHHNVSISSSNEIK 1054 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 Q+ IY+ ++++ YP+K + C++I++ + + Sbjct: 1055 ----KQMLIYKTLVQEVYPDKQVECVVIWMEDLTL 1085 >gi|148555593|ref|YP_001263175.1| double-strand break repair helicase AddA [Sphingomonas wittichii RW1] gi|148500783|gb|ABQ69037.1| Double-strand break repair helicase AddA [Sphingomonas wittichii RW1] Length = 1142 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 222/946 (23%), Positives = 397/946 (41%), Gaps = 46/946 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L++ F + L + E I ++ + G T L+ A TL Sbjct: 223 LRHAFDVPLGDVEEAIEA---ACDGLDLAAFEAVARANATWGTATGLRDADTLAAFLAAG 279 Query: 61 CIEERFSLLSSFF--LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 L F LT+ F P+K + K ++ + D+ ++ Sbjct: 280 PAARAAMLEEVLFVVLTKSFEPRK--YAAGLLKADAGYPDQCVRLADQIGRLLGWRRRAA 337 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + A L + Y EAK+ ++DF+DLI T LL + + W+RYK+DQ+ + Sbjct: 338 LATAIGAGLRAGQAYAQAYAEAKRAAGLVDFDDLIRATVRLLDEPGMGDWVRYKLDQQTD 397 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDT+ QW ++ L E+FFVG PRT+F VGD KQ+I+ F G +P Sbjct: 398 HILVDEAQDTNAAQWAIVGRLAEEFFVGAGARGGAPRTIFTVGDFKQAIFGFQGTDPVEF 457 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 R + +A ++F + L SFRS +L +VD++ + + T Sbjct: 458 ERARLGFAIKALQVDREFLDLSLDRSFRSAPAVLELVDRLIADLGHE---EMGLFTPAER 514 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 ++ G V LW+ + + + ++ + A LAR++ I + Sbjct: 515 HAAHHAMPGRVTLWKPLSIEEAMDDDGEEGFIDDA-----TRAYAGRLARQVRSWIDERL 569 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 KKR I+ +DIL+LVR+R D + L + K+ V G DR LT L Sbjct: 570 WLG-----SKKRPIRPEDILILVRRRAD---LASLIVARLHAEKVPVAGVDRLRLTAPLV 621 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 +KDL+A RF + +EDDLS +L SPLF +S+++++++ R + + ++ + Sbjct: 622 VKDLLAAVRFAVQREDDLSLAALLVSPLFGWSQEELYRVGFGRR--GPLVDAVRAKGD-- 677 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFT 536 + ++ A F +P+ F +L G GR++ + R G+E D +DE L Sbjct: 678 ----ADTNAALDAILARADFTTPYRFLEHLLTGPLDGRRKLLRRLGDEARDPIDELLGAA 733 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 L+ E + ++LQ + ++ I R SA + VR+MTVH +KGLE+P+V L D + Sbjct: 734 LQFEGTATATLQRFLDWFDRGDVEITRDPSAPLDAVRVMTVHGSKGLEAPLVILADATAD 793 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + +P+ P+ + + L K ++E+ RLLYV +T Sbjct: 794 --PDLSPDRRLDWAIEEGAEPVPVLRPRKAEMVEALRKDAEALAKRERQEHWRLLYVALT 851 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA + L+I +WY + + + W+ Sbjct: 852 RAQEHLVIGGTLGVRARGVPPASSWYQAIDQAMAGLGCPP-------VEDPLWVEARHYH 904 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776 T ++ P L P + P L PS++ + + Sbjct: 905 GSVAATGTTAPARPRRGAPVLAEPGWLRRPAPPEARPPRPLAPSSLGLDDVPDPPPSAAL 964 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 RG ++H L + + + +R++ + +A + A L R++ +P Sbjct: 965 RAAARRGTLLHALFERLPAIDPDRRRDAALRWLLGSAGVEEAGIAGALADDACRVIADPR 1024 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 D+ + + ++SG +D++ ++ I + ++KT P ++ + Sbjct: 1025 FAAIFGADALA----EAPVAAVVAGEVVSGTVDRLLVAADRILVVDFKTGRRAPADLAAV 1080 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 P H+ Q+S Y L +P + + L+Y + P + +P L+ Sbjct: 1081 PDHHLRQMSAYAAALGVIFPGRPVAAALLYTAGPTLIELPAAVLDA 1126 >gi|42520239|ref|NP_966154.1| UvrD/Rep/AddA family helicase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409977|gb|AAS14088.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 1089 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 249/926 (26%), Positives = 442/926 (47%), Gaps = 82/926 (8%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------QQASQTQCIEERF----- 66 ++ L + + + + E G+ ++ L + + R+ Sbjct: 225 DEIHDLQSETIEHVERLAEILSE-GSKRDQSYSEILYSTVIPAGIQKKRTSVTRWNDTKV 283 Query: 67 SLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 L+ FL + +K+I T+ I +K D ++ ++ Q+ N+Y++FK T Sbjct: 284 ENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQIFKRT 343 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + L + K Y K KN +LD+ D+I +LL + WI + +DQ+I+HIL+D Sbjct: 344 SSLLGVFKVYVDLYNSEKSKNALLDYNDIINLATNLLSNPNYKDWILFNLDQKIDHILVD 403 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QD S+ QW++I +L ++FF G + RTLF VGD KQSIY F GA P ++ Sbjct: 404 EAQDNSISQWKIITNLCDEFFAG---NDEKRTLFVVGDVKQSIYRFQGANPHLFNYMQQY 460 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + G+ + +L SFRST ++L +VD++F+ + + I+H R Sbjct: 461 FHTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFNDNEIKHVPHREN 515 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 G +++W + + + + Q T + + + +LA+ IA I N + I Sbjct: 516 DQGYIEIWPALPRRKEKEQQALQIPLTCRENYI---IADRLLAQTIANRIHNWLNEGRIL 572 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 K R I+ +DI++LVR ++ + VVG D F + D++A++DL+A Sbjct: 573 -VAKDRHIEPRDIMILVR---QRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQDLIA 628 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483 L F+L Q +DL+ LKSPLFNF+EDD+F I R E +++E IQ ++ S+ Sbjct: 629 LAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEH-SLWERIQDYSVVIYSE--- 684 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 ++ LI++++ SP FT IL G+++F +R G E +VLDEF+N L+ E Sbjct: 685 ----LNYLINLSRIESPLALFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQFEN-- 736 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 SLQ + +++ P IK + N VRIMT+H +KGL++P+VFLVDT + + + I Sbjct: 737 -PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRNSESI 795 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + D +P W ++ N + + K EY RLLYV +TRA D+L Sbjct: 796 --------IFDGTEVPFWCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELY 845 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 I ++ + +WYD++ + + + KK + I K++ + ++P Sbjct: 846 ILS------KEPVQKGSWYDLI--TKYGEPYEKKQRDLQPIFKEKVEVLCVNANYPYIYK 897 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783 + + + S ++ L S + + + + RG Sbjct: 898 KRDYFDVPVISLPPALAHSSVS------SQRVTLESSEKEGAEWIPVSATWMTDGYA-RG 950 Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843 LIIH +LQ + + + +RKN++ Y +++ + I N Sbjct: 951 LIIHSILQYMPKIEKERRKNWVRKYLDN-----ISEDKDEIYSKILAF--NEKYGYLFDL 1003 Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903 + SE+++SG I+ K +++ R+D++ I+Q I +YK+H +V + Q Sbjct: 1004 EGKSEITLSGTID--GKSVLV--RLDRLCITQDKAIIIDYKSHRNVSVS---LLNEIKKQ 1056 Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSE 929 + IY+ ++++ YPNK + C++I+V + Sbjct: 1057 MLIYKTLVQEIYPNKQVECVVIWVED 1082 >gi|58584432|ref|YP_198005.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418748|gb|AAW70763.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 1119 Score = 455 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 260/936 (27%), Positives = 447/936 (47%), Gaps = 75/936 (8%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 E E + ++ + + +K + L+ + + Q L S T+ + Sbjct: 238 EATEQIERL-AEILSKGSKRDRNYSKMLDLTSSSFIQVADTRIQKLDS-SATRWNDISIE 295 Query: 68 LLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 L FL + +K+I IT+ +K P ++ ++ Q+ N+Y++FK T Sbjct: 296 NLVKVFLKSESCEKKSISSIITKSTLEKFPGAEQVIENIQNAVFTHVRDINSYQIFKRTS 355 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 + L + K Y K KN +LD+ D+I +LL D W+ + +DQ+I+HIL+DE Sbjct: 356 SFLDIFKVYIDLYNSEKSKNALLDYNDIIDLATNLLSNPDYKNWVLFNLDQKIDHILVDE 415 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QD S+ QW++I +L ++FF+ + RTLF VGD KQSIY F GA P ++ Sbjct: 416 AQDNSISQWKIIANLCDEFFI---RNDEKRTLFVVGDVKQSIYRFQGANPHLFNCMQQYF 472 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 ++ G+ + +L SFRST + LT+VD++F+ + + I+H R Sbjct: 473 HTKSG--GKDWISCQLEKSFRSTPETLTLVDRLFNN---FREEISFVDSEIKHIPYREND 527 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 G V++W + + + Q D + + +LA+ IA+ I N + I Sbjct: 528 QGYVEIWPLLPRCKEEEQQALQIHLMHRKDYIITD---RLLAQAIAHKIHNWLNEGRIL- 583 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 K R I+ +DI++LVR+R L+ ++ LK I VVG D F + D++A++DL+AL Sbjct: 584 VAKNRHIEPRDIMILVRQRN--MLVDYVISELK-KANIPVVGRDYFRIMDYIAVQDLIAL 640 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 F+L +DL+ LKSPLFNF+EDD+F I R E +++E +Q ++ + + Sbjct: 641 TEFLLLPTNDLALANALKSPLFNFTEDDLFNIAYDRKEQ-SLWERLQNYS-------EDI 692 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544 +++LI+++ SP FT IL G+++F +R G E +VLDEF+N L+ E Sbjct: 693 YSKLNDLINLSHIESPLTLFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQFEN--- 747 Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 SLQ + +++ P IK + N VRIMT+H +KGL++P+VFLVDT + + + I Sbjct: 748 PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPKNSESI- 806 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 + D G P ++ N + + K EY RLLYV +TRA D+L I Sbjct: 807 -------VLDAMGAPFLCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYI 857 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 ++ + +WYD++ + + + KK + I K++ + ++P Sbjct: 858 LG------KEPVQKGSWYDII--TKYGEPYEKKYMELHQIFKEKVEVLCVNANYPYIYKK 909 Query: 725 EREETIKQLMDEQKIPKKL-FSPIKNDINEPYI---------LNPSTIDTKGKTNLESLL 774 I ++ + SP + +P + + Sbjct: 910 RDYFNIPAVLPPPNLSILFQHSPSPSQYPLLSPQCFDTGIHSFSPLDSSVTHWDDKKRNT 969 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 + RGLIIH +LQ + + + +RKN+I Y + K + I N Sbjct: 970 WMTDGYTRGLIIHSILQYMPKIEKDRRKNWIGKYLDN---INIRKNKDEIYRKILAF--N 1024 Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP-QEI 893 D SE+++SG IN K +++ R+D++ I+Q I +YK+H +V + Sbjct: 1025 EKYDYLFDLDGKSEITLSGTIN--GKPVLV--RLDKLCITQDKAIIIDYKSHRNVSVSSL 1080 Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 I Q+ IY+ ++++ PNK + C++I+V + Sbjct: 1081 NEIK----KQMLIYKTLVQEICPNKQVECMVIWVED 1112 >gi|225630221|ref|YP_002727012.1| helicase, UvrD/Rep family [Wolbachia sp. wRi] gi|225592202|gb|ACN95221.1| helicase, UvrD/Rep family [Wolbachia sp. wRi] Length = 1099 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 241/873 (27%), Positives = 424/873 (48%), Gaps = 68/873 (7%) Query: 63 EERFSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 + + L+ FL + +K+I T+ I +K D ++ ++ Q+ N+Y++ Sbjct: 288 DTKIENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQI 347 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 FK T + L + K Y K KN +LD+ D+I +LL D W+ + +DQ+I+H Sbjct: 348 FKRTSSLLGVFKVYVDLYNSEKSKNALLDYNDIIDLATNLLSDPDHKDWVLFNLDQKIDH 407 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 IL+DE QD S+ QW++I +L ++FF G + RTLF VGD KQSIY F GA P Sbjct: 408 ILVDEAQDNSISQWKIITNLCDEFFAG---NDEKRTLFVVGDVKQSIYRFQGANPHLFNY 464 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 ++ + G+ + +L SFRST ++L +VD++F+ + + I+H Sbjct: 465 MQQYFHTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFNDNEIKHVP 519 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 R G +++W + + + + Q T + +LA+ IA I N + Sbjct: 520 HRENDQGYIEIWPALPRRKEKEQRALQIPLTC---KEGYTIADRLLAQTIANRIHNWLNE 576 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 I K R I+ +DI++LVR ++ + VVG D F + D++A++ Sbjct: 577 GRIL-VAKDRHIEPRDIMILVR---QRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQ 632 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DL+AL F+L Q +DL+ LKSPLFNF+EDD+F I R E +++E IQ ++ S Sbjct: 633 DLIALAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEH-SLWERIQDYSVVIYS 691 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 + ++ LI++++ SP FT IL G+++F +R G E +VLDEF+N L+ Sbjct: 692 E-------LNYLINLSRTESPLALFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQF 742 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E SLQ + +++ P IK + N VRIMT+H +KGL++P+VFLVDT + + Sbjct: 743 EN---PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRN 799 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + I + D P W ++ N + + K EY RLLYV +TRA Sbjct: 800 SESI--------IFDGTEAPFWCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAE 849 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 D+L I ++ + +WYD++ + + + KK + I K++ + ++P Sbjct: 850 DELYILS------KEPVQKGSWYDLI--TKYGEPYEKKQRGLRPIFKEKVEVLCVNANYP 901 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 + + + S ++ L S + + + + Sbjct: 902 YIYKKRDYFDVPVISLPPALAHSSVS------SQRVTLESSEKEGAEWIPVSATWMTDGY 955 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839 RGLIIH +LQ + + + +RKN++ Y + +++ + I N Sbjct: 956 A-RGLIIHSILQYMPKIEKERRKNWVRKYLDN---INISEDKDEIYSKILAF--NEKYGY 1009 Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899 + SE+++SG I+ + +++ R+D++ I+Q I +YK+H +V + Sbjct: 1010 LFDLEGKSEITLSGIID--GEPVLV--RLDRLCITQDKAIIIDYKSHRNVSVS---LLNE 1062 Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 Q+ Y+ ++++ YPNK + ++I+V + + Sbjct: 1063 IKKQMLTYKTLVQEIYPNKQVEFMVIWVEDLTL 1095 >gi|148284261|ref|YP_001248351.1| ATP-dependent DNA helicase UvrD [Orientia tsutsugamushi str. Boryong] gi|146739700|emb|CAM79510.1| ATP-dependent helicase, UvrD/rep/AddA family [Orientia tsutsugamushi str. Boryong] Length = 1154 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 237/914 (25%), Positives = 416/914 (45%), Gaps = 57/914 (6%) Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 ++ + + FLT ++N+I+Q+ K PDL E Q++ +++ DR NT Sbjct: 261 LDYSSFIQQLDEIMALFLTNNGLKRRNLISQDFKNKYPDLSEYFSLLQEDILQVHDRLNT 320 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 K+ +ST ++ + Y++ K + LD++DLI T+ LL+ WI YK+DQ Sbjct: 321 LKIIESTYHLYRISTAVLHFYQQYKLSHNYLDYDDLIRYTHKLLRNTSSKDWILYKLDQS 380 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 I+HIL+DE QD SL QW ++ +L D G ++ T F VGD+KQ+IYSF GA+ + Sbjct: 381 IDHILVDEAQDNSLEQWNIVLTLLNDLLAG-GNKNNNSTFFVVGDKKQAIYSFQGADVEV 439 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 R A + F + L +S+RST ++L VV VF+ S ++ Sbjct: 440 FNTLSRELNSSFNVAKKPFKSVSLDVSYRSTHEVLNVVHAVFTDISLQMPELFSSDDLVK 499 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES--SASILARRIAYTIS 354 + +R G VQLW+ VV D+ Q S S+ +LA++IA+ ++ Sbjct: 500 LKCNREADHGLVQLWDIVVENKSKDGKEVFWPIADALDNGIQTSMQSSYMLAKQIAHYVN 559 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 I + + + K+ IQ D L+LVR+R + + V G DR L D Sbjct: 560 LQILSKRVLPS-TKQAIQCSDFLILVRRRNE---FVKQLVSELRKLNLKVSGIDRVSLQD 615 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 HL+I DL+AL +F++ +DDL+ C+LKSP + +E+DI+ +C + +++++++ Sbjct: 616 HLSIIDLIALAKFVIDPDDDLNLACLLKSPFIDCAEEDIYFLCRSKKHKDSIWQFLTTIE 675 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 + +Q ++ +H+ I + +P FF L++ RQ I+ ++ D++DEFL Sbjct: 676 KDNLY-YQSIVSKLHKFIVLYCSSTPDYFFHLVIEVLNYRQVLININIDDGNDIIDEFLK 734 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 ++ +SL+E I + IKR + + IMTVH AKGL++P+V L DT Sbjct: 735 VVEYFFKSFSNSLREFIIWFDSNNIEIKRDVDT-QDCINIMTVHAAKGLQAPIVILPDTT 793 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + L ++ G +W QSK +N + LK + +EY RLLYV Sbjct: 794 --------TLPISPSGILWNNDGNMLWSIQSKHCDNYLKTQAGILKHADYQEYLRLLYVA 845 Query: 655 MTRASDQLIICKHSNTSN--------------EKKSNQRTWYDMVYDSFHNDERVKKIKL 700 MTRA D+LIIC ++ + K + + N +++ Sbjct: 846 MTRAEDELIICGYNTAATLPQRCWYNIIKESMSKIPGISRRECNLDFTCINKVVYNRVES 905 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI---KNDINEPYIL 757 ++ + +++ + LE + I+ + + K L I + ++N L Sbjct: 906 SSELLTQIINSFQEEAASKYSNLLECKSHIQDISQAEHDYKSLVKQIFDFRFELNRILEL 965 Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 +++ ++ S L N G++ HK+L+ I I + + Sbjct: 966 KFLSVNLISLSSF-SPLEGEHGINYGVVCHKILEEITKNRN------IKLFLNTSYVKLL 1018 Query: 818 AKEYKNLLLSITRLL-ENPMMTTAMSC-DSYSEV--------------SVSGKINCPKKD 861 + KN + I +L N ++ + SEV S + Sbjct: 1019 TIKQKNKVEEILNVLIANQEFNYLLNSYELKSEVNLGIMCLSDNSDIRSNNDAFYIDDTK 1078 Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921 + + RID ++I +I I +YKT VP+ + +++ QL Y I+K YP ++ Sbjct: 1079 VFVFKRIDLLAIKNNHIVIVDYKTDFLVPETQLEVQSSYLKQLKSYHDIIKLIYPMHTVN 1138 Query: 922 CLLIYVSEPKVFII 935 ++++ I Sbjct: 1139 TKILWLENVCFMNI 1152 >gi|189182928|ref|YP_001936713.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi str. Ikeda] gi|189179699|dbj|BAG39479.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi str. Ikeda] Length = 1155 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 237/918 (25%), Positives = 421/918 (45%), Gaps = 64/918 (6%) Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 +R + + FLT ++N+I+Q+ K DL E Q++ +++ DR NT Sbjct: 261 LDYSSFIQRLDEIMALFLTNNGLKRRNLISQDFKNKYHDLSEYFSLLQEDILQVHDRLNT 320 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 K+ +ST ++ + Y++ K + LD++DLI T+ LL+ WI YK+DQ Sbjct: 321 LKIIESTYHLYRISTAVLHFYQQYKLSHNYLDYDDLIRYTHKLLRNTSSKDWILYKLDQS 380 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 I+HIL+DE QD SL QW ++ +L D G ++ T F VGD+KQ+IYSF GA+ + Sbjct: 381 IDHILVDEAQDNSLEQWNIVLTLLNDLLAG-GNKNNNSTFFVVGDKKQAIYSFQGADVEV 439 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 R A + F + L +S+RST +IL VV VF+ S ++ Sbjct: 440 FNTLSRELNSSFNVAKKPFKSVSLDVSYRSTQEILNVVHAVFTDISLQMPELFCSDDLVK 499 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQ---QESWTSYFDSLPQESSASILARRIAYTI 353 + +R G VQLW+ VV + S+ +LA++IA+ + Sbjct: 500 LKCNRAADHGLVQLWDIVVENKSKDDKEVFWPIADASIANGIQTSMQSSYMLAKQIAHYV 559 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + I + + + K+ IQ D L+LVR+R + + V G DR L Sbjct: 560 NLQISSKRVLPS-TKQAIQCSDFLILVRRRNE---FVKQLVSELRKLNLKVSGIDRVSLQ 615 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473 DHL+I DL++L +F+++Q+DDL+ C+LKSP + +E+DI+ +C + +++++++ Sbjct: 616 DHLSIIDLISLAKFVIAQDDDLNLACLLKSPFIDCTEEDIYFLCRSKKHKDSIWQFLTTI 675 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533 + +Q V+ +H+ I + +P FF L++ RQ I+ ++ D++DEFL Sbjct: 676 EKDNLY-YQSVVSKLHKFIDLYCSSTPDYFFHLVIEVLNYRQVLINVNIDDGNDIIDEFL 734 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ +SL+E I + IKR + + IMTVH AKGL++P+V L DT Sbjct: 735 KVVEYFFKSFSNSLREFIIWFDSNNIEIKRDVDT-QDCINIMTVHAAKGLQAPIVILPDT 793 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + L ++ G +W QSK +N + + K + +EY RLLYV Sbjct: 794 T--------TLPISPSGILWNNDGNMLWRIQSKHCDNYLKTQAEISKHADYQEYLRLLYV 845 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK----------------- 696 MTRA D+LIIC ++ + + QR WY+++ +S + Sbjct: 846 AMTRAEDELIICGYNTAAT---APQRCWYNIIKESMSKIPGISRRECNLDFTCINKVVYN 902 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI---KNDINE 753 +++ ++ + + + + + LE + ++ + + K L I + D+N Sbjct: 903 RVEFSSELLTQIINSVQEEAAYKYSNLLECKSDVQDVNQAEHDYKSLVKQIFDFRFDLNR 962 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813 L +++ ++ S L N G++ HK+L+ I I + + Sbjct: 963 ILELKFLSVNLISLSSF-SPLEGEHGINYGVVCHKILEEITKNRN------IELFLNASY 1015 Query: 814 KLWPAKEYKNLLLSIT-RLLENPMMTTAMSC-DSYSEVSVSGK--------------INC 857 + KN + + L+ N ++ + SEV+V Sbjct: 1016 VKLLTIKQKNKVEEVLNALIANQEFNYLLNSYELKSEVNVGVMCLSDHSDISSNNDAFYI 1075 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 + + RID ++I +I I +YKT VP+ + +++ QL Y I+K YP Sbjct: 1076 DDTKVFVFKRIDLLAIKSNHIVIVDYKTDVLVPETQLEVQSSYLKQLKSYHDIIKLIYPM 1135 Query: 918 KSLVCLLIYVSEPKVFII 935 ++ ++++ I Sbjct: 1136 HTVNTKILWLENVCFMNI 1153 >gi|304320182|ref|YP_003853825.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503] gi|303299085|gb|ADM08684.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503] Length = 1166 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 227/963 (23%), Positives = 404/963 (41%), Gaps = 49/963 (5%) Query: 1 LKNRFGLSLNESYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59 L + G + + I + L V ++ + + + L Sbjct: 232 LIEQLGEGGDSDVDDIKRHCLQTLDREFVRQFSRIAPDIAKGAKERTFRAREALSAWE-- 289 Query: 60 QCIEERFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 F L S FL + ++I P + + + R R Sbjct: 290 ADDPSAFDHLCSAFLKADGQRPADKTMAGNKDIRGILPSVAAEWAELATALEAARHRITA 349 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + ++ A+ L + K + +LD++DL+ + LL + D + W+++K+ Sbjct: 350 CAIIRTHAATERLLRRTTDFCRAEKARRGLLDYDDLVASAASLLTRTDHA-WLQFKLSHG 408 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 ++H+L+DE QDT QW V+ L + P+T+F VGD KQSIY+F GA+ Sbjct: 409 LHHLLVDETQDTGPSQWSVLNPLRQALLAHNG--EVPKTVFFVGDRKQSIYAFQGADADL 466 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 RE+ + A+ + L SFRS+ IL VVD+ F+ E +GLS+D+ IR Sbjct: 467 FERERAETETLASRDHFVSRQLFL--SFRSSQAILDVVDESFTPEEARRGLSDDA--PIR 522 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 H +++ G V+LW +P W++ D++ E LA+R+A I Sbjct: 523 HVAAKPDLPGKVELWPLERRDETLTEDP----WSAPVDAVRPEHPTRKLAKRLAADIKKR 578 Query: 357 IGTDT-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 +G D I NG KR + +DIL+L + R P+ + R L ++ I G DR L + Sbjct: 579 VGRDDCILKNGDKRPLAYRDILLLCQTR--GPIFHEVLRAL-SEAAIPTAGADRLPLMED 635 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 +A++DL++ RF ++ EDDLS +LKSPL +D +F + R + T++ +++ A Sbjct: 636 IAVRDLLSALRFAVNHEDDLSLAELLKSPLVGIDDDLLFALAHGRDQGVTLWSRVREAAG 695 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG--AKKGRQQFISRFGNEVIDVLDEFL 533 + + I E P + L G +F R G V L+E L Sbjct: 696 S-DDRLAAAVAMIEEAEGTGHASGPFALLSSYLDGGQPSGWLRFHRRLGLGVDLALEELL 754 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 + EQ SL + LE+ IKR + VR+MTVH AKG E+ V+L Sbjct: 755 TDAIAFEQAEPRSLVGFVHYLERSLSDGRIIKRDSEDTEDVVRVMTVHGAKGREAHTVYL 814 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +D + G + P S + ++ + K +EEY R Sbjct: 815 IDANKP---------SELKADFIKGDGGKLICPPSGVSHPLLDLAKEKAKAREREEYRRR 865 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK--DE 708 LYVGMTRA +L+I + TS + S++ +L + + Sbjct: 866 LYVGMTRAEQRLVITGTAGTSKDDPEAVAEAKPPAEASWYGLVAQAMTRLGERVERQSSP 925 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 A + + + IP LF ++ E L PS + + Sbjct: 926 GEAPLRVLSVASSRDRRVQPDKARQSAASAIPNWLFRAADREVEE-RTLAPSHAVDQDQG 984 Query: 769 N------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 +++ RG+++H L + + L +R+ Y + PA+E Sbjct: 985 RSISTIGPLAMVEGQGARRRGILLHGLFERLPPLAPAQRRPLGARYLACHGGDIPAEERA 1044 Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882 L + +LEN S + +E++++G++ + ISG+ID++ + ++ + + Sbjct: 1045 RWLEEVLGILENEAFAEVFSPAAKTEMAIAGRL----GNRRISGQIDRLVLREEEVVFVD 1100 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 +KTH P+ +E + ++Q+++Y +L+ +P + + L++ ++ +P+ L Sbjct: 1101 FKTHRPPPRRVEDVESATLSQMALYHMLLRQRFPGRRVTGALLWTYTAQLMPLPEAVLLS 1160 Query: 943 AFA 945 A Sbjct: 1161 ALE 1163 >gi|85708412|ref|ZP_01039478.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1] gi|85689946|gb|EAQ29949.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1] Length = 818 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 210/833 (25%), Positives = 356/833 (42%), Gaps = 52/833 (6%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + +EEAK + LDF+DLI LL K + S WIRYK+D+ +H+LIDE QDT Sbjct: 1 MGRSFALRWEEAKAREGFLDFDDLIRKAATLLGKSEASDWIRYKLDRSFDHVLIDEAQDT 60 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 + QW+++ +L +DFF G+ RT+F VGD KQ+I+ F G P R K+ + R Sbjct: 61 NSAQWDIVFALIDDFFAGEGARGDRVRTIFTVGDYKQAIFGFQGTSPDNFERAKQKVKAR 120 Query: 248 ATNAG------------QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 +A ++ ++L S+R++ +L V++V G Sbjct: 121 IDDAKANAGELRENRRLPTWNDLDLGRSYRTSLPVLDFVNRVIETL----GYGAFGLNKA 176 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + G V LW+ V+ D W D + LA +IA + Sbjct: 177 PADHVGADRPGLVALWDPVMGAADDPDEEDDRDWLPAHD--------TRLAEKIAEQVRR 228 Query: 356 MIGTDTI--FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + + GK+R A DI+VLVR+RKD + + ++V G DR L Sbjct: 229 WVSEEEPFVLEKGKRRHASAGDIMVLVRRRKD---LAAQIVAKLHAKGVAVAGVDRLRLG 285 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473 L +KDLMA RF DDLS +L SPL +++DD+ + R + ++++++K Sbjct: 286 APLVVKDLMAALRFAAQPLDDLSLANLLASPLIGWTQDDLLE-YVPRDPGKRLWDHLRKH 344 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEF 532 + + I + EL+ A F +P +L G + R+ +R G E D +DE Sbjct: 345 E---APRVEETITKLRELLARADFETPQTLLAWLLTGPWQARRALAARLGREANDPIDEL 401 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 LN E SL I + +KR +VR+MTVH +KGL++P+V L D Sbjct: 402 LNAAFAFEAAHTPSLAGFIEWFDAGEGELKRDADEATGQVRVMTVHGSKGLQAPIVILAD 461 Query: 593 TGSQVFSHKHIK--KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + ++ I + + +P+ R V + + +E+ RL Sbjct: 462 ATGEPGQGGALELADDPIGNAGDGARKVPLPSLSKDERVGPVRLAEEKASVAQMQEHWRL 521 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV MTRA + L I KK + + + ++ + + I Sbjct: 522 LYVAMTRAEEALFIGGSLGPRQAKKGEP----------HEDSWYARLAPVFDAPPQQDSI 571 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-KTN 769 E PL +T + +P PI + P L PS+ Sbjct: 572 WGERREWGVRADPLVGSDTPAATTGTEPLPMWATKPIGPEPRPPKPLAPSSAAEDQSADP 631 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 + RG ++H+LL+ + L +R+ S+ + A K + +L S Sbjct: 632 PLAPEIAAIAARRGTLMHRLLERLPDLAVAEREAAARSWLARQAGDLDEKTREEILSSSL 691 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 +L P S D+ +EV + I+++G D++ ++++ + + ++KT Sbjct: 692 AVLVEPGFAELFSADALAEVP----LAAQVDGIVVAGTADRLHVTEEVVTVVDFKTTRRP 747 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 P+ ++ IP + Q++ Y L+ YP + + ++Y K+ IP+ L Sbjct: 748 PESLDDIPRATLRQMAAYASALEAIYPGREVRAAVLYTQNTKLIEIPKVTLAD 800 >gi|256005816|ref|ZP_05430767.1| recombination helicase AddA [Clostridium thermocellum DSM 2360] gi|255990217|gb|EEU00348.1| recombination helicase AddA [Clostridium thermocellum DSM 2360] gi|316941647|gb|ADU75681.1| recombination helicase AddA [Clostridium thermocellum DSM 1313] Length = 1251 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 165/1009 (16%), Positives = 339/1009 (33%), Gaps = 147/1009 (14%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSF----FLT-----QKFTPQKNIITQEINKKSPD 95 L L + + + + ++ F T ++ K I ++I D Sbjct: 255 EDLANVDALLKLLNEESEMQWDRIFNALQGFEFATLPRCGREVDKDKQEIVKKIRD---D 311 Query: 96 LKEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 +K++++K +++ I + + L K L Y E K + V+DF DL Sbjct: 312 VKQRIRKFREKVITSVSNEIISDLKALYPKMKCLANLVKQLAEKYAEKKNRKSVVDFNDL 371 Query: 153 IINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 ++L + + + + IL+DE QD++L+Q +I +++ Sbjct: 372 EHFCLEILTERKEDGSIIPSRTAISYRERFAEILVDEYQDSNLVQETIINMISKGDDASP 431 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 +F VGD KQSIY F A P+ L + + G I L +FRS Sbjct: 432 G-------VFMVGDVKQSIYRFRQARPELFLEKYNTY---LPDKGSPCRKIILSRNFRSR 481 Query: 268 ADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWEQVVSQH 318 +++ V+ +F A L + + G V+ Sbjct: 482 REVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKEDITVGGEVEFHLIQTEDE 541 Query: 319 DSQCNPQQESWTSYFDSLPQESSA-----SILARRIAYTISNMIG--------TDTIFSN 365 D + E +E AR + I ++ + + Sbjct: 542 DKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILELMKPDENGRYFSVFDKAK 601 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + R ++ +D+++L+R T + + I V + + ++ +++L Sbjct: 602 NEYRRVEYRDVVILLRT---TRNWAEVFVDELSVMGIPVFADTGTGFFKTVEVQVMLSLL 658 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----CGISKF 481 + I + D+ + +L+SP+ F+ D++ ++ + +++ ++K A K Sbjct: 659 QIIDNPLQDIPLLSVLRSPIVGFTTDELAEL-RLVDKKALLFDALKKLAESGQGEAAGKA 717 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540 ++ + + ++ + S + G + L + E Sbjct: 718 SAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSIVGAMPAGEQRQANLRILYERARQFE 777 Query: 541 QNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + SY L I+ ++ + + S N N VRIM++H +KGLE PVV + G Sbjct: 778 ETSYKGLFNFINFIDKLKSSRGDMGSAKILSENDNVVRIMSIHKSKGLEFPVVIVAGCGK 837 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + K + + L P + + + + + +K T E R+LYV + Sbjct: 838 KFNLQDMNKSILLHHELGFGPDVVDHKLRLSWPSVAKQAIREKIKAETLSEEMRILYVAL 897 Query: 656 TRASDQLIICKHSNTSNEKKSNQ----------RTWYDMVYDSFHNDERVKK-------- 697 TRA ++L+I + + + YDM+ + + D Sbjct: 898 TRAREKLVITGAVKNARKAVEKWLDSASVQESRLSAYDMLSGANYLDWIGPALLRHKNCG 957 Query: 698 ---------------IKLTNSINKDEWIAYEWSTHHPENTPLERE----------ETIKQ 732 I + + W + + E E E + Sbjct: 958 GLRDCVGSAGFRGLLIDDPSVWSVKIWNKTDVQSSGVSEEQGESEFIKWLDSLEKEEPSE 1017 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------------------GKTNLES 772 +E P P ++ + + + K Sbjct: 1018 YAEETARRLSWSYPYVKASKVPAKVSVTELKRRYNEMVSEDVMQFPDYMPVLVKKPMFLE 1077 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRL 831 +G I+H ++Q + + I KN L ++ +++ I R Sbjct: 1078 EKKGLTYAEKGTILHFVMQHL-DYGREDIEAQIEEMVAKN--LLTPQQAQSVDAARIRRF 1134 Query: 832 LENPMMTTAMSCDSY-SEVSVSGKIN------------CPKKDIIISGRIDQISISQQNI 878 L +P+ ++ S EV + +I C + +++ G +D I Sbjct: 1135 LNSPLGKRMLASKSINREVPFNIEIPCHELYRDMEDEACHGETLLLQGVVDCYFEEPDGI 1194 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + +YKT + P +E I + Q+ Y + L+ K + IY+ Sbjct: 1195 VLVDYKTDYVAPGNVETIRERYKVQILYYARALE-MLTGKKVKEKYIYL 1242 >gi|125974531|ref|YP_001038441.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium thermocellum ATCC 27405] gi|251764521|sp|A3DH19|ADDA_CLOTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|125714756|gb|ABN53248.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium thermocellum ATCC 27405] Length = 1251 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 165/1009 (16%), Positives = 335/1009 (33%), Gaps = 147/1009 (14%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSF----FLT-----QKFTPQKNIITQEINKKSPD 95 L L + + + + ++ F T ++ K I ++I D Sbjct: 255 EDLANVDALLKLLNEESEMQWDRIFNALQGFEFATLPRCGREVDKDKQEIVKKIRD---D 311 Query: 96 LKEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 +K++++K +++ I + + L K L Y E K + V+DF DL Sbjct: 312 VKQRIRKFREKVITSVSNEIISDLKALYPKMKCLANLVKQLAEKYAEKKNRKSVVDFNDL 371 Query: 153 IINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 ++L + + + + IL+DE QD++L+Q +I +++ Sbjct: 372 EHFCLEILTERKEDGSIIPSRTAISYRERFAEILVDEYQDSNLVQETIINMISKGDDASP 431 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 +F VGD KQSIY F A P+ L + + G I L +FRS Sbjct: 432 G-------VFMVGDVKQSIYRFRQARPELFLEKYNTY---LPDKGSPCRKIILSRNFRSR 481 Query: 268 ADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWEQVVSQH 318 +++ V+ +F A L + + G V+ Sbjct: 482 REVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKEDITVGGEVEFHLIQTEDE 541 Query: 319 DSQCNPQQESWTSYFDSLPQESSA-----SILARRIAYTISNMIG--------TDTIFSN 365 D + E +E AR + I ++ + + Sbjct: 542 DKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILELMKPDENGRYFSVFDKAK 601 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + R ++ +D+++L+R T + + I V + + ++ +++L Sbjct: 602 NEYRRVEYRDVVILLRT---TRNWAEVFVDELSVMGIPVFADTGTGFFKTVEVQVMLSLL 658 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----CGISKF 481 + I + D+ + +L+SP+ F+ D++ ++ + +++ ++K A K Sbjct: 659 QIIDNPLQDIPLLSVLRSPIVGFTTDELAEL-RLVDKKALLFDALKKLAESGQGEAAGKA 717 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540 ++ + + ++ + S + G + L + E Sbjct: 718 SAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSIVGAMPAGEQRQANLRILYERARQFE 777 Query: 541 QNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + SY L I+ ++ + + S N N VRIM++H +KGLE PVV + G Sbjct: 778 ETSYKGLFNFINFIDKLKSSRGDMGSAKILSENDNVVRIMSIHKSKGLEFPVVIVAGCGK 837 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + K + + L P + + + + + +K T E R+LYV + Sbjct: 838 KFNLQDMNKSILLHHELGFGPDVVDHKLRLSWPSVAKQAIREKIKAETLSEEMRILYVAL 897 Query: 656 TRASDQLIICKHSNTSNEKKSNQ----------RTWYDMVYDSFHNDERVKKI------- 698 TRA ++L+I + + YDM+ + + D + Sbjct: 898 TRAREKLVITGAVKNVRKAVEKWLDSASVQKSRLSAYDMLSGANYLDWIGPALLRHKNCG 957 Query: 699 ----------------------------------KLTNSINKDEWIAYEWSTHHPENTPL 724 + + + E Sbjct: 958 GLRDCVGSAGFRGLLIDDPSVWSVKIWNKTDVQSSGVSEEQGESEFIKWLDSLEKEEPSE 1017 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK------------GKTNLES 772 EET ++L K P K + E + K Sbjct: 1018 YAEETARRLSWSYPYVKASKVPAKVSVTELKRRYNEVVSEDVMQFPDYMPVLVKKPMFLE 1077 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRL 831 +G I+H ++Q + + I K L ++ +++ I R Sbjct: 1078 EKKGLTYAEKGTILHFVMQHL-DYGREDIEAQIEEMVAK--DLLTPQQAQSVDAARIRRF 1134 Query: 832 LENPMMTTAMSCDSY-SEVSVSGKIN------------CPKKDIIISGRIDQISISQQNI 878 L +P+ ++ S EV + +I C + +++ G +D I Sbjct: 1135 LNSPLGKRMLASKSINREVPFNIEIPCHELYRDMEDEACHGETLLLQGVVDCYFEEPDGI 1194 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + +YKT + P +E I + Q+ Y + L+ K + IY+ Sbjct: 1195 VLVDYKTDYVAPGNVETIRERYKVQILYYARALE-MLTGKKVKEKYIYL 1242 >gi|281419055|ref|ZP_06250072.1| recombination helicase AddA [Clostridium thermocellum JW20] gi|281407204|gb|EFB37465.1| recombination helicase AddA [Clostridium thermocellum JW20] Length = 1251 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 165/1009 (16%), Positives = 336/1009 (33%), Gaps = 147/1009 (14%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSF----FLT-----QKFTPQKNIITQEINKKSPD 95 L L + + + + ++ F T ++ K I ++I D Sbjct: 255 EDLANVDALLKLLNEESEMQWDRIFNALQGFEFATLPRCGREVDKDKQEIVKKIRD---D 311 Query: 96 LKEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 +K++++K +++ I + + L K L Y E K + V+DF DL Sbjct: 312 VKQRIRKFREKVITSVSNEIISDLKALYPKMKCLANLVKQLAEKYAEKKNRKSVVDFNDL 371 Query: 153 IINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 ++L + + + + IL+DE QD++L+Q +I +++ Sbjct: 372 EHFCLEILTERKEDGSIIPSRTAISYRERFAEILVDEYQDSNLVQETIINMISKGDDASP 431 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 +F VGD KQSIY F A P+ L + + G I L +FRS Sbjct: 432 G-------VFMVGDVKQSIYRFRQARPELFLEKYNTY---LPDKGSPCRKIILSRNFRSR 481 Query: 268 ADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWEQVVSQH 318 +++ V+ +F A L + + G V+ Sbjct: 482 REVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKEDITVGGEVEFHLIQTEDE 541 Query: 319 DSQCNPQQESWTSYFDSLPQESSA-----SILARRIAYTISNMIG--------TDTIFSN 365 D + E +E AR + I ++ + + Sbjct: 542 DKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILELMKPDENGRYFSVFDKAK 601 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + R ++ +D+++L+R T + + I V + + ++ +++L Sbjct: 602 NEYRRVEYRDVVILLRT---TRNWAEVFVDELSVMGIPVFADTGTGFFKTVEVQVMLSLL 658 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----CGISKF 481 + I + D+ + +L+SP+ F+ D++ ++ + +++ ++K A K Sbjct: 659 QIIDNPLQDIPLLSVLRSPIVGFTTDELAEL-RLVDKKALLFDALKKLAESGQGEAAGKA 717 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540 ++ + + ++ + S + G + L + E Sbjct: 718 SAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSIVGAMPAGEQRQANLRILYERARQFE 777 Query: 541 QNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + SY L I+ ++ + + S N N VRIM++H +KGLE PVV + G Sbjct: 778 ETSYKGLFNFINFIDKLKSSRGDMGSAKILSENDNVVRIMSIHKSKGLEFPVVIVAGCGK 837 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + K + + L P + + + + + +K T E R+LYV + Sbjct: 838 KFNLQDMNKSILLHHELGFGPDVVDHKLRLSWPSVAKQAIREKIKAETLSEEMRILYVAL 897 Query: 656 TRASDQLIICKHSNTSNEKKSNQ----------RTWYDMVYDSFHNDERVKKI------- 698 TRA ++L+I + + + YDM+ + + D + Sbjct: 898 TRAREKLVITGAVKNARKAVEKWLDSASVQESRLSAYDMLSGANYLDWIGPALLRHKNCG 957 Query: 699 ----------------------------------KLTNSINKDEWIAYEWSTHHPENTPL 724 + + + E Sbjct: 958 GLRDCVGSAGFRGLLIDDPSVWSVKIWNKTDVQSSGVSEEQGESEFIKWLDSLEKEEPSE 1017 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK------------GKTNLES 772 EET ++L K P K + E + K Sbjct: 1018 YAEETARRLSWSYPYVKASKVPAKVSVTELKRRYNEVVSEDVMQFPDYMPVLVKKPMFLE 1077 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRL 831 +G I+H ++Q + + I K L ++ +++ I R Sbjct: 1078 EKKGLTYAEKGTILHFVMQHL-DYGREDIEAQIEEMVAK--DLLTPQQAQSVDAARIRRF 1134 Query: 832 LENPMMTTAMSCDSY-SEVSVSGKIN------------CPKKDIIISGRIDQISISQQNI 878 L +P+ ++ S EV + +I C + +++ G +D I Sbjct: 1135 LNSPLGKRMLASKSINREVPFNIEIPCHELYRDMEDEACHGETLLLQGVVDCYFEEPDGI 1194 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + +YKT + P +E I + Q+ Y + L+ K + IY+ Sbjct: 1195 VLVDYKTDYVAPGNVETIRERYKVQILYYARALE-MLTGKKVKEKYIYL 1242 >gi|220935292|ref|YP_002514191.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7] gi|219996602|gb|ACL73204.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7] Length = 1147 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 189/955 (19%), Positives = 345/955 (36%), Gaps = 59/955 (6%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 + + ++ + T Q L A Sbjct: 227 ALAVDPDADPRG------DCLDPATRADLTDLAALLARNTSTDKPLGQALADALAIGDTG 280 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEKLKKSQ----DEFIKIRDRFNTY 117 F + LTQK TP+ + K+ +++L + ++ D Sbjct: 281 VLFEAARAALLTQKNTPRVRKQSAAQAKRLGGEAAEDRLLALHGTLCERWLAALDGLARQ 340 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 + A + HY+ K++ LDF DL LL D + W++Y++D I Sbjct: 341 HSLRLNGAWFSAGLRYLEHYQALKEELRTLDFTDLEWRAYQLLNHGDHALWVQYRLDSRI 400 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 H+LIDE QDT+ QW +I L E+ R++F VGD KQSIYSF A+P+ Sbjct: 401 EHLLIDEFQDTNPTQWRLILPLLEELAAHGERQG--RSVFLVGDTKQSIYSFRRADPRLQ 458 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 R ++R + L S+RS+ ++ V++VF+ L H Sbjct: 459 EIAARWIEERLNGRPE-----TLDWSWRSSPAVMDFVNRVFTACPA---LRAALPGFHPH 510 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCN-PQQESWTSYFDSLPQESSASILAR---RIAYTI 353 + G V++W + + +++ + P + + + S+ AR RIA I Sbjct: 511 DTHLKDLWGRVEVWPLIQADQETEEDTPASQGLRDPLTTPRPDPGESLHAREGARIAARI 570 Query: 354 SNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 M+ + G R + DI +LVR R I R D I + R L Sbjct: 571 REMVDGGQVVGRGASARPMHFGDITILVRNRTHVGAIEDALR----DAGIPYLSAARGEL 626 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 DHL ++DL AL R +++ DDL+ +L+SPLF+ + ++ ++ Sbjct: 627 LDHLEVRDLEALLRVLITPHDDLALAQVLRSPLFDVTHRELERLADAGPGPWHERLERLA 686 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----IDV 528 S + + + HD I ++ + + + Sbjct: 687 PDLPPGSALKRAADKLTRWRAWSGALPVHDLLDRIFLDGNVLARYQAGSRADRVPTVMAS 746 Query: 529 LDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 L FL L + Y SL ++ L VRIMT+H +KGL Sbjct: 747 LIRFLELALEVDSGRYPSLVHFLARLRGLRDRSDAAPDTPPVRGAEQRVRIMTIHASKGL 806 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E+PV+FL D + HK + + P+ P + +P+S +++ + H + + Sbjct: 807 EAPVIFLADAAAVPRDHKTYEPLVQWPAGEPRPRLMQLLPRSDDVDSLTRQALAHHQTAR 866 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 + E LLYV +TRA LI+ + + WY + ++ + +++ Sbjct: 867 EREEANLLYVALTRARQVLIVSASARGKGDGG-----WYARIREAIAPEAVSEELDTGVP 921 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 E ++ P + T + + ++L P Sbjct: 922 GRFAEDGSWVHEAGTPPVAAEQAVATPPAAQVPEGLNRRLECAAPEREIAPSR------A 975 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 G E D RG+ IH+LL+ + I + + Sbjct: 976 AAGYAEGEREDGDEDARLRGVGIHRLLEWLAGGMRDSDAALIRRLAAELGLDPGHPDLGE 1035 Query: 824 LLLSITRLLENPMMTTAMSCD----SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 L +L P + + Y EV + + G ID++ + ++ I Sbjct: 1036 WLGEARAVLAEPGLAAVFAPAPDCVDYCEVPLQYTAA---DGRTVYGIIDRLRVGRERIL 1092 Query: 880 IFEYKTHHHVPQEIE-HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + +YKTH + + + A +++Y + ++ +P +++ L++ + Sbjct: 1093 LVDYKTHRVADEAAARQVAEVYAAPMALYAEGVRRLWPGRTVEARLLFTHLRALV 1147 >gi|220929196|ref|YP_002506105.1| recombination helicase AddA [Clostridium cellulolyticum H10] gi|251764516|sp|B8I2Y2|ADDA_CLOCE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219999524|gb|ACL76125.1| recombination helicase AddA [Clostridium cellulolyticum H10] Length = 1248 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 154/973 (15%), Positives = 319/973 (32%), Gaps = 131/973 (13%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 + ++I + + L+ + M+ L Sbjct: 294 KDAEKSVQESVKKIRDELKSVINGLRDEVFFMESDEIASDLKTMYPILKCVSRLVMDFGR 353 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSL 190 Y K + +DF DL ++L + D I + IL+DE QD++L Sbjct: 354 RYAHKKSQRASVDFNDLEHFCLNILAETDKDGNIRPTKIAQNYKDKFTEILVDEYQDSNL 413 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q +I +++ +F VGD KQSIY F A+P+ L + Sbjct: 414 VQEIIINMISKKDI-------GSPNVFMVGDVKQSIYRFRQAKPELFLEKYNNYSID--- 463 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV----- 305 + I L +FRS D++ ++ +F + + D Sbjct: 464 EDSSYRKILLFKNFRSRKDVVDGINYIFKQIMSQKVGELDYNEIEELNPGAGFSPCQNEE 523 Query: 306 ----GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIG 358 G ++L S D+ + D ++ + AR +A I + Sbjct: 524 TVVGGAIELHLIETSVGDNTVLSEGSEPMDEQDFPEEDEILDNIQKEARMVANRIIELFQ 583 Query: 359 TDTIFSN--------GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 D G+ R ++ DI++L+R T T + + I V + Sbjct: 584 ADKDGKKYAVYDKKLGEYRNVRFSDIVILLRT---TRNWTEVFSAELANADIPVFADTGS 640 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 ++ +++L + I + D+ + +L+SP+ NFS D+ + +++E + Sbjct: 641 GFFKTPEVQVVLSLLQIIDNPYQDIPLLAVLRSPIVNFSTADLTDVRLMN-RNASIFEAL 699 Query: 471 QK---FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526 ++ K ++ + + ++ + S H+ + + G Sbjct: 700 KETAVHDTQVSKKASDFLQKLEKWRDMSLYMSTHELIWQLYNETGYFSIVGAMQDGERKQ 759 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L L+ E SYS L IS +++ + N N VR+M++H +K Sbjct: 760 ANLKILFERALQYENTSYSGLFNFISFIDKLKTNKGDMGSAKVLGENDNVVRLMSIHKSK 819 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVFL G + K + + L P + + K + + + ++ Sbjct: 820 GLEFPVVFLCGCGKKFNMQDMYKSILLHQELGFGPDFVDYKKRIKYPSIPKQAIAQKIRI 879 Query: 642 STQEEYNRLLYVGMTRASDQLIICK-----------HSNTSNEKKSNQRTWYDMVYDSFH 690 T E R+LYV MTRA ++LII T+ + + ++ Sbjct: 880 ETLSEEMRILYVAMTRAREKLIITGSVNNIEKSALKWLGTAQSNDNKFPPHNMLKAQNYL 939 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHP--------------ENTPLEREETIKQLMDE 736 + ++ +S+ P ++ + D Sbjct: 940 DWICPSVMRHKDSVILRNAAGLGVDYSGPTISDDSSWTIILADQSDIAVAKRFETDTQDR 999 Query: 737 QKIPKK--------------------LFSPIKNDINEPYILNPSTID------------- 763 + I K ++ P ++ + + Sbjct: 1000 EDITKWLQEKGSADSGDSHEIHRRLDWKYTYRDFAQIPSKISVTELKRYFHLNNDEDNSQ 1059 Query: 764 ------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 T K +G +H ++Q + E +L Sbjct: 1060 LQYKTATIKKPAFLEGKKGLSPAEKGTAMHFVMQHLDFHNEDIAGQVK---IMVKKELLT 1116 Query: 818 AKEYKNL-LLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCP------------KKDII 863 + K++ ++ I+ + + + + Y EV + ++ + I+ Sbjct: 1117 EIQAKSIDIMKISAFINSVIGKRMLKSVKVYREVPFNIELPYKEIYPQLPDVSDYEDKIL 1176 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923 + G +D + +I + +YKT + + + + + Q+S Y + L+ K + Sbjct: 1177 LQGVVDCYFEEEDHIVLIDYKTDYIPYGDKQSVKEKYRLQISYYSRALE-MLTLKRVKER 1235 Query: 924 LIYV-SEPKVFII 935 IY+ S ++ + Sbjct: 1236 YIYLFSTGEIVEM 1248 >gi|296188218|ref|ZP_06856610.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7] gi|296047344|gb|EFG86786.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7] Length = 1243 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 159/988 (16%), Positives = 315/988 (31%), Gaps = 138/988 (13%) Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 +F L K + + + E + + + +M+ Sbjct: 277 QFEKLPVKRNKDADKEAKEKSKKIRDDVKKKITEISEDIFLKMSSMGKDLK--EMYPKMK 334 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINH 179 + + N Y K++ ++DF D+ ++L + I + Q+ Sbjct: 335 SLGKIVMEFNERYGAKKRERGLVDFNDIEHFCLNILIDTKENGDITPSKIALEYRQKFEE 394 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 ILIDE QD++ +Q ++ ++ + + F VGD KQSIY F A+P+ L Sbjct: 395 ILIDEYQDSNEVQEVIMNAI--------SKKNDIPNTFMVGDVKQSIYRFRQAKPELFLD 446 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRH 297 + N I+L +FRS +I+ V+ VF+ N L D ++ Sbjct: 447 KYNRYSD---NRVGNERKIKLFKNFRSRPEIIFAVNYVFNQIMSVNIGELEYDEGEMLKS 503 Query: 298 RSSRIGQVGTV-------QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILARR 348 + V +L ++ + Q + +++ +E+ I AR Sbjct: 504 GADFPELGENVMDAESKIELHLLDKKDNEVCEDNSQNPEGAEAENINEETPDNIQIEARL 563 Query: 349 IAYTISNMIGTD----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 + I ++I + K R + KDI++L+R + + I V Sbjct: 564 VGKRIIDLINNEKFKVYDKDEKKYRNVTYKDIVILLRTTSNWA---PTFVEELKSFGIPV 620 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--- 461 + D++ I+ +++L + I + D+ + +L+SP+ FS ++I I Sbjct: 621 FADTNTGYFDNIEIRTIISLLQIIDNPIQDIPLLSILRSPIEGFSSEEIIDIRMVDRNIN 680 Query: 462 ---------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 E++ E I+ + K + + + + + + +F I Sbjct: 681 FFSALKIIIESDDADERIKHVSKELKDKVSNFLNKLKKWRKKSLYMPIDEFIWYIYTDTG 740 Query: 513 GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHS 566 G + L + E SY L I+ + + Sbjct: 741 YYGFVGAMPGGKQRQANLRILFQRAKQYESTSYKGLFNFINFINKLRNSSGDMGSAKILG 800 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 N + VRIM+VH +KGLE PVV L TG + + L P + Sbjct: 801 ENEDVVRIMSVHKSKGLEFPVVILSGTGKNFNLMDMNRSVLFHSELGLGPEYVNIDRRIS 860 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------- 678 L K +K T E R+LYV +TRA ++LII + + Sbjct: 861 YPTIAKQVLKKKIKVETLSEEMRILYVALTRAKEKLIITGTAKDLEKTSEKWCEAIKYEE 920 Query: 679 -------------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + D +K +W W + Sbjct: 921 GKIPEYVVINAKNYLDWIVPAVAKHLSGKVIRDIGGVYDFEPLVDDKSKWCVKLWRKENF 980 Query: 720 ENTPLEREETIKQLM---------------DEQKIPKKLFSPIKNDINEPYILNPSTI-- 762 +N + E + +E K N P + S I Sbjct: 981 KNDLRDENEKEDIIKIVKDESLNGGNSIYYEEVNRRLNWQYKYKESCNIPSKFSVSEIKR 1040 Query: 763 -----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---LPEHKRK 802 K + +G ++H ++Q + + Sbjct: 1041 RFDFLSADEGSSFLVDSSKLNKPVFLQKTTKLSASEKGTLLHTVMQHVDLKKVSNYEEIS 1100 Query: 803 NFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN---- 856 N + + +E ++ I + + + + S EV ++ Sbjct: 1101 NQVNDLVNRE--FITREEANSIDANKILKFFNSSLGKRMIKSKKVLREVPFIVSLDSTEL 1158 Query: 857 --------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 ++ +++ G ID + + +YKT + +++ I + Q+ Y+ Sbjct: 1159 YKDLPRDVYGEEKVLLQGIIDCYFEEDDELVLLDYKTDYV--DDLDKIKERYSVQIKCYK 1216 Query: 909 KILKDSYPNKSLV-CLLIYVSEPKVFII 935 L+ K++ L ++ + Sbjct: 1217 NALERL-TGKNIKNKYLYLFYNDEILEL 1243 >gi|326202081|ref|ZP_08191951.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium papyrosolvens DSM 2782] gi|325987876|gb|EGD48702.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium papyrosolvens DSM 2782] Length = 1247 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 159/995 (15%), Positives = 320/995 (32%), Gaps = 132/995 (13%) Query: 54 QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 + F + + ++ + + L+ Sbjct: 272 AHWDRLYDYINSFEFQTLPRCGKDAEKTVQESVKKTRDELKSVITGLRNEVFMKSDEIAS 331 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAW 168 M+ L Y + K + +DF DL ++L + D Sbjct: 332 DLKA-MYPVLKCVSKLVVDFGRRYSQKKSQRASVDFNDLEHFCLNILAETDEDGKIRPTK 390 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 I + IL+DE QD++L+Q +I ++++ +F VGD KQSIY Sbjct: 391 IAQHYKDKFTEILVDEYQDSNLVQEIIINMISKE-------DRGSPNVFMVGDVKQSIYR 443 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F A+P+ L + G + I L +FRS +++ ++ +F + + Sbjct: 444 FRQAKPELFLEKYDNYSID---EGSSYRKILLFKNFRSRKEVVDGINYIFKQIMSQKVGE 500 Query: 289 EDSTTTIRHRSS---------RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 D + G ++L S D+ + DS +E Sbjct: 501 LDYNEIEELNPGAGFPPCQNEKTVAGGAIELHLIETSAADNSAQSEVNEEMEEDDSSEEE 560 Query: 340 ---SSASILARRIAYTISNMIGTDTIFSN--------GKKRVIQAKDILVLVRKRKDTPL 388 + AR +A I + D+ G R ++ DI++L+R T Sbjct: 561 EILDNIQKEARMVANRIIELFKPDSDGKKFVIYDKKLGDYREVRFNDIVILLRT---TRN 617 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 T + I V + ++ +++L + I + D+ + +L+SP+ NF Sbjct: 618 WTEVFSEELAKSDIPVFADTGSGFFKTPEVQVVLSLLQIIDNPYQDIPLLSVLRSPIVNF 677 Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFT 505 S D+ ++ +++E I++ + K ++ + + ++ + S H Sbjct: 678 STGDLAEVRLMN-RNASIFEAIKEISGQDKEVSKKSSAFLEKLSKWREMSLYMSTHKLIW 736 Query: 506 LILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPP 559 + + G L L+ E SY+ L IS +++ Sbjct: 737 QLYDETGYFSIVGAMQDGERKQANLKILFERALQFENTSYNGLFNFISFIDKLKTNKGDM 796 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + N N VR+M++H +KGLE PVVFL G + K + + L P Sbjct: 797 GSAKVLGENDNVVRLMSIHKSKGLEFPVVFLCGCGKKFNMQDMYKSVLLHQELGFGPDFV 856 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ- 678 + + K + + + ++ T E R+LYV MTRA ++LII N + + Sbjct: 857 DYKRRIKYPSIPKQAISQKIRVETLSEEMRILYVAMTRAREKLIITGSVNNAEKSALKWL 916 Query: 679 ------------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 + + D + S + + ++ + D + Sbjct: 917 GTAQSNGNKFPSHNMLKAQNYLDWICPSIMRHKDSEALRKAAGLGVDYSGPVISDESFWK 976 Query: 721 NTPLEREETIK--------------------------QLMDEQKIPKKLFSPIKNDINEP 754 + + E P + P Sbjct: 977 IILTNQSGIAVTKKMETDIKGREDILNWLHQKENCDNEAAIEIHRRLGWKYPYREFAQIP 1036 Query: 755 YILNPSTID-------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 L+ + + T K +G +H +Q + Sbjct: 1037 SKLSVTELKRYFNLNNDEDNSQPEFKTTTIKKPAFLEKKKGLSPAEKGTAMHFAMQHMDF 1096 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC-DSYSEVSVSG 853 + +L + K++ + I + + + + + EV + Sbjct: 1097 RNQDIEGQIE---LMVKKELLTEVQAKSIDIRKIRSFINSAVGKRMLDSCKIHREVPFNI 1153 Query: 854 KINCP------------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901 ++ + I++ G ID + NI + +YKT + +IE + + Sbjct: 1154 ELPYKEIYPQLPDASDYEDKILLQGVIDCYFEEEDNIVLIDYKTDYVPDGDIEVMKEKYK 1213 Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYV-SEPKVFII 935 Q+S Y + L+ K + IY+ S + + Sbjct: 1214 LQISYYSRALE-MLTLKRVKERYIYLFSTGDILEM 1247 >gi|218896177|ref|YP_002444588.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842] gi|251764501|sp|B7IL84|ADDA_BACC2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218544151|gb|ACK96545.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842] Length = 1241 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADVALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + ++ Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVAFQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFTEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 514 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++D+ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTNWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSYRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + ++ I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 QHPVKEKCLYFFDGNHVVNIEE 1241 >gi|228899819|ref|ZP_04064065.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL 4222] gi|228859838|gb|EEN04252.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL 4222] Length = 1166 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADVALLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + ++ Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVAFQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFTEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++D+ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTNWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSYRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + ++ I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|326938868|gb|AEA14764.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar chinensis CT-43] Length = 1241 Score = 410 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 162/1043 (15%), Positives = 333/1043 (31%), Gaps = 147/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66 + +D+ I K L+M P + +TLQ ++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAP--RIETLQADVVLLGTLSSAARESWTSLY 282 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119 + + +K+ +++ K+ L+ K K + + M Sbjct: 283 EAMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDM 342 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 343 HPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYR 402 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 403 NKFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEP 455 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 456 GLFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDAD 512 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 ++ +S + + + ++ + A + AR +A Sbjct: 513 AELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQR 563 Query: 353 ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I M+ + + K R +Q +D ++L+R I V + Sbjct: 564 IKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLA 619 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465 + + +M + R I + D+ +L+SP+ +++D+ + + Sbjct: 620 TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVM 679 Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521 + + K + + A+ S D + G Sbjct: 680 SSFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPA 739 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576 G + L + + E S+ L + +E+ RA + VRIMT Sbjct: 740 GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMT 799 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE PVVF+ G + + +K+ + + K + Sbjct: 800 IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 859 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677 + +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 860 RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAG 919 Query: 678 QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706 + D + S + + + K Sbjct: 920 ASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEK 979 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 E + +EE +L+ + K + E S + Sbjct: 980 QELLEALREKKAVPLQSERKEEVYDRLLWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDN 1039 Query: 767 K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814 RG +H ++Q + + N + Sbjct: 1040 AFIKKLRVPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITAETLQEQIAGMVNKE 1099 Query: 815 LWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 L ++ + + + + ++ + ++ S EV + + ++ I Sbjct: 1100 LLTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETI 1159 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL 1219 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 -QHPVKEKCLYFFDGNHVVNIEE 1241 >gi|297543796|ref|YP_003676098.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841571|gb|ADH60087.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1230 Score = 410 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 153/1005 (15%), Positives = 344/1005 (34%), Gaps = 136/1005 (13%) Query: 35 VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT------QKFTPQKNIITQE 88 + +++ +A L++ + EE +++ + P+ + Sbjct: 241 AEIGLQSYLDNFEIEAGNLEKLLDCENWEEFRKQINAIKFDRLPRAGKDADPKVKEEVTK 300 Query: 89 INKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 I + ++++ D+ KI + + A + L + Y + K++ + Sbjct: 301 IRNEVKAKIKEIRNKFFSDDIEKIEEEIKVL--YPIMKALVDLILLFDKKYADKKREKGI 358 Query: 147 LDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +DF D+ +L + D + + ++ I +DE QD++LIQ ++ ++ Sbjct: 359 IDFNDIEHFALKILTEVDEKGKMKPSEVALMYREKFQEIFVDEYQDSNLIQEVILSTIAR 418 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + F VGD KQSIY F A P + + + I L Sbjct: 419 EDT---------PNRFMVGDVKQSIYRFRQANPYIFFEKYNTYSSKEEDKN---KKILLY 466 Query: 262 LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLWEQ 313 +FRS + I+ V+ +F N + + + + G V++ Sbjct: 467 KNFRSRSQIIDAVNFIFKKIMSKNVGEIDYTDEEKLNYGADFGTPPLGAIVGGPVEIHLI 526 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-------FSNG 366 + + + ++E + + AR ++ I ++ + Sbjct: 527 ---EKNDEIPEEEEVEVYEEEEEEVIDNIQGEARVVSQRIKELVNQSERGIFMVYDKNLK 583 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 R ++ +DI++L+R T + + I + + IK +++L + Sbjct: 584 NYRPVEYRDIVILLRA---TERWAPVFLEELINAGIPAFADTGTGYFETTEIKTIISLLQ 640 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQH 483 I + D+ + +L+SP+F+F+ +++ I +T+YE ++K A K Sbjct: 641 VIDNPMQDIPLLAVLRSPIFSFTPEELIDI-RLEEPNKTIYEALKKAAQRQDELGQKIVF 699 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQN 542 +K + + A + +F + G + L + E+ Sbjct: 700 FLKSLKKWQEKAIYMPVDEFLWYLYQDTGYYAYVGAMPQGVQRQANLRILFERAKQYEET 759 Query: 543 SYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 S+ L I+ + + N N VRIM++H +KGLE PVV + G Q Sbjct: 760 SFKGLFNFINFVTRLKVSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQF 819 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + L P + + + + + +K + E R+LYV +TR Sbjct: 820 NLKDLSQSVLYHHLLGLGPEFVDFKRRISYPSIVKEAIKNKIKLESLSEEMRVLYVALTR 879 Query: 658 ASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIK 699 A ++LI+ EK +++ D + + +K ++ Sbjct: 880 AKEKLILVGSVKDIKEKVKKWCNIAMLGNKVPEYEVLKGKSYIDWIGPAVIKHPDLKPLR 939 Query: 700 LTNSIN----KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------------- 742 + +++ ++ ++ +++E+ ++ +K+ Sbjct: 940 DFAHVQCAALEEDRSQWQVRIWDKKDVIIDKEKAEEETSFLEKLKDINLNSPSSEFYDEV 999 Query: 743 -----LFSPIKNDINEPYILNPSTID-------------------TKGKTNLESLLSDNQ 778 P + + P L+ + I Sbjct: 1000 ARRLNYVYPYEKACHLPAKLSVTEIKRILNEEVIDEDTTSIFEKTVLKTPAFLEERKGLT 1059 Query: 779 TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLEN 834 +G+++H ++Q + L K I + + + + K + + I + Sbjct: 1060 AVEKGVVMHLVMQKLDLNGDLTAEGIKKQIKNMVDRE--ILTEAQAKEVDVKKIEAFFKT 1117 Query: 835 PMMTTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFE 882 P+ + S + EV K + + I + G +D + I + + Sbjct: 1118 PLGMRMLNSQNVRREVPFHIKFKSTEVYKDLPEDYENEFIAVQGIVDCFFEEEGEIVLVD 1177 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 YKT + + +E + Q+ +Y K L+ K + IY+ Sbjct: 1178 YKTDYVTEETLEATKEKYKVQIELYGKALEKI-TGKKVKEKYIYL 1221 >gi|163939035|ref|YP_001643919.1| recombination helicase AddA [Bacillus weihenstephanensis KBAB4] gi|251764507|sp|A9VJ02|ADDA_BACWK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|163861232|gb|ABY42291.1| Recombination helicase AddA [Bacillus weihenstephanensis KBAB4] Length = 1241 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 167/1042 (16%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + Sbjct: 225 LLEDVKFQLETAEKHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-GSWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKRVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+DF LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDFES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYAVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + K + A+ S D + G G Sbjct: 681 SFLKGAPLEEEQELHDKLEWFYKLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 981 ELLEALRDKKAVPLESERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NFITSYCTKNA 813 RG +H ++Q + + I K Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIARMVNKEL 1100 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 + E + + + ++ + ++ S EV + ++ + I Sbjct: 1101 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESI 1159 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPTLEDRYKVQLSLYAKALEKSL 1219 Query: 916 PNKSLVCLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 KHPVKEKCLYFFDGNHVVNIEE 1241 >gi|229166075|ref|ZP_04293837.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH621] gi|228617384|gb|EEK74447.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH621] Length = 1166 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 166/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + Sbjct: 150 LLEDVKFQLETAEKHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-GSWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ ++ + + Sbjct: 269 PVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKASAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGKGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM E K + E S + Sbjct: 906 ELLEALRDKKAVPLESERKEEVYDRLMWEYGYADATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NFITSYCTKNA 813 RG +H ++Q + + I K Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIARMVNKEL 1025 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 + E + + + ++ + ++ S EV + ++ + I Sbjct: 1026 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESI 1084 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1085 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL 1144 Query: 916 PNKSLVCLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 KHPVKEKCLYFFDGNHVVNIDE 1166 >gi|228938359|ref|ZP_04100970.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971238|ref|ZP_04131867.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977847|ref|ZP_04138229.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis Bt407] gi|228781865|gb|EEM30061.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis Bt407] gi|228788473|gb|EEM36423.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821305|gb|EEM67319.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 1166 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 164/1043 (15%), Positives = 336/1043 (32%), Gaps = 147/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66 + +D+ I K L+M P + +TLQ ++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAP--RIETLQADVVLLGTLSSAARESWTSLY 207 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119 + + +K+ +++ K+ L+ K K + + M Sbjct: 208 EAMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDM 267 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 268 HPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYR 327 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 328 NKFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEP 380 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 381 GLFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDAD 437 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 ++ +S + + + ++ + A + AR +A Sbjct: 438 AELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQR 488 Query: 353 ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 489 IKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLA 544 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465 + + +M + R I + D+ +L+SP+ +++D+ + + Sbjct: 545 TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVM 604 Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521 + + K + + A+ S D + G Sbjct: 605 SSFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPA 664 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576 G + L + + E S+ L + +E+ RA + VRIMT Sbjct: 665 GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMT 724 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE PVVF+ G + + +K+ + + K + Sbjct: 725 IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 784 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677 + +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 785 RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAG 844 Query: 678 QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706 + D + S + + + K Sbjct: 845 ASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEK 904 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 E + +EE +L+ + K + E S + Sbjct: 905 QELLEALREKKAVPLQSERKEEVYDRLLWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDN 964 Query: 767 K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814 RG +H ++Q + + N + Sbjct: 965 AFIKKLRVPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITAETLQEQIAGMVNKE 1024 Query: 815 LWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 L ++ + + + + ++ + ++ S EV + + ++ I Sbjct: 1025 LLTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETI 1084 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1085 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL 1144 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 -QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|206967662|ref|ZP_03228618.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134] gi|206736582|gb|EDZ53729.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134] Length = 1241 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A+ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 514 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 QHPVKEKYLYFFDGNHVVNIEE 1241 >gi|229132031|ref|ZP_04260894.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST196] gi|228651431|gb|EEL07403.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST196] Length = 1166 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 162/1041 (15%), Positives = 331/1041 (31%), Gaps = 143/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K +M P L TL A++ + Sbjct: 150 LLEDVKFQLETAEKHIRKATEFAMLPDGPAPRVETLQADLALLGTLSSAAR-GSWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEGGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM E K + E S + Sbjct: 906 ELLEALRDKKAVPLESERKEEVYDRLMWEYGYADATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIASMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + ++ + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSLK 1145 Query: 917 NKSLVCLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1146 HPVKEKCLYFFDGNHVVNIDE 1166 >gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987] gi|81569872|sp|Q73C23|ADDA_BACC1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|42736238|gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987] Length = 1241 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 165/1043 (15%), Positives = 330/1043 (31%), Gaps = 147/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813 RG +H ++Q + + E + I K Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKEL 1100 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 + E + + + ++ + ++ S EV + + + I Sbjct: 1101 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESI 1159 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIAGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL 1219 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 -QHPVKEKCLYFFDGNHVVKIEE 1241 >gi|228919962|ref|ZP_04083316.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839675|gb|EEM84962.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1166 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 164/1041 (15%), Positives = 330/1041 (31%), Gaps = 143/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEERFSL 68 + +D+ I K L+M P T+ A L S + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADAALLGTLSSAARESWTSLYEA 209 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ ++I K+ L+ K K + + M Sbjct: 210 MQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHP 269 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L + + + + + Sbjct: 270 VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEPSENGEMNPSAVALQYRNK 329 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 330 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------AGNLFMVGDVKQSIYRFRLAEPGL 382 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294 L + + + G K I+L +FRS ++L + +F E + D Sbjct: 383 FLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDVDAE 439 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 ++ ++ + + + ++ + A + AR +A I Sbjct: 440 LKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRIK 490 Query: 355 NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 491 AMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 547 YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 606 Query: 466 -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + K + + A+ S D + G G Sbjct: 607 FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L + + E S+ L + +E+ RA + VRIMT+H Sbjct: 667 QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 727 KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 787 MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846 Query: 680 TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708 + D + S + + + K E Sbjct: 847 CYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQE 906 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767 + +EE +LM + K + E S + Sbjct: 907 LLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAF 966 Query: 768 ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816 RG +H ++Q + + N +L Sbjct: 967 IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKELL 1026 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864 ++ + + + + ++ + ++ S EV + + ++ I++ Sbjct: 1027 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILV 1086 Query: 865 SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917 G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1087 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL-Q 1145 Query: 918 KSLV-CLLIYVSEPKVFIIPQ 937 + L + + I + Sbjct: 1146 HPVKEKCLYFFDGNHIVKIEE 1166 >gi|229189331|ref|ZP_04316351.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 10876] gi|228594125|gb|EEK51924.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 10876] Length = 1166 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 329/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A+ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 490 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGS 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWKGNSGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|228964186|ref|ZP_04125309.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar sotto str. T04001] gi|228795536|gb|EEM43020.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar sotto str. T04001] Length = 1166 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 164/1041 (15%), Positives = 330/1041 (31%), Gaps = 143/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEERFSL 68 + +D+ I K L+M P T+ A L S + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADAALLGTLSSAARESWTSLYEA 209 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ ++I K+ L+ K K + + M Sbjct: 210 MQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMQP 269 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L + + + + + Sbjct: 270 VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEPSENGEMNPSAVALQYRNK 329 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 330 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------AGNLFMVGDVKQSIYRFRLAEPGL 382 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294 L + + + G K I+L +FRS ++L + +F E + D Sbjct: 383 FLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDVEAE 439 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 ++ ++ + + + ++ + A + AR +A I Sbjct: 440 LKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRIK 490 Query: 355 NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 491 AMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 547 YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 606 Query: 466 -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + K + + A+ S D + G G Sbjct: 607 FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L + + E S+ L + +E+ RA + VRIMT+H Sbjct: 667 QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 727 KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 787 MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846 Query: 680 TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708 + D + S + + + K E Sbjct: 847 CYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQE 906 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767 + +EE +LM + K + E S + Sbjct: 907 LLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAF 966 Query: 768 ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816 RG +H ++Q + + N +L Sbjct: 967 IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKELL 1026 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864 ++ + + + + ++ + ++ S EV + + ++ I++ Sbjct: 1027 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILV 1086 Query: 865 SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917 G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1087 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL-Q 1145 Query: 918 KSLV-CLLIYVSEPKVFIIPQ 937 + L + + I + Sbjct: 1146 HPVKEKCLYFFDGNHIVKIEE 1166 >gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579] gi|296501840|ref|YP_003663540.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171] gi|81580749|sp|Q81GP9|ADDA_BACCR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|29894836|gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579] gi|296322892|gb|ADH05820.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171] Length = 1241 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 331/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 514 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + ++ I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 QHPVKEKCLYFFDGNHVVNIEE 1241 >gi|196036255|ref|ZP_03103654.1| ATP-dependent nuclease, subunit A [Bacillus cereus W] gi|195991230|gb|EDX55199.1| ATP-dependent nuclease, subunit A [Bacillus cereus W] Length = 1241 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSAAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 TFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRILAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|218233217|ref|YP_002365926.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264] gi|251764502|sp|B7HGP9|ADDA_BACC4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218161174|gb|ACK61166.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264] Length = 1241 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A+ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 514 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKKVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 QHPVKEKCLYFFDGNHVVNIEE 1241 >gi|167635407|ref|ZP_02393721.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442] gi|254740248|ref|ZP_05197940.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Kruger B] gi|167529235|gb|EDR91988.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442] Length = 1241 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLKLGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|152974673|ref|YP_001374190.1| recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|251764504|sp|A7GM37|ADDA_BACCN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152023425|gb|ABS21195.1| Recombination helicase AddA [Bacillus cytotoxicus NVH 391-98] Length = 1242 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 + +D+ I K + L+M P T L +TL A++ + + Sbjct: 226 LLEDVKFQLETATEHIRKAMELAMLPDGPAPRMETLQTDLVLLETLSHAAR-KSWTSVYE 284 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + +K+ ++I K+ L+ K K + + +M Sbjct: 285 AMQHVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQEMH 344 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K + ++ K+ ++DF DL +L ++ + + + Sbjct: 345 PVLGKLVQLVKEFSNRFQAIKRDKGMVDFTDLEHFCLQILSEQGEDGELRPSPVALQYRN 404 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 405 RFAEVLVDEYQDTNFVQESIIKLVTKDS-------EQEGNLFMVGDVKQSIYRFRLAEPG 457 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 458 LFLGKYKRFTQEGLEGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIEYDADA 514 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR IA I Sbjct: 515 ELKLGASYPEGEDVAAELLCIHQSEEEVLDGEEG---------EEVEKAQLEARLIAQRI 565 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V Sbjct: 566 KAMVDSGYTVYDRKTNEMRQVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYAELAT 621 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 622 GYFEATEVNIMMNVFRVIDNPVQDIPLAAVLRSPIVGLNDEELAMLRAHAKKGSFYEVMR 681 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G Sbjct: 682 SFLRGAPLEGGKELHEKLKWFYHLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPGG 741 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 742 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 801 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +++ + + K + + Sbjct: 802 HKSKGLEFPVVFVAGLGRRFNTQDLMQRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 861 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K+ E R+LYV +TRA ++LI+ ++ +++ Sbjct: 862 KMKRELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEMEKWLDTREHTEWLLPDYVRASA 921 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 922 SCYLDWIAPSLYRHRDSEILLELGQGTIPNEIYEYDTSWKVEFVDGKTLLAPEPAQEEKQ 981 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +L + + K + E S + Sbjct: 982 ELLEALREKKAVPLESERKDEVYNRLTWKYEYEDATLQRAKQSVTEIKRNYQSEDGSDTA 1041 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + ++ N ++ Sbjct: 1042 FIQKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKQSITIESIQEQIAKMVNKEI 1101 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + I E+ + + S EV + ++ ++ I+ Sbjct: 1102 LTFEQAEEISVERIVAFFESHLGKRVLEAKSVEREVPFTMMLSAKEAYQNWQGKSEETIL 1161 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + I + ++KT P + + QLS+Y K L+ + Sbjct: 1162 VQGVIDCMIEEDDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKTL- 1220 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1221 QHPVKEKCLYFFDGNHVITIEE 1242 >gi|228906866|ref|ZP_04070735.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL 200] gi|228852870|gb|EEM97655.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL 200] Length = 1166 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 165/1042 (15%), Positives = 335/1042 (32%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADVALLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIEQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++D+ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGLFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + F K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATFYRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + ++ I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|254725483|ref|ZP_05187265.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A1055] Length = 1241 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 163/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|49480014|ref|YP_035378.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81613917|sp|Q6HM43|ADDA_BACHK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49331570|gb|AAT62216.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1241 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 514 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREYSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames] gi|47526411|ref|YP_017760.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49184081|ref|YP_027333.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. Sterne] gi|65318520|ref|ZP_00391479.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Bacillus anthracis str. A2012] gi|165873114|ref|ZP_02217732.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488] gi|167640214|ref|ZP_02398480.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193] gi|170688037|ref|ZP_02879249.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465] gi|177655492|ref|ZP_02936935.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174] gi|190566724|ref|ZP_03019641.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I] gi|227816013|ref|YP_002816022.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684] gi|229601554|ref|YP_002865672.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248] gi|254682690|ref|ZP_05146551.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CNEVA-9066] gi|254734108|ref|ZP_05191821.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Western North America USA6153] gi|254753588|ref|ZP_05205624.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Vollum] gi|254758685|ref|ZP_05210712.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Australia 94] gi|81583096|sp|Q81TW1|ADDA_BACAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|30254863|gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames] gi|47501559|gb|AAT30235.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49178008|gb|AAT53384.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne] gi|164711168|gb|EDR16727.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488] gi|167511815|gb|EDR87195.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193] gi|170667932|gb|EDT18683.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465] gi|172080091|gb|EDT65187.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174] gi|190562276|gb|EDV16244.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I] gi|227003890|gb|ACP13633.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684] gi|229265962|gb|ACQ47599.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248] Length = 1241 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|229068796|ref|ZP_04202092.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus F65185] gi|229078429|ref|ZP_04210990.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock4-2] gi|228704851|gb|EEL57276.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock4-2] gi|228714304|gb|EEL66183.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus F65185] Length = 1166 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A+ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 490 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|289577484|ref|YP_003476111.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9] gi|289527197|gb|ADD01549.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9] Length = 1230 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 157/1005 (15%), Positives = 351/1005 (34%), Gaps = 136/1005 (13%) Query: 35 VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ---EINK 91 + +++ +A L++ + + EE +++ + K+ + E+ K Sbjct: 241 AEIGLQSYLDNFEIEAGNLEKLLECENWEEFRKQINAIKFDRLPKAGKDADPKVKEEVTK 300 Query: 92 KSPDLKEKLKKSQ-----DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 ++K K+K+ + D+ KI + + A + L + Y + K++ + Sbjct: 301 IRNEVKAKIKEIRNKFFSDDIEKIEEEIKVL--YPIMKALVDLILLFDKKYADKKREKGI 358 Query: 147 LDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +DF D+ +L + D + + ++ I +DE QD++LIQ ++ ++ Sbjct: 359 IDFNDIEHFALKILTEVDEKGKMKPSEVALMYREKFQEIFVDEYQDSNLIQEVILSTIAR 418 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + F VGD KQSIY F A P + + + I L Sbjct: 419 EDT---------PNRFMVGDVKQSIYRFRQANPYIFFEKYNTYSSKEEDKN---KKILLY 466 Query: 262 LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLWEQ 313 +FRS + I+ V+ +F N + + + + G V++ Sbjct: 467 KNFRSRSQIIDAVNFIFKKIMSKNVGEIDYTDEEKLNYGADFGTPPLGAIVGGPVEIHLI 526 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-------FSNG 366 + + + + ++E + + AR + I ++ + Sbjct: 527 ---EKNDEISEEEEVEVYEEEEEEVIDNIQGEARVASQRIKELVNQSERGIFMVYDKNLK 583 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 R ++ +DI++L+R T + + I + + IK +++L + Sbjct: 584 NYRPVEYRDIVILLRA---TERWAPVFLEELINAGIPAFADTGTGYFETTEIKTIISLLQ 640 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQH 483 I + D+ + +L+SP+F+F+ +++ I +T+YE ++K A K Sbjct: 641 VIDNPMQDIPLLAVLRSPIFSFTPEELIDI-RLEEPNKTIYEALKKAAQRQDELGQKIVF 699 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQN 542 +K + + A + +F + G + L + E+ Sbjct: 700 FLKSLKKWQEKAIYMPVDEFLWYLYQDTGYYAYVGAMPQGVQRQANLRILFERAKQYEET 759 Query: 543 SYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 S+ L I+ + + N N VRIM++H +KGLE PVV + G Q Sbjct: 760 SFKGLFNFINFINRLKVSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQF 819 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + L P + + + + + +K + E R+LYV +TR Sbjct: 820 NLKDLSQSVLYHHLLGLGPEFVDFKRRISYPSIVKEAIKNKIKLESLSEEMRVLYVALTR 879 Query: 658 ASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIK 699 A ++LI+ EK +++ D + + +K ++ Sbjct: 880 AKEKLILVGSVKDIKEKVKKWCNIAMLGNKVPEYEVLKGKSYIDWIGPAVIKHPDLKPLR 939 Query: 700 LTNSIN----KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------------- 742 + +++ ++ ++ +++E+ ++ +K+ Sbjct: 940 DFAHVQCAALEEDRSQWQVRIWDKKDVIIDKEKAEEETSFLEKLKDIDLNSPSSEFYDEV 999 Query: 743 -----LFSPIKNDINEPYILNPSTID-------------------TKGKTNLESLLSDNQ 778 P + + P L+ + I Sbjct: 1000 ARRLNYVYPYEKACHLPAKLSVTEIKRILNEEVIDEDTTSIFEKTVLKTPAFLEERKGLT 1059 Query: 779 TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLEN 834 +G+++H ++Q + L K I + + + + K + + I + Sbjct: 1060 AVEKGVVMHLVMQKLDLNGDLTAEGIKKQIKNMVDRE--ILTEAQAKEVDVKKIEAFFKT 1117 Query: 835 PMMTTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFE 882 P+ + S + EV K+ + + I + G +D + I + + Sbjct: 1118 PLGMRMLNSQNVRREVPFHIKLKSTEVYKDLPEDYENEFIAVQGIVDCFFEEEGEIVLVD 1177 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 YKT + + +E + Q+ +Y K L+ K + IY+ Sbjct: 1178 YKTDYVTEETLEATKEKYKVQIELYGKALEKI-TGKKVKEKYIYL 1221 >gi|196044179|ref|ZP_03111415.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108] gi|196024818|gb|EDX63489.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108] Length = 1241 Score = 407 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 161/1042 (15%), Positives = 329/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHHDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|229126550|ref|ZP_04255564.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-Cer4] gi|229143847|ref|ZP_04272266.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST24] gi|228639608|gb|EEK96019.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST24] gi|228656939|gb|EEL12763.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-Cer4] Length = 1166 Score = 407 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 164/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + ++ I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|228951606|ref|ZP_04113710.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808067|gb|EEM54582.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1166 Score = 407 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 331/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A+Q + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAQ-ESWTSLYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 490 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|206976508|ref|ZP_03237414.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97] gi|222094863|ref|YP_002528923.1| ATP-dependent nuclease, subunit a [Bacillus cereus Q1] gi|251764505|sp|B9ITE9|ADDA_BACCQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|206745191|gb|EDZ56592.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97] gi|221238921|gb|ACM11631.1| ATP-dependent nuclease, subunit A [Bacillus cereus Q1] Length = 1241 Score = 407 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 166/1043 (15%), Positives = 332/1043 (31%), Gaps = 147/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813 RG +H ++Q + + E + I K Sbjct: 1041 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKEL 1100 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 + E + + + ++ + ++ S EV + + + I Sbjct: 1101 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESI 1159 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL 1219 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 -QHPVKEKCLYFFDGNHVVKIEE 1241 >gi|196037643|ref|ZP_03104954.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99] gi|196031885|gb|EDX70481.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99] Length = 1241 Score = 407 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 161/1042 (15%), Positives = 329/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 TFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPGEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|228957511|ref|ZP_04119263.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802103|gb|EEM48968.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pakistani str. T13001] Length = 1166 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 164/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVESGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + ++ I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|228913817|ref|ZP_04077442.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845756|gb|EEM90782.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1240 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 163/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 224 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 282 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 283 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 342 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 343 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 402 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 403 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 455 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 456 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 512 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 513 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 563 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 564 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 619 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 620 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 679 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 680 TFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 739 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 740 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 799 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 800 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 859 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 860 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 919 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 920 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 979 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 980 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1039 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1040 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1099 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1100 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1159 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1160 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1218 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1219 QHPVKEKCLYFFDGNHVIKVEE 1240 >gi|229010530|ref|ZP_04167732.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides DSM 2048] gi|228750728|gb|EEM00552.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides DSM 2048] Length = 1166 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 165/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + Sbjct: 150 LLEDVKFQLETAEKHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-GSWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEGGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + + + + + K Sbjct: 846 SCYLDWIAPALYRHRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM E + K + E S + Sbjct: 906 ELLEALRDKKAVPLESERKEEVYDRLMWEYGYAEATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NFITSYCTKNA 813 RG +H ++Q + + I K Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIARMVNKEL 1025 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 + E + + + ++ + ++ S EV + ++ + I Sbjct: 1026 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESI 1084 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT Q + + QLS+Y K L+ S Sbjct: 1085 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFLGGFDQAKPILEDRYKVQLSLYAKALEKSL 1144 Query: 916 PNKSLVCLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 KHPVKEKSLYFFDGNHVVNIDE 1166 >gi|229149444|ref|ZP_04277680.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1550] gi|228634086|gb|EEK90679.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1550] Length = 1166 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 164/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A+ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 546 GYFEATEVTIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKDKCLYFFDGNHVVNIEE 1166 >gi|229028911|ref|ZP_04185012.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1271] gi|228732482|gb|EEL83363.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1271] Length = 1166 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 164/1042 (15%), Positives = 331/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEERFSL 68 + +D+ I K L+M P T+ A L + S + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADAVLLGKLSSAARESWTSVYEA 209 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ +++ K+ L+ K K + + M Sbjct: 210 MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHP 269 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L ++ + + + + Sbjct: 270 VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRNK 329 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 330 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 382 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 383 FLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 439 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 ++ +S + + + ++ + A + AR +A I Sbjct: 440 LKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRIK 490 Query: 355 NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + + K R +Q +D ++L+R I V + Sbjct: 491 AMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLATG 546 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 547 YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 606 Query: 466 -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + K + + A+ S D + G G Sbjct: 607 FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L + + E S+ L + +E+ RA + VRIMT+H Sbjct: 667 QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 727 KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 787 MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846 Query: 680 TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708 + D + S + + + K E Sbjct: 847 CYLDWIAPSLYRHRDSEMLLELGQGSIPGEIYDYDTSWKVEVVDGGTLLAPEPVQEEKQE 906 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767 + +EE +LM + + K + E S + Sbjct: 907 LLEALREKKAVPLQSERKEEVYDRLMWKYGYDEATSHRAKQSVTEIKRNYQSEEGSDNAF 966 Query: 768 ----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAK 814 RG +H ++Q + + E + I+ K Sbjct: 967 IKKMRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQISGMVNKELL 1026 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 + E + + + ++ + ++ S EV + + + I+ Sbjct: 1027 TFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVKIEE 1166 >gi|228932517|ref|ZP_04095398.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827207|gb|EEM72960.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1166 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1145 QHPVKEKCLYFFDGNHVIKVEE 1166 >gi|301052778|ref|YP_003790989.1| ATP-dependent nuclease subunit A [Bacillus anthracis CI] gi|300374947|gb|ADK03851.1| ATP-dependent nuclease, subunit A [Bacillus cereus biovar anthracis str. CI] Length = 1241 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|255523282|ref|ZP_05390252.1| recombination helicase AddA [Clostridium carboxidivorans P7] gi|255512936|gb|EET89206.1| recombination helicase AddA [Clostridium carboxidivorans P7] Length = 1226 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 157/966 (16%), Positives = 308/966 (31%), Gaps = 136/966 (14%) Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 +F L K + + + E + + + +M+ Sbjct: 277 QFEKLPVKRNKDADKEAKEKSKKIRDDVKKKITEISEDIFLKMSSMGKDLK--EMYPKMK 334 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINH 179 + + N Y K++ ++DF D+ ++L + I + Q+ Sbjct: 335 SLGKIVMEFNERYGAKKRERGLVDFNDIEHFCLNILIDTKENGDITPSKIALEYRQKFEE 394 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 ILIDE QD++ +Q ++ ++ + + F VGD KQSIY F A+P+ L Sbjct: 395 ILIDEYQDSNEVQEVIMNAI--------SKKNDIPNTFMVGDVKQSIYRFRQAKPELFLD 446 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRH 297 + N I+L +FRS +I+ V+ VF+ N L D ++ Sbjct: 447 KYNRYSD---NRVGNERKIKLFKNFRSRPEIIFAVNYVFNQIMSVNIGELEYDEGEMLKS 503 Query: 298 RSSRIGQVGTV-------QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILARR 348 + V +L ++ + Q + +++ +E+ I AR Sbjct: 504 GADFPELGENVMDAESKIELHLLDKKDNEVCEDNSQNPEGAEAENINEETPDNIQIEARL 563 Query: 349 IAYTISNMIGTD----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 + I ++I + K R + KDI++L+R + + I V Sbjct: 564 VGKRIIDLINNEKFKVYDKDEKKYRNVTYKDIVILLRTTSNWA---PTFVEELKSFGIPV 620 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--- 461 + D++ I+ +++L + I + D+ + +L+SP+ FS ++I I Sbjct: 621 FADTNTGYFDNIEIRTIISLLQIIDNPIQDIPLLSILRSPIEGFSSEEIIDIRMVDRNIN 680 Query: 462 ---------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 E++ E I+ + K + + + + + + +F I Sbjct: 681 FFSALKIIIESDDADERIKHVSKELKDKVSNFLNKLKKWRKKSLYMPIDEFIWYIYTDTG 740 Query: 513 GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHS 566 G + L + E SY L I+ + + Sbjct: 741 YYGFVGAMPGGKQRQANLRILFQRAKQYESTSYKGLFNFINFINKLRNSSGDMGSAKILG 800 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 N + VRIM+VH +KGLE PVV L TG + + L P + Sbjct: 801 ENEDVVRIMSVHKSKGLEFPVVILSGTGKNFNLMDMNRSVLFHSELGLGPEYVNIDRRIS 860 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------- 678 L K +K T E R+LYV +TRA ++LII + + Sbjct: 861 YPTIAKQVLKKKIKVETLSEEMRILYVALTRAKEKLIITGTAKDLEKTSEKWCEAIKYEE 920 Query: 679 -------------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + D +K +W W + Sbjct: 921 GKIPEYVVINAKNYLDWIVPAVAKHLSGKVIRDIGGVYDFEPLVDDKSKWCVKLWRKENF 980 Query: 720 ENTPLEREETIKQLM---------------DEQKIPKKLFSPIKNDINEPYILNPSTI-- 762 +N + E + +E K N P + S I Sbjct: 981 KNDLRDENEKEDIIKIVKDESLNGGNSIYYEEVNRRLNWQYKYKESCNIPSKFSVSEIKR 1040 Query: 763 -----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---LPEHKRK 802 K + +G ++H ++Q + + Sbjct: 1041 RFDFLSADEGSSFLVDSSKLNKPVFLQKTTKLSASEKGTLLHTVMQHVDLKKVSNYEEIS 1100 Query: 803 NFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN---- 856 N + + +E ++ I + + + + S EV ++ Sbjct: 1101 NQVNDLVNRE--FITREEANSIDANKILKFFNSSLGKRMIKSKKVLREVPFIVSLDSTEL 1158 Query: 857 --------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 ++ +++ G ID + + +YKT + +++ I + Q+ Y+ Sbjct: 1159 YKDLPRDVYGEEKVLLQGIIDCYFEEDDELVLLDYKTDYV--DDLDKIKERYSVQIKCYK 1216 Query: 909 KILKDS 914 L+ Sbjct: 1217 NALERL 1222 >gi|229090184|ref|ZP_04221432.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-42] gi|228693120|gb|EEL46833.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-42] Length = 1166 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEGGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPGEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1145 QHPVKEKCLYFFDGNHVIKVEE 1166 >gi|324325258|gb|ADY20518.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1241 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 165/1043 (15%), Positives = 336/1043 (32%), Gaps = 147/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVRFQLETAEQHIRKATELAMLADGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 514 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREYSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAK 814 RG +H ++Q + L + + I N + Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHV-DLKKPITEEVIREQIAGMVNKE 1099 Query: 815 LWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 L ++ + + + + ++ + ++ S EV + + + I Sbjct: 1100 LLTFQQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESI 1159 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIAGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL 1219 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 -QHPVKEKCLYFFDGNHVVKIEE 1241 >gi|229177656|ref|ZP_04305033.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 172560W] gi|228605846|gb|EEK63290.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 172560W] Length = 1166 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A+ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 490 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLVAEEAYQDWQGNSGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166 >gi|170707635|ref|ZP_02898087.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389] gi|170127410|gb|EDS96285.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389] Length = 1241 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 160/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R + V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSM----PWAPQIMEELKLQGVPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|229154809|ref|ZP_04282924.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 4342] gi|228628757|gb|EEK85469.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 4342] Length = 1166 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLVLLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEILLELGQGSIPDEIYGYSASWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVKIEE 1166 >gi|229016490|ref|ZP_04173431.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1273] gi|229022699|ref|ZP_04179223.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1272] gi|228738511|gb|EEL88983.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1272] gi|228744757|gb|EEL94818.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1273] Length = 1166 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 162/1041 (15%), Positives = 329/1041 (31%), Gaps = 143/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68 + +D+ I K L+M P ++ + + Sbjct: 150 LLEDVKFQLETAEEHIRKATELAMLPDGPAPRVETLQADAVLLGTLSSAACESWTSVYEA 209 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ +++ K+ L+ K K + + M Sbjct: 210 MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHP 269 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L ++ + + + + Sbjct: 270 VLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNK 329 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 330 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 382 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 383 FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 439 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 ++ +S + + + ++ + A + AR +A I Sbjct: 440 LKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRIK 490 Query: 355 NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 491 AMVDSGYEVYDRKTDSMRQVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 547 YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 606 Query: 466 -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + K + + A+ S D + G G Sbjct: 607 FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L + + E S+ L + +E+ RA + VRIMT+H Sbjct: 667 QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 727 KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 787 MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHGEWLLPDHIRAGAS 846 Query: 680 TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708 + D + S + + + K E Sbjct: 847 CYLDWIAPSLYRHRDSEMLLELGQGNIPVDIYEYDTSWKVEVVDGKDLLAPEPVQEEKQE 906 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767 + +EE +LM E K + E S + Sbjct: 907 LLEALREKKAVPLESERKEEVYDRLMWEYGHEDATSHRAKQSVTEIKRNYQSEEGSDNAF 966 Query: 768 ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NFITSYCTKNAK 814 RG +H ++Q + + I K Sbjct: 967 IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIARMVNKELL 1026 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 + E + + + ++ + ++ S EV + ++ + I+ Sbjct: 1027 TFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEENGITLIDFKTDTIEGKFPGGFDQAKPTLEDRYKVQLSLYAKALEKSLK 1145 Query: 917 NKSLVCLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1146 HPVKEKCLYFFDGNHVVNIEE 1166 >gi|229056867|ref|ZP_04196263.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH603] gi|228720395|gb|EEL71968.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH603] Length = 1166 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 162/1007 (16%), Positives = 323/1007 (32%), Gaps = 141/1007 (14%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 L TL A++ + + + +K+ +++ K+ L+ K K Sbjct: 187 ADLALLGTLSSAAR-GSWTSVYEAMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEV 245 Query: 105 DEFIKIRDRFNT-------YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 + + M + L K ++ K+ ++DF DL Sbjct: 246 KKLQEELFSRRPESFLRDFQDMHPVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCL 305 Query: 158 DLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212 +L ++ + + + + +L+DE QDT+ +Q +I+ +T+D Sbjct: 306 QILSEQSEDGEMKPSAVALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSES------- 358 Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272 LF VGD KQSIY F AEP L + + + + G K I+L +FRS ++L Sbjct: 359 EGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLDGGMK---IDLAKNFRSRHEVLA 415 Query: 273 VVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + +F E + D+ ++ +S + + + ++ Sbjct: 416 GTNFIFKQIMGEEVGEIDYDADAELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG--- 472 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTP 387 + A + AR +A I M+ + + K R +Q +D ++L+R P Sbjct: 473 ------AEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAP 526 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 I + I V + + + +M + R I + D+ +L+SP+ Sbjct: 527 QIMEELK----LQGIPVYADLATGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVG 582 Query: 448 FSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 +++++ + + + + K + + A+ S Sbjct: 583 LNDEELATLRAHGKKGSFYEVMSLFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSL 642 Query: 501 HDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--- 556 D + G G + L + + E S+ L + +E+ Sbjct: 643 SDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILE 702 Query: 557 --YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 RA + VRIMT+H +KGLE PVVF+ G + + +K+ + Sbjct: 703 RGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGF 762 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + K + + +K E R+LYV +TRA ++LI+ +N++ Sbjct: 763 GSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKE 822 Query: 675 -------------------KSNQRTWYDMVYDSFHNDERVKKI----------------- 698 ++ + D + S + + + Sbjct: 823 MEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRHRDSEMLLELGQGNIPGEIYEYSA 882 Query: 699 --------------KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 K E + +EE +LM E Sbjct: 883 SWKVEVVDGKDLLAPEPVQEEKQELLEALRDKKAVPLESERKEEVYDRLMWEYGYADATS 942 Query: 745 SPIKNDINEPYILNPSTIDTKGK-----------TNLESLLSDNQTFNRGLIIHKLLQVI 793 K + E S + RG +H ++Q + Sbjct: 943 HRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHV 1002 Query: 794 FTLPEHKRK---NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEV 849 + I K + E + + + ++ + ++ S EV Sbjct: 1003 DLKKPITIEVLQEQIARMVNKELLTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREV 1061 Query: 850 SVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHI 896 + ++ + I++ G ID + + I + ++KT P + Sbjct: 1062 PFTMMLSAEEAYQDWQGKKGETILVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQA 1121 Query: 897 P----YTHIAQLSIYEKILKD--SYPNKSLVCLLIYVSEPKVFIIPQ 937 + QLS+Y K L+ YP K L + V I + Sbjct: 1122 KPILEDRYKVQLSLYAKALEKSLKYPVK--EKCLYFFDGNHVVNIDE 1166 >gi|118476726|ref|YP_893877.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus thuringiensis str. Al Hakam] gi|225863093|ref|YP_002748471.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102] gi|251764499|sp|A0RAX7|ADDA_BACAH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|118415951|gb|ABK84370.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus thuringiensis str. Al Hakam] gi|225787430|gb|ACO27647.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102] Length = 1241 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 163/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|217958719|ref|YP_002337267.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187] gi|251764503|sp|B7HZR5|ADDA_BACC7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|217066718|gb|ACJ80968.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187] Length = 1241 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 164/1043 (15%), Positives = 332/1043 (31%), Gaps = 147/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813 RG +H ++Q + + E + I K Sbjct: 1041 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKEL 1100 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 + E + + + ++ + ++ S EV + + + I Sbjct: 1101 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESI 1159 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL 1219 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 -QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein [Bacillus cereus G9241] gi|47555796|gb|EAL14136.1| reticulocyte binding protein [Bacillus cereus G9241] Length = 1241 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLVLLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQILSEQSESGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 514 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEILLELGQGSIPDEIYGYSASWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT Q + + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFSGGFEQAKPILEERYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1220 QHPVKEKCLYFFDGNHVVKIEE 1241 >gi|229108699|ref|ZP_04238309.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-15] gi|228674729|gb|EEL29963.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-15] Length = 1166 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 163/1043 (15%), Positives = 336/1043 (32%), Gaps = 147/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 ++ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAIVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + ++ I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKD--S 914 + G ID + + I + ++KT P + + QLS+Y K L+ Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSLQ 1145 Query: 915 YPNKSLVCLLIYVSEPKVFIIPQ 937 +P K + L + V I + Sbjct: 1146 HPVKEI--CLYFFDGNHVVNIEE 1166 >gi|228990221|ref|ZP_04150190.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM 12442] gi|228769504|gb|EEM18098.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM 12442] Length = 1182 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 161/1041 (15%), Positives = 326/1041 (31%), Gaps = 144/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K + L+M P L TL A+ Q + Sbjct: 166 LLEDVKFQLETAEKHIRKAIELAMLPDGPAPRIETLQADLVLLGTLSSAAH-QSWTSVYE 224 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KMF 120 + + +K+ +EI K+ L+ K K + + M Sbjct: 225 AMQNVSWQTLKRIKKSDYNEEIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFKDMH 284 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQ 175 + + K ++ K+ ++DF DL +L +R S+ + + Sbjct: 285 PVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERANDGGLRSSPVALQYRN 344 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+DF LF VGD KQSIY F AEP Sbjct: 345 KFAEVLVDEYQDTNFVQESIIKFVTKDF-------EQKGNLFMVGDVKQSIYRFRLAEPG 397 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293 L + + I+L +FRS ++L + +F + D+ Sbjct: 398 LFLGKYKRFT---PEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADA 454 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + ++ + A + AR +A I Sbjct: 455 ELKLGASYPEGEDVAAELLCIHQSEGEESVEGEDGV--------EVEKAQLEARLMAQRI 506 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R P I + I V Sbjct: 507 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYAELAT 562 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 563 GYFEATEVTVMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELAMLRAHEKKGSFYEVMR 622 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K Q + A+ S D + G Sbjct: 623 SFLQGAPLEEEAELHGKLQWFYNLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPAG 682 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 683 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 742 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 743 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 802 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ ++ ++ Sbjct: 803 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWLDSREHTDWLLPDYVRAGA 862 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 863 SCYLDWIAPSLYRHHDSEMLLELGQGNIPNEIYEYNASWKVEVVDGGTLLAPEPVQEEKQ 922 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +L E K + E S + Sbjct: 923 ELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQSVTEIKRNYQSEDGSDNA 982 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 983 FIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHVNLQQPITLETVQEQIAEMVNKEL 1042 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK----------KDII 863 ++ + + + I + + ++ S EV + ++ + + ++ Sbjct: 1043 LTFEQAEEIAIDRIVAFFDTDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQNQSRESVL 1102 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916 + G ID + + + + ++KT Q + + QLS+Y K L+ S Sbjct: 1103 VQGVIDCMIEEEDGVVLIDFKTDTIEGKFSGGFDQAKPILAERYKVQLSLYAKALEKSL- 1161 Query: 917 NKSLV-CLLIYVSEPKVFIIP 936 + + L + + + Sbjct: 1162 HHPVKEKCLYFFDGNHIVHVD 1182 >gi|229160194|ref|ZP_04288193.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus R309803] gi|228623155|gb|EEK79982.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus R309803] Length = 1166 Score = 405 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 162/1041 (15%), Positives = 334/1041 (32%), Gaps = 143/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEERFSL 68 + +D+ I K L+M P T+ L S + + Sbjct: 150 LLEDVKFQLETAELHIRKATELAMLPDGPAPRVETLQADIALLGTLSSSARESWTSVYEA 209 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ ++I K+ L+ K K + + M Sbjct: 210 MQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHP 269 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L ++ + + + + Sbjct: 270 VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRNK 329 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 330 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 382 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 383 FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 439 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 ++ ++ + + + ++ + A + AR +A I Sbjct: 440 LKLGATYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRIK 490 Query: 355 NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 491 AMVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 547 YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELAMLRAHGKKGSFYEVMSS 606 Query: 466 -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + K + + A+ S D + G G Sbjct: 607 FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L + + E S+ L + +E+ RA + VRIMT+H Sbjct: 667 QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 727 KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 787 MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846 Query: 680 TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708 + D + S + + + K E Sbjct: 847 CYLDWIASSLYRHRDSEMLLELGQGSIPGEIYEYDTNWKVEVVDGNTLLAPEPVQEEKQE 906 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767 + +EE +L+ + + K + E S + Sbjct: 907 LLEALREKKAVPLQSERKEEVYDRLLWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAF 966 Query: 768 ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816 RG +H ++Q + + N +L Sbjct: 967 IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITAETLQEQIAGMVNKELL 1026 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864 ++ + + + + ++ + ++ S EV + + ++ I++ Sbjct: 1027 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEEAILV 1086 Query: 865 SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917 G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1087 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL-Q 1145 Query: 918 KSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1146 HPVKEKCLYFFDGNHVVHIEE 1166 >gi|229195442|ref|ZP_04322210.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1293] gi|228587982|gb|EEK46032.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1293] Length = 1166 Score = 405 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 164/1043 (15%), Positives = 332/1043 (31%), Gaps = 147/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813 RG +H ++Q + + E + I K Sbjct: 966 FIKKIRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKEL 1025 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 + E + + + ++ + ++ S EV + + + I Sbjct: 1026 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESI 1084 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1085 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL 1144 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1145 -QHPVKEKCLYFFDGNHVIKVEE 1166 >gi|218902338|ref|YP_002450172.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820] gi|251764500|sp|B7JDU4|ADDA_BACC0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218537459|gb|ACK89857.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820] Length = 1240 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 164/1043 (15%), Positives = 332/1043 (31%), Gaps = 148/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66 + +D+ I K L+M P + +TLQ A+ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAP--RIETLQADLALFGTLSAAARESWTSVY 282 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119 + + +K+ ++I K+ L+ K K + + M Sbjct: 283 EAMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDM 342 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 343 HPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYR 402 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 403 NKFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEP 455 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 456 GLFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDAD 512 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 ++ +S + + + + A + AR +A Sbjct: 513 AELKLGASYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQR 562 Query: 353 ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 563 IKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLA 618 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 619 TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVM 678 Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521 + + K + + A+ S D + G Sbjct: 679 SSFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPA 738 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576 G + L + + E S+ L + +E+ RA + VRIMT Sbjct: 739 GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMT 798 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE PVVF+ G + + +K+ + + K + Sbjct: 799 IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 858 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677 + +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 859 RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAG 918 Query: 678 QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706 + D + S + + + K Sbjct: 919 ASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEK 978 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 E + +EE +LM + + + K + E S + Sbjct: 979 QELLEALREKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDN 1038 Query: 767 K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814 RG +H ++Q + + N + Sbjct: 1039 AFIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKE 1098 Query: 815 LWPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 L ++ + + + ++ + ++ S EV + + + I Sbjct: 1099 LLTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESI 1158 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1159 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL 1218 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1219 -QHPVKEKCLYFFDGNHVIKVEE 1240 >gi|229042983|ref|ZP_04190714.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH676] gi|228726323|gb|EEL77549.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH676] Length = 1165 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 164/1042 (15%), Positives = 332/1042 (31%), Gaps = 146/1042 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P + TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSLYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQRI 488 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 489 KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 544 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ S++++ + + Sbjct: 545 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 604 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 605 SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 664 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 665 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 724 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 725 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 784 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 785 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 844 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 845 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 904 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + K + E S + Sbjct: 905 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 964 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 965 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1024 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + ++ I+ Sbjct: 1025 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1084 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1085 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1143 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1144 QHPVKEKCLYFFDGNHVVNIEE 1165 >gi|228926280|ref|ZP_04089354.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833377|gb|EEM78940.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1165 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 146/1042 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSAAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQRI 488 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R P I + I V + Sbjct: 489 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 544 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 545 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 604 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 605 TFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 664 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 665 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 724 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 725 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 784 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 785 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 844 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 845 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 904 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 905 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 964 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 965 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1024 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1025 LTFEQAEEIAVEKVISFFDSDLGKRILAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1084 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1085 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1143 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1144 QHPVKEKCLYFFDGNHVIKVEE 1165 >gi|228984311|ref|ZP_04144492.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775428|gb|EEM23813.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1166 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 165/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLVLLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQVLSEQSENGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ ++ + + + ++ + A + AR +A I Sbjct: 439 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATAHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + E+ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAIEKVISFFESDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1145 QHPVKEKCLYFFDGNHVVKIEE 1166 >gi|229183444|ref|ZP_04310669.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BGSC 6E1] gi|228600028|gb|EEK57623.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BGSC 6E1] Length = 1166 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 163/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 845 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 846 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + ++E +LM + + K + E S + Sbjct: 906 ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 965 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 966 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1026 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1144 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1145 QHPVKEKCLYFFDGNHVIKVEE 1166 >gi|229171886|ref|ZP_04299455.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus MM3] gi|228611596|gb|EEK68849.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus MM3] Length = 1166 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 159/1041 (15%), Positives = 332/1041 (31%), Gaps = 143/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68 + +D+ + I K L+M P ++ + + Sbjct: 150 LLEDVKFQLETAETHIRKATELAMLPDGPAPRVETLQADAVLLGTLSSAARESWTSVYEA 209 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ +++ K+ L+ K K + + M Sbjct: 210 MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHP 269 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L ++ + + + + Sbjct: 270 VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEMKPSAVALQYRNK 329 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 330 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 382 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 383 FLGKYKRFTQEGLDGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 439 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 ++ +S + + + ++ + A + AR +A I Sbjct: 440 LKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRIK 490 Query: 355 NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 491 AMVDSGYTVYDRKTNEMRQVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 547 YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMST 606 Query: 466 -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + K + + A+ S D + G G Sbjct: 607 FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L + + E S+ L + +E+ RA + VRIMT+H Sbjct: 667 QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 727 KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 787 MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846 Query: 680 TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708 + D + S + + + K E Sbjct: 847 CYLDWIAPSLYRHRDSEMLLELGQGSIPGEIYEYDTNWKVEVVDGKTLLAPEPVQEEKQE 906 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767 + +EE +LM + + K + E S + Sbjct: 907 LLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAF 966 Query: 768 ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816 RG +H ++Q + + N +L Sbjct: 967 IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKELL 1026 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864 ++ + + + + ++ + ++ S EV + + + I++ Sbjct: 1027 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSDETILV 1086 Query: 865 SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917 G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1087 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL-Q 1145 Query: 918 KSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1146 HPVKEKCLYFFDGNHVVKVEE 1166 >gi|228944850|ref|ZP_04107213.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814878|gb|EEM61136.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 1165 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 164/1042 (15%), Positives = 332/1042 (31%), Gaps = 146/1042 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRSESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQRI 488 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 489 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 544 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 545 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 604 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 605 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 664 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 665 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 724 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 725 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 784 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 785 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 844 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 845 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYRYDTSWKVEVVDGNTLLAPEPVQEEKQ 904 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + + K + E S + Sbjct: 905 ELLEALREKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDNA 964 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 965 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1024 Query: 816 WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + ++ + ++ S EV + + + I+ Sbjct: 1025 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1084 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1085 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1143 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1144 QHPVKEKCLYFFDGNHVIKVEE 1165 >gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L] gi|81689028|sp|Q63EM2|ADDA_BACCZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|51977657|gb|AAU19207.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L] Length = 1241 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 164/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ ++I K+ L+ K K + + M Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 344 PVLEKLVQLVKVFTGRFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 404 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 514 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 681 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 741 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 801 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 861 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 921 SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 981 ELLEALREKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 1041 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPVTVEVLQEQIAGMVNKEL 1100 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + + + I+ Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEVRYKVQLSLYAKALEKSL- 1219 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241 >gi|229120765|ref|ZP_04250008.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 95/8201] gi|228662770|gb|EEL18367.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 95/8201] Length = 1165 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 164/1043 (15%), Positives = 332/1043 (31%), Gaps = 148/1043 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66 + +D+ I K L+M P + +TLQ A+ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAP--RIETLQADLALFGTLSAAARESWTSVY 207 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119 + + +K+ ++I K+ L+ K K + + M Sbjct: 208 EAMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDM 267 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 268 HPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYR 327 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 328 NKFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEP 380 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 381 GLFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDAD 437 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 ++ +S + + + + A + AR +A Sbjct: 438 AELKLGASYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQR 487 Query: 353 ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 488 IKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLA 543 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 544 TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVM 603 Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521 + + K + + A+ S D + G Sbjct: 604 SSFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPA 663 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576 G + L + + E S+ L + +E+ RA + VRIMT Sbjct: 664 GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMT 723 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE PVVF+ G + + +K+ + + K + Sbjct: 724 IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 783 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677 + +K E R+LYV +TRA ++LI+ + ++ ++ Sbjct: 784 RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAG 843 Query: 678 QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706 + D + S + + + K Sbjct: 844 ASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEK 903 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 E + +EE +LM + + + K + E S + Sbjct: 904 QELLEALREKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDN 963 Query: 767 K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814 RG +H ++Q + + N + Sbjct: 964 AFIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKE 1023 Query: 815 LWPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862 L ++ + + + ++ + ++ S EV + + + I Sbjct: 1024 LLTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESI 1083 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915 ++ G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1084 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL 1143 Query: 916 PNKSLV-CLLIYVSEPKVFIIPQ 937 + L + V + + Sbjct: 1144 -QHPVKEKCLYFFDGNHVIKVEE 1165 >gi|212640054|ref|YP_002316574.1| ATP-dependent exoDNAse (exonuclease V) subunit beta (contains helicase and exonuclease domains) [Anoxybacillus flavithermus WK1] gi|251764497|sp|B7GM51|ADDA_ANOFW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|212561534|gb|ACJ34589.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Anoxybacillus flavithermus WK1] Length = 1209 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 141/1013 (13%), Positives = 320/1013 (31%), Gaps = 115/1013 (11%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 +++ + + + + + E G P + + L++A + ++ Sbjct: 222 LFQAVDLALEAAEYRLAQALQKTKEPGGPDYLYDTLASDEQVIAKLKEARH-ESWQQLHE 280 Query: 68 LLSSF-FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR-------FNTYKM 119 + + F T K P+ +++ + L++++KK + + ++M Sbjct: 281 AMKNVSFATAKRKPKDGAYDEQLVEDVKKLRDQVKKEISSITEELFSFQPVTYVRHLHEM 340 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174 + + + + K + ++DF DL +L+ + + Sbjct: 341 KPIVTTIVQMVQRFAHLLQAKKDEKGIVDFSDLEHYCLRILRAPSLEHELKPSEAALYYR 400 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + +L+DE QDT+++Q ++R ++ D +F VGD KQSIY F AEP Sbjct: 401 AQFAEVLVDEYQDTNMVQESILRLVSNDDEATG-------NMFMVGDVKQSIYGFRLAEP 453 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 L++ K G I+L +FRS +IL + +F Sbjct: 454 SLFLQKYNRFTKD----GDGGLRIDLAKNFRSRKEILDGTNFIFRQLMTETVGDMRYDDD 509 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 R E V + + ++E ++ + AR IA I Sbjct: 510 AALRFGAQDYPDKQIPVECVWINEAKEESDEEEQEDV--------TAVQLEARWIAKKIK 561 Query: 355 NMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 ++ + +R + +DI++L R + R + V Sbjct: 562 QLLAEPFFVYDRRLKGERRLMYRDIVILCRSMSSASAMLEEFR----KQNVPVYAELSSG 617 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI- 470 + +++L + I + D+ +L+SP+ E+ + +I + + Sbjct: 618 YFSATEVSIMLSLLKVIDNPYQDIPLAAVLRSPIVGLDEEALARIRLAKKDGAFYEALCA 677 Query: 471 ---QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 + + K + + + E A+ D + G + Sbjct: 678 FVQEPHDDELHEKMKRWLASLSEWRTAARQKPLADLIWQLYRETNFYDYVGGMPGGKQRQ 737 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAK 581 L + + EQ S+ + + +E+ R+ + + VR+MT+H +K Sbjct: 738 ANLRALYDRAKQYEQTSFRGIFRFLRFIERLKEREDDFGAARSLTEQEDVVRMMTIHKSK 797 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVFL + ++ + K +K Sbjct: 798 GLEFPVVFLAGAAKSFNMQDLRSDYVLDKDFGLGMRFVHPTWRASYPTVAQLAIKKKMKW 857 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RTWY 682 E R+LYV +TRA ++L I + KK +++ Sbjct: 858 QLLAEEMRILYVALTRAKEKLYIVCTAKDMEAKKKKWQEVAYTSTWELPAYVIEKAKSYA 917 Query: 683 DMVYDSFHNDE---------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 D + + + I + + +++ A E L+ Sbjct: 918 DWIGYALARHQQGICSSATVLHDPSLWDIHIVPAHELEQEDAQANEHRDIVEAIQQLQPV 977 Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI----------------DTKGKTNLE 771 + +E + S + + Sbjct: 978 AIKSEYEEEVNRRLFWTYTHAPATVLRAKQSVSELKRQRDIYGGHAEQPFRKELVERPRF 1037 Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSI 828 RG ++H ++Q + + + + + + N + ++ + + SI Sbjct: 1038 LQAKMMTPAERGTMMHLVMQHV-DVTKEVTVDAVREQIARMVNGEWLTEEQATVIDVESI 1096 Query: 829 TRLLENPMMTTAMSCDSY-SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 P+ EV + +++ G ID + + + + +YKT Sbjct: 1097 VAFFNTPIGKRMQRATRLEREVPFYLAHEMEGETVVVQGVIDCVFEDEHGLVLIDYKTDR 1156 Query: 888 H--VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938 + + + + QL++Y + ++ + + + + + + Sbjct: 1157 VSWMNDPKQQLKRRYKGQLALYREAIEAIWKREVTETYVYAFDGALLVPMEVD 1209 >gi|166032800|ref|ZP_02235629.1| hypothetical protein DORFOR_02515 [Dorea formicigenerans ATCC 27755] gi|166027157|gb|EDR45914.1| hypothetical protein DORFOR_02515 [Dorea formicigenerans ATCC 27755] Length = 964 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 154/973 (15%), Positives = 314/973 (32%), Gaps = 106/973 (10%) Query: 31 INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL----TQKFTPQKNIIT 86 + E + + L A + R + + + +K Sbjct: 10 LEIDGPAVYEEALKLDAQTIRELLSAKNYNELSGRIQNVEWSRFASCRDKTVSKEKIEAV 69 Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ ++ ++ LKK + + L K + ++ K++ V Sbjct: 70 KDLREQVKEIVSGLKKDYFYQKPEEMAADMQICLPYMEELVGLVKCFSQRFDAKKRQENV 129 Query: 147 LDFEDLIINTNDLLKKRDV----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF D+ +L K+ + + + + I+IDE QD++LIQ ++ S++ Sbjct: 130 IDFSDMEQFALQILAKKTEEGFEPSEVAKEYQDQFREIMIDEYQDSNLIQETILTSIS-- 187 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 +F VGD KQSIYSF + P+ + + I+L Sbjct: 188 -----GVSKGKYNIFMVGDVKQSIYSFRLSRPELFMEKFDTY----DLEKGPKQRIDLHK 238 Query: 263 SFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS ++L V+ +F + D + + G Sbjct: 239 NFRSRKEVLDSVNYIFRQIMVRNLGEIDYDDKAALYVGAEYPENPGC------------E 286 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILV 378 + +D + S + AR IA I +I + GK R + DI++ Sbjct: 287 TEVLVLNTELKKYDRSIKASKQEMEARMIASRIRRLIAEQKVLDKKTGKLRPARYSDIVI 346 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R K I + N I + I L+ R + +++ D+ Sbjct: 347 LTRSVKG---IADIFVQELNREGIPAFSGTKEGYFATQEIGVLLDYLRVLDNRKQDIPLA 403 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-----SKFQHVIKYIHELIH 493 +L S +E ++ I + Y+ ++ + G K +H +++ Sbjct: 404 AVLMSAFCGLNEQEMAVIRSSEAFEIPFYQAVENYLENGENTVICEKLKHCYGKMNDFRE 463 Query: 494 IAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 I + H+ IL Q G + ++ + + +SY L + Sbjct: 464 IVPYTPIHELLRSILTQTGYGQFISAMPGGAQRAANVEMLITKAQAFQSSSYKGLFHFVR 523 Query: 553 ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 +EQ + VR+MT+H +KGLE P+VF+ TG + ++ Sbjct: 524 YIEQLQKFEVDYGEASLEDEQSDTVRVMTIHKSKGLEFPIVFVAGTGKKFNVTDLAGQVI 583 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 I L + ++K + + + K K E R+LYV +TRA ++LII Sbjct: 584 IHARLGVGMDVVDLDRRTKIPSLVKKVIQKEAKLDNLGEELRVLYVALTRAKEKLIITGT 643 Query: 668 SNTSNEK---------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA------- 711 + K +S+ + D + + + + ++ Sbjct: 644 CDNLETKMAKTLTFAQRSSAIQYLDWIIPALAYIPEEIPVTFEEVLLEEIVRDEVETEVS 703 Query: 712 -------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 E R+ +Q + PK +K ++E + Sbjct: 704 GKIQEEILRRWDTSAEYDANVRQTLEEQFAYQYPYPKSHARKMKFTVSELKKMAYQAELD 763 Query: 765 KGK-----------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807 + + RG H++++++ + R+ T Sbjct: 764 DEENALGEVVFEEPEVVPLLPKFMTEEETLTGAPRGTAYHRVMELLDFEKMYDRQTLETE 823 Query: 808 Y--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINC---- 857 + ++ + L++ + + + E I Sbjct: 824 INTFVEQGRMTREMADSVRTADVLGFLDSSVGKRMRTSADCGKLWKEQPFVLGIPGQELY 883 Query: 858 ----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913 ++ G ID + + + +YKT +IE + + AQL Y + L+ Sbjct: 884 KDEPEGDFALVQGIIDVYFEEEDGLVVLDYKTDKV--YKIEELVEKYHAQLDYYGRALEQ 941 Query: 914 SYPNKSLVCLLIY 926 K + ++Y Sbjct: 942 I-TGKKVKEKVLY 953 >gi|229003980|ref|ZP_04161785.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4] gi|228757256|gb|EEM06496.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4] Length = 1182 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 159/1041 (15%), Positives = 326/1041 (31%), Gaps = 144/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K + L+M P L TL A+ Q + Sbjct: 166 LLEDVKFQLETAEKHIRKAIELAMLPDGPAPRIETLQADLVLLGTLSSAAH-QSWTSVYE 224 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KMF 120 + + +K+ +EI K+ L+ K K + + M Sbjct: 225 AMQNVSWQMLKRIKKSDYNEEIIKQVDSLRNKAKDEVKKLQEELFGRKPESFLRDFKDMH 284 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQ 175 + + K ++ K+ ++DF DL +L + + + + Sbjct: 285 PVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERTNDGELRPSPVALQYRN 344 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 345 KFAEVLVDEYQDTNFVQESIIKFVTKDS-------EQEGNLFMVGDVKQSIYRFRLAEPG 397 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293 L + + I+L +FRS ++L + +F + D+ Sbjct: 398 LFLGKYKRFT---PEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADA 454 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 455 ELKLGASYPEGEDVAAELLCIHQSEEEESVEGEDGV--------EVEKAQLEARLMAQRI 506 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R ++ +D ++L+R P I + I V Sbjct: 507 KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYAELAT 562 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 563 GYFEATEVTVMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELAMLRAHEKKGSFYEVMR 622 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K Q + A+ S D + G Sbjct: 623 SFLQGAPLEEEAELHGKLQWFYNLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPAG 682 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA S + VRIMT+ Sbjct: 683 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALSEQEDVVRIMTI 742 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 743 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 802 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ ++ ++ Sbjct: 803 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWLDSREHTDWLLPDYVRAGA 862 Query: 679 RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707 + D + S + + + K Sbjct: 863 SCYLDWIAPSLYRHRDSEMLLELGQGNIPNEIYEYDASWKVEVVDGSTLLAPEPVQEEKQ 922 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +L E K + E S + Sbjct: 923 ELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQSVTEIKRNYQSEDGSDNA 982 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 983 FIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHVNLQKPITLETVQEQIAEMVNKEL 1042 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK----------KDII 863 ++ + + + I + + ++ S EV + ++ + + ++ Sbjct: 1043 LTFEQAEEIAINRIVAFFDTDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQNQSRESVL 1102 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEH----IPYTHIAQLSIYEKILKDSYP 916 + G ID + + + + ++KT P + + + QLS+Y K L+ S Sbjct: 1103 VQGVIDCMIEEEDGVVLIDFKTDTIEGKFPGGFDQAKPILAERYKVQLSLYAKALEKSL- 1161 Query: 917 NKSLV-CLLIYVSEPKVFIIP 936 + + L + + + Sbjct: 1162 HHPVKEKCLYFFDGNHIVHVD 1182 >gi|118444179|ref|YP_877319.1| ATP-dependent nuclease subunit A [Clostridium novyi NT] gi|251764519|sp|A0PY67|ADDA_CLONN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|118134635|gb|ABK61679.1| ATP-dependent nuclease subunit A [Clostridium novyi NT] Length = 1236 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 157/983 (15%), Positives = 322/983 (32%), Gaps = 124/983 (12%) Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRFNTYK 118 + ++ LS + T + N ++ +K D++ K+K + QDE K ++T + Sbjct: 270 TSWDSLYNGLSEVKFGRLKTCR-NCEDKKTQEKVKDIRNKVKKQLQDEIKKKITSYSTKE 328 Query: 119 MFKSTLASL-------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + L Y +AKK+ ++DF D ++L + + Sbjct: 329 IVTDLRNLYPIMKSLCDLVIEFMDRYSKAKKERGIIDFNDFEHFCLEILGHEE----VAL 384 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 K+ Q+ IL+DE QD++ +Q +I S+ +P +F VGD KQSIY F Sbjct: 385 KLRQKYIEILVDEYQDSNYVQEAIINSIARR----HEETGNPINVFMVGDVKQSIYRFRQ 440 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSE 289 A+P+ + K + L +FRS ++L V+ +F EN L Sbjct: 441 AKPEL---FLKKYNSYLEGENAKERKVNLFKNFRSRKEVLDGVNFIFKQIMSENIGELEY 497 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + + + + + + + S + + + AR + Sbjct: 498 GDDEALYLGADFEQYEDKSLVGGPIELNLIEKSKDETKEEESEEEEILSNI--QVEARFV 555 Query: 350 AYTISNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A I+ ++ R ++ +DI+VL+R + + + I Sbjct: 556 AKKINELVNPKIGEPFKVYDNELKAYRNVEYRDIVVLLRSTSNWAPV---FTDEMKENLI 612 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 + + + IK +++L I + D+ + +L+SP+ +F+ +++ I + + Sbjct: 613 PAYADVGNGYFETVEIKTILSLLEIIDNPRQDIPLIAVLRSPIASFTPEELIDIRLENKD 672 Query: 463 TETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 + E K ++ ++ + +F + Sbjct: 673 GDFYGGLLKVASSEDRDDNWILFKRKCNSFLEKLNYWREKSIHMPIDEFIWYLYMETGYY 732 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSAN 568 + G + L + E+ SY L I+ + + N Sbjct: 733 GYVGALAGGMQRQANLKILFQRARQYEKTSYKGLFNFINFINRLKVSSGDMGSAKILGEN 792 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N VRIM++H +KGLE PV+ L G K++ L P + Sbjct: 793 DNVVRIMSIHKSKGLEFPVIILSALGKNFNMQDLNKRILYHDELGFGPDYIDLDKRIIYE 852 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT-------- 680 S L K +K + E R+LYV +TRA ++LI+ N + Sbjct: 853 TVPKSALKKKIKLESLSEEMRILYVALTRAKEKLILTGAVNDIEKSAKKWSYALEGEDYK 912 Query: 681 -----------WYDMVYDSFHNDERVKKIKL----------------------------- 700 + D + + + ++ Sbjct: 913 LSQYQVMTGKNYLDWICPVIMRHKDGEVLRELAGIEIFEKVNLLSDESSWKITTDNISGI 972 Query: 701 --TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 + + + E + +E ++L + K + P + E + Sbjct: 973 LQNDDETNEIILEDIKEIEDIEESSSYYDEINERLNFKYKYIESSKLPTLLTVTELKRMK 1032 Query: 759 PSTIDTK-----------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807 S++ K + +G +H ++Q I E ++ Sbjct: 1033 NSSMYEDYSRDMYTPKLVKKPMFMEKDKKLKGAEKGTAMHAVMQKINYSEELTIEDINRQ 1092 Query: 808 YCTKNAKLWPAKEYKN--LLLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN-------- 856 T K + KE + I ++ + + + + E ++ Sbjct: 1093 METMVEKEFITKEQADSVEAEKILNFFKSNIGKRLLKAENVRRETPFHMELKSTEIYESL 1152 Query: 857 ----CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912 ++I+I G ID + I + +YK+ + + E I + Q+ Y + ++ Sbjct: 1153 PKEIYENENIMIQGIIDCYFEEEDGIVLLDYKSDYFKEGQEEAIIKKYKVQIDYYARAIE 1212 Query: 913 DSYPNKSLVCLLIYVSEPKVFII 935 + L K I Sbjct: 1213 ELTGKVVKEKYLYLFYGDKEVEI 1235 >gi|194014992|ref|ZP_03053609.1| recombination helicase AddA [Bacillus pumilus ATCC 7061] gi|194014018|gb|EDW23583.1| recombination helicase AddA [Bacillus pumilus ATCC 7061] Length = 1232 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 170/1025 (16%), Positives = 340/1025 (33%), Gaps = 136/1025 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFF 73 I +DL + + + +SLS E G P L+Q ++ ++ F L Sbjct: 222 IKEDLSLVLRSCQELLERALSLSKEPGGPAPRAENFIDDLEQVNELIRHQDDFEKLYELL 281 Query: 74 ----LTQKFTPQKNIITQEINKKSPDLK-------EKLKKSQDEFIKIRDRFNTYKMFKS 122 + T + + + +KS D + EKLK + + +M Sbjct: 282 PNVNFKRLKTCKGDEYDPALLEKSTDARNQAKKQLEKLKDEYFMRSPAQHLKSLAEMKPV 341 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS-----AWIRYKIDQEI 177 + L +E AK++ ++DF DL +L ++D Q+ Sbjct: 342 VETLVELVIQFGERFERAKQEKSIVDFSDLEHYCLRILAEQDAEGHLIETEAAKYYQQQF 401 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +L+DE QDT+L+Q +++ ++ K HS+ LF VGD KQSIY F AEP Sbjct: 402 EEVLVDEYQDTNLVQETILKLVS------KGKHSAEGNLFMVGDVKQSIYRFRLAEPMLF 455 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTI 295 L + + Q + + I+L +FRS +D+L + +F + D + Sbjct: 456 LNKYKHFQ---PDGKETGKRIDLNKNFRSRSDVLDSTNFLFKQLMGETVGEIEYDEQAEL 512 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + +S T V ++ AR IA I Sbjct: 513 KLGASYPESKDTTTEMLLVHLDQQEAETGEEREELETV---------QFEARIIAKKIKE 563 Query: 356 MIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 ++ + K+ R +Q +DI++L+R P + + I V N Sbjct: 564 LVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMMEELK----KQGIPVYANLSSGY 619 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467 + + +++L + I + D+ +L+SP+ + E+++ I T + + Sbjct: 620 FEATEVSVILSLLKVIDNPYQDIPLAAVLRSPIVHLDENELALIRTSDKKGTYYDAVKAF 679 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 + + K + + + + + S + + + G + Sbjct: 680 MSVTHSDHPTCKKLERFFQLLRKWRDFSINHSVAELIWEVYRDTQYLDYVGGMPGGKQRQ 739 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + + E+ ++ L + +E+ + S + VR+MT+H++K Sbjct: 740 ANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLGAAKTFSETEDVVRMMTIHSSK 799 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF G + + L + + + K ++ Sbjct: 800 GLEFPVVFTAGLGRNFNMMDLNQSYLLDKELGFGSKYIHPELRISYATLPLVAMKKKMRT 859 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E R+LYV +TRA ++L + + S + + ER + Sbjct: 860 ELLSEELRVLYVALTRAKEKLFLVGSVKNQVKALSKWQNAATGEEWLLPDFERYQSKTYL 919 Query: 702 NSINKDEWIAYEWSTHHPENTPL------------------------------------- 724 + I S+ E + Sbjct: 920 DFIGPALIRHQAMSSVLEETGDIVLSHPSTFTISFTQASDLLKEDMSLEKKEQDEIVQAL 979 Query: 725 -----------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILN--------PSTIDTK 765 E+ ++L + K ++E + PS+I Sbjct: 980 IDGLPVEGYGDADEKVAERLSWKYPYLAASQVGTKQSVSEIKRMKEIQDEYSVPSSIRKA 1039 Query: 766 G----KTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCT--KNAKLWPA 818 +G +H ++Q I E ++ I + L Sbjct: 1040 RATLYDRPAFMKKKTLTAAEQGTAMHTVMQHIPLPSEEPYDESRIGHLLESLQQRDLLTD 1099 Query: 819 KEYKNLLLS-ITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGR 867 ++ +++ I + + D EVS S + + ++I G Sbjct: 1100 EQIQSINQEGIAAFFSTSIGQKLLKADWVKREVSFSLVLPVKEVYSHIDTEGEPVLIQGM 1159 Query: 868 IDQISISQQNIFIFEYKTHHH-----VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ID + + +++ +YKT V + + Q+++Y K ++ N++L Sbjct: 1160 IDCLFETDGKLYLLDYKTDRVQGRYTVDAAEPILKKRYETQIALYAKAVERL-TNRTLEE 1218 Query: 923 LLIYV 927 ++Y Sbjct: 1219 KILYF 1223 >gi|229101824|ref|ZP_04232539.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28] gi|228681617|gb|EEL35779.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28] Length = 1195 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 160/1041 (15%), Positives = 332/1041 (31%), Gaps = 143/1041 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68 + +D+ I K L+M P + ++ + + Sbjct: 179 LLEDVRFQLETAEQHIRKATELAMLPDGPAPRVETLQADAALLGMLLSAARESWTSVYEA 238 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ ++I K+ L+ K K + + M Sbjct: 239 MQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHP 298 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L ++ + + + + Sbjct: 299 VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNK 358 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 359 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 411 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 412 FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 468 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 ++ +S + + ++ + A + AR +A I Sbjct: 469 LKLGASYPEGEDVAAELLCIQQTEEEVLEGEEGTEVEK---------AQLEARLMAQRIK 519 Query: 355 NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 520 AMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 575 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 576 YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 635 Query: 466 -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + + K + + A+ S D + G G Sbjct: 636 FLKDAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 695 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L + + E S+ L + +E+ RA + VRIMT+H Sbjct: 696 QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 755 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 756 KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSPFIDPRKRIKYTTLSQLAIKRK 815 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 816 MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 875 Query: 680 TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708 + D + S + + + K E Sbjct: 876 CYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQE 935 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767 + +EE +L+ + + K + E S + Sbjct: 936 LLEALREKKAVPLESERKEEVYDRLLWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAF 995 Query: 768 ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816 RG +H ++Q + + N +L Sbjct: 996 IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITAETLQEQIAGMVNKELL 1055 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864 ++ + + + + ++ + ++ S EV + + + I++ Sbjct: 1056 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKNGESILV 1115 Query: 865 SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917 G ID + + I + ++KT P + + QLS+Y K L+ S Sbjct: 1116 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL-Q 1174 Query: 918 KSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1175 HPVKEKCLYFFDGNHVVKIEE 1195 >gi|157691776|ref|YP_001486238.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032] gi|251764506|sp|A8FBR1|ADDA_BACP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|157680534|gb|ABV61678.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032] Length = 1234 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 173/1027 (16%), Positives = 344/1027 (33%), Gaps = 138/1027 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFF 73 I +DL + + + +SLS E G P L+Q ++ ++ F L Sbjct: 222 IKEDLSLVLRSCQELLERALSLSKEPGGPAPRAENFIDDLEQVNELIRHQDDFEKLYELL 281 Query: 74 ----LTQKFTPQKNIITQEINKKSPDLK-------EKLKKSQDEFIKIRDRFNTYKMFKS 122 + T + + + +K+ D + EKLK + + +M Sbjct: 282 PNVNFKRLKTCKGDEYDPVLLEKATDARNQAKKQLEKLKDEYFMRSPAQHLKSLAEMKPI 341 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS-----AWIRYKIDQEI 177 + L +E AK++ ++DF DL +L ++D Q+ Sbjct: 342 VETLVELVIQFGERFERAKQEKSIVDFSDLEHYCLRILAEQDAEGHLIETEAAKYYQQQF 401 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +L+DE QDT+L+Q +++ ++ K HSS LF VGD KQSIY F AEP Sbjct: 402 EEVLVDEYQDTNLVQETILKLVS------KGEHSSEGNLFMVGDVKQSIYRFRLAEPMLF 455 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTI 295 L + + Q + + I+L +FRS +D+L + +F E + D + Sbjct: 456 LNKYKHFQ---PDGKETGKRIDLNKNFRSRSDVLDSTNFLFKQLMGETVGEIEYDEQAEL 512 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + +S T V ++ AR IA I Sbjct: 513 KLGASYPESKDTTTEMLLVHLDQQEAETGEEREELETV---------QFEARIIAKKIKE 563 Query: 356 MIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 ++ + K+ R +Q +DI++L+R P + + I V N Sbjct: 564 LVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMMEELK----KQGIPVYANLSSGY 619 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467 + + +++L + I + D+ +L+SPL + E+++ I T + + Sbjct: 620 FEATEVSVILSLLKVIDNPYQDIPLAAVLRSPLVHLDENELALIRTSDKKGTYYDAVKAF 679 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 + + K + + + + + S + + + G + Sbjct: 680 MSVTHSDHPTCKKLERFFQLLRKWRDFSINHSVAELIWEVYRDTQYLDYVGGMPGGKQRQ 739 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + + E+ ++ L + +E+ + S + VR+MT+H++K Sbjct: 740 ANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLGAAKTFSETEDVVRMMTIHSSK 799 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF V G + + L + + + K ++K Sbjct: 800 GLEFPVVFTVGLGRNFNMMDLNQSYLLDKELGFGSKYIHPELRISYATLPLVAMKKKMRK 859 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E R+LYV +TRA ++L + + S + + ER + Sbjct: 860 ELLSEELRVLYVALTRAKEKLFLVGSVKNQVKALSKWQNAATGEEWLLPDFERYQSKTYL 919 Query: 702 NSINKDEWIAYEWSTHHPENTPL------------------------------------- 724 + I S+ E + Sbjct: 920 DFIGPALIRHQAMSSVLEETGDVVLSHPSTFTISFTQASDLLKEDMSLEKKEQDEIVQAL 979 Query: 725 -----------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILN--------PSTIDTK 765 E+ ++L + K ++E + PS+I Sbjct: 980 MDGLPVEGYGDADEKVAERLSWKYPYLAASQVGTKQSVSEIKRMKEIQDEYSVPSSIRKA 1039 Query: 766 G----KTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCT--KNAKLWPA 818 +G +H ++Q I E ++ I + L Sbjct: 1040 RATLYDRPAFMKKKTLTAAEQGTAMHTVMQHIPLPSEEPYDESRIGHLLDSLQQRDLLTD 1099 Query: 819 KEYKNLLLS-ITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGR 867 ++ +++ I + + D EVS S + + ++I G Sbjct: 1100 EQVQSINQEGIAAFFSTSIGQKLLKADWVKREVSFSMVLPVKEVYSHIDTEGEPVLIQGM 1159 Query: 868 IDQISISQQNIFIFEYKTHHH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 ID + + +++ +YKT + + + + Q+++Y K ++ N++L Sbjct: 1160 IDCLFETDGKLYLLDYKTDRVQGRYTGGIDAAVPILKKRYETQIALYAKAVERL-TNRTL 1218 Query: 921 VCLLIYV 927 ++Y Sbjct: 1219 EEKILYF 1225 >gi|229095725|ref|ZP_04226704.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29] gi|228687558|gb|EEL41457.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29] Length = 1195 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 161/1042 (15%), Positives = 331/1042 (31%), Gaps = 145/1042 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68 + +D+ I K L+M P + ++ + + Sbjct: 179 LLEDVRFQLETAEQHIRKATELAMLPDGPAPRVETLQVDAALLGMLSSAARESWTSVYEA 238 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ +++ K+ L+ K K + + M Sbjct: 239 MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHP 298 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L ++ + + + + Sbjct: 299 VLEKLVKLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEVKPSAVALQYRNK 358 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 359 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 411 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294 L + + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 412 FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 468 Query: 295 IRHRSSRI-GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S G+ +L ++ + + A + AR +A I Sbjct: 469 LKLGASYPIGEDVAAELLCIQQTEEEVLEGEEGTEV----------EKAQLEARLMAQRI 518 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R I V + Sbjct: 519 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 574 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 575 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 634 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 635 SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 694 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 695 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 754 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 755 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 814 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 +K E R+LYV +TRA ++LI+ +N++ ++ Sbjct: 815 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 874 Query: 679 RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707 + D + S + + K Sbjct: 875 SCYLDWIAPSLYRHRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 934 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + +EE +LM + + K + E S + Sbjct: 935 ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 994 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815 RG +H ++Q + + N +L Sbjct: 995 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHTVMQHVDLKKPITVEVLQEQIAGMVNKEL 1054 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863 ++ + + + + ++ + ++ S EV + ++ + I+ Sbjct: 1055 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGNSGESIL 1114 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916 + G ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1115 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1173 Query: 917 NKSLV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1174 QHPVKEKCLYFFDGNHVVNIEE 1195 >gi|46908500|ref|YP_014889.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b F2365] gi|81565413|sp|Q71X99|ADDA_LISMF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|46881772|gb|AAT05066.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes serotype 4b str. F2365] Length = 1235 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 157/1025 (15%), Positives = 341/1025 (33%), Gaps = 132/1025 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + + + E P L + + + + S + Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + S + T + K+ +E +++ ++ KK R+ N + Sbjct: 285 AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K ++ E K++ VLDF DL +L K + ++ + ++ Sbjct: 345 KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T N+ LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ +G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 +S +L + +S+ + S + + +R IA I M Sbjct: 515 GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566 Query: 357 IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + I + D+ +L+SP+ +E+++ ++ + + + Y Sbjct: 623 ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K I+ ++ ++ + I + G + L Sbjct: 683 DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + K E + + + + Sbjct: 923 GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLENIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 IPVKSPYKDEIQRYMNYEYQNEEATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + G +H L+Q + + +++ + + + + K + Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101 Query: 825 -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873 + + E+ + T + EV S + + ++I G +D + Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIE 1161 Query: 874 SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 ++ I + +YKT + + + Q+ +Y K ++ K L + Sbjct: 1162 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1221 Query: 928 SEPKV 932 + Sbjct: 1222 DGQHI 1226 >gi|254825170|ref|ZP_05230171.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194] gi|255519745|ref|ZP_05386982.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL J1-175] gi|293594413|gb|EFG02174.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194] Length = 1235 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 157/1025 (15%), Positives = 341/1025 (33%), Gaps = 132/1025 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + + + E P L + + + + S + Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + S + T + K+ +E +++ ++ KK R+ N + Sbjct: 285 AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K ++ E K++ VLDF DL +L K + ++ + ++ Sbjct: 345 KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T N+ LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ +G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 +S +L + +S+ + S + + +R IA I M Sbjct: 515 GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566 Query: 357 IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + I + D+ +L+SP+ +E+++ ++ + + + Y Sbjct: 623 ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K I+ ++ ++ + I + G + L Sbjct: 683 DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + K E + + + + Sbjct: 923 GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 IPVKSPYKDEIQRYMNYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + G +H L+Q + + +++ + + + + K + Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101 Query: 825 -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873 + + E+ + T + EV S + + ++I G +D + Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIE 1161 Query: 874 SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 ++ I + +YKT + + + Q+ +Y K ++ K L + Sbjct: 1162 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1221 Query: 928 SEPKV 932 + Sbjct: 1222 DGQHI 1226 >gi|239826206|ref|YP_002948830.1| recombination helicase AddA [Geobacillus sp. WCH70] gi|239806499|gb|ACS23564.1| recombination helicase AddA [Geobacillus sp. WCH70] Length = 1244 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 143/1031 (13%), Positives = 333/1031 (32%), Gaps = 129/1031 (12%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + + + L + + + + L+ L+ + +E + + S Sbjct: 236 AAKRLIARALQLAHLPGGPLPRAENYRD------DLQLIAHLEALLD-RSWDELYEAMKS 288 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS---TL 124 L++ + + + ++ +++ L+++ L+ +D +R M + Sbjct: 289 LSLSRLKSCRGDEYDPQLVEEAKSLRDQAKKKLESLRDNVFSLRPTTWLRHMREMKPVVE 348 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWIRYKIDQEIN 178 + L K ++ K++ ++DF DL +L+ D + + + Sbjct: 349 TIVRLVKQFTEMFQARKREKGIVDFSDLEHYCLQILRHPDSTDGQWLPSDAALDYRAQFV 408 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QDT+++Q ++R +T+ + LF VGD KQSIY F AEP L Sbjct: 409 EVLVDEYQDTNMVQEAILRLVTK-------GNEHTGNLFMVGDVKQSIYRFRLAEPMLFL 461 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + + Q I+L +FRS A+IL + +F + + + Sbjct: 462 SKYKRFTAD---GKQSGMKIDLSNNFRSRAEILHGTNFIFKQIMSETVGEMEYDEAAELK 518 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + Q +++ + + ++ D + A ++A++I I + Sbjct: 519 YGAVDYPDNEQAVPELIIIDRNSKDDEETGEFDTNDLAAAQLEARMMAKKI-KEIVSEPF 577 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + R +DI++L+R I R I V + I Sbjct: 578 HVYDRKAKRMRRAMYRDIVILLRSMTAATQIMEEFRA----QGIPVYADLSSGYFQATEI 633 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY--------I 470 +++L + I + D+ +L+SP+ +E+++ I + Sbjct: 634 SIMLSLLKVIDNPYQDIPLASVLRSPIVGLNENELALIRIHEKKGTFYEAMVSFLTKTVD 693 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 K K + + + +A+ S D + + G + L Sbjct: 694 DKEEAALQQKLRLFYEQLKHWRTMARQRSLADIIWQLYRDTQFYDFVGGLPGGKQRQANL 753 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E S+ L + +E+ R+ + VRIMT+H++KGLE Sbjct: 754 RALYDRARQYETTSFRGLFRFLRFIERLQNRGDDLGAARSLGEQEDVVRIMTIHSSKGLE 813 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 P+VF+ + + + L + + + + Sbjct: 814 FPIVFIAGLSRPFNTRDLYESYLLDKELGFAARFVDPKLRISYPTLPQIAIKQKKRLDFL 873 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND------------ 692 E R+LYV +TRA ++L + + ++ + ++ +D Sbjct: 874 AEEMRILYVALTRAKEKLYLIAAVKDAEKEVAKWKSTAMEEEWLLPDDVRASARCYLDWI 933 Query: 693 --------------------------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 + +++ + + T L+R Sbjct: 934 GRALIRHRDGRNFGDLSYVCEKIASHPSIWHMEVIPASQLYDVDKEAEQMDEQIITALKR 993 Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------------------- 766 E + + ++ +L S E + T+ Sbjct: 994 GERVPNAGEWKEEVDRLLSWEYAYEKEMLVRAKQTVSELKRHREIFGENADRMPLHSFST 1053 Query: 767 ---KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYK 822 + + +G +H ++Q + + +L ++ + Sbjct: 1054 PLFERPMFMREKTLTPAEKGTAMHIVMQQVDLTAPITEETVREQIAKLVQMELLTHEQAE 1113 Query: 823 NL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGRIDQI 871 + + S+ + + + D Y EV S + ++ ++ G ID + Sbjct: 1114 AIDISSVVAFFDTEIGKRLRAADEVYREVPFSLALPAKEVYEDGVGEERKALVQGVIDCL 1173 Query: 872 SISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 ++ + + ++KT + + I + Q+ +Y + ++ + C L Sbjct: 1174 FADEKGLVLIDFKTDTVTNRFAGGWHEAKQVIISRYKTQMQLYRRAVEQIWKINVDECYL 1233 Query: 925 IYVSEPKVFII 935 + I Sbjct: 1234 YLFDGSHLISI 1244 >gi|254931621|ref|ZP_05264980.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262] gi|293583174|gb|EFF95206.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262] Length = 1235 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 157/1025 (15%), Positives = 341/1025 (33%), Gaps = 132/1025 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + + + E P L + + + + S + Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + S + T + K+ +E +++ ++ KK R+ N + Sbjct: 285 AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K ++ E K++ VLDF DL +L K + ++ + ++ Sbjct: 345 KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T N+ LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ +G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 +S +L + +S+ + S + + +R IA I M Sbjct: 515 GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566 Query: 357 IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + I + D+ +L+SP+ +E+++ ++ + + + Y Sbjct: 623 ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K I+ ++ ++ + I + G + L Sbjct: 683 DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + K E + + + + Sbjct: 923 GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 IPVKSPYKDEIQRYMNYEYQNEEATKIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + G +H L+Q + + +++ + + + + K + Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101 Query: 825 -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873 + + E+ + T + EV S + + ++I G +D + Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIE 1161 Query: 874 SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 ++ I + +YKT + + + Q+ +Y K ++ K L + Sbjct: 1162 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1221 Query: 928 SEPKV 932 + Sbjct: 1222 DGQHI 1226 >gi|226224875|ref|YP_002758982.1| ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes Clip81459] gi|225877337|emb|CAS06051.1| Putative ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1235 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 157/1025 (15%), Positives = 341/1025 (33%), Gaps = 132/1025 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + + + E P L + + + + S + Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + S + T + K+ +E +++ ++ KK R+ N + Sbjct: 285 AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K ++ E K++ VLDF DL +L K + ++ + ++ Sbjct: 345 KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T N+ LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ +G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 +S +L + +S+ + S + + +R IA I M Sbjct: 515 GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566 Query: 357 IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + I + D+ +L+SP+ +E+++ ++ + + + Y Sbjct: 623 ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K I+ ++ ++ + I + G + L Sbjct: 683 DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + K E + + + + Sbjct: 923 GNATIRHSNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 IPVKSPYKDEIQRYMNYEYQNEEATKIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + G +H L+Q + + +++ + + + + K + Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101 Query: 825 -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873 + + E+ + T + EV S + + ++I G +D + Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIE 1161 Query: 874 SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 ++ I + +YKT + + + Q+ +Y K ++ K L + Sbjct: 1162 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1221 Query: 928 SEPKV 932 + Sbjct: 1222 DGQHI 1226 >gi|228996315|ref|ZP_04155959.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17] gi|228763419|gb|EEM12322.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17] Length = 1182 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 157/1042 (15%), Positives = 327/1042 (31%), Gaps = 146/1042 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66 + +D+ I K + L+M P + +TLQ ++ Q + Sbjct: 166 LLEDVKFQLETAEKHIRKAIELAMLPDGPAP--RIETLQADLVLLGTLSSAAYQSWTSVY 223 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KM 119 + + +K+ +EI K+ L+ K K + + M Sbjct: 224 EAMQNVSWQTLKRIKKSDYNEEIIKQVDSLRNKAKDEVKKLQEELFGRKPESFLRDFKDM 283 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKID 174 + + K ++ K+ ++DF DL +L + + + + Sbjct: 284 HPVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERTNDGELRPSPVALQYR 343 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 344 NKFAEVLVDEYQDTNFVQESIIKFVTKDS-------EQEGNLFMVGDVKQSIYRFRLAEP 396 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292 L + + I+L +FRS ++L + +F + D+ Sbjct: 397 GLFLGKYKRFT---PEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDAD 453 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 ++ +S + + ++ + A + AR +A Sbjct: 454 AELKLGASYPEGEDVAAELLCIHQSEGEESVEGEDGV--------EVEKAQLEARLMAQR 505 Query: 353 ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I M+ + + K R ++ +D ++L+R P I + I V Sbjct: 506 IKAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYAELA 561 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 562 TGYFEATEVTVMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELAMLRAHEKKGSFYEVM 621 Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521 + + K Q + A+ S D + Sbjct: 622 RSFLQGAPLEEEAELHGKLQWFYNLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPA 681 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576 G + L + + E S+ L + +E+ RA S + VRIMT Sbjct: 682 GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALSEQEDVVRIMT 741 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE PVVF+ G + + +K+ + + K + Sbjct: 742 IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 801 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677 + +K E R+LYV +TRA ++LI+ ++ ++ Sbjct: 802 RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWLDSREHTDWLLPDYVRAG 861 Query: 678 QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706 + D + S + + + K Sbjct: 862 ASCYLDWIAPSLYRHRDSEMLLELGQENIPNEIYEYDASWKVEVVDGSTLLAPEPVQEEK 921 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 E + +EE +L E K + E S + Sbjct: 922 QELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQSVTEIKRNYQSEDGSDN 981 Query: 767 K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814 +G +H ++Q + + N + Sbjct: 982 AFIKKLRTPIKTRPRFMEKKGLTYAEQGTAVHAVMQHVNLQKPITLETVQEQIAEMVNKE 1041 Query: 815 LWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK----------KDI 862 L ++ + + + I + + ++ S EV + ++ + + + Sbjct: 1042 LLTFEQAEEIAIDRIVAFFDTDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQNQSRESV 1101 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEH----IPYTHIAQLSIYEKILKDSY 915 ++ G ID + + + + ++KT P + + + QLS+Y K L+ S Sbjct: 1102 LVQGVIDCMIEEEDGVVLIDFKTDTIEGKFPGGFDQAKPILAERYKVQLSLYAKALEKSL 1161 Query: 916 PNKSLV-CLLIYVSEPKVFIIP 936 + + L + + + Sbjct: 1162 -HHPVKEKCLYFFDGNHIVHVD 1182 >gi|253682207|ref|ZP_04863004.1| recombination helicase AddA [Clostridium botulinum D str. 1873] gi|253561919|gb|EES91371.1| recombination helicase AddA [Clostridium botulinum D str. 1873] Length = 1232 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 159/999 (15%), Positives = 319/999 (31%), Gaps = 125/999 (12%) Query: 42 GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101 L L S + LS + T + ++ +K D++ K+K Sbjct: 253 DFKNELAMIDDLI-LSAKSSWNSLYDNLSKIKFGRLKTCRGCE-DKKTQEKVKDIRNKVK 310 Query: 102 -KSQDEFIKIRDRFN-------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 + QD+ K +N ++ + L Y EAKK+ ++DF D Sbjct: 311 KQLQDDIKKKVISYNDDEIISDLINLYPIMKSLTDLVLKFMNRYAEAKKERGIIDFNDFE 370 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 ++L + + K+ Q IL+DE QD++ +Q +I ++ Sbjct: 371 HFCLEILGNEE----VSLKLKQRYVEILVDEYQDSNYVQEAIINAIARQ----DEKTGKY 422 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIY F A+P+ R K + L +FRS ++L Sbjct: 423 NNVFMVGDVKQSIYRFRQAKPEL---FLRKYNSYLEEDSTKERKVNLFKNFRSRKEVLDG 479 Query: 274 VDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 V+ +F N L D + + + V + + + Sbjct: 480 VNFIFKQIMSKNIGELEYDDNEALNLGADFQE---YREDKSLVGGAIELNLMEKIKDDIE 536 Query: 332 YFDSLPQESSASILARRIAYTISNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRK 384 + S+ + AR +A I+ ++ + R ++ +DI++L+R Sbjct: 537 GQEDDEILSNIQVEARLVAKRINELVNPTIGEPFKVYDNDLKEYRNVEYRDIVILLRSTS 596 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + I + + + IK +++L I + D+ + +L+SP Sbjct: 597 SWAPV---FMDELKEKLIPAYADVGNGYFESVEIKTMLSLLEIIDNPRQDIPLIAVLRSP 653 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH-------VIKYIHELIHIAQF 497 + +F+ +++ I + + + YE I K K +K ++ + Sbjct: 654 IASFTPEELIDIRLENKDGD-FYEGILKILKSEDEKLHGLKKKCNIFLKKLNLWREKSIH 712 Query: 498 CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-- 554 +F + + G + L + E+ SY L I+ + Sbjct: 713 IPIDEFIWYLYMDTGYYGYVGALSGGMQRQANLKILFQRARQYEKTSYKGLFNFITFINR 772 Query: 555 ---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 + N N VRIM++H +KGLE PVV L G +++ Sbjct: 773 LKVSSGDMGSAKILGENDNVVRIMSIHKSKGLEFPVVILSALGKNFNMQDLNRRILYHDE 832 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L P + + + L K +K + E R+LYV +TRA ++LI+ ++ Sbjct: 833 LGFGPDYINLEKRISYETVLKAALKKKIKLESLSEEMRILYVALTRAKEKLIMTGFVSSI 892 Query: 672 NEKKSNQRT-------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 + + D + + + ++ I E + Sbjct: 893 EKSSKQWGYSLQGDNYKLSEYQVLTGKNYLDWICPVIMRHKDGEILREFAGIESFEKVNL 952 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK----------------------LFSPIKND 750 + E ++ E I P Sbjct: 953 IEDESKWKIKVNNISEILQNNNKEDIILDHIEEIENIEETSSFYDEINSRLNFKYPYIES 1012 Query: 751 INEPYILNPSTI-------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 P +L + + K + ++G +H ++Q Sbjct: 1013 SKLPTLLTVTELKRMKNASMYEDYAKDMYTPKLIKKPSFMEKDKKLTGADKGTAMHAVMQ 1072 Query: 792 VIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSE 848 + E + + ++ +++ I + + + + E Sbjct: 1073 KLDYKKELNIEEVKVQMENMVQKEFITKEQIESVDPSKILNFFNTSIGKRFLKAKEVERE 1132 Query: 849 VSVSGKIN------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 V ++ + I+I G ID + I + +YK+ + E + I Sbjct: 1133 VPFHIQLKSTEIFEGLSKDIYSDEHIMIQGIIDCYFEEEDGIVLVDYKSDYFKEGEEQSI 1192 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + AQ+ Y + +++ K L K I Sbjct: 1193 IKKYKAQIEYYTRAIEELTNKKVKEKYLYLFYADKEVEI 1231 >gi|295109449|emb|CBL23402.1| recombination helicase AddA, Firmicutes type [Ruminococcus obeum A2-162] Length = 1241 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 131/1033 (12%) Query: 11 ESYELIYKDLWPLPYFQVSDINKY---VSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 E I +++ PYF + + + + E +L A + + + Sbjct: 232 ERATHICREI-EGPYFYETALESDSLLLKEAKERAAKRDYNGMTSLLAAHKYARLSAKKD 290 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L +K +++ L ++L++ + K Sbjct: 291 L--------NVDEEKKKQVKDLRDTEKHLWKELEEHYFSQSEEHILEALKYCRKPMEGLA 342 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKIDQEINHILID 183 + A + K++ VLDF D+ ++L + + + ++ +++D Sbjct: 343 RITLQFKAAFAAKKREKNVLDFSDMEHFALEILMKKEGEDIIPSTAAKELSARYEEVMVD 402 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QD++L+Q + ++ + +F VGD KQSIY F A P+ + + Sbjct: 403 EYQDSNLVQEMITNLVS-------GWADGRKNIFMVGDVKQSIYRFRLARPELFMEKYHS 455 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSR 301 K ++L +FRS ++L+ V+ +F E+ G++ D + +S Sbjct: 456 YS----LEDAKEQRVDLYKNFRSRREVLSSVNYIFRQIMGEDIGGITYDDENALYTGASF 511 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + V +++ + ++ + A IA I M+G + Sbjct: 512 PEKEHIVGEKTNGPGNTTEVLLIEKDGEELSEEENGNQTVQELEALAIAQRIRKMVGNEE 571 Query: 362 IFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + G+ R ++ DI++L+R + I V R + Sbjct: 572 VLDKETGRYRKVEYGDIVILLRS---ATGWAEPFSQVLTSKGIPVYSASRTGYFSAQEVV 628 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET----------ETVYEY 469 L+ R + D+ +L SP+ + ++ + ++ E E E Sbjct: 629 TLLNYLRVCDNPLQDIPLTGVLHSPIVGCTVQELAILKSRCPEGMLYESLCAYCEAEREI 688 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 + + C K + E+ +++ + H+ IL + G + Sbjct: 689 LTEEEKCLQEKLCAFQAQLEEMRNLSAYTPVHELILRILAKTGYADYVKAVPGGAQRGAN 748 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGL 583 L + + E+ SY L + +E + A V+IMT+H +KGL Sbjct: 749 LHMLVEKAMDYEKTSYRGLFNFVRYIEKLQKYEVDFGEVNLADAGSGAVQIMTIHKSKGL 808 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVF G Q + I P + + + + + + L++ + Sbjct: 809 EFPVVFAAGMGKQFNFQDINSRFLIHPDMGFGVDVILPEKRLILSAVHKQIIRRQLQRES 868 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E R+LYV +TRA ++LII + + D R K + Sbjct: 869 LGEELRVLYVALTRAKEKLIITGCIGKLPDVCKALSVYMDHEEPLLPIAVRGKAKTYWSY 928 Query: 704 INKDEWIAYEWSTHHPENTPLEREETI--------------------------------- 730 I E ER + Sbjct: 929 ILPALARHPAMQGLLHEYGITERPAAVCEKENAQFIVHKVTVTELVQGEILGQTDTQMQE 988 Query: 731 -------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------DTKGKTNL 770 +++ + + P N P ++ S + + + L Sbjct: 989 KLLKEWDSNRIYDEEIHEFLEKRFSYQYPHAYLRNLPVKVSVSELKKRSWHGENDREEAL 1048 Query: 771 ESLL--------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAK 814 S + + RG H+L++ + + T+ K Sbjct: 1049 FSEPDIVPLVPDFVSGGNEEYKGAARGTAYHRLMECLDYMSVDSESQIHKQITALTEAKK 1108 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAM----SCDSYSEVSVSGKINC--------PKKDI 862 + + + I L + + + Y E + ++ + Sbjct: 1109 MAYEEAQCIRIQDIMTFLHSEIGQRMKKAFEADQLYREQPFVLAQSMKNIEKDWNGEETV 1168 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G ID I + I + +YKT E +H+ + QL Y + L+ K Sbjct: 1169 LVQGIIDAYFIEDEEIVLVDYKTDRVRKGEEQHLIDLYHTQLEDYAQALERMLQKKVKET 1228 Query: 923 LLIYVSEPKVFII 935 + + K+ + Sbjct: 1229 YIYSFALGKMIPV 1241 >gi|167748814|ref|ZP_02420941.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662] gi|167651784|gb|EDR95913.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662] Length = 1186 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 172/993 (17%), Positives = 337/993 (33%), Gaps = 110/993 (11%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERF 66 I KD + + + K + ETG P L+ + ++ A + E F Sbjct: 213 EILKDAKAVAESACAIMKKAKEAASETGGPYFYLPTLTADLETMEEIRSAESYKDFGELF 272 Query: 67 SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + L + +++ KK+ DL + ++ S + ++ Sbjct: 273 LSFTKPRLNGRKKKDDIIDKDLQEYCKDLRKKAYDLIDSIRSSYFYKPESEIIRQIRRVR 332 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK------RDVSAWIRYKID 174 + + L + + E KK + +LDF DL +LL + + I + Sbjct: 333 QPMEGFIGLTEKFYHRFMERKKLDNLLDFSDLEHLALELLTSGFSEDGTPIVSGIAKEKA 392 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + + I IDE QD++ +Q ++RS++ +F VGD KQSIYSF A P Sbjct: 393 EYFHEIYIDEYQDSNFLQDAILRSVSGQSL-------GEHNIFMVGDVKQSIYSFRLARP 445 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + + + +K G+ +IEL +FRS ++L V+ +F +A + + T Sbjct: 446 ELFIEKYHGFKKD----GKNSKLIELRNNFRSRREVLFTVNDIFYQIMHASLGNIEYTED 501 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 + S + N + + ++ +E + AR IA I Sbjct: 502 VALVPSFP-----------YEESGGAGGNAELLLVSRDWNDASEEDKDVLEARMIADRIK 550 Query: 355 NMIGTDTI--------FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 M+ + R + +DI++L+R K + + D I + Sbjct: 551 KMVDGPEPQMVLDYDEEGSEVYRKAEYRDIVILLRSVKGNA---EKIQEVLMDAGIPAIS 607 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 + + D + ++ +++L + + D+ L+SP+ + +D+ K + + Sbjct: 608 SSQSGYFDTVEVRTVLSLLTVVDNLYADIEMAAFLRSPMIGMTGEDLAK--LKLGGKKKY 665 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEV 525 A K + + L F S + L G + Sbjct: 666 MYDCLTEAAGKDEKADTALSVLKRLREAKTFLSLRELLWLAFDLTGYYHYVGAMPQGAKR 725 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTA 580 L E + Y + I +EQ AN N V I ++H + Sbjct: 726 QGNLLMLAEQAKTYEASRYKGVFHFIRYMEQCREYQMDFGEANTLGGNENLVTITSIHKS 785 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P+VFL T + + P P + ++K + + + L Sbjct: 786 KGLEYPIVFLAKTHKKFNLRDTGGSLLFHPDYFIGPDLVNIRQRTKEPTIMKGMISRQLV 845 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----------SNQRTWYDMVYDSFH 690 K + E R+LYV +TRA ++LI+ + ++ + R++ + + + Sbjct: 846 KDSLGEELRVLYVALTRAKEKLIMTGVQGSRHQPGGKGPVSYVDLLSARSYLEWLLMAAG 905 Query: 691 NDERVKKI--KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 N E L+ ++++ + E++ + Q + + Sbjct: 906 NMEESPFEIHFLSEEDVALSSAEEVFTSYRDRGLLTDELESMAGSEEAQGMREAFAYRYP 965 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLS--------------------DNQTFNRGLIIHK 788 D L S + K + + +RG +HK Sbjct: 966 YDKERDGRLKYSVSEIKRMSQAAEPEESYKPEPQKERLYPKFLKEKKEASPASRGTAVHK 1025 Query: 789 LLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845 +L+++ + I+ + + K+ E I L + + Sbjct: 1026 VLELMDFSLDYTPELLEEQISRW-SSEEKIEEGMEKLIPREDILAFLNSDLGLRIKKAAG 1084 Query: 846 YSEVSVSGKINCPK------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 E + +++ G ID + + + +YKT P E Sbjct: 1085 RKEQYKEAQFVMGVKFSEMEPEAKSRDYVVVQGIIDLYFKEEGELVLVDYKTDRVKPGEE 1144 Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 E + + AQL Y+K L+ K + IY Sbjct: 1145 EVLAERYRAQLQYYKKALEQM-EQKKVKECYIY 1176 >gi|219853971|ref|YP_002471093.1| hypothetical protein CKR_0628 [Clostridium kluyveri NBRC 12016] gi|251764517|sp|B9DZK4|ADDA_CLOK1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219567695|dbj|BAH05679.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1238 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 319/1019 (31%), Gaps = 147/1019 (14%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 +E +++ + +E + + + + + + K+ + ++ Sbjct: 246 LEHYLEPFKSDIESIDKLINITTWDEIRDEFIKLSFNKLPSKRTDPLVKSYKDKARNTRD 305 Query: 99 K----LKKSQDEFIKIRDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 + L +++ I D +++ + L Y K + ++DF D+ Sbjct: 306 EVKKKLISIREDIILCTDDIYENFKEVYPLMKSLTFLVMDFYEKYHNKKSERNMIDFNDI 365 Query: 153 IINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 ++L +D + + + + I IDE QD++ +Q ++ ++ Sbjct: 366 EHFCLEILTSKDKNGDIIPSEAALEYREYFEEIFIDEYQDSNEVQEVIMNMISRKNIYA- 424 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 LF VGD KQSIY F A P+ L + ++ G K I+L +FRS Sbjct: 425 -------NLFMVGDVKQSIYRFRQARPELFLEKYNSYDEK---EGSKNRKIKLSENFRSR 474 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT------IRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 +I+ ++ +F + D R+ G V+L + Sbjct: 475 KEIIDAINYIFKQIMCREVGELDYGEEECLKSSARYEPFEGNCGGDVELHVVDKKE---- 530 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG--------TDTIFSNGKKRVIQA 373 E+ + + S+ AR +A I+ ++ R I Sbjct: 531 ----NENKLEDENEEELLDAISVEARLVASKINELVNPSLDQYSFKVYDKEIDNYRSIMY 586 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 KDI++L+R T N+ I V + + IK +++L + I + Sbjct: 587 KDIVILMRA---TQNWAPAFVEELNNSGIPVFADTSVGYFQAIEIKTIISLLQIIDNPLQ 643 Query: 434 DLSFVCMLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYIQKFANCGISK 480 D+ F+ +L+SP+ FS +D+ + + + + ++ K Sbjct: 644 DIPFIALLRSPIGGFSPEDLIDLRVVNREISFYEILKAIKEHSLELKYSLEHIDERLEYK 703 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN 539 + + +F I G + L + Sbjct: 704 VEQFFNKLCLWRRKVIHMPIDEFIWHIYIETGYYGFVGAMPGGIQRQANLRMLFERAKQY 763 Query: 540 EQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + SY L I+ + + N N VRIM++H +KGLE PV+ L G Sbjct: 764 KNISYKGLFNFINFINKLKSSSTDMGNAKILGENENVVRIMSIHKSKGLEFPVIILSGAG 823 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + K + L P + L + LK T E R+LYV Sbjct: 824 KRFNLTDINKSVLFHKELGLGPEYVNSERHISYPTIVKQVLKRKLKMETLSEEMRILYVA 883 Query: 655 MTRASDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDSFHNDERV 695 TRA ++LII + R + D + + Sbjct: 884 FTRAKEKLIITGTVDNIENTFQRWCEAAYCEEDKLPEYSLINSRNFLDWIGPAVARHPCG 943 Query: 696 KKIKLTNSIN---------KDEWIAYEWSTHHPENTP--------------LEREETIKQ 732 + I+ +W + +S + ++T LE + + Sbjct: 944 EIIRKVCPFEYNLNLITGDDSKWKVFVYSKDNFKSTLDENIDEDIIGKIKSLELDNNKEI 1003 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT------------------KGKTNLESLL 774 +E + + S + K Sbjct: 1004 YKNEVYRRLNWTYKYEQSSKIAAKFSVSELKRRFKLIDTENGIEFMEPIYLKKPAFLRES 1063 Query: 775 SDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITR 830 RG+++H ++Q I + K + + E K++ + I + Sbjct: 1064 KGLTPSERGIVMHLVMQHIDIDKVGSYEQIKEQVDKLVFRE--FITEAEAKSISVYKIIK 1121 Query: 831 LLENPMMTTAM-SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQISISQQN 877 + + S + Y EV +I + ++I G ID Sbjct: 1122 FFNSEIGIRMKKSNNVYREVPFYMEIESTELYKQLPQHIYRDEKVLIQGIIDCYFEENNE 1181 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + + +YKT H +I+ I + Q+ Y + L+ K L S+ + + Sbjct: 1182 LILVDYKTDHV--GDIDSIKEKYQVQIYYYGRALEKLTGKKVKKKYLYLFSKDYILDLS 1238 >gi|153953342|ref|YP_001394107.1| ATP-dependent exonuclease [Clostridium kluyveri DSM 555] gi|251764518|sp|A5N628|ADDA_CLOK5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|146346223|gb|EDK32759.1| Predicted ATP-dependent exonuclease [Clostridium kluyveri DSM 555] Length = 1235 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 319/1019 (31%), Gaps = 147/1019 (14%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 +E +++ + +E + + + + + + K+ + ++ Sbjct: 243 LEHYLEPFKSDIESIDKLINITTWDEIRDEFIKLSFNKLPSKRTDPLVKSYKDKARNTRD 302 Query: 99 K----LKKSQDEFIKIRDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 + L +++ I D +++ + L Y K + ++DF D+ Sbjct: 303 EVKKKLISIREDIILCTDDIYENFKEVYPLMKSLTFLVMDFYEKYHNKKSERNMIDFNDI 362 Query: 153 IINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 ++L +D + + + + I IDE QD++ +Q ++ ++ Sbjct: 363 EHFCLEILTSKDKNGDIIPSEAALEYREYFEEIFIDEYQDSNEVQEVIMNMISRKNIYA- 421 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 LF VGD KQSIY F A P+ L + ++ G K I+L +FRS Sbjct: 422 -------NLFMVGDVKQSIYRFRQARPELFLEKYNSYDEK---EGSKNRKIKLSENFRSR 471 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT------IRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 +I+ ++ +F + D R+ G V+L + Sbjct: 472 KEIIDAINYIFKQIMCREVGELDYGEEECLKSSARYEPFEGNCGGDVELHVVDKKE---- 527 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG--------TDTIFSNGKKRVIQA 373 E+ + + S+ AR +A I+ ++ R I Sbjct: 528 ----NENKLEDENEEELLDAISVEARLVASKINELVNPSLDQYSFKVYDKEIDNYRSIMY 583 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 KDI++L+R T N+ I V + + IK +++L + I + Sbjct: 584 KDIVILMRA---TQNWAPAFVEELNNSGIPVFADTSVGYFQAIEIKTIISLLQIIDNPLQ 640 Query: 434 DLSFVCMLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYIQKFANCGISK 480 D+ F+ +L+SP+ FS +D+ + + + + ++ K Sbjct: 641 DIPFIALLRSPIGGFSPEDLIDLRVVNREISFYEILKAIKEHSLELKYSLEHIDERLEYK 700 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN 539 + + +F I G + L + Sbjct: 701 VEQFFNKLCLWRRKVIHMPIDEFIWHIYIETGYYGFVGAMPGGIQRQANLRMLFERAKQY 760 Query: 540 EQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + SY L I+ + + N N VRIM++H +KGLE PV+ L G Sbjct: 761 KNISYKGLFNFINFINKLKSSSTDMGNAKILGENENVVRIMSIHKSKGLEFPVIILSGAG 820 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + K + L P + L + LK T E R+LYV Sbjct: 821 KRFNLTDINKSVLFHKELGLGPEYVNSERHISYPTIVKQVLKRKLKMETLSEEMRILYVA 880 Query: 655 MTRASDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDSFHNDERV 695 TRA ++LII + R + D + + Sbjct: 881 FTRAKEKLIITGTVDNIENTFQRWCEAAYCEEDKLPEYSLINSRNFLDWIGPAVARHPCG 940 Query: 696 KKIKLTNSIN---------KDEWIAYEWSTHHPENTP--------------LEREETIKQ 732 + I+ +W + +S + ++T LE + + Sbjct: 941 EIIRKVCPFEYNLNLITGDDSKWKVFVYSKDNFKSTLDENIDEDIIGKIKSLELDNNKEI 1000 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT------------------KGKTNLESLL 774 +E + + S + K Sbjct: 1001 YKNEVYRRLNWTYKYEQSSKIAAKFSVSELKRRFKLIDTENGIEFMEPIYLKKPAFLRES 1060 Query: 775 SDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITR 830 RG+++H ++Q I + K + + E K++ + I + Sbjct: 1061 KGLTPSERGIVMHLVMQHIDIDKVGSYEQIKEQVDKLVFRE--FITEAEAKSISVYKIIK 1118 Query: 831 LLENPMMTTAM-SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQISISQQN 877 + + S + Y EV +I + ++I G ID Sbjct: 1119 FFNSEIGIRMKKSNNVYREVPFYMEIESTELYKQLPQHIYRDEKVLIQGIIDCYFEENNE 1178 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + + +YKT H +I+ I + Q+ Y + L+ K L S+ + + Sbjct: 1179 LILVDYKTDHV--GDIDSIKEKYQVQIYYYGRALEKLTGKKVKKKYLYLFSKDYILDLS 1235 >gi|229114675|ref|ZP_04244089.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3] gi|228668740|gb|EEL24168.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3] Length = 1195 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 162/1039 (15%), Positives = 327/1039 (31%), Gaps = 139/1039 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68 + +D+ I K L+M P + ++ + + Sbjct: 179 LLEDVRFQLETAEQHIRKATELAMLPDGPAPRVETLQADAALLGMLSSAARESWTSVYEA 238 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121 + + +K+ +++ K+ L+ K K + + M Sbjct: 239 MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHP 298 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176 + L K ++ K+ ++DF DL +L ++ + + + + Sbjct: 299 VLEKLVKLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEVKPSAVALQYRNK 358 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 359 FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 411 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 L + + + + G K I+L +FRS ++L + +F + D Sbjct: 412 FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 468 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 + +G E + Q + + E T A + AR +A I M Sbjct: 469 LKLGASYLIGEDVAAELLCIQQTEEEVLEGEEGTEV-------EKAQLEARLMAQRIKAM 521 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + + + K R +Q +D ++L+R I V + Sbjct: 522 VDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLATGYF 577 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------V 466 + + +M + R I + D+ +L+SP+ +++++ + + + Sbjct: 578 EATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSSFL 637 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 + K + + A+ S D + G G + Sbjct: 638 KGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQR 697 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580 L + + E S+ L + +E+ RA + VRIMT+H + Sbjct: 698 QANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKS 757 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE PVVF+ G + + +K+ + + K + + +K Sbjct: 758 KGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMK 817 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTW 681 E R+LYV +TRA ++LI+ +N++ ++ + Sbjct: 818 MELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCY 877 Query: 682 YDMVYDSFHNDERVK-------------------------------KIKLTNSINKDEWI 710 D + S + + K E + Sbjct: 878 LDWIAPSLYRHRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELL 937 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK--- 767 +EE +LM + + K + E S + Sbjct: 938 EALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIR 997 Query: 768 --------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPA 818 RG +H ++Q + + N +L Sbjct: 998 KLRAPIKTRPRFMEKKGLTYAERGTAVHTVMQHVDLKKPITVEVLQEQIAGMVNKELLTF 1057 Query: 819 KEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIIISG 866 ++ + + + + ++ + ++ S EV + ++ + I++ G Sbjct: 1058 EQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGNSGESILVQG 1117 Query: 867 RIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPNKS 919 ID + + I + ++KT P E + QLS+Y K L+ S Sbjct: 1118 VIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL-QHP 1176 Query: 920 LV-CLLIYVSEPKVFIIPQ 937 + L + V I + Sbjct: 1177 VKEKCLYFFDGNYVVNIEE 1195 >gi|317470347|ref|ZP_07929738.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA] gi|316902151|gb|EFV24074.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA] Length = 1186 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 172/993 (17%), Positives = 337/993 (33%), Gaps = 110/993 (11%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERF 66 I KD + + + K + ETG P L+ + ++ A + E F Sbjct: 213 EILKDAKAVAESACAIMKKAKEAASETGGPYFYLPTLTADLETMEEIRSAESYKDFGELF 272 Query: 67 SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + L + +++ KK+ DL + ++ S + ++ Sbjct: 273 LSFTKPRLNGRKKKDDIIDKDLQEYCKDLRKKAYDLIDSIRSSYFYKPESEIIRQIRRVR 332 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK------RDVSAWIRYKID 174 + + L + + E KK + +LDF DL +LL + + I + Sbjct: 333 QPMEGFIGLTEKFYHRFMERKKLDNLLDFSDLEHLALELLTSGFSEDGTPIVSGIAKEKA 392 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + + I IDE QD++ +Q ++RS++ +F VGD KQSIYSF A P Sbjct: 393 EYFHEIYIDEYQDSNFLQDAILRSVSGQSL-------GEHNIFMVGDVKQSIYSFRLARP 445 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + + + +K G+ +IEL +FRS ++L V+ +F +A + + T Sbjct: 446 ELFIEKYHGFKKD----GKNSKLIELRNNFRSRREVLFTVNDIFYQIMHASLGNIEYTED 501 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 + S + N + + ++ +E + AR IA I Sbjct: 502 VALVPSFP-----------YEESGGAGGNAELLLVSRDWNDASEEDKDVLEARMIADRIK 550 Query: 355 NMIGTDTI--------FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 M+ + R + +DI++L+R K + + D I + Sbjct: 551 KMVDGPEPQMVLDYDEEGSEVYRKAEYRDIVILLRSVKGNA---EKIQVVLMDAGIPAIS 607 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 + + D + ++ +++L + + D+ L+SP+ + +D+ K + + Sbjct: 608 SSQSGYFDTVEVRTVLSLLTVVDNLYADIEMAAFLRSPMIGMTGEDLAK--LKLGGKKKY 665 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEV 525 A K + + L F S + L G + Sbjct: 666 MYDCLTEAAGKDEKADTALSVLKRLREAKTFLSLRELLWLAFDLTGYYHYVGAMPQGAKR 725 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTA 580 L E + Y + I +EQ AN N V I ++H + Sbjct: 726 QGNLLMLAEQAKAYEASRYKGVFHFIRYMEQCREYQMDFGEANTLGGNENLVTITSIHKS 785 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P+VFL T + + P P + ++K + + + L Sbjct: 786 KGLEYPIVFLAKTHKKFNLRDTGGSLLFHPDYFIGPDLVNIRQRTKEPTIMKGMISRQLV 845 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----------SNQRTWYDMVYDSFH 690 K + E R+LYV +TRA ++LI+ + ++ + R++ + + + Sbjct: 846 KDSLGEELRVLYVALTRAKEKLIMTGVQGSRHQPGGKGPVSYVDLLSARSYLEWLLMAAG 905 Query: 691 NDERVKKI--KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 N E L+ ++++ + E++ + Q + + Sbjct: 906 NMEESPFEIHFLSEEDVALSSAEEVFTSYRDRGLLTDELESMAGSEEAQGMREAFAYRYP 965 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLS--------------------DNQTFNRGLIIHK 788 D L S + K + + +RG +HK Sbjct: 966 YDKERDGRLKYSVSEIKRMSQAAEPEESYKPEPQKERLYPKFLKEKKEASPASRGTAVHK 1025 Query: 789 LLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845 +L+++ + I+ + + K+ E I L + + Sbjct: 1026 VLELMDFSLDYTPELLEEQISRW-SSEGKIEEGMEKLIPREDILAFLNSDLGLRIKKAAG 1084 Query: 846 YSEVSVSGKINCPK------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 E + +++ G ID + + + +YKT P E Sbjct: 1085 RKEQYKEAQFVMGVKFSEMEPEAKSRDYVVVQGIIDLYFKEEGELVLVDYKTDRIGPGEE 1144 Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 E + + AQL Y+K L+ K + IY Sbjct: 1145 EILAERYRAQLQYYKKALEQM-EQKKVKECYIY 1176 >gi|28210435|ref|NP_781379.1| ATP-dependent nuclease subunit A [Clostridium tetani E88] gi|28202872|gb|AAO35316.1| ATP-dependent nuclease subunit A [Clostridium tetani E88] Length = 1147 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 161/1004 (16%), Positives = 334/1004 (33%), Gaps = 134/1004 (13%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR- 111 +++ L F L++ + ++ K+ +++K K+S ++ + Sbjct: 151 IKKLLGEHEDNNIIDGLLCFDLSRLPGKRLKGEVKDTKDKAIKVRDKAKESINKLKEDIG 210 Query: 112 -----DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV- 165 N ++ + L Y++ K++ ++DF D+ ++L D Sbjct: 211 LGYENVEKNMKDLYPRMKCLIELVMKFTMEYDKRKREKNIIDFNDIEHFALEILTDFDKE 270 Query: 166 ----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP---RTLFA 218 + + + + +L+DE QD++ +Q ++ S++ + LF Sbjct: 271 EKVNPSSVALEYRNKFEEVLVDEYQDSNFVQEAILNSISRQNNLQSKIEDEKLIIPNLFM 330 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD KQSIY F A+P+ R + K+ I+L +FRS +I+ V+ +F Sbjct: 331 VGDIKQSIYRFRQAKPEL---FLRKYNNYSEEVSSKYRKIKLFKNFRSRKNIIEGVNFIF 387 Query: 279 SIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQL-WEQVVSQHDSQCNPQQESWTSYFDS 335 N L + + + L + + D + N + + + Sbjct: 388 KQIMSKNVGELEYGEEEKLNYGADFKELEEGKDLERDIEIHLMDKEENIEPYTEELGLEE 447 Query: 336 LPQESSASILARRIAYTISNMIGTDT-------IFSNGKKRVIQAKDILVLVRKRKDTPL 388 + + AR + I+N+I + S + R +Q +DI++L+R Sbjct: 448 EENIDNIQLEARMVGKVINNLIKDEESNSFMIQDKSTKEYRKVQYRDIVILMRATSAMAN 507 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 + N+ I V + + + IK +M++ + + + D+ + +L+ P+F+F Sbjct: 508 V---FTEELNNVGIPVFADTSSGYFETIEIKTIMSILQIVDNPRQDIPMLSVLRCPIFSF 564 Query: 449 SEDDIFKIC------------TQRHETETVYEYIQKFANCGISKFQH----VIKYIHELI 492 S +DI I + E E + + + + + ++ ++ Sbjct: 565 SPEDIIDIRLINRDISIYECLEKIKNKEPCLEEEKVYIDEINEELKERIISFLEKLNLWR 624 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551 + S F + G + L + E SY I Sbjct: 625 DNSIHMSIDQFIWYLYTETGYYGYVGAMPGGVQRQANLRLLFERAKQYENTSYKGFFNFI 684 Query: 552 SELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 S + + N N V+IM++H +KGLE PVV + TG K + Sbjct: 685 SFINKLRNTSGDMGSAKILGENENVVKIMSIHKSKGLEFPVVIMAGTGRGFNLQDIRKDI 744 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 L P + K + + + +K T E R+LYV TRA ++LII Sbjct: 745 LFHHQLGFGPEYVDLDKKIKYPTIMKKIIAQKIKLETFSEEMRILYVAFTRAKEKLIITG 804 Query: 667 HSNT----------SNEKKSNQRTWYDMVYDSFHNDERVKKIKL---------------- 700 + + + Y+++ + D + + Sbjct: 805 SVKNIEKSMSEWCFTGGEGGKRLPEYELIKSKNYLDWIMPTLTRHICFQKHIRRQFPEIE 864 Query: 701 --TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---------------L 743 + W W LE + + + + +K Sbjct: 865 IKNGIEDNSCWSLQLWHKKELLEDKLEETKERDIIKEIEWNKEKSCKNIHEEEVEKRLNW 924 Query: 744 FSPIKNDINEPYILNPSTIDTKGK-------------------TNLESLLSDNQTFNRGL 784 P L+ S I ++ + + G Sbjct: 925 KYKYIKASEIPAKLSVSEIKSRFELLDTGNSDNLIEENIFFRKPQFLEEFKKFSSAEIGT 984 Query: 785 IIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTA 840 H ++Q I +N I + ++ K + + I +++P++ Sbjct: 985 FTHLVIQHIDFQRTNSIEDIENQIEELIKRE--FLTKEQAKVINIKKIYNFIKSPIVDRI 1042 Query: 841 -MSCDSYSEVSVSGKIN-----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 S + E S +++ + I+I G ID ++ I +YKT + Sbjct: 1043 KKSDNVRREESFYIEMSSKDLIPSISEVYKDEKILIQGVIDLYFQEGNDLIILDYKTDYI 1102 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 ++IE + Q+ Y+K L+ K L + ++ Sbjct: 1103 --EDIEKTKEKYYLQIDYYKKALEKITGKKVKEKYLYLFNIDRL 1144 >gi|229541419|ref|ZP_04430479.1| recombination helicase AddA [Bacillus coagulans 36D1] gi|229325839|gb|EEN91514.1| recombination helicase AddA [Bacillus coagulans 36D1] Length = 1243 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 156/1040 (15%), Positives = 333/1040 (32%), Gaps = 140/1040 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEER 65 + D+ + + L++E G P +K L A + Sbjct: 224 AAVKADIHLQLQAAKDMLGEAYGLALEPGGPAPRAENYLNDMKITDRLLAAIH-GPWQGL 282 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------K 118 + ++++ T+ + + ++ K + DL++ KK+ ++ K + Sbjct: 283 YEEMNAWQFTRAKACKGDAYEAKLVKAADDLRKSAKKTLEDLKKDFFSRKPASFLKDMQE 342 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKI 173 M TL K Y K + ++DF DL D+L +++ + + Sbjct: 343 MRPVIAELRTLVKKFAEAYGAVKAEKGIVDFSDLEHFCLDILAEKNEDGSLTPSEVAKAY 402 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q+ +LIDE QD +++Q ++ + + F VGD KQSIY F AE Sbjct: 403 QQQFKEVLIDEFQDVNMVQETIMNLVAKGA-------GFDGNRFMVGDVKQSIYRFRLAE 455 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--AQGLSEDS 291 P L++ R + G I+L +FRS +IL + +F ++ DS Sbjct: 456 PNLFLKKYRDFDPEGRDTGL---RIDLSKNFRSRKEILDGTNFIFKQIMGLKVGEMAYDS 512 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 + +S + V++ + + + E + + + AR +A Sbjct: 513 QAALVAGASYPERDHPVKVALIDQADEAIEEDISDEETLD----RAELEQSQLEARYLAR 568 Query: 352 TISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I +I + +++ G R I+ KDI++L+R P I + I + Sbjct: 569 EIKKLIDEEQVYNPKTGTFRPIRYKDIVILMRSMAWAPTIMEELK----QAGIPLYTELS 624 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------ 463 D + +++L + I + D+ +L+SP+ E+ + I Sbjct: 625 TGYFDATEVSIMLSLLKVIDNPYQDIPLAVVLRSPIVGLDEEALALIRIHEKRGPYYEAV 684 Query: 464 -ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521 + + + K ++ + +A+ + + Sbjct: 685 KKFIADRPDPEEEEAHEKVSRFMEKLSVWRSVARQGDLSSLIWQLYRDTQFYDFAGGLPG 744 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576 G + L + + E+ S+ L + +E+ RA S + VR+MT Sbjct: 745 GKQRQANLRALYDRARQYEETSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMT 804 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE PVVF+ + + + + + Sbjct: 805 IHASKGLEFPVVFVAGLNRKFNMRDINQAFLLDKDFGFASKYIHPEKRITYPSLPQLAFK 864 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677 + K E R+LYV +TRA ++L + ++ ++ Sbjct: 865 RKKKLEMLAEEMRVLYVALTRAKEKLYLVGTVKNLGKRLEKWGKTKRQEDWLLPDHVRAA 924 Query: 678 QRTWYDMV----------------------------YDSFHNDERVKKIKLTNSINKDEW 709 T+ D + + E+ I+ + + +W Sbjct: 925 AGTYLDWIIPSLSRHADGTVLFGSDGRVVLDDPSKWQIAVLPKEQFADIQEPEQVGEADW 984 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN----------- 758 + + + +L F K ++E ++ Sbjct: 985 QHQVKAGLPVAAESAYKAQVFGRLSFRYSNEPATFRRAKQSVSELKRMHEEHDETNGTRF 1044 Query: 759 -PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE---HKRKNFITSYCTKNAK 814 P+ RG +H ++Q I + + + Sbjct: 1045 IPNAEKHIFDRPRFMQEKSITPAERGTAMHMVMQHIPFDAPPTYASVEALVEEMVKQE-- 1102 Query: 815 LWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDII 863 L ++ + + R E + ++ E+ S + + ++ Sbjct: 1103 LLTEEQADAIAAEQLVRFFETDIGRRILAAGRVMREMPFSLSVPAAEIYRDASLADEHVL 1162 Query: 864 ISGRIDQISISQQNIFIFEYKTH----HHVPQEIEH---IPYTHIAQLSIYEKILKDSYP 916 I G D ++ + + + ++KT E + + QL++Y + L+ Sbjct: 1163 IQGIFDCVAEEKDGLVLLDFKTDNIHGRFKGGFEEAEPVLRKRYEVQLALYSRALETIL- 1221 Query: 917 NKSLVC-LLIYVSEPKVFII 935 K + L + + I Sbjct: 1222 KKKVKAQYLYFFDGGHLLEI 1241 >gi|326389380|ref|ZP_08210948.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200] gi|325994743|gb|EGD53167.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200] Length = 1230 Score = 396 bits (1017), Expect = e-107, Method: Composition-based stats. Identities = 157/989 (15%), Positives = 334/989 (33%), Gaps = 134/989 (13%) Query: 50 AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ---EINKKSPDLKEKLKKSQ-- 104 A++L++ + EE +++ + K+ + E+ K ++K K+K+ + Sbjct: 256 AESLEKLLDCENWEEFRKQINAIEFDRLPRAGKDADPKVKDEVTKIRNEVKAKIKEIRNK 315 Query: 105 ---DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 D+ KI + + + A + L + Y + K++ ++DF D+ +L Sbjct: 316 FFSDDIEKIEEEIKAL--YPNMKALVDLILLFDKKYTDKKREKGIIDFNDIEHFALQILT 373 Query: 162 KRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 + D + ++ I +DE QD++LIQ ++ ++ + Sbjct: 374 EVDENGNVKPSEAALMYREKFQEIFVDEYQDSNLIQEVILSTIAREDT---------PNR 424 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 F VGD KQSIY F A P + + + I L +FRS I+ V+ Sbjct: 425 FMVGDVKQSIYRFRQANPHIFFEKYNTYSSKEEDKN---KKILLYKNFRSRPQIIDAVNF 481 Query: 277 VFSIPENAQGLSEDSTTTIRHR--------SSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 +F + D T + G V++ + + + ++E Sbjct: 482 IFKKIMSKNVGEIDYTEEEKLNCGADFGTPPLDAIVGGPVEIHLI---EKNDETPEEEEL 538 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDT-------IFSNGKKRVIQAKDILVLVR 381 + + + AR +A I ++ + + R ++ +DI++L+R Sbjct: 539 EVYGEEEEEIIDNIQVEARVVAQRIKELVTQNEKNTFMVYDKNLKNYRPVEYRDIVILLR 598 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 T + + I + + IK +++L + I + D+ + +L Sbjct: 599 A---TERWAPVFLEEFINVGIPAFADTGTGYFETTEIKTIISLLQVIDNPMQDIPLLAVL 655 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQ--KFANCGISKFQHVIKYIHELIHIAQFCS 499 +SP+F+F +++ I + + + + K + ++ + + A + Sbjct: 656 RSPIFSFIPEELIDIRLEEPNRAIYEALKKVSQREDELGQKAKSFLESLKKWQEKAIYMP 715 Query: 500 PHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---- 554 +F + G + L + E+ S+ L I+ + Sbjct: 716 VDEFLWYLYQDTGYYAYVGAMPQGVQRQANLRILFERAKQYEETSFKGLFNFINFINRLK 775 Query: 555 -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + N N VRIM++H +KGLE PVV + G Q + + L Sbjct: 776 VSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQFNLKDLSQSVLYHHLLG 835 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 P + + + + + +K + E R+LYV +TRA ++LI+ E Sbjct: 836 LGPEFVDFKRRISYPSIVKEAIKNKIKLESLSEEMRVLYVALTRAKEKLILVGSVKDIKE 895 Query: 674 KKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTNSIN---------- 705 K +++ D + + +K ++ + Sbjct: 896 KVKKWCNIAMLESKVPEYEILKGKSYIDWIGPAVIKHADLKPLRDFAQVQYVAVEEDSSQ 955 Query: 706 ------------------KDEWIAYEWSTHHPENTPLER--EETIKQLMDEQKIPKKLFS 745 ++E + + ++P +E ++L K Sbjct: 956 WQVRIWNKKDVIFDKKQVEEETNLLQRLENLDLDSPSSEFYDEVTRRLNYVYLYEKACHL 1015 Query: 746 PIKNDINEPYILNPSTI-----------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794 P K + E + + +G+ +H ++Q + Sbjct: 1016 PAKLSVTEIKRILNEEVIDEDTTSIFEKTVLKIPAFLEKKKGLTAAEKGIAMHLVMQKLD 1075 Query: 795 ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEV 849 L K I + + + + K + + I + + S + EV Sbjct: 1076 LNGDLSVEGIKKQIKNMVDRE--ILTEAQSKEIDIRRIEEFFRASLGRRMLSSQNVKREV 1133 Query: 850 SVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 KI + I + G ID + I + +YKT + + +E I Sbjct: 1134 PFHIKIKSTEVYKDLPEEYENEFIAVQGIIDCFFEEEGEIILIDYKTDYVTEEMMEEIKE 1193 Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + Q+ +Y K L+ K + IY+ Sbjct: 1194 KYKVQIDLYAKALEKI-TGKRVKEKYIYL 1221 >gi|328552685|gb|AEB23177.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens TA208] Length = 1234 Score = 396 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 154/1039 (14%), Positives = 329/1039 (31%), Gaps = 141/1039 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQT----QCIEERFS 67 E + +D + + K + L+ G P LQQ + + + Sbjct: 220 EYVREDAEMALFGAKQKLEKALELTKAPGGPAPRADNVLDDLQQIEELISCRHDFKALYE 279 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMF 120 + + + + + + + ++ DL+ KK ++ + M Sbjct: 280 RVPAVTFKRAKAVKGDEFDKALLDEATDLRNGAKKLIEKLKTDYFTRSPQDHLKSLKDMK 339 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQ 175 + L +E AK++ ++DF DL +L RD V + Sbjct: 340 PVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTARDEEGRRVPSEAAVYYQD 399 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + + +L+DE QDT+L+Q +++ + K+ + LF VGD KQSIY F AEP Sbjct: 400 QFHEVLVDEYQDTNLVQESILQLV-------KSGNEEAGNLFMVGDVKQSIYRFRLAEPL 452 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTT 293 L + + + AG I+L +FRS +DIL + +F + + D Sbjct: 453 LFLGKYKRFTEDGEGAG---QKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQA 509 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + S D+ E + + A+ IA I Sbjct: 510 ALKLGASYPPNDAAKTELLLIDSADDADSPEDAEDF----------ETVHWEAKAIAAEI 559 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 ++ + +GK R IQ +DI++L+R + I V N Sbjct: 560 RKLVSSPFKVYDGKTKTHRNIQYRDIVILLRSM----PWAPQLMEELKNQGIPVYANLTS 615 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-- 468 + + + +++ + I + D+ +L+SP+ E+++ I ++ + Sbjct: 616 GYFEAVEVAAALSVLKVIDNPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALK 675 Query: 469 ---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNE 524 + K + + + + S + + G + Sbjct: 676 AYIANGDRHDDLYQKLRTFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQ 735 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHT 579 L + E ++ L + +E+ RA S + VR+MT+H+ Sbjct: 736 RQANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHS 795 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 +KGLE PVVF G K + L + + + K + Sbjct: 796 SKGLEFPVVFTAGLGRSFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKM 855 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RT 680 ++ E R+LYV +TRA ++L + ++ + + Sbjct: 856 RRELLSEELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASS 915 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------------THHPENTPLEREE 728 + D + + ++ + + ++ PE E+ + Sbjct: 916 YLDFIGPALIRHSDMEAHRAPGLLAPEDIAHDPARFHIRMLQQSELLEDSPEERAEEKSK 975 Query: 729 TIKQLMDEQKIPKKLF---------------------------------SPIKNDINEPY 755 +K + + IP +++ + Sbjct: 976 RLKAIQHGEPIPDSFSFDDQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRS 1035 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT--SYCTKNA 813 ++ PS K + +G +H ++Q I + + Sbjct: 1036 LIKPSGDTLLYKRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKE 1095 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC---------PKKDII 863 L ++ + + + + + EV S + + ++ Sbjct: 1096 LLTEEQQDAIDIDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLL 1155 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916 + G ID + + +++ +YKT + + Q+ +Y K ++ Sbjct: 1156 VQGIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQITK 1215 Query: 917 NKSLVCLLIYVSEPKVFII 935 L + V + Sbjct: 1216 TNVKRRALYFFDGGHVLTL 1234 >gi|254853388|ref|ZP_05242736.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503] gi|300763922|ref|ZP_07073918.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017] gi|258606756|gb|EEW19364.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503] gi|300515263|gb|EFK42314.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017] Length = 1234 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 158/1025 (15%), Positives = 341/1025 (33%), Gaps = 133/1025 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + + + E P L + + + + S + Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + S + T + K+ +E +++ ++ KK R+ N + Sbjct: 285 AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K ++ E K++ VLDF DL +L K + ++ + ++ Sbjct: 345 KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T N+ LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ +G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 +S +L + +S+ + S + + +R IA I M Sbjct: 515 GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566 Query: 357 IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + I + D+ +L+SP+ +E+++ ++ + + + Y Sbjct: 623 ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K I+ ++ ++ + I + G + L Sbjct: 683 DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + K E + + + + Sbjct: 923 GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 IPVKSPYKDEIQRYMNYEYQNEEATKIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + G +H L+Q + + +++ + + + + K + Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101 Query: 825 -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873 + + E+ + T + EV S + + ++I G +D I Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDS-MI 1160 Query: 874 SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 ++ I + +YKT + + + Q+ +Y K ++ K L + Sbjct: 1161 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1220 Query: 928 SEPKV 932 + Sbjct: 1221 DGQHI 1225 >gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquefaciens FZB42] gi|251764498|sp|A7Z368|ADDA_BACA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|154351365|gb|ABS73444.1| AddA [Bacillus amyloliquefaciens FZB42] Length = 1235 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 152/1037 (14%), Positives = 331/1037 (31%), Gaps = 141/1037 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQT----QCIEERFSLL 69 + +D + + K + L+ G P LQQ + + + + Sbjct: 223 VKEDAEMALFGAKQKLEKALELTKAPGGPAPRADNFLDDLQQIEELISCRHDFDALYERV 282 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKS 122 + + + + + + ++ DL+ KK ++ + M Sbjct: 283 PAVSFKRAKAVKGDEFDKALLDEATDLRNGAKKLIEKVKTDYFTRSPQDHLKSLADMKPV 342 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEI 177 + L +E AK++ ++DF DL +L + R V + + Sbjct: 343 IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAVDEEGRRVPSEAAVYYQDQF 402 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +L+DE QDT+L+Q +++ + K+ + LF VGD KQSIY F AEP Sbjct: 403 HEVLVDEYQDTNLVQESILQLV-------KSGNEEAGNLFMVGDVKQSIYRFRLAEPLLF 455 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295 L + + + AG I+L +FRS +DIL + +F + + D + Sbjct: 456 LGKYKRFTESGAGAG---QKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQAAL 512 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + +S + S + + E + + A+ IA I Sbjct: 513 KLGASYPPNDAAKTELLLIDSADGADSSEDAEDF----------ETVHWEAKAIAGEIRK 562 Query: 356 MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 ++ + +GK R IQ +DI++L+R + I V N Sbjct: 563 LVSSPFKVYDGKTKTHRNIQYRDIVILLRSM----PWAPQLMEELKNQGIPVYANLTSGY 618 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467 + + + +++ + I + D+ +L+SP+ E+++ I ++ + Y Sbjct: 619 FEAVEVAAALSVLKVIDNPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALKAY 678 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 + K + + + + S + + G + Sbjct: 679 LANADRHDELYQKLRTFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQRQ 738 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + E ++ L + +E+ RA S + VR+MT+H++K Sbjct: 739 ANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 798 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF G K + L + + + K +++ Sbjct: 799 GLEFPVVFTAGLGRSFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKMRR 858 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RTWY 682 E R+LYV +TRA ++L + ++ + ++ Sbjct: 859 ELLSEELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASSYL 918 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------------THHPENTPLEREETI 730 D + + ++ + + ++ +P+ E+ + + Sbjct: 919 DFIGPALIRHRDMEAHRTPGLSSSEDIARDPSRFHIRMLQQSELLEENPKERAEEKSKRL 978 Query: 731 KQLMDEQKIPKKLF---------------------------------SPIKNDINEPYIL 757 K + + IP +++ + ++ Sbjct: 979 KAIQQGEPIPDSFSFDDQARRLLEWEYPYRELTAIRTKQSVSELKRKQEYEDEYSGRSLI 1038 Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT--SYCTKNAKL 815 PS + + +G +H ++Q I + + L Sbjct: 1039 KPSGDTLLYRRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKELL 1098 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCP---------KKDIIIS 865 ++ + I + + + EV S + + +++ Sbjct: 1099 TEEQQEAIDIEEIVQFFGTEIGKDLLRALRIDREVPFSMALPAGEVYKDAETAGEPLLVQ 1158 Query: 866 GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 G ID + + +++ +YKT + + Q+ +Y K ++ K Sbjct: 1159 GIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQITKTK 1218 Query: 919 SLVCLLIYVSEPKVFII 935 L + V + Sbjct: 1219 VKGRALYFFDGGHVLTL 1235 >gi|15895530|ref|NP_348879.1| ATP-dependent exoDNAse beta subunit [Clostridium acetobutylicum ATCC 824] gi|81529946|sp|Q97GV3|ADDA_CLOAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|15025265|gb|AAK80219.1|AE007727_3 ATP-dependent exonuclease (exonuclease V) synthesis protein AddA (helicase and exonuclease domains) [Clostridium acetobutylicum ATCC 824] Length = 1252 Score = 395 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 157/982 (15%), Positives = 320/982 (32%), Gaps = 123/982 (12%) Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 E+ + L + K+ +E K DL++ +KKS + + N+ ++ + Sbjct: 284 EKLYEELKNVQFKTLKRCPKD-ADKEKQKLVRDLRDGVKKSLSKISEDILSQNSEEIKEE 342 Query: 123 TLASLTLAKYLNA-------HYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIR 170 L K L+ Y++ KKK ++DF D +L K D V + Sbjct: 343 FKVLYPLMKTLSELVIEFDIRYKDKKKKRGIIDFNDFEHMCLSILTKSDESGNIVPSETA 402 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 KI ++ ILIDE QD++++Q ++ +++ + LF VGD KQSIY F Sbjct: 403 LKIREKYEEILIDEYQDSNMVQEVILSTISRK-------DTENPNLFMVGDVKQSIYRFR 455 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 A P L + + N +K + L +FRS ++L V+ VF + D Sbjct: 456 QANPGIFLEKYNSYK---ENKDEKNRKVLLYKNFRSRKEVLDSVNFVFKQIMSVNIGELD 512 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + + L + + + + + + AR I Sbjct: 513 YDDNEKLNLGANYEEIEENLISHSAELNIIEKSEDNTEIKENNEDEESVDNIMLEARLIG 572 Query: 351 YTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + + R + KDI++L+R K + + I V + Sbjct: 573 RRIIELKENFKVLDKNTNVYRKAEFKDIVILLRSTKGWANV---FSDELKNMGIPVFADA 629 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETV 466 D +K +++L + I + D+ +LKSP+ FS +D+ I +T + + Sbjct: 630 NSGYFDAPEVKTMLSLLQVIDNPRQDIPMAAVLKSPVGGFSVEDLIDIKVIEGDTFYDKL 689 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 + + + + ++ + + +F + + G + Sbjct: 690 KVAADIGDDEFSVRIRTFLNRLYRWRKESLYTPIDEFIWYLYTDTGYYGYVGAVSGGIQR 749 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTA 580 L + SY L I+ L + N N VRIM++H + Sbjct: 750 QANLKMLFQRAKIYSETSYKGLFNFINFINKLKLTSGDMGSAKILGENENVVRIMSIHKS 809 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P+VF+ G + L P + + + + ++ Sbjct: 810 KGLEFPIVFVGGLGKNFNLMDMNNPVLFHNYLGFGPEYVDYKKRISHKTLAKEAIKNRIR 869 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SNEKKSNQRTW 681 T E R+LYV TRA ++LI+ + S + +++ Sbjct: 870 IETLSEEMRILYVAFTRAKEKLIMVGSVSDIKRSVFKWAVNLRSNQNKISEDYVLKSKSF 929 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM------- 734 D + + + + ++ +K+ L R + + Sbjct: 930 LDWIASAVIRHKDAENLRDIMDTSKENIDNLVCDPSSWRVNVLSRNDVLSFNQLLLEEEK 989 Query: 735 --------------------------DEQKIPKKLFSPIKNDINEPYILNPSTI------ 762 +E K + + P +L+ + + Sbjct: 990 NINEKLTQFYKRLKEIRSSNYESVYIEEIKSRLEFKYRYEKAAELPSLLSVTELKRNINE 1049 Query: 763 ------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSY 808 K + RG +H ++Q + + I Sbjct: 1050 DNDEYATKIFTPSLVKKPLFLEEVKKMSPSERGTAVHSVMQHLDFSSISCDMSIKNIRHQ 1109 Query: 809 CTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN-------- 856 ++ K+ +++ + I + ++P+ + + + Y E ++ Sbjct: 1110 IDDMVFRRILTEKQAESVNINRILKFFQSPIGSRVIKAEKVYREFPFQIRVKSTEIYNDL 1169 Query: 857 ---CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913 ++II+ G +D I + +YK + + + + Q++ Y++ L+ Sbjct: 1170 PKIYDDENIIVQGIVDLFFKENDEIVLLDYKNDYINDENLNETVKKYTYQINYYKRALEI 1229 Query: 914 SYPNKSLVCLLIYVSEPKVFII 935 K L I Sbjct: 1230 VTGLKVKEKYLYLFYTGDTIKI 1251 >gi|16804306|ref|NP_465791.1| hypothetical protein lmo2267 [Listeria monocytogenes EGD-e] gi|224500935|ref|ZP_03669242.1| hypothetical protein LmonFR_00190 [Listeria monocytogenes FSL R2-561] gi|81592702|sp|Q8Y511|ADDA_LISMO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|16411737|emb|CAD00345.1| lmo2267 [Listeria monocytogenes EGD-e] Length = 1235 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 155/1024 (15%), Positives = 343/1024 (33%), Gaps = 130/1024 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + ++ + E P L + Q L + + + + Sbjct: 226 IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + + + T + K+ + +++ ++ KK R+ N + Sbjct: 285 SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNCLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K +A++ E K++ VLDF DL +L D ++ + ++ Sbjct: 345 KPDIQTLSELVKKFSANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ + G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 ++ +L + D++ + S + + +R IA I M Sbjct: 515 GANFPETNAMETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIYDKKLKQNRPIQYRDIIILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + + + D+ +L+SP+ +E+++ +I + + + + Y Sbjct: 623 ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + +K ++ ++ ++ + I + G + L Sbjct: 683 DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + + E + + + Sbjct: 923 GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824 + G +H L+Q + + +++ T + + + K + Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102 Query: 825 LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874 + I E+P+ T + EV S + + ++I G +D + Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162 Query: 875 QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 ++ I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222 Query: 929 EPKV 932 + Sbjct: 1223 GQHI 1226 >gi|224499009|ref|ZP_03667358.1| hypothetical protein LmonF1_04628 [Listeria monocytogenes Finland 1988] gi|254826845|ref|ZP_05231532.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165] gi|258599223|gb|EEW12548.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165] Length = 1235 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 155/1024 (15%), Positives = 342/1024 (33%), Gaps = 130/1024 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + ++ + E P L + Q L + + + + Sbjct: 226 IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + + + T + K+ + +++ ++ KK R+ N + Sbjct: 285 SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K A++ E K++ VLDF DL +L D ++ + ++ Sbjct: 345 KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ + G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 ++ +L + D++ + S + + +R IA I M Sbjct: 515 GANFPETNAMETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + + + D+ +L+SP+ +E+++ +I + + + + Y Sbjct: 623 ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + +K ++ ++ ++ + I + G + L Sbjct: 683 DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + + E + + + Sbjct: 923 GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824 + G +H L+Q + + +++ T + + + K + Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102 Query: 825 LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874 + I E+P+ T + EV S + + ++I G +D + Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162 Query: 875 QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 ++ I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222 Query: 929 EPKV 932 + Sbjct: 1223 GQHI 1226 >gi|254520364|ref|ZP_05132420.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA] gi|226914113|gb|EEH99314.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA] Length = 1251 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 158/975 (16%), Positives = 317/975 (32%), Gaps = 127/975 (13%) Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 FS L S + + I + I KL + + Sbjct: 281 SFSRLKSVKKDKVSDEESLEIVKSIRDSIKKKTSKLIEDSFSMTVNDALNGIKNSYPYMK 340 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINH 179 L ++E K++ +LDF DL +L + + + + + Sbjct: 341 MISQLTLEFINRFKEKKRERNILDFNDLEHLCLKILIENDEEDNICPSSVANGFREYFDE 400 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +L+DE QD++ +Q +I ++ +F VGD KQSIY F A+P+ L Sbjct: 401 VLVDEYQDSNNVQEAIIDLVSRKTLE-------NPNVFMVGDVKQSIYRFRQAKPELFLD 453 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIRH 297 + G I+L +FRS ++++ V+ +F + L + + Sbjct: 454 KYNRYP---LEDGDLNRKIQLYKNFRSREEVISGVNYIFKEVMSKTVGELEYNDDEALNL 510 Query: 298 RSSRIGQ-------VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 ++ G ++L S + + + + S + AR +A Sbjct: 511 GANYKENNDENTMIAGPIELHILDKSGEYTTEVEEYDGEGL-VEEEEDIDSIGLEARIVA 569 Query: 351 YTISNMIGTDT---------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 I ++ D G+ R ++ KDI++L+R T + + Sbjct: 570 RRIKELLNPDPKTGKVFKVLDKETGEYRPLKYKDIVILLRA---TRNWSEIFLEEIGSEG 626 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 I V + + + I+ +M+L + I + D+ + +L+SPL +FS +++ I Sbjct: 627 IPVYADTGTGYFETIEIRTMMSLLKVIDNPMQDVPMISVLRSPLVSFSAEELGDIRLLDK 686 Query: 462 ETETVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 E + + + +K + I + + + + + +F + Sbjct: 687 EKYFYEIIKGVSDDVYEVNEELKNKCKIFINNLGKWRNKSIYTPIDEFIWYLYMDTAYYG 746 Query: 516 QF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANH 569 G L + EQ S+ L I+ + + N Sbjct: 747 YVGAMPNGKLRQANLKILFQRAKQFEQTSFKGLFNFINFINKLRNSSGDMGSAKILGENE 806 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629 + VRIM++H +KGLE PVVF G Q K + L P ++ Sbjct: 807 DVVRIMSIHKSKGLEFPVVFTCGFGKQFNLMDLNKSILYHDDLGLGPDYVDLERRNSYST 866 Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ----------- 678 + K + T E R+LYV TRA ++LII + + S Sbjct: 867 LAKEAIKKKILFETLSEEMRILYVAFTRAKEKLIITGATRNLEKSISRWVSSAALDDEIV 926 Query: 679 --------RTWYDMVYDSFHNDERVKKIK------------LTNSINKDEWIAYEWSTHH 718 +++ D + + ++++ ++ W + Sbjct: 927 PASEVLKGKSYLDWIGMAICKHRDGEELRKYIGANNSSIINDFSTWRTQMWTKNLLAVEK 986 Query: 719 PENTPLEREET-------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------- 762 E E EET + + E + P ++ S + Sbjct: 987 NEVAVDENEETDLFINSDVDHIDKEIERRLNYKYKYDLAGKLPSNVSVSDLKRSLYNNEN 1046 Query: 763 -----------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT- 810 K RG I H ++Q + + ++ T + Sbjct: 1047 DDVITVNIFSDKEVLKPKFLQEKRGLSASERGTIAHFIMQKLDLNKVNTKEEIDTQIYSM 1106 Query: 811 KNAKLWPAKEYKNLLL-SITRLLENPMMTTAMSCD-----SYSEVSVSGKIN-------- 856 K+ L +E K + S ++ + ++ E+ +I+ Sbjct: 1107 KDKNLLTEEEIKAVQKISFISFFKSNLGKRLLNAFNTGKLVKRELPFYTEISSLNIDSTL 1166 Query: 857 ----CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912 +++ + G ID I + I + +YKT + + I + Q+ Y+ ++ Sbjct: 1167 SEEVYGNENVRLQGIIDCIFEEEDKIILLDYKTDYVEHGKESEILDKYKIQIKYYKDAVE 1226 Query: 913 DSYPNKSLVCLLIYV 927 K + +Y+ Sbjct: 1227 KI-TGKEVKECYLYL 1240 >gi|296132525|ref|YP_003639772.1| recombination helicase AddA [Thermincola sp. JR] gi|296031103|gb|ADG81871.1| recombination helicase AddA [Thermincola potens JR] Length = 1279 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 147/1074 (13%), Positives = 325/1074 (30%), Gaps = 166/1074 (15%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTI--LKKAQTLQQASQTQCIEERFSLLSSFF 73 + + + + + L++ G P + + L Sbjct: 217 LLQWAELQLSGCLVKLKEAEKLALRPGGPAAYLDNLRDDMVVVHDLLAAARSWDGLHRAL 276 Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-----------TYKMFKS 122 +F K ++I++ + +KL++ + I R + Sbjct: 277 QDLQFGKLKACRNKDIDETLKERTKKLREEAKKTIASLSRDLFARPLGEHVADLERTAPY 336 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR------DVSAWIRYKIDQE 176 L + Y E K ++DF DL +L + + + ++ + Sbjct: 337 VRTVAGLVRAFMERYREMKTARGLVDFSDLEHYCLKVLLDEKSTPQKPMPSPVALELREY 396 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +L+DE QD + +Q ++ ++ + + LF VGD KQSIY F AEP Sbjct: 397 FAEVLVDEYQDINAVQETILHLVSR-----QGEDAERPNLFMVGDVKQSIYRFRLAEPSL 451 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTT 294 + + + A G+ ++L +FRS +++ V+ +F + L D+ Sbjct: 452 FMSKYLAYPRTA---GEACRAVDLTQNFRSRREVIDAVNYIFRQIMTPRLGELIYDNKAE 508 Query: 295 IRHRSSRIG-------QVGTVQLW----------EQVVSQHDSQCNPQQESWTSYFDSLP 337 + + G V+L + ++ D Sbjct: 509 LHCGALYADVPGGGPPAGGPVELHLLEKKVDIGAPGGEENEQPDAIDAGDDASNSDDDPA 568 Query: 338 QESSASILARRIAYTISNMIG----------TDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 + + AR +A I ++ + G ++ +DI++L+R + Sbjct: 569 ELDATQREARLVARRIKELVSGTAERPGPQLQVFDKTTGGYHPVRYRDIVILMRATRGAA 628 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 I I V + I+ +M+L + I + D+ +L+SP+ Sbjct: 629 NI---FVEELRGAGIPVYADLDTGYFAATEIEIVMSLLKIIDNPRQDIPLAAVLRSPIVG 685 Query: 448 FSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 + +++ + + + ++ Q + + + +A+ S Sbjct: 686 LTAEELALVRLCAPSRNSRFYDAVQAAAADGPVPEPVKTRLQAFLTSLEQWRTMARQGSL 745 Query: 501 HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--- 556 + G + L + + E +Y L + +E+ Sbjct: 746 AGLVWRLYNETGYYTYVGGMPGGMQRQANLRALYDRARQYEATAYRGLFRFLRFIERFQD 805 Query: 557 --YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 RA N + VRIM++H +KGLE PVV + G Q + + + + L Sbjct: 806 LGNDLGTARALGENEDVVRIMSIHKSKGLEFPVVIVAGLGKQFNTVDLRQNVVLHKELGI 865 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------- 667 + + + S + K + E R+LYV +TRA ++LI+ Sbjct: 866 GLPVVEPELPLTYPSLVQSAIRKKNQMEMLAEEMRVLYVALTRAREKLILIGSAAELEKC 925 Query: 668 ------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK-------LTNSINKDE 708 + + +++ D + + + I+ ++ Sbjct: 926 AAQWCQNVLHKEWPLPDVSLAGAKSFLDWICPAVARHREGQAIRDLAGCDEAPAGEPAED 985 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK-------------------LFSPIKN 749 + P + + E + + +K P Sbjct: 986 RSLWSVRVWRPGECLVPQPEEPADYEELLEKVRKMEPVDITAGQTKVISEALSWKYPFAL 1045 Query: 750 DINEPYILNPSTIDTKG--------------------------KTNLESLLSDNQTFNRG 783 +P + I + RG Sbjct: 1046 TAGKPSKAAVTEIKNSFAGMEMEETHGSHPAGELAVLRKFNFIRPRFYQNQKGLTAAERG 1105 Query: 784 LIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM 841 +H ++Q + ++ + +L A++ K + I + + + Sbjct: 1106 SAVHLVMQHVDLRGDLTEQGIAGQLARMQARELLTAEQAKAINPKDIAGFFNSEIGRRML 1165 Query: 842 SCDS-YSEVSVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHV- 889 D Y E+ + + + +++ G ID + + +YKT Sbjct: 1166 RADEIYRELPFTVTLPAEVIYSDLPAGCGEAVLVQGVIDCLLKEGDGFVLLDYKTDRLPV 1225 Query: 890 -------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV-SEPKVFII 935 ++ + + QL+IY ++ K + IY+ + K I Sbjct: 1226 EKNSLPAGDVLQVLADKYRGQLNIYAMAVERILR-KPVQAKYIYLFAVGKTVEI 1278 >gi|331268546|ref|YP_004395038.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925] gi|329125096|gb|AEB75041.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925] Length = 1244 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 160/999 (16%), Positives = 316/999 (31%), Gaps = 124/999 (12%) Query: 42 GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101 L L S + LS + T + ++ +K D++ K+K Sbjct: 264 DFENELAMIDDLI-LSAKSSWNSLYDELSKIKFGRLKTCRGCE-DKKTQEKVKDIRNKVK 321 Query: 102 -KSQDEFIKIRDRFN-------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 + QD+ K +N ++ + L Y AKK+ ++DF D Sbjct: 322 KQLQDDIKKKVISYNGDEIVSDLMNLYPIMKSLTDLVLKFMNRYANAKKERGIIDFNDFE 381 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 ++L + + K+ Q IL+DE QD++ +Q +I S+ Sbjct: 382 HFCLEILGHEE----VSLKLKQRYVEILVDEYQDSNYVQEAIINSIARQDEET----GKY 433 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIY F A+P+ R K + L +FRS ++L Sbjct: 434 NNVFMVGDVKQSIYRFRQAKPEL---FLRKYNSYLEEDNAKERKVNLFKNFRSRKEVLDG 490 Query: 274 VDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 V+ +F EN L D + + L + + + Sbjct: 491 VNFIFKQIMSENIGELEYDDNEALNLGADFEEDNEDKYLVGGAIELNLMEKTKGDIEGQE 550 Query: 332 YFDSLPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRK 384 D + I R +A I+ ++ + R ++ +DI++L+R Sbjct: 551 EDDEILSNI--QIEVRLVAKRINELVNPEMGEPFKVYDNDLKGYRNVEYRDIVILLRSTS 608 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + I + + + IK +++L I + D+ + +L+SP Sbjct: 609 ---RWAPVFMDELKEKLIPAYADVGNGYFESVEIKTILSLLEIIDNPRQDIPLIAVLRSP 665 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH-------VIKYIHELIHIAQF 497 + +F+ +++ I + + + Y+ I K K +K ++ + Sbjct: 666 IASFTPEELIDIRLENKDGD-FYQGILKILKSEDEKLDSLKKKCNIFLKKLNFWREKSIH 724 Query: 498 CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-- 554 +F + + G + L + E+ SY L I+ + Sbjct: 725 IPIDEFIWYLYMDTGYYGYVGALSGGMQRQANLKILFQRARQYEKTSYKGLFNFINFINR 784 Query: 555 ---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 + N N VRIM++H +KGLE PVV L G +++ Sbjct: 785 LKVSSGDMGSAKILGENDNVVRIMSIHKSKGLEFPVVILSALGKNFNMQDLNRRILYHDE 844 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L P + + + L K +K + E R+LYV +TRA ++LI+ ++ Sbjct: 845 LGFGPDYIDLEKRISYETVLKAALKKKIKLESLSEEMRILYVALTRAKEKLIMTGAVSSI 904 Query: 672 NEKKSNQRT-------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 + + D + + + ++ I E + Sbjct: 905 EKSSKQWAYSLQGDNYKLSQYQVLTGKNYLDWICPVIMRHKDGEILREFAGIESFEKVNL 964 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK----------------------LFSPIKND 750 + E + E I P Sbjct: 965 IEDESKWKIKVNNVSEILHNNHKEDIILDDIEEIENIEETSSFYDEINSRLNFKYPYIES 1024 Query: 751 INEPYILNPSTI-------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 P +L + + K + ++G +H ++Q Sbjct: 1025 SKLPTLLTVTELKRMKNASMYEDYAKDMYTPKLVKKPSFMEKDKKLTGADKGTAMHAVMQ 1084 Query: 792 VIFTLPEHKRKNFITSYCTKNAKLW-PAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSE 848 + E + K + ++ +++ I + + + + E Sbjct: 1085 KLDYKKELNIEEVKVQMENMVKKEFVTKEQIESVDPSKILNFFNTSIGKRFLKAKEVERE 1144 Query: 849 VSVSGKIN------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 V ++ + I+I G ID + I + +YK+ + E + I Sbjct: 1145 VPFHIQLKSTEIFEGLSKDIYSDEHIMIQGIIDCYFEEEDGIVLVDYKSDYFKDGEEQSI 1204 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + AQ+ Y + +++ K L K I Sbjct: 1205 IKKYKAQIEYYARAIEELTNKKVKEKYLYLFYVDKEVEI 1243 >gi|289435607|ref|YP_003465479.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171851|emb|CBH28397.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1236 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 148/950 (15%), Positives = 302/950 (31%), Gaps = 111/950 (11%) Query: 79 TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138 + + ++K L ++ + KM L K + Sbjct: 305 EEYVEEAKKFRDAAKKEIKNVLIDWFSR-NEVNYLADLEKMKPDIKTLSNLVKKFAEDFF 363 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 E K+K VLDF DL ++L K + ++ +LIDE QDT+++Q ++ Sbjct: 364 EEKQKRGVLDFNDLEHLALNILLKEGAPTDVAKSYQKQFKEVLIDEYQDTNMVQETILTL 423 Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 +T T+ + LF VGD KQSIY F AEP + + + ++ TN G I Sbjct: 424 VTR-------TNETSGNLFMVGDVKQSIYRFRLAEPTLFMAKYQQYRQDGTNGGI---RI 473 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 +L +FRS ++L + +F + Q + D + + + Sbjct: 474 DLSRNFRSRKEVLDATNFIFRQLMDKQVAEIDYDDAAELTLGARFPESQNMSTELLLI-- 531 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQA 373 ++ T S + + AR IA I M+ + K R IQ Sbjct: 532 ----DMKTEEIEATDDELSPQELQKNQVEARAIAMKIRAMVDNKFPIYDKKMQQNRPIQY 587 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +DI++L R P I + L I N+ + + ++AL + I + Sbjct: 588 RDIVILSRAMTSAPDIEEAMKIL----DIPFYANNNSGYFETTEVATMIALMKVIDNPYQ 643 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHE 490 D+ +L+SP+ E+++ +I + + + + + + K IK ++ Sbjct: 644 DIPLAAVLRSPIIGLKEEELGQIRMAKKKGYFFDAMLAFKDSVNSEAADKISEFIKQLNN 703 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 ++ + I + G + L + + E+ S+ L Sbjct: 704 WRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFR 763 Query: 550 LISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 + +E+ + + VR+MT+H +KGLE PVV + + Sbjct: 764 FVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVAGLSRKFNMRDIYS 823 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 K + + + + + E R+LYV +TRA ++LI+ Sbjct: 824 KSLLDKDYGFASAYRDIEKMIVYPTIMQQAIKQKKTREMIAEEMRVLYVALTRAEEKLIL 883 Query: 665 CKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 + ++ + + D + + K++ I Sbjct: 884 VGTVPNFEKTSKNWLQVAKGKETILPAAVRAKAKCYLDWIGYTLIRHTSFKELLCEELIQ 943 Query: 706 KDEWIAYEWST-----------------HHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + Q + +I + + K Sbjct: 944 TLPTDMMLQIEIKTKEMFLSSEKEGVKQDNWMENIKAHQPVPVQSAYKDEIKRFMNYRYK 1003 Query: 749 NDINEPYILNPSTIDTKG----------------------KTNLESLLSDNQTFNRGLII 786 ++ + S + K + G + Sbjct: 1004 DEASTKIRAKQSVTELKRQFTLQDSWSDTTLLKEFQKVSLDRPKFLQKNKLSATEVGTAM 1063 Query: 787 HKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842 H L+Q + P + + + L A+ + I E+ + +S Sbjct: 1064 HTLMQAVPLENKPSEEDVKQLLQTMIEKDILTDAQVKAINIDQIIGFFESELGQNVLSEK 1123 Query: 843 CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHHV----- 889 + EV S + + ++I G +D + + +I + +YKT Sbjct: 1124 ENVKREVPFSYLLPVEKLDKQANLDEHVLIQGVVDSMIEQEDSIILIDYKTDKIAGRYSS 1183 Query: 890 -PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938 + + + Q+ +Y + ++ + L + + I Sbjct: 1184 WEAAEKIMKERYQVQIKLYAEAIEAISGKRVSQAYLYFFDGQHICQINTE 1233 >gi|284802713|ref|YP_003414578.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578] gi|284995855|ref|YP_003417623.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923] gi|284058275|gb|ADB69216.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578] gi|284061322|gb|ADB72261.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923] Length = 1235 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 155/1024 (15%), Positives = 342/1024 (33%), Gaps = 130/1024 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + ++ + E P L + Q L + + + + Sbjct: 226 IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + + + T + K+ + +++ ++ KK R+ N + Sbjct: 285 SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K A++ E K++ VLDF DL +L D ++ + ++ Sbjct: 345 KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ + G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 ++ +L + D++ + S + + +R IA I M Sbjct: 515 GANFPETNAMETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + + + D+ +L+SP+ +E+++ +I + + + + Y Sbjct: 623 ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + +K ++ ++ ++ + I + G + L Sbjct: 683 DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMWDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + + E + + + Sbjct: 923 GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824 + G +H L+Q + + +++ T + + + K + Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102 Query: 825 LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874 + I E+P+ T + EV S + + ++I G +D + Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162 Query: 875 QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 ++ I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222 Query: 929 EPKV 932 + Sbjct: 1223 GQHI 1226 >gi|325509678|gb|ADZ21314.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA (helicase and exonuclease domains) [Clostridium acetobutylicum EA 2018] Length = 1250 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 157/982 (15%), Positives = 320/982 (32%), Gaps = 123/982 (12%) Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 E+ + L + K+ +E K DL++ +KKS + + N+ ++ + Sbjct: 282 EKLYEELKNVQFKTLKRCPKD-ADKEKQKLVRDLRDGVKKSLSKISEDILSQNSEEIKEE 340 Query: 123 TLASLTLAKYLNA-------HYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIR 170 L K L+ Y++ KKK ++DF D +L K D V + Sbjct: 341 FKVLYPLMKTLSELVIEFDIRYKDKKKKRGIIDFNDFEHMCLSILTKSDESGNIVPSETA 400 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 KI ++ ILIDE QD++++Q ++ +++ + LF VGD KQSIY F Sbjct: 401 LKIREKYEEILIDEYQDSNMVQEVILSTISRK-------DTENPNLFMVGDVKQSIYRFR 453 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 A P L + + N +K + L +FRS ++L V+ VF + D Sbjct: 454 QANPGIFLEKYNSYK---ENKDEKNRKVLLYKNFRSRKEVLDSVNFVFKQIMSVNIGELD 510 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + + L + + + + + + AR I Sbjct: 511 YDDNEKLNLGANYEEIEENLISHSAELNIIEKSEDNTEIKENNEDEESVDNIMLEARLIG 570 Query: 351 YTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + + R + KDI++L+R K + + I V + Sbjct: 571 RRIIELKENFKVLDKNTNVYRKAEFKDIVILLRSTKGWANV---FSDELKNMGIPVFADA 627 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETV 466 D +K +++L + I + D+ +LKSP+ FS +D+ I +T + + Sbjct: 628 NSGYFDAPEVKTMLSLLQVIDNPRQDIPMAAVLKSPVGGFSVEDLIDIKVIEGDTFYDKL 687 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 + + + + ++ + + +F + + G + Sbjct: 688 KVAADIGDDEFSVRIRTFLNRLYRWRKESLYTPIDEFIWYLYTDTGYYGYVGAVSGGIQR 747 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTA 580 L + SY L I+ L + N N VRIM++H + Sbjct: 748 QANLKMLFQRAKIYSETSYKGLFNFINFINKLKLTSGDMGSAKILGENENVVRIMSIHKS 807 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P+VF+ G + L P + + + + ++ Sbjct: 808 KGLEFPIVFVGGLGKNFNLMDMNNPVLFHNYLGFGPEYVDYKKRISHKTLAKEAIKNRIR 867 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SNEKKSNQRTW 681 T E R+LYV TRA ++LI+ + S + +++ Sbjct: 868 IETLSEEMRILYVAFTRAKEKLIMVGSVSDIKRSVFKWAVNLRSNQNKISEDYVLKSKSF 927 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM------- 734 D + + + + ++ +K+ L R + + Sbjct: 928 LDWIASAVIRHKDAENLRDIMDTSKENIDNLVCDPSSWRVNVLSRNDVLSFNQLLLEEEK 987 Query: 735 --------------------------DEQKIPKKLFSPIKNDINEPYILNPSTI------ 762 +E K + + P +L+ + + Sbjct: 988 NINEKLTQFYKRLKEIRSSNYESVYIEEIKSRLEFKYRYEKAAELPSLLSVTELKRNINE 1047 Query: 763 ------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSY 808 K + RG +H ++Q + + I Sbjct: 1048 DNDEYATKIFTPSLVKKPLFLEEVKKMSPSERGTAVHSVMQHLDFSSISCDMSIKNIRHQ 1107 Query: 809 CTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN-------- 856 ++ K+ +++ + I + ++P+ + + + Y E ++ Sbjct: 1108 IDDMVFRRILTEKQAESVNINRILKFFQSPIGSRVIKAEKVYREFPFQIRVKSTEIYNDL 1167 Query: 857 ---CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913 ++II+ G +D I + +YK + + + + Q++ Y++ L+ Sbjct: 1168 PKIYDDENIIVQGIVDLFFKENDEIVLLDYKNDYINDENLNETVKKYTYQINYYKRALEI 1227 Query: 914 SYPNKSLVCLLIYVSEPKVFII 935 K L I Sbjct: 1228 VTGLKVKEKYLYLFYTGDTIKI 1249 >gi|254831297|ref|ZP_05235952.1| hypothetical protein Lmon1_08062 [Listeria monocytogenes 10403S] Length = 1235 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 155/1024 (15%), Positives = 341/1024 (33%), Gaps = 130/1024 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + ++ + E P L + Q L + + + + Sbjct: 226 IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + + + T + K+ + +++ ++ KK R+ N + Sbjct: 285 SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K A++ E K++ VLDF DL +L D + + ++ Sbjct: 345 KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKGSEVAQNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ + G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 ++ +L + D++ + S + + +R IA I M Sbjct: 515 GANFPETNAMETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + + + D+ +L+SP+ +E+++ +I + + + + Y Sbjct: 623 ETTEVATMIALMKVVDNPYQDIPLAAILRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + +K ++ ++ ++ + I + G + L Sbjct: 683 DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + + E + + + Sbjct: 923 GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824 + G +H L+Q + + +++ T + + + K + Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102 Query: 825 LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874 + I E+P+ T + EV S + + ++I G +D + Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162 Query: 875 QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 ++ I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222 Query: 929 EPKV 932 + Sbjct: 1223 GQHI 1226 >gi|328911095|gb|AEB62691.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens LL3] Length = 1234 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 154/1039 (14%), Positives = 329/1039 (31%), Gaps = 141/1039 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQT----QCIEERFS 67 E + +D + + K + L+ G P LQQ + + + Sbjct: 220 EYVREDAEMALFGAKQKLEKALELTKAPGGPAPRADNILDDLQQIEELISCRHDFKALYE 279 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMF 120 + + + + + + + ++ DL+ KK ++ + M Sbjct: 280 RVPAVTFKRAKAVKGDEFDKVLLDEATDLRNGAKKLIEKLKTDYFTRSPQDHLKSLKDMK 339 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQ 175 + L +E AK++ ++DF DL +L RD V + Sbjct: 340 PVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTARDEEGRRVPSEAAVYYQD 399 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + + +L+DE QDT+L+Q +++ + K+ + LF VGD KQSIY F AEP Sbjct: 400 QFHEVLVDEYQDTNLVQESILQLV-------KSGNEESGNLFMVGDVKQSIYRFRLAEPL 452 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTT 293 L + + + AG I+L +FRS +DIL + +F + + D Sbjct: 453 LFLGKYKRFTEDGEGAG---QKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQA 509 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + S D+ E + + A+ IA I Sbjct: 510 ALKLGASYPPNDAAKTELLLIDSADDADSPEDAEDF----------ETVHWEAKAIAAEI 559 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 ++ + +GK R IQ +DI++L+R + I V N Sbjct: 560 RKLVSSPFKVYDGKTKTHRNIQYRDIVILLRSM----PWAPQLMEELKNQGIPVYANLTS 615 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-- 468 + + + +++ + I + D+ +L+SP+ E+++ I ++ + Sbjct: 616 GYFEAVEVAAALSVLKVIDNPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALK 675 Query: 469 ---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNE 524 + K + + + + S + + G + Sbjct: 676 AYIANGDRHDDLYQKLRIFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQ 735 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHT 579 L + E ++ L + +E+ RA S + VR+MT+H+ Sbjct: 736 RQANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHS 795 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 +KGLE PVVF G K + L + + + K + Sbjct: 796 SKGLEFPVVFTAGLGRSFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKM 855 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RT 680 ++ E R+LYV +TRA ++L + ++ + + Sbjct: 856 RRELLSEELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASS 915 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------------THHPENTPLEREE 728 + D + + ++ + + ++ PE E+ + Sbjct: 916 YLDFIGPALIRHSDMEAHRAPGLLAPEDIAHDPARFHIRMLQQSELLEDSPEERAEEKSK 975 Query: 729 TIKQLMDEQKIPKKLF---------------------------------SPIKNDINEPY 755 +K + + IP +++ + Sbjct: 976 RLKAIQHGEPIPDSFSFDDQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRS 1035 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT--SYCTKNA 813 ++ PS K + +G +H ++Q I + + Sbjct: 1036 LIKPSGDTLLYKRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKE 1095 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC---------PKKDII 863 L ++ + + + + + EV S + + ++ Sbjct: 1096 LLTEEQQDAIDIDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLL 1155 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916 + G ID + + +++ +YKT + + Q+ +Y K ++ Sbjct: 1156 VQGIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQITK 1215 Query: 917 NKSLVCLLIYVSEPKVFII 935 L + V + Sbjct: 1216 TNVKRRALYFFDGGHVLTL 1234 >gi|308173040|ref|YP_003919745.1| ATP-dependent deoxyribonuclease subunit A [Bacillus amyloliquefaciens DSM 7] gi|307605904|emb|CBI42275.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens DSM 7] Length = 1235 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 154/1039 (14%), Positives = 329/1039 (31%), Gaps = 141/1039 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQT----QCIEERFS 67 E + +D + + K + L+ G P LQQ + + + Sbjct: 221 EYVREDAEMALFGAKQKLEKALELTKAPGGPAPRADNILDDLQQIEELISCRHDFKALYE 280 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMF 120 + + + + + + + ++ DL+ KK ++ + M Sbjct: 281 RVPAVTFKRAKAVKGDEFDKVLLDEATDLRNGAKKLIEKLKTDYFTRSPQDHLKSLKDMK 340 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQ 175 + L +E AK++ ++DF DL +L RD V + Sbjct: 341 PVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTARDEEGRRVPSEAAVYYQD 400 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + + +L+DE QDT+L+Q +++ + K+ + LF VGD KQSIY F AEP Sbjct: 401 QFHEVLVDEYQDTNLVQESILQLV-------KSGNEESGNLFMVGDVKQSIYRFRLAEPL 453 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTT 293 L + + + AG I+L +FRS +DIL + +F + + D Sbjct: 454 LFLGKYKRFTEDGEGAG---QKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQA 510 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + S D+ E + + A+ IA I Sbjct: 511 ALKLGASYPPNDAAKTELLLIDSADDADSPEDAEDF----------ETVHWEAKAIAAEI 560 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 ++ + +GK R IQ +DI++L+R + I V N Sbjct: 561 RKLVSSPFKVYDGKTKTHRNIQYRDIVILLRSM----PWAPQLMEELKNQGIPVYANLTS 616 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-- 468 + + + +++ + I + D+ +L+SP+ E+++ I ++ + Sbjct: 617 GYFEAVEVAAALSVLKVIDNPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALK 676 Query: 469 ---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNE 524 + K + + + + S + + G + Sbjct: 677 AYIANGDRHDDLYQKLRIFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQ 736 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHT 579 L + E ++ L + +E+ RA S + VR+MT+H+ Sbjct: 737 RQANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHS 796 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 +KGLE PVVF G K + L + + + K + Sbjct: 797 SKGLEFPVVFTAGLGRSFNMMDLNKPYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKM 856 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RT 680 ++ E R+LYV +TRA ++L + ++ + + Sbjct: 857 RRELLSEELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASS 916 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------------THHPENTPLEREE 728 + D + + ++ + + ++ PE E+ + Sbjct: 917 YLDFIGPALIRHSDMEAHRAPGLLAPEDIAHDPARFHIRMLQQSELLEDSPEERAEEKSK 976 Query: 729 TIKQLMDEQKIPKKLF---------------------------------SPIKNDINEPY 755 +K + + IP +++ + Sbjct: 977 RLKAIQHGEPIPDSFSFDDQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRS 1036 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT--SYCTKNA 813 ++ PS K + +G +H ++Q I + + Sbjct: 1037 LIKPSGDTLLYKRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKE 1096 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC---------PKKDII 863 L ++ + + + + + EV S + + ++ Sbjct: 1097 LLTEEQQDAIDIDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLL 1156 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916 + G ID + + +++ +YKT + + Q+ +Y K ++ Sbjct: 1157 VQGIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQITK 1216 Query: 917 NKSLVCLLIYVSEPKVFII 935 L + V + Sbjct: 1217 TNVKRRALYFFDGGHVLTL 1235 >gi|167765657|ref|ZP_02437710.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1] gi|167712632|gb|EDS23211.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1] gi|291559893|emb|CBL38693.1| recombination helicase AddA, Firmicutes type [butyrate-producing bacterium SSC/2] Length = 1188 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 173/1011 (17%), Positives = 353/1011 (34%), Gaps = 129/1011 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D I + + L++ G P L+ +++A + FS Sbjct: 214 ILRDARFSIDGAYDTIQEALELALSPGGPYFYEKTLRKDLEIIIKIKEA-------QTFS 266 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---------- 117 L F+ + P+ + ++ ++ L+++ K +++ + D Sbjct: 267 ELCESFVKME-KPRLSGRKKKTDEIDEMLQDQCKYERNQAYNLLDDLKAAYFYENESEIF 325 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL------KKRDVSA 167 ++ + L + Y+E KK ++DF+D+ +LL + V + Sbjct: 326 HELRRIKSPLKGLIDLTRKFMIRYDEKKKNENIMDFDDMEHFALELLIDHYDEEGNPVPS 385 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + I IDE QD++ IQ ++RS++++ G +F VGD KQSIY Sbjct: 386 KIAREKSDGYEEIYIDEYQDSNYIQDAILRSVSKESEGGH-------NMFMVGDVKQSIY 438 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 SF A P+ L + Q++ G+++ +IEL +FRS +++LT V+ VF + Sbjct: 439 SFRLARPELFLEKYHGYQQK----GEEYQLIELRNNFRSRSEVLTFVNDVFYQIMHEDLG 494 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + T V L + + + S +E + + AR Sbjct: 495 NIEYTQN-------------VALVPTMEFEQGCDAQTELLLLESNEVKDSEEDAVILEAR 541 Query: 348 RIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 IA I MI + N R + DI++L+R K + + + Sbjct: 542 MIATRIHEMIDGEDPMMVTGKDEEGNMILRKAKYSDIVILLRSMKTNA---EVIQKELMN 598 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 I N++ D + I+ L++L + + D+ +L+SP+ SE+++ ++ Sbjct: 599 AGIPAFANNQKGYFDTVEIRTLLSLLSVVDNIYMDIDLAAVLRSPMIGMSEEELGRLKVD 658 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-I 518 E +++YE + + + K + ++ + L + L L Sbjct: 659 -GEKDSLYECLCETKDKM-EKSKKALELLDLLRDAKTYLPLTQLIWLALEKSGYYHYAGA 716 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVR 573 G + + + E + L + +EQ S + + VR Sbjct: 717 MPQGKKRQGNILMLVEQAKAFESSQIKGLFHFVRFIEQCREYDMDYGEANTMSEDQDLVR 776 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I ++H +KGLE P+VF+ + M + +++ + + + Sbjct: 777 ISSIHKSKGLEYPIVFVSKIHQKFNLRDGNGSMIFHGDYFIGADHIDPVYRTRKKTILKN 836 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----------KKSNQRTWYD 683 + + + + E R+LYV MTRA ++LI+ + + + R+++D Sbjct: 837 LIKNQMTRESLGEELRVLYVAMTRAKEKLILTGIKKDDIDWNAKGEVTAIDRLSGRSYFD 896 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL--EREETIKQLMDEQKIPK 741 + + + ++ W H N + ER + + + + Sbjct: 897 WIKKALPMIPKQDYRLKIYTLEDLLWQQEGNELLHEMNRQIFYERLNDQIPNENVKALKE 956 Query: 742 KLFSPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSDNQT 779 +N+ L S + K + Sbjct: 957 SFAYHYRNEAETKGRLKYSVSEIKRMSQAADTEEVMYSSVFMEKEKRIPSFVKKTERISA 1016 Query: 780 FNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 ++G IIHK+ +++ I + + KL E I L + + Sbjct: 1017 ASKGTIIHKVFELLDFSKDYTMKSLNEDIERWISL-GKLKKEYEKVIYRKEILALTRSEL 1075 Query: 837 MTTAMSCD----SYSEVSVSGKINCPKKD--------IIISGRIDQISISQQNIFIFEYK 884 Y E I D +++ G ID + I + +YK Sbjct: 1076 GKRMKEAAQKKLLYKERQFVTGIPFSDMDKEAKTDDFVVVQGIIDVYFEEEDKIILVDYK 1135 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 T E + + + AQ+ Y++ L+ + V+ K + Sbjct: 1136 TDRVREGEEDILIRRYRAQMESYQQALEKITGKCVKEIYIYSVTLQKTIPV 1186 >gi|47097165|ref|ZP_00234731.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a F6854] gi|254899032|ref|ZP_05258956.1| hypothetical protein LmonJ_04449 [Listeria monocytogenes J0161] gi|254912827|ref|ZP_05262839.1| ATP-dependent nuclease [Listeria monocytogenes J2818] gi|254937154|ref|ZP_05268851.1| ATP-dependent nuclease [Listeria monocytogenes F6900] gi|47014470|gb|EAL05437.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a F6854] gi|258609758|gb|EEW22366.1| ATP-dependent nuclease [Listeria monocytogenes F6900] gi|293590824|gb|EFF99158.1| ATP-dependent nuclease [Listeria monocytogenes J2818] Length = 1235 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 155/1024 (15%), Positives = 342/1024 (33%), Gaps = 130/1024 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + ++ + E P L + Q L + + + + Sbjct: 226 IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + + + T + K+ + +++ ++ KK R+ N + Sbjct: 285 SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K A++ E K++ VLDF DL +L D ++ + ++ Sbjct: 345 KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ + G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 ++ +L + D++ + S + + +R IA I M Sbjct: 515 GANFPETNAMATELLLIDMKTEDTETEDEL--------SPQELQKNQVESRVIAMKIREM 566 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIYDKKLKQNRPIQYRDIIILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + + + D+ +L+SP+ +E+++ +I + + + + Y Sbjct: 623 ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + +K ++ ++ ++ + I + G + L Sbjct: 683 DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + + E + + + Sbjct: 923 GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824 + G +H L+Q + + +++ T + + + K + Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102 Query: 825 LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874 + I E+P+ T + EV S + + ++I G +D + Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162 Query: 875 QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 ++ I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222 Query: 929 EPKV 932 + Sbjct: 1223 GQHI 1226 >gi|225570785|ref|ZP_03779808.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053] gi|225160247|gb|EEG72866.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053] Length = 1204 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 163/1007 (16%), Positives = 325/1007 (32%), Gaps = 106/1007 (10%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT-----LQQASQTQC 61 L + ELI + + S + + + ME P++ ++A +Q + Sbjct: 207 LESSTYMELIRRQIKLYMADAESLTEEALGVCMEPDGPSVYEEALLADGGIVQSFLAAKS 266 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 EE + T+ + +++E ++++KK+ ++ + + Sbjct: 267 YEELYEASGRIKWTKLKANRDKTVSEEKAALVKAARDEVKKTVNDVAAQYFYQAPDGVLE 326 Query: 122 -------STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK----KRDVSAWIR 170 + +L A +EE K+ ++DF D+ +L + Sbjct: 327 DMALCKKAMAVLASLVDQFAARFEEQKRTQNMIDFSDMEQYALQILAVKEGDSFAPTAVA 386 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + Q I+IDE QD++LIQ ++ +F VGD KQSIY F Sbjct: 387 GEYQQRFREIMIDEYQDSNLIQETIL-------TSVSTVSQGKNNIFMVGDVKQSIYRFR 439 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288 + P+ + + + I+L +FRS +++L V+ +F G+ Sbjct: 440 LSRPELFMEKFHTYDTK----DSSRQRIDLHKNFRSRSEVLETVNYIFEQIMTPALGGIR 495 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 D + + +++ + ++ P + + AR Sbjct: 496 YDDEAALYTGADYGDGGEESSNNTEILLVDTDLSPFADDEKKEKKEAAPSD--RELEARA 553 Query: 349 IAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 IA I ++ T + G R + DI++L R K + + + N I Sbjct: 554 IAGRIRKLLDTQKVLDKAAGTYRKARYSDIVILTRSVKG---FSDVFSEVLNKEGIPTYA 610 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---T 463 R + I L+ R + +++ D+ +LKSP +++++ I + + Sbjct: 611 GTREGYFETQEIGVLLDYLRVLNNRKQDIPLAAVLKSPFLGLTDEEMADIKNKAGDLPFH 670 Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFG 522 E V Y + + + + + + H+ +IL G Sbjct: 671 EAVPAYASREETAAARRLKACLDMMEHFRKKVPYTPIHELLHMILKETGYGDYTAAMPGG 730 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L E SY L I +EQ + VRIMT+ Sbjct: 731 EQRKANLKMLAEKAKAFESTSYKGLFHFIRYIEQLQKYDVDYGEASLEDEQSDTVRIMTI 790 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE P+VF+ G Q + + L ++KS + + + K Sbjct: 791 HKSKGLEFPIVFVSGMGKQFNMMDARSSVVLHARLGVGLDAVDTELRTKSPSLLKRVIQK 850 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---------------------KS 676 + E R+LYV +TRA ++LI+ + +K ++ Sbjct: 851 EEALDSLGEELRVLYVALTRAKEKLIVTGAVKNAGKKMDSYGLTKRRSERQLSFTQLGRA 910 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER--EETIKQLM 734 + + +E I+L + + A E+ + L R E + Sbjct: 911 GSYLDWILPAMMRRTEEIPVDIELVTAKDLVRESAGEYIRNRLTAEMLRRWDTERVYDGQ 970 Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---------------------TNLESL 773 I ++ +++ L + + K + Sbjct: 971 MHTLIEEQFSYEYPYSLSKNRKLKYTVSELKKRAYMAEEAGELLYEEEEVVPLIPEFLKE 1030 Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRL 831 + +RG H+LL+++ +H + + + + I Sbjct: 1031 GEELTGASRGTAYHRLLELLDFTADHADASLKAEIIRLRDEGKMTADMAECIRTEDILGF 1090 Query: 832 LENPMMTTAMSC----DSYSEVSV--------SGKINCPKKDIIISGRIDQISISQQNIF 879 L Y E + I++ G ID + Sbjct: 1091 LNCGAGRRMREAAGNQRLYKEQPFVLGTDAREMYPDEAEGELILVQGIIDVYFEEADGLV 1150 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + +YKT + + AQL Y + L+ K + +IY Sbjct: 1151 VLDYKTDRVKSAG--ELKEKYHAQLDYYARALEQI-TGKHVKEKIIY 1194 >gi|319650046|ref|ZP_08004195.1| AddA protein [Bacillus sp. 2_A_57_CT2] gi|317398227|gb|EFV78916.1| AddA protein [Bacillus sp. 2_A_57_CT2] Length = 1250 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 158/1044 (15%), Positives = 331/1044 (31%), Gaps = 139/1044 (13%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERF 66 + +D+ + + L+ G P L TL +A + + Sbjct: 223 SLLEDIDLQLKGARQLLEYGLELTKLPGGPAPRAENFIADLHVVNTLIEA-KNDSWPMLY 281 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119 + S+ + T + N + + +K+ L+++ KK + +M Sbjct: 282 EAMQSWSFGRAKTCKGNDYDEGLVEKAKKLRDQAKKIITGLQEELFFRKQESFMRDMAEM 341 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174 + ++L K + +++ K + ++DF DL ++L D + Sbjct: 342 KPHIESLVSLVKEFSIRFDQVKTEKGLVDFADLEHFCLEILSSSDEEGRLLPSEAALACR 401 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + +L+DE QDT+++Q +++ +T D LF VGD KQSIY F AEP Sbjct: 402 NQFKEVLVDEYQDTNMVQEAILQLVTADS-------EENGNLFMVGDVKQSIYRFRLAEP 454 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292 L + + AG I+L +FRS ++L + +F + D Sbjct: 455 NLFLSKYTRFGRDGEEAGL---RIDLARNFRSRKEVLHGTNYIFKQIMGTSVGEIEYDQA 511 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + + + + + + P+ ES FDS + + + + AR +A Sbjct: 512 AELIKGAPYSESQEHPVEIAIIDLEGNEKNEPEPESMDEGFDS-EELAQSQLEARFMASK 570 Query: 353 ISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I +IG N K R + +DI++L+R P I V N Sbjct: 571 IKEIIGNRKEVYNTKTESGRPAKYRDIVILLRSMTWAP----QIMEEFKQQGIPVYANLS 626 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + + +M+L + I + D+ +L+SP+ +E+++ +I Sbjct: 627 SGYFEATEVAIMMSLLKVIDNPYQDIPLASVLRSPILGLTEEELAQIRIHNKRGSFYEAL 686 Query: 470 IQKFANCG-------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRF 521 N K + + + +A+ S + + + Sbjct: 687 TSFCRNDPTLETEELYEKVRPFFDQLKDWRVMARQGSLSELIWHLYRETRFYDFVGGMPG 746 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576 G + L + + E S+ L + +E+ RA + VR+MT Sbjct: 747 GKQRQANLRALYDRARQYEATSFRGLFRFLRFIERMRDRGDDLGAARALGEQEDVVRLMT 806 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H++KGLE P VF+ + K + + + Sbjct: 807 IHSSKGLEFPFVFIAGLARNFNTMDLKKPFLLDKEFGFAAKYVNAEKRISYPSLPQIAFK 866 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677 + K E R+LYV +TRA ++L + ++++K +++ Sbjct: 867 RKKKMEMLAEEMRVLYVALTRAKEKLFLVSSVKSADKKLNQWLQASEHKEWLLNEYDRAS 926 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI------- 730 ++ D + S + ++ ++ T ++ EE Sbjct: 927 ANSYLDWIGPSLVRHRDCEALRGEGPVHPLVPAEILEHPSCWNITIIKSEEAAVLSEEAN 986 Query: 731 -------------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---- 767 D+ + K + S + + + Sbjct: 987 EGETDLLQLVYEGKPVPAESAYKDKVEEQLSWKYSFKQAAQARSKQSVSEVKRQREIFSE 1046 Query: 768 -----------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810 RG +H ++Q I + + Sbjct: 1047 EDSGTELIRKINKPLLGRPRFMQEKSLSPAERGTAMHAVMQHIDFSRPATVETISSKMAE 1106 Query: 811 -KNAKLWPAKEYKNLLLS-ITRLLENPMMTTA-MSCDSYSEVSVSGKINC---------P 858 +L +++ ++ I + E + + E+ S Sbjct: 1107 MLQNELLTEEQHASIEPQLIVQFFETELGQRIVQAKSVRREIPFSLSFPAREIYSDWKGE 1166 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTH----HHVPQEIEHIP---YTHIAQLSIYEKIL 911 + ++I G +D + +Q + + +YKT E P + Q+ +Y + L Sbjct: 1167 DETVLIQGIVDCVIEDEQGLVLLDYKTDGISGRFKGGFAEAKPVLENRYKVQIDMYTRAL 1226 Query: 912 KDSYPNKSLVCLLIYVSEPKVFII 935 + + L + + Sbjct: 1227 EQILKREVNERYLFFFDGAHTLKL 1250 >gi|315304458|ref|ZP_07874741.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596] gi|313627172|gb|EFR96022.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596] Length = 1236 Score = 393 bits (1008), Expect = e-106, Method: Composition-based stats. Identities = 158/1027 (15%), Positives = 341/1027 (33%), Gaps = 129/1027 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 I + + + +D+ + + +T P L + L Q E+ Sbjct: 226 IKEAIELRIHQTKNDLLTAIDYASDTDGPAPYLDTLEGDLAQINMLFQMDWN-SWEDVKI 284 Query: 68 LLSSFFLTQKFTPQKN--------IITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYK 118 + S + T + T++ + ++K L + ++ + K Sbjct: 285 SIESVDFKRLPTLKNKSDYDEEYVEQTKKFRDAAKKEIKNVLIEWFSR-NEVNYLADLEK 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 M + A L K ++ E K+K VLDF DL +L K + + ++ Sbjct: 344 MKPNIKALSELVKKFAQNFFEEKQKRGVLDFNDLEHLALKILLKDGTPSEVAKSYQKQFK 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +LIDE QDT+++Q ++ +T + + LF VGD KQSIY F AEP + Sbjct: 404 EVLIDEYQDTNMVQEIILMLVT-------TMNGTKGNLFMVGDVKQSIYRFRLAEPTLFM 456 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIR 296 + + Q+ T+ G I+L +FRS ++L V + +F + + + D+ + Sbjct: 457 TKYQAYQQDGTSGGI---RIDLSRNFRSRKEVLDVTNFIFHQLMDNKVAEIDYDNAAELT 513 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 + + + + + S + + AR IA + M Sbjct: 514 LGAHFPESKDMATELLLIDMKTEEKETEDDAL------SPQELQKNQVEARAIALKVREM 567 Query: 357 IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R I+ +DI++L R P I + I N+ Sbjct: 568 IDNKFPIYDKKMQQNRPIEYRDIVILARAMTSAPDIEEAMK----LQNIPFYANNNSGYF 623 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + I + D+ +L+SP+ +E+++ +I + + + + + Sbjct: 624 ETTEVATMIALLKVIDNPYQDIPLAAVLRSPIIGLTEEELGQIRLAKKKGYFFDALRAFK 683 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K IK ++ ++ + I + G + L Sbjct: 684 DNVISEAADKISEFIKQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 743 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + S + VR+MT+H +KGLE Sbjct: 744 RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLSEKEDVVRMMTIHASKGLE 803 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 804 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASAYRDIEKMIVYPTIMQQAMKQKKMREMI 863 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 864 AEEMRVLYVALTRAEEKLILTATVPDFEKTSKQWLQVAKEKETILPAAIRARAKCYLDWI 923 Query: 686 YDSFHNDERVKKI-------KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 + K++ L ++ I E T +++ ++++ D Q Sbjct: 924 GHALIRHISFKELLCEEGIQPLPTDMSLQIEIKTXXMLLSSEITESKQDNWLEKVRDHQP 983 Query: 739 IP----------KKLFSPIKNDINEPYILNPSTIDTKG---------------------- 766 +P + + K+++ S + K Sbjct: 984 VPVQSAYKDEIERFMNYQYKDEVATEIRAKQSVTELKRQFTLQDSWSDTTLLKEFQKVSL 1043 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824 + G +H L+Q + + + + + K + Sbjct: 1044 DRPKFLQQNKLSATEVGTAMHTLMQAVSLESKPSVGEVKQLLQKMREKDILTEAQVKAIN 1103 Query: 825 LLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP--------KKDIIISGRIDQISIS 874 + I E+ + + EV S + + ++I G +D + Sbjct: 1104 IEQILAFFESELGEKVLLEKDHVKREVPFSYLLPVAKLYKQANIDEHVLIQGVVDSMIEQ 1163 Query: 875 QQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +I + +YKT + + + + Q+ +Y + ++ + L + Sbjct: 1164 EDSIILIDYKTDKITGRYADWGEAEKVMKNRYQIQIKLYAEAIQAISGKRVSEAYLYFFD 1223 Query: 929 EPKVFII 935 + I Sbjct: 1224 GQHMCRI 1230 >gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466555|sp|A0AL18|ADDA_LISW6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116742576|emb|CAK21700.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1235 Score = 393 bits (1008), Expect = e-106, Method: Composition-based stats. Identities = 161/1024 (15%), Positives = 326/1024 (31%), Gaps = 130/1024 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQT-------Q 60 I +D+ S + + + E P L + TL S T + Sbjct: 226 IKEDIELRINQAKSYLLNAIEYASENNGPAPYLETLENDLAQINTLSNISWTNWQDVKLR 285 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKM 119 F + S + + T+ + ++K L + + KM Sbjct: 286 VESMDFKRIPSLKNKSDYDEEYVEETKRFRDAAKKEIKNVLVDWFSR-EETNYLADLEKM 344 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K ++ E K++ VLDF DL +L K DV + + ++ Sbjct: 345 KPDIKTISELVKNFANNFFEEKQRRGVLDFNDLEHLALKILLKNDVPSDVAKSYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++ +T N+ S LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILLLVT-------NSEESKGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ G I+L +FRS ++L + +F + + D + Sbjct: 458 KYQEYQQNGEGEGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHVAEIDYDEAAELTL 514 Query: 298 RS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 + +L + ++++ + S + + AR IA I M Sbjct: 515 GANFPKSNHMATELLLIDMKSNENESEDEL--------SPQELQKNQVEARAIATKIREM 566 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I ++ Sbjct: 567 IDNKFPIYDKKLQQNRSIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYASNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + I + D+ +L+SP+ +E+++ +I + + + + Y Sbjct: 623 ETTEVATMIALLKVIDNPYQDIPLAAVLRSPIVGLNEEELGQIRMAKKKGYFFDALLAYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + + I ++ ++ + I + G + L Sbjct: 683 DITVSAAADRISDFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ ++ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTAFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIISGLSKKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVSNQKETILPASIRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIA-----------------YEWSTHHPENTPLEREE 728 ++ K + I E + E Sbjct: 923 GNTIIRHTSFKDLLCEERIQTLPTEMKLQIEIKTKEMFLTTELEEHKADNWLENVKAHEP 982 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG---------------------- 766 Q + +I + + K+ S + K Sbjct: 983 VPVQSAYKDEIERFMNYKYKDVAATEIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + G +H L+Q + P K + + L A+ Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLTYKPSEKDLTSLLQSMQEKDILTEAQIKAIN 1102 Query: 825 LLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP--------KKDIIISGRIDQISIS 874 + I ++P+ T + S EV S + ++ ++I G +D + Sbjct: 1103 IKQIMGFFDSPLGETVLQKSDQVKREVPFSYLLPVAKLYKQSDLEEHVLIQGVVDSMIEE 1162 Query: 875 QQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1163 EDAITLIDYKTDKIEGRYANWEAAEKVMKERYQIQIKLYAEAIQAITGKKVSNAYLYFFD 1222 Query: 929 EPKV 932 + Sbjct: 1223 GQHI 1226 >gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14911] gi|89087181|gb|EAR66296.1| AddA [Bacillus sp. NRRL B-14911] Length = 1254 Score = 393 bits (1008), Expect = e-106, Method: Composition-based stats. Identities = 156/1040 (15%), Positives = 324/1040 (31%), Gaps = 139/1040 (13%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPT-------ILKKAQTLQQASQTQCIEERFSLLSS 71 D+ + + L+ G P +A A+ + Sbjct: 230 DIGLQLEGARQLLENALELAKTPGGPAPRAENYMDDIRAVETLIAANNDSWSSLNEAMQL 289 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KMFKSTL 124 + + + + ++ K++ ++K KK + +M Sbjct: 290 WSFGRAKNCKGDEYDPDLVKQAQKYRDKAKKMIQDLQAEFFSRRPESFIRDIGEMKPHID 349 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS-------AWIRYKIDQEI 177 + L + + + K + ++DF DL ++L + Sbjct: 350 VLVRLVRSFSEKFNSVKSEKGLVDFADLEHFCLEILSDPSARKEGAILPSEPALTYRDHF 409 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +L+DE QDT+++Q +++ +T++ LF VGD KQSIY F AEP Sbjct: 410 REVLVDEYQDTNMVQEAILQLVTKEG-------EETGNLFMVGDVKQSIYRFRLAEPNLF 462 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295 L + G K I+L +FRS ++L + +F + + D + Sbjct: 463 LGKYTRFTVDGEKTGLK---IDLARNFRSRKEVLDGTNFLFKQVMGKKVGEIDYDQAAEL 519 Query: 296 RHRSSRIGQ-VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 +S V+L + + + + + + +D E S AR +A I Sbjct: 520 VKGASYPEDLPYPVELHLIDLDGQEKAESGEADETDAGYDLEDLEQS-QHEARLMAEKIK 578 Query: 355 NMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + G R + +DI++L+R P I + I + N Sbjct: 579 EMLSSGKKVYEPKSGAYRPLMYRDIVILLRSMTWAPQIMEEFK----KQGIPIYANLSSG 634 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 + I +M+L + I + D+ +L+SP+ +E+++ +I + + YE ++ Sbjct: 635 YFEATEITIMMSLLKVIDNPHQDIPLASVLRSPIVGLNEEELAQIRIADKKG-SYYEAMK 693 Query: 472 KFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEV 525 F K + I E +A+ + + G + Sbjct: 694 AFCETKKSGDLYDKVKPFFLDIAEWRSMARKGGLSELIWQLYRDTHFYDFAGGMPGGKQR 753 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580 L + + E+ S+ L + +E+ RA + VR+MT+H++ Sbjct: 754 QANLRALYDRARQYEETSFRGLFRFLRFIERMRERGDDLGAARALGEQEDVVRMMTIHSS 813 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE PVVF Q + K + + + + K Sbjct: 814 KGLEFPVVFAAGLARQFNTMDLKKTYLLDKEYGFAAKYVNPEKRISYPSLPQLAFKRKKK 873 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTW 681 E R+LYV +TRA + L + +++K ++ ++ Sbjct: 874 MEMLAEEMRVLYVALTRAKEHLFLVASVKNADKKLAGWQQGAKKDSWLLDEYDRAAASSY 933 Query: 682 YDMVYDSFHNDERVKKIK------------------------------LTNSINKDEWIA 711 D + + + ++ + Sbjct: 934 LDWIGSALIRHRDGEPLRSGQEDAAAGSQGEIALHPSSWSVEVRQAAVTPAQDEDSDEAG 993 Query: 712 YEWSTHHPENTPLEREETIKQ-----LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +W E P+ E K+ L + P K ++E + + G Sbjct: 994 EQWIDSVYEGKPVPAESPFKEKIKNSLSWQYSYPSAASHKSKQSVSEMKRQSEVKDEESG 1053 Query: 767 ------------KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814 RG +H ++Q ++ + Sbjct: 1054 SDLVRNLKKPILNRPRFMQEKSMTPAERGTAMHMVMQHADLSNPVTEESIERQLAEMKDR 1113 Query: 815 LWPAKEYKNLLL--SITRLLENPMMTTA-MSCDSYSEVSVSGKINCP---------KKDI 862 E ++ I ++P+ + EV + + ++ + Sbjct: 1114 ELLTDEQVQVIDPALIAGFFQSPLGQRMRKAARIQREVPFNLALPARTAYPDWKGTEEPV 1173 Query: 863 IISGRIDQISISQQNIFIFEYKTH----HHVPQEIEHIP---YTHIAQLSIYEKILKDSY 915 ++ G ID I + + +YK+ + E +P + Q+S+Y K + Sbjct: 1174 LVQGIIDCIFEDEHGTVLLDYKSDSIHGRYTGGFEEAMPVLKRRYDVQISLYAKAYEAIT 1233 Query: 916 PNKSLVCLLIYVSEPKVFII 935 + L + + + Sbjct: 1234 KDPVDERYLFFFDGGHILKL 1253 >gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756] gi|145848238|gb|EDK25156.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756] Length = 1197 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 159/1002 (15%), Positives = 324/1002 (32%), Gaps = 103/1002 (10%) Query: 11 ESYELIYKDLWP----LPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQ 58 E+ E + + I + + + E P L+ + +++ S Sbjct: 203 EAAEAMIRRAKEHVLIRIEEPEKLIRRGLKICEEPDGPYMYADMLEEDLRGIEKIRKCSD 262 Query: 59 TQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + + L++K +K + + +++ +K++ + + Sbjct: 263 FAEMYDAADRFVWKTLSRKKDDSVSAEKRESVKALREQAKKAIAGVKETYFYAPESVWKE 322 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIR 170 + +S ++L K + E K+ ++DF D+ D+L + V + + Sbjct: 323 DMVSAGESVKTLVSLVKLFAEKFAEKKRGRNMIDFNDMERFALDILTEEKNGELVPSAVA 382 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + ++ I+IDE QD++ +Q ++ +F VGD KQSIYSF Sbjct: 383 GEYAKQFEEIMIDEYQDSNFVQETIL-------TSVSGQAEGKNNIFMVGDVKQSIYSFR 435 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288 + P+ +++ I+L +FRS ++L V+ +F G+ Sbjct: 436 LSRPELFMQKYNTYS----LEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIE 491 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 D + + + + + E E+ AR Sbjct: 492 YDDSAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARM 551 Query: 349 IAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 IA I +++ + G+ R +Q KDI++L R K + + I Sbjct: 552 IARRIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWA---EDFSAVLAEEGIPAYS 608 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----H 461 R + + L+ + + + DL +L SPL N +D+ KI H Sbjct: 609 VSREGYFETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVAYPDVPFH 668 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISR 520 E+ +Y + + + + HD T I+ G Sbjct: 669 ESARMYASEEAQDPVLKDRLMRFFSQVDHFRKKVSYTPIHDLLTEIIEETGFGIYISAME 728 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575 G + ++ + E SY L + +EQ + VRIM Sbjct: 729 GGVQRAANVEMLVEKAKAFEGTSYKGLFHFVRYIEQLKKYDVDYGEAGIMDEQADTVRIM 788 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 ++H +KGLE PVVF G Q + M + P ++K+ + + Sbjct: 789 SIHKSKGLEFPVVFAAGMGKQFNTQDTKSSMILHPEWGIGIDKIDLKRRTKAPTFLKKLI 848 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--------SNTSNEKKSNQRTWYDMVYD 687 + E R+LYV +TRA ++LI+ S + ++++D + Sbjct: 849 REEAMYEMWAEEMRILYVALTRAKEKLIMTGVLPDRFIMRSGKDGVITAGAKSYFDWIIP 908 Query: 688 SFHNDERVKKIKLTNS----INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739 + ++E ++ ++ A + + + + +I Sbjct: 909 ALWSEEEEAALEDAPVCIFQYTGNDIGADILQVKSEQLALDVLKHWDVTKVYDPEIRKCL 968 Query: 740 --PKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------------------LLSDNQ 778 P ++ S + + E+ Sbjct: 969 DEQADYVYPYYSEGGMKMKFTVSELKKRKALQEEAGEEMYKEPQTVPLLPRFIKEEETLS 1028 Query: 779 TFNRGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-- 834 +RG HK L+++ E ++ +L + R L Sbjct: 1029 GASRGSAYHKFLELLDFAKEYEADDLEAEVERLAEDGRLSREMAECIETEDMMRFLRTKS 1088 Query: 835 --PMMTTAMSCDSYSEVSVSGKI--------NCPKKDIIISGRIDQISISQQNIFIFEYK 884 M+ A + Y E + + + I++ G ID + + + +YK Sbjct: 1089 GVRMLQAARNRKLYKEQPFVISVNASEIYQGDLSGEKILVQGIIDVYFEEEDGLVVLDYK 1148 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 T + + + + AQL Y L K++ +IY Sbjct: 1149 TDQVKSR--KELVEKYHAQLEYYAHALSQL-TGKTVKEKIIY 1187 >gi|168185692|ref|ZP_02620327.1| recombination helicase AddA [Clostridium botulinum C str. Eklund] gi|169296499|gb|EDS78632.1| recombination helicase AddA [Clostridium botulinum C str. Eklund] Length = 1236 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 159/987 (16%), Positives = 325/987 (32%), Gaps = 124/987 (12%) Query: 56 ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRF 114 S + ++ LS + T + N ++ +K D++ K+K + QD+ K + Sbjct: 266 LSAKTSWDSLYNDLSEVKFGRLRTCR-NCEDKDTQEKVKDIRNKVKKQLQDDIKKKITSY 324 Query: 115 NTYKMFKSTLASL-------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 NT ++ + L Y +AKK+ ++DF D ++L + Sbjct: 325 NTKEIVADLINLYPIMKSLCDLVIEFMNRYSKAKKERGIIDFNDFEHFCLEILSHEE--- 381 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + K+ ++ IL+DE QD++ +Q +I S+ P +F VGD KQSIY Sbjct: 382 -VALKLRKKYIEILVDEYQDSNYVQEAIINSIARR----DQETGDPINVFMVGDVKQSIY 436 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQ 285 F A+P+ + K + L +FRS ++L V+ +F EN Sbjct: 437 RFRQAKPEL---FLKKYSSYLEEESAKERKVNLFKNFRSRKEVLAGVNFIFKQIMSENIG 493 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 L + + ++ + + + + + + + Sbjct: 494 ELEYGDDEALYLGADFEEYEDKSRIGGSIELNLIEKSKEEAKEDEGEEEEILSNI--QVE 551 Query: 346 ARRIAYTISNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 AR +A I+ ++ R I+ +DI++L+R I Sbjct: 552 ARFVAKKINELVNPKMGEPFKVYDNDLKTYRNIEYRDIVILLRSTSSWAPI---FMDEMK 608 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 + I + + + IK +++L + I + D+ + +L+SP+ +F+ +++ I Sbjct: 609 ENLIPAYADVGNGYFETVEIKTMLSLLQIIDNSRQDIPLIAVLRSPIASFTPEELIDIRL 668 Query: 459 QRHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + E + E K ++ + + +F + Sbjct: 669 ENKEGDFYGGLLKIVNSEEKDDTWIKFKRKCNVFLQKLSYWRQKSIHMPIDEFIWYLYME 728 Query: 511 KKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRA 564 + G + L + E+ SY L I+ + + Sbjct: 729 TGYYGYVGALAGGIQRQANLKILFQRARQYEKTSYKGLFNFINFINRLKVSSGDMGSAKI 788 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 N N VRIM++H +KGLE PVV L G K++ L P + Sbjct: 789 LGENDNVVRIMSIHKSKGLEFPVVILSALGKNFNMQDLNKRILYHDELGFGPDYIDLEKR 848 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---- 680 I S L K +K + E R+LYV +TRA ++LI+ N + Sbjct: 849 IAYETVIKSALKKKIKLESLSEEMRILYVALTRAKEKLILTGAVNDIEKSAKKWSYALQG 908 Query: 681 ---------------WYDMVYDSFHNDERVKKIKLTNSIN-------------------- 705 + D + + + ++ I Sbjct: 909 DNYKISQYQVLTGKNYLDWICPVIMRHKDGEVLRKLAGIEIFEKVNLISDDSSWQVTTDN 968 Query: 706 -----------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 + + + + T +E ++L + + + P + E Sbjct: 969 ISAILQDDNKSSEIILEDVKEIENIDETSSYYDEINERLNFKYEYIESSKLPTLLTVTEL 1028 Query: 755 YILNPSTIDTK-----------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 + S++ + + +G +H ++Q I E +N Sbjct: 1029 KRMKNSSMYEDYSRDMYTPKLVKRPMFMEKDRKLKGAEKGTAMHAVMQKINYTDELTIEN 1088 Query: 804 FITSYCTKNAKLWPAKEYKN--LLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPK- 859 T K + KE + I ++ + + + + E ++ + Sbjct: 1089 IKKQIKTMVEKEFITKEQADSVEPERILNFFKSDIGRRLLKAENVKRETPFHMELKSTEI 1148 Query: 860 -----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 ++I+I G ID + + + +YK+ + + E I + Q+ Y Sbjct: 1149 YENLPQEIYDSENIMIQGIIDCYFEEENGVVLLDYKSDYFKKGQEEFIIKKYKVQIEYYA 1208 Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFII 935 + +++ L K I Sbjct: 1209 RAIEELTGKSVKEKYLYLFYGDKEVEI 1235 >gi|217963572|ref|YP_002349250.1| recombination helicase AddA [Listeria monocytogenes HCC23] gi|251764533|sp|B8DF44|ADDA_LISMH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|217332842|gb|ACK38636.1| recombination helicase AddA [Listeria monocytogenes HCC23] gi|307571852|emb|CAR85031.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes L99] Length = 1235 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 156/1024 (15%), Positives = 336/1024 (32%), Gaps = 130/1024 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + + + E P L + Q L + + + + Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + + + T + K+ + +++ ++ KK R+ N + Sbjct: 285 SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K A++ E K++ VLDF DL +L D ++ + ++ Sbjct: 345 KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNGDKASEVAQNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ + G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 + +L + D++ + S + + +R IA I M Sbjct: 515 GAKSPETNAMATELLLIDMKTEDTETEDEL--------SPQELQKNQVESRTIAMKIREM 566 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + + + D+ +L+SP+ +E+++ +I + + + + Y Sbjct: 623 ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLAYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K ++ ++ ++ + I + G + L Sbjct: 683 DITVSETADKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + + E + + + Sbjct: 923 GNATIRHSAFKELLCEEMIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDNWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + G +H L+Q + P + + + L A+ Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLRTMREKDILTDAQIKAIN 1102 Query: 825 LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874 + I E+P+ T + EV S + + ++I G +D + Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYENVDIDERVLIQGVVDSMIEE 1162 Query: 875 QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 ++ I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222 Query: 929 EPKV 932 + Sbjct: 1223 GQHI 1226 >gi|317501978|ref|ZP_07960162.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896658|gb|EFV18745.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium 8_1_57FAA] Length = 1197 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 159/1002 (15%), Positives = 323/1002 (32%), Gaps = 103/1002 (10%) Query: 11 ESYELIYKDLWP----LPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQ 58 E+ E + + I + + + E P L+ + +++ S Sbjct: 203 EAAEAMIRRAKEHVLIRIEEPEKLIRRGLKICEEPDGPYMYADMLEEDLRGIEKIRKCSD 262 Query: 59 TQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + + L++K +K + + +++ +K++ + + Sbjct: 263 FAEMYDAADRFVWKTLSRKKDDSVSAEKRESVKALREQAKKAIAGVKETYFYAPESVWKE 322 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIR 170 + +S ++L K + E K+ ++DF D+ D+L + V + + Sbjct: 323 DMVSAGESVKTLVSLVKLFAEKFAEKKRGRNMIDFNDMERFALDILTEEKNGELVPSAVA 382 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + ++ I+IDE QD++ +Q ++ +F VGD KQSIYSF Sbjct: 383 GEYAKQFEEIMIDEYQDSNFVQETIL-------TSVSGQAEGKNNIFMVGDVKQSIYSFR 435 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288 + P+ +++ I+L +FRS ++L V+ +F G+ Sbjct: 436 LSRPELFMQKYNTYS----LEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIE 491 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 D + + + + + E E+ AR Sbjct: 492 YDDSAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARM 551 Query: 349 IAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 IA I +++ + G+ R +Q KDI++L R K + + I Sbjct: 552 IARRIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWA---EDFSAVLAEEGIPAYS 608 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----H 461 R + + L+ + + + DL +L SPL N +D+ KI H Sbjct: 609 VSREGYFETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVAYPDVPFH 668 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISR 520 E+ +Y + + + + HD T I+ G Sbjct: 669 ESARMYASEEAQDPVLKDRLMRFFSQVDHFRKKVSYTPIHDLLTEIIEETGFGIYISAME 728 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575 G + ++ + E SY L + +EQ + VRIM Sbjct: 729 GGVQRAANVEMLVEKAKAFEGTSYKGLFHFVRYIEQLKKYDVDYGEAGIMDEQADTVRIM 788 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 ++H +KGLE PVVF G Q + M + P ++K+ + + Sbjct: 789 SIHKSKGLEFPVVFAAGMGKQFNTQDTKSSMILHPEWGIGIDKIDLKRRTKAPTFLKKLI 848 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--------SNTSNEKKSNQRTWYDMVYD 687 + E R+LYV +TRA ++LI+ S + ++++D + Sbjct: 849 REEAMYEMWAEEMRILYVALTRAKEKLIMTGVLPDRFIMRSGKDGVITAGAKSYFDWIIP 908 Query: 688 SFHNDERVKKIKLTNS----INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739 + +E ++ ++ A + + + + +I Sbjct: 909 ALWPEEEEAALEDAPVCIFQYTGNDIGADILQVKSEQLALDVLKHWDVTKVYDPEIRKCL 968 Query: 740 --PKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------------------LLSDNQ 778 P ++ S + + E+ Sbjct: 969 DEQADYVYPYYSEGGMKMKFTVSELKKRKALQEEAGEEMYKEPQTVPLLPRFIKEEETLS 1028 Query: 779 TFNRGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-- 834 +RG HK L+++ E ++ +L + R L Sbjct: 1029 GASRGSAYHKFLELLDFAKEYEADDLEAEVERLAEDGRLSREMAECIETEDMMRFLRTKS 1088 Query: 835 --PMMTTAMSCDSYSEVSVSGKI--------NCPKKDIIISGRIDQISISQQNIFIFEYK 884 M+ A + Y E + + + I++ G ID + + + +YK Sbjct: 1089 GVRMLQAARNRKLYKEQPFVISVNASEIYQGDLSGEKILVQGIIDVYFEEEDGLVVLDYK 1148 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 T + + + + AQL Y L K++ +IY Sbjct: 1149 TDQVKSR--KELAEKYHAQLEYYAHALSQL-TGKTVKEKIIY 1187 >gi|331088205|ref|ZP_08337124.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA] gi|330408449|gb|EGG87915.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA] Length = 1197 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 159/1002 (15%), Positives = 324/1002 (32%), Gaps = 103/1002 (10%) Query: 11 ESYELIYKDLWP----LPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQ 58 E+ E + + I + + + E P L+ + +++ S Sbjct: 203 EAAEAMIRRAKEHVLIRIEEPEKLIRRGLKICEEPDGPYMYADMLEEDLRGIEKIRKCSD 262 Query: 59 TQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + + L++K +K + + +++ +K++ + + Sbjct: 263 FAEMYDAADRFVWKTLSRKKDDSVSAEKRESVKALREQAKKAIAGVKETYFYAPESVWKE 322 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIR 170 + +S ++L K + E K+ ++DF D+ D+L + V + + Sbjct: 323 DMVSAGESVKTLVSLVKLFAEKFAEKKRGRNMIDFNDMERFALDILTEEKNGELVPSAVA 382 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + ++ I+IDE QD++ +Q ++ +F VGD KQSIYSF Sbjct: 383 GEYAKQFEEIMIDEYQDSNFVQETIL-------TSVSGQAEGKNNIFMVGDVKQSIYSFR 435 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288 + P+ +++ I+L +FRS ++L V+ +F G+ Sbjct: 436 LSRPELFMQKYNTYS----LEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIE 491 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 D + + + + + E E+ AR Sbjct: 492 YDDSAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARM 551 Query: 349 IAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 IA I +++ + G+ R +Q KDI++L R K + + I Sbjct: 552 IARRIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWA---EDFSAVLAEEGIPAYS 608 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----H 461 R + + L+ + + + DL +L SPL N +D+ KI H Sbjct: 609 VSREGYFETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVAYPDVPFH 668 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISR 520 E+ +Y + + + + HD T I+ G Sbjct: 669 ESARMYASEEAQDPVLKDRLMRFFSQVDHFRKKVSYTPIHDLLTEIIEETGFGIYISAME 728 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575 G + ++ + E SY L + +EQ + VRIM Sbjct: 729 GGVQRAANVEMLVEKAKAFEGTSYKGLFHFVRYIEQLKKYDVDYGEAGIMDEQADTVRIM 788 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 ++H +KGLE PVVF G Q + M + P ++K+ + + Sbjct: 789 SIHKSKGLEFPVVFAAGMGKQFNTQDTKSSMILHPEWGIGIDKIDLKRRTKAPTFLKKLI 848 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--------SNTSNEKKSNQRTWYDMVYD 687 + E R+LYV +TRA ++LI+ S + ++++D + Sbjct: 849 REEAMYEMWAEEMRILYVALTRAKEKLIMTGVLPDRFIMRSGKDGVITAGAKSYFDWIIP 908 Query: 688 SFHNDERVKKIKLTNS----INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739 + ++E ++ ++ A + + + + +I Sbjct: 909 ALWSEEEEAALEDAPVCIFQYTGNDIGADILQVKSEQLALDVLKHWDVTKVYDPEIRKCL 968 Query: 740 --PKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------------------LLSDNQ 778 P ++ S + + E+ Sbjct: 969 DEQADYVYPYYSEGGMKMKFTVSELKKRKALQEEAGEEMYKEPQTVPLLPRFIKEEETLS 1028 Query: 779 TFNRGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-- 834 +RG HK L+++ E ++ +L + R L Sbjct: 1029 GASRGSAYHKFLELLDFAKEYEADDLEAEVERLAEDGRLSREMAECIETEDMMRFLRTKS 1088 Query: 835 --PMMTTAMSCDSYSEVSVSGKI--------NCPKKDIIISGRIDQISISQQNIFIFEYK 884 M+ A + Y E + + + I++ G ID + + + +YK Sbjct: 1089 GVRMLQAARNRKLYKEQPFVISVNASEIYQGDLSGEKILVQGIIDVYFEEEDGLVVLDYK 1148 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 T + + + + AQL Y L K++ +IY Sbjct: 1149 TDQVKSR--KELAEKYHAQLEYYAHALSQL-TGKTVKEKIIY 1187 >gi|313632207|gb|EFR99276.1| ATP-dependent nuclease subunit A [Listeria seeligeri FSL N1-067] Length = 1236 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 150/950 (15%), Positives = 306/950 (32%), Gaps = 111/950 (11%) Query: 79 TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138 + + ++K L ++ + KM L K ++ Sbjct: 305 EEYVEEAKKFRDAAKKEIKNVLIDWFSR-NEVNYLADLEKMKPDIETLSNLVKKFAQNFF 363 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 E K+K VLDF DL ++L K + + ++ +LIDE QDT+++Q ++ Sbjct: 364 EEKQKRGVLDFNDLEHLALNILLKEGAPSDVAKSYQKQFKEVLIDEYQDTNMVQETILGL 423 Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 +T T+ + LF VGD KQSIY F AEP + + + ++ TN G I Sbjct: 424 VTR-------TNETSGNLFMVGDVKQSIYRFRLAEPTLFMAKYQQYRQDGTNGGI---RI 473 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 +L +FRS ++L + +F + Q + D + + + Sbjct: 474 DLSRNFRSRKEVLDATNFIFRQLMDKQVAEIDYDDAAELTLGARFPESQNMSTELLLI-- 531 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQA 373 ++ T S + + AR IA I +M+ + K R IQ Sbjct: 532 ----DMKTEEIEATDDELSPQELQKNQVEARAIAMKIRDMVDNKFPIYDKKMQQNRPIQY 587 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +DI++L R P I + L I N+ + + ++AL + I + Sbjct: 588 RDIVILSRAMTSAPDIEEAMKIL----DIPFYANNNSGYFETTEVATMIALMKVIDNPYQ 643 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHE 490 D+ +L+SP+ E+++ +I + + + + + + K IK ++ Sbjct: 644 DIPLAAVLRSPIVGLKEEELGQIRMAKKKGYFFDAMLAFKDAVNSEAADKISEFIKQLNN 703 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 ++ + I + G + L + + E+ S+ L Sbjct: 704 WRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFR 763 Query: 550 LISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 + +E+ + + VR+MT+H +KGLE PVV + + Sbjct: 764 FVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVAGLSRKFNMRDIYS 823 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 K + + + + + E R+LYV +TRA ++LI+ Sbjct: 824 KSLLDKDYGFASAYRDIEKMIVYPTIMQQAIKQKKIREMIAEEMRVLYVALTRAEEKLIL 883 Query: 665 CKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 + ++ + + D V + K++ I Sbjct: 884 VGTVPDFEKTSKNWLQVAKGKETILPAAVRAKAKCYLDWVGYTLIRHTSFKELLCEELIQ 943 Query: 706 KDEWIAYEWST-----------------HHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + Q + +I + + K Sbjct: 944 TLPTDMVLQIEIKTXXMFLSSEKEGVKQDNWMGNIKAHQPVPVQSAYKDEIKRFMNYQYK 1003 Query: 749 NDINEPYILNPSTIDTKG----------------------KTNLESLLSDNQTFNRGLII 786 ++ + S + K + G + Sbjct: 1004 DEASTEIRAKQSVTELKRQFTLQDSWSDTTLLKEFQKVSLDRPKFLQKNKLSATEVGTAM 1063 Query: 787 HKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842 H L+Q + P + + + L A+ + I E+ + +S Sbjct: 1064 HTLMQAVSLENKPSEEDVKQLLQTMMEKDILTDAQVKAINIDQIIGFFESELGQKVLSEK 1123 Query: 843 CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ--- 891 + EV S + + ++I G +D + + +I + +YKT + Sbjct: 1124 ENVKREVPFSYLLPVEKLDKQANLDEHVLIQGVVDSMIEQEDSIILIDYKTDKIAGRYSG 1183 Query: 892 ---EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938 + + + Q+ +Y + ++ K L + + I Sbjct: 1184 WEVAEKIMKERYQVQIKLYAEAIEAISGKKVSQAYLYFFDGQHICQINTE 1233 >gi|221308901|ref|ZP_03590748.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] gi|221313225|ref|ZP_03595030.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318148|ref|ZP_03599442.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. JH642] gi|221322423|ref|ZP_03603717.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. SMY] gi|255767243|ref|NP_388944.2| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|239938590|sp|P23478|ADDA_BACSU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|225184870|emb|CAB12903.2| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 153/1037 (14%), Positives = 335/1037 (32%), Gaps = 143/1037 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS--- 70 + +D+ + + + + L+ G P L Q + ++ FS L Sbjct: 222 VKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRV 281 Query: 71 -SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKS 122 + + + + + ++ DL+ KK ++ + +M Sbjct: 282 PAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPV 341 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEI 177 + L +E AK++ ++DF DL +L + + ++ Sbjct: 342 IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQF 401 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +L+DE QDT+L+Q +++ +T + LF VGD KQSIY F AEP Sbjct: 402 HEVLVDEYQDTNLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLF 454 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295 L + + + G I+L +FRS ADIL + +F + + D + Sbjct: 455 LSKYKRFTESGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAEL 511 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + ++ T + + D+ + + + + A+ IA I Sbjct: 512 KLGAAYPDNDETETELLLIDNAEDTDASEE----------AEELETVQFEAKAIAKEIRK 561 Query: 356 MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 +I + +GK R IQ +DI++L+R P I R I V N Sbjct: 562 LISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRA----QGIPVYANLTSGY 617 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467 + + + +++ + I + D+ +L+SP+ E+++ I + + Y Sbjct: 618 FEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDY 677 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 ++ K ++ + ++ S + + K G + Sbjct: 678 LAAGDRSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQ 737 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + + E ++ L + +E+ RA S + VR+MT+H++K Sbjct: 738 ANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 797 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF+ G K + L + + + K +++ Sbjct: 798 GLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRR 857 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKI 698 E R+LYV +TRA ++L + ++ + + D + F + + Sbjct: 858 ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYL 917 Query: 699 KLTNSINK-----------------------------------DEWIAYEWSTHHPENTP 723 D+ + Sbjct: 918 DFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEA 977 Query: 724 LEREETIK---QLMDEQKIPKKLFSPIKN---------------------DINEPYILNP 759 + R E + ++ + P + + + + P Sbjct: 978 IRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKP 1037 Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816 + + + +G +H ++Q I + + + K L Sbjct: 1038 ADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LL 1095 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIIS 865 ++ + + I + + + E+ S + + +++ Sbjct: 1096 TEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQ 1155 Query: 866 GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 G ID + ++ +++ +YK+ + + Q+ +Y K ++ K Sbjct: 1156 GIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTK 1215 Query: 919 SLVCLLIYVSEPKVFII 935 C L + + + Sbjct: 1216 VKGCALYFFDGGHILTL 1232 >gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis] gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 152/1037 (14%), Positives = 334/1037 (32%), Gaps = 143/1037 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS--- 70 + +D+ + + + + L+ G P L Q + ++ FS L Sbjct: 222 VKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRV 281 Query: 71 -SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKS 122 + + + + + ++ DL+ KK ++ + +M Sbjct: 282 PAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPV 341 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEI 177 + L +E AK++ ++DF DL +L + + ++ Sbjct: 342 IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQF 401 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +L+DE QDT+L+Q +++ +T + LF VGD KQSIY F AEP Sbjct: 402 HEVLVDEYQDTNLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLF 454 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295 L + + + G I+L +FRS ADIL + +F + + D + Sbjct: 455 LSKYKRFTESGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAEL 511 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + ++ T + + D+ + + + + A+ IA I Sbjct: 512 KLGAAYPDNDETETELLLIDNAEDTDASEE----------AEELETVQFEAKAIAKEIRK 561 Query: 356 MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 +I + +GK R IQ +DI++L+R P I R I V N Sbjct: 562 LISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRA----QGIPVYANLTSGY 617 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467 + + + +++ + I + D+ +L+SP+ E+++ I + + Y Sbjct: 618 FEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDY 677 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 ++ K ++ + ++ S + + K G + Sbjct: 678 LAAGDRSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQ 737 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + + E ++ L + +E+ R S + VR+MT+H++K Sbjct: 738 ANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARGLSEQEDVVRLMTIHSSK 797 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF+ G K + L + + + K +++ Sbjct: 798 GLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRR 857 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKI 698 E R+LYV +TRA ++L + ++ + + D + F + + Sbjct: 858 ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYL 917 Query: 699 KLTNSINK-----------------------------------DEWIAYEWSTHHPENTP 723 D+ + Sbjct: 918 DFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEA 977 Query: 724 LEREETIK---QLMDEQKIPKKLFSPIKN---------------------DINEPYILNP 759 + R E + ++ + P + + + + P Sbjct: 978 IRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKP 1037 Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816 + + + +G +H ++Q I + + + K L Sbjct: 1038 ADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LL 1095 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIIS 865 ++ + + I + + + E+ S + + +++ Sbjct: 1096 TEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQ 1155 Query: 866 GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 G ID + ++ +++ +YK+ + + Q+ +Y K ++ K Sbjct: 1156 GIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTK 1215 Query: 919 SLVCLLIYVSEPKVFII 935 C L + + + Sbjct: 1216 VKGCALYFFDGGHILTL 1232 >gi|16801431|ref|NP_471699.1| hypothetical protein lin2368 [Listeria innocua Clip11262] gi|81595220|sp|Q929A9|ADDA_LISIN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|16414891|emb|CAC97595.1| lin2368 [Listeria innocua Clip11262] Length = 1235 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 153/1023 (14%), Positives = 332/1023 (32%), Gaps = 128/1023 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 I +D+ S + + + E P A + Sbjct: 226 IKEDIQLRINQAKSYLLTAIDYANENNGPAPYLSTLENDLAQINTLSSISWDNWQDVKFG 285 Query: 76 QKF-TPQKNIITQEINKKSPDLKEKLKKSQDE--------FIKIRDRFN------TYKMF 120 + ++ + + E+ KK +D I R KM Sbjct: 286 FESIDFKRIPALKNKADFDEEYVEEAKKFRDAAKKEVKNVLIDWFSREEENYLSDLEKMK 345 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 L K ++ E K++ VLDF DL +L K + + ++ + Sbjct: 346 PDIKTLSELVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKNGAPSDVANSYKKQFKEV 405 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 LIDE QDT+++Q ++ +T N++ + LF VGD KQSIY F AEP + + Sbjct: 406 LIDEYQDTNMVQETILLLVT-------NSNDTKGNLFMVGDVKQSIYRFRLAEPTLFMAK 458 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHR 298 + Q+ +G I+L +FRS ++L + +F + + D + Sbjct: 459 YQEYQQDGEGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDEAAELTLG 515 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 +S + + + + + + S + + +R IA I MI Sbjct: 516 ASFPEANNMATELLLIDMKSEEKESEDEL-------SPQELQKNQVESRAIATKIREMID 568 Query: 359 TDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + K R IQ +DI++L R P + + I N+ + Sbjct: 569 NKFPIYDKKLQQNRPIQYRDIVILARAMTSAPDMEEAMK----IKDIPFYANNNSGYFET 624 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 + ++AL + I + D+S +L+SP+ +E+++ +I + + ++ + + + Sbjct: 625 TEVATMIALMKVIDNPYQDISLAAVLRSPIIGLNEEELGQIRMAKKKG-YFFDAMLAYKD 683 Query: 476 ----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 +K I ++ ++ + I + G + L Sbjct: 684 ITVSDAANKISRFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLR 743 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 744 ALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEF 803 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVV + + K + + + + + Sbjct: 804 PVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKKYREMIA 863 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVY 686 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 864 EEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVSNQQETILPAAIRAKAKCYLDWIG 923 Query: 687 DSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPENT 722 ++ K++ LT+ + K++ + + + Sbjct: 924 NATIRHSHFKELLCEEKIKTLPTDMKLQVEIKTKEMFLTDDLEKEKSDNWMENVKAHKQV 983 Query: 723 PLE---------------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 P++ ++E + +Q + + D + Sbjct: 984 PVKSPYKDEIERFMHYQYKDEEATGIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSLD 1043 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAKLWPAKEYKNL-L 825 + G +H L+Q + + K+ ++ + + + K + + Sbjct: 1044 RPKFLQQNKLSATEIGTAMHTLMQAVPLDDKPTEKDLVSLLQLMREKDILTEAQIKAINV 1103 Query: 826 LSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQ 875 I E+ + T + EV S + + ++I G +D + + Sbjct: 1104 NQIIAFFESALGKTVLQKKDKVKREVPFSYLLPAAKLYNQTNLDEHVLIQGVVDSMIEEE 1163 Query: 876 QNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 +I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1164 DSIILIDYKTDKIEGRYDNWEAAEKVMKERYQIQIKLYAEAIQAISRKKVSHAYLYFFDG 1223 Query: 930 PKV 932 + Sbjct: 1224 QHI 1226 >gi|294497408|ref|YP_003561108.1| ATP-dependent nuclease subunit A [Bacillus megaterium QM B1551] gi|294347345|gb|ADE67674.1| ATP-dependent nuclease, subunit A [Bacillus megaterium QM B1551] Length = 1245 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 161/1006 (16%), Positives = 331/1006 (32%), Gaps = 126/1006 (12%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 L + L AS+ + + + T+ + ++ +L++ Sbjct: 257 RAVNAEEDLAQIHRLISASK-HSFADLHEEMQNLNFTRLKPCKGEAYDSQLLDDFGELRK 315 Query: 99 KLKKSQDEFIKIRDRFNTY-------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151 K K S ++ + KM + L + YE KK+ ++DF D Sbjct: 316 KAKTSLEKLHADLFSRPLHGYMADFEKMKPVIETLIFLVQRFGERYEHMKKEKGLVDFSD 375 Query: 152 LIINTNDLLKKRDV----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 L +L ++ + I K + +L+DE QDT+++Q +I+ +T D Sbjct: 376 LEHYCLQILSVKEDGVLKPSSIAQKYRTQFEEVLVDEYQDTNMVQETLIKLVTRDS---- 431 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 LF VGD KQSIY F AEP L + + + G I+L +FRS Sbjct: 432 ---EEQGNLFMVGDVKQSIYRFRLAEPFLFLTKYKRFTQDGRQFG---KRIDLNKNFRSR 485 Query: 268 ADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 + +L + +F+ E ++ D +++ +S G + ++ + + Sbjct: 486 SQVLDATNFIFNQLMDEEVGEIAYDDDASLKLGASYPKVEGMETELLLIAKENAEEGGEE 545 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRK 382 + + S + +A + AR +A I ++ + K R + +D ++L+R Sbjct: 546 ESDSSLVAFSEAELETAQLEARAMARKIKELVQNRFQIYDRKLDIMRNVTYRDFVILLRS 605 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 I + + + N D + +M+L + + + D+ +L+ Sbjct: 606 MPWAAQIMDEFKQE----GVPIYANLSTGYFDATEVMIMMSLLKVVDNPHQDIPLASVLR 661 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQFC 498 SP+ S++++ + ++ + A + + + + A+ Sbjct: 662 SPVVGLSDEELATLRAEQKKGTYYDALKTYLAVSDDEELRDKVKYFYEQLKAWRTQARQS 721 Query: 499 SPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557 S + I + G + L + + E S+ L + +E+ Sbjct: 722 SLSELVWQIYRDTGFFEFVGGLPGGKQRQANLRALYDRARQYEATSFRGLFRFLRFIERM 781 Query: 558 -----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 RA + VR+MT+H++KGLE PVVF+ Q K + L Sbjct: 782 QDRGNDLGAARALGEQEDVVRLMTIHSSKGLEFPVVFVAGLARQFNLMDLNKAYLLDKEL 841 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 + + + K +KK + E R+LYV +TRA ++LI+ + Sbjct: 842 GFGSKYIDPKLRITYPTLLQQTMKKKMKKESMAEEMRVLYVALTRAKEKLILVGTVKDAP 901 Query: 673 EKKSNQRTWYDMVYD---------------------------------------SFHNDE 693 EK + H Sbjct: 902 EKLRQWSSVMAHEDWTLPAHVRRDAKCYLDWIGPSLIRHQNVSHMVEGEVQPAEMIHQHA 961 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---LFSPIKND 750 K+ + + E E H L++ E + + D + + + Sbjct: 962 SSWKLSTLLAGDLAEQPLEEQQHHEELLNALQKHEPVSESSDYKDEVYRRLNWSYDYRVA 1021 Query: 751 INEPYILNPSTID--------------------TKGKTNLESLLSDNQTFNRGLIIHKLL 790 + S + L RG H ++ Sbjct: 1022 SVHRSKQSVSELKRQQQLTDAGGSDDLVRGSKAPLENRPLFLQEKSLTGAERGTATHAVM 1081 Query: 791 QVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-S 845 Q + ++FI S TK L ++ + + L++ + + Sbjct: 1082 QQLPLNKAYTLEMVQDFIQSMVTKE--LLTQEQADAVDANDVADFLDSDIAQGIRTARTV 1139 Query: 846 YSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVP---QEI 893 Y E+ S ++ + I++ G ID + +++ + + ++KT + + Sbjct: 1140 YREMPFSLGVSAKEIYDHWEQEDETILVQGIIDCLYETEEGLVLLDFKTDNISDRFQGDF 1199 Query: 894 EH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 E + + QL +Y K ++ L ++ I Sbjct: 1200 ERAKPFLIDRYRIQLELYAKAIERIVKQPVQHRYLYFLDGGHAVEI 1245 >gi|291483547|dbj|BAI84622.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. natto BEST195] Length = 1232 Score = 390 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 153/1037 (14%), Positives = 334/1037 (32%), Gaps = 143/1037 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS--- 70 + +D+ + + + + L+ G P L Q + ++ FS L Sbjct: 222 VKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRV 281 Query: 71 -SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKS 122 + + + + + ++ DL+ KK ++ + +M Sbjct: 282 PAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPV 341 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEI 177 + L +E AK++ ++DF DL +L + + ++ Sbjct: 342 IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQF 401 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +L+DE QDT+L+Q +++ +T + LF VGD KQSIY F AEP Sbjct: 402 HEVLVDEYQDTNLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLF 454 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295 L + + + G I+L +FRS ADIL + +F + + D + Sbjct: 455 LSKYKRFTESGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAEL 511 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + ++ T + + D+ + + + + A+ IA I Sbjct: 512 KLGAAYPDNDETETELLLIDNAEDTDASEE----------AEELETVQFEAKAIAKEIRK 561 Query: 356 MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 +I + +GK R IQ +DI++L+R P I R + I V N Sbjct: 562 LISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRA----HGIPVYANLTSGY 617 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467 + + + +++ + I + D+ +L+SP+ E+++ I + + Y Sbjct: 618 FEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDY 677 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 + K ++ + ++ S + + K G + Sbjct: 678 LAAGDRNDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQ 737 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + + E ++ L + +E+ RA S + VR+MT+H++K Sbjct: 738 ANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 797 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF G K + L + + + K +++ Sbjct: 798 GLEFPVVFAAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRR 857 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKI 698 E R+LYV +TRA ++L + ++ + + D + F + + Sbjct: 858 ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYL 917 Query: 699 KLTNSINK-----------------------------------DEWIAYEWSTHHPENTP 723 D+ + Sbjct: 918 DFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEA 977 Query: 724 LEREETIK---QLMDEQKIPKKLFSPIKN---------------------DINEPYILNP 759 + R E + ++ + P + + + + P Sbjct: 978 IRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKP 1037 Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816 + + + +G +H ++Q I + + + K L Sbjct: 1038 ADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LL 1095 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIIS 865 ++ + + I + + + E+ S + + +++ Sbjct: 1096 TEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAQEADEPLLVQ 1155 Query: 866 GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 G ID + ++ +++ +YK+ + + Q+ +Y K ++ K Sbjct: 1156 GIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTK 1215 Query: 919 SLVCLLIYVSEPKVFII 935 C L + + + Sbjct: 1216 VKGCALYFFDGGHILTL 1232 >gi|325291019|ref|YP_004267200.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus glycolicus DSM 8271] gi|324966420|gb|ADY57199.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus glycolicus DSM 8271] Length = 1273 Score = 390 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 164/1044 (15%), Positives = 327/1044 (31%), Gaps = 166/1044 (15%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 ++ P+ +S + + ++LS + +Q ++ Sbjct: 254 LQNYIPVLGEDLSHVEELLALSRSGSGHRWDRLLAKMQSVQFSRWPSAGKDA-------- 305 Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYL 133 K + I ++K +L+K ++ + + + L L Sbjct: 306 --DKTKQESVKNIRD---EVKIRLRKIKERIFLTDSAGLSADLKSLYPLMKCLSGLVLDL 360 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDT 188 Y + K VLDF DL +L + D V + + + + IL+DE QD+ Sbjct: 361 GKKYADRKNGKSVLDFNDLEHFCLQVLTQTDEQGNIVPSPVALSYRERFSEILVDEYQDS 420 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +Q +I LT +F VGD KQSIY F A P+ L + A Sbjct: 421 NDVQEFMIGMLTGK---------DNPNIFMVGDVKQSIYRFRQARPELFLEKYNSY---A 468 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI------ 302 + G I L +FRS +IL V+ +F + + T Sbjct: 469 SERGGSDRKILLFKNFRSRPEILNAVNFLFKQIMSEKVGELHYTDAEALNPGAAFEESKT 528 Query: 303 ---GQVGTVQLWEQVV----------SQHDSQCNPQQESWTSYFDSLPQESS-------- 341 G V+L+ S + ++ D Sbjct: 529 ENAEVGGEVELYLLQTGGQAEAGLSDSPDQDEAEAGANGRSNPIDDSAGNEEGRQRDSEN 588 Query: 342 ---------ASILARRIAYTISNMIG--------TDTIFSNGKKRVIQAKDILVLVRKRK 384 AR IA I + + R ++ +DI++L+R Sbjct: 589 EEKEEVLENIQCEARLIARLIKQLREPDEKGKVFQVWDKIAERYRCVEFRDIVILLRT-- 646 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 T + + I + + I+ +M+L + I + D+ + +L+SP Sbjct: 647 -TRNWSEVFMEELTAQGIPAFADTGAGFFKTIEIQVMMSLLQIIDNPLQDIPLLAVLRSP 705 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPH 501 + +F+ +D+ ++ ++Y+ +Q A K + + + ++Q S Sbjct: 706 VADFTTEDLAELRLA-DRKASLYKALQILAGSETPAAMKAAAFSQKLLQWRRVSQHLSTE 764 Query: 502 DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE----- 555 + G + L + E+ SY L ++ ++ Sbjct: 765 RLLWRLYQETGYYAAIGAMPLGEQRQANLRILFERARQFEETSYKGLFHFVNFIDKLKDS 824 Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + + N N VRIM++H +KGLE PVV L G + K + + L Sbjct: 825 RNDLGSAKILGENDNVVRIMSIHKSKGLEFPVVILAGCGKKFNLQDMNKNILLHHDLGFG 884 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-- 673 P + + + + L + L+ T E R+LYV +TRA ++L+I ++ Sbjct: 885 PEVVTPSLRLSYPSLLKQALREKLRAETLSEEMRILYVALTRAREKLVITATVKDLDKDV 944 Query: 674 -----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS----INKDEWIAY 712 + + + D + + + S + W Sbjct: 945 RKWAESAGSAGEKLPAYEVLHSNRYLDWIGPALMRHQACTLRPHIFSGRLIGDPSIWRIN 1004 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK------- 765 + P REE+ ++L P + L+ Sbjct: 1005 TGDIREMKIPPAGREESEQELEKWLDYLTGENQPEGVEPEIERRLSWVYPFAALAGTSAK 1064 Query: 766 ----------------------------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 + G ++H ++Q + Sbjct: 1065 LTVTELKRRFEQNSPEEGLAYLYPDMPVKRPMFMEEKKGLSAAEAGTVLHFIMQHL-DYG 1123 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKI 855 + + I K L ++ + + + I L++ + + S EV + +I Sbjct: 1124 KEDIEIQIEKMINK--DLLTKQQAQGIDVNKIRTFLQSDLGRRMCASRSINREVPFNMEI 1181 Query: 856 N------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903 ++I++ G ID + + +YKT + + + Q Sbjct: 1182 PCGEVYEHMDSEVYQGENILLQGVIDCFFEEPDGLVLLDYKTDYVPEGGSGQLRERYRVQ 1241 Query: 904 LSIYEKILKDSYPNKSLVCLLIYV 927 L+ Y + L+ K + +Y+ Sbjct: 1242 LAYYARALETL-TGKRVKEKYVYL 1264 >gi|295702782|ref|YP_003595857.1| ATP-dependent nuclease subunit A [Bacillus megaterium DSM 319] gi|294800441|gb|ADF37507.1| ATP-dependent nuclease, subunit A [Bacillus megaterium DSM 319] Length = 1245 Score = 390 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 160/1006 (15%), Positives = 331/1006 (32%), Gaps = 126/1006 (12%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 L + L AS+ + + + T+ + ++ +L++ Sbjct: 257 RAVNAEEDLAQIHRLISASK-HSFADLHEEMQNLNFTRLKPCKGEAYDSQLLDDFGELRK 315 Query: 99 KLKKSQDEFIKIRDRFNTY-------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151 K K S ++ + KM + L + YE KK+ ++DF D Sbjct: 316 KAKTSLEKLHADLFSRPLHGYMADFEKMKPVIETLIFLVQRFGERYENMKKEKGLVDFSD 375 Query: 152 LIINTNDLLKKRDV----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 L +L ++ + I K + +L+DE QDT+++Q +I+ +T D Sbjct: 376 LEHYCLQILSVKEDGVLKPSSIAQKYRTQFEEVLVDEYQDTNMVQETLIKLVTRDS---- 431 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 LF VGD KQSIY F AEP L + + + G I+L +FRS Sbjct: 432 ---EEQGNLFMVGDVKQSIYRFRLAEPFLFLTKYKRFTQDGRQFG---KRIDLNKNFRSR 485 Query: 268 ADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 + +L + +F+ E ++ D +++ +S G + ++ + + Sbjct: 486 SQVLDATNFIFNQLMDEEVGEIAYDDDASLKLGASYPKVEGMETELLLIAKENAEEGGEE 545 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRK 382 + + S + +A + AR +A I ++ + K R + +D ++L+R Sbjct: 546 ESDSSLVAFSEAELETAQLEARAMARKIKELVQNRFQIYDRKLDIMRNVTYRDFVILLRS 605 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 I + + + + D + +M+L + + + D+ +L+ Sbjct: 606 MPWAAQIMDEFKQE----GVPIYADLSTGYFDATEVMIMMSLLKVVDNPHQDIPLASVLR 661 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQFC 498 SP+ S++++ + ++ + A + + + + A+ Sbjct: 662 SPVVGLSDEELATLRAEQKKGTYYDALKTYLAVSDDEELRDKVKYFYEQLKAWRTQARQS 721 Query: 499 SPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557 S + I + G + L + + E S+ L + +E+ Sbjct: 722 SLSELVWQIYRDTGFFEFVGGLPGGKQRQANLRALYDRARQYEATSFRGLFRFLRFIERM 781 Query: 558 -----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 RA + VR+MT+H++KGLE PVVF+ Q K + L Sbjct: 782 QDRGNDLGAARALGEQEDVVRLMTIHSSKGLEFPVVFVAGLARQFNLMDLNKAYLLDKEL 841 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 + + + K +KK + E R+LYV +TRA ++LI+ + Sbjct: 842 GFGSKYIDPKLRITYPTLLQQTMKKKMKKESMAEEMRVLYVALTRAKEKLILVGTVKDAP 901 Query: 673 EKKSNQRTWYDMVYD---------------------------------------SFHNDE 693 EK + H Sbjct: 902 EKLRQWSSVMAHEDWTLPAHVRRDAKCYLDWIGSSLIRHQNVSHMVEGEVQPAEMIHQHA 961 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---LFSPIKND 750 K+ + + E E H L++ E + + D + + + Sbjct: 962 SSWKLSTLLAGDLAEQPLEEQQHHEELLNALQKHEPVSESSDYKDEVYRRLNWSYDYRVA 1021 Query: 751 INEPYILNPSTID--------------------TKGKTNLESLLSDNQTFNRGLIIHKLL 790 + S + L RG H ++ Sbjct: 1022 SVHRSKQSVSELKRQQQLTDAGGSDDLVRESKAPLENRPLFLQEKSLTGAERGTATHAVM 1081 Query: 791 QVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-S 845 Q + ++FI S TK L ++ + + L++ + + Sbjct: 1082 QQLPLNKAYTLEMVQDFIQSMVTKE--LLTQEQADAVDANDVADFLDSDIAQGIRTARTV 1139 Query: 846 YSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVP---QEI 893 Y E+ S ++ + I++ G ID + +++ + + ++KT + + Sbjct: 1140 YREMPFSLGVSAKEIYDHWEQEDETILVQGIIDCLYETEEGLVLLDFKTDNISDRFQGDF 1199 Query: 894 EH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 E + + QL +Y K ++ L ++ I Sbjct: 1200 ERAKPFLIDRYRIQLELYAKAIERIVKQPVQHRYLYFLDGGHAVEI 1245 >gi|150014906|ref|YP_001307160.1| recombination helicase AddA [Clostridium beijerinckii NCIMB 8052] gi|251764509|sp|A6LPC4|ADDA_CLOB8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|149901371|gb|ABR32204.1| Recombination helicase AddA [Clostridium beijerinckii NCIMB 8052] Length = 1245 Score = 389 bits (999), Expect = e-105, Method: Composition-based stats. Identities = 146/980 (14%), Positives = 320/980 (32%), Gaps = 132/980 (13%) Query: 63 EERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRDRF 114 E F+ LSS ++ + +K+ ++ ++I +L + + Sbjct: 271 EAMFNSLSSVQFSRLKSIKKDKVSDELSQNTVKKIRDDVKKGISELLNNAYSVNPQQMLR 330 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWI 169 N + + L +A + + K++ +LDF DL +L D + + I Sbjct: 331 NIQGSYPYIKKLIELVLEFSARFSKRKRERNILDFNDLEHLCLKILSDYDDENNIIPSSI 390 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + + +L+DE QD++ +Q +I ++ + +F VGD KQSIY F Sbjct: 391 AMNFKEYFDEVLVDEYQDSNNVQETIINLVSRK-------NDDNPNVFMVGDVKQSIYRF 443 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGL 287 A+P+ + + ++ I+L +FRS +I+ V+ +F + L Sbjct: 444 RQAKPELFIEKYNTY----DSSNGVNRKIQLYKNFRSRREIIDGVNYIFKEVMSEVVGEL 499 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + + + + + + + + ++ + R Sbjct: 500 EYTDEEALNLGADFKENKFKDTIVGGPIEVNIIDKSHNETVVED-NEEQEEINNVILEGR 558 Query: 348 RIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 +A I ++ +G+ R ++ +DI++L+R K+ L L + Sbjct: 559 IVAKRIKELMSKSEDEQIFKVLDKESGEYRPLKYRDIVILLRATKNWS--EPLLDELSAE 616 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 I V + + + I+ +++L + + + D+ + +++SP+ FS ++I I Sbjct: 617 -GIPVYADTGSGYFESIEIRTIISLLKVVDNPMQDIPVISVMRSPIMGFSAEEISDIRLV 675 Query: 460 RHET-----------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + + E + +++ I+K ++ I + + + + + + +F + Sbjct: 676 KKDNYFYENIKYISEEAYNSINESYSDVLIAKCKYFINSVDKWRNKSIYMAIDEFIWYLY 735 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G L + E+ S+ L I+ + Sbjct: 736 MDTAYYGYVGAMPNGVLRQANLKILFQRARQFEKTSFKGLFNFINFINKLIKSSGDMGSA 795 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N + VRIM++H +KGLE PVVFL G K + L P Sbjct: 796 QVLGENEDVVRIMSIHKSKGLEFPVVFLCGLGKNFNLMDLNKSILYHDELGLGPDFIDIG 855 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---------- 672 + + K +K T E R+LYV TRA ++LI+ Sbjct: 856 KRFSIGTLAKESIKKKMKFETLSEEMRILYVACTRAKEKLIMTGTVGNLEKSAEKWLGSA 915 Query: 673 -------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + KS + + N I KD+ ++ S + Sbjct: 916 SLDYNRISPSEVLKGKSYLDWICMSLCQHRDGSVLSESFGTENLILKDDNSRWKVSFWNK 975 Query: 720 ENTPLEREETIKQLMDEQKIPKK------------------LFSPIKNDINEPYILNPST 761 + + + + + + ++ P K ++ S Sbjct: 976 GDLIDKTKTEVLEQGEGYELTIINNKPYDNYLYEEVDKILSYKYPFKASTTIKSNISVSD 1035 Query: 762 IDTKGK-----------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804 + + +G +H +++ I + Sbjct: 1036 LKRRHAEEDYDTEQLYREKVKVVPKFLQEKKGLTPSEKGTAVHFVMKKIDFNRVSSTEEI 1095 Query: 805 ITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAM-----SCDSYSEVSVSGKIN- 856 K + E ++ I + + + Y E+ +I+ Sbjct: 1096 KEQLHELFEKEFLLSEELKVINPTKILSFFRSDLGKKILDLNCRGEKIYREIPFYTEISS 1155 Query: 857 ----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906 + I + G ID + +I + +YKT + + + + QL Sbjct: 1156 LEVDKTLDNIYKDEKIRLQGIIDCFFEYKGDIILIDYKTDYIMEGHEDEFKEKYRKQLDY 1215 Query: 907 YEKILKDSYPNKSLVCLLIY 926 Y + K + +Y Sbjct: 1216 YSDAIFKL-TGKKVKYKYLY 1234 >gi|313622690|gb|EFR93052.1| ATP-dependent nuclease subunit A [Listeria innocua FSL J1-023] Length = 1235 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 149/1023 (14%), Positives = 325/1023 (31%), Gaps = 128/1023 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 I +D+ S + V + E P A + Sbjct: 226 IKEDIQLRMNQAKSYLLTAVDYANENNGPAPYLSTLENDLAQINTLSSISWDNWQDVKFG 285 Query: 76 QKF-TPQKNIITQEINKKSPDLKEKLKKSQDE--------FIKIRDRFN------TYKMF 120 + ++ + + E+ KK +D + R KM Sbjct: 286 FESIDFKRIPALKNKADFDEEYVEEAKKFRDAAKKEVKNVLVDWFSREEENYLSDLEKMK 345 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 L K ++ E K++ VLDF DL +L K + + + + Sbjct: 346 PDIKTLSELVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKNSAPSDVANSYKNQFKEV 405 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 LIDE QDT+++Q ++ +T N++ + LF VGD KQSIY F AEP + + Sbjct: 406 LIDEYQDTNMVQETILLLVT-------NSNDTKGNLFMVGDVKQSIYRFRLAEPTLFMTK 458 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHR 298 + Q+ +G I+L +FRS ++L + +F + + D + Sbjct: 459 YQEYQQDGEGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDEAAELTLG 515 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 +S + + + + + + S + + +R IA I MI Sbjct: 516 ASFPEANNMATELLLIDMKSEEKESEDELSLQ-------ELQKNQVESRAIATKIREMID 568 Query: 359 TDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + K R IQ +DI++L R P + + I N+ + Sbjct: 569 NKFPIYDKKLQQNRPIQYRDIVILARAMTSAPDMEEAMK----IKDIPFYANNSSGYFET 624 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 + ++AL + I + D+ +L+SP+ +E+++ + + + ++ + + + Sbjct: 625 TEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQXXXXKKKG-YFFDAMLAYKD 683 Query: 476 ----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 +K I ++ ++ + I + G + L Sbjct: 684 ITVSDAANKISRFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLR 743 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 744 ALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEF 803 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVV + + K + + + + + Sbjct: 804 PVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKKSREMIA 863 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVY 686 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 864 EEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVSNQQETILPAAIRAKAKCYLDWIG 923 Query: 687 DSFHNDERVKKIKLTNSINKDE-----------------WIAYEWSTHHPENTPLEREET 729 ++ K++ I + + + + ++ Sbjct: 924 NATIRHSHFKELLCEEKIKTLATDMKLQIEIKTKEMFLTDDSEKEKSDNWMENVKAHKQV 983 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG----------------------K 767 + + +I + + K++ S + K Sbjct: 984 PVKSPYKDEIERFMHYQYKDEEATGIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSLD 1043 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAKLWPAKEYKNL-L 825 + G +H L+Q + + K+ ++ + + + K + + Sbjct: 1044 RPKFLQQNKLSATEIGTAMHTLMQAVPLDDKPTEKDLVSLLQLMREKDILTEAQIKAINV 1103 Query: 826 LSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQ 875 I E+ + T + EV S + + ++I G +D + + Sbjct: 1104 NQIISFFESALGKTVLQKKDKVKREVPFSYLLPAAKLYNQTNLDEHVLIQGVVDSMIEEE 1163 Query: 876 QNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 +I + +YKT + + + Q+ +Y + ++ K L + Sbjct: 1164 DSIILIDYKTDKIEGRYDNWAAAEKVMKDRYQIQIKLYAEAIQAISGKKVSHAYLYFFDG 1223 Query: 930 PKV 932 + Sbjct: 1224 QHI 1226 >gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814] gi|149752362|gb|EDM62293.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814] Length = 1221 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 153/992 (15%), Positives = 309/992 (31%), Gaps = 128/992 (12%) Query: 37 LSMETGNPTILKKAQTLQQASQTQCIEERFS--LLSSFFLTQKFT--PQKNIITQEINKK 92 E L+ + L + + + E FS + + T +K + ++I + Sbjct: 245 AVYEATLEKDLQVIEELCNRASYKSLAEAFSNVKWARIAANKDKTVSEEKIDLVKKIREM 304 Query: 93 SPDLKEKLKK--SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 + + + + ++ + + L + +EE K+ ++DF Sbjct: 305 VKGIVKNMSAQYFYESPEELVEDLRV--CTPAMEELADLVRLFAERFEEQKRAQNMIDFS 362 Query: 151 DLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 D+ +L ++ V + I + ++ I+IDE QD++LIQ ++ Sbjct: 363 DMEQYALRILTQKTENGFVPSKIAEEYQKQFEEIMIDEYQDSNLIQEAIL-------TSV 415 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 S +F VGD KQSIY F + P+ L + R K I+L +FRS Sbjct: 416 SGCRSGRYNIFMVGDVKQSIYRFRLSRPELFLEKFRTY----NIEESKTQRIDLHKNFRS 471 Query: 267 TADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 ++L + +F E G+ D + + + S + Sbjct: 472 RKEVLESANAIFRQIMTEKLGGIVYDDQAALYPGAEYPENDNVKTEILVMDSDLEILSKE 531 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRK 382 + S + AR IA I ++ + + G+ R ++ DI++L R Sbjct: 532 EDFEEKIP-------SERELEARMIAMRIRELLRSQKVTDKETGELRNVRYSDIVILTRS 584 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 K + + N I I LM R + ++ D+ +L Sbjct: 585 IKG---FADVFTEVLNREGIPTYAGTSEGYFQTQEIGVLMDYLRVLDNRRQDIPLTAVLS 641 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----CGISKFQHVIKYIHELIHIAQFC 498 S S++++ +I +T + K Q + + + I + Sbjct: 642 SAFAGLSQEELAEIRCAYPDTAFFESVTKYREQGENADIQLKLQKCLDQMDDFRKIVPYT 701 Query: 499 SPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ- 556 H+ IL G + LD + E SY L + +EQ Sbjct: 702 PMHELLWKILETTGYGDYVASMPGGAQRKANLDMLIEKARAYESTSYKGLFHFVRYIEQL 761 Query: 557 ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 + + VR+MT+H +KGLE PVV + G + + + + Sbjct: 762 QKYDVDYGEASIEDEHADTVRVMTIHKSKGLEFPVVIVAGMGKRFNMQDARSAVALHAGM 821 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 ++K + I + K + E R+LYV +TRA ++LII + Sbjct: 822 GVGLDAVNLEYRTKIPSIIKKVIQKEEALESLGEELRVLYVALTRAKEKLIITGTLSNPE 881 Query: 673 EK---------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 +K + + + + + + L + E+ Sbjct: 882 DKISDGRVFQGNKRKELSFLQLSHAVTYWDFILPAVLRTEGEPLKLQILHVEDVVKESIE 941 Query: 724 LEREETIKQLMDEQKIPKKLFSP-------------IKNDINEPYILNPSTIDTKGK--- 767 E + I + + E +++ P + + L + + K + Sbjct: 942 EEEKSGISRAVLENWDVNEIYEPKLHDMMKEQFEFIYPYEKSSMRKLKFTVTELKKRAYE 1001 Query: 768 ---------------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLP--- 797 RG H++++++ Sbjct: 1002 IGLDGGEEEREEEGELLQEEPEVVPMIPQFLQEDEVLAGAARGTAYHRVMELLDMKGMPE 1061 Query: 798 -EHKRKNFITSYCTKNAKLWPAKEYKNLLLS----------ITRLLENPMMTTAMSCD-- 844 ++ + + + I + ++ + D Sbjct: 1062 FTEDTAGEKENWKKYFMDWLDDQVRRGRIEEDAARCICWEDILQFAKSGIGRRLREADGK 1121 Query: 845 --SYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + E I+ + I++ G ID + + +YKT + E Sbjct: 1122 QRLWREQPFVLGIDARELYPEEEDGELILVQGIIDAYFEEPDGLVVLDYKTDKV--RRKE 1179 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + QL Y K L+ K + +IY Sbjct: 1180 ELAERYQEQLRYYAKALEQM-TGKKVKEKIIY 1210 >gi|158321312|ref|YP_001513819.1| recombination helicase AddA [Alkaliphilus oremlandii OhILAs] gi|251764496|sp|A8MJ41|ADDA_ALKOO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|158141511|gb|ABW19823.1| Recombination helicase AddA [Alkaliphilus oremlandii OhILAs] Length = 1197 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 153/1016 (15%), Positives = 323/1016 (31%), Gaps = 125/1016 (12%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQ--TQCIEE 64 I K + L + + ++++E G P + L + + L + + E Sbjct: 212 TIKKRMGILLKGAMDLLEIAQTIALEPGGPDVYEEAILSDLDQIKELYHSLENPITDFYE 271 Query: 65 RFSLLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 + + ++ L + P +++ K+ D+ + ++++ + +++ Sbjct: 272 QLNCINFIRLKTSKDSDPILKEECKDLRDKAKDIVKDIRENIFNVSPEEYVEDLNRLYPL 331 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L Y E K ++DF DL +L + ++ +I + Sbjct: 332 MDYLYRLVIGFTERYTEKKTDKGIVDFNDLEHFALRILANDLAAQE----YREKFEYIFV 387 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD++++Q +I+S+ + LF VGD KQSIY F A+P + + Sbjct: 388 DEYQDSNIVQETLIQSIKRED-----------NLFMVGDVKQSIYRFRLADPTLFIEKYE 436 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + I+L +FRS +L V+ +F + + D R Sbjct: 437 TFGTEEGHIN---RRIDLAKNFRSRGQVLNGVNYIFKHMMSKELGEIDYDE-------RA 486 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA-SILARRIAYTISNMIGTD- 360 + + + + QE + + AR +A I ++ + Sbjct: 487 ALYQGTEFEPIQDPSIEINLIEKNMEIDEEMEEELQELADIEVEARIVAKRIKALLNEEI 546 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 R I+ KDI+VL+R T + I + + + + Sbjct: 547 YDPRVEGYRKIEYKDIVVLLRT---TQNWAQSFLEVFVREGIPAYADANTGYFEAIEVNM 603 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE---YIQKFANCG 477 + L R I ++ D+ + +++SP+ +F+ +++ I Y+++ + Sbjct: 604 FLNLLRVIDNKRQDIPLLSVMRSPIGDFTTEELIHIRVNDKTGTYYDAIEKYVEEKTDDL 663 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFT 536 K I+ +++ + A++ F + G + L + Sbjct: 664 KYKLVSFIEKLNQWANDARYIKIDQFIWKLFMDTGYYYYVGAMPGGLQRQANLRVLFDRA 723 Query: 537 LRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 + E+ S L I +E+ + N N VRIM++H +KGLE PVV Sbjct: 724 NQFEKTSIKGLFNFIKFIEKLQSSKGDMGAAKILGENDNVVRIMSIHKSKGLEFPVVITA 783 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 G + + L P ++ + +K + E R+L Sbjct: 784 GMGKNFNLRDTSADVLLHKDLGLGPKFTDPNLRTYRDTIAKLAMKDQIKIESLSEEMRIL 843 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQR------------TWYDMVYDSFHNDERVKKIK 699 YV TR D+LI+ ++ + D + + + ++ Sbjct: 844 YVAFTRPKDKLIVVGSIRNIEKQVKKWSKADNVYSLMNAKNYLDWIGTALVKHPDGQALR 903 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQL-------------------------- 733 + D + N + +++ Sbjct: 904 ELGGLGFDAASDGMEDSEWTINILGRQVIVLEEQDKVLKEEDYREKLLYFNREDFSSGGY 963 Query: 734 ---MDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----------------GKTNLESLL 774 +E + + + P L+ S I Sbjct: 964 TEYKEEIENRLNWKYDHPHSVQIPSKLSVSDIKKAHINEIDVIAHQIPILVKSPKFMEGK 1023 Query: 775 SDNQTFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITR 830 + RG +IH +LQ + E + I + L +E K + I Sbjct: 1024 TTFTAAERGTVIHFVLQHLDLNKVGSEEDIREQIHWMVARE--LITEEESKVVDTKKILN 1081 Query: 831 LLENPMMTTA-MSCDSYSEVSV----------SGKINCPKKDIIISGRIDQISISQQNIF 879 +P+ + Y E G + + +++ G ID + + Sbjct: 1082 YFYSPIGERMRKAKKVYRESPFIIEKSAGEVIEGLSDDIEDKLLVQGIIDCYFEEKDGLI 1141 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + +YK + I + + QLS+Y + L+ + L + + Sbjct: 1142 LIDYKNDIVLNGNIAAVVARYELQLSLYREALERITGREVKETYLYLFDVDQGVRL 1197 >gi|182417613|ref|ZP_02948934.1| recombination helicase AddA [Clostridium butyricum 5521] gi|237669499|ref|ZP_04529479.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378532|gb|EDT76062.1| recombination helicase AddA [Clostridium butyricum 5521] gi|237654943|gb|EEP52503.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1252 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 163/999 (16%), Positives = 320/999 (32%), Gaps = 143/999 (14%) Query: 63 EERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRDRF 114 ++ +S L S + + +K+ ++ + I +L + Sbjct: 271 DDIYSSLCSISFGRLKSIKKDKVSDENAQNTVKSIRDDIKKKISELINNTFSVTPEEMLI 330 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWI 169 N + + + + + KK+ +LDF DL +L +D + Sbjct: 331 NIKGAYPTIKKLTEIVLEFGEKFSQKKKEKNILDFNDLEHLCLKILSDKDENGNIIPSKT 390 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + + +L+DE QD++ +Q +I ++ +F VGD KQSIY F Sbjct: 391 AIEFKNLFDEVLVDEYQDSNNVQETIIELVSR-------RKDEFPNVFMVGDVKQSIYRF 443 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGL 287 A+P+ + + T I+L +FRS +++ V+ +F E L Sbjct: 444 RQAKPELFMEKYINY----TLEESNNRKIQLYKNFRSRKEVIDGVNYIFKEIMSETVGEL 499 Query: 288 SEDSTTTIRHRSSRIG-------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + +S G +++ S +S N ++ + + + Sbjct: 500 EYTDEEALNLGASYENSEDENVILGGPIEVNIIEKSIEESDLNKEKLDEEDFENEEIEGV 559 Query: 341 SASILARRIAYTISNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + + +A I ++ G+ R I+ KDI++L+R K+ L Sbjct: 560 NLEG--KIVAKRIKELMTTTGNNVFKVLDKETGEYRPIKYKDIVILLRATKNWS--ESLL 615 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 L + I + + + I+ +M+L R I + D+ + +LKSP+ FS +D+ Sbjct: 616 DELGQE-GIPAYADTGSGYFESIEIRTIMSLLRVIDNPMQDVPVIAVLKSPIMGFSAEDL 674 Query: 454 FKICTQRHETETVYEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 I + E I + I++ + ++ + + A + +F Sbjct: 675 SIIRLKNKEKYFYENIADIAEGNICDISEELITRCKGFLEKLEIWRNKAIYMPIDEFIWY 734 Query: 507 ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPT 560 + G L + EQ S+ L I+ + Sbjct: 735 LYMDTAYYGYVGAMPNGVLRQANLKILFQRAKQFEQTSFKGLFNFINFINKLTKSSGDMG 794 Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 + N + VRIM++H +KGLE PVVFL TG Q K + L P Sbjct: 795 SAKILGENEDVVRIMSIHKSKGLEFPVVFLCGTGKQFNLMDLNKNILYHDELGFGPDFVD 854 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-- 678 + + K +K T E R+LYV TRA ++LII N + Sbjct: 855 LEKRVSIGTIAKEAIKKKMKLETLSEEVRILYVACTRAKEKLIITGTVNNIQKSIEKWVS 914 Query: 679 -----------------RTWYDMVYDSFHNDERVKKIKLTNSINKD------------EW 709 +++ D + S K ++ +++ + W Sbjct: 915 SASLDYNLILPSEILKGKSYLDWIGMSLCQHNDGKVLREKIAVSNEISKDDNSKWDIKLW 974 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---------LFSPIKNDINEPYILNPS 760 + ++ + E +E +++E+ P+K ++ S Sbjct: 975 KRSDIVVNNEDGKLEEEKEVKLSILEEEYDKDVYGEVDKILSYKYPLKESTKLKSNISVS 1034 Query: 761 TIDTKGK-------------------------TNLESLLSDNQTFNRGLIIHKLLQVIFT 795 + + +G +H +++ I Sbjct: 1035 DLKKRNAEFIDQHVESINIEEVESKNKRTIITPKFLQEEKGLTAAEKGTAVHFVMKKIDL 1094 Query: 796 L---PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT---TAMSCD--SYS 847 H+ K+ I Y +N + + I ++ + Y Sbjct: 1095 DKVSSIHEIKDQI-QYLYENDFILEEEMKAVNPSKILNFFKSDLGKMMTELHKEGKKIYR 1153 Query: 848 EVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 E+ +I + + + G ID + +YKT + + Sbjct: 1154 ELPFYTEISSVNIDNTLSEEYENEKVRLQGIIDCFFEYNGESILLDYKTDYVSKDNEAEL 1213 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +I QL Y + K L KV I Sbjct: 1214 QKKYIKQLDYYSDAVFKITGKKVSKRYLYSFYLEKVIEI 1252 >gi|321314788|ref|YP_004207075.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis BSn5] gi|320021062|gb|ADV96048.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis BSn5] Length = 1232 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 154/1037 (14%), Positives = 330/1037 (31%), Gaps = 143/1037 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS--- 70 + +D+ + + + + L+ G P L Q + ++ FS L Sbjct: 222 VKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRV 281 Query: 71 -SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF-------IKIRDRFNTYKMFKS 122 + + + + + ++ DL+ KK ++ + + +M Sbjct: 282 PAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKNDYFTRSPEQHLKSLAEMKPV 341 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEI 177 + L +E AK++ ++DF DL +L + ++ Sbjct: 342 IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGESEPSEAARFYQEQF 401 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +L+DE QDT+L+Q +++ +T + LF VGD KQSIY F AEP Sbjct: 402 HEVLVDEYQDTNLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLF 454 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295 L + + + G I+L +FRS ADIL + +F + + D + Sbjct: 455 LSKYKRFTESGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAEL 511 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + ++ T + + D+ + + + + A+ IA I Sbjct: 512 KLGAAYPDNDETETELLLIDNAEDTDASEE----------AEELETVQFEAKAIAKEIRK 561 Query: 356 MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 +I + +GK R IQ +DI++L+R P I R I V N Sbjct: 562 LISSPFKVYDGKTKTHRNIQYRDIVILLRSMPWAPQIMEELRA----QGIPVYANLTSGY 617 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467 + + + +++ + I + D+ +L+SP+ E+++ I + + Y Sbjct: 618 FEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDY 677 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 + K ++ + ++ S + + K G + Sbjct: 678 LAAGDRNDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQ 737 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + + E ++ L + +E+ RA S + VR+MT+H++K Sbjct: 738 ANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 797 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF G K + L + + + K +++ Sbjct: 798 GLEFPVVFAAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRR 857 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKI 698 E R+LYV +TRA ++L + ++ + + D + F + + Sbjct: 858 ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYL 917 Query: 699 KLTNSINK-----------------------------------DEWIAYEWSTHHPENTP 723 D+ + Sbjct: 918 DFIGPALARHRDLEDLAGVPAHADISDHPARFAVQMIHSHDLLDDDLEERMEEKSERLEA 977 Query: 724 LEREETIK---QLMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------ 762 + R E + ++ + P + S I Sbjct: 978 IRRGEPVPGSFAFDEKAREQLSWTYPHHEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKP 1037 Query: 763 ---DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816 + + +G +H ++Q I + + + K L Sbjct: 1038 ADGSILFRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LL 1095 Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIIS 865 ++ + + I + + + E+ S + + +++ Sbjct: 1096 TEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAQEADEPLLVQ 1155 Query: 866 GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 G ID + ++ +++ +YK+ + + Q+ +Y K ++ K Sbjct: 1156 GIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTK 1215 Query: 919 SLVCLLIYVSEPKVFII 935 C L + + + Sbjct: 1216 VKGCALYFFDGGHILTL 1232 >gi|300856480|ref|YP_003781464.1| putative ATP-dependent exonuclease [Clostridium ljungdahlii DSM 13528] gi|300436595|gb|ADK16362.1| predicted ATP-dependent exonuclease [Clostridium ljungdahlii DSM 13528] Length = 1240 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 172/1014 (16%), Positives = 334/1014 (32%), Gaps = 141/1014 (13%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 +E T K + +++ EE + T + +E+ +++ ++++ Sbjct: 251 LEHYADTFKKDYENIKELLLLNSWEELKEKFLQLSFDKLSTKRVKDEVKEVKERAKNVRD 310 Query: 99 KLKKSQDEFIKIRDRF------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 ++KK + + N +++ ++L + +Y K++ +LDF D+ Sbjct: 311 EVKKKLNSIKEDIFLGSDNMYKNMQEVYPMMKCLVSLVIEFDKNYSLKKRERGILDFSDI 370 Query: 153 IINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 ++L RD V + + + I IDE QD++ +Q ++ ++ Sbjct: 371 EHFCLEILTDRDEEGNIVPSEAALEYRRYFEEIFIDEYQDSNEVQEVIMNMISRK----- 425 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 S LF VGD KQSIY F ++P+ L++ ++ T I+L +FRS Sbjct: 426 ---SKDSNLFMVGDVKQSIYRFRQSKPELFLQKYNSYSEKKTAEN---RKIKLSENFRSR 479 Query: 268 ADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 +I+ + +F L +++ + G +V + + + Sbjct: 480 KEIIEGTNYLFKQIMCREVGELDYTDEESLKSSADYENSSGNYSRDIEVNIIDKKEESEE 539 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--------NGKKRVIQAKDIL 377 + D++ + AR +A IS +I R + KDI+ Sbjct: 540 IQENEEVLDNV------QVEARLVAEKISELINGKEEVEPLKVYDKNTKSYRNVMYKDIV 593 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L+R ++ I N ++ V + +++ +K ++++ I + D+ Sbjct: 594 ILMRATQNWAPI---FVEELNSLEVPVFADISAGYFENIEVKTIISVLEIIDNPLQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-------------KFQHV 484 V +L+SP+ +FS +++ + + N S K Sbjct: 651 VAVLRSPIESFSPEELIDLRMVDRKMHFYDILKIISENDPESDISLKYVENGLKYKVSEF 710 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNS 543 +K ++ ++ +F + G + L + E++S Sbjct: 711 LKRLNNWRKKVKYMPIDEFIWHLYTETGYYGFIGAMPGGIQRQANLRMLFERAKQYEKSS 770 Query: 544 YSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 Y L I+ + + N + VRIM+VH +KGLE PVV L TG + Sbjct: 771 YKGLFNFINFMNKLKNSSGDLGSAKILGENEDVVRIMSVHKSKGLEFPVVILSGTGKKFN 830 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 K + L P + L K LK T E R+LYV TRA Sbjct: 831 LMDMSKGVLFHEKLGLGPDYVNVKRHICYPTVMKQVLRKKLKVETLSEEMRILYVAFTRA 890 Query: 659 SDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDSFHNDERVKKIK 699 ++LII N + R + D + + K I+ Sbjct: 891 KEKLIITGMVNNIEKTTQKWCECASYKGNKLPEYSLISARNFLDWIGAALAKHPCGKSIR 950 Query: 700 LTNSINK---------DEWIAYEWSTHHPENTPLERE--------------ETIKQLMDE 736 + I W + + E+E E Q MD+ Sbjct: 951 EISKIEDNLNLVIGDSSRWKINIYKKDDFKTVSQEKEDVDILGKIEELNLTEYDGQYMDK 1010 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTID------------------TKGKTNLESLLSDNQ 778 + P + S + K Sbjct: 1011 VDRRLNWKYKYEEACKIPAKFSVSELKRRFDLNDIEDSANLVELVQLKKPLFLREKKGMT 1070 Query: 779 TFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLEN 834 RG ++H +LQ I + K + + +E K++ L I + + Sbjct: 1071 AAERGTLLHLILQHIDIKKVNSYDEIKEQVGKLVQRE--FIREEEVKSIPLGKILKFFNS 1128 Query: 835 PMMTTAM-SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQISISQQNIFIF 881 + + + + Y E +I + III G ID + + Sbjct: 1129 EIGSRMKEAENIYRETPFYMEIESNELYKELPDKIYKDEKIIIQGIIDCYFEENGELVLI 1188 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +YKT +I+ I + Q+ Y + L+ K L + + Sbjct: 1189 DYKT--DYVDDIDDIKDKYKNQIYYYARALEKLTGKKVKNKYLYLFFNNSLVEM 1240 >gi|296332487|ref|ZP_06874948.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673768|ref|YP_003865440.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. spizizenii str. W23] gi|296150405|gb|EFG91293.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412012|gb|ADM37131.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1234 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 153/1026 (14%), Positives = 333/1026 (32%), Gaps = 141/1026 (13%) Query: 27 QVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS----SFFLTQKFTP 80 + + + L+ G P L Q + ++ F+ L + + Sbjct: 233 AKEKLQRALELTKVPGGPAPRADNFLDDLAQIDELIQHQDDFTELYKRVPAVSFKRVKAV 292 Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKSTLASLTLAKYL 133 + + + +++ DL+ KK ++ + M + L Sbjct: 293 KGDEFDPTLLEEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLADMKPVIETLVRLVISY 352 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDT 188 +E AK++ ++DF DL +L + + ++ + +L+DE QDT Sbjct: 353 GKRFEAAKQEKSIIDFSDLEHYCLSILTAENETGEREPSEAARFYQEQFHEVLVDEYQDT 412 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 +L+Q +++ +T + LF VGD KQSIY F AEP L + + + Sbjct: 413 NLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVG 306 G I+L +FRS ADIL + +F + + D ++ ++ Sbjct: 466 EGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDE 522 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 T + + ++ + + + A+ IA I +I + +G Sbjct: 523 TETELLLIDNAEETDAGEE----------AEELETVQFEAKAIAKEIRKLISSPFKVYDG 572 Query: 367 K---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 K R IQ +DI++L+R P I R I V N + + + ++ Sbjct: 573 KTKTHRNIQYRDIVILLRSMPWAPQIMEELRA----QGIPVYANLTSGYFEAVEVAVALS 628 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----YEYIQKFANCGI 478 + + I + D+ +L+SP+ E+++ I + + Y + Sbjct: 629 VLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELY 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTL 537 K + ++ + ++ S + + K G + L + Sbjct: 689 QKLETFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRAR 748 Query: 538 RNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 + E ++ L + +E+ RA S + VR+MT+H++KGLE PVVF Sbjct: 749 QYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAAG 808 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 G K + L + + + K +++ E R+LY Sbjct: 809 LGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLY 868 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDSFHNDE 693 V +TRA ++L + ++ + +T+ D + + Sbjct: 869 VALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYLDFIGPALARHR 928 Query: 694 RVKKIKLTNSINKDEWIAYE--------WSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 ++ + + + + S ++ ER E + ++ + + + Sbjct: 929 DMEVLAENGAATHADISGHPARFAVRMIHSYDLLDDDLEERTEEKSERLEAIRKGEPVPG 988 Query: 746 PIKNDINEPYILN-------------------------------------PSTIDTKGKT 768 D L+ P+ + Sbjct: 989 TFAFDEKAREQLSWTYPHHEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRR 1048 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LWPAKEYKNL-LL 826 + +G +H ++Q I + + K L ++ + + Sbjct: 1049 PAFMMKKGLTAAEKGTAMHTVMQHIPLTHIPTIEEAEQTVHKLYEKELLTEEQKTAIDIE 1108 Query: 827 SITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIISGRIDQISISQQ 876 I + + + EV S + + +++ G ID + ++ Sbjct: 1109 EIVQFFHTEIGGQLIGAKWKDREVPFSLALPAKEIYPDAQEADEPLLVQGIIDCLYETED 1168 Query: 877 NIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 +++ +YK+ + + Q+ +Y K ++ K C L + Sbjct: 1169 GLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTKVKGCALYFFDG 1228 Query: 930 PKVFII 935 + + Sbjct: 1229 GHILTL 1234 >gi|297616711|ref|YP_003701870.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680] gi|297144548|gb|ADI01305.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680] Length = 1250 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 157/1052 (14%), Positives = 324/1052 (30%), Gaps = 145/1052 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEER 65 E + + + + +I + ++L ++ G P LK +L + + E Sbjct: 214 EELKQGIGLEIGGCIEEIKRAIALCLKPGGPVAYIDNLKQDLKMLGSLSSLCK-RSWAEL 272 Query: 66 FSLLSSFFLTQKFTPQKN--------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 +K + I + + ++K+ + + Sbjct: 273 GEGFDGASFAGLKPLRKKDGIRSELQEQVKTIRDQVKKRIDSIRKTVFSRTPEQQANDMR 332 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV------SAWIRY 171 +M A + L Y AK++ VLDF DL +L + D + I Sbjct: 333 RMAPVVEALIGLVSEFGERYRGAKERRSVLDFSDLEHYCLRILSREDEGCDRFTPSSIAL 392 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + + IL+DE QD + +Q ++ +++ + ++F VGD KQSIY F Sbjct: 393 EFRERFVEILVDEYQDINAVQEAILNLISK-------QEAKRSSIFMVGDVKQSIYRFRL 445 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSE 289 AEP L + ++A N I+L ++RS ++ V+ +F + Sbjct: 446 AEPGLFLEKYHRYPRQADNGE---RRIDLKQNYRSRDRVIEAVNYLFGQIMAPGVAEMKY 502 Query: 290 DSTTTIRHRSSRIGQVGTVQL---------WEQVVSQHDSQCNPQQESWTSYF------- 333 + + S L + + + +E W Sbjct: 503 GGESELVPGSVYPDSDDGKDLGTEPVQLVIVDAAGDGVEPGDDSLEEQWDDDGVFSGSEE 562 Query: 334 --DSLPQESSASILARRIAYTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKRKDTPL 388 D+ + A + AR +A I + G R + +DI VL+R T Sbjct: 563 QGDNRVLFNQAQLEARLVAAEIERLRKEGVKVWDREAGDYRPLCFRDIAVLLRT---TRG 619 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 I D + +K +++L I + D+ + +L+SP+ F Sbjct: 620 AAQAFVEELRRAGIPAYAQVDTGYFDAIEVKTVLSLLNIIDNPRQDIPLLAVLRSPIGGF 679 Query: 449 SEDDIFKICTQRHETETVYEYIQ---KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + ++ +I E ++ K N K Q + + +A+ + Sbjct: 680 NAAELAEIRVHLPEGSFYEAAVRVAGKGDNPVGKKLQEFFRKLEGWRTVARRRGTKELLW 739 Query: 506 LILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564 + G + L + R E +S++ L + +E+ Sbjct: 740 NLFEDTGYYDYAGAMPGGKQRQANLRLLETWAARYENSSFTGLFHFLRFVERMQENGWEM 799 Query: 565 -----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + N + VR++++H +KGLE P+VF+ G K+ + L Sbjct: 800 GTAAVTAENDDAVRVVSIHRSKGLEFPLVFVAGLGRMFNFADLRGKVLVHRKLGIGLEFV 859 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK---- 675 + +++ E RLLYV MTRA ++L++ N+ Sbjct: 860 DRDLAVTYPTLAKLAVKNRIRREMLAEEMRLLYVAMTRAREKLVLVGTVKNLNKSAGEWC 919 Query: 676 ---------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP- 719 + R + D + + ++ + + Sbjct: 920 RAASTGADTLPEAVLARARCYLDWIAPAAVRQAGGLELWQRAGEENGQQEGEVYFDVRVV 979 Query: 720 -ENTPLEREETIKQLMDEQ------------------KIPKKLFSPIKNDINEPYILNPS 760 + ER T + D+ ++ ++L + S Sbjct: 980 KASELEERAATAPRPKDDDSLFTTGEGVELAAGDGLGEVERRLSWRYPWEKALGKKAKFS 1039 Query: 761 TIDTKGK----------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798 + + RG I+H +LQ + Sbjct: 1040 VTEARNIFAASGEWYGPEEEMRRTDFVSHPRFYRKTGGITAAERGSIMHLVLQHVDPAKA 1099 Query: 799 HKRKNFITSYCTKNAK-LWPAKEYKNL-LLSITRLLENPMMTTAMSCD--SYSEVSVSGK 854 A+ + + + + + +I L + + E+ S Sbjct: 1100 GDVTGVKRELEEMVAREILGPDQIEVVDIDAIAGLFAGELGRRIVRAGEAVLRELPFSLS 1159 Query: 855 INCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904 + + +++ G ID + + +YKT P +E + + Q+ Sbjct: 1160 LPAEELYSGELCGYGERVLVQGVIDCLLDEGDGFVLIDYKTDELRPGRVEELVAKYRPQV 1219 Query: 905 SIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935 +Y ++ K + L ++S I Sbjct: 1220 DLYALAVERIL-KKPVKKKYLYFLSGGLAVKI 1250 >gi|317128676|ref|YP_004094958.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522] gi|315473624|gb|ADU30227.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522] Length = 1242 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 164/1018 (16%), Positives = 328/1018 (32%), Gaps = 134/1018 (13%) Query: 31 INKYVSLSMETGNP-----TILKKAQTLQQASQTQCIEERFSLLSS-FFLTQKFTPQKNI 84 I K + L+ E P T + + + E+ ++ S F T K +K++ Sbjct: 237 IEKAMDLTREPNGPAKYSETFEEDILYIDSLIRASTWEQLYARFQSGSFKTIKRITKKDL 296 Query: 85 ITQEINKKSPDLKEKLKKSQDEFIKIRDR-------FNTYKMFKSTLASLTLAKYLNAHY 137 + +E+ +++ L+++ KK + +M S L K + Y Sbjct: 297 VDEELKERAKSLRDQAKKQVEAIKNELFTKEPDSFLEELKEMAPSVKTIARLIKAFSERY 356 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQ 192 EAKK+N VLDF DL +L + +LIDE QDT+L+Q Sbjct: 357 LEAKKENAVLDFNDLEHFCLAILADESEDGQWSPTRAASEFQDHFVEVLIDEYQDTNLVQ 416 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ L S F VGD KQSIY F AEP L + + +K Sbjct: 417 ETIVSLL-----------SKGNNRFMVGDVKQSIYRFRLAEPTLFLNKYKEYKK---EGD 462 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I+L +FRS +IL + +F + + + R + L Sbjct: 463 CEGWRIDLAKNFRSRCEILDATNYLFRQMMDETVGEINYDSDAELRLGNEDYLDQDGLET 522 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KR 369 +V + + ++ + ++ + R I I +I + R Sbjct: 523 EVAIINKGKPITVEDPGDTQVTLEEDLETSQMETRFIIKEIKRLIKEKYPVYDKNLKATR 582 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + +DI++L+R + I + + D + ++ +M+L + I Sbjct: 583 PVTYRDIVILMRSMPWAATMMDE----CKQEGIPIYADLSTGYFDAVEVRVMMSLLKVID 638 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----YIQKFANCGISKFQHVI 485 + D++ +L+SP++ F+E + + + Q K +H + Sbjct: 639 NPYQDVAVASVLRSPIYQFNEQQLAHVRIMERDGAYYDAIKKTAEQSPEKEISEKARHFL 698 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSY 544 ++ A+ + D + G + L + E S+ Sbjct: 699 LHLERWRTKARSGALSDLIWELYRETGYYDYVGGMPGGKQRQANLRALYDRARAYEATSF 758 Query: 545 SSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L + +E+ RA + VRIMT+H +KGLE P+VF+ + Sbjct: 759 RGLFRFLHFVERMQERGDDLGAARALGEQEDVVRIMTIHKSKGLEFPIVFVAGANKKFNM 818 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + L + + + K + + E R+LYV +TRA Sbjct: 819 QDLRGSYLLHKDLGFGSKYIDPKLRVAYPSLPQLAIKKRMHLESLAEEMRVLYVALTRAK 878 Query: 660 DQLIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKIKL 700 ++L + N + + + ++ D + + V++ Sbjct: 879 EKLYLIGTVNEAEKSLHKWKEFMNEKEWLLPAVDRQKGNSYLDWIGPAVLRHHAVQRSLF 938 Query: 701 TNS------INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK------------- 741 + + S E+ EE I + + Sbjct: 939 GEEQSNSMEEVHADPSKWFVSIIEQEDLKFSTEEKIISDTGMKSLIANFEKVPIQSSEIN 998 Query: 742 ------KLFSPIKNDINEPYILNPSTI-------------------DTKGKTNLESLLSD 776 + + S + Sbjct: 999 DIINRLEWRYRYNSAAVFQSKQTVSDLKRQQYKDEYSGSFYSDGFQSKYADRPKFLQKEA 1058 Query: 777 NQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 + RG +IH ++Q + +P N Y +N L + + + E+ Sbjct: 1059 LSSAERGTVIHAVMQHISLSQIPSEDDINKHLFYMVENELLTKEQANAVNIEEVLLFFES 1118 Query: 835 PMMTTAM-SCDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEY 883 P+ + + E+ S I+ ++ ++I G ID + + + + +Y Sbjct: 1119 PIGKRLINAEWVEREIPFSIGIDASNAYTDWGDSEEETVLIQGVIDCVFKDELGVVLLDY 1178 Query: 884 KTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVF 933 KT + + + Q+ +Y + ++ S+ NK + L + + Sbjct: 1179 KTDAIENRFSGGFQEAYATLKERYNTQMKLYIQAVEMSW-NKPVDEAHLYFFDGGYLL 1235 >gi|167761630|ref|ZP_02433757.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704] gi|167660773|gb|EDS04903.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704] Length = 1200 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 159/973 (16%), Positives = 314/973 (32%), Gaps = 111/973 (11%) Query: 37 LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL----TQKFTPQKNIITQEINKK 92 E + L+ + L++ + E+ + + L + + +K + I ++ Sbjct: 245 AVYEAALRSDLRIIEELRETRSFTELGEKMNSVKWMRLAANRDKAVSEEKAAKVKAIREE 304 Query: 93 SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 L + L + + +L + +EE K+ ++DF D+ Sbjct: 305 VKGLVKDLAGQYFCQDAPGILEDLQICRPAMEELASLVREFAERFEEKKRSKNMIDFSDM 364 Query: 153 IINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 +L + V + I + Q+ I+IDE QD++LIQ ++ S++ Sbjct: 365 EQYALRILTDKSDEGFVPSVIAREYQQQFLEIMIDEYQDSNLIQEAILTSIS-------T 417 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 +F VGD KQSIY F + P+ + + K I+L +FRS Sbjct: 418 VSEGRYNIFMVGDVKQSIYRFRLSRPELFMEKFNTYDTD----DSKTQRIDLHKNFRSRR 473 Query: 269 DILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 ++L V+ +F G+ D + + + S D+ Sbjct: 474 EVLEGVNYIFRQIMTRELGGIVYDDQAALYVGADYKDGENMETEVLVIDSNVDA------ 527 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRK 384 W ++ + + AR IA I +I + G+ R+ + DI++L R K Sbjct: 528 --WEDEAQAVRGITERELEARAIAGRIRELIHHHQVTDKKTGEFRLARYSDIVILTRSIK 585 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + + I R I ++ R + +Q D+ +L SP Sbjct: 586 G---FADVFTEVLSKEGIPTYAGTREGYFATQEIGVILDYLRVLDNQRQDIPLAAVLASP 642 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----KFQHVIKYIHELIHIAQFCSP 500 + +E+++ I + E A K + + + + Sbjct: 643 IGAMTEEELAIIRSSYKERPFFQAVSDYLAGGEDESIRGKLGRCLGQMEAFRKVVPYTPM 702 Query: 501 HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--- 556 H+ ++L G + LD E SY L I +EQ Sbjct: 703 HELLHMVLEKTGYGDYACAMPGGEQRKANLDMLAEKARVFESTSYKGLFHFIRYIEQLQK 762 Query: 557 --YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + VRIMT+H +KGLE P+VF+ G + + + + Sbjct: 763 YDVDYGEASIEDEQSDTVRIMTIHKSKGLEFPIVFVAGMGKRFNMQDARSSVVLHSKMGV 822 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 ++KS + + + K + E R+LYV +TRA ++LII +K Sbjct: 823 GLDAIHIANRTKSPSLVKKIIQKEEALDSLGEELRVLYVALTRAKEKLIITGTIPNLEKK 882 Query: 675 ------------KSNQRTWYDMVYDSFHNDERVKKIK----LTNSINKDEWIAYEWSTHH 718 S T++D + + + I + I K+E I Sbjct: 883 MPLYEMGITFGRLSKASTYWDWILPAVSSVPPEVPIAVKRIAFDDIVKEEVIEETAGRMT 942 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK----------- 767 + + I ++ + L + + K + Sbjct: 943 RAMLEAWNTSQVYDPAMHEAIKEQFGYQYPYAGSGMQKLKFTVSELKKRIYLKDSLGEEL 1002 Query: 768 -----------------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITS 807 + +RG H+L++++ E + + +++ Sbjct: 1003 DETGELLYEEPEVVPLIPRFLKEEEELTGASRGTAYHRLMELLDLAQDYGEAELADAVSA 1062 Query: 808 YCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDS----YSEVSVSGKINC---- 857 Y + + + I L + + E ++ Sbjct: 1063 YVEEGKM---DADMAACIRHGDILGFLNGGAGRRMKAAARAGTLWREQPFVLGVDAREMY 1119 Query: 858 ----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913 + I++ G ID + + +YKT E + + +QL Y K L+ Sbjct: 1120 PEEQEGELILVQGIIDAYFEESDGLVVLDYKTDQI--YTPEGLIERYHSQLDYYAKALEQ 1177 Query: 914 SYPNKSLVCLLIY 926 +K + +IY Sbjct: 1178 L-THKKVKEKIIY 1189 >gi|291548280|emb|CBL21388.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Ruminococcus sp. SR1/5] Length = 951 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 151/950 (15%), Positives = 318/950 (33%), Gaps = 131/950 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + + + + D ++L T + L K ++ K++ V Sbjct: 13 KALREDAKDNLKELGIRYFYGNLAELTELTEASAPPLEMLVKLTKDFAERFQAKKREKNV 72 Query: 147 LDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 LDF D+ D+L K++ ++ ++ ++ + +L+DE QD++L+Q +++ Sbjct: 73 LDFSDMEHFALDILLKKEGETYVPSQAARELSEKYDEVLLDEYQDSNLVQEILMQ----- 127 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 + + +F VGD KQSIY F A P+ + + + I+L Sbjct: 128 --TVSGWVNERKNIFMVGDVKQSIYRFRLARPELFMEKYKSYS----LEDSPEQRIDLHK 181 Query: 263 SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS ++L V+ +F E+ G++ D + +S + + + Sbjct: 182 NFRSRPEVLESVNFIFRQIMGEDLGGIAYDEAAALYPGASFPEGQ------DPEFVKTEI 235 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILV 378 + D E+ + A IA I +M+G + + G+ R +Q DI++ Sbjct: 236 LLVDKYSPLLEEEDEEVTENERELEALAIAGRIRSMVGHERVLDKETGEYRPLQYGDIVI 295 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L+R + + I V R + L+ R + + D+ Sbjct: 296 LLRSASGWA---ETFGEVLSARGIPVYTASRTGYFSATEVVTLLNYLRILDNPLQDIPMT 352 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------------SKFQHVIK 486 +L+SP+ + +++ ++ E + + K + Sbjct: 353 GVLRSPIVGCTTEELAELRIAYPEGMIYECVCRFVEDYRKHGSFEENKKILGEKLSCFMD 412 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS 545 ++ L A + H +L + G + L+ + + E+ SY Sbjct: 413 TMNTLRDKAAYTPVHQLILEVLARTGYGDHAKAMPNGEQRNANLNMLVEKAMEYEKTSYR 472 Query: 546 SLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + ++ Q + V+IMT+H +KGLE PVVF G + Sbjct: 473 GLFNFVRYIQKLQQYQVDYGEVNLSGTGESAVQIMTIHKSKGLEFPVVFAAGMGKRFNFR 532 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + I P L + + + + + + L + E R+LYV +TRA + Sbjct: 533 DMNASILIHPELGIGADAILPEKRIIAPSLCRQIIRRALLMESLGEELRVLYVALTRAKE 592 Query: 661 QLIICKHSNT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +LI+ S ++ +T++D V + + + Sbjct: 593 KLILSGTIGALYPELGELSALRDSEEPLLSLGRRLGGKTYWDYVLPALARHRCMAPLFHE 652 Query: 702 --------NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK----------- 742 N + KD E T E E ++ M ++ + Sbjct: 653 YGIFMNTANPLYKDPAEFKVTRVTARELTESEVMEQAEREMKKETLENWNPGRVFDSEIR 712 Query: 743 --------LFSPIKNDINEPYILNPSTI-------DTKGKTNLESLLSDN---------- 777 P + + P ++ S + + + ++ + Sbjct: 713 EEIQRRFSFVYPYQYLEDLPVKVSVSELKKRSYHSEQDLEETVDYETEEEIQPLVPRFIE 772 Query: 778 -------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL-LLSI 828 RG H++++ + R +A+ KE +++ + I Sbjct: 773 EKKEEGYTGALRGTAYHRVMECLDYQKTANRDEIRRQLREWVDARKMERKEAESVRVKDI 832 Query: 829 TRLLENPMMTTAMSCDSY----SEVSVSGKINCP--------KKDIIISGRIDQISISQQ 876 +E P+ + E ++++++ G ID I + Sbjct: 833 WNFVETPLGQRMKAASEKRLLFREQPFVIARKASELDPQWQCEENVLVQGIIDAYFIEDE 892 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 I + +YKT E + + + QL Y + L+ + + IY Sbjct: 893 EIVLVDYKTDFVRRGEEQKLIDRYHVQLEDYAQALERM-TGRKVKERYIY 941 >gi|327441306|dbj|BAK17671.1| ATP-dependent exoDNAse beta subunit [Solibacillus silvestris StLB046] Length = 1239 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 153/983 (15%), Positives = 316/983 (32%), Gaps = 121/983 (12%) Query: 55 QASQTQCIEERFSLLSSF------FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108 +A + E+ + L+ + LT+K T + KE L ++ F Sbjct: 277 KAMEEGSWEQAYELIPAVEFGRIKPLTKKDTEEDKQYYAVAKNHRDTAKEMLSDLKETFF 336 Query: 109 KIRDRFNTYKMF---KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK--- 162 + +M + L + +++AK++ +LDF DL ++L Sbjct: 337 ARHPKLYVQEMAATKPILETLVKLTIEYSEAFKKAKQERGLLDFSDLEHYALEILTDEES 396 Query: 163 ---RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 + + + + +L+DE QD + +Q +++ + KN +F V Sbjct: 397 TSNPPLPSDVALNFQKRFKEVLVDEYQDVNFLQETILQLV-------KNGGEQDGNMFMV 449 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD KQSIY+F AEP+ L + + ++ + G K I+L +FRS +++L + VF Sbjct: 450 GDVKQSIYAFRLAEPRLFLDKYKRFEEDPSGTGMK---IDLNANFRSRSEVLEGTNYVFE 506 Query: 280 IP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 E ++ D ++ +S Q ++L + Q + Sbjct: 507 QIMDEEVGEIAYDEQAKLKFGASYDEQQVPIELVLL-----EGDSKAQIIPGSEEGSEEE 561 Query: 338 QESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTR 394 SSA AR I I +++ N R + ++I+VL+R R + Sbjct: 562 SISSAQQEARYIIQRIRDLVDRGGQVYNPKTKSMRPVSYRNIVVLMRSRTWYTTFAEEFK 621 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + + + L + ++ + I + D+ +L++P +E+++ Sbjct: 622 ----LAGLPLYAETDGGYFESLEVMIMINTLKVIDNPYQDIPLASVLRAPFIGLTENELA 677 Query: 455 KICTQRHE-------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 KI + + E +K + ++ + D + Sbjct: 678 KIRLINGKVPFYEALKQYKEEATGDMPIETEAKLDKFFTMHQKWRQFSRHGALADLVWQV 737 Query: 508 LGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTI 561 + G + L + L E++S+ L + +++ I Sbjct: 738 YLDTNYYEMVGAMANGKQRQANLRALHDRALSYEKSSFRGLFRFLRFIDRMNSRGDDLGI 797 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 ++ S + V ++T+H +KGLE PVVF+ + + Sbjct: 798 AKSTSEADDVVTLLTIHKSKGLEYPVVFVAGMSRNFNTKDLGSRYIFDQDFGLAIKSVNP 857 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------- 674 S + + + + E R+LYV MTRA ++LI+ ++ Sbjct: 858 DLNIISTSLPHLYVKEKKLAKMKAEEMRVLYVAMTRAKERLILVGSIKDWEKQKEEWAFY 917 Query: 675 ------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------- 715 +S ++ V + S + Sbjct: 918 QELEETVLPAYIRSKANSYLSWVGPAVARHNDFLFADYGYSNEAATTEKWTVRIIPNRDY 977 Query: 716 --THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 + E E E + + K+ +P S + K +L+ + Sbjct: 978 LLANEAETVEQEVVEQAVNEELVELLTKRFTTPYPYANAVTKKSKTSVSEQKRLESLQQM 1037 Query: 774 LSDN---------------------------QTFNRGLIIHKLLQVIF---TLPEHKRKN 803 + G +H ++Q I + K Sbjct: 1038 EEEQLYNMEAKRYVKTDVPSFMLKGKKERKLSATEVGTAVHAVMQHIPQQGFASIEETKQ 1097 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPKKD- 861 +I S + + + + E + + E + + + D Sbjct: 1098 YIQSLVERQLLQQIEADAVSA-EKVFAFFETEIGGRFKKAKQVLREEPFTLSLKDQEGDA 1156 Query: 862 IIISGRIDQISISQQN-IFIFEYKTHHHVP---QEIEHIPYT----HIAQLSIYEKILKD 913 II G ID I + + +YKT + + E I + QL+ Y+ ++ Sbjct: 1157 QIIQGVIDCIFEDEHGNWVLLDYKTDYIEQYLLGDFEKIKQKMTKSYQIQLNYYQHAVQS 1216 Query: 914 SYPNKSLVCLLIYVSEPKVFIIP 936 + + +L S + I Sbjct: 1217 IKRIQIIDRILYLYSIGQEVKID 1239 >gi|323489925|ref|ZP_08095147.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2] gi|323396432|gb|EGA89256.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2] Length = 1202 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 154/970 (15%), Positives = 325/970 (33%), Gaps = 107/970 (11%) Query: 37 LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96 +E+ T + QT A + E ++ SF + + +K+ + +++ Sbjct: 252 AVLESTFRTDAEVIQTAIGALEN-SWESLYAFSKSFKWEKAASIRKDSCDPALAEEAKAR 310 Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDF 149 + +KK + ++ + + L + Y+ K ++DF Sbjct: 311 RNDVKKIVSGLFDAYFTRSPKRLLEEMREMAPLMKTLVELTQLFADQYKALKIDRALVDF 370 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL ++L + + I + +L+DE QDT+L+Q ++ + K+ Sbjct: 371 SDLEHYALEILMEEGEPSAIAKEYQDHFKEVLVDEYQDTNLLQETILNLV-------KSG 423 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F AEP L + + A N G I+L +FRS + Sbjct: 424 DEQNGNLFMVGDVKQSIYRFRLAEPMLFLGKYSRFRHDAENTGL---RIDLNANFRSRKE 480 Query: 270 ILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 IL + +FS + + D ++ ++ Q+ ++L + + + + Sbjct: 481 ILDGTNYIFSQIMGERVGEIDYDEAAALKAKAPYSEQLSPIELTLIHEPETEEELEDEDL 540 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRK 384 + + AR IA I+ ++ ++ + ++ K+R ++ +DI+VL+R Sbjct: 541 A------------KSQWEARFIAKKINELMNSEKMVNDPWTQKQRPLEYRDIVVLMRSMT 588 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + + + + L + ++ R I + D+ V +L++P Sbjct: 589 WSGDFVDEFKM----AGVPLYAELTGGYFEALEVMIMLNTLRVIDNPYQDIPLVSVLRAP 644 Query: 445 LFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498 E+++ +I + +T K + + + ++A+ Sbjct: 645 FIGLKENELAEIRLAAPQASFYEAVKTFMRAGTGIDPAAAEKLRRFMLQLEGWRNLARRG 704 Query: 499 SPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ- 556 S + + + G + L + L E+ S+ L + +++ Sbjct: 705 SLAELIWQVYLDTNYYEMVGAMTNGKQRKANLRALHDRALEYEKTSFRGLFRFLRFIDRM 764 Query: 557 ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 ++ S N VR+MTVH +KGLE PVVF TG K Sbjct: 765 RERGDDLGTAKSLSEKENVVRLMTVHKSKGLEFPVVFFAGTGRAFNEMDFKKSYLFDQDY 824 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 + + + + + + + E R+LYV MTRA + L + + Sbjct: 825 GLAVKAVNPDTRIEYTSLPFLAVREMKQLQMKAEEMRVLYVAMTRAKESLYMTASVKDID 884 Query: 673 E-----------------KKSNQRTWYDMVYDSFHNDERV-------------------- 695 + +S + + D + + Sbjct: 885 KLFEKWKVSTNEVRLPDFMRSRAKGYLDWIGPAVARHPDAEAQLNMTGNFLNHSSRFHIE 944 Query: 696 --------KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK-QLMDEQKIPKKLFSP 746 + + KDE + ++ E + + +Q + + Sbjct: 945 IIESQSLLPAVGNIEELLKDEEFSGDYQQQVNERFNFQYPHQLAVDKRSKQSVTEMKRLQ 1004 Query: 747 IKNDINEPYILNPSTIDTKGK---TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 + ++EP + + + G +H ++Q I R Sbjct: 1005 MLQRLDEPESFIQKVTPERKMLLHRPNFMMDKRLSGADIGTAVHAVMQHIPLDRTLNRNE 1064 Query: 804 FIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKK 860 I L P + + + R + + + EV + Sbjct: 1065 IIEFIETLVGMEILSPDEGKAVKVEELERFYASKTAARLRAATNIKREVPFTYAKKDADG 1124 Query: 861 DI-IISGRIDQISISQQNIFIFEYKTHHHVPQE--IEHIPYTHIAQLSIYEKILKDSYPN 917 D II G +D + Q + +YKT I + QL++Y++ ++ Sbjct: 1125 DHQIIQGIVDCLFEEQDGWVLLDYKTDRVTQITNIQNEISERYGVQLTVYQEAIESIL-K 1183 Query: 918 KSLVCLLIYV 927 + L+Y+ Sbjct: 1184 IPVQERLLYL 1193 >gi|313617565|gb|EFR89889.1| ATP-dependent nuclease subunit A [Listeria innocua FSL S4-378] Length = 885 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 137/898 (15%), Positives = 303/898 (33%), Gaps = 113/898 (12%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 L K ++ E K++ VLDF DL +L K + + ++ +LIDE Sbjct: 1 LSELVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKNGAPSDVANSYKKQFKEVLIDEY 60 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+++Q ++ +T N++ + LF VGD KQSIY F AEP + + + Q Sbjct: 61 QDTNMVQETILLLVT-------NSNDTKGNLFMVGDVKQSIYRFRLAEPTLFMAKYQEYQ 113 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIG 303 + +G I+L +FRS ++L + +F + + D + +S Sbjct: 114 QDGEGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDEAAELTLGASFPE 170 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + + + + S + + +R IA I MI Sbjct: 171 ANNMATELLLIDMKSEEKESEDEL-------SPQELQKNQVESRAIATKIREMIDNKFPI 223 Query: 364 SNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + K R IQ +DI++L R P + + I N+ + + Sbjct: 224 YDKKLQQNRPIQYRDIVILARAMTSAPDMEEAMK----IKDIPFYANNNSGYFETTEVAT 279 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----C 476 ++AL + I + D+S +L+SP+ +E+++ + + ++ + + + Sbjct: 280 MIALMKVIDNPYQDISLAAVLRSPIIGLNEEELGQXXXXPKKG-YFFDAMLAYKDITVSD 338 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535 +K I ++ ++ + I + G + L + Sbjct: 339 AANKISRFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLRALYDR 398 Query: 536 TLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 + E+ S+ L + +E+ + + VR+MT+H +KGLE PVV + Sbjct: 399 ANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIV 458 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + K + + + + E R+ Sbjct: 459 SGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKKSXXMIAEEMRV 518 Query: 651 LYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHN 691 LYV +TRA +++I+ + ++ + + D + ++ Sbjct: 519 LYVALTRAEEKIILTATVPDFEKTSKNWLQVSNQQETILPAAIRAKAKCYLDWIGNATIR 578 Query: 692 DERVKKI------------------------KLTNSINKDEWIAYEWSTHHPENTPLE-- 725 K++ LT+ + K++ + + + P++ Sbjct: 579 HSHFKELLCEEKIKTLPTDMKLQVEIKTKEMFLTDDLEKEKSDNWMENVKAHKQVPVKSP 638 Query: 726 -------------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 ++E ++ +Q + + D + Sbjct: 639 YKDEIERFMHYQYKDEEATEIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSLDRPKFL 698 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAKLWPAKEYKNL-LLSITR 830 + G +H L+Q + + K+ ++ + + + K + + I Sbjct: 699 QQNKLSATEIGTAMHTLMQAVPLDDKPTEKDLVSLLQLMREKDILTEAQIKAINVNQIIA 758 Query: 831 LLENPMMTTAMS--CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFI 880 E+ + T + EV S + + ++I G +D + + +I + Sbjct: 759 FFESALGKTVLQKKDKVKREVPFSYLLPAAKLYNQTNLDEHVLIQGVVDSMIEEEDSIIL 818 Query: 881 FEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 +YKT + + + Q+ +Y + ++ K L + + Sbjct: 819 IDYKTDKIEGRYDNWEAAEKVMKERYQIQIKLYAEAIQAISRKKVSHAYLYFFDGQHI 876 >gi|254557326|ref|YP_003063743.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1] gi|254046253|gb|ACT63046.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1] Length = 1249 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 157/1007 (15%), Positives = 304/1007 (30%), Gaps = 136/1007 (13%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFL-----TQKFTPQKNIITQEINKKSPDLKE 98 T K TL++ T E + +++F + T K P+K + + +K+ Sbjct: 263 ATAQKTLTTLREQLATASWNELRTQVATFKIGALKKTYKDEPEKTARAKTMGTFVDGVKK 322 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 ++ + + ++ M + + K + K++ VLDF DL Sbjct: 323 QMTTLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHL 382 Query: 156 TNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 T +L + ++ + +++DE QD + +Q +++ L P Sbjct: 383 TLQILTSDNESGQAALAQLRAQFEEVMVDEYQDINSLQESILQLLA---------RDQPG 433 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 +F VGD KQSIY F A+P L + + I L +FRS A++ + Sbjct: 434 NMFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEH----GERIVLAENFRSVANVDHLT 489 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + +FS +A D + + ++ + + E ++ Sbjct: 490 NLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQT-ETDKSTEDVSTDET 548 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + A +A I + D G+ R + D+ +LV R I Sbjct: 549 NFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALLVPTRNHNLTIID 608 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + + Y I VV ND I+ +MAL I + D+ V +L+SP+ E+ Sbjct: 609 VFK----RYHIPVVVNDAQNYFQTTEIRIMMALLSIIDNPYQDIPLVAVLRSPIVGLDEN 664 Query: 452 DIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIAQFCSP 500 + + Q ++ ++ + +K + + + E +A+ Sbjct: 665 QLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQLTEFRDLARRNQI 724 Query: 501 HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 I G + L EQ S+ L + + + + Sbjct: 725 VTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGLFQFVRFIRRMQE 784 Query: 560 TIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + + V +MT+H +KGLE PV+F++D Q + Sbjct: 785 KDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTRSSALLDREAGIG 844 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 + K + + K + E R LYV MTRA QL + + Sbjct: 845 ITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQQLYLVGTIKDIDTAT 904 Query: 676 SNQR----------------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 R W M + + N D+ Sbjct: 905 EKWRQAFASDGRVLSAQARIAATNQLDWVGMAVIRHPAMKAYWGDEWPNYELTDDPTKLA 964 Query: 714 WSTHHPENTPLEREETIKQLMDEQ--------------------KIPKKLFSPIKNDINE 753 E+ E + + P + Sbjct: 965 VELGDATTVLAEQSEAVTDTQPDALELVEQQVTIDVDQVTRDYLTTLLNFHYPHQASTTT 1024 Query: 754 PYILNPSTIDTKGKTN-------------------------------LESLLSDNQTFNR 782 + S + + + + Sbjct: 1025 TAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSLELPQFLQTMQAPTSAEV 1084 Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTT 839 G H +L+ + L + + + S N L + +I ++ + + Sbjct: 1085 GSATHLVLEQL-DLTKPVNETTVQSTIDGLVANRVLTTNVAKLIAVDTIVAFYQSALGSQ 1143 Query: 840 AMS--CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 + + EV S I ++I G ID + + +F+YKT H Sbjct: 1144 ILDNPAKVHREVPFSLLIPARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV 1203 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + E + + Q+ +Y L YP K L + + + Sbjct: 1204 --KRPEELKTRYAGQVKLYAAALASMYPGKVTKQYLYSLPQQVFVPV 1248 >gi|28379194|ref|NP_786086.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1] gi|81630835|sp|Q88U41|ADDA_LACPL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|28272032|emb|CAD64937.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1] Length = 1249 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 158/1007 (15%), Positives = 304/1007 (30%), Gaps = 136/1007 (13%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFL-----TQKFTPQKNIITQEINKKSPDLKE 98 T K TL++ T E + +++F + T K P+K + + +K+ Sbjct: 263 ATAQKTLTTLREQLATASWNELRTQVATFKIGALKKTYKDEPEKTARAKTMGTFVDGVKK 322 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 ++ + + ++ M + + K + K++ VLDF DL Sbjct: 323 QMTTLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHL 382 Query: 156 TNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 T +L + S ++ + +++DE QD + +Q +++ L P Sbjct: 383 TLQILTSDNESSQAALAQLRAQFEEVMVDEYQDINSLQESILQLLA---------RDQPG 433 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 +F VGD KQSIY F A+P L + + I L +FRS A++ + Sbjct: 434 NMFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEH----GERIVLAENFRSVANVDHLT 489 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + +FS +A D + + ++ + + E ++ Sbjct: 490 NLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQT-ETDKSTEDVSTDET 548 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + A +A I + D G+ R + D+ +LV R I Sbjct: 549 NFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALLVPTRNHNLTIID 608 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + + Y I VV ND I+ +MAL I + D+ V +L+SP+ E+ Sbjct: 609 VFK----RYHIPVVVNDAQNYFQTTEIRIMMALLSIIDNPYQDIPLVAVLRSPIVGLDEN 664 Query: 452 DIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIAQFCSP 500 + + Q ++ ++ + +K + + + E +A+ Sbjct: 665 QLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQLTEFRDLARRNQI 724 Query: 501 HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 I G + L EQ S+ L + + + + Sbjct: 725 VTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGLFQFVRFIRRMQE 784 Query: 560 TIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + + V +MT+H +KGLE PV+F++D Q + Sbjct: 785 KDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTRSSALLDREAGIG 844 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 + K + + K + E R LYV MTRA QL + + Sbjct: 845 ITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQQLYLVGTIKDIDTAT 904 Query: 676 SNQR----------------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 R W M + + N D+ Sbjct: 905 EKWRQAFASDGRVLSAQARIAATNQLDWVGMAVMRHPAMKAYWGDEWPNYELTDDPTKLA 964 Query: 714 WSTHHPENTPLEREETIKQLMDEQ--------------------KIPKKLFSPIKNDINE 753 E+ E + + P + Sbjct: 965 VELGDATTVLAEQSEAVTDTQPDALELVEQQVTIDVDQVTRDYLTTLLNFHYPHQASTTT 1024 Query: 754 PYILNPSTIDTKGKTN-------------------------------LESLLSDNQTFNR 782 + S + + + Sbjct: 1025 TAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSLELPQFLQTTQAPTSAEV 1084 Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTT 839 G H +L+ + L + + + S N L + +I ++ + + Sbjct: 1085 GSATHLVLEQL-DLTKPVNETTVQSTIDGLVANRVLTTNVAKLIAVDTIVAFYQSALGSQ 1143 Query: 840 AMS--CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 + + EV S I ++I G ID + + +F+YKT H Sbjct: 1144 ILDNPAKVHREVPFSLLIPARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV 1203 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + E + + Q+ +Y L YP K L + + + Sbjct: 1204 --KRPEDLKTRYAGQVKLYAAALASMYPGKVTKQYLYSLPQQVFVPV 1248 >gi|311067549|ref|YP_003972472.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942] gi|310868066|gb|ADP31541.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942] Length = 1234 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 153/1033 (14%), Positives = 321/1033 (31%), Gaps = 137/1033 (13%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTIL------KKAQTLQQASQTQCIEERFSLLSS 71 +D+ + + + + L+ G P AQT + + E + + + Sbjct: 224 EDIAMVLSAVKEKLQRALELTKVPGGPAPRADNFLDDLAQTEDLIAHSADFTELYKRVPA 283 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKSTL 124 + + + Q + +++ DL+ KK ++ + M Sbjct: 284 VSFKRAKAVKGDEFDQALTEEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLSDMKPVIE 343 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEINH 179 + L +E AK++ ++DF DL +L + ++ Sbjct: 344 TLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLSILTAVNESGERKPSEAAAYYQEQFQE 403 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +L+DE QDT+L+Q +++ +T + + LF VGD KQSIY F AEP L Sbjct: 404 VLVDEYQDTNLVQEAILQLVT-------SGPEASGNLFMVGDVKQSIYRFRLAEPLLFLS 456 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + + G I+L +FRS ADIL + +F + D + Sbjct: 457 KYKRFTETGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKVGEVDYDEQAELKL 513 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + + + + + + A+ IA I ++ + Sbjct: 514 GAS--------YPPNDQTETELLLIDRAEEKEASEETEELETVQLEAKAIAKQIQKLVSS 565 Query: 360 DTIFSNGKKR---VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 +GK + I+ +DI++L+R P I + I V N + + Sbjct: 566 PYKVYDGKSKTHSNIRYRDIVILLRSMPWAPQIMEELKA----QGIPVYANLTSGYFEAV 621 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ----- 471 + ++ + I + D+ +L+SP+ E+++ I + Sbjct: 622 EVSVAISALKVIDNPYQDIPLASVLRSPIVGADENELSLIRMHNKKAPFYEAMKDYLSGG 681 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + K + + + ++ S + + K G + L Sbjct: 682 DRNDELYQKLNAFFELLQKWRSFSKNHSVSELIWEVYRDSKYMDYVGGMPGGKQRQANLR 741 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585 + + E ++ L + +E+ RA S + VR+MT+H++KGLE Sbjct: 742 VLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEF 801 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVVF G K + L + + + K +++ Sbjct: 802 PVVFAAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPEWRLSYPTLPLIAMKKKMRRELLS 861 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKIKLTN 702 E R+LYV +TRA ++L + ++ + + D + F + + Sbjct: 862 EELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQASASQPDWLLPDFERYQAKTYLDFIG 921 Query: 703 SI-------------------------------------NKDEWIAYEWSTHHPENTPLE 725 D+ + + Sbjct: 922 PALIRHRDMGTDALQGLASQADISEHPARFNIQMVSAQDLLDDDLEERQEEKSGRLDAIR 981 Query: 726 REETIKQLMDEQKIPKK---LFSPIKNDINEPYILNPSTIDTKGK--------------- 767 R E + + ++ ++ P + + S I K + Sbjct: 982 RGEPVSGSFEFEEQARQRLSWRYPYHDVTKIRTKQSVSEIKRKKEYEDEYSGRSLIRPAD 1041 Query: 768 ------TNLESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAK 819 + +G +H ++Q I P + I + L + Sbjct: 1042 GNMLYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLTHAPSKEEAERIVKRLYEKELLTEDQ 1101 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIISGRID 869 + L I + + + EV S ++ + I++ G ID Sbjct: 1102 QAVIDLEEIVQFFHTEIGEKLIGAKWINREVPFSMALSAQDAFLDTESKDEPILVQGIID 1161 Query: 870 QISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 + + + +F+ +YKT + + Q+ +Y K ++ Sbjct: 1162 CLYETDEGLFLLDYKTDRIEGKFQHGFEGAAPILKKRYETQIELYTKAVEQITKTNVKGR 1221 Query: 923 LLIYVSEPKVFII 935 L + V + Sbjct: 1222 ALYFFDGGHVLNV 1234 >gi|300768583|ref|ZP_07078482.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493890|gb|EFK29059.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1249 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 158/1007 (15%), Positives = 303/1007 (30%), Gaps = 136/1007 (13%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLS-----SFFLTQKFTPQKNIITQEINKKSPDLKE 98 T K TL++ T E + ++ + T K P+K + + +K+ Sbjct: 263 ATAQKTLTTLREQLATASWNELRTQVATFKIGALKKTYKDEPEKTARAKTMGTFVDGVKK 322 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 ++ + + ++ M + + K + K++ VLDF DL Sbjct: 323 QMTTLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHL 382 Query: 156 TNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 T +L + S ++ + +++DE QD + +Q +++ L P Sbjct: 383 TLQILTSDNESSQAALAQLRAQFEEVMVDEYQDINSLQESILQLLA---------RDQPG 433 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 +F VGD KQSIY F A+P L + + I L +FRS A++ + Sbjct: 434 NMFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEH----GERIVLAENFRSVANVDHLT 489 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + +FS +A D + + ++ + + E ++ Sbjct: 490 NLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQT-ETDKSTEDVSTDET 548 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + A +A I + D G+ R + D+ +LV R I Sbjct: 549 NFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALLVPTRNHNLTIID 608 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + + Y I VV ND I+ +MAL I + D+ V +L+SP+ E+ Sbjct: 609 VFK----RYHIPVVVNDAQNYFQTTEIRIMMALLSIIDNPYQDIPLVAVLRSPIVGLDEN 664 Query: 452 DIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIAQFCSP 500 + + Q ++ ++ + +K + + + E +A+ Sbjct: 665 QLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQLTEFRDLARRNQI 724 Query: 501 HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 I G + L EQ S+ L + + + + Sbjct: 725 VTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGLFQFVRFIRRMQE 784 Query: 560 TIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + + V +MT+H +KGLE PV+F++D Q + Sbjct: 785 KDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTRSSALLDREAGIG 844 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 + K + + K + E R LYV MTRA QL + + Sbjct: 845 ITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQQLYLVGTIKDIDTAT 904 Query: 676 SNQ---------------------------------RTWYDMVYDSFHNDERVKKIKLTN 702 D + N E Sbjct: 905 EKWRQAFASDGRVLSAQARIAATNQLDWVGMAVIRHPAMKAYWGDEWPNYELTDDPTKLA 964 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQL---------MDEQKIPKKLFSPIKNDINE 753 D + T + E ++Q D P + Sbjct: 965 VELGDATTVLAEQSEAVSGTQPDALELVEQQVTIDVDQVTRDYLTTLLNFHYPHQASTTT 1024 Query: 754 PYILNPSTIDTKGKTN-------------------------------LESLLSDNQTFNR 782 + S + + + + Sbjct: 1025 TAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSLELPQFLQTMQAPTSAEV 1084 Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTT 839 G H +L+ + L + + + S N L + +I ++ + + Sbjct: 1085 GSATHLVLEQL-DLTKPVNETTVQSTIDGLVANRVLTTNVAKLIAVDTIVAFYQSALGSQ 1143 Query: 840 AMS--CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 + + EV S I ++I G ID + + +F+YKT H Sbjct: 1144 ILDNPAKVHREVPFSLLIPARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV 1203 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + E + + Q+ +Y L YP K L + + + Sbjct: 1204 --KRPEELKTRYAGQVKLYAAALASMYPGKVTKQYLYSLPQQVFVPV 1248 >gi|295401125|ref|ZP_06811099.1| recombination helicase AddA [Geobacillus thermoglucosidasius C56-YS93] gi|294976918|gb|EFG52522.1| recombination helicase AddA [Geobacillus thermoglucosidasius C56-YS93] Length = 1238 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 141/1030 (13%), Positives = 334/1030 (32%), Gaps = 131/1030 (12%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70 ++ + + L + + + L+ L+ + + +E + Sbjct: 235 DAAKRLVSKALQLANLPGGPLPRAENYRD------DLRIIAHLETLLE-RSWDELYEAFQ 287 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS---T 123 S L++ + + + ++ +++ L+++ L+ +D +R + M + Sbjct: 288 SLSLSRLKSCRGDEYDPQLLEEANSLRDQAKKKLESLRDNVFSLRPATWLHHMREMKPIV 347 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA------WIRYKIDQEI 177 + L K ++ K++ ++DF DL +L+ D + + Sbjct: 348 ETIVRLVKRFAEMFQARKREKGIVDFSDLEHYCLQILRHPDSADGQWLPSDAALDYRAQF 407 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +L+DE QDT+++Q +++ + LF VGD KQSIY F AEP Sbjct: 408 IEVLVDEYQDTNMVQEAILQLVA-----------KGGNLFMVGDVKQSIYRFRLAEPLLF 456 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 L + + T+ I+L +FRS A++L + +F + T Sbjct: 457 LSKYKRFTADGTH---PGMKIDLSNNFRSRAEVLHGTNFIFKQIMGETVGEIEYDETAEL 513 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + + + +++ + ++ D + A ++A++I +S + Sbjct: 514 KYGAVDYPDSEHAAPELIVIDRNSEEGEESGELDANDLAAAQLEARMMAKKIKEIVSEPL 573 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + R +DI++L+R P I R I V + Sbjct: 574 -HVFDRKAKRMRRAMYRDIVILLRSMTAAPQIMEEFRA----QGIPVYADLSSGYFQATE 628 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--------Y 469 I +++L + I + D+ +L+SP+ +E+++ I + Sbjct: 629 IAVMLSLLKVIDNPYQDIPLASVLRSPIVGLNENELALIRIHEKKGTFYEAMMSFLHKAA 688 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 K K + + +H+ +A+ S D + G + Sbjct: 689 DNKEEEMLQQKLRLFSEQLHQWRTMARQRSLADVIWQLYRDTHFYDFVGGLPGGKQRQAN 748 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGL 583 L + + E S+ L + +E+ RA + VRIMT+H++KGL Sbjct: 749 LRALYDRARQYEATSFRGLFRFLRFIERLQERGDDLGAARALGEQEDVVRIMTIHSSKGL 808 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P+VF+ + + L + + + + Sbjct: 809 EFPIVFVAGLARPFNTRDLYGSYLLDKELGFAARFVDPKLRISYPTLPQIAIRQKKRLDY 868 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDM 684 E R+LYV +TRA ++L + + ++ ++ R + D Sbjct: 869 LAEEMRILYVALTRAKEKLYLVAAVKDAQKEIDKWKSTAAEEEWLLPDDVRAAARCYLDW 928 Query: 685 VYDS-------------------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 + + + V +I + + + T L+ Sbjct: 929 IGRALIRHRDGQRLGDLSHVCREVASHPSVWRITIVPARELHDANQETERLDEQIATALK 988 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG------------------- 766 R E + +++ + L + + + K Sbjct: 989 RGERVPTGGYAEEVQRLLSWKYAYEKETLVRAKQAVSELKRHREIFGENADIMLLHSFST 1048 Query: 767 ---KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYK 822 + + +G +H +++ + + +L ++ + Sbjct: 1049 PLFERPMFMREKTLTPAEKGTAMHIVMRHVDLTVPITEEAVREQIAKLVQMELLTHEQAE 1108 Query: 823 NL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGRIDQI 871 + + SI + + + + E+ S + + +I++ G ID + Sbjct: 1109 AVNVSSIVAFFDTEIGKRLRTASEVHREIPFSLALPAKEVYGDGVGKEGNILVQGVIDCL 1168 Query: 872 SISQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 ++ + + ++KT + + + + Q+ +Y + ++ + C L Sbjct: 1169 FADEKGLVLIDFKTDAVNRFAGGWREAKQVMLSRYQTQMQLYRRAVEQIWKMNVDECYLY 1228 Query: 926 YVSEPKVFII 935 + I Sbjct: 1229 LFDGSHLLPI 1238 >gi|150391860|ref|YP_001321909.1| recombination helicase AddA [Alkaliphilus metalliredigens QYMF] gi|251764495|sp|A6TVN2|ADDA_ALKMQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|149951722|gb|ABR50250.1| Recombination helicase AddA [Alkaliphilus metalliredigens QYMF] Length = 1197 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 161/995 (16%), Positives = 335/995 (33%), Gaps = 124/995 (12%) Query: 27 QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL------------ 74 + +N +S++ E G P + ++A L Q + + +L + F Sbjct: 224 AMDLLNNALSIAQEPGGPEVYEEA-ILSDLGQISELYDSLTLPITSFYEHLNHINHARLK 282 Query: 75 -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 +++ P ++ + K+ + + +K + + K+ L Sbjct: 283 PSKESDPVLKEESKNLRDKAKGIIKDIKDNIFTVSPEAYVEDLNKLHPLMDYLYQLVTGF 342 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 + Y + K ++DF DL ++L + + Q +I +DE QD++++Q Sbjct: 343 TSRYAQKKADRGIVDFNDLEHYGLEILANE----LVAQEYQQRFEYIFVDEYQDSNIVQE 398 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 +I+S+ LF VGD KQSIY F A+P + + ++ + Sbjct: 399 TLIQSIKRKD-----------NLFMVGDVKQSIYRFRLADPSLFIEKYETFGEKEGDIN- 446 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I+L +FRS ++L V+ +F + + HR++ + E Sbjct: 447 --RRIDLAKNFRSRGEVLAGVNYLFKYIMSKELGEIGYD----HRAALYQGASFESIKEP 500 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQ 372 + + + N E + L + + + AR IA I +++ + + R ++ Sbjct: 501 SIEVNLIEKN--MEIDEDIEEELQELADIEVEARIIAKRIKDLLNEEIYDEKNEVYRRLE 558 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KDI+VL+R K+ I + + + + + L + I ++ Sbjct: 559 FKDIVVLLRTTKNWA---QSFLEAFIREGIPAYADANTGYFEAIEVGMFLNLLKVIDNKR 615 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----VIKYI 488 D+ + +++SP+ F+ ++ I + T Y+ I+K+ + I+ + Sbjct: 616 QDIPLISVMRSPIGEFTTAELIDI-RINDKNGTYYDAIEKYIEKNEDALKDKLVSFIEKL 674 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 ++ + A++ F +L G + L + + E+ S L Sbjct: 675 NKWGNEARYIKIDQFIWKLLMDTGFYYYVGAMPGGLQRQANLRILFDRASQFEKTSIKGL 734 Query: 548 QELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 I +E+ + N N VRIM++H +KGLE PVV G Sbjct: 735 FNFIKFIEKLQGSKGDMGAAKILGENDNVVRIMSIHKSKGLEFPVVIAAGMGKNFNLRDT 794 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + + L P ++ + + +K + E R+LYV TR D+L Sbjct: 795 SADVLLHKDLGLGPKFVDSNLRTYRDSIAKLAMKDQIKIESLSEEMRILYVAFTRPKDKL 854 Query: 663 IICKHSNTSNEKKSNQR------------TWYDMVYDSFHNDERVKKIKLTNSINKDE-- 708 II + +N ++ D + + + ++ +E Sbjct: 855 IIVGSLRKIDRLVTNWNQADNIYSLMNAKSYLDWIGAALIKHPHGEVLRELGDFEFNELK 914 Query: 709 --WIAYEWSTHHPENTPLEREETIKQLMDEQ-------------------------KIPK 741 +W+ + + EE K+L +E+ Sbjct: 915 YKAEDSKWTVNILGRQAVVLEEHEKRLKEEEYKEKLTHFNREDFSPHRHTEHKEEIDNRL 974 Query: 742 KLFSPIKNDINEPYILNPSTIDTK----------------GKTNLESLLSDNQTFNRGLI 785 P P L+ S I RG I Sbjct: 975 NWQYPYPQATVIPSKLSVSDIKKANMGEMDSIVHQIPTLVKTPKFMEGKKALTAAERGTI 1034 Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM-S 842 IH +LQ + + A+ +E ++ I ++ + + + Sbjct: 1035 IHFVLQHLALNQVGSEEEISQQIDLMVARELITEEEAQVVNVGKIVNYFKSEIGKRMLGA 1094 Query: 843 CDSYSEVSVSGKINCPK----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 Y E + + + +++ G ID + + +YK + + Sbjct: 1095 EKVYRESPFIIEKSAKDVIHGLSENLEEKLLVQGVIDCYFEEMDGLVLVDYKNDIVLNGD 1154 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 I + QL +Y + L+ K + +Y+ Sbjct: 1155 TASIMTRYDVQLMMYAEALERI-TGKQVKETYLYL 1188 >gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905] gi|126590704|gb|EAZ84819.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905] Length = 1238 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 150/1016 (14%), Positives = 318/1016 (31%), Gaps = 112/1016 (11%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74 + + + + + Q + SQ +E F ++ Sbjct: 236 SLEEAFVLISEMRAITLQPDGPAPYAETAEIDFAMIQEGIRISQEGTWQELFDYFATVKW 295 Query: 75 -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-------AS 126 T K + ++ E+ + + +E KK ++ + ++ + Sbjct: 296 STLKRVSKDALVDVELQEHAKKKREAAKKIMNKMKETYFIRTPARLLEEIRLMAPIIGTL 355 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA----WIRYKIDQEINHILI 182 + L + + AK + ++DF DL +L + + + +L+ Sbjct: 356 VELTTIFSEQFRLAKLERGIIDFSDLEHYALQILTVEIDGELQPSPVALDLKKRFKEVLV 415 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+++Q +++ + K+ LF VGD KQSIY F AEPK R Sbjct: 416 DEYQDTNMLQETILQLV-------KSGEEQDGNLFMVGDVKQSIYRFRLAEPKL---FMR 465 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSS 300 + I+L +FRS ++L + +F+ + + D +++ + Sbjct: 466 KYSEFLETPEVTGMRIDLNANFRSRKEVLNATNYIFAQIMGERVGEILYDDNASLKPAAP 525 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + V+L D + +QE T L + + AR I I M+ Sbjct: 526 YDEKEVPVELVVMHPP-QDEEVVDEQEDKTEEATELEELKKSQYEARFIIDRIRQMMEDG 584 Query: 361 TIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 T + K +R ++ DI++L+R + I + D L Sbjct: 585 TTVYDTKSLTERPLKYSDIVILMRSMTWSTD----LVEEFKLAGIPLYAESSKGYFDALE 640 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYI 470 + ++ + + + + D+ +L++P +E+++ KI + + + Sbjct: 641 VMIMLNVLKVVDNPYQDIPLASVLRAPFVGLTENELAKIRLADSKVPFYDALRQFIRSEG 700 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529 Q+ K Q + +A+ S D I + G + L Sbjct: 701 QEIQTTTFEKLQRFMLAFENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANL 760 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + L EQ ++ L + +++ ++ + VR++T+H++KGLE Sbjct: 761 RILHDRALMYEQTAFRGLFRFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGLE 820 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVF+ G + + L + + + Sbjct: 821 YPVVFVAGMGRPFNKMDFHNPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEMR 880 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEK--------------------KSNQRTWYDM 684 E R+LYV MTRA ++LI+ + ++ ++ D Sbjct: 881 AEEMRVLYVAMTRAKERLILVGSVKNWEKTRDNWQDAQNISSDAPLQEYLRARANSYLDW 940 Query: 685 VYDSFHNDERVK----------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 V + I + Y + ++ + T + Sbjct: 941 VGPAVARHGDFASQATTSYKELDSPSHWWIQPVDTRHYSYDIQPFDDDIQQLLTTQEDEA 1000 Query: 735 DEQKIPKKLFSPI------------------------KNDINEPYILNPSTIDTKGKTNL 770 +I + + + + E Y P+ + Sbjct: 1001 LLSEITTRFQAQYTYQKSTRKRSKTSVSEIKRIENLQRQEEPEYYFAPPAKQTSASIAPR 1060 Query: 771 ESLLSDN--QTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPAKEYKNLLL 826 + L D G +H ++Q I + L A+ + Sbjct: 1061 PTFLQDQQLTGAEIGTAVHTVMQHIPQFGFDDIGAVKGFVADLVAKQLLTEAEGKVVPIA 1120 Query: 827 SITRLLENPMMTTA-MSCDSYSEVSVSG-KINCPKKDIIISGRIDQISISQ-QNIFIFEY 883 + + + E+ + +++ I+ G ID + + N + +Y Sbjct: 1121 KVFHFFHTEIGQRFKQARQIRREMPFTISRVDEDGDAQIVQGIIDCLFEDEYGNWVLLDY 1180 Query: 884 KTHHH------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 KT P + I + QL +Y + ++ K +L + Sbjct: 1181 KTDRILPHFAKEPALTKEIMGRYAVQLRVYSEAIESILQIKVSDKVLYLFDNEQTV 1236 >gi|312112099|ref|YP_003990415.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1] gi|311217200|gb|ADP75804.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1] Length = 1238 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 142/1030 (13%), Positives = 334/1030 (32%), Gaps = 131/1030 (12%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70 ++ + + L + + + L+ L+ + + +E + Sbjct: 235 DAAKRLVSKALQLANLPGGPLPRAENYRD------DLRIIAHLETLLE-RSWDELYEAFQ 287 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS---T 123 S L++ + + + ++ +++ L+++ L+ +D +R + M + Sbjct: 288 SLSLSRLKSCRGDEYDPQLLEEANSLRDQAKKKLESLRDNVFSLRPATWLHHMREMKPIV 347 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA------WIRYKIDQEI 177 + L K ++ K++ ++DF DL +L+ D + + Sbjct: 348 ETIVRLVKRFAEMFQARKREKGIVDFSDLEHYCLQILRHPDSADGQWLPSDAALDYRAQF 407 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +L+DE QDT+++Q +++ + LF VGD KQSIY F AEP Sbjct: 408 IEVLVDEYQDTNMVQEAILQLVA-----------KGGNLFMVGDVKQSIYRFRLAEPLLF 456 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 L + + T+ I+L +FRS A++L + +F + T Sbjct: 457 LSKYKRFTADGTH---PGMKIDLSNNFRSRAEVLHGTNFIFKQIMGETVGEIEYDETAEL 513 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + + + +++ + ++ D + A ++A++I +S + Sbjct: 514 KYGAVDYPDSEHAAPELIVIDRNSEEGEESGELDANDLAAAQLEARMMAKKIKEIVSEPL 573 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + R +DI++L+R P I R I V + Sbjct: 574 -HVFDRKAKRMRRAMYRDIVILLRSMTAAPQIMEEFRA----QGIPVYADLSSGYFQATE 628 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--------Y 469 I +++L + I + D+ +L+SP+ +E+++ I + Sbjct: 629 IAVMLSLLKVIDNPYQDIPLASVLRSPIVGLNENELALIRIHEKKGTFYEAMMSFLHKAA 688 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 K K + K +H+ +A+ S D + G + Sbjct: 689 DNKEEEMLQQKLRLFSKQLHQWRTMARQRSLADVIWQLYRDTHFYDFVGGLPGGKQRQAN 748 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGL 583 L + + E S+ L + +E+ RA + VRIMT+H++KGL Sbjct: 749 LRALYDRARQYEATSFRGLFRFLRFIERLQERGDDLGAARALGEQEDVVRIMTIHSSKGL 808 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P+VF+ + + L + + + + Sbjct: 809 EFPIVFVAGLARPFNTRDLYGTYLLDKELGFAARFVDPKLRISYPTLPQIAIRQKKRLDY 868 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDM 684 E R+LYV +TRA ++L + + ++ ++ R + D Sbjct: 869 LAEEMRILYVALTRAKEKLYLVAAVKDAQKEIDKWKSTAAEEEWLLPDDVRAAARCYLDW 928 Query: 685 VYDS-------------------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 + + + V +I + + + T L+ Sbjct: 929 IGRALIRHRDGQRLGDLSHVCREVASHPSVWRITIVPARELHDANQETERLDEQIATALK 988 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG------------------- 766 R E + +++ + L + + + K Sbjct: 989 RGERVPTGGYAEEVQRLLSWKYAYEKETLVRAKQAVSELKRHREIFGENADIMLLHSFST 1048 Query: 767 ---KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYK 822 + + +G +H +++ + + +L ++ + Sbjct: 1049 PLFERPMFMREKTLTPAEKGTAMHIVMRHVDLTVPITEEAVREQIAKLVQMELLTHEQAE 1108 Query: 823 NL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGRIDQI 871 + + SI + + + + E+ S + + +I++ G ID + Sbjct: 1109 AVNVSSIVAFFDTEIGKRLRTASEVHREIPFSLALPAKEVYGDGVGKEGNILVQGVIDCL 1168 Query: 872 SISQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 ++ + + ++KT + + + + Q+ +Y + ++ + C L Sbjct: 1169 FADEKGLVLIDFKTDAVNRFAGGWREAKQVMLSRYQTQMQLYRRAVEQIWKMNVDECYLY 1228 Query: 926 YVSEPKVFII 935 + I Sbjct: 1229 LFDGSHLLPI 1238 >gi|210623665|ref|ZP_03293974.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275] gi|210153430|gb|EEA84436.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275] Length = 1256 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 156/968 (16%), Positives = 327/968 (33%), Gaps = 133/968 (13%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY----------KMFKSTLA 125 +K K E+ + E K++ + K+ + + + A Sbjct: 295 RKGKKIKKDDPDEMREAWKIATEYRKEAIESMKKVAEMYKNRYSKDIKKEIDMSYPIVRA 354 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHI 180 +EEAK+ ++DF D+ ++L D + + +E I Sbjct: 355 ISDAVLEFWKKFEEAKRDKGIIDFNDIEHFALEILVDEDENGRQIPSETAKRYSEEFKEI 414 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 +DE QD++L+Q ++ S+ + F VGD KQSIY F A+P+ Sbjct: 415 FVDEYQDSNLVQEAILSSIA---------NKEMPNRFMVGDVKQSIYRFRQAKPEI---F 462 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHR 298 + +T + I L +FRS ++L V+ +F + + + + Sbjct: 463 LHKYETYSTEKDKDGRKIMLYKNFRSRKNVLDAVNFIFENIMSKELGEIEYNDDEKLNPG 522 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + + H + + + + I AR I I ++G Sbjct: 523 AVFEECYEENAIVGGSCDVHIIEKKANENLTDEQLEEEEDLDNIQIEARAIGKIIKEIVG 582 Query: 359 TD--------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 + + R + KDI++L+R + + + I V + Sbjct: 583 KNSDGKIQMVYDKEEKRYRQAKYKDIVILLRATSNWA---SVLTEEFTNMDIPVYADTGT 639 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 D + IK +++L + I + D+ + +LKSP++NF+ +++ I + + YE + Sbjct: 640 GYFDTIEIKTIVSLLKVIDNPMQDIPLLAVLKSPIYNFTPEELIDI-RIVNRNVSFYEAM 698 Query: 471 Q---KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 + F +C K + ++ + + + + S + + G + Sbjct: 699 KIYASFDDCDNKKVRDFLERLDDYQERSSYLSTDELLWYLYNETGYYAYAAILPAGKQRQ 758 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + E S+ + I+ +E+ + S N + VRIM++H +K Sbjct: 759 ANLRILFERAKQFEDTSFKGIFNFINFVEKLKKSDSDMGEAKTLSENADVVRIMSIHKSK 818 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE P+V G + + + L P + + + + + K + Sbjct: 819 GLEFPIVICGGMGKRFNKMDMNRGILYHHELGYGPQVVNLETRLSYPSMMKEAMKKQMVV 878 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR---------------------T 680 E R+LYV TRA ++LII N + + Sbjct: 879 EMLSEEMRVLYVAFTRAKEKLIITGAVNDVEKNLQKWASNSQKVTKNNKLDRYNLLKSAS 938 Query: 681 WYDMVYDSFHNDERVKKIKLTNS--INKDEWIAYEWSTHHPENTPLEREETIK------- 731 + D + + + I +S + K++ +++ H E+ L E+ + Sbjct: 939 FLDWIMSVAIAHKDARGILPLDSEIVEKNDESEWKFKIHQREDYTLSSEDEEEINLADVL 998 Query: 732 ----------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------ 775 + + P + + + ++ + I E L Sbjct: 999 REELTSSREVDYSEIVRNRLDFKYPYQKSVEKSGSISVTEIKRLWNLEREDNLEIDINEI 1058 Query: 776 -----------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812 +RG ++H ++Q+I Sbjct: 1059 ESSRNNKKTEIKRPKFIQENKDEKLSPTHRGSVVHLVMQIINMDRVSTIDEIKNQIEEFV 1118 Query: 813 AKLWPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKINCP----------K 859 K ++ +++ I + ++ + T + D E + +IN Sbjct: 1119 QKEIITQKEADVVNPFKIYKFFKSELGTRMKNADFVGREKAFYTEINMKNLFAKEGIDYD 1178 Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 + I++ G ID I + +YKT + E + + QL IY K++++ +K Sbjct: 1179 ESIMLRGIIDAYFEENGEIVLLDYKTDFVNEENREEVVDRYRKQLEIYAKVIEEI-TDKK 1237 Query: 920 LVCLLIYV 927 + IY+ Sbjct: 1238 VKEQYIYL 1245 >gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149] gi|153796947|gb|EDN79367.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149] Length = 1194 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 151/959 (15%), Positives = 323/959 (33%), Gaps = 101/959 (10%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEK 99 L +T+++A + + + ++ L+ K P+K + + +K+ + + Sbjct: 251 EADLMMIETMEKAETFEAFYGKINQIAWKRLSAKKDETIDPEKKEAVKMLREKAKKMVKD 310 Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159 L+++ + + + L + E K+ V+DF+D+ + Sbjct: 311 LQETCFYETPEELAEDLRNTGSTMEELVFLVTTFARLFAEKKRSRNVIDFQDMEQFALQI 370 Query: 160 LKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 L + V + + + ++ ++IDE QD++LIQ ++ Sbjct: 371 LTEEKDGSLVPSAVAREYQEQFEEVMIDEYQDSNLIQEAIL-------TSVSTVSRGSYN 423 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 +F VGD KQSIY F + P+ + + + + I+L +FRS ++L + Sbjct: 424 VFMVGDVKQSIYRFRLSRPELFMEKYDTYSQA----DSEKQRIDLDRNFRSRKEVLDATN 479 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 VF + S + + + G + + Q+ N + + Sbjct: 480 YVFEQIMH------KSVGGVEYDARAALYPGAD--YPKSREQNGVSANRAELLLVDAQEL 531 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLT 393 ++++ + AR +A I ++ + + R +Q KDI++L R K + Sbjct: 532 EEEDNARRLEARAVADRIKLLLLQGQVVDKKTKEYRPVQYKDIVILTRSIKGWA---DVF 588 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 + + IS R + + L+ + + ++ DL +L SP ++ Sbjct: 589 AQVLAEEGISAHVGSREGYFETYEVSVLLDYLQILDNERQDLPLAAVLTSPFAGLDAREL 648 Query: 454 FKICTQRHE-------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 KI + E + ++ K ++ + + E + + + HD Sbjct: 649 AKIRSTYPELFFYEAVHAYASDDEKEKEPILQQKLKNFLCRVSEFRDMLPYTAMHDLLWE 708 Query: 507 ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPT 560 I+ G + + + + E SY L + +EQ Sbjct: 709 IIEKTGYGMCISAMPGGAQRMANVQMLVAKAAAYEGTSYKGLFNFVRYIEQLKKYNVDYG 768 Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 + VRIM++H +KGLE P+V + G + + I P L + Sbjct: 769 EANLADEQADTVRIMSIHKSKGLEFPIVIVAGMGKLFNTQDVKGSIVIHPELGVGMDVID 828 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS---- 676 ++K+ + + K + E R+LYV MTRA ++LI+ + K Sbjct: 829 LKKRTKAPTLLKKVIQKQVAVENLGEEMRVLYVAMTRAKEKLILTGVCKDARTKLETLST 888 Query: 677 ------------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + ++ D + + E I + +S+ + + L Sbjct: 889 REKTAFLPYEVLSANSYLDWLLPAASPAESSIGITVVDSLGAAQMEGAWEAADELTRNVL 948 Query: 725 E------------REETIKQLMDEQKIPK-----------KLFSPIKNDINEPYILNPST 761 E REE +QL + +L + +L Sbjct: 949 ENWDTNQIHDAGYREELKRQLDFAYPFAEEQRFQMKFTVSELKKRAYMEEEAGEVLYQEP 1008 Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 RG HK L+++ E+ R++ + + E Sbjct: 1009 EAVPLVPRFLGAEEAASGAVRGTAYHKFLELLDFEKEYTRESLEEHLKHLQTEGRISPEI 1068 Query: 822 KNLL--LSITRLLENPMMTTAMSC----DSYSEVSVSGKINCPK--------KDIIISGR 867 + + L+ Y E ++ + +++ G Sbjct: 1069 AEAVKTEDFLKFLQCESGKRMHQAAKKKQLYKEQPFVLGVDSGEIYPDTECRAQLLVQGI 1128 Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 ID + + + +YKT + + + + +QL+ Y + L K++ +IY Sbjct: 1129 IDVYFEEEDGLVVLDYKTDRV--RTADELVRRYQSQLTYYARALSQI-TGKAVKEKIIY 1184 >gi|58698437|ref|ZP_00373347.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila ananassae] gi|58535060|gb|EAL59149.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila ananassae] Length = 893 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 215/743 (28%), Positives = 362/743 (48%), Gaps = 56/743 (7%) Query: 63 EERFSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 + + L+ FL + +K+I T+ I +K D ++ ++ Q+ N+Y++ Sbjct: 204 DTKIENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQI 263 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 FK T + L + K Y K KN +LD+ D+I +LL D W+ + +DQ+I+H Sbjct: 264 FKRTSSLLGVFKVYVDLYNSEKSKNALLDYNDIIDLATNLLSDPDHKDWVLFNLDQKIDH 323 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 IL+DE QD S+ QW++I +L ++FF G + RTLF VGD KQSIY F GA P Sbjct: 324 ILVDEAQDNSISQWKIITNLCDEFFAG---NDEKRTLFVVGDVKQSIYRFQGANPHLFNY 380 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 ++ + G+ + +L SFRST ++L +VD++F+ + + I+H Sbjct: 381 MQQYFHTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFNDNEIKHVP 435 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 R G +++W + + + + Q T + +LA+ IA I N + Sbjct: 436 HRENDQGYIEIWPALPRRKEKEQRALQIPLTC---KEGYTIADRLLAQTIANRIHNWLNE 492 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 I K R I+ +DI++LVR ++ + VVG D F + D++A++ Sbjct: 493 GRIL-VAKDRHIEPRDIMILVR---QRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQ 548 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DL+AL F+L Q +DL+ LKSPLFNF+EDD+F I R E +++E IQ ++ S Sbjct: 549 DLIALAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEH-SLWERIQDYSVVIYS 607 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 + ++ LI++++ SP FT IL G+++F +R G E +VLDEF+N L+ Sbjct: 608 E-------LNYLINLSRTESPLALFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQF 658 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E SLQ + +++ P IK + N VRIMT+H +KGL++P+VFLVDT + + Sbjct: 659 EN---PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRN 715 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + I + D P W ++ N + + K EY RLLYV +TRA Sbjct: 716 SESI--------IFDGTEAPFWCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAE 765 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 D+L I ++ + +WYD++ + + + KK + I K++ + ++P Sbjct: 766 DELYILS------KEPVQKGSWYDLI--TKYGEPYEKKQRGLRPIFKEKVEVLCVNANYP 817 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 + + + S ++ L S + + + + Sbjct: 818 YIYKKRDYFDVPVISLPPALAHSSVS------SQRVTLESSEKEGAEWIPVSATWMTDGY 871 Query: 780 FNRGLIIHKLLQVIFTLPEHKRK 802 RGLIIH +LQ + + + +RK Sbjct: 872 A-RGLIIHSILQYMPKIEKERRK 893 >gi|308181395|ref|YP_003925523.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046886|gb|ADN99429.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1249 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 158/1007 (15%), Positives = 305/1007 (30%), Gaps = 136/1007 (13%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFL-----TQKFTPQKNIITQEINKKSPDLKE 98 T K TL++ T E + +++F + T K P+K + + K +K+ Sbjct: 263 ATAQKTLTTLREQLATASWNELRTQVATFKIGALKKTYKDEPEKTARAKTMGKFVDGVKK 322 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 ++ + + ++ M + + K + K++ VLDF DL Sbjct: 323 QMITLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHL 382 Query: 156 TNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 T +L + ++ + +++DE QD + +Q +++ L P Sbjct: 383 TLQILTSDNESGQAALAQLRAQFEEVMVDEYQDINSLQESILQLLA---------RDQPG 433 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 +F VGD KQSIY F A+P L + + I L +FRS A++ + Sbjct: 434 NMFMVGDVKQSIYQFRLADPLLFLHKCHDF----GMNPEHGERIVLAENFRSVANVDHLT 489 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + +FS +A D + + ++ + + E ++ Sbjct: 490 NLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQT-ETDKSTEDVSTDET 548 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + A +A I + D G+ R + D+ +LV R I Sbjct: 549 NFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALLVPTRNHNLTIID 608 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + + Y I VV ND I+ +M+L I + D+ V +L+SP+ E+ Sbjct: 609 VFK----RYHIPVVVNDAQNYFQTTEIRIMMSLLSIIDNPYQDIPLVAVLRSPIVGLDEN 664 Query: 452 DIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIAQFCSP 500 + + Q ++ ++ + +K + + + E +A+ Sbjct: 665 QLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQLTEFRDLARRNQI 724 Query: 501 HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 I G + L EQ S+ L + + + + Sbjct: 725 VTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGLFQFVRFIRRMQE 784 Query: 560 TIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + + V +MT+H +KGLE PV+F++D Q + Sbjct: 785 KDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTRSSALLDREAGIG 844 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 + K + + K + E R LYV MTRA QL + + Sbjct: 845 ITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQQLYLVGTIKDIDTAT 904 Query: 676 SNQ---------------------------------RTWYDMVYDSFHNDERVKKIKLTN 702 D + N E Sbjct: 905 EKWRQAFASDGRVLSAQARIAATNQLDWVGMAVIRHPAMKAYWGDEWPNYELTDDPTKLA 964 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQL---------MDEQKIPKKLFSPIKNDINE 753 D + T + E ++Q D P + Sbjct: 965 VELGDATTVLAEQSEAVSGTQPDALELVEQQVTIDVDQVTRDYLTTLLNFHYPHQASTTT 1024 Query: 754 PYILNPSTIDTKGKTN-------------------------------LESLLSDNQTFNR 782 + S + + + Sbjct: 1025 TAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSLELPQFLQTTQAPTSAEV 1084 Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTT 839 G H +L+ + L + + + S N L + +I ++ + + Sbjct: 1085 GSATHLVLEQL-DLTKPVNETTVQSTIDGLVANRVLTTNVAKLIAVDTIVAFYQSALGSQ 1143 Query: 840 AMS--CDSYSEVSVSGKINCPK---------KDIIISGRIDQISISQQNIFIFEYKTHHH 888 + + EV S I + ++I G ID + + +F+YKT H Sbjct: 1144 ILDNPAKVHREVPFSLLIPARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV 1203 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + E + + Q+ +Y L YP K L + + + Sbjct: 1204 --KRPEDLKTRYAGQVKLYAAALASMYPGKVTKQYLYSLPQQVFVPV 1248 >gi|187935208|ref|YP_001884280.1| recombination helicase AddA [Clostridium botulinum B str. Eklund 17B] gi|251764511|sp|B2THC8|ADDA_CLOBB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|187723361|gb|ACD24582.1| ATP-dependent nuclease subunit A [Clostridium botulinum B str. Eklund 17B] Length = 1243 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 151/953 (15%), Positives = 297/953 (31%), Gaps = 136/953 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 ++I + L + + N K + L + KK+ + Sbjct: 303 KQIRDQVKKKISALIEGTFIASPDKMLDNIIKSYPYINQLTELTSEFIDRFTAKKKEKNI 362 Query: 147 LDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 LDF DL +L + + V + I K +L+DE QD++ +Q +I ++ Sbjct: 363 LDFNDLEHLCLKILIEENEENQIVPSTIAQKFKDYFEEVLVDEYQDSNNVQEAIIELVSR 422 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 +S +F VGD KQSIY F A+P+ + + I+L Sbjct: 423 K-------NSDNPNVFMVGDVKQSIYKFRQAKPELFIDKYNSYSLD----KGINRKIQLY 471 Query: 262 LSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWE 312 +FRS +I+ V+ +F + L + ++ + G +++ Sbjct: 472 KNFRSREEIINGVNYIFKSVMSKTVGELEYTDVEALNLGANYPEKKNDDDIIGGPIEVHI 531 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-------IFSN 365 S + + + + + + ++ AR I I+ +I Sbjct: 532 LDRSDNKEENDEFK------LQAEEEIGDVNLEARIIVKRINELISKKEGNKFKVLDKDT 585 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 G+ R ++ KDI++L+R K+ + I V + + + I+ +M+L Sbjct: 586 GEYRDLKYKDIVILLRATKNWS---EVLLDELGLAGIPVYADTGSGYFESIEIRTIMSLL 642 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-----YIQKFANCGISK 480 + I + D+ + +L SP+ S +++ I E + + K Sbjct: 643 KVIDNPMQDVPMLSLLISPIIGLSAEELSDIRLIDKEKYFYENIIKISKEKLISVELQEK 702 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN 539 ++++ I + + + +F + G L + Sbjct: 703 CEYILSSIDKWRRKSIYMPIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRARQF 762 Query: 540 EQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 S+ L I+ + + N + +RIM++H +KGLE PVVFL G Sbjct: 763 SDTSFKGLFNFINFINKLTKSSGDMGSAKILGENEDVIRIMSIHKSKGLEFPVVFLAGCG 822 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 K+ L P ++ + K +K T E R+LYV Sbjct: 823 KNFNLMDLNNKILYHEELGLGPEYINLENRTSITTLPKEAIKKRMKLETLSEEMRVLYVA 882 Query: 655 MTRASDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDS------- 688 TRA ++LII + + +++ D + + Sbjct: 883 FTRAKEKLIITGAVRNAEKSIEKWINSAVLDKDVVLPYEISKGKSYLDWIGMALCKHKDG 942 Query: 689 -------------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI-KQLM 734 +D + KI + N D + + + + ++ + K++ Sbjct: 943 EILRKKLGFSSEMCKDDLSMWKISIWNKYELDMYDELDENQEEEDVKISILDKDVNKEIK 1002 Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------------------------TNL 770 E K ++ S + + Sbjct: 1003 SEVYRRLGYEYEFKESTKLTSNISVSDLKKRNIEDDIDTLKMFDLEEEDNKNKDIITPKF 1062 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 RG IH ++ I K + +E N + I Sbjct: 1063 LQEEKGISAAERGTAIHFAMKKIDFSKVGTLKEIKEQLNKLYDEELILQEEYNSINPYKI 1122 Query: 829 TRLLENPMMTTAM-----SCDSYSEVSVSGKIN-----------CPKKDIIISGRIDQIS 872 ++ + + Y EV +I+ + I + G ID Sbjct: 1123 LSFFKSSLGKKMLYVYNEGGKVYREVPFYTEISSLEIDESLPQKYANEKIRLQGIIDCFF 1182 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 I + +YKT + + E + QLS Y + + K L Sbjct: 1183 KCDDEIILLDYKTDYV--ENEEEFKDKYKNQLSYYSEAIFKMTGKKVDKKYLY 1233 >gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799] gi|150272678|gb|EDM99856.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799] Length = 1206 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 159/1025 (15%), Positives = 326/1025 (31%), Gaps = 121/1025 (11%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSME----------TGNPTILKKAQTLQQAS 57 E+ K L Q ++ ++E PTI LQ Sbjct: 206 DAGETP--WGKLLLEDAAAQARYWLSRMAGALEDCACDPNLDANYAPTISATIAGLQAFL 263 Query: 58 QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT- 116 + + +K E ++ ++ + KK ++ + + Sbjct: 264 DGAAQGWDAAAAALPISFPPAGRKKMTECPEAAERVKSVRNRCKKRLEKLAEGFSDDSAG 323 Query: 117 -----YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIR 170 ++ + L K A Y K++ VLDF DL LL + + Sbjct: 324 LLSDMAAVYPAVRGLFALVKDFEAAYAAEKERRGVLDFSDLEHMAVRLLVGEDGSPTPLA 383 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + + I++DE QDT+ +Q + ++++D R LF VGD KQSIY F Sbjct: 384 KQWSGRYDEIMVDEYQDTNAVQNAIFSAISQD----------GRNLFMVGDVKQSIYRFR 433 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288 A+P L + R T + I L +FRS A +L + +F + + Sbjct: 434 LADPTIFLEKYRTFTPYETAEEGEPRRIILSKNFRSRAQVLEGANFIFRGIMSRSFGEMD 493 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 + + +S + + + + + D L AR Sbjct: 494 YTADEALYPGASYPEGADYAVELDALDLAAGGGDDEDESGEKTPRDLLE--------ARF 545 Query: 349 IAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + S+G+ R D+++LVR ++ R L I Sbjct: 546 LAKRIKELKDGGFPVSDGEGGTRPAGYGDMVILVRSPN--SVLHHYARALGER-DIPWEA 602 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 + + + ++L + + + D+ + +L+SP++ F+ D + + +T+ Sbjct: 603 DAGGDYFETTEVSVALSLLQIVDNPRQDVPLISVLRSPVYGFTADRLAVLRAASPDTD-F 661 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEV 525 Y + K A G + + +L + + H I F G + Sbjct: 662 YAALVKGAEEGGVDCAAFLAELEDLRFRSGDRNSHQLLWQIYDRTNLLGIFGAMDEGEKR 721 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTAK 581 L + E + L ++ L + + VRI+++H +K Sbjct: 722 QGNLLALCELARQFEAAGHKGLFGFLTYLTRLRDNGGKLAAPQAAREGGGVRILSIHKSK 781 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE P+V L ++ + + P L P + + + L+ Sbjct: 782 GLEFPIVLLSGLTRRLNRDDMQRPILFHPQLGVGPKRLDTERMIEYPTLARRAVARQLEY 841 Query: 642 STQEEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 E RLLYV MTRA ++LI+ ++ +K + Y + V + Sbjct: 842 EMMAEELRLLYVAMTRAKEKLILSCALTRGAADLRKLAEDAEYPADPQVLSGCQSVGQWV 901 Query: 700 LTNSINKDEWIAYEWSTHHPEN----------------------TPLEREETIKQLMDEQ 737 L + + + +A + +P P + + + ++++ Sbjct: 902 LLPVLTRPDAVAIRRAADYPLPIAAAELGPDWDIRWVDGSDLLQPPERKTAVLSENVEDK 961 Query: 738 KIPK-----KLFSPIKNDINEPYILNPSTI------------------------------ 762 + P D+ P L + + Sbjct: 962 PVGDLTGVLTWKYPYAGDVEIPSKLTATQLKGRELDQEAGAEFPLPQGEPEEPAAVPAGK 1021 Query: 763 -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 T + +G +H ++Q I + A + E Sbjct: 1022 RSTLRRPRFAEEEFGLTPAQKGTALHLVMQYIDFERAGTEEQVKEEIARLVAGAYITPEQ 1081 Query: 822 KNLL--LSITRLLENPMMTTAMSC-DSYSEVSVSGKINC--------PKKDIIISGRIDQ 870 + I ++P+ M E S + + +++ G +D Sbjct: 1082 GEAVNPAKIAAFFQSPLGREMMESVSLRREFKFSILVPAADYCPGAGEGEQVLLQGVVDC 1141 Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 + + I + ++KT + I+ + QL+ Y + L++ + + L + + Sbjct: 1142 CFETLEGITVVDFKTDRVTRRTIQERAEEYRPQLTAYSRALEEMTGRRVVRRALWFFALD 1201 Query: 931 KVFII 935 + + Sbjct: 1202 QAVEV 1206 >gi|169826779|ref|YP_001696937.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41] gi|251764534|sp|B1HN90|ADDA_LYSSC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|168991267|gb|ACA38807.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41] Length = 1238 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 150/1016 (14%), Positives = 319/1016 (31%), Gaps = 112/1016 (11%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74 + + + + + Q + SQ +E F ++ Sbjct: 236 SLEEAFVLISEMRAITLQPDGPAPYAETAEIDFAMIQEGIRISQEGTWQELFDYFATVKW 295 Query: 75 -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-------AS 126 T K + ++ E+ + + +E KK ++ + ++ + Sbjct: 296 STLKRVSKDALVDVELQELAKKKREAAKKIMNKMKETYFIRTPARLLEEIRLMAPIIGTL 355 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK----KRDVSAWIRYKIDQEINHILI 182 + L + + AK + ++DF DL +L + + + + +L+ Sbjct: 356 VELTTIFSEQFRLAKLERGIIDFSDLEHYALQILTVEVDGELQPSPVALDLKKRFKEVLV 415 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+++Q +++ + K+ LF VGD KQSIY F AEPK R Sbjct: 416 DEYQDTNMLQETILQLV-------KSGEEQDGNLFMVGDVKQSIYRFRLAEPKL---FMR 465 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSS 300 + I+L +FRS ++L V + +F+ + + D +++ + Sbjct: 466 KYSEFLETPDATGMRIDLNANFRSRKEVLNVTNYIFAQIMGERVGEILYDDNASLKPAAP 525 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + V+L D + +QE T L + + AR I I M+ Sbjct: 526 YDEKEVPVELVVMHPP-QDEETVDEQEDKTDEASELEELKKSQYEARFIIDRIRQMMEDG 584 Query: 361 TIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 T + K +R ++ DI++L+R + I + D L Sbjct: 585 TTVYDTKSMTERPLKYSDIVILMRSMTWSTD----LVEEFKLAGIPLYAESSKGYFDALE 640 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYI 470 + ++ + + + + D+ +L++P +E+++ KI + + + Sbjct: 641 VMIILNVLKVVDNPYQDIPLASVLRAPFVGLTENELAKIRLADSKVPFYDALRQFIRSEG 700 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529 Q K Q + +A+ S D I + G + L Sbjct: 701 QGVQTTTFEKLQRFMLAFENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANL 760 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + L EQ ++ L + +++ ++ + VR++T+H++KGLE Sbjct: 761 RILHDRALMYEQTAFRGLFRFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGLE 820 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVF+ G + + L + + + Sbjct: 821 YPVVFVAGMGRPFNKMDFHHPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEMR 880 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEK--------------------KSNQRTWYDM 684 E R+LYV MTRA ++LI+ + ++ ++ D Sbjct: 881 AEEMRVLYVAMTRAKERLILVGSVKNWEKTRDNWQDAQNIPSDAPLQEYLRARANSYLDW 940 Query: 685 VYDSFHNDERVK----------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 + + I + Y + + + T + Sbjct: 941 IGPAVARHGDFASQATTSYKELDSPSHWWIQPIDTRHYSYDIQAFNDEIQQHLTTQEDEA 1000 Query: 735 DEQKIPKKLFSPI------------------------KNDINEPYILNPSTIDTKGKTNL 770 +I + + + + E Y P+ + Sbjct: 1001 LLSEIKARFHAQYTYQKSTRKRSKTSVSEIKRLENLQRQEEPEYYFATPAKRTSTSIAPR 1060 Query: 771 ESLLSDN--QTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPAKEYKNLLL 826 + L D G +H ++Q I + + L A+ + Sbjct: 1061 PTFLQDQQLTGTEIGTAVHTVMQHIPQFGFDTIEAVKGFVANLVAKQLLTEAEGKVVPIK 1120 Query: 827 SITRLLENPMMTTA-MSCDSYSEVSVSG-KINCPKKDIIISGRIDQISISQ-QNIFIFEY 883 + + + E+ + +++ I+ G ID + + N + +Y Sbjct: 1121 KVYHFFHTEIGQRFKQARQIRREMPFTISRVDEDGDAQIVQGIIDCLFEDEYGNWVLLDY 1180 Query: 884 KTHHH------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 KT P + I + QL +Y + ++ K +L + Sbjct: 1181 KTDRILPHFAKEPALTKEIMGRYAVQLRVYSEAIESILQIKVSEKVLYLFDNEQTV 1236 >gi|197302903|ref|ZP_03167954.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC 29176] gi|197297984|gb|EDY32533.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC 29176] Length = 1256 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 157/1076 (14%), Positives = 316/1076 (29%), Gaps = 183/1076 (17%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 +R L + + + + + + + + P A+ L+ + Sbjct: 202 DREHLEDSRMVHTVEERVRQQLGDLYGLVRQAMEICQLPAGP--YMYAEALESDEKELKK 259 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN------- 115 ER K + ++ +L++ ++ + + + D Sbjct: 260 LERADSYEKMSEVLMDFNWKKLSGKKDETVDAELRKSVQAVRKQLKALIDGIQKSYFYAT 319 Query: 116 -------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD---- 164 ++ L + ++E K++ ++DF D+ +L + Sbjct: 320 ADEWVADMQDSAQAMRTLTGLVQEFADRFDEKKRRRNMIDFSDMEQFALAILTRNTEGKI 379 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 V + + + + +++DE QD++L+Q ++ +F VGD KQ Sbjct: 380 VPSAVAEEYQERFAEVMVDEYQDSNLVQETIL-------TSVSGMSKGRNNMFMVGDVKQ 432 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY F + P+ + + I+L +FRS ++L + +F Sbjct: 433 SIYRFRLSRPELFMEKYDTYSVE----SSPCQRIDLHKNFRSRKEVLDSTNYLFEKLMFR 488 Query: 285 --QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G+ D + + D+ + E + + Sbjct: 489 EFGGIEYDENAALYAGAEFPPIP------------EDAVFTDKTEVLIFNQQDMKARDAK 536 Query: 343 SILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR IA I M+G+ I+ G R IQ KDI++L R + + Sbjct: 537 EAEARMIARRIREMMGSGYIYDKGSDSFRKIQYKDIVILTRS---IQGWAESFSAVLAEE 593 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I R + I L+ R + + DL +L SP +++ +I Sbjct: 594 GIPAYSVSREGYFETYEISVLLDYLRILDNARQDLPLTAVLTSPFVGLDAEELAQIRLAY 653 Query: 461 HETETVYEYIQ-------------------------------------KFANCGISKFQH 483 + + K Sbjct: 654 PNLPFYESVWLCGEEKTEETGADGSGETGEKEKKEKKKSDAEAENRSGEISEAVREKLAE 713 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQN 542 + + I + HD IL R + G + I ++ + E Sbjct: 714 FTRQVRYFRSILSYTPIHDLLAKILEETGYRTFIAAMPGGEQRIANVEMLIEKACAFEGT 773 Query: 543 SYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 SY L + +EQ + VR+M++H +KGLE P+VF+ G Sbjct: 774 SYKGLFNFVRYIEQLKKYNVDYGEAGIMDEQADTVRLMSIHKSKGLEFPIVFVAGMGKSF 833 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + I P ++K+ + + + K E R+LYVGMTR Sbjct: 834 NMQDQRGSIVIHPDWGIGIDAVDLEQRTKNPTFLKRMIQEKTKLENLSEELRVLYVGMTR 893 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW--- 714 A +++I+ + E+ D++ + K + ++ + E + Sbjct: 894 AKEKMILTGTAKLGEEELLALEMMEDIIKREEKQNSWKADEKDSLALYQMEGAKTCFDWI 953 Query: 715 ----------------------------STHHPENTPLEREETIKQLMDEQKIPKK---- 742 + + L RE ++ +P+ Sbjct: 954 LPALMRDWKKAEKWIQVRLVTREELSYGAATAGQAEVLAREVLEHWDTEKSYMPEWKELL 1013 Query: 743 -----LFSPIKNDINEPYILNPSTID----------TKGKTNLESLLSDN---------- 777 P + S + + E L + Sbjct: 1014 SEQMNYTYPYLQEEQMKLKFTVSELKKRIYAGEQMREMQEDGGEELYQEPEIVPLVPGFM 1073 Query: 778 -------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 +RG HKL++++ ++ + K E + I Sbjct: 1074 QDQKEGLTGASRGTAYHKLMELLDFTRQYTEAALKNAVHDFEKKKKMTLEMAACIRISDI 1133 Query: 829 TRLLENPMMTTAMSC----DSYSEVSVSGKINC--------------PKKDIIISGRIDQ 870 LE+ + + E ++ K+ I++ G ID Sbjct: 1134 LLFLESSSGKRMSAAAGKGKLWREQPFVLGVDADQVYPGFSGEPGSQEKEVILVQGIIDA 1193 Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + I + +YKT + E + + AQL Y + L+ K + +IY Sbjct: 1194 YFEEEDGIVVLDYKTDKV--KSAEQLKERYHAQLEYYAQALEGLL-EKPVKEKIIY 1246 >gi|225174781|ref|ZP_03728779.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1] gi|225169908|gb|EEG78704.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1] Length = 1229 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 165/1040 (15%), Positives = 325/1040 (31%), Gaps = 131/1040 (12%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP---------------TILKKAQTLQQ 55 E+ E + K L PL + S G L++ + L+ Sbjct: 205 ETEEGLEKWLPPLKEHLGLSLAHAKSSLQRAGKLCNRPGGPLAYENRLLEDLEQVENLES 264 Query: 56 ASQTQCIEERFSLLSSFFLT-----QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 + + + Q + KK+ + K+ K+ E Sbjct: 265 LV-AGSWDALREAWQGLDFKRLPAVKDCDEELKEQVQALRKKAKEALSKIGKTFFERSAA 323 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA--- 167 ++ +L Y +AKK +LDF DL + +L D Sbjct: 324 DYLREIGELAPLIEVLTSLVARFAGEYGQAKKMYGLLDFNDLEHHCLQILMAEDAPPGEI 383 Query: 168 ---WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 ++ H+L+DE QD + +Q ++ ++ + LF VGD KQ Sbjct: 384 IPSEAAREVRARYEHVLVDEYQDINPVQDAILTLVSRQG-------ETTPNLFMVGDVKQ 436 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE-- 282 SIY F +P L R G+K + L +FR ++T V+ +F Sbjct: 437 SIYRFRLGDPGLFLERYRRYPA---EKGKKERKLLLSKNFRCRHGVVTAVNYLFRQLMTT 493 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 A L D + + ++ V + D + Sbjct: 494 QAAELEYDREAELVCGAHYPEPSQECKISGLVDVHLLEREQDGDHD-RQGDDEGEDLDAL 552 Query: 343 SILARRIAYTISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 A IA I ++ R + +DI++L+R ++ + Sbjct: 553 EREATVIAGQILVLLNGPDGARYVFDKEEKAYRPVTYRDIVILLRATSNSAN---RLVEI 609 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 + I + ++ +++L + + + D+ +L+SPL + +D+ + Sbjct: 610 LARHGIPAYADLSSGYFAATEVETMLSLLQVVDNPRQDIPLAAVLRSPLVGLTVEDLAAV 669 Query: 457 CTQRHETETVYEYIQKFANCGI----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 + ++ + + K + + +A+ + F T + Sbjct: 670 RQAGERNDDFFDAVLAASQQQFPGLSEKLTDFLTTLERWRTLARRETLATFITAVYRESG 729 Query: 513 GRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHS 566 G + L + + ++ + L +S +EQ RA Sbjct: 730 YSDYVAGLPDGAQRQANLRALFSRARQFDRFARQGLFRFLSFIEQLRRSGEDLGTARALG 789 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 N VRIM++H +KGLE PVV L D G +M + L P I + + Sbjct: 790 EKENVVRIMSIHKSKGLEFPVVILGDLGKTFNFQDQRSEMLVHRRLGLGPLIVEPEKKLR 849 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE------------- 673 + L + T+ E R+LYV +TRA +QLI+ + ++ Sbjct: 850 YPSLPYLALKIMGEAETRAEEMRVLYVALTRAREQLILVGSARGLDKHLESWRQLLAHCG 909 Query: 674 ------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE---WSTHHPENTPL 724 + + RT+ D + + V+ T + E + W + Sbjct: 910 EQLPASELTRARTYLDWLGRALIRHGDVEGRTETYTWQAGEESRFRLTVWDRESLSEIAV 969 Query: 725 ERE-------------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID-- 763 +RE +T L +E + P ++ P L+ S + Sbjct: 970 KREGEEEYTKRDAILSLRRVKVDTADDLREEIRTRLAYKYPYAR-LDLPAKLSVSELKRR 1028 Query: 764 -----------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFI 805 + + + RG++ H++LQ + +L +R Sbjct: 1029 FSELEEEEGEKKAFTPTSWSRPAFIQQKAGLSPAERGILYHQVLQHLDLSLSLDERGIEG 1088 Query: 806 TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTA--MSCDSYSEVSVSGKINC----- 857 + + A + + L I + + Y E + + Sbjct: 1089 QIHYLQKAGVLAEEATDYLDPGLIAAFFTSEAGRVVQKYRSEVYREWPFTLSLPAAEIAT 1148 Query: 858 --PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915 + +II G ID + + Q + +YKT + + + QL Y + ++ Sbjct: 1149 GNGDESLIIQGIIDLLVRTPQGFVVIDYKTDRLPGGGLNELAKRYEEQLRYYARAVETIL 1208 Query: 916 PNKSLVCLLIYVSEPKVFII 935 L + + + Sbjct: 1209 SVPVCGAYLYAFAAGESVRV 1228 >gi|311029443|ref|ZP_07707533.1| ATP-dependent nuclease, subunit A [Bacillus sp. m3-13] Length = 1255 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 148/1059 (13%), Positives = 341/1059 (32%), Gaps = 143/1059 (13%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQA 56 F + + +++ S + K + +++E G P L + LQ A Sbjct: 213 FSIDELPFISTLKREMKLQFLGAESLLEKAMKITLEPGGPAPRADNIEQDLAQLHRLQAA 272 Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN- 115 + + ++ ++ T + + +E+ ++ ++ K Sbjct: 273 L-NTSWGDLYEVMQELDFSRAKTCRGDEYEKELIERWTKVRNDAKAMVQGIKDELFSRRP 331 Query: 116 ------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV---- 165 ++ + L K + K+ ++DF DL ++L + Sbjct: 332 ESFLKDLEELAPVMGTLVDLVKRYGVEFSLMKQDKGLVDFPDLEHLCLNVLTTFNEGKVE 391 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + + +++DE QDT+++Q +++ +T++ +F VGD KQS Sbjct: 392 RSEAALRYQSTFKEVMVDEYQDTNMVQEAILKLVTKES-------EESGKMFMVGDVKQS 444 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284 IY F AEP L + + A +G I+L +FRS ++L + +F Sbjct: 445 IYRFRLAEPFLFLSKYKRFDTDAKESGL---RIDLNKNFRSRPEVLDATNFIFKQIMGET 501 Query: 285 -QGLSEDSTTTIRHRSSR----IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 + D ++ ++ + + L + S + + + Sbjct: 502 VGEIDYDDDAELKFGAAYYPEAADRESELLLLNRSSSVAGEDEELSESEDNTTGFDKVEL 561 Query: 340 SSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFL 396 +A + A+ IA I +I + + R + +D ++L+R P + Sbjct: 562 ETAQVEAKMIAQKIKQLIQSGYEIFDKDRKVMRPVTNRDFVILMRSMPWAPQFMEEFKQE 621 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 + + N + + L++L + I + D+ +L+SP+ +D+ I Sbjct: 622 ----GLPLYANLSTGYFEATEVAILLSLLKIIDNPYQDVPLASVLRSPIVGLDSNDLATI 677 Query: 457 CTQRHETETVYEYIQKFANCGISKFQH---------VIKYIHELIHIAQFCSPHDFFTLI 507 Q+ + YE + F + + + A+ + + I Sbjct: 678 RIQQKRG-SYYEALMAFMEKAPDSLEEQELAKRVRLFYQMLQSWRTAAREGALSELIWQI 736 Query: 508 LGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561 G + L + + E S+ L + +E+ Sbjct: 737 YQDTHFFDFVGGMPGGKQRQANLRALYDRARQYESTSFRGLFRFLRFIERMQERGEDLGA 796 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 RA + VR+MT+H++KGLE PVVF+ Q + L Sbjct: 797 ARALGEQEDVVRLMTIHSSKGLEFPVVFVAGLSRQFNMMDLNNSYLLDKELGFGSKYVNA 856 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------- 674 + + L + K E R+LYV +TRA ++L + + Sbjct: 857 KLRITYPTILQLALKRKAKAQLIAEEMRVLYVALTRAKEKLYLVGTVKDFEKSQLLWSEH 916 Query: 675 ------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINK---------------- 706 ++ +++ D V + + + ++ + Sbjct: 917 VSHENWLLPDYVRAGAKSYMDWVGPALVRHKDAEVLRGDSLAGTKQEDIANHPTSWKISV 976 Query: 707 ---DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------LFSPIKNDINEPYIL 757 ++ + + EN LE+ + +Q+ E + P K Sbjct: 977 TNVEQLLQGIEAEKEAENLLLEKVKRGEQVDIESPYKARVAEQLTWSYPYKEASIHRSKQ 1036 Query: 758 NPSTIDTKGK--------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 + S I + G +H ++Q + Sbjct: 1037 SVSEIKRMREQQDPYADNTLVQTERRYFLDRPAFLQKKKLSPSEIGTAMHAVMQNLDLSA 1096 Query: 798 EHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYSEVSVSG 853 ++++ S + +L A++ + +I P+ + + EV S Sbjct: 1097 ITIDRDYVQSQVMEMVQKELITAEQANVIDFDAIVSFFTTPVGKRMQQAEHVHREVPFSF 1156 Query: 854 KI---------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIP 897 + + ++ I++ G ID + ++ + + +YKT + + Sbjct: 1157 ALQENEFFEQMDLKEETILVQGVIDCLLEDEEGLVLIDYKTDTITGRFSNGFEEAEPVLR 1216 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + Q+++Y + ++ + + L + + + Sbjct: 1217 NRYKDQVALYARAVEGIWKKELKEKYLYFFDGNHLVKMD 1255 >gi|331092164|ref|ZP_08340994.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA] gi|330401936|gb|EGG81510.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA] Length = 1197 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 146/929 (15%), Positives = 311/929 (33%), Gaps = 107/929 (11%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 + + + + +E K++ DL + K+ + K ++ + L K Sbjct: 288 KSVSEELSAFVKETRKQTKDLLTDIVKTYLFQPIEEMAVDMAKTKETMEELVFLVKEFGC 347 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLI 191 Y EAK+ ++DF D+ +L + + + + + + ++IDE QD++L Sbjct: 348 LYTEAKRSRNLIDFGDMEHLALQILTVEEGDAILPSPVAREYQKRFKEVMIDEYQDSNLT 407 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q ++ +F VGD KQSIY F + P+ + + Sbjct: 408 QEAIL-------TSVSTVGCGKNNIFMVGDVKQSIYRFRLSRPELFMEKFDTY----DIE 456 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 I+L +FRS ++L + +F + D + + + G Sbjct: 457 DSTKQRIDLHKNFRSRREVLDSTNFIFEQIMTKGLGKVEYDDKAALYVGADYKEKEGNET 516 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GK 367 + D + Q +E++ + AR +A I ++ + G+ Sbjct: 517 EVLVIDVDMDGESEEQV-----------EETARELEARAVARRIKELMAQHRVQDKQTGE 565 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R I+ +DI++L R K + + N I + + I+ ++ R Sbjct: 566 FRQIRYRDIVILTRSLKGWT---DVFARILNREGIPTYTGSKEGYFETQEIQTVLNYLRV 622 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI----SKFQH 483 + + D+ V +L S + FS +++ +I T E + ++ + Sbjct: 623 LDNPNQDIPLVSVLTSGMGKFSGEELAEIRTLDKEVPFYRCVRRYIKEGKNTLLANRLEK 682 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKG-RQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 + I + + + H+ ++ + + G + LD L E Sbjct: 683 LFAQIEYFREMIPYTAIHELLWRVIEETGYGYETAVMAGGEQRKANLDMLLEKAKAFEGT 742 Query: 543 SYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 SY L + +EQ + VR+M++H +KGLE P+VF+ + Sbjct: 743 SYKGLFNFVRYMEQLKKYDVDYGEANIADEQADAVRLMSIHKSKGLEFPIVFVSGMNKRF 802 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 ++ L + KS + + + + E R+LYV +TR Sbjct: 803 NKQDITGEIVTHAELGIGLDRVDLEKRMKSPTFLKKTMQREVMLENIGEELRVLYVALTR 862 Query: 658 ASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKI 698 A ++LI+ + +K S +++D V + +++ Sbjct: 863 AKEKLIMTGTLSQVEKKFMSYAVLENREEKQLPFTMLSKAGSYFDWVLPALLRYPEQRRV 922 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM-------DEQKIPKKLFSPIKNDI 751 + IN +E + E E+ + + + P +N Sbjct: 923 GKVSVINLEELVQKEVQEETGAEYTKEKLQNWDTEQIFDSDFKERLEKQFSYRYPYENQN 982 Query: 752 NEPYILNPSTIDTKGKTNLES-------------------LLSDNQTFNRGLIIHKLLQV 792 + S + + ES + RG HK+L++ Sbjct: 983 DLKLKFTVSELKKRKNLAEESGELLIREEEIIPILPKVLTEEEGIKGVLRGTTYHKVLEL 1042 Query: 793 IFTLPEHKRKNFIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS--- 847 + E+ ++ + T+ ++ + + + L + M S Sbjct: 1043 LDFTKEYTYESLKEYLEHLTEEGRISEEMKKCVRIKDLLTFLRT-DIAERMKKCSKCGKL 1101 Query: 848 --EVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897 E + ++ ++I G ID + + + +YKT + + Sbjct: 1102 FKEQPFVLGVPAKEIYPEEKIEETLLIQGIIDVWLEEEDGLVVVDYKTDRV--KNGLELK 1159 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + QL+ Y + L+ K + +IY Sbjct: 1160 AKYSGQLNYYGEALERL-TGKKVKEKIIY 1187 >gi|255655059|ref|ZP_05400468.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-23m63] gi|296451046|ref|ZP_06892788.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08] gi|296880601|ref|ZP_06904563.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07] gi|296260053|gb|EFH06906.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08] gi|296428555|gb|EFH14440.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07] Length = 1275 Score = 380 bits (974), Expect = e-102, Method: Composition-based stats. Identities = 162/1042 (15%), Positives = 344/1042 (33%), Gaps = 165/1042 (15%) Query: 33 KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------ 86 + + E + K + QA + +E + +SS K I Sbjct: 243 EELETFAEKLSAEYKKIVD-ISQAC-NKSWDETYKKMSSMSFENYVKGVKRISKDAPSYI 300 Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEE 139 +E +K+ +++K KKS + + + + + + K Y Sbjct: 301 KESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISNIVLRFEEEYSN 360 Query: 140 AKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 K++ ++DF D+ ++L V + I E I IDE QD++L+Q Sbjct: 361 KKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNEFYEIFIDEYQDSNLVQEV 420 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 +++++ ++ F VGD KQSIY F A+P+ + G Sbjct: 421 LLKAVA---------NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSS 468 Query: 255 FSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------V 305 I L +FRS +++ V+ +F EN + + ++ Sbjct: 469 HRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFEMDTDEKSIIG 528 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWT-----SYFDSLPQESSASILARRIAYTISNM---- 356 G ++ + S + + + + AR + I ++ Sbjct: 529 GATEIHLIQKDNKLDDDIINDKDDRTNNKESEIEEEEKLDNIQLEARMVGKIIKDLMKVN 588 Query: 357 ----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + G R ++ +DI++L+R + + I + Sbjct: 589 EEGKLQKVYDKGIGGYRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGY 645 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----- 467 D + IK +++L + I + D+ + +LKSP+F F+ +D+ I Q + Sbjct: 646 FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705 Query: 468 -------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 E + I+K + + + E + + S +F + Sbjct: 706 AEYNEFKDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSAN 568 + G++ L + E+ S + ++ +E + N Sbjct: 766 AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGEN 825 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N VRIM++H +KGLE PVV G + K + +L P + + Sbjct: 826 ANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFP 885 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQR 679 + L + E R+LYV TRA ++LII ++ + S+ Sbjct: 886 SIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGVENSDTI 945 Query: 680 TWYDMVYDSFHNDERVK------------------KIKLTNSINKDEWIAYEWSTHHPEN 721 + Y+++ D + + +K ++ + E Sbjct: 946 SQYEILKGKNFLDWIMPCVLKHRDLSNLLDEVGLDAVFSVEHNSKWYGKLWDKNDILVEK 1005 Query: 722 TPLEREETIKQLMDEQKIPKK-------------LFSPIKNDINEPYILNPSTIDTKGKT 768 E +E+I++++++ + P + +P ++ + I Sbjct: 1006 KNNEEKESIEKILEKIDVDSPDSDYYNEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNN 1065 Query: 769 ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 E RG I+H +++V+ + + Sbjct: 1066 YEEELINTIFEQKVILKKPLFIQNEEERDKISGAERGTIVHLVMEVLDLKNVSNVNDIKS 1125 Query: 807 SYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINC------ 857 +K ++ +++ I + E+ + ++ + E S+ ++N Sbjct: 1126 QIRGFVSKGIITEKQASIVNPYKIYKFFESNIGKRMLNAELINREKSIYAQVNMKDIYIY 1185 Query: 858 ------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905 ++ +++ G +D I + +YKT + I I + QL Sbjct: 1186 EKLINNDDKKLYDEESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLD 1245 Query: 906 IYEKILKDSYPNKSLVCLLIYV 927 +Y I++ KS+ IY+ Sbjct: 1246 LYADIIETL-TGKSVKEKCIYL 1266 >gi|251778187|ref|ZP_04821107.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082502|gb|EES48392.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1244 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 150/949 (15%), Positives = 299/949 (31%), Gaps = 126/949 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 ++I + L + + N K + L + KK+ + Sbjct: 303 KQIRDQVKKKISALIEGTFIATPDKMLDNIIKSYPYINQLTELTSEFIDRFNAKKKEKNI 362 Query: 147 LDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 LDF DL +L + + V + I K +L+DE QD++ +Q +I ++ Sbjct: 363 LDFNDLEHLCLKILIEDNEENQIVPSTIAQKFKDYFEEVLVDEYQDSNNVQEAIIELVSR 422 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 +S +F VGD KQSIY F A+P+ + + I+L Sbjct: 423 K-------NSENPNVFMVGDVKQSIYKFRQAKPELFIDKYNSYSLD----KGTNRKIQLY 471 Query: 262 LSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQVGTVQLW--EQVVSQ 317 +FRS +++ V+ +F + L + +S + + V Sbjct: 472 KNFRSREEVINGVNYIFKSVMSKTVGELEYTDVEALNLGASYPEKKNADDIIGGPIEVHI 531 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRV 370 D N ++ + + ++ AR I I+++I G+ R Sbjct: 532 LDRSDNKEENDESKLQAEEEEIGDVNLEARIIVKRINDLISKKDGSKFKVLDKDTGEYRD 591 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ KDI++L+R K+ + I V + + + I+ +M+L + I + Sbjct: 592 LKYKDIVILLRATKNWS---EVLLDELGLAGIPVYADTGSGYFESIEIRTIMSLLKVIDN 648 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ-----KFANCGISKFQHVI 485 D+ + +L SP+ S +++ I E I+ + K ++++ Sbjct: 649 PMQDVPMLSLLISPIIGLSAEELTDIRLIDKEKYFYENIIKISTEKLISEELQEKCEYIL 708 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSY 544 I + + + +F + G L + + S+ Sbjct: 709 SSIDKWRRKSIYMPIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRARQFSETSF 768 Query: 545 SSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L I+ + + N + VRIM++H +KGLE PVVFL G Sbjct: 769 KGLFNFINFINKLTKSSGDMGSAKILGENEDVVRIMSIHKSKGLEFPVVFLAGCGKNFNL 828 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K+ L P ++ + K +K T E R+LYV TRA Sbjct: 829 MDLNNKILYHEELGLGPEYINLENRTSITTLPKEAIKKRMKLETLSEEMRVLYVAFTRAK 888 Query: 660 DQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDS------------ 688 ++LII + + +++ D + + Sbjct: 889 EKLIITGAVRNAEKSIEKWINSAVLDKDVVLPYEISKGKSYLDWIGMALCKHKDGKILRK 948 Query: 689 --------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 +D + KI + N D + + + + ++ + + + + Sbjct: 949 KLGFSSEMCKDDLSMWKISIWNKYELDMYDELDENQEELDVKISILDKDVNKKVKSEVYR 1008 Query: 741 K-KLFSPIKNDINEPYILNPSTIDTKGK------------------------TNLESLLS 775 + K ++ S + + Sbjct: 1009 RLGYEYEFKESTKLTSNISVSDLKRRNMDDNIDTLEIFDLEEEDNKNKDVITPKFLQEKK 1068 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLE 833 + RG IH ++ I K + + + I + Sbjct: 1069 GISSAERGTAIHFAMKKIDFSKVGTLKEIKEQLNKLYEEEFILQEEYNSINPYKILSFFK 1128 Query: 834 NPMMTTAM-----SCDSYSEVSVSGKIN-----------CPKKDIIISGRIDQISISQQN 877 + + + Y EV +I+ + I + G ID Sbjct: 1129 SNLGKKMLYVYNEGGKIYREVPFYTEISSLELDESLPQKYANEKIRLQGIIDCFFKCDDE 1188 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 I + +YKT + + E + +QLS Y + + K + +Y Sbjct: 1189 IILLDYKTDYV--ENEEEFKEKYKSQLSYYSEAVFKI-TGKKVNKKYLY 1234 >gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum thermopropionicum SI] gi|251764536|sp|A5D1P3|ADDA_PELTS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|146274096|dbj|BAF59845.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum thermopropionicum SI] Length = 1269 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 153/1044 (14%), Positives = 311/1044 (29%), Gaps = 146/1044 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTI---------LKKAQTLQQASQTQCIEERF 66 + + +D+ + ++ E G P + LQ E + Sbjct: 230 LKQAAEIELAGARADLEAALRIAREPGGPQAYLANLEQEHDLVCRLLQSCRTNAPWAELY 289 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKE----KLKKSQDEFIKIRDRFNTYKMFKS 122 S + +K ++ ++ + +E K+ + + + + + + Sbjct: 290 SYFKEVVFSPLKQCRKEDADLKLAGQARNFRESAKKKVMQVKSRYFSLPPEDLCADLRRM 349 Query: 123 T---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQ 175 L + +A Y +AK V+DF DL +L ++ V + + +++ + Sbjct: 350 APLIKELAGLVREFDATYRKAKAARGVVDFNDLEHYCLQVLAEKGPSGAVPSQVAHELQE 409 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QD + +Q +++ ++ LF VGD KQSIY F AEP Sbjct: 410 KFVEVLVDEYQDINAVQETILQMVSRKG-------EGQSNLFMVGDVKQSIYRFRLAEPG 462 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L++ G + + L +FRS +++ V+ +F ++ S Sbjct: 463 LFLKKYASFSA--GTGGGQGRRLALTANFRSRQGVVSAVNFIFKQIMTPAVGEMAYGSDA 520 Query: 294 TIRHRSSRIGQVG-------TVQLWEQVVS-------QHDSQCNPQQESWTSYFDSLPQE 339 + + + V+L D + + + Sbjct: 521 MLVYGADYPPVPEGQGNYEEAVELHLVERGPAGKDGGGDDPAGEEADGGVEAVEEIEEEL 580 Query: 340 SSASILARRIAYTISNMIGTDTIFSN---------GKKRVIQAKDILVLVRKRKDTPLIT 390 + AR +A I ++G + K R + +D+ VL+R T Sbjct: 581 EAGQKEARLVARRIKELLGGSPGGEHALEIYDRELKKYRPLTYRDVAVLLRA---TAGYA 637 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 I + ++ +++L + I + D+ +L+SP Sbjct: 638 NSFVEEFRREGIPAYAELSTGYFESTEVETVISLLKVIDNPRQDIPLAGVLRSPAVGLKA 697 Query: 451 DDIFKICTQRHETETVYE---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 D+ +I + + +K + E IA+ + D + Sbjct: 698 GDLARIRLASPRGDFYDAVVAASLAGQGELSERLADFLKKLEEWRTIARQGTLADLIWAV 757 Query: 508 LGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTI 561 G + L + + E ++ L + +E+ Sbjct: 758 YRDTGYYDFTGCLPGGGQRQANLRALHDRARQFETTAFRGLFLFLRFIERLREGGRDFGA 817 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 R S N VRIM++H +KGLE PVVF+ G K + L P + Sbjct: 818 ARLLSEKENVVRIMSIHKSKGLEFPVVFVAGLGRNFNFRNLNKAVLFHKDLGLGPQLVDA 877 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-------------- 667 + L LK E R+LYV MTRA ++LI+ Sbjct: 878 EARVTRPTAAKLALKHRLKMEALAEEMRILYVAMTRAQEKLILVGSARNLPGCARRWCGP 937 Query: 668 -----SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 + + T D + + I+ + ++ Sbjct: 938 AGTAGWALPDGFLAGAGTCLDWLMAALARHRDGAAIRELAACAEEPPAEVAADRSRWRVF 997 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEP------YILNPSTID------------- 763 + ++ +E + K+ + P L S Sbjct: 998 FSDSRGRSAEMAEEPVLLAKVRRMEPLEPAGPLAGMIKARLEWSYPAIAVLGRPAKAAVT 1057 Query: 764 --------------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 T G+ G +H ++Q + L Sbjct: 1058 ELKRRFDQLAAGEEQYGEGHFESFRLTAGRPLFMQEKRGLTAAEAGEALHLVMQHL-DLT 1116 Query: 798 EHKRKNFITSYCTK---NAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSG 853 + S L P + I P+ ++ E+ + Sbjct: 1117 GSLDITAVRSQIEDMVWRELLTPEQAAAVPAEKIAAFFAGPLGRRLLAGFQVLRELPFTM 1176 Query: 854 KI----------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903 + P + +++ G ID + + +YKT E + Q Sbjct: 1177 AVQAAEIYPELVPYPGEAVLVQGVIDCLVDEGDGYLLLDYKTGKRPLGRPEEAARRYCGQ 1236 Query: 904 LSIYEKILKDSYPNKSLVCLLIYV 927 L+IY + ++ + + +Y+ Sbjct: 1237 LNIYARAVESIL-GRKVKEKYLYL 1259 >gi|210617937|ref|ZP_03291823.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787] gi|210149076|gb|EEA80085.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787] Length = 1217 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 142/1009 (14%), Positives = 309/1009 (30%), Gaps = 141/1009 (13%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTI----LKKAQTLQQASQTQCIEERFSLLSSFFL 74 D PY + + + + ++ A ++ S + ++ Sbjct: 239 DCEDGPYMYRETLEADLQNIEKINSAEDFLEMSNLISKVKWARLATNRDKSVSEELAAYV 298 Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134 K + + + D E+L + + + L Sbjct: 299 KGVREEVKKTVASVVEQYFFDAPEELYQDM------------LSAKSNMEVLVQLVNDFA 346 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSL 190 + E K ++DF D+ +L + + + + ++IDE QD++L Sbjct: 347 DTFAEKKTGKNMIDFGDMEQFALRILTLEEGGKLVPSKAAKEYQERFAEVMIDEYQDSNL 406 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ ++ +F VGD KQSIY F + P+ + + Sbjct: 407 IQEAIL-------TSVSKVSKGSYNIFMVGDVKQSIYRFRLSRPELFMEKFNTYS----L 455 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTV 308 I+L +FRS ++L + +F G++ D + ++ Q G Sbjct: 456 EESDKQRIDLHKNFRSRREVLDSTNFIFEQVMTKGLGGIAYDDKAALYVGAAYEEQAG-- 513 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--G 366 ++++ + D +E++ + AR +A I ++G + G Sbjct: 514 ---------NETEVILVDTDFEDEDDQKMEETNRELEARAVARRIKELVGHHMVLDKETG 564 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + R + DI++L R K + + N I + + I+ ++ R Sbjct: 565 EYRTARYSDIVILTRSLKGWT---DVFTNILNREGIPAYSGSKEGYFETREIRTILDYLR 621 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFANCGISKFQ 482 + + D+ F +L S + +++ I + T++ + Sbjct: 622 ILDNPRQDIPFAAVLTSCFGKLTSEELANIQCEGEGKTFYERTLFYLENGSDENLKERIT 681 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQ 541 +++ + + H I+ S G + L+ + + E Sbjct: 682 DLLRKYERFRRKVPYTAIHALLWDIIEETGYGDYVASLPSGEQRKANLEMLVEKAVSFES 741 Query: 542 NSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 SY L I +EQ + VR+M++H +KGLE P+VF+ + Sbjct: 742 TSYKGLFHFIRYIEQLHKYDVDYGEASVLDEQADTVRLMSIHKSKGLEFPIVFVSGMSKR 801 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + + I P ++K+ + + + + E R+LYV +T Sbjct: 802 FNTQDIKGSIVIHPEFGVGIDAVDVERRTKAPTLLKRMIQREVLMENAGEELRVLYVALT 861 Query: 657 RASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKK 697 RA ++LI+ + +K + +++D V + + Sbjct: 862 RAKEKLIMTGTISNLEQKIRSYEGLRSHEETELTFSRLTKANSYFDWVLPALYRHASFAP 921 Query: 698 I--------KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------- 742 I N + + + E E E + ++ + Sbjct: 922 ILETYNIGAPFMNPLYDRDVPIRVYKMGIGEIVAGEVAEELSGQYTKELLHNWDDTRTYD 981 Query: 743 ------------LFSPIKNDINEPYILNPSTIDTKG-------------------KTNLE 771 P + + + S + + Sbjct: 982 EQMKEQLEIQFGYQYPYERERKLKQKMTVSELKKRAYLEEEAGELVFDEADVVPLLPKFL 1041 Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS--IT 829 + +RG H+LL+++ ++ + ++E + I Sbjct: 1042 QEEEELTGASRGSAYHRLLELLDFSKKYDEVTLKELIEEQKRSGKLSEEMCTSIREKDIL 1101 Query: 830 RLLENPMMTTAMSCDSY----SEVSVSGKINCP--------KKDIIISGRIDQISISQQN 877 R L P+ +E I+ ++ +++ G ID Sbjct: 1102 RFLNTPVGERMHRAAVRGTLWAEQPFVLGIDADELYKGESLEETVLVQGIIDVWFEEDGE 1161 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + +YKT E + + QL Y + L+ K + +IY Sbjct: 1162 LVVLDYKTDRVFK--EEILREKYHTQLDYYARALEQL-TGKCVKEKIIY 1207 >gi|167038394|ref|YP_001665972.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116798|ref|YP_004186957.1| recombination helicase AddA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|251764573|sp|B0KDB7|ADDA_THEP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|166857228|gb|ABY95636.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929889|gb|ADV80574.1| recombination helicase AddA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1233 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 162/1002 (16%), Positives = 352/1002 (35%), Gaps = 131/1002 (13%) Query: 36 SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95 +E ++A ++Q Q E + + + + K+ + + ++ + Sbjct: 244 EAGLEGYFHAFQREAYEIEQLLQYDNWNEFKNHIQAIEFERLPNAGKD-ANKNVKEEVSN 302 Query: 96 LKEKLKKSQ---------DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++K+K D +I+D + A L + Y+E K++ + Sbjct: 303 IRKKVKDKIKEIKEKFFSDSVEEIKDEIKAL--YPIMEALADLILLFDKKYKEKKREKGI 360 Query: 147 LDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +DF D+ +L + D + + ++ I +DE QD++LIQ E++ + Sbjct: 361 IDFNDIEHFALQILTEIDEEGAVNPSEVALHYREKFEEIFVDEYQDSNLIQEEILSIIAR 420 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + +P F VGD KQSIY F A P + + G+K I L Sbjct: 421 E---------NPPNRFMVGDVKQSIYRFRQANPYIFFEKYNSYS---LDTGEKNQKILLY 468 Query: 262 LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLWEQ 313 +FRS +++ ++ +F N ++ + + + G V+L Sbjct: 469 KNFRSRIEVIEAINYIFKKIMSKNIGEVNYTEEEKLNYGAEYEIPPEDSVTGGAVELHLI 528 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQE----SSASILARRIAYTISNMIGTDTIFSNGK-- 367 + + + ++E D +E + AR +A I + + + + Sbjct: 529 EKQKVEEEVEEKEEEKNEEKDFEEEEEDLIDDIQVEARVVAERIKQLFSQNFMVYDKNIK 588 Query: 368 -KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 RV+ +DI+VL+R T + I + D IK +++L + Sbjct: 589 SYRVVDYRDIVVLLRA---TDRWAPVFLEELTQAGIPAFADTGTGYFDTTEIKTIISLLQ 645 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHV 484 I + D+ + +L+SP+F+F+E+++ + + E + K ++ Sbjct: 646 VIDNPMQDIPLLAVLRSPIFSFTEEELIDLRLEDMEKTIYEAIKKASQREDELGEKAKNF 705 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543 + + + A + +F + + G + L + E+ S Sbjct: 706 LDTLKKWQEKAVYMPVDEFLWYLYKDTGYYSYVAAMPQGVQRQANLRILFERAKQYEETS 765 Query: 544 YSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L I+ + + N N VRIM++H +KGLE PVV + G Q Sbjct: 766 FKGLFNFINFINRLKVSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQFN 825 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + +K+ L P + + + + + +K E R+LYV +TRA Sbjct: 826 TKDLYQKILYHHFLGLGPEFVDFRRRISYPSIVKEAIKYKIKLEGLSEEMRVLYVALTRA 885 Query: 659 SDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKL 700 ++LI+ + + +++ D + + + ++ ++ Sbjct: 886 KEKLILVGSARDIKKNVRKWANAAILQEKVSEYDILNGKSYMDWIGAAVIRHKDLEPLRE 945 Query: 701 TNSI---NKDEWIAYEWSTHHPENTPLERE-------------------------ETIKQ 732 + +++ +E + ++ LE+E E ++ Sbjct: 946 FAGVSLSEEEDASKWEVKLWNKKDVLLEKEKNDKVDVVERLRSLDLDAHYSEFYKEVERR 1005 Query: 733 LMDEQKIPKKLFSPIKNDINEPYIL-----------NPSTIDTKGKTNLESLLSDNQTFN 781 L K + P K + E + + + Sbjct: 1006 LNYVYPYEKACYLPAKLSVTEVKRILNAEVVDEDTTSIFEREVLKTPIFLEKKKGLTAAE 1065 Query: 782 RGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMM 837 +G+ +H ++Q + L K I + + ++ K + + I + + Sbjct: 1066 KGIAMHLVMQKLDLDKDLSLEGIKEQIKDMVDRE--ILTEEQAKEVNIHKIEGFFKTSLG 1123 Query: 838 TTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEYKT 885 + S + EV K+ + I + G ID + + + +YKT Sbjct: 1124 ERMLSSKNVKREVPFHIKLSSREIYKDLPEEYENEFIQVQGIIDCFFEEEDGLVLIDYKT 1183 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + ++E I + Q+ +Y K L++ K + IY+ Sbjct: 1184 DYVQEGKVEEIKERYKVQIELYSKALENI-TGKKVKEKYIYL 1224 >gi|325843353|ref|ZP_08167936.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1] gi|325489382|gb|EGC91755.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1] Length = 1198 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 154/960 (16%), Positives = 324/960 (33%), Gaps = 108/960 (11%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 L+ L+ A + + L F+ + + ++ +++ + ++ + S Sbjct: 262 QDLEYVNRLKDAMNS-----SYEALREAFMNTTLSRFPSAPKKDFDEEMNTICKEARDSF 316 Query: 105 DEFIKIRDRFNTY-----------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 + I+ K + A + + + EAK K +LDF DL Sbjct: 317 KKRIEKIKEKYLTYSNKTHLIHFKKSQEVVEALAKMVLLFHERFSEAKLKRQLLDFSDLE 376 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T LL + + + + I + I+IDE QDT+ +Q +++++ + S Sbjct: 377 WYTLRLLIQDGQATAVAFDIHAQFKEIMIDEYQDTNFMQESIVQAIAK-------IKSPE 429 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIY F AEP + + + K I+L ++RS ++ Sbjct: 430 IPIFMVGDVKQSIYRFRLAEPSIFQGKYTMFS----DGNGKGHKIDLMKNYRSHQQVIDS 485 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + R +G+ V+ +Q Sbjct: 486 TNYIFKQLMDEPVGEINYDEAAMLRLGVLGE----------VNDPFNQNEVHLIDKLQVT 535 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLIT 390 D S+ + A IA TI + + + G+ R++ +DI++L+R Sbjct: 536 DDETDLSTVELEAHHIARTIKRWMDSKQEVYDRKLGRMRLLTYQDIVILMRSLSSVTTFQ 595 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + R Y I + L D + I ++++ + I + D+ V +++SPLF F+E Sbjct: 596 DVFR----QYHIPLFTEQNTDLFDSIEIINMVSCLKVIDNPYQDIPLVGLMRSPLFFFNE 651 Query: 451 DDIFKICTQRHETETV----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 ++ I + + K + ++ + A+ S TL Sbjct: 652 RELSLIKVSSKASSFYELVQFYQNHGEDEFLKQKTKRFVEILERWRFEAKIQSLASLITL 711 Query: 507 ILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-- 563 I + + G LD F++ E ++ L ++ +++ K Sbjct: 712 IYEQTLYYEFVMGLPHGYLRKANLDVFVDKARHYESSTKKGLYGFVNYIDRMQALGKHFG 771 Query: 564 ---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 +AN + VRIM++H +KGLE PVVF+ + + Sbjct: 772 KAKTVTANEDVVRIMSIHKSKGLEFPVVFISQIQKKFNVQDEKGNYILHKKYGVAVKYID 831 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR- 679 + + + + + E RLLYV MTRA +L+ + S + Sbjct: 832 SQLSFTQKTIAQNVVASLIHREMLAEEMRLLYVAMTRAKSKLLFTGVFEVEKKLASLKEV 891 Query: 680 -----------------TWYDMVYDSFHNDERVKK-------IKLTNSINKDEWIAYEWS 715 + D + + ++ + T + W +S Sbjct: 892 ITESGVRLPDSYRLKAVNYADWILPAILKHPDNQEIVATYLGVTPTCLEDASSWKIEIFS 951 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIK--NDINEPYILNPSTIDTKGK------ 767 ++ EE++ + K + + + + S + Sbjct: 952 QQQELEQSMKVEESLAKQPPVIDFEKIFSTRYEHQELVEINAKQSVSQRKLAEETPMFKG 1011 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813 G +H+ +Q + + K Sbjct: 1012 IPELRPQVAYDRPSFMREKKISGAEAGTALHQFMQHLPVMKNHTLESLQQVKERVIEKEM 1071 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKD---IIISGRID 869 +L + ++P+ ++ EV + + + I++ G ID Sbjct: 1072 MTEEMSSRIDL-GQVLEFTKSPLYEKIITALSVKKEVPFMTLVKVDEHEQSQILLQGVID 1130 Query: 870 QISISQQNIFIFEYKTH--HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 ++ + ++I +YKT + + + + Q+ Y K +K+ +P K + C + ++ Sbjct: 1131 LLAEFEDEVYIVDYKTDYIRDFEVQQQELKQRYETQMKYYSKAIKEIFPTKKVSCHVYFL 1190 >gi|293374973|ref|ZP_06621268.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909] gi|292646383|gb|EFF64398.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909] Length = 1198 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 154/960 (16%), Positives = 324/960 (33%), Gaps = 108/960 (11%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 L+ L+ A + + L F+ + + ++ +++ + ++ + S Sbjct: 262 QDLEYVNRLKDAMNS-----SYEALREAFMNTTLSRFPSAPKKDFDEEMNTICKEARDSF 316 Query: 105 DEFIKIRDRFNTY-----------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 + I+ K + A + + + EAK K +LDF DL Sbjct: 317 KKRIEKIKEKYLTYSNETHLIHFKKSQEVVEALAKMVLLFHERFSEAKLKRQLLDFSDLE 376 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T LL + + + + I + I+IDE QDT+ +Q +++++ + S Sbjct: 377 WYTLRLLIQDGQATAVAFDIHAQFKEIMIDEYQDTNFMQESIVQAIAK-------IKSPE 429 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIY F AEP + + + K I+L ++RS ++ Sbjct: 430 IPIFMVGDVKQSIYRFRLAEPSIFQGKYTMFS----DGNGKGHKIDLMKNYRSHQQVIDS 485 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + R +G+ V+ +Q Sbjct: 486 TNYIFKQLMDEPVGEINYDEAAMLRLGVLGE----------VNDPFNQNEVHLIDKLQVT 535 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLIT 390 D S+ + A IA TI + + + G+ R++ +DI++L+R Sbjct: 536 DDETDLSTVELEAHHIARTIKRWMDSKQEVYDRKLGRMRLLTYQDIVILMRSLSSVTTFQ 595 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + R Y I + L D + I ++++ + I + D+ V +++SPLF F+E Sbjct: 596 DVFR----QYHIPLFTEQNTDLFDSIEIINMVSCLKVIDNPYQDIPLVGLMRSPLFFFNE 651 Query: 451 DDIFKICTQRHETETV----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 ++ I + + K + ++ + A+ S TL Sbjct: 652 RELSLIKVSSKASSFYELVQFYQNHGEDEFLKQKTKRFVEILERWRFEAKTQSLASLITL 711 Query: 507 ILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-- 563 I + + G LD F++ E ++ L ++ +++ K Sbjct: 712 IYEQTLYYEFVMGLPHGYLRKANLDVFVDKARHYESSTKKGLYGFVNYIDRMQALGKHFG 771 Query: 564 ---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 +AN + VRIM++H +KGLE PVVF+ + + Sbjct: 772 KAKTVTANEDVVRIMSIHKSKGLEFPVVFISQIQKKFNVQDEKGNYILHKKYGVAVKYID 831 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR- 679 + + + + + E RLLYV MTRA +L+ + S + Sbjct: 832 SQLSFTQKTIAQNVVASLIHREMLAEEMRLLYVAMTRAKSKLLFTGVFEVEKKLASLKEV 891 Query: 680 -----------------TWYDMVYDSFHNDERVKK-------IKLTNSINKDEWIAYEWS 715 + D + + ++ + T + W +S Sbjct: 892 ITESGVRLPDSYRLKAVNYADWILPAILKHPDNQEIVATYLGVTPTCLEDASSWKIEIFS 951 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIK--NDINEPYILNPSTIDTKGK------ 767 ++ EE++ + K + + + + S + Sbjct: 952 QQQELEQSMKVEESLAKQPPVIDFEKIFSTRYEHQELVEINAKQSVSQRKLAEETPMFKG 1011 Query: 768 -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813 G +H+ +Q + + K Sbjct: 1012 IPELRPQVAYDRPSFMREKKISGAEAGTALHQFMQHLPVMKNHTLESLQQVKERVIEKEM 1071 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKD---IIISGRID 869 +L + ++P+ ++ EV + + + I++ G ID Sbjct: 1072 MTEEMSSRIDL-GQVLEFTKSPLYEKIITALSVKKEVPFMTLVKVDEHEQSQILLQGVID 1130 Query: 870 QISISQQNIFIFEYKTH--HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 ++ + ++I +YKT + + + + Q+ Y K +K+ +P K + C + ++ Sbjct: 1131 LLAEFEDEVYIVDYKTDYIRDFEVQQQELKQRYETQMKYYSKAIKEIFPTKKVSCHVYFL 1190 >gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease subunit A [Bacillus licheniformis ATCC 14580] gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580] gi|81609244|sp|Q65LJ9|ADDA_BACLD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis ATCC 14580] gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis ATCC 14580] Length = 1230 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 162/1033 (15%), Positives = 331/1033 (32%), Gaps = 141/1033 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFF 73 I +D+ + + + + L+ + G P L Q + ++ FS L Sbjct: 222 IKEDIALVLEGMRQKLTRALDLTKQPGGPAPRAENFLDDLAQIDRLIQQQDDFSALHELV 281 Query: 74 LT-----------QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 T ++ P+ ++ + EKLK + + +M Sbjct: 282 PTVSFQRLKPCKGDEYDPRLVDEAADLRNSAKKQLEKLKSDYFSRTPEQHLESLREMKPV 341 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEI 177 + L + EAKK+ ++DF DL + +L V + + Sbjct: 342 IQTLVQLVLEYGRRFAEAKKEKAIVDFSDLEHDCLAILSVKNPAGEAVPSEAAKFYRHQF 401 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +L+DE QDT+L+Q +++ + ++ G LF VGD KQSIY F AEP Sbjct: 402 HEVLVDEYQDTNLVQEAILKLVAKEEHEG--------NLFMVGDVKQSIYRFRLAEPLLF 453 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 L + + + +G I+L +FRS +DIL + +F + + Sbjct: 454 LSKYKRFTDDGSGSG---QKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDEQAEL 510 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + E ++ + S + + + + + AR +A I +I Sbjct: 511 KLGASYPPNEATKTELLLIETPSG---------APGEEAEELEAVQLEARAMAGQIRRLI 561 Query: 358 GTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + K R IQ +DI+VL+R P I + I V N + Sbjct: 562 TEKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQIMDEFK----QQGIPVYANLSTGYFE 617 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF- 473 + ++L + I + D+ +L+SP+ E+++ + + + YE ++ + Sbjct: 618 ATEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENEL-SLIRIKDKKAPFYEAMKAYL 676 Query: 474 -----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVID 527 K + + + A+ S + I K G + Sbjct: 677 AAADGDERLSEKLRRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQA 736 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKG 582 L + E S+ L + +E+ RA S + VR+MT+H++KG Sbjct: 737 NLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKG 796 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVF G K + L + + + K L++ Sbjct: 797 LEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLIAMKKKLRRE 856 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYD 683 E R+LYV +TRA ++L + + + ++ +++ D Sbjct: 857 LLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYERFQAKSYLD 916 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739 + + + + I++ + L+ E + + Sbjct: 917 FIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGEERHDRLVQI 976 Query: 740 ------------------PKKLFSPIKNDINEPYILNPSTIDTKGK-------------- 767 P K+ + S + + + Sbjct: 977 QMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYEDEYGDRSLIRPS 1036 Query: 768 -------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPA 818 + RG +H ++Q I + KN ++ + +L Sbjct: 1037 QEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLTRTPE-KNELSRLLDRLVEKELLTE 1095 Query: 819 KEYKNLLL-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC---------PKKDIIISGR 867 + + I + + + EV + ++ + ++I G Sbjct: 1096 DQRAAIEEDDILAFFDTEIGQKLFGARRVEREVPFNMTLSAKEVYPDLESADEPVLIQGI 1155 Query: 868 IDQISISQQNIFIFEYKTHHH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 ID + ++ ++ +YKT + + Q+ +Y + ++ Sbjct: 1156 IDCLFETEDGFYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQLYARAVETMIKMPLK 1215 Query: 921 VCLLIYVSEPKVF 933 L + V Sbjct: 1216 GRALYFFDGGHVL 1228 >gi|266620646|ref|ZP_06113581.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479] gi|288867733|gb|EFD00032.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479] Length = 1244 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 174/1015 (17%), Positives = 334/1015 (32%), Gaps = 135/1015 (13%) Query: 23 LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82 P + + + + E G L F L+S +K Sbjct: 243 GPTAYIPMLTSDLRMLREIGKAEDYASLNEL-------LGCAAFDRLASIRSKDIDADKK 295 Query: 83 NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142 +T + KL+ + + L LA N Y+ AK+ Sbjct: 296 AFVT-GCRDRVKKAVGKLRDLYCFESMETVVRDMRGTAGAVRMLLKLAGEFNDRYQAAKQ 354 Query: 143 KNCVLDFEDLIINTND-LLKKRDV--------------------SAWIRYKIDQEINHIL 181 + ++DF DL + LL+K D + + ++ ++ IL Sbjct: 355 EKNLVDFGDLEHYALEVLLEKPDGESEECAGDSMDDSLDASGRRPSAVADELSRQFEEIL 414 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QD++ +Q +I +++ + +F VGD KQSIY F A P+ L++ Sbjct: 415 VDEYQDSNDVQETLIHAISRE-------RFGTPNVFMVGDVKQSIYKFRLARPELFLKKY 467 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + + IEL +FRS +L+ +++VF T Sbjct: 468 ESYPRE----EGLYQTIELHQNFRSRDSVLSGINEVFYQIMTKGLGGILYTEDAALHPGA 523 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + + + ++ + Q + D+L +S + AR I + ++ +T Sbjct: 524 VFEPTEETVGGKLELHLVNTGGIQLKQLEMESDALD-YTSREMEARLIVSRMKELVNPET 582 Query: 362 IFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + R D+++L+R + + I R + Sbjct: 583 GLKIWDKKEKRYRTACYGDMVILLRSLSG---FAEDFVNILMNEGIPAYAERRTGYFTAI 639 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHETETVYEYI 470 ++ ++ I + D+ +LKSP+ S++D+ ++ ++ + +Y Sbjct: 640 EVETVLCFLSVIDNPMQDIPLAAVLKSPMVGASDEDLARLMAVFKRTAKKGQDRGIYGAW 699 Query: 471 QKFANCGIS---------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + K + E +A + S H+ +I + Sbjct: 700 LYYLENCPEEEREEELYRKLALFFDELAEYRRMAGYLSIHELLYVIYENTGYYDYVAAMP 759 Query: 522 -GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMT 576 G+ LD + E+ SYS L I +E+ A + + N VRI++ Sbjct: 760 AGDARQANLDMLVEKASAYEKTSYSGLFHFIRYIEKLKKYDTDFGEAALAGDGNTVRILS 819 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE P++FL G + K+ I P L + K+ + L Sbjct: 820 IHKSKGLEFPIIFLAGMGKKFNKQDLYGKILIDPDLGIATDYLDLDLRVKTSTLKKNVLR 879 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR----------------- 679 + L+ E R+LYV MTRA ++LI+ ++K Sbjct: 880 RRLELEALGEELRVLYVAMTRAKEKLIMTGTDRYLDKKLERFSDIKRTAGQIPFTILSTA 939 Query: 680 -TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 ++ D + S + + E+S +E + K +E Sbjct: 940 DSFLDWLLMSLSGKLSESALLSEAGVETGLMTVREYSVADLVGVEIEHQAEKKLSKEELL 999 Query: 739 IPK-----------------KLFSPIKNDINEPYILNPSTIDTKGKTNLESLL------- 774 P DI L+ S + +G+ E Sbjct: 1000 NFDCSRIYDEAYAAGISAAFSYHYPHTADIGLHTKLSVSELKKQGQMVDEEESTFLPTIP 1059 Query: 775 ----------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 RG H+ L+++ + T+ T + + + +E L Sbjct: 1060 AFLMEENGKKEQGGGAFRGTAYHRALELLEFPAMKTLADVETALETFHREKYMDEESLAL 1119 Query: 825 LLS--ITRLLENPMMTTAMSCDS----YSEVSV-------SGKINCPKKDIIISGRIDQI 871 L + I L +P+ + S Y E ++ + ++I G ID Sbjct: 1120 LDAGIIWNFLSSPLGRRMSAAQSKGLLYKEQQFVIGIPAREMEVCDSGELVLIQGIIDAY 1179 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + +YKT H V + + QL Y++ L+ K ++ +IY Sbjct: 1180 MEEGDGLVLIDYKTDHVVKGHESLLTERYGIQLEYYKRALEQM-TGKRVLEKIIY 1233 >gi|323701383|ref|ZP_08113057.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574] gi|323533642|gb|EGB23507.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574] Length = 1243 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 153/1067 (14%), Positives = 341/1067 (31%), Gaps = 151/1067 (14%) Query: 1 LKNRFGLSLNESYELI------YKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKK 49 L + F + ++ + + + + + + + L+ + G P T+ Sbjct: 196 LADGFAIPQEQTLDDLPWINQVKEYIGQELDGVLGMLKQAALLARQPGGPEPYSATLAAD 255 Query: 50 AQTLQQASQTQCIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108 +Q LS L K P K I + + ++ L++K K+ E Sbjct: 256 IVNIQSLRDCCGDTWDKMYLSFADLKWGKLKPCKGEIDEALKERVKGLRDKAKERVKEIA 315 Query: 109 K---IRDRFNTYKMFKSTLASLT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 D + +S + L Y + K+ ++DF DL +L Sbjct: 316 ATYFYADAELILRDLRSLAPLIQELAQLTIDFMDLYRQKKQAKGLVDFADLEHYCLAILL 375 Query: 162 KRD------VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 + V + + ++ ++ +L+DE QD + +Q +++ + P Sbjct: 376 DEESKPGQLVPSPVARELQEQFAEVLVDEYQDINGVQETILQLVA-----------KPHN 424 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F AEP L + + ++L +FRS + ++ V+ Sbjct: 425 RFMVGDVKQSIYRFRLAEPGLFLSKYQQYGV---PENGAGCRVDLTKNFRSRSGVVNAVN 481 Query: 276 KVFSIPENAQ--GLSEDSTTTIRHRSSRI-------GQVGTVQLWEQVVSQHDSQCNPQQ 326 VF + D+ +R+ + + + L ++ + + + + Sbjct: 482 FVFRQIMTRGAGEVDYDAAAELRYGADFPPREDGAAEEPVELYLIDRKEPEVTAVESQED 541 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF----------SNGKKRVIQAKDI 376 + + L + + AR + I M+ G R + +DI Sbjct: 542 SEGSPPDEELEELDADQAEARLVGRRILEMVKGTADRPGPPLKVWDKHAGCYRPVTYRDI 601 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 ++L+R I + + + ++ ++L + I + D+ Sbjct: 602 VILLRATTGRAN---TFLEELRSLGIPTYADLSTGYFEAIEVETFLSLLKVIDNPRQDVP 658 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYE---YIQKFANCGISKFQHVIKYIHELIH 493 +L+SP+ D+ I + ++ + Sbjct: 659 LAAVLRSPMVGLKAADLAAIRLCAPAGDFYDAVRTAAGSNLGEVSHVLASFLENLARWRT 718 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 A+ D + G + L + + E S L + Sbjct: 719 QARRGPLADLIWTLYRETGYYDYVGGMVGGTQRQANLRVLYHRAKQYEGTSLRGLFRFLR 778 Query: 553 ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 +E+ R+ S N + VRIM++H +KGLE PVVF+ G Q K M Sbjct: 779 FVERLRDTGSDLGSARSLSENEDVVRIMSIHKSKGLEFPVVFVAGLGKQFNLRDLTKDML 838 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + + P I + + + + +K+ + E R+LYV +TRA ++LI+ Sbjct: 839 MHKEMGVGPQIIDLAARVSYPSLPKLLIRQRIKRESVAEEMRVLYVALTRAREKLILVGS 898 Query: 668 -------------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 + + +T D + + +++ + Sbjct: 899 VRDLAKSLEKWCGPVNHPNWPLPDGDLLSAKTCLDWLCPAVARHRAGRELLKLAGCEAEP 958 Query: 709 WIAYEWSTHHPENTP-----------------------LEREETIKQLMDEQKIPKKLFS 745 + + E + +I ++L Sbjct: 959 VQQVATDASSWSVQVVNMADMQGKAVAGQDAYSEWLAHVRKMEPLADNGYLTEIDRRLGW 1018 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDN---------------------QTFNRGL 784 + + K + +LE+ ++ RG Sbjct: 1019 RYPWSEVTARPAKVAVTEIKRRFDLEANQEEDNEFHRPVLTTRPRFLQQHQGLTAAERGS 1078 Query: 785 IIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM- 841 IH ++Q I +P+ ++ + + + L P + I + +P+ + Sbjct: 1079 AIHLVMQHIPLDGVPDEEKIDSLLQQLIQKEILTPEQAAVIDPRLIIKFFTSPIGRRVLQ 1138 Query: 842 SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 + E+ S + + +++ G ID + + + +YK+ Sbjct: 1139 APKVKRELPFSLTLPAIEVYPDLSSQAGRDELVLVQGVIDCLVDEGDGLLLIDYKSDKVW 1198 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV-SEPKVFII 935 P + + + Q+++Y + ++D + + +IY+ ++ + Sbjct: 1199 PGQQSPV-DRYRGQMNLYTRAVEDIL-GRRVKERVIYLFENGEILNL 1243 >gi|126698625|ref|YP_001087522.1| ATP-dependent nuclease subunit A [Clostridium difficile 630] gi|123174482|sp|Q18AN9|ADDA_CLOD6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|115250062|emb|CAJ67882.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Clostridium difficile] Length = 1275 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 160/1042 (15%), Positives = 338/1042 (32%), Gaps = 165/1042 (15%) Query: 33 KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------ 86 + + E + K A + QA + +E + ++S K I Sbjct: 243 EELETFAEKLSVEYKKIAD-ISQAC-NKSWDEAYKKMASMSFENYVKGVKRISKDAPSYI 300 Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEE 139 +E +K+ +++K KKS + + + + + + K Y Sbjct: 301 KESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSN 360 Query: 140 AKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 K++ ++DF D+ ++L V + I + I IDE QD++L+Q Sbjct: 361 KKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEV 420 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 +++++ ++ F VGD KQSIY F A+P+ + G Sbjct: 421 LLKAVA---------NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSS 468 Query: 255 FSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------V 305 I L +FRS +++ V+ +F EN + + ++ Sbjct: 469 HRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIG 528 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE-----SSASILARRIAYTISNM---- 356 G ++ + E + + AR + I ++ Sbjct: 529 GATEIHLIQKDNKLDDDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNIIKDLMKVN 588 Query: 357 ----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I R ++ +DI++L+R + + I + Sbjct: 589 EDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGY 645 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----- 467 D + IK +++L + I + D+ + +LKSP+F F+ +D+ I Q + Sbjct: 646 FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705 Query: 468 -------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 E + I+K + + + E + + S +F + Sbjct: 706 AEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSAN 568 + G++ L + E+ S + ++ +E + N Sbjct: 766 AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGEN 825 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N VRIM++H +KGLE PVV G + K + +L P + + Sbjct: 826 ANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFP 885 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQR 679 + L + E R+LYV TRA ++LII ++ + + Sbjct: 886 SIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTI 945 Query: 680 TWYDMVYDSFHNDERVK------------------KIKLTNSINKDEWIAYEWSTHHPEN 721 + Y+++ D + + +K + + E Sbjct: 946 SQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEK 1005 Query: 722 TPLEREETIKQLMD-------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 E +E+I+++++ E + P + +P ++ + I Sbjct: 1006 KSDEEKESIEEILEKIDVNNPDSDYYGEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNN 1065 Query: 769 ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 E RG I+H +++V+ + + Sbjct: 1066 YEEELINTIFEQKVILKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKS 1125 Query: 807 SYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK---- 859 +K ++ +++ I + + + ++ + E S+ ++N Sbjct: 1126 QIRGFVSKGIITEKQASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIY 1185 Query: 860 --------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905 + +++ G +D I + +YKT + I I + QL Sbjct: 1186 EKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLD 1245 Query: 906 IYEKILKDSYPNKSLVCLLIYV 927 +Y I++ KS+ IY+ Sbjct: 1246 LYADIIETL-TGKSVKEKCIYL 1266 >gi|255305967|ref|ZP_05350139.1| ATP-dependent nuclease subunit A [Clostridium difficile ATCC 43255] Length = 1275 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 160/1042 (15%), Positives = 338/1042 (32%), Gaps = 165/1042 (15%) Query: 33 KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------ 86 + + E + K A + QA + +E + ++S K I Sbjct: 243 EELETFAEKLSVEYKKIAD-ISQAC-NKSWDEAYKKMASMSFENYVKGVKRISKDAPSYI 300 Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEE 139 +E +K+ +++K KKS + + + + + + K Y Sbjct: 301 KESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSN 360 Query: 140 AKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 K++ ++DF D+ ++L V + I + I IDE QD++L+Q Sbjct: 361 KKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEV 420 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 +++++ ++ F VGD KQSIY F A+P+ + G Sbjct: 421 LLKAVA---------NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSS 468 Query: 255 FSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------V 305 I L +FRS +++ V+ +F EN + + ++ Sbjct: 469 HRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIG 528 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE-----SSASILARRIAYTISNM---- 356 G ++ + E + + AR + I ++ Sbjct: 529 GATEIHLIQKDNKLDDDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNIIKDLMKVN 588 Query: 357 ----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I R ++ +DI++L+R + + I + Sbjct: 589 EDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGY 645 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----- 467 D + IK +++L + I + D+ + +LKSP+F F+ +D+ I Q + Sbjct: 646 FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705 Query: 468 -------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 E + I+K + + + E + + S +F + Sbjct: 706 AEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSAN 568 + G++ L + E+ S + ++ +E + N Sbjct: 766 AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGEN 825 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N VRIM++H +KGLE PVV G + K + +L P + + Sbjct: 826 ANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFP 885 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQR 679 + L + E R+LYV TRA ++LII ++ + + Sbjct: 886 SIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTI 945 Query: 680 TWYDMVYDSFHNDERVK------------------KIKLTNSINKDEWIAYEWSTHHPEN 721 + Y+++ D + + +K + + E Sbjct: 946 SQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEK 1005 Query: 722 TPLEREETIKQLMD-------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 E +E+I+++++ E + P + +P ++ + I Sbjct: 1006 KSDEEKESIEEILEKIDVDNPDSDYYSEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNN 1065 Query: 769 ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 E RG I+H +++V+ + + Sbjct: 1066 YEEELINTIFEQKVILKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKS 1125 Query: 807 SYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK---- 859 +K ++ +++ I + + + ++ + E S+ ++N Sbjct: 1126 QIRGFVSKGIITEKQASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIY 1185 Query: 860 --------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905 + +++ G +D I + +YKT + I I + QL Sbjct: 1186 EKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLD 1245 Query: 906 IYEKILKDSYPNKSLVCLLIYV 927 +Y I++ KS+ IY+ Sbjct: 1246 LYADIIETL-TGKSVKEKCIYL 1266 >gi|255100077|ref|ZP_05329054.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-63q42] Length = 1275 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 160/1042 (15%), Positives = 338/1042 (32%), Gaps = 165/1042 (15%) Query: 33 KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------ 86 + + E + K A + QA + +E + ++S K I Sbjct: 243 EELETFAEKLSVEYKKIAD-ISQAC-NKSWDEAYKKMASMSFENYVKGVKRISKDAPSYI 300 Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEE 139 +E +K+ +++K KKS + + + + + + K Y Sbjct: 301 KESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSN 360 Query: 140 AKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 K++ ++DF D+ ++L V + I + I IDE QD++L+Q Sbjct: 361 KKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEV 420 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 +++++ ++ F VGD KQSIY F A+P+ + G Sbjct: 421 LLKAVA---------NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSS 468 Query: 255 FSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------V 305 I L +FRS +++ V+ +F EN + + ++ Sbjct: 469 HRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIG 528 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE-----SSASILARRIAYTISNM---- 356 G ++ + E + + AR + I ++ Sbjct: 529 GATEIHLIQKDNKLDDDIINDKDDRINNKEDEIEEEEKLDNIQLEARMVGNIIKDLMKVN 588 Query: 357 ----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I R ++ +DI++L+R + + I + Sbjct: 589 EDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGY 645 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----- 467 D + IK +++L + I + D+ + +LKSP+F F+ +D+ I Q + Sbjct: 646 FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705 Query: 468 -------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 E + I+K + + + E + + S +F + Sbjct: 706 AEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSAN 568 + G++ L + E+ S + ++ +E + N Sbjct: 766 AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGEN 825 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N VRIM++H +KGLE PVV G + K + +L P + + Sbjct: 826 ANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFP 885 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQR 679 + L + E R+LYV TRA ++LII ++ + + Sbjct: 886 SIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTI 945 Query: 680 TWYDMVYDSFHNDERVK------------------KIKLTNSINKDEWIAYEWSTHHPEN 721 + Y+++ D + + +K + + E Sbjct: 946 SQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEK 1005 Query: 722 TPLEREETIKQLMD-------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 E +E+I+++++ E + P + +P ++ + I Sbjct: 1006 KSDEEKESIEEILEKIDVDNPDSDYYSEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNN 1065 Query: 769 ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 E RG I+H +++V+ + + Sbjct: 1066 YEEELINTIFEQKVILKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKS 1125 Query: 807 SYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK---- 859 +K ++ +++ I + + + ++ + E S+ ++N Sbjct: 1126 QIRGFVSKGIITEKQASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIY 1185 Query: 860 --------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905 + +++ G +D I + +YKT + I I + QL Sbjct: 1186 EKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLD 1245 Query: 906 IYEKILKDSYPNKSLVCLLIYV 927 +Y I++ KS+ IY+ Sbjct: 1246 LYADIIETL-TGKSVKEKCIYL 1266 >gi|291613181|ref|YP_003523338.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1] gi|291583293|gb|ADE10951.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1] Length = 1134 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 180/972 (18%), Positives = 337/972 (34%), Gaps = 98/972 (10%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ + ++ W + +V G T KA L+ A Sbjct: 213 LRADLAVDMDFDPVA----DWGMCGNSEEVFFAFVRQLANDGTGTQKSKASELELAWTDS 268 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 EERF+ + TQ P+ T+ + + + ++RD + + Sbjct: 269 RPEERFAKVQPSLFTQAGEPRSFKPTK--QQDAEAFLVTREALFGSLQEVRDTLAEQQAY 326 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + A L Y+ K + +DF DL LL++ + + ++YK+D H+ Sbjct: 327 RLNEAVLHCGVAFLERYQALKAQKQQMDFSDLEWQLCRLLQQSEHAETMQYKLDSRYRHV 386 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ +QW+++R+ + + T+F VGD KQSIY F A+ + Sbjct: 387 LLDEFQDTNPLQWQILRAWFDASVAVDSQ----PTVFVVGDPKQSIYRFRRADARLFGVA 442 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + Q+ + Q L+ R++ ++ V+ VF D + H++ Sbjct: 443 REYLQEYFSAQTQGN-----SLTRRNSQPVVDAVNAVFHEQP-------DGFEFVEHQTH 490 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP--------------QESSASILA 346 + G V + V++ N + + + +E + I A Sbjct: 491 QKELPGYVLVLPLAVAEVIPSPNGGGDINGAGGEGEELRLRDPLTTPRDEAEEGARQIEA 550 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + A + + ++ G++R DI+VLVR R + R I + Sbjct: 551 AQFAEMLQTIARDWSVNEGGQERRATYGDIMVLVRSRTHLTVYEEALRA----RHIPFIS 606 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-- 464 + R L D L +D+ AL F+++ DL+ +L++P+F S+ D+ ++ E Sbjct: 607 SRRGGLLDTLEAEDVQALLMFLITPFADLALAQVLRTPIFACSDADLMRLAQNSAEYGAT 666 Query: 465 ------------------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 T + + + + + +A HD Sbjct: 667 SSEGGAEISAQRSALGTRTSWWQRLQHLGDPSPALRRATGLLQRWLALADKLPVHDLLDR 726 Query: 507 ILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562 I ++ + E+ L F+ L + Y SL + EL + + Sbjct: 727 IYFEGDVLARYAAVLPPEMRAKVAANLHAFMEIALSVDAGRYPSLPRFLQELRELRDSKD 786 Query: 563 RAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 A + VRI TVH +KGLE+P+V+L+D ++ S + P+ P Sbjct: 787 DAPDEGKLGSAGDAVRIYTVHESKGLEAPIVWLLDANAEKRSMAGNDVLLDWPTQEPQPS 846 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 SR + L + E LLYV MTRA LI+ K++ Sbjct: 847 HFSLYADQASRGKKRAHLFEQDAAQQAREEMNLLYVAMTRAQQALIVSG---NKGGKENR 903 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737 TWY+ + + E + + +++ K P P + + ++ Sbjct: 904 STTWYERIAAVARDQENPLRKAVPSAVEKQGAAGL---VTLPAIEPAGKRAARNTMQQQR 960 Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 I ++ + + ST G+ + G + FT P Sbjct: 961 GIWLHALLQHLSETSPDVTTSHSTKSASGQVAGFRPPLTPRPLPAG-------EGAFTGP 1013 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857 + P E+++LL LL P + Y Sbjct: 1014 GE-------REMLQQRLGIPFAEFESLLQQAQHLLTLPQLVRFFDDRQYRNACNEMPYIN 1066 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 + ++ RID++ +++ +YK + Q+ Y +K Y Sbjct: 1067 ARGELK---RIDRLVEFDDEVWVVDYKLG------DSEDADRYRQQMQEYRAAMKSVYAG 1117 Query: 918 KSLVCLLIYVSE 929 K + C L++ Sbjct: 1118 KVVRCALVFADG 1129 >gi|254974592|ref|ZP_05271064.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-66c26] gi|255091983|ref|ZP_05321461.1| ATP-dependent nuclease subunit A [Clostridium difficile CIP 107932] gi|255313717|ref|ZP_05355300.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-76w55] gi|255516399|ref|ZP_05384075.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-97b34] gi|255649498|ref|ZP_05396400.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-37x79] gi|260682665|ref|YP_003213950.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196] gi|260686264|ref|YP_003217397.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291] gi|260208828|emb|CBA61747.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196] gi|260212280|emb|CBE03030.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291] Length = 1275 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 158/1027 (15%), Positives = 334/1027 (32%), Gaps = 164/1027 (15%) Query: 48 KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLKEKLK 101 KK + QA + +E + ++S K I +E +K+ +++K K Sbjct: 257 KKIANISQAC-NKSWDEAYKKMASMSFENYVKGVKRISKDAPSYIKESKEKAKTIRDKTK 315 Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLII 154 KS + + + + + + K Y K++ ++DF D+ Sbjct: 316 KSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSNKKREKGIIDFNDIEH 375 Query: 155 NTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 ++L V + I + I IDE QD++L+Q +++++ Sbjct: 376 FALNILTDIDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEVLLKAVA--------- 426 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 ++ F VGD KQSIY F A+P+ + G I L +FRS + Sbjct: 427 NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSSHRKIMLYKNFRSREE 483 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWEQVVSQHDS 320 ++ V+ +F EN + + ++ G ++ Sbjct: 484 VVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIGGATEIHLIQKDNKLD 543 Query: 321 QCNPQQESWTSYFDSLPQE-----SSASILARRIAYTISNM--------IGTDTIFSNGK 367 + E + + AR + I ++ I Sbjct: 544 DDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNIIKDLMKVNEDGKIQKVYDKGIDG 603 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R ++ +DI++L+R + + I + D + IK +++L + Sbjct: 604 YRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGYFDTIEIKTILSLLQI 660 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------------------EY 469 I + D+ + +LKSP+F F+ +D+ I Q + E Sbjct: 661 IDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKSTAEYDGFTDSQNETES 720 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 + I+K + + + E + + S +F + + G++ Sbjct: 721 EFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYYAYVGALPGGSQRQAN 780 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGL 583 L + E+ S + ++ +E + N N VRIM++H +KGL Sbjct: 781 LKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGENANVVRIMSIHKSKGL 840 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVV G + K + +L P + + + L + Sbjct: 841 EFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFPSIAKEALKSKINIEN 900 Query: 644 QEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQRTWYDMVYDSFHNDER 694 E R+LYV TRA ++LII ++ + + + Y+++ D Sbjct: 901 LSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTISQYEILKGKNFLDWI 960 Query: 695 VK------------------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + + +K + + E E +E+I++++++ Sbjct: 961 MPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEKKSDEEKESIEEILEK 1020 Query: 737 QKIPKK-------------LFSPIKNDINEPYILNPSTIDTKGKT--------------- 768 + P + +P ++ + I Sbjct: 1021 IDVDSPDSDYYSEIEKKLNYIYPYEFSTRKPATISVTEIKKIQNNYEEELINTIFEQKVI 1080 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 E RG I+H +++V+ + + +K ++ Sbjct: 1081 LKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKSQIRGFVSKGIITEKQ 1140 Query: 822 KNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK------------------K 860 +++ I + + + ++ + E S+ ++N + Sbjct: 1141 ASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIYEKLINNDDKKLYDNE 1200 Query: 861 DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 +++ G +D I + +YKT + I I + QL +Y I++ KS+ Sbjct: 1201 SVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLDLYADIIETL-TGKSV 1259 Query: 921 VCLLIYV 927 IY+ Sbjct: 1260 KEKCIYL 1266 >gi|290968022|ref|ZP_06559571.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str. 28L] gi|290781928|gb|EFD94507.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str. 28L] Length = 1217 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 143/971 (14%), Positives = 306/971 (31%), Gaps = 117/971 (12%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQK--------NIITQEINKKSPDLK-EKLKKS 103 LQ + E + + T+ +K ++I S L +KL Sbjct: 257 LQGVLEKHTWEMTARAVKAVTFTRLPALRKLTPEDKACWEACKKIRTDSKKLIQDKLCPV 316 Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + A YE+AK++ +DF DL +L Sbjct: 317 YFAVSSADLLDGMRAVLPVMKGLVQVTSDFAAAYEKAKREKGWIDFSDLEHLCLKILSAP 376 Query: 164 D------VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 + V + + K+ ++ +LIDE QDT+ +Q + + + S F Sbjct: 377 ESTPDRIVPSAVARKLQEKYAEVLIDEYQDTNGVQELITQLV-----------SRTNNRF 425 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F A+P L + + ++ I+L +FRS IL V++V Sbjct: 426 MVGDIKQSIYRFRLADPSLFLEKYKRFRREPQAVE---RCIDLNRNFRSMPQILAAVNEV 482 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 F+ + + R + + S ++E+ + + Sbjct: 483 FAAIMTEEAAGLAYGEREFLHAGRGPSDHPHTVSGRTEVCLLSTGEKEKETTEATEATAQ 542 Query: 338 QESSASILARRIAYTISNMIGTDT--IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 ++++ + IA I +++ + T +G + I++L+R + Sbjct: 543 EQTAFEQESAYIAEKIQHLLASHTYITEKDGTHTPLSYGHIVILLRSPAGKA---EVLVQ 599 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 I + ++ +++L + I + + D+ +L+SPL SE + + Sbjct: 600 ALQQAGIPSFAEQNGGYFAAIEVQIMLSLLQCIDNPQQDIPLAAVLRSPLVGVSEACLAE 659 Query: 456 ICTQRHETETVYEYIQKFANCGISK---FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 + S Q ++ + ++ S + + Sbjct: 660 LRLLGAGPLWRNAARYITQGENSSAVTALQQFLQQLESWRTYSRRHSVAELIWRLFSDTA 719 Query: 513 GRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHS 566 + G+ L + E++ + L + L++ + Sbjct: 720 YYEYVGGLPGGSIRQANLKALYERARQYEEHGFRGLFRYLRLLDKMKEDGVDLAPAKVAG 779 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 + VRIM++H +KGLE PVV + D G + + +L + Sbjct: 780 EKEDVVRIMSIHKSKGLEFPVVIVADMGKAFNRQDWNEPILFHHTLGIGLKQYDTDWRMS 839 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSN 677 + + + E R+LYV MTRA + L++ H Sbjct: 840 YPTLAWNGIRAQSAWESTAEEERILYVAMTRAKELLLLIGHTSHLANDWNRWCQGVPPER 899 Query: 678 QRTWYDMV---------------------------------------------YDSFHND 692 ++++D V D Sbjct: 900 AKSYWDWVMPTVLKNCSTAPALTTAIETATDGVWQNDIWQVRVQCSLPAVRSSRCKGERD 959 Query: 693 ERVKKI----KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 R+ + +W +P+ + ++ ++ +Q+ ++ + Sbjct: 960 PRLAALQEGNPTGTEPPAWLEERLQWRYAYPQAVTAAAKLSVSEIKRQQQEWEQAALQAE 1019 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 ++ + D + L + +N G +HK +Q I Sbjct: 1020 RGLSRLLPEMATEEDPFAQPPLWEVTDENKMTGAAYGTAMHKAMQYIAGNTHAGLDEIRA 1079 Query: 807 SYCT-KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS-CDSYSEVSVSGKINC------ 857 + ++ A E + + I P+ + + E S + Sbjct: 1080 DLVQWEKEGIFSAAERAAIKVAQIRAFWLQPLGKRMAASPVVHREYPFSVLLQGNPYLPT 1139 Query: 858 --PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915 + +++ G +D + + I +YKT E + QL+IY++ ++ Sbjct: 1140 LEAGEAVLVQGVLDVLFQEGEEWVILDYKTDRL--STPEAFRERYHVQLAIYKQAVEQV- 1196 Query: 916 PNKSLVCLLIY 926 + + + IY Sbjct: 1197 TGRKVKEVYIY 1207 >gi|225574652|ref|ZP_03783262.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM 10507] gi|225038120|gb|EEG48366.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM 10507] Length = 1221 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 151/994 (15%), Positives = 332/994 (33%), Gaps = 118/994 (11%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL-TQKFTPQKNIITQEINKKSPDLKE 98 E L + L + + + E LS L T+K ++ + + + +KE Sbjct: 248 EPMVEADLALVERLCRITDYDEMGEALEGLSYARLSTKKDLAVSQLLKERVQENRKQMKE 307 Query: 99 KLKKSQDEFIKIRDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 +L K Q+++ + +T+ + + K++ ++DF D+ Sbjct: 308 RLGKLQEQYFYTTSEGILSDFRRCRGPMQVLITVTLRFLEKFSQKKREKNLVDFADMEHF 367 Query: 156 TNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211 ++L K++ +++ Q ILIDE QD++ +Q ++ Sbjct: 368 ALNILVKKEGERCTPTQAAWELSQRYEEILIDEYQDSNYVQEMLL-------TYVSGWAK 420 Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271 + +F VGD KQSIY F A P + + T + I+L +FRS A +L Sbjct: 421 QKKNIFMVGDVKQSIYRFRLAVPDLFMEKYHRY----TLEDSQEQRIDLHKNFRSRAQVL 476 Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 ++ +F + + G V E + D++ + Sbjct: 477 DGINFLFRQIMGQELGKVEYDQEAAL------YPGAVFPEENSLESSDTELLLIPQETME 530 Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLI 389 + + + A IA I M+G + + G R ++ DI+VL+R Sbjct: 531 LMEDKEATTQREVEALAIAQRIHQMVGKERVLDKDSGTYRPVRYGDIVVLLRTVSGWA-- 588 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 R + I + L + ++ + ++ F +L SP+ + Sbjct: 589 EDFLR-VFAGQGIPAYTASKTGYFSALEVVTVLNYLHICDNPLQEIPFTAVLHSPIVGCT 647 Query: 450 EDDIFKICTQRHE----TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 ++ + T + ++ + C K + +K E + H Sbjct: 648 AQELAILKTSAPKLPVYARCLHYVQEGEEVCLRRKLESFLKIFQEHRKKVPYTPIHQLIQ 707 Query: 506 LILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PP 559 IL + + G + L+ + + EQ SY L I +E+ Sbjct: 708 EILEETGYGRYAGALPGGRQRQANLNMLVEKAMDFEQTSYRGLFNFIRYIEKIQKYNVDF 767 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 ++ + V+I+++H +KGLE P+VF+ G + + + P L + Sbjct: 768 GEVNLSGSSEDTVQILSIHKSKGLEFPIVFVAGMGKKFNQQDLNAMVVVHPDLGLGVDVV 827 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----- 674 + + + LK E R+ YV +TRA ++LI+ + ++ Sbjct: 828 DPKLRVRCPTLPKQLIRAQLKDENLGEELRVFYVALTRAKEKLILTGTVSKLEKRIRDCA 887 Query: 675 --------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS----- 715 + + +D + + ++++ + + + Sbjct: 888 ALLEREKERLPYSLLAGAQCGWDWILPALARHPAMEELYDRFEVFHGRALFEQEPAKFHI 947 Query: 716 --THHPENTPLEREETIKQLMDEQKIPKK-------------------LFSPIKNDINEP 754 E EE +++ + +++ ++ P + P Sbjct: 948 QVAEAETLVVGELEEKLQRQLLRERMEQENWEEPEDEETYRVLEERFSYLYPYEILEQIP 1007 Query: 755 YILNPSTIDTKGKTNLESL-------------------LSDNQTFNRGLIIHKLLQVIF- 794 + S + + + +S + Q +RG + H++++ + Sbjct: 1008 VKVTVSELKRRQQAEEDSDFLYFEPDVIPLVPDFIEKKEEEYQGASRGTVYHRVMERLDY 1067 Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS----YSEV 849 T + + + +E + + I +LL + + + Y E Sbjct: 1068 TRAGSEEQIQEQLEEMCLSGRMSRQERDCVKVEDIWKLLCSELGKRMALAAAQGRLYREQ 1127 Query: 850 SVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901 +++I++ G ID + + ++ + +YKT P + + + Sbjct: 1128 PFVISQPASQISREWPDRENILVQGMIDAWFLEEDHLVLVDYKTDRVYPGQERLLREKYR 1187 Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL Y + LK K ++ S K + Sbjct: 1188 VQLENYAQALKRLTGKKVAEKVIYSFSMSKEIRV 1221 >gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1] gi|148849878|gb|EDL64052.1| AddA [Bacillus sp. SG-1] Length = 1258 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 154/1051 (14%), Positives = 331/1051 (31%), Gaps = 140/1051 (13%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEE 64 E + D+ + + L+ E G P L A+ L AS + E Sbjct: 223 IEALKFDIMLSLKGAQALFQRAYDLTKEPGGPAPRAENFLDDLGIAEQLS-ASFQKSWSE 281 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY------- 117 +L S ++ + + ++ +++ L++K KK ++ + Sbjct: 282 GQALFQSIKFSRLKPCKGDEYDSDLVEEAKTLRDKGKKMIEKLAEDFFSRKPETYLRDMK 341 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYK 172 KM + + + + + K + V+DF DL +++ ++ + Sbjct: 342 KMRGVVASLVEAVRGFSHKFNALKNEKGVVDFADLEHYCLEIMTDPAEDGELKPSFAAME 401 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 ++ +L+DE QDT+L+Q ++ +T D LF VGD KQSIY F A Sbjct: 402 YRKQFKEVLVDEYQDTNLVQESILGLVTADEEALG-------NLFMVGDVKQSIYRFRLA 454 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSED 290 EP L + + + I+L +FRS ++L + +F N + D Sbjct: 455 EPNLFLSKYNRFT---PSGAETGMKIDLSRNFRSRLEVLEGTNFLFKQIMGVNVGDIEYD 511 Query: 291 STTTIRHRSSRIGQVGT-VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + ++ +++ S + + I AR + Sbjct: 512 HEALLVKGAAYPEDEKYPIEVAVINQSDDEVPLAESASDLEGLVYDEADLEKSVIEARYM 571 Query: 350 AYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 A + +I + G+ R +Q +DI++L+R + I + Sbjct: 572 AQKVKELISEGKQVYDAKAGRHRKLQYRDIVILLRSM----PWAPEIMEEFKKHGIPIYA 627 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 N + + +++L + I + D+ V +L+SP+ E+ + ++ Sbjct: 628 NLSSGYFEATEVAIMLSLLKVIDNPYQDIPLVSVLRSPIVGIDEEGLAEVRIHSKSGTYY 687 Query: 467 YEYIQKFANCG--------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QF 517 + + K + + A+ S D + + Sbjct: 688 EAVQRFVSKKQSEVNNEEAHEKLSRFLSSLTIWRTKARQGSLADLVWQLYRDTRFYDFAG 747 Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEV 572 G + L + + E+ S+ L + +++ RA S + V Sbjct: 748 GMPGGKQRQANLRALYDRARQYEETSFRGLFRFLRFIDRMRERGDDLGAARALSEQEDVV 807 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 R+MT+H++KGLE PVVF+ Q + + + + Sbjct: 808 RMMTIHSSKGLEFPVVFVAGLSRQFNLMDLNQSYLLDKEFGFASKYLDPEKRISYPSLPQ 867 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE------------------- 673 + + T E R+LYV +TRA ++L + + + Sbjct: 868 LAFKRKKRLETIAEEMRVLYVALTRAKEKLYLIGTVKDAEKSMKQWKEAAPQTDWLLPDY 927 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKI----------------------------------K 699 +++ ++ D V + + + Sbjct: 928 ERAKALSFMDWVGPALVRHRDCTALNEGRSSVHSLPPEIHEHPSCWKLDVIPKSQFMLQE 987 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 ++ + +W E E+EE ++L P+ P K ++E + Sbjct: 988 GEDAEEEIDWQENVKEGLPVEKESPEKEEVAERLSWRYSYPEAAVLPSKQSVSEIKRMFE 1047 Query: 760 STIDTKG------------KTNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFI 805 + + + G +H ++Q I P K + Sbjct: 1048 ISDEASSDRMVRKIQKPVFRRPKFLQSKQLTPAEIGTAMHMVMQHISFSECPNEKSLQSL 1107 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK----- 859 + L + I + ++ EV S + + Sbjct: 1108 LDDLKQKELLTEEQAEAIDQNKILAFFRSDTGQRVLNAHELHREVPFSMAVPVQEIDASA 1167 Query: 860 -----KDIIISGRIDQISISQQNIFIFEYKTH----HHVPQEIEH---IPYTHIAQLSIY 907 + +++ G ID I + + + +YKT + E + + Q+ +Y Sbjct: 1168 SADESETVLVQGIIDLIFRDEHGLVLLDYKTDTIDERYKGGYDEASPILLERYRVQIGLY 1227 Query: 908 EKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938 K ++ + L + + + + Sbjct: 1228 TKAIERIWKETVNERYLYFFDVARELKVEKE 1258 >gi|291525355|emb|CBK90942.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale DSM 17629] Length = 1220 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 139/1016 (13%), Positives = 301/1016 (29%), Gaps = 126/1016 (12%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + P +++ ++L + +Q+ + Sbjct: 233 TMAKDLASATPGLEKYALTLSEDIALF---DGMADVTGYVGMQEFLNKISFGR-----IA 284 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 +K + + + + +K+ + + L+ Sbjct: 285 VIRKFDGDEKKKERVKSMRDATKKKVDGIKQKYFGMSIELMYEQLERQRPFVKELIRLSL 344 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--VSAWIRYKIDQEINHILIDEVQDTS 189 E K + V DF D+ +L + + I+IDE QD++ Sbjct: 345 EFYDAMEAVKTRKRVFDFSDIEHFALRILVDEQTLEPTETAREFSKHFEEIMIDEYQDSN 404 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q +++ +++ + H +F VGD KQSIY F A P+ + + Sbjct: 405 QVQEDILTAISRE-------HQGVGNMFMVGDVKQSIYRFRMARPELFMEKYNTYTSD-- 455 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGT 307 I+L +FRS ++L + +F A + D + +S + Sbjct: 456 --DSAHQRIDLHKNFRSRNEVLDFTNDIFYKIMAADLGNVQYDDDAALYPGASYPKETMR 513 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN-- 365 +L D + E I A IA I +++ + Sbjct: 514 PELLLVDYKDEDLSEIIEDED----------GDKVQIEALLIANRIRSLMENGMVTDKKT 563 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 G+ R +Q +DI++L R + D I I+ ++++ Sbjct: 564 GQLRAVQYRDIVILSRS---VATWGNTVAAVLKDCDIPAHVESNTGYFSSYEIQVILSML 620 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---ISKFQ 482 R + + D+ +L SP+ ++++ +I + + A K + Sbjct: 621 RILDNPLQDIPMAAVLASPIVGMDDEELAQIRSAFKGVSFAQAALSAMAGENGYEDEKLK 680 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 L H+ ++L R G +D + E+ Sbjct: 681 AFALVFERLRGAVADTPIHELLYMMLDETGFYRYASAMPAGKRRRQNIDMLIEMAAAYEK 740 Query: 542 NSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 SY L + ++ + N + VRIMT+H +KGLE PVVF+ G Sbjct: 741 TSYKGLFHFVRYIDIQQKYEIDYGEADTAGENDDVVRIMTIHKSKGLEFPVVFVSGLGKG 800 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + + I L P++K + I +++ +K+ E R+LYV +T Sbjct: 801 FNTQDTKSDLVIHEKLGLGLVEKTKSPRTKRPSLIRNEIESRIKRENLGEELRVLYVALT 860 Query: 657 RASDQLIICKHSNTSNEK------------------KSNQRTWYDMVYDSFHNDERVKKI 698 RA +++I+ + + + + + D V + + + Sbjct: 861 RAKEKIILTGGLSNAQKSFEKYRGNVNANQPISFGQREGAGCYLDWVIPAMLSYPDKYTV 920 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--LFSPIKNDINEPYI 756 ++ A + + + L + +++ ++ +DI + Sbjct: 921 STVDATEFAARTAMDMAANDISKAQLIGHISAADETKAKELAEEFDFEYAYASDITKKSK 980 Query: 757 LNPSTIDTKGKTNLESLLSDNQ-------------------------------------- 778 + S + Sbjct: 981 YSVSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASNESKELKNAVG 1040 Query: 779 ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN-----------AKLWPAKEYKNL 824 RG +H++++ + + + Sbjct: 1041 VNQGALRGTAVHRVMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLKKGLITDDMYRLTR 1100 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 I + + + + D ++ + +++ G ID + I + +YK Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVMDYEGVLVQGIIDVFWLENDKIVLLDYK 1160 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVC--LLIY-VSEPKVFII 935 T + + + QL +Y L + KS+ LIY + +I Sbjct: 1161 TDRVNAA--KELIDRYSTQLKLYADALGRIFSTDGKSIQADERLIYSFRLQQTIVI 1214 >gi|153812830|ref|ZP_01965498.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174] gi|149831042|gb|EDM86131.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174] Length = 1233 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 150/1038 (14%), Positives = 326/1038 (31%), Gaps = 132/1038 (12%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +ES + + L + Y + + +L+ A+T + E Sbjct: 219 AADESIVQVRELLSRAAAICREESGPYFYEAALDDDILLLRAAETAVKERDYNGFSELLK 278 Query: 68 LLSSFFLTQKFTP----QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 L+ K +K I +++ + L +L + + + Sbjct: 279 NHKYARLSTKKDLSVDEEKKIQVKDLRDSAKGLWNELTEKYFNQTEEMILEYLQYCRRPM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEINH 179 + + + K++ +LDF D+ D+L ++ + +++ + Sbjct: 339 EGLAEVTLQYKDAFADRKREQNILDFTDMEHFALDILMHKEGDTITPSAAAWELSARYDE 398 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QD++L+Q + + + +F VGD KQSIY F A P+ + Sbjct: 399 VMVDEYQDSNLVQEMITNLVA-------GWADKRKNIFMVGDVKQSIYRFRLARPELFME 451 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRH 297 + + I+L +FRS +L+ V+ +F E+ G++ + + Sbjct: 452 KYHSYS----LEDSEEQRIDLHKNFRSRGTVLSSVNYLFRQIMGEDLGGITYEDENALYT 507 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM- 356 +S + + +V+ + ++ + A IA I + Sbjct: 508 GASFPERADGKEPETEVLLIEKDGEE---------LEEQGNQTVQELEALAIAQRIQKLV 558 Query: 357 -IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 I +G R DI++L+R + + I V R Sbjct: 559 GIEEVLDKDSGTYRKAGYGDIVILLRT---SAGWAEPFSQVLASKGIPVYTASRTGYFAA 615 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------- 467 + L+ R + D+ +L S + + ++ I ++ + Sbjct: 616 QEVVTLLNYLRICDNPMQDIPLTGVLHSAIGGCNTQELAIIRSKCPDGMLYESLLAFRER 675 Query: 468 --EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNE 524 + + K H I+ + E+ +A + H+ IL + G + Sbjct: 676 KTDDRDEEELVLREKISHFIELLEEMRDLAVYTPVHELIQYILRKTGYGDYVRVIPGGAQ 735 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHT 579 L + + E+ SY L + +E + A + V+IMT+H Sbjct: 736 RGANLHMLVEKAMEYEKTSYRGLFNFVRYIEKLQKYEVDFGEVNLADAGNGAVQIMTIHK 795 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 +KGLE P+VF G Q + I P + + + + + + L Sbjct: 796 SKGLEFPIVFAAGMGKQFNFQDINSRFLIHPDMGFGVDVILPEKRLILSTVHKQIIRRQL 855 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRT 680 K+ + E R+LYV +TRA ++LII + + R Sbjct: 856 KRESLGEELRVLYVALTRAKEKLIITGTIAKLADVLQAVSWQMGRRETLLPIGTRGEARN 915 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI---------- 730 ++ + + E + + I + E + + E + Sbjct: 916 YWSFILPALARHEAMLPLFREYGIADRQIQVCEMEHAEFKVQKITAAELVQGEILGQTDS 975 Query: 731 -----------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES- 772 +++ + P + + P ++ S + + E Sbjct: 976 QMQEKLLKEWDSRKIYDEEIHEILTERFAFRYPFEYLKDLPVKVSVSELKKRSWRGEEEK 1035 Query: 773 --------------------LLSDNQTFNRGLIIHKLLQVIFTLPEHK--RKNFITSYCT 810 + + RG H+L++ + + T Sbjct: 1036 EESLFYEPDIQEIIPTFVSGEKEEYRGAARGTAYHRLMECLDYTHAEDVHQIQKQIRMLT 1095 Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS----YSEVSVSGKINC--------P 858 + K+ P + + I +++ + + Y E Sbjct: 1096 DSRKMSPEEAQCIRIADILAFVDSKLGQRMKTAAEQNALYREQPFVIAQKMNQIEAAWNG 1155 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 ++ +++ G ID I I + +YKT P + + + QL Y L+ K Sbjct: 1156 EETVLVQGIIDAYFIEDDEIVLVDYKTDKVSPGGEQDLIDLYHIQLEDYAAALERMLQKK 1215 Query: 919 SLVCLLIYVSEPKVFIIP 936 + + K+ + Sbjct: 1216 VKETYIYSFTLRKMIPLS 1233 >gi|302385434|ref|YP_003821256.1| recombination helicase AddA [Clostridium saccharolyticum WM1] gi|302196062|gb|ADL03633.1| recombination helicase AddA [Clostridium saccharolyticum WM1] Length = 1229 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 161/987 (16%), Positives = 320/987 (32%), Gaps = 124/987 (12%) Query: 44 PTILKKAQTLQQASQTQCIEE-----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 L+ L A + + E F L+S + +K +T I + Sbjct: 252 AHDLQMLDRLYLAENYEALNEQLKNVSFDRLASIRSKEIDGEKKAFVT-GIRDRVKKAVG 310 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 KL + + + L+LA Y + K++ ++DF DL + Sbjct: 311 KLLEFYCFESPKEVLSDIRGSRDAVTTLLSLAGEYGDKYRDKKREKNLVDFNDLEHYALE 370 Query: 159 LLKKRDVS----AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 +L ++ + ++ ++ IL+DE QD++ +Q +I S++ + Sbjct: 371 ILLDKEEGKTVTTQVADELSRQYEEILVDEYQDSNDVQEALINSISRE-------RFGTP 423 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 +F VGD KQSIY F A P+ L + K+ IEL +FRS ++L + Sbjct: 424 NVFMVGDVKQSIYQFRLARPQLFLEKYDSYSVD----EGKYQKIELHQNFRSRDEVLKGI 479 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 ++VF + + + G + D Sbjct: 480 NEVFYQIMTR---NLGDIPYTKDAALHPGAEFLKADGRLGEKPELLMIHGSGNLIKQLDD 536 Query: 335 SLPQESSASILARRIAYTISNM--------IGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386 + +S + A+ IA+ I + + + G RV + D+++L+R Sbjct: 537 DGAECTSREMEAKTIAWKIKELTDPVKGLLVWDKGLEGKGGYRVAEYGDMVILLRSLSGW 596 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 + + I + ++ ++++ I + D+ +LKSP+ Sbjct: 597 A---EDFVSVLMNEGIPAYAERKTGYFTAPEVETVLSMLNIIDNPMQDIPLAAVLKSPMG 653 Query: 447 NFSEDDIFKICT------QRHETETVYEYIQKFANCGI-----------SKFQHVIKYIH 489 +++++ + ++ + +Y Q + K + + Sbjct: 654 RVTDEEMAHLMAVWKKTAKKGQDRGLYGAWQHYRKEYEGGGDPEYPELFKKLEDFNSMLS 713 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 + + S H+ + G L + E+ SY+ L Sbjct: 714 IYREKSSYLSIHELLFDLYEGTGYYDYISAMPAGEVRRANLSMLVEKASAYEKTSYTGLF 773 Query: 549 ELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 I +E + + N VR+M++H +KGLE PVVFL G + Sbjct: 774 HFIRYIENLKKYDTDFGEASLAGEDNTVRVMSIHKSKGLEFPVVFLAGMGKKFNKQDAYG 833 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 K+ I P L + K+ L + ++ E R+LYV MTRA ++L++ Sbjct: 834 KILIDPDLGIGTDYLDLERRLKAPTLKKHALRRKMELGAMGEELRVLYVAMTRAKEKLVM 893 Query: 665 CKHSNTSNEK------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 ++K S+ ++ D + S + +I + Sbjct: 894 TGLDRYLDKKLERFAEIMRVEGQIPFTILSSADSYLDWMLMSLSGKYSLSQILSEEGADT 953 Query: 707 DEWIAYEWSTHHPENTPLEREETI-----------------KQLMDEQKIPKKLFSPIKN 749 I E S +ER+ ++ E K + P Sbjct: 954 GSLIVKELSVPDLVGGEMERQAEKKLTKDALLSLDTERSYDQEFGAELKAAFEYRYPYLA 1013 Query: 750 DINEPYILNPSTIDTKGK----------------TNLESLLSDNQTFNRGLIIHKLLQVI 793 D + S + +G+ E RG H+ L+++ Sbjct: 1014 DTRLHTKVTVSELKKQGQFTDEEESGFLPAIPAFLREEGKKEKTGGAFRGTAYHRALELL 1073 Query: 794 FTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSI-TRLLENPMMTTAMSCDS----Y 846 + + + + + L + L +P+ T + Sbjct: 1074 DFGMVTT-GEALRNALEGFRKDRRMDEESLSQLSEHVLLSFLTSPLGTRLAAAQREGRLK 1132 Query: 847 SEVSVSGKINCP-------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899 E I + I+I G ID + + + +YKT P E + + Sbjct: 1133 KEQQFVVGIPARDMDAGDSDERILIQGIIDAYMEEEDGLVLLDYKTDFIRPGEEKVLVNR 1192 Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIY 926 + Q+ Y++ L+ K + +IY Sbjct: 1193 YQTQMDYYQRALEQM-TGKRVREKIIY 1218 >gi|325261823|ref|ZP_08128561.1| ATP-dependent nuclease subunit A [Clostridium sp. D5] gi|324033277|gb|EGB94554.1| ATP-dependent nuclease subunit A [Clostridium sp. D5] Length = 1263 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 140/986 (14%), Positives = 302/986 (30%), Gaps = 130/986 (13%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS------- 103 L+ + + E + + + + + E + L+EK+KK Sbjct: 288 AALENLVRQETFEGMYQSVQGIAWKRLSAKKDESVDVEKRDQVKALREKVKKMVKDITGM 347 Query: 104 --QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 +E +I + + L K + K+ ++DF D+ +L Sbjct: 348 YFYEEPEEILKDMKESAVS--MQVLIDLVKQFGEAFSGKKQSKNMIDFNDMEQFALRILT 405 Query: 162 KRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 + + + + ++IDE QD++LIQ ++ +F Sbjct: 406 VEEDGKLVPSLSAAEYQDQFLEVMIDEYQDSNLIQEAIL-------TSVSTVSRGRNNIF 458 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F + P+ + + + I+L +FRS ++L V+ + Sbjct: 459 MVGDVKQSIYRFRLSRPELFMEKYDTYSQE----DSDRQRIDLHRNFRSRDEVLGSVNFI 514 Query: 278 FSIPENA--QGLSEDSTTTIRHRSSR---------------------IGQVGTVQLWEQV 314 F G+ D + +S + + Sbjct: 515 FEQIMRKELGGILYDEQAALYPGASYEPQLDEQGKSINQAELILVDTSDDHEAGESSQTG 574 Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQ 372 + + + + + AR +A I ++ + G R + Sbjct: 575 EDKAADAGAEEGRTTETQAARPSAGTGREREARAVARRIKELLKYGRVLDKASGTYRAPR 634 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KD+++L R K + + + I R + + L+ R + + Sbjct: 635 YKDMVILTRSIKGWA---DVFAAVLGEEGIPAYAGSREGYFETYEVSVLLDYLRILDNFM 691 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG------ISKFQHVIK 486 +L +L SP + + I YE +QK+A+ + ++ Sbjct: 692 QELPLTAVLTSPFAGLNVQQLADIRNAFP-GIPFYEAVQKYADAAEGGGVLQRLLREFLQ 750 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYS 545 + + + + H+ I+ G + ++ + E SY Sbjct: 751 ELEHFREMVPYTAIHELLWHIIEDTGYGLYIASMPGGAQREANVEMLVEKASAFEGTSYK 810 Query: 546 SLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + +EQ + VRIM++H +KGLE P+VF+ G Q + Sbjct: 811 GLFNFVRYIEQLKKYDVDYGEANIADEQSDTVRIMSIHKSKGLEFPIVFVCGMGKQFNTQ 870 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + I P +++ + + + + + E R+LYV +TRA + Sbjct: 871 DTKGSIVIHPEWGVGIDAIDLEKRTRIPTILKKVIQEEITRENLGEELRVLYVALTRAKE 930 Query: 661 QLIICKH------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 +LI+ + + + +Y + + D + I E Sbjct: 931 KLIMTGELPHALEVLEQNGAGQTTGGRKEPLPYYVLSGARTYLDWLLPLIPRLTEQIPLE 990 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPK---------------KLFSPIKNDINE 753 + + T ++ E++ + + E + + P + + Sbjct: 991 VLVADCFAEEAAETAGQQAESLARDVLEHWNTENIYDKELRESLPGQLEYKYPYEQEGKL 1050 Query: 754 PYILNPSTIDTKG-------------------KTNLESLLSDNQTFNRGLIIHKLLQVIF 794 S + + + +RG HKLL+++ Sbjct: 1051 KLKFTVSELKKRAYLSEESGEELYEEPEVVPLLPEFLKEEIELTGASRGSAYHKLLELLD 1110 Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKN--LLLSITRLLENPMMTTAMSCD----SYSE 848 ++ A+ + + + I L E Sbjct: 1111 FSVQYDEIALEKEIVRLQAEGKLSDDMAECIRIRDILAFLHCESGQRMHRAAQKQLLKKE 1170 Query: 849 VSVSGKINCPK--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900 ++ + + I++ G ID + + + +YKT + + + Sbjct: 1171 QPFVLGVDAREIYPGEDSAETILVQGIIDVYFEEDEELVVLDYKTDKV--RTARDLQEKY 1228 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIY 926 +QL Y + L+ K + +IY Sbjct: 1229 HSQLDYYAQALEQL-TEKKVKEKIIY 1253 >gi|167038872|ref|YP_001661857.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514] gi|300913540|ref|ZP_07130857.1| recombination helicase AddA [Thermoanaerobacter sp. X561] gi|307723445|ref|YP_003903196.1| recombination helicase AddA [Thermoanaerobacter sp. X513] gi|251764574|sp|B0K213|ADDA_THEPX RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|166853112|gb|ABY91521.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514] gi|300890225|gb|EFK85370.1| recombination helicase AddA [Thermoanaerobacter sp. X561] gi|307580506|gb|ADN53905.1| recombination helicase AddA [Thermoanaerobacter sp. X513] Length = 1233 Score = 376 bits (965), Expect = e-101, Method: Composition-based stats. Identities = 160/1002 (15%), Positives = 350/1002 (34%), Gaps = 131/1002 (13%) Query: 36 SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95 +E ++A ++Q Q E + + + + K+ + + ++ + Sbjct: 244 EAGLEGYFHAFQREAYEIEQLLQYDNWNEFKNHIQAIEFERLPNAGKD-ANKNVKEEVSN 302 Query: 96 LKEKLKKSQ---------DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++K+K D +I+D + A L + Y+E K++ + Sbjct: 303 IRKKVKDKIKEIKEKFFSDSVEEIKDEIKAL--YPIMEALADLILLFDKKYKEKKREKGI 360 Query: 147 LDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +DF D+ +L + D + + ++ I +DE QD++LIQ E++ + Sbjct: 361 IDFNDIEHFALQILTEIDEEGDVNPSEVALHYREKFEEIFVDEYQDSNLIQEEILSIIAR 420 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + +P F VGD KQSIY F A P + + G+K I L Sbjct: 421 E---------NPPNRFMVGDVKQSIYRFRQANPYIFFEKYNSYS---LDTGEKNQKILLY 468 Query: 262 LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLWEQ 313 +FRS +++ ++ +F N ++ + + + G V+L Sbjct: 469 KNFRSRIEVIEAINYIFKKIMSKNIGEVNYTEEEKLNYGAEYEIPPEDSVTGGAVELHLI 528 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQE----SSASILARRIAYTISNMIGTDTIFSNGK-- 367 + + + ++E D +E + AR +A I + + + + Sbjct: 529 EKQKVEEEVEEKEEEKNEEKDFEEEEEDLIDDIQVEARVVAERIKQLFSQNFMVYDKNIK 588 Query: 368 -KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 R + +DI+VL+R T + I + D IK +++L + Sbjct: 589 SYRAVDYRDIVVLLRA---TDRWAPVFLEELTQAGIPAFADTGTGYFDTTEIKTIISLLQ 645 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHV 484 I + D+ + +L+SP+F+F+E+++ + + E + K ++ Sbjct: 646 VIDNPMQDIPLLAVLRSPIFSFTEEELIDLRLEDMEKTIYEAIKKASQREDELGEKAKNF 705 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543 + + + A + +F + + G + L + E+ S Sbjct: 706 LDTLKKWQEKAVYMPVDEFLWYLYKDTGYYSYVAAMPQGVQRQANLRILFERAKQYEETS 765 Query: 544 YSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L I+ + + N VRIM++H +KGLE PVV + G Q Sbjct: 766 FKGLFNFINFINRLKVSSGDMGSAKIVGENEKVVRIMSIHKSKGLEFPVVIVAGLGKQFN 825 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + +K+ L P + + + + + +K E R+LYV +TRA Sbjct: 826 TKDLYQKILYHHFLGLGPEFVDFRRRISYPSIVKEAIKYKIKLEGLSEEMRVLYVALTRA 885 Query: 659 SDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKL 700 ++LI+ + + +++ D + + + ++ ++ Sbjct: 886 KEKLILVGSARDIKKNVRKWANAAILQEKVSEYDILNGKSYMDWIGAAVIRHKDLEPLRE 945 Query: 701 TNSI---NKDEWIAYEWSTHHPENTPLERE-------------------------ETIKQ 732 + +++ +E + ++ LE+E E ++ Sbjct: 946 FAGVSLSEEEDASKWEVKLWNKKDVLLEKEKNDKVDVVERLRSLDLDAHYSEFYKEVERR 1005 Query: 733 LMDEQKIPKKLFSPIKNDINEPYIL-----------NPSTIDTKGKTNLESLLSDNQTFN 781 L K + P K + E + + + Sbjct: 1006 LNYVYPYEKACYLPAKLSVTEVKRILNAEVVDEDTTSIFEREVLKTPIFLEKKKGLTAAE 1065 Query: 782 RGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMM 837 +G+ +H ++Q + L K I + + ++ K + + I + + Sbjct: 1066 KGIAMHLVMQKLDLDKDLSLEGIKEQIKDMVDRE--ILTEEQAKEVNIHKIEGFFKTSLG 1123 Query: 838 TTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEYKT 885 + S + EV K+ + I + G ID + + + +YKT Sbjct: 1124 ERMLSSKNVKREVPFHIKLSSREIYKDLPEEYENEFIQVQGIIDCFFEEEDGLVLIDYKT 1183 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + ++E I + Q+ +Y K L++ K + IY+ Sbjct: 1184 DYVQEGKVEEIKERYKVQIELYSKALENI-TGKKVKEKYIYL 1224 >gi|255282638|ref|ZP_05347193.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469] gi|255266931|gb|EET60136.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469] Length = 1237 Score = 376 bits (965), Expect = e-101, Method: Composition-based stats. Identities = 168/1043 (16%), Positives = 317/1043 (30%), Gaps = 144/1043 (13%) Query: 2 KNRFGLSLNE-SYELIYKDLWPLP----YFQVSDINKYVSLSMETGNP--------TILK 48 ++ + LS E + L L + I + ++++ P L+ Sbjct: 204 RDAYDLSAEEFDETAWVRQLQQLSTQILEEVRAQIEEALAIAESPDGPYPYCDALEADLQ 263 Query: 49 KAQTLQQASQTQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQ 104 A L +S L+ K +K + + + E L+ Sbjct: 264 LADALLAEKTYTGRCAAMQQISWTRLSAKKDASVSEEKKQQVKNLRESYKKAVEDLRTEF 323 Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 A Y K K ++DF+DL +L R Sbjct: 324 YSSPAETAAAAMRDCAPVVAGITEFVSRFAARYAAEKVKKNMMDFDDLEHFALQILVTRR 383 Query: 165 V----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + + ILIDE QD++L+Q ++ S+++ HS LF VG Sbjct: 384 DGKLCPTPVAEEFAAHYEEILIDEYQDSNLVQELILTSISKK-------HSGGHNLFMVG 436 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D KQSIY F A P+ + R I+L +FRS + +LT V+ +F Sbjct: 437 DVKQSIYRFRLARPELFTEKYDSY--RTGEPQAAQRRIDLHRNFRSRSQVLTFVNFLFEQ 494 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + + G ++ P+ES Sbjct: 495 IMEKHLGNVEYDDAAALYPGAEFAPG-------DDDAFRDTEVLLIDAEAEEEKEKPEES 547 Query: 341 SASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 + + A +A I+ ++G + ++ N G R + +DI++L+R + Sbjct: 548 ARELEAYAVAQRIAGIVGKELVWDNALGAYRRAEYRDIVILLRT---IQGWAEPFAKVLT 604 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 + I R ++ +++L R I + D+ +L SP+ S ++ I + Sbjct: 605 EQDIPAHTGSRTGYFSTTEVQTVLSLLRVIDNPRQDIPLTAVLHSPIVWLSAGELAAIRS 664 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + A + E +A + H+ I Sbjct: 665 AHP------QMPFYEACMQEPSLADFFAMLAEFRRMAAYTPIHELLWYIFERTGYAAYAA 718 Query: 519 S-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVR 573 + G++ LD + + EQ SY L + +E N VR Sbjct: 719 AMPGGSQRKANLDMLVEKAIAYEQGSYRGLYNFVRYIENLHKYDVDFGEAASGEQENAVR 778 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+++H +KGLE P+VF+ G Q+ K + + L + +S + Sbjct: 779 ILSIHKSKGLEFPIVFVCGMGKQMNQSDARKSVVLHADLGIGCDRTDPKLRIRSATLLKR 838 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------------------- 674 + ++ + E R+LYV +TRA ++LI+ +K Sbjct: 839 FMKRYTVQENLGEELRVLYVALTRAKEKLILTGTVTKLADKLQKWGQVCRREGTVLPFTL 898 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY---------------------- 712 +++ T++D + S + + + +D Sbjct: 899 RAHASTYWDWLIPSLLRNRCFAPLAEEYGVYQDHSHPLFSREIFCRVTYLPVRELTGAEK 958 Query: 713 -----EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG- 766 + T + + + + P ++ S + Sbjct: 959 QRQKKLYMTREKLLSLSPEAVFDAKAAQQLAENLSFCYAYGGEEKIPAKVSVSELKKYAQ 1018 Query: 767 -------------------KTNLESLLSDNQTFNRGLIIHKLLQVIF-----TLPEHKRK 802 S+ RG I HKL++ + K Sbjct: 1019 FDELEDGELLFEEPAPVPLIPEFLQEKSEVSGAARGTIYHKLMECLDFTLFADTSVQKDT 1078 Query: 803 NFITSYCT------KNAKLWPAKEYKNLLL-SITRLLENPMMTTAMSCDSY----SEVSV 851 + + + A A+E + + + L++P+ E Sbjct: 1079 AEMRRFLEAETGRLQRAGHLKAEEAELISEKKLLAFLKHPLAQRMAQAAVRGQLFREQQF 1138 Query: 852 SGKINCPK--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903 + ++I G ID I I + +YKT +E + + Q Sbjct: 1139 VLSVPAGDIRREWQAGGPVLIQGIIDAYFIEDGQIVLVDYKTDFVKFEEASSLYRKYAVQ 1198 Query: 904 LSIYEKILKDSYPNKSLVCLLIY 926 L YE L + + LIY Sbjct: 1199 LDYYEIALTRL-AHLPVSEKLIY 1220 >gi|188589987|ref|YP_001919480.1| recombination helicase AddA [Clostridium botulinum E3 str. Alaska E43] gi|251764510|sp|B2UX57|ADDA_CLOBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|188500268|gb|ACD53404.1| ATP-dependent nuclease subunit A [Clostridium botulinum E3 str. Alaska E43] Length = 1244 Score = 376 bits (965), Expect = e-101, Method: Composition-based stats. Identities = 148/949 (15%), Positives = 298/949 (31%), Gaps = 126/949 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 ++I + L + + N K + L + KK+ + Sbjct: 303 KQIRDQVKKKISALIEGTFIATPDKMLDNIIKSYPYINQLTELTSEFIDRFNAKKKEKNI 362 Query: 147 LDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 LDF DL +L + + V + I K +L+DE QD++ +Q +I ++ Sbjct: 363 LDFNDLEHLCLKILIEDNEENQIVPSTIAQKFKDYFEEVLVDEYQDSNNVQEAIIELVSR 422 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 +S +F VGD KQSIY F A+P+ + + I+L Sbjct: 423 K-------NSDNPNVFMVGDVKQSIYKFRQAKPELFIDKYNSYSLD----KGINRKIQLY 471 Query: 262 LSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQVGTVQLW--EQVVSQ 317 +FRS +++ V+ +F + L + +S + + V Sbjct: 472 KNFRSREEVINGVNYIFKSVMSKTVGELEYTDVEALNLGASYPKKKNVDDIIGGPIEVHI 531 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRV 370 D N ++ + + ++ AR I I+++I G+ R Sbjct: 532 LDRSDNKEENDESKLQAEEEEIGDVNLEARIIVKRINDLISKKDGSKFKVLDKDTGEYRD 591 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ KDI++L+R K+ + I V + + + I+ +M+L + I + Sbjct: 592 LKYKDIVILLRATKNWS---EVLLDELGLAGIPVYADTGSGYFESIEIRTIMSLLKVIDN 648 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ-----KFANCGISKFQHVI 485 D+ + +L SP+ S +++ I E I+ + K ++++ Sbjct: 649 PMQDVPMLSLLISPIIGLSAEELTDIRLIDKEKYFYENIIKISTEKLISEELQEKCEYIL 708 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSY 544 I + + + +F + G L + + S+ Sbjct: 709 SSIDKWRRKSIYMPIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRARQFSETSF 768 Query: 545 SSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L I+ + + N + VRIM++H +KGLE PVVFL G Sbjct: 769 KGLFNFINFINKLTKSSGDMGSAKILGENEDVVRIMSIHKSKGLEFPVVFLAGCGKNFNL 828 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K+ L P ++ + K +K T E R+LYV TRA Sbjct: 829 MDLNNKILYHEELGLGPEYINLENRTSITTLPKEAIKKRMKLETLSEEMRVLYVAFTRAK 888 Query: 660 DQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDS------------ 688 ++LII + + +++ D + + Sbjct: 889 EKLIITGAVRNAEKSIEKWINSAVLDKDVILPYEISKGKSYLDWIGMALCKHKDGKILRK 948 Query: 689 --------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 +D + KI + N D + + + + ++ + + + + Sbjct: 949 KLGFSSEMCKDDLSMWKISIWNKYELDMYDELDENQEELDVKISILDKDVNKKVKSEVYR 1008 Query: 741 K-KLFSPIKNDINEPYILNPSTIDTKGK------------------------TNLESLLS 775 + K ++ S + + Sbjct: 1009 RLGYEYEFKESTKLTSNISVSDLKRRNMNDNIDTLEIFDLEEEDNKNKDVITPKFLQEKK 1068 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLE 833 + RG IH ++ I K + + + I + Sbjct: 1069 GISSAERGTAIHFAMKKIDFSKVGTLKEIKEQLNKLYEEEFILQEEYSSINPYKILSFFK 1128 Query: 834 NPMMTTAM-----SCDSYSEVSVSGKIN-----------CPKKDIIISGRIDQISISQQN 877 + + + Y E+ +I+ + I + G ID Sbjct: 1129 SNLGKKMLDVYNKGGKIYREIPFHTEISSLELDESLPQKYANEKIRLQGIIDCFFKCDDE 1188 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 I + +YKT + + E + +QL Y + + K + +Y Sbjct: 1189 IILLDYKTDYV--ENEEEFKEKYKSQLLYYSEAVFKM-TGKKVNKRYLY 1234 >gi|319646646|ref|ZP_08000875.1| AddA protein [Bacillus sp. BT1B_CT2] gi|317391234|gb|EFV72032.1| AddA protein [Bacillus sp. BT1B_CT2] Length = 1230 Score = 376 bits (965), Expect = e-101, Method: Composition-based stats. Identities = 162/1033 (15%), Positives = 332/1033 (32%), Gaps = 141/1033 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFF 73 I +D+ + + + + L+ + G P L Q + ++ FS L Sbjct: 222 IKEDIALVLEGMRQKLTRALDLTKQPGGPAPRAENFLDDLAQIDRLIQQQDDFSALHELV 281 Query: 74 LT-----------QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 T ++ P+ ++ + EKLK + + +M Sbjct: 282 PTVSFQRLKPCKGDEYDPRLVDEAADLRNSAKKQLEKLKSDYFSRTPEQHLESLREMKPV 341 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEI 177 + L + EAKK+ ++DF DL + +L V + + Sbjct: 342 IQTLVQLVLEYGRRFAEAKKEKAIVDFSDLEHDCLAILSVKNPAGEAVPSEAAKFYRHQF 401 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +L+DE QDT+L+Q +++ + ++ G LF VGD KQSIY F AEP Sbjct: 402 HEVLVDEYQDTNLVQEAILKLVAKEEHEG--------NLFMVGDVKQSIYRFRLAEPLLF 453 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 L + + + +G I+L +FRS +DIL + +F + + Sbjct: 454 LSKYKRFTDDGSGSG---QKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDEQAEL 510 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + E ++ + S + + + + + AR +A I +I Sbjct: 511 KLGASYPPNEATKTELLLIETPSG---------APGEEAEELEAVQLEARAMAGQIRRLI 561 Query: 358 GTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + K R IQ +DI+VL+R P I + I V N + Sbjct: 562 TEKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQIMDEFK----QQGIPVYANLSTGYFE 617 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF- 473 + ++L + I + D+ +L+SP+ E+++ + + + YE ++ + Sbjct: 618 ATEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENEL-SLIRIKDKKAPFYEAMKAYL 676 Query: 474 -----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVID 527 K + + + A+ S + I K G + Sbjct: 677 AAADGDERLSEKLRRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQA 736 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKG 582 L + E S+ L + +E+ RA S + VR+MT+H++KG Sbjct: 737 NLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKG 796 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVF G K + L + + + K L++ Sbjct: 797 LEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLIAMKKKLRRE 856 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYD 683 E R+LYV +TRA ++L + + + ++ +++ D Sbjct: 857 LLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYERFQAKSYLD 916 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739 + + + + I++ + L+ E + + Sbjct: 917 FIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGEERHDRLVQI 976 Query: 740 ------------------PKKLFSPIKNDINEPYILNPSTIDTKGK-------------- 767 P K+ + S + + + Sbjct: 977 QMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYEDEYGDRSLIRPS 1036 Query: 768 -------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPA 818 + RG +H ++Q I + KN ++ + +L Sbjct: 1037 QEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLTRTPE-KNELSRLLDRLVEKELLTE 1095 Query: 819 KEYKNLLL-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC---------PKKDIIISGR 867 + + I + + + + EV + ++ + ++I G Sbjct: 1096 DQRAAIEEDDILAFFDTEIGQKLLGARRVEREVPFNMTLSAKEVYPDLESADEPVLIQGI 1155 Query: 868 IDQISISQQNIFIFEYKTHHH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 ID + ++ ++ +YKT + + Q+ +Y + ++ Sbjct: 1156 IDCLFETEDGFYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQLYARAVETMIKMPLK 1215 Query: 921 VCLLIYVSEPKVF 933 L + V Sbjct: 1216 GRALYFFDGGHVL 1228 >gi|149004237|ref|ZP_01829024.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69] gi|147757787|gb|EDK64800.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69] Length = 1421 Score = 376 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 160/1019 (15%), Positives = 335/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 445 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 504 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 505 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 564 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 565 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 621 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 622 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 670 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 671 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 726 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES + + R + I + Sbjct: 727 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTGTKLTGEMRLVIKEILKLHQE- 777 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 778 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 825 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 826 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 885 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 886 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 945 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 946 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 1005 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 1006 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 1065 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 1066 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 1125 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 1126 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 1185 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ + K + + + I P + PS I + Sbjct: 1186 QSDTIKEALKMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1245 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1246 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1302 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1303 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1362 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1363 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1419 >gi|291527058|emb|CBK92644.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale M104/1] Length = 1220 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 139/1016 (13%), Positives = 300/1016 (29%), Gaps = 126/1016 (12%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + P +++ ++L + +Q+ + Sbjct: 233 TMAKDLASATPGLEKYALTLSEDIALF---DGMADVTGYVGMQEFLNKISFGR-----IA 284 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 +K + + + + +K+ + + L+ Sbjct: 285 VIRKFDGDEKKKERVKSMRDATKKKVDGIKQKYFGMSIELMYEQLERQRPFVKELIRLSL 344 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--VSAWIRYKIDQEINHILIDEVQDTS 189 E K + V DF D+ +L + + I+IDE QD++ Sbjct: 345 EFYDAMEAVKTRKRVFDFSDIEHFALRILVDEQTLEPTETAREFSKHFEEIMIDEYQDSN 404 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q +++ +++ + H +F VGD KQSIY F A P+ + + Sbjct: 405 QVQEDILTAISRE-------HQGVGNMFMVGDVKQSIYRFRMARPELFMEKYNTYTSD-- 455 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGT 307 I+L +FRS ++L + +F A + D + +S + Sbjct: 456 --DSAHQRIDLHKNFRSRNEVLDFTNDIFYKIMAADLGNVQYDDDAALYPGASYPKETMR 513 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN-- 365 +L D + E I A IA I +++ + Sbjct: 514 PELLLVDYKDEDLSEIIEDED----------GDKVQIEALLIANRIRSLMENGMVTDKKT 563 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 G+ R +Q +DI++L R + D I I+ ++++ Sbjct: 564 GQLRAVQYRDIVILSRS---VATWGNTVAAVLKDCDIPAHVESNTGYFSSYEIQVILSML 620 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---ISKFQ 482 R + + D+ +L SP+ ++++ +I + + A K + Sbjct: 621 RILDNPLQDIPMAAVLASPIVGMDDEELAQIRSAFKGVSFAQAALSAMAGENGYEDEKLK 680 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 L H+ ++L R G +D + E+ Sbjct: 681 AFALVFERLRGAVADTPIHELLYMMLDETGFYRYASAMPAGKRRRQNIDMLIEMAAAYEK 740 Query: 542 NSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 SY L + ++ + N + VRIMT+H +KGLE PVVF+ G Sbjct: 741 TSYKGLFHFVRYIDIQQKYEIDYGEADTAGENDDVVRIMTIHKSKGLEFPVVFVSGLGKG 800 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + + I L P++K + I +++ +K+ E R+LYV +T Sbjct: 801 FNTQDTKSDLVIHEKLGLGLVEKTKSPRTKRPSLIRNEIESRIKRENLGEELRVLYVALT 860 Query: 657 RASDQLIICKHSNTSNEK------------------KSNQRTWYDMVYDSFHNDERVKKI 698 RA +++I+ + + + + + D V + + + Sbjct: 861 RAKEKIILTGGLSNAQKSFEKYRGNVNANQPISFGQREGAGCYLDWVIPAMLSYPDKYTV 920 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--LFSPIKNDINEPYI 756 ++ A + + + L + +++ ++ +DI + Sbjct: 921 STVDATEFAARTAMDMAANDISKAQLIGHISAADETKAKELAEEFDFEYAYASDITKKSK 980 Query: 757 LNPSTIDTKGKTNLESLLSDNQ-------------------------------------- 778 + S + Sbjct: 981 YSVSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASNESKELKNAVG 1040 Query: 779 ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN-----------AKLWPAKEYKNL 824 RG +H+ ++ + + + Sbjct: 1041 VNQGALRGTAVHRAMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLKKGLITDDMYRLTR 1100 Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 I + + + + D ++ + +++ G ID + I + +YK Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVMDYEGVLVQGIIDVFWLENDKIVLLDYK 1160 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVC--LLIY-VSEPKVFII 935 T + + + QL +Y L + KS+ LIY + +I Sbjct: 1161 TDRVNAA--KELIDRYSTQLKLYADALGRIFSTDGKSIQADERLIYSFRLQQTIVI 1214 >gi|299822108|ref|ZP_07053994.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601] gi|299815637|gb|EFI82875.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601] Length = 1240 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 170/1036 (16%), Positives = 329/1036 (31%), Gaps = 133/1036 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQ--TQCIEERFSL 68 I D+ + ++ + + E G P I + L+Q E + Sbjct: 226 IEADIRIHLEQALEELRTALKFAEEPGGPDVYLPLIENEKLQLEQLLDDYPLDWEAKKEA 285 Query: 69 LSSFFLTQKFTPQKNI--------ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 +SS + T + T++ + + + + + + KM Sbjct: 286 ISSVKFGRLPTIKNKENYDESLIEQTKQARDGAKKQLKAITEEWFQRDAGNYLADLAKMK 345 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 L + A + K++ VLDF DL +L ++ + I + Sbjct: 346 PDIELLTELVEEFAADFLAEKQRRGVLDFNDLEHLALAILGEKTETTSYEPSEIALEYRH 405 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +LIDE QDT+++Q ++ LT LF VGD KQSIY F AEP Sbjct: 406 KFKEVLIDEYQDTNMVQETILSLLTTPSEA-------AGNLFMVGDVKQSIYRFRLAEPT 458 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTT 293 L + + + N G I+L +FRS ++LT + +F + Q + D Sbjct: 459 LFLDKYKRYRVDGENTGI---RIDLSKNFRSRQNVLTTTNFIFKQLMDTQIAEIDYDEAA 515 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 + ++ Q +V + ++ DS + A IA I Sbjct: 516 ELVLGAAFPETEERYQPEIALVDMKQEERESEE------TDSPQELQKNQAEAMLIARKI 569 Query: 354 SNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 MI + K R IQ +DI++L R I + + I N Sbjct: 570 KKMITEKFQIYDKKMQQYRPIQYRDIVLLSRAMTSATDIEEAMKA----HDIPFYANSNT 625 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVY 467 + I+ ++A+ + I + D+ +L+SP+ SE+ + +I + + + + Sbjct: 626 GYFEATEIRIMLAVLKVIDNPYQDIPLAAVLRSPILGVSEEILGQIRAAKPKGYFYDALL 685 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVI 526 Y Q + + +K + +A S I G + Sbjct: 686 LYQQTTISPEADRIDRFLKQLELWRDLANRESLPKLIAQIYEETHYYDFVGGLPGGKQRQ 745 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581 L + + + E+ +Y L I +E+ + + VR+MT+H +K Sbjct: 746 ANLRALYDRSSQYEKTAYRGLFRFIRFIERMRVRGDDMGTAKTLGEKEDVVRMMTIHASK 805 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVV L T + K + + + + + + Sbjct: 806 GLEFPVVILAGTSRRFNMRDIYSKYLLDKEFGFSARYNDVDKRIVYPTIMQQAIKQKKYR 865 Query: 642 STQEEYNRLLYVGMTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 T E R+LYV +TRA +LII + K + Q + + + + + Sbjct: 866 ETIAEEMRVLYVALTRAEQKLIITGTVADWEKTKTKWATQSSHTGWILPAGVRLQGKTYL 925 Query: 699 KL-------------------TNSINKDEWIAYEWSTHHPENTPLEREETIK-------- 731 + ++ D I E P E + + Sbjct: 926 EWIGSAFARHPEFAKLLDAGQVAALPIDMPIGLEIVASEQLTNPAEAKTSKPVYLDNIQA 985 Query: 732 ------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG------------------- 766 + +++ I L N + S + K Sbjct: 986 GKTVPIESPEKESINSYLEFIYPNQVETQIRAKQSVTEIKRQFSVQDSWSDTKIVEGIQK 1045 Query: 767 ---KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LWPAKEYK 822 +G +H ++Q + E K AK + ++ + Sbjct: 1046 VSLDRPKFLQRKGLSATEKGTAMHTVMQSLPLSHEPDDKELTDFLEELVAKEILSPEQKE 1105 Query: 823 NL-LLSITRLLENPMMTTAMS--CDSYSEVSVSGKINC--------PKKDIIISGRIDQI 871 ++ I + E+ S + ++ ++I G ID + Sbjct: 1106 SITYSEIQAFFRTKLGRLINENLQQVEREIPFSYHLPASVIYPEAETEERVLIQGVIDCM 1165 Query: 872 SISQQNIFIFEYKTHHH----VPQEIEH---IPYTHIAQLSIYEKILKDSYPNKSLV-CL 923 + + +YKT +E + + Q+ +Y+K ++ K + Sbjct: 1166 LEEADGVTLIDYKTDRIGSHFPNGWLEAEPVLKKRYEVQMHLYQKAVEAI-TKKPVKHIY 1224 Query: 924 LIYVSEPKVFIIPQNK 939 L + V + + Sbjct: 1225 LYFFDGAHVCQLETEE 1240 >gi|291549061|emb|CBL25323.1| recombination helicase AddA, Firmicutes type [Ruminococcus torques L2-14] Length = 1239 Score = 375 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 156/1060 (14%), Positives = 323/1060 (30%), Gaps = 171/1060 (16%) Query: 7 LSLNESYEL-IYKDLWPLPYFQVSDINKYVSLSME------------TGNPTILKKAQTL 53 + + E + ++ ++D+ +V ++E + L + + L Sbjct: 201 IDPEKMEEADVVQEAKARVRQNLTDVKGFVQQAIEVCELPAGPYMYGEMLDSDLVQIEQL 260 Query: 54 QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKK--SQDEF 107 ++A E+ S + L+ K P + + + K++ L E LK Sbjct: 261 EKAETFCQQEQIVSNFTWKRLSGKKDPTVDPELKEKAQGLRKQAKKLIEDLKANYFYAPV 320 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--- 164 + + + L + + E K++ +LDF D+ +L + Sbjct: 321 DEWIRDMQEAQTA--MKMLVLLVQAFAEAFSEKKRQRNLLDFSDMEQFALRILTEEKEGK 378 Query: 165 -VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 V + + + + ++IDE QD++L+Q ++ S++ + LF VGD K Sbjct: 379 LVPSAVAQEYQERFEEVMIDEYQDSNLVQETILASVSRESA-------GQNNLFMVGDVK 431 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F + P+ + + + I+L +FRS ++L + +F Sbjct: 432 QSIYRFRLSRPELFMGKYNSYSTQ----ESSRQRIDLDRNFRSRGEVLDSTNYIFRKLMR 487 Query: 284 --AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 + D + +S ++ Q E L + Sbjct: 488 KEFGEIIYDDKAALHLGASFPELP------------DENVFTDQTELLLYNQTGLRSSEA 535 Query: 342 ASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 AR IA + ++ T + G+ R + +D+++L R + + + Sbjct: 536 REEEARMIAQRMKELLNTGVVLDKETGEYRPVHYRDMVILTRS---LQGWAEVFASILAE 592 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 I R + + L+ + + + DL +L SP + ++ I Sbjct: 593 EGIPAYSVSREGYFETYEVSVLLDYLKVLDNARQDLPLTAVLTSPFAGLTAAELSVIRLA 652 Query: 460 RHETETVYEY---------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 +K A K + + + I + + HD Sbjct: 653 YPNQLFYEAVEGFCSLSSEEIPETVDKKQAIQVQEKLRKFFEVLDHFREILPYTAIHDLL 712 Query: 505 TLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YP 558 I+ G + ++ + E SY L + +EQ Sbjct: 713 AEIIDKTGYGLFISAMPGGAQRQANVEMLVEKARAFEGTSYKGLFNFVRYIEQLKKYDVD 772 Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + VRIM++H +KGLE P+VF+ TG Q + + I P + Sbjct: 773 YGEASIIDEQDDTVRIMSIHKSKGLEFPIVFVAGTGKQFNTQDLKGSIVIHPRNGVGIDV 832 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---- 674 ++K+ + + + K E R+LYV MTRA ++LI+ + Sbjct: 833 VDLEMRTKAPTFLKKMIQEKTKLENLAEELRVLYVAMTRAKEKLILTGSLKMGEDGLEPY 892 Query: 675 ------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE-------------------W 709 + + + Y + + + D + + + +++ Sbjct: 893 VNHMTDRESSLSLYQLEGANRYLDWILPALLQEEDLKREDGLCGILKTESEEVQQLPIKV 952 Query: 710 IAYEWSTHHPENTPLEREETIKQ---------------LMDEQKIPKKLFSPIKNDINEP 754 ++ + E I + ++ + P K + Sbjct: 953 RIFDAGEMDFTEDAQRQAEVIAREVLEHWDTTKVYLPGAEEKLEQQMNFLYPYKEEGKMK 1012 Query: 755 YILNPSTIDTKGKTNLESLL--------------------SDNQTFNRGLIIHKLLQVIF 794 S + + E+ +RG HK L++ Sbjct: 1013 LKFTVSELKKRESLQEEAGEELIQEPEIVPLLPHFMEEQKEGLTGASRGSAYHKFLELHD 1072 Query: 795 TLPEHKRKNFITSYCTK-NAKLWPAKEYKNLL-LSITRLLENPMMTTAMSC----DSYSE 848 E+ + A + + I L + E Sbjct: 1073 FSKEYTEELLKEEIELFYQAGRLSKEMVDCIRTKDILAFLNSESGRRMTQAAGNGKLRKE 1132 Query: 849 VSVSGKINC----------------------PKKDIIISGRIDQISISQQNIFIFEYKTH 886 + ++ I+I G ID + I + +YKT Sbjct: 1133 QPFVLGVPASEIYPEIYQDIQKRSQEADENRKEETILIQGIIDVWFEEEDGIVLLDYKTD 1192 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + + AQL Y + L+ K + +IY Sbjct: 1193 RV--RNASQLKELYHAQLDYYAQALEQLL-EKPVKEKIIY 1229 >gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901] gi|123575608|sp|Q3AA35|ADDA_CARHZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|77995703|gb|ABB14602.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901] Length = 1167 Score = 375 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 145/904 (16%), Positives = 318/904 (35%), Gaps = 85/904 (9%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ K+ + E +KK + R + + L + + Y+E K+K+ Sbjct: 294 KDLRDKAKEQFETIKKRYFSWEAGNFREELRTLTSYLDPLVKLVREFSRKYQEEKRKHGF 353 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 DF DL D+LK + + ++ ++ IL+DE QD + +Q E++ ++ D Sbjct: 354 ADFSDLEHWALDILK-----SGVYRELREKYVEILVDEYQDINGLQEEILTYVSRD---- 404 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 + LF VGD KQSIY F A P+ L++ IEL L+FRS Sbjct: 405 ------GQNLFMVGDVKQSIYRFRWARPEIFLKKYEDF--------TDEKKIELSLNFRS 450 Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 +I+ V+ +F + + E + + + Sbjct: 451 REEIIATVNFIFKQIMKKRVAELSYDEKAFLKKGADYLPNANCFAELHLIEGKPE----- 505 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386 E S + ++ AR +A I + + + + + +V + Sbjct: 506 EDINSNGEPEEDLTAVHREARLVAAKILKLKEEGFKVFDRETKEFRPLQYRDIVILSRSL 565 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 + + + I V + I + + + I + D+ +L SP+ Sbjct: 566 SNSSNIWQEELTRAGIPVYVEGAGSFLNSKEILLMTSFLKVIDNPCQDVPLAAVLCSPVA 625 Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDF 503 + ++++++ + E +Y+ ++ + K Q ++ + E +++ S + Sbjct: 626 GLTYEELWQVRKEYPEGL-LYDALKNKSLGKDELSVKSQKFLELLVEFQKLSRQISLAEL 684 Query: 504 FTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562 I + F + G E L + + + + + ++ L Q + Sbjct: 685 VNEIYRKTNLPEIFGAYPGGEVRQANLKLLHDLAVDFAEINGGGIYNFLTFLSQAAESED 744 Query: 563 RAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + + + VR+M+VH +KGLE PVVF+V G + F + + + L P Sbjct: 745 FSPAKLIGEADDVVRVMSVHKSKGLEFPVVFVVGLGKR-FKFDYSNTVFLHSDLGFGPKF 803 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + + + L + +++ T E R+LYV +TRA ++LI+ +K + Sbjct: 804 FDPEKRIRRHSIASQILSERMRRETLAEEMRILYVALTRAREKLILVGTVKNLAKKMAGW 863 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 ++ + + D+ + + + + I + + ++E I+ E Sbjct: 864 QSQTEALKDTLSDGQIARAGNFLDWIGPVVFREGSDLPDCLKVEVHPQQEKIEGEQWELP 923 Query: 739 IPKK------------------------LFSPIKNDINEPYILNPSTIDT---------- 764 + P P ++ S + Sbjct: 924 EVLRVKLLTKTPFTEETDYTGQFRAGLEFNYPGLKIAKLPAKMSVSDLKEVFSTDDVISL 983 Query: 765 -KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + G++ H+ L+ I + T A+ E + Sbjct: 984 EDEDEVFLPGVYFEDGAMLGIVYHEFLRRIDFQGDLSASGLKAQGETLVAEGVLPPESRE 1043 Query: 824 LLL--SITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK---------KDIIISGRIDQI 871 +L I R+ P+ + Y E + + + + I++ G ID + Sbjct: 1044 MLDFTKIARIFATPLGQRILRAREIYPEFPFTLGVKAGEIYPEATGFSEKILVRGVIDLL 1103 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 ++ + FI ++KT + + QL++Y + +++ K L +++ K Sbjct: 1104 ALEEDGFFIVDWKTDRVTGDILNERLKEYAGQLNLYARAVEEITGKKVKEKYLYFINLEK 1163 Query: 932 VFII 935 + Sbjct: 1164 EVRV 1167 >gi|323341189|ref|ZP_08081436.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644] gi|323091383|gb|EFZ34008.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644] Length = 1244 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 158/1026 (15%), Positives = 319/1026 (31%), Gaps = 137/1026 (13%) Query: 25 YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84 S K ++L + G A+ L+ + +++ F+ +S ++ Sbjct: 241 EQDESFFAKQIALFEDEGG-RYENYAKMLEDGADYATLQKTFAEMSYARFPSTKRTDDSL 299 Query: 85 IT------QEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137 +T + I ++ + EK+ + ++ + A Y Sbjct: 300 LTETKANVKLIRDEAKKIFTEKIVPEYFAVSSTDLEQALKQAYRLVKKLSEVVLKFAAAY 359 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 + K+ VL+F DL T +L+K D IR +++ I++DE QDT+ +Q ++ Sbjct: 360 QTEKRSRRVLEFSDLEHYTLSILQKNDD---IRQDLEERYAEIMVDEYQDTNQLQETILT 416 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 ++ SP +F VGD KQSIY F A+P L + R Sbjct: 417 TIA---------RKSPGNMFMVGDVKQSIYGFRLADPGLFLEKYRRYAND----DSDGQR 463 Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 I L +FRS ++ ++ + +FS + + D + E ++ Sbjct: 464 IILAENFRSVKNVASITNLIFSQIMSREVGEMDYDDNAQLVYGSSDYPEKQPTAEILLYF 523 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRI-----------AYTISNMIGTDTIFSN- 365 ++ + +D ++ + I A I ++ + + Sbjct: 524 DKRNETAEKTTGKMRWDMTSEDHESMDADFTIESAAQGQMLATAEKIKQLVDSGFEIYDR 583 Query: 366 --GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 K R I DI VL + + I ++ ++A Sbjct: 584 KQKKMRKISYGDIAVLSGTHGN----HLILSEEFKRLGIPYKVQKSENYFQTTELRIMLA 639 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCG 477 L I + D+ V +L+SP+ +E+++ + + YE Sbjct: 640 LLNVIDNPRQDIPLVAVLRSPIVGLNENELALLRINDRSGDYYQALLKFYEESPGQNQEL 699 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFT 536 K + ++ + +A+ I + G++ L Sbjct: 700 HDKVKKFMEMLERFRTLARQNELATLIWKIYDETHFLEYVSGMPGGSQRAANLHALYERA 759 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVD 592 E+ S+ L + I + + + A+ + V +MT+H +KGLE PVVFLVD Sbjct: 760 AAYEKTSFKGLFQFIRFINKMQDQNEDLASALNEASDDVVSVMTIHGSKGLEFPVVFLVD 819 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 + + K + + ++ + S + + E RLLY Sbjct: 820 ATKRFNTDSLKGKYLLNEKDGVSITCLNRKTRVETVTPMQSYAKEKAARKLCAEQMRLLY 879 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQR-------------------TWYDMVYDSFHNDE 693 V +TRA +L I ++ S + + D + + + + Sbjct: 880 VALTRAEQKLFIVAGYKDEDDALSKWKQAKKSEDLLLSADVRENAVCFMDWIGAALYRER 939 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 K + ++S + E + + K L K +++ Sbjct: 940 NFCKRFDCADDVRPCHYLDKFSAEYEFEKISFDELSKNADNQPLDLRKWLKDQAKEELDA 999 Query: 754 P------------------------------------------YILNPSTIDTKGKTNLE 771 L+PS + + Sbjct: 1000 DDADFINKVLTYRYEHEGLVKTAAYQSVSEIKSAFADPDEKVMSKLDPSENEEEKANRFV 1059 Query: 772 SLLSDNQ---------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 S + + G +H +++ + + + +E Sbjct: 1060 SKMELPKFMVHEEKISGAAIGSAVHLVMEKLDLTKKPSESSVKEKISKLVEDGILNEEVA 1119 Query: 823 NLLL--SITRLLENPMMTTAMSCD--SYSEVSVSGKINC--------PKKDIIISGRIDQ 870 + I R E + T + EV S I +++ G ID Sbjct: 1120 KRIRISDICRFFETDLGKTILEKHEFVKREVPFSLLIPANEIFVGLSESDPVLVHGIIDG 1179 Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSE 929 + + +F+YKT H + + + + Q+ +Y LK NK + L Sbjct: 1180 YVDDGKKVILFDYKTDHADEENVSEVKKRYAGQIELYSMALKSIL-NKPVDEKYLYLTQL 1238 Query: 930 PKVFII 935 K + Sbjct: 1239 GKAVDL 1244 >gi|299535964|ref|ZP_07049283.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1] gi|298728569|gb|EFI69125.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1] Length = 1239 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 159/1020 (15%), Positives = 333/1020 (32%), Gaps = 119/1020 (11%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74 + + + + + Q + SQ+ +E F ++ Sbjct: 236 SLEEAFMLISEMRTITLLPDGPAPYAETAEVDFAMIQEGIRISQSGTWQELFDYFATVKW 295 Query: 75 -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-------AS 126 T K + ++ E+ + + +E KK ++ + ++ + Sbjct: 296 STLKRVSKDALVNVELQELAKKKREAAKKMMNKIKETYFIRTPARLLEEIRLMAPTITTL 355 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA----WIRYKIDQEINHILI 182 + L + + AK + ++DF DL +L A + + + +L+ Sbjct: 356 VELTTTFSEQFRLAKLERGIIDFSDLEHYALQILTVEIDGALHPSPVALDMKKRFKEVLV 415 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+++Q +++ + K LF VGD KQSIY F AEPK R Sbjct: 416 DEYQDTNMLQETILQLV-------KTGEEQDGNLFMVGDVKQSIYRFRLAEPKL---FMR 465 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSS 300 + + I+L +FRS ++L + VF+ + +S D +++ + Sbjct: 466 KYSEYLESPDATGMRIDLNANFRSRKEVLNATNYVFAQIMGERVGEISYDDNASLKPAAP 525 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + V+L Q + +E L + + AR I I M+ Sbjct: 526 YDEKEIPVELVVLHPPQEEETTEELEELSNEAT-ELEELKKSQYEARFIIDRIRQMMEDG 584 Query: 361 TIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 T + +R ++ DI++L+R + I + D L Sbjct: 585 TTVYDTKTKTERPLKYSDIVILMRSMTWSTD----LVEEFKLAGIPLYAESSKGYFDALE 640 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF---- 473 + ++ + + + + D+ +L++P +E+++ KI + Y+ +++F Sbjct: 641 VMIMLNVLKVVDNPYQDIPLASVLRAPFVGLTENELAKIRLA-DQKVPFYDALRQFIRSE 699 Query: 474 ----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDV 528 K Q + +A+ S D I + G + Sbjct: 700 GHGVQTTTFEKLQRFMLAFENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQAN 759 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGL 583 L + L E+ ++ L + +++ ++ + VR++T+H++KGL Sbjct: 760 LRVLHDRALMYEKTAFRGLFRFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGL 819 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVF+ G + + + L + + Sbjct: 820 EYPVVFVAGMGRPFNKMDFHQPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEM 879 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEK--------------------KSNQRTWYD 683 + E R+LYV MTRA ++LI+ + ++ ++ D Sbjct: 880 RAEEMRVLYVAMTRAKERLILVGSVKNWEKTRDNWQDAQSLPMNAPLQEYLRARANSYLD 939 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE--------------- 728 V + + T+ D+ + ++ E EE Sbjct: 940 WVGPAVARHADFATVASTSYKELDDQSHWWVQAIETKHYSYEIEEAMGDEVQQVLAMQED 999 Query: 729 --------------------TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 T K+ K+L + + + E Y +P T Sbjct: 1000 EDLLAEITTRFQAQYVYQKSTRKRSKTSVSEIKRLENLQRQEEPEFYFASPIKQKTSSIA 1059 Query: 769 NLESLLSDN--QTFNRGLIIHKLLQVIFTLPEHKR---KNFITSYCTKNAKLWPAKEYKN 823 + L + + G +H ++Q + ++F+ + L E K Sbjct: 1060 PRPAFLQEQQLTSAEIGTAVHTVMQHVPQYGFSHINAVRDFVEDLVARQ--LLTEAEGKV 1117 Query: 824 LLLS-ITRLLENPMMTTAM-SCDSYSEVSVSG-KINCPKKDIIISGRIDQISISQ-QNIF 879 + + I E + + E+ + +I+ I+ G ID + + N Sbjct: 1118 VPQAKIYHFFETEIGQRFQRARQIRREMPFTISRIDEDGDAQIVQGIIDCLFEDEYGNWV 1177 Query: 880 IFEYKTHHH------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + +YKT P + I + QL +Y + ++ K +L + Sbjct: 1178 LLDYKTDRIQSHFAQEPALSKEILGRYAVQLRVYSEAIESILHIKVSDKVLFLFDNEQTI 1237 >gi|238923931|ref|YP_002937447.1| DNA helicase II [Eubacterium rectale ATCC 33656] gi|238875606|gb|ACR75313.1| DNA helicase II [Eubacterium rectale ATCC 33656] Length = 1220 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 140/1006 (13%), Positives = 301/1006 (29%), Gaps = 125/1006 (12%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + P +++ ++L + +Q+ + Sbjct: 233 TMAKDLASATPGLEKYALTLSEDIALF---DGMADVTGYVGMQEFLNKISFGR-----IA 284 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 +K + + + + +K+ + + L+ Sbjct: 285 AIRKFDGDEKKKERVKSMRDAAKKKVDGIKQKYFGMSIELMYEQLERQRPFVKELIRLSL 344 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--VSAWIRYKIDQEINHILIDEVQDTS 189 E K K V DF D+ +L + + I+IDE QD++ Sbjct: 345 EFYDAMEAVKIKKRVFDFSDIEHFALRILVDEQTLEPTETAREFSKHFEEIMIDEYQDSN 404 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q +++ +++ + H +F VGD KQSIY F A P+ + + Sbjct: 405 QVQEDILTAISRE-------HQGVGNMFMVGDVKQSIYRFRMARPELFMEKYNTYTSD-- 455 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGT 307 I+L +FRS ++L + +F A + D + +S + Sbjct: 456 --DSAHQRIDLHKNFRSRNEVLDFTNDIFYKIMAADLGNVQYDDDAALYPGASYPKETMR 513 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN-- 365 +L D + E I A IA I +++ + Sbjct: 514 PELLLVDYKDEDLSEIIEDED----------GDKVQIEALLIANRIRSLMENGMVTDKKT 563 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 G+ R +Q +DI++L R + D I I+ ++++ Sbjct: 564 GQLRAVQYRDIVILSRS---VATWGNTVAAVLKDCDIPAHVESNTGYFSSYEIQVILSML 620 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---ISKFQ 482 R + + D+ +L SP+ ++++ +I + + A K + Sbjct: 621 RILDNPLQDIPMAAVLASPIVGMDDEELAQIRSAFKGVSFAQAALSAMAGEDGYEDEKLK 680 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 L H+ ++L R G +D + E+ Sbjct: 681 AFALVFERLRGAVADTPIHELLYMMLDETGFYRYASAMPAGKRRRQNIDMLIEMAAAYEK 740 Query: 542 NSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 SY L + ++ + N + VRIMT+H +KGLE PVVF+ G Sbjct: 741 TSYKGLFHFVRYIDIQQKYEIDYGEADTAGENDDVVRIMTIHKSKGLEFPVVFVSGLGKS 800 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + + I L P++K + I +++ +K+ E R+LYV +T Sbjct: 801 FNTQDTKSDLVIHEKLGLGLVEKTKSPRTKRPSLIRNEIESRIKRENLGEELRVLYVALT 860 Query: 657 RASDQLIICKHSNTSNEK------------------KSNQRTWYDMVYDSFHNDERVKKI 698 RA +++I+ + + + + + D + + + + Sbjct: 861 RAKEKIILTGGLSNAQKSFEKYRGNVNANQPISFGQREGAGCYLDWIIPAMLSYPDKYTV 920 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--LFSPIKNDINEPYI 756 ++ A + + + L + +++ ++ +DI + Sbjct: 921 STVDATEFAARTAMDMAANDISKAQLIGHISAADETKAKELAEEFDFEYVYASDITKKSK 980 Query: 757 LNPSTIDTKGKTNLESLLSDNQ-------------------------------------- 778 + S + Sbjct: 981 YSVSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASNESKEPKNAAG 1040 Query: 779 ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL---------- 825 RG +H++++ + + K + + L Sbjct: 1041 VNQGALRGTAVHRVMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLEKRLITDDMYRLTR 1100 Query: 826 -LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 I + + + + D ++ + +++ G ID + I + +YK Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVMDYEGVLVQGIIDVFWLENDKIVLLDYK 1160 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVC--LLIY 926 T + + + QL +Y L + KS+ LIY Sbjct: 1161 TDRVNAA--KELIDRYSTQLKLYADALGRIFSTDGKSIQADERLIY 1204 >gi|310657539|ref|YP_003935260.1| ATP-dependent nuclease subunit a [Clostridium sticklandii DSM 519] gi|308824317|emb|CBH20355.1| ATP-dependent nuclease, subunit A [Clostridium sticklandii] Length = 1184 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 150/943 (15%), Positives = 308/943 (32%), Gaps = 110/943 (11%) Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------KLKKSQDEFIKI 110 + + + K + + + +++ ++KS + Sbjct: 267 ADFIQAIAEVKHSRFAAISKKMKEELDVALVDEVKAIRDTDIKASGIKAIQKSIKNISQG 326 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 + ++ A + Y E K N VLDF DL LL+ +R Sbjct: 327 FQLEDIKNLYPLMKALYKTVARYDELYSEIKLANSVLDFSDLEHYALRLLENE----AVR 382 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + + +I DE QD++++Q +I ++ + LF VGD KQSIY F Sbjct: 383 EDLRAKYTYIFFDEYQDSNIVQETIISAIKRED-----------NLFLVGDVKQSIYRFR 431 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLS 288 A+P A + I+L +FRS IL ++ +FS E+ ++ Sbjct: 432 LADPTL---FIDKYHSYAKADDRPNKRIDLSNNFRSRPAILEFINDIFSAIMNEDLGEVA 488 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 D + + + V+L + + + + A Sbjct: 489 YDDSAKLIPGMDFPVEKNKVELVVLENHKLEED---------DELAEDADMDNPELEAMY 539 Query: 349 IAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 ++ I ++G + + + I +DI++L+R K + + D +I + Sbjct: 540 VSSRIKELLGKEHYNPKAKEFQKITYRDIVILMRSPKSSI---AAFEKVLKDDRIPCYVD 596 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---E 464 D L +K + L + I + E D + + ++ S + FS D+I +I + + Sbjct: 597 YSASYYDVLEVKLFIDLLKIIDNIEQDEALLAVMNSSIGGFSLDEIIEIRVAYKKGAIYQ 656 Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 + Y+ N K + I + +F ++ + G + Sbjct: 657 ALLSYMADNDNELSIKINTFLDRIKTYRFKEKLQRLDEFLWYLMNDTGYYSDLAAMPGGQ 716 Query: 525 -VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L L+ + N+ + L + +++ +A S + + VRIM++H Sbjct: 717 MRQENLKALLDKASEFQSNTTNGLFNFLHYIDKLLKDKGDTQEAKALSESEDRVRIMSIH 776 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF+ + + + SL P + + + Sbjct: 777 KSKGLEFPVVFVCGLSKGFNKADFKQDIMLHNSLGIGPKYVDLDKNVYRESLPKTAIKIQ 836 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE---KKSNQRTWYDMVYDSFHNDERV 695 K E R+LYV +TRA D LI+ + + S + ++ S + + Sbjct: 837 SNKEMLSEELRILYVALTRAVDTLIMVGSVKDIEKLATRASKSTSTSYLLSQSNYLSWML 896 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPEN----------TPLEREETIKQLMDEQKIPKKLFS 745 + + A + + + ++ ++ + + Sbjct: 897 IALYKHRDASALRDYAVREVIEDDTSYKSSFKLSLVAKYDLLKLSQREREDIDNMEAILR 956 Query: 746 PIKNDINEPYI-------------------------------LNPSTIDTKGK------- 767 K D +E L S +D Sbjct: 957 DYKADSSETLNPEVISVINSRFSYEYPYKEQTMQVSKTSATMLAKSVLDASKISVVIQSM 1016 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLL 826 + RG ++H +Q I + +L ++E +L Sbjct: 1017 PRFMQKVKTFSASQRGTLMHFAMQNINLNQVASPSEIEDQLDMMHVNELLTSEERASLDS 1076 Query: 827 SIT-RLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 + + + S + E S K ++++SG ID + +YK Sbjct: 1077 EMLYEFFCSELGKRMRRSKNVIRENSFM----LKKDEVLVSGVIDSYFEEDGEWVLVDYK 1132 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 T + + + QL +Y++ L+ +K + IY+ Sbjct: 1133 TDYLGTDSKKDKAEMYRPQLELYKEALES-STDKPVKEAYIYL 1174 >gi|307709426|ref|ZP_07645883.1| recombination helicase AddA [Streptococcus mitis SK564] gi|307619740|gb|EFN98859.1| recombination helicase AddA [Streptococcus mitis SK564] Length = 1216 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 161/1031 (15%), Positives = 337/1031 (32%), Gaps = 141/1031 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQ 60 K F + E I + LW L F ++ + + + +Q Sbjct: 228 KADFSSEKEKLTEQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQES 287 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116 + ++L+ K +++ L + + + + ++ D+ Sbjct: 288 DSQAYQAVLARVVAISKEKNGRSLTNASRKADLKPLADAYNEERKTQFAKLGQLADQITI 347 Query: 117 YKMFKS-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + + LAK Y + K++ +F D+ T ++L+ Sbjct: 348 LDYQERYHGDTWELAKTFQAFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---Q 404 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 +R + +++DE QDT+ IQ ++ L S+ F VGD KQSIY Sbjct: 405 VREAYHDRFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYR 453 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F A+P+ + + + Q+ +I L +FRS++++L+ + VF + + Sbjct: 454 FRQADPQIFNEKFQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGE 509 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 + + + + + ++E E+ + R Sbjct: 510 INYDNMHQLVFANSKLTPNPDNKAEFLLYDKDDTGEEEEG--------QAETKLTGEMRL 561 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + K+I +L R ++Y I V + Sbjct: 562 VIKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDG 608 Query: 409 RFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 L ++ ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + Sbjct: 609 EQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHE 668 Query: 468 EYIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + +K N K + + + A+ S +D I + Sbjct: 669 NFYEKLVNAQKLVSSQKGLIQTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFY 728 Query: 514 RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSAN 568 + G L + E++++ L I ++Q A + Sbjct: 729 YDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAIAPP 788 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V +MT+H +KGLE P VF+++ + ++ + + Sbjct: 789 KDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEIILSRQNGLGVKYIAKMDTGAVE 848 Query: 629 NNI------------VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK- 675 ++ + L+ ++ E RLLYV MTRA +L + + + Sbjct: 849 DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESK 908 Query: 676 ------------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 N + W + F D E + Sbjct: 909 EYPAAKNGKLNSNTRLQARNFQDWIWAINKVFAKDNLNFSYSFVGEDQLTREAIGELENN 968 Query: 718 HP----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----- 768 P + ETIK+ ++ K + + + I P + PS I + Sbjct: 969 GPLQDNSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDLE 1028 Query: 769 -------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809 S G H+L+Q + +R + Sbjct: 1029 GVEIAGQGQSVDKKISFDLPDFSSKEKMTGAEIGSATHELMQRMD---LSQRPTLASLTE 1085 Query: 810 TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIII 864 T + L I + + ++ Y E S + ++D ++ Sbjct: 1086 TLKQVQTSLAVKDKINLSKILAFFDTALGQEILANTNHLYREQPFSMLKRDQKSQEDFVV 1145 Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 G +D + + I +F+YKT + E + + AQL++Y + L +Y +++ L Sbjct: 1146 RGILDGYLLYEDKIVLFDYKTDRY--DEPSQLINRYRAQLALYGEALSRAYSIENIEKYL 1203 Query: 925 IYVSEPKVFII 935 I + + +V ++ Sbjct: 1204 ILLGKDEVQVV 1214 >gi|225861093|ref|YP_002742602.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14] gi|298230417|ref|ZP_06964098.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255440|ref|ZP_06979026.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502847|ref|YP_003724787.1| ATP-dependent deoxyribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|225727192|gb|ACO23043.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14] gi|298238442|gb|ADI69573.1| ATP-dependent deoxyribonuclease, subunit A [Streptococcus pneumoniae TCH8431/19A] Length = 1216 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVTFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|168492513|ref|ZP_02716656.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04] gi|183573318|gb|EDT93846.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04] Length = 1216 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|323483646|ref|ZP_08089030.1| recombination helicase AddA [Clostridium symbiosum WAL-14163] gi|323403073|gb|EGA95387.1| recombination helicase AddA [Clostridium symbiosum WAL-14163] Length = 1092 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 156/941 (16%), Positives = 302/941 (32%), Gaps = 115/941 (12%) Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K E K+ EK+++ + + +S L L LA+ A + E Sbjct: 164 PDKKEAVSECRKRIKKSVEKMREQYLFESPEKTLEDMEAGKESILMLLALAEEFAARFRE 223 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAW--IRYKIDQEINHILIDEVQDTSLIQWEVIR 197 K++ V+DF DL ++L + + ++ ++ + IL+DE QD++L+Q +I Sbjct: 224 KKREKNVVDFNDLEHFALEVLTEAGTGRPGPVADELSRQFDEILVDEYQDSNLVQETLIH 283 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 ++ + +F VGD KQSIY F A P+ L + T+ + Sbjct: 284 CISRE-------RFGSPNVFMVGDVKQSIYKFRLARPELFLEKYNSY----TSEESLYQK 332 Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 IEL +FRS +L ++ +F + + T + +S G Q Sbjct: 333 IELHQNFRSRDTVLMSINDIFFRIMTKKLGNIEYTDETALHPGASFEPYEGRKQGELDTE 392 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRV 370 + + E D + ++ + A IA I + G + R Sbjct: 393 LLLINTAGSELEGL---DDDISDYTARELEAGMIAGKIRELTGEENGMAVWDKDEKCYRP 449 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + DI++L+R + I R D + ++ ++ L I + Sbjct: 450 ARYGDIVILLRSVSGWA---ESFTEILAHQGIPAFAESRTGYFDTVEVETVLNLLAVIDN 506 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHETETVYEYIQKFANCGI------ 478 D+ +LK+P ++ ++ I ++ +Y + F + Sbjct: 507 PIQDIPLASVLKAPFCGLADRELAHITAVCKRNIEKGRDRGLYSAVMNFLSESRADSEHG 566 Query: 479 ------------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-IS 519 K + +K I L +A + H I Sbjct: 567 PEGEKSGTDELFNDAAIAEKLEKTVKLIEGLRKMAVYLPMHSLLHRIFDLTGYYDYVSAM 626 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRI 574 G LD + E SY + I +E+ + N VRI Sbjct: 627 PAGETRRANLDMLVEKASSYEATSYRGVFHFIKYIEKLKKYNTDFGEASTVNEQGNTVRI 686 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 M++H +KGLE P+V + G K+ I + K + Sbjct: 687 MSIHKSKGLEFPIVIVAGMGKMFNKQDTRGKILIDSEFGIGTDYLDSRKRLKGPTLKKNV 746 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---------------- 678 + + ++ E R+LYV MTRA ++LI+ + + Sbjct: 747 MKRRMELEALGEELRVLYVAMTRAKEKLIMTASDKNLDGRIEKWRQISLYGGQVPYTILT 806 Query: 679 --RTWYDMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENTPLEREETIKQLM 734 + D + S + + ++ +E E + I Sbjct: 807 MAGSCLDWLLMSIRESGCRISVTRVKAEDQLVNEIEEQLSKKVSREELLNRDPDRIYDAA 866 Query: 735 DEQKIPKKLF--SPIKNDINEPYILNPSTIDTKGKTNL-------------ESLLSDNQT 779 +++ P + D+ ++ S + +G E Sbjct: 867 YRKRLETSFHFRYPYEADVALNTKMSVSELKKEGMEAEEETAFLPTLPVFMEEEEVREGG 926 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLL-LSITRLLENPM 836 +RG H+ ++++ + + +T + + + I R + Sbjct: 927 TSRGTAYHRAMELLPF-SQITSEEEVTRLLNQYTEEGKLAKEARDMIWPPDIYRFFTTKL 985 Query: 837 MTTAMSC----DSYSEVSVSGKINCPKKD-------IIISGRIDQISISQQNIFIFEYKT 885 + Y E I + ++I G ID + + + +YKT Sbjct: 986 GKRMQAAAQAGKLYKEKQFVMGIPAREMGDWDSDELVLIQGIIDAWFEEEDGLILVDYKT 1045 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + +I + + QL YEK L +++ IY Sbjct: 1046 DYVNDAQI--LVKRYKTQLDYYEKALTQML-GRNVKERYIY 1083 >gi|149006188|ref|ZP_01829900.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74] gi|307127336|ref|YP_003879367.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B] gi|147761965|gb|EDK68927.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74] gi|306484398|gb|ADM91267.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B] gi|332075086|gb|EGI85557.1| recombination helicase AddA [Streptococcus pneumoniae GA17545] Length = 1216 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|168483212|ref|ZP_02708164.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00] gi|168493077|ref|ZP_02717220.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06] gi|172043538|gb|EDT51584.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00] gi|183576624|gb|EDT97152.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06] Length = 1216 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQITILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|297584273|ref|YP_003700053.1| recombination helicase AddA [Bacillus selenitireducens MLS10] gi|297142730|gb|ADH99487.1| recombination helicase AddA [Bacillus selenitireducens MLS10] Length = 1244 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 161/1001 (16%), Positives = 319/1001 (31%), Gaps = 130/1001 (12%) Query: 51 QTLQQASQTQCIEERFSLLSSF-FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---- 105 + +T LSS F K +K EI +K L++K KK+ D Sbjct: 264 DQAKNILETDHPGTAIDRLSSVTFPRLKPLSKKVEFDPEIQEKIKQLRDKAKKTVDDSRS 323 Query: 106 --EFIKIRDRFNTY-KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 + D N + + + Y K++ V+DF DL +L Sbjct: 324 AYALNSLDDALNDLGALAEPVRELAKTIQRFEKKYAIKKREKGVVDFSDLEHFALKILTS 383 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 I + ++ DE QDT+ +Q ++ + S+ F VGD Sbjct: 384 SLKGEPIANQYSNYFQEVMTDEYQDTNRVQEAILSQV-----------SNSSNRFMVGDI 432 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 KQSIY F AEP L + R + G +I+L ++FRS +IL+ V+ VF Sbjct: 433 KQSIYRFRLAEPGIFLDKYRRYTSDGSGEG---MVIDLSMNFRSRDEILSAVNYVFRQTM 489 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVG----TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + + + V + V++++S+ P Q + + Sbjct: 490 DERVGEIRYDDAASLVTGNHRFPEVFSPLVHVQLVNVAENESETEPHQTPDSDSDEKEQD 549 Query: 339 ESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 S+A AR + +I +M + ++F G +R + +DI++LVR + Sbjct: 550 LSAAQAEARSMIASIKSMTESSSVFDPSTGHERPVSYRDIVILVRSMTWADTFMEEFKA- 608 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I + + + ++ ++AL + I + + D+ +L+SP+ S D++ +I Sbjct: 609 ---AGIPMYADLSNGYFTAIEVQIMIALLKIIDNPKQDVPLASVLRSPIVGLSADEMAEI 665 Query: 457 CTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 ++ + K + + + E A+ + + Sbjct: 666 RIDLPSSDFFSAIHHYADQDQVENESLQIKVKSFLTKLDEWRSSARSTALSSLIWKLYRD 725 Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRA 564 G + L + E+ S+ L +S + + RA Sbjct: 726 TGYYDYAGGMPGGKQRQANLKALYDRAKAYEKTSFRGLYRFLSFIAKMQERGDDLGEARA 785 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + VR+MT+H +KGLE P+VF+ + K + + Sbjct: 786 IGEQEDVVRLMTIHKSKGLEFPIVFIPGINREFNQMDLRKSYLMHQKHGFGTQWFDPELR 845 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----------- 673 + + + ++ E R+LYV MTRA +QL + + Sbjct: 846 VLYPSVQHELMKEISRREMLAEEMRVLYVAMTRAKEQLHLIGSGKNLPDQLEKWVNAGDD 905 Query: 674 --------KKSNQRTWYDMVYDSFHNDERV-----------------------KKIKLTN 702 ++ + + D + + + + LT Sbjct: 906 EGPLIPVPQRLRSKRYADWIIPAIGRHPDIQQCLRDQTADIPIPSTILDDRSKWSMTLTQ 965 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 S + +++ H L + +K K+ F L T+ Sbjct: 966 STDLPQYVGDLQPEQHTIIDQLAKGAPVKSDPALDLEVKERFEWSYAHKEATQYLAKQTV 1025 Query: 763 DTKG---------------------KTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEH 799 + + +G ++H ++Q+ + Sbjct: 1026 SELKQTLDSDYGSDDFVRHFTPDFAERPAFMQQKKLKPAEKGTLVHLVMQLVNLKQTSNK 1085 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC 857 + + + + + +E L + I R + + E+ S + Sbjct: 1086 EIQAQLKQWVNE--DRLTHEEADQLPVEQIARFFQTETGAEMKEAKLVWRELPFSFEAPV 1143 Query: 858 P----------KKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIP------YTH 900 + + I G +D + S + + +YKT + + Sbjct: 1144 KMAYPDWEGPSDEHVFIQGMVDALYQSNDGELVLVDYKTDRIPEHLQDDSAIGAYFINRY 1203 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 Q+ +Y +KDS+ L V + I Q L Sbjct: 1204 QTQIKLYSAAIKDSWKQNIDKACLYLVENGMIVTIDQEVLE 1244 >gi|301794254|emb|CBW36675.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae INV104] Length = 1216 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 340/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEICSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK + Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQTFMSHFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALVEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIDEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q+I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQII-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|15901017|ref|NP_345621.1| exonuclease RexA [Streptococcus pneumoniae TIGR4] gi|15903084|ref|NP_358634.1| exonuclease RexA [Streptococcus pneumoniae R6] gi|116515444|ref|YP_816490.1| exonuclease RexA [Streptococcus pneumoniae D39] gi|81531934|sp|Q97QP9|ADDA_STRPN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA; AltName: Full=Exonuclease RexA gi|81588100|sp|Q8DPR6|ADDA_STRR6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|122278624|sp|Q04KF8|ADDA_STRP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|14972629|gb|AAK75261.1| exonuclease RexA [Streptococcus pneumoniae TIGR4] gi|15458659|gb|AAK99844.1| First subunit of major exonuclease [Streptococcus pneumoniae R6] gi|116076020|gb|ABJ53740.1| exonuclease RexA [Streptococcus pneumoniae D39] Length = 1216 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGRLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAAFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|325663486|ref|ZP_08151896.1| recombination helicase AddA [Lachnospiraceae bacterium 4_1_37FAA] gi|325470385|gb|EGC73616.1| recombination helicase AddA [Lachnospiraceae bacterium 4_1_37FAA] Length = 1052 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 162/1040 (15%), Positives = 323/1040 (31%), Gaps = 154/1040 (14%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ E+ L+ + + + ++ Q L + Q Sbjct: 43 LRKAL----EETMTLLEEGIRQCQEPDGPYMYADA-------LKEDRERIQKLLAQTTMQ 91 Query: 61 CIEERFSLLS-SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 + + F+ F K +T + ++K+ + +D+F M Sbjct: 92 GMYDLFADWKWKRFAANKDKSVSEELTASVKNIREEVKDIVGALKDQFFYEAPEELWKDM 151 Query: 120 FKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----SAWIRYK 172 ++ L + +EE K+ ++DF D+ +L ++ + Sbjct: 152 VEAGKTMSVLAGLVQSFADAFEEKKRSKHLIDFSDMEQYALRILTEKTEEGLIPSEAAKD 211 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + ++IDE QD++LIQ ++ +F VGD KQSIY F + Sbjct: 212 YQNKFAEVMIDEYQDSNLIQEAIL-------TSVSTVSEGNYNVFMVGDVKQSIYRFRLS 264 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSED 290 P+ + + + I+L +FRS ++L + VF ++ D Sbjct: 265 RPELFMEKFNTY----NIEESQKQRIDLHKNFRSRREVLDSTNFVFEQIMTKELGEITYD 320 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + + + G V + + + + + S + AR IA Sbjct: 321 EKAALYVGADYEEKPGMKAEVLLVNTAENFSEQTE----------VREASDRELEARAIA 370 Query: 351 YTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I ++G +F G R + DI++L R K + + N I Sbjct: 371 ARIKQLVGAHPVFDKKSGAYRPAKYSDIVILTRSLKGWT---DVFTEVLNREGIPTFTGS 427 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 + + I+ L+ R + + DL +LKS S ++ KI + E YE Sbjct: 428 KEGYFETREIRLLLDYLRVLDNPRQDLPLAAVLKSMFAGLSSEEFAKIKCEEKE-VPFYE 486 Query: 469 YIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 +Q + K + + + + + H+ IL + G Sbjct: 487 AVQDYRRMGDDRAIQEKLDRCYEKMEDFRERLPYTAIHELLWQILDETGYGNYVAAMPGG 546 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L+ + + E SY L + +EQ + VR+M++ Sbjct: 547 GQRAANLEMLVEKAIAFEATSYKGLFNFVRYIEQLRKYDIDYGEANIADEQADTVRLMSI 606 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE P+V + + + + P L ++K + + + Sbjct: 607 HKSKGLEFPIVIVAGMSKRFNMQDTTGSIVVHPELGVGVDAVDLEYRTKIPTFLKKVIQR 666 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678 ++ E R+LYV +TRA ++LI+ + +K S Sbjct: 667 KVQLENLGEELRVLYVALTRAKEKLILIGSISNLEKKLKSFASIQSREQTALPFGVLSRA 726 Query: 679 RTWYDMV-------------------------YDSFHNDERVKKIKLTNSINKDEWIAYE 713 +++D + V + + E Sbjct: 727 TSYFDWILPALFRNQVLADLLNGYGMNVPFTNAMYQKEVPLVVEEIFPEHLILQETAEEV 786 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 E + ++I ++ + + L + + K ++ E Sbjct: 787 EQALTEELLRNWDTAYVYDERMREQIEEQFSYQYPYESMQKMKLKFTVSELKKRSEPEEE 846 Query: 774 LSD---------------------------NQTFNRGLIIHKLLQVIFT---LPEHKRKN 803 + +RG HK L+++ + Sbjct: 847 AGEILYEEPEIVPLVPNFMREKTEPGYTGTLSGASRGTAYHKFLELLDFGHSYTISQLYA 906 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM----TTAMSCDSYSEVSVSGKINCP- 858 +C + K+ P I LLE+P+ A S E ++ Sbjct: 907 EAEKFCEE-GKMQPEMMESIYYKDILGLLESPLGLRLRKAAQSGCLKKEQPFVLGVSADT 965 Query: 859 ------------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906 ++ +I+ G ID I + +YKT E + + QLS Sbjct: 966 IYPELFERQEEEEELLIVQGIIDVYFEEADGIVVVDYKTDR--AASREELAERYEKQLSY 1023 Query: 907 YEKILKDSYPNKSLVCLLIY 926 Y ++L+ K + +IY Sbjct: 1024 YGEVLERL-TGKRVKEKIIY 1042 >gi|169833925|ref|YP_001694551.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6] gi|251764563|sp|B1IBR6|ADDA_STRPI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|168996427|gb|ACA37039.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6] Length = 1216 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 160/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLAHV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTA 580 L + E++++ L I ++Q + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLPRFIRMIDQVLEAQHDLASVVVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|323692610|ref|ZP_08106842.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum WAL-14673] gi|323503307|gb|EGB19137.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum WAL-14673] Length = 1222 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 156/941 (16%), Positives = 302/941 (32%), Gaps = 115/941 (12%) Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K E K+ EK+++ + + +S L L LA+ A + E Sbjct: 294 PDKKEAVSECRKRIKKSVEKMREQYLFESPEKTLEDMEAGKESILMLLALAEEFAARFRE 353 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAW--IRYKIDQEINHILIDEVQDTSLIQWEVIR 197 K++ V+DF DL ++L + + ++ ++ + IL+DE QD++L+Q +I Sbjct: 354 KKREKNVVDFNDLEHFALEVLTEAGTGRPGPVADELSRQFDEILVDEYQDSNLVQETLIH 413 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 ++ + +F VGD KQSIY F A P+ L + T+ + Sbjct: 414 CISRE-------RFGSPNVFMVGDVKQSIYKFRLARPELFLEKYNSY----TSEESLYQK 462 Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 IEL +FRS +L ++ +F + + T + +S G Q Sbjct: 463 IELHQNFRSRDTVLMSINDIFFRIMTKKLGNIEYTDETALHPGASFEPYEGRKQGELDTE 522 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRV 370 + + E D + ++ + A IA I + G + R Sbjct: 523 LLLINTAGSELEGL---DDDISDYTARELEAGMIAGKIRELTGEENGMAVWDKDEKCYRP 579 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + DI++L+R + I R D + ++ ++ L I + Sbjct: 580 ARYGDIVILLRSVSGWA---ESFTEILAHQGIPAFAESRTGYFDTVEVETVLNLLAVIDN 636 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHETETVYEYIQKFANCGI------ 478 D+ +LK+P ++ ++ I ++ +Y + F + Sbjct: 637 PIQDIPLASVLKAPFCGLADRELAHITAVCKRNIEKGRDRGLYSAVMNFLSESRADSEHG 696 Query: 479 ------------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-IS 519 K + +K I L +A + H I Sbjct: 697 PEGEKSGTDELFNDAAIAEKLEKTVKLIEGLRKMAVYLPMHSLLHRIFDLTGYYDYVSAM 756 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRI 574 G LD + E SY + I +E+ + N VRI Sbjct: 757 PAGETRRANLDMLVEKASSYEATSYRGVFHFIKYIEKLKKYNTDFGEASTVNEQGNTVRI 816 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 M++H +KGLE P+V + G K+ I + K + Sbjct: 817 MSIHKSKGLEFPIVIVAGMGKMFNKQDTRGKILIDSEFGIGTDYLDSRKRLKGPTLKKNV 876 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---------------- 678 + + ++ E R+LYV MTRA ++LI+ + + Sbjct: 877 MKRRMELEALGEELRVLYVAMTRAKEKLIMTASDKNLDGRMEKWRQISLYGGQVPYTILT 936 Query: 679 --RTWYDMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENTPLEREETIKQLM 734 + D + S + + ++ +E E + I Sbjct: 937 MAGSCLDWLLMSIRESGCRISVTRVKAEDQLVNEIEEQLSKKVSREELLNRDPDRIYDAA 996 Query: 735 DEQKIPKKLF--SPIKNDINEPYILNPSTIDTKGKTNL-------------ESLLSDNQT 779 +++ P + D+ ++ S + +G E Sbjct: 997 YRKRLETSFHFRYPYEADVALNTKMSVSELKKEGMEAEEETAFLPTLPVFMEEEEVREGG 1056 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLL-LSITRLLENPM 836 +RG H+ ++++ + + +T + + + I R + Sbjct: 1057 TSRGTAYHRAMELLPF-SQITSEEEVTRLLNQYTEEGKLAKEARDMIWPPDIYRFFTTKL 1115 Query: 837 MTTAMSC----DSYSEVSVSGKINCPKKD-------IIISGRIDQISISQQNIFIFEYKT 885 + Y E I + ++I G ID + + + +YKT Sbjct: 1116 GKRMQAAAEAGKLYKEKQFVMGIPAREMGDWDSDELVLIQGIIDAWFEEEDGLILVDYKT 1175 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + +I + + QL YEK L +++ IY Sbjct: 1176 DYVNDAQI--LVKRYKTQLDYYEKALTQML-GRNVKERYIY 1213 >gi|237820788|ref|ZP_04596633.1| recombination helicase AddA [Streptococcus pneumoniae CCRI 1974M2] Length = 1216 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ + K + + + I P + PS I + Sbjct: 981 QSDTIKEALKMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|332075466|gb|EGI85935.1| recombination helicase AddA [Streptococcus pneumoniae GA41301] Length = 1216 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGRLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAAFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSHEKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|182684115|ref|YP_001835862.1| exonuclease RexA [Streptococcus pneumoniae CGSP14] gi|303255773|ref|ZP_07341815.1| exonuclease RexA [Streptococcus pneumoniae BS455] gi|251764565|sp|B2IPX3|ADDA_STRPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|182629449|gb|ACB90397.1| exonuclease RexA [Streptococcus pneumoniae CGSP14] gi|301801979|emb|CBW34707.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae INV200] gi|302597285|gb|EFL64389.1| exonuclease RexA [Streptococcus pneumoniae BS455] Length = 1216 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 162/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIDSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADTYNEERKTQFAKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKAHENLYEKLVNAQKK 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLRDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y K++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIKNIEKYLILLGKDEVQVV 1214 >gi|303260559|ref|ZP_07346525.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293] gi|303262692|ref|ZP_07348631.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292] gi|303265228|ref|ZP_07351139.1| exonuclease RexA [Streptococcus pneumoniae BS397] gi|303266991|ref|ZP_07352865.1| exonuclease RexA [Streptococcus pneumoniae BS457] gi|303269649|ref|ZP_07355407.1| exonuclease RexA [Streptococcus pneumoniae BS458] gi|302636124|gb|EFL66620.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292] gi|302638272|gb|EFL68741.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293] gi|302640820|gb|EFL71209.1| exonuclease RexA [Streptococcus pneumoniae BS458] gi|302643471|gb|EFL73744.1| exonuclease RexA [Streptococcus pneumoniae BS457] gi|302645199|gb|EFL75435.1| exonuclease RexA [Streptococcus pneumoniae BS397] Length = 1216 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 162/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIDSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKSTL-ASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADTYNEERKTQFAKLGQLSDQIAILDYQERYRGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKAHENLYEKLVNAQKK 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLRDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y K++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIKNIEKYLILLGKDEVQVV 1214 >gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse beta subunit [Thermoanaerobacter tengcongensis MB4] gi|81590788|sp|Q8RCZ0|ADDA_THETN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|20515247|gb|AAM23560.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Thermoanaerobacter tengcongensis MB4] Length = 1204 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 165/985 (16%), Positives = 334/985 (33%), Gaps = 121/985 (12%) Query: 35 VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF---FLTQKFTPQKNIITQEINK 91 +E +A L++ ++ E + + L + + +E+ K Sbjct: 240 EERGLEGYLSLFQSEAHHLKELIDSKSWNEFKKKIEAISFERLPKASKEADAEVKEEVRK 299 Query: 92 KSPDLKEKLKKSQDEF---IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 D+K+++++ +D+F + + K++ A L + Y E KK+ V+D Sbjct: 300 LREDVKKRIREIRDKFFIDEEEEIKREIKKLYPVMKALADLILMFDKKYGEKKKEKGVID 359 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 FED+ +L + + ++ I IDE QD+SLIQ ++ + Sbjct: 360 FEDIEHFALKILSNEE----VVSYYREKFEEIFIDEYQDSSLIQEAILSLIA-------- 407 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 +P F VGD KQSIY F A P + + N I L +FRS Sbjct: 408 -RDNPPNRFMVGDVKQSIYRFRQANPYIFFEKYTSYSQEGEN-----KKILLYKNFRSRK 461 Query: 269 DILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 +I+ V+ +F N + + + ++ + + ++ Sbjct: 462 EIIDAVNYIFEKIMSKNIGEVDYSEEEKLNYGANYESNPFEKE-----NERTVEVHLIER 516 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKR 383 E + + + A + I + + G R ++ +DI VL+R Sbjct: 517 EREEEFEEDEEILDDMQVEAHVVGERIKGLFREGFKVYDKEIGGYRPVEYRDICVLLRA- 575 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 T + I V + D IK +++L + I + D+ + +L+S Sbjct: 576 --TEKWAYAFEEEFVKMGIPVFADTNAGYFDTAEIKTMLSLLQVIDNPMQDIPLLAVLRS 633 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQK--FANCGISKFQHVIKYIHELIHIAQFCSPH 501 P+F+F+E+++ I + + + + K ++ + + + + Sbjct: 634 PIFSFTEEELVDIRLEDADGTIYEALKKASLREDELGEKVRNFLDSLKRWQEKSIYMPVD 693 Query: 502 DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY--- 557 +F + G E L E+ S+ L ++ + + Sbjct: 694 EFLWYLYEETGFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKGLFNFVNFINRLRTT 753 Query: 558 --PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + N N VR+M++H +KGLE P+V + G Q + +K+ L Sbjct: 754 STDMGSAKTVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKDLNEKILYHHFLGIG 813 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 P + + + + + +K + E R+LYV +TRA ++LI+ E+ Sbjct: 814 PEFVDYRRRLSYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEKLILVASVKDIKERA 873 Query: 676 SNQR------------------TWYDMVYDSFHNDERVKKIKLTNSINKD--------EW 709 ++ D + + +K ++ I+ + E Sbjct: 874 KKWGKAKLLGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFAEISPELEQDSSKWEV 933 Query: 710 IAYEWSTHHPENTPLEREETIKQL------------MDEQKIPKKLFSPIKNDINEPYIL 757 + E E E +++L E + P P L Sbjct: 934 KIWNKRDVIIERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNYVYPYDRSSKLPAKL 993 Query: 758 NPSTID-------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---T 795 + + I RG+ +H ++Q + Sbjct: 994 SVTEIKRILNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGIAMHLVMQKLDLSKD 1053 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSG 853 L K I + ++ K + I R + P+ + + + EV Sbjct: 1054 LSYRGIKEQIKDMVKNE--ILTEEQAKEVDANKIERFFKTPLGKRLLKAKEVRREVPFHI 1111 Query: 854 KIN-----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902 KI+ ++ I + G ID + + + +YKT + +IE I + Sbjct: 1112 KISSREIYRDLPEVYQEEFIAVQGIIDCFFEEEGELVLIDYKTDYVENGKIEEIRDKYRV 1171 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYV 927 Q+ +Y K L++ K + IY+ Sbjct: 1172 QIDLYGKALEEI-TGKKVKEKYIYL 1195 >gi|149013113|ref|ZP_01833959.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75] gi|147763058|gb|EDK70001.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75] Length = 1216 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 338/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-- 727 N + W + F D+ + E T P + + Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSFQADNR 980 Query: 728 --ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|148998405|ref|ZP_01825847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70] gi|168576141|ref|ZP_02722035.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577182|ref|ZP_02722997.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577235|ref|ZP_02723036.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577251|ref|ZP_02723047.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|194397993|ref|YP_002037761.1| exonuclease RexA [Streptococcus pneumoniae G54] gi|251764542|sp|B5E4P5|ADDA_STRP4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|147755802|gb|EDK62847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70] gi|183577186|gb|EDT97714.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577191|gb|EDT97719.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577238|gb|EDT97766.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577934|gb|EDT98462.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|194357660|gb|ACF56108.1| exonuclease RexA [Streptococcus pneumoniae G54] Length = 1216 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 160/1019 (15%), Positives = 335/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QD + IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDINHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKAHENLYEKLVNAQKK 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + + Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTALGQEIFANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|149025505|ref|ZP_01836438.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72] gi|147929377|gb|EDK80374.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72] Length = 1216 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 162/1019 (15%), Positives = 341/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK + Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 ELAKTFQTFMSHFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + V+ + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQVMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W ++ F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWVISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q+I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQII-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|254478432|ref|ZP_05091809.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653] gi|214035603|gb|EEB76300.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653] Length = 1184 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 165/985 (16%), Positives = 334/985 (33%), Gaps = 121/985 (12%) Query: 35 VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF---FLTQKFTPQKNIITQEINK 91 +E +A L++ ++ E + + L + + +E+ K Sbjct: 219 EERGLEGYLSLFQSEAHHLKELIDSKSWNEFKKKIEAISFERLPKASKEADAEVKEEVRK 278 Query: 92 KSPDLKEKLKKSQDEF---IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 D+K+++++ +D+F + + K++ A L + Y E KK+ V+D Sbjct: 279 LREDVKKRIREIRDKFFIDEEEEIKREIKKLYPVMKALADLILMFDKKYGEKKKEKGVID 338 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 FED+ +L + + ++ I IDE QD+SLIQ ++ + Sbjct: 339 FEDIEHFALKILSNEE----VVSYYREKFEEIFIDEYQDSSLIQEAILSLIA-------- 386 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 +P F VGD KQSIY F A P + + N I L +FRS Sbjct: 387 -RDNPPNRFMVGDVKQSIYRFRQANPYIFFEKYTSYSQEGEN-----KKILLYKNFRSRK 440 Query: 269 DILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 +I+ V+ +F N + + + ++ + + ++ Sbjct: 441 EIIDAVNYIFEKIMSKNIGEVDYSEEEKLNYGANYESNPFEKE-----NERTVEVHLIER 495 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKR 383 E + + + A + I + + G R ++ +DI VL+R Sbjct: 496 EREEEFEEDEEILDDMQVEAHVVGERIKGLFREGFKVYDKEIGGYRPVEYRDICVLLRA- 554 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 T + I V + D IK +++L + I + D+ + +L+S Sbjct: 555 --TEKWAYAFEEEFVKMGIPVFADTNAGYFDTAEIKTMLSLLQVIDNPMQDIPLLAVLRS 612 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQK--FANCGISKFQHVIKYIHELIHIAQFCSPH 501 P+F+F+E+++ I + + + + K ++ + + + + Sbjct: 613 PIFSFTEEELVDIRLEDADGTIYEALKKASLREDELGEKVRNFLDSLKRWQEKSIYMPVD 672 Query: 502 DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY--- 557 +F + G E L E+ S+ L ++ + + Sbjct: 673 EFLWYLYEETGFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKGLFNFVNFINRLRTT 732 Query: 558 --PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + N N VR+M++H +KGLE P+V + G Q + +K+ L Sbjct: 733 STDMGSAKTVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKDLNEKILYHHFLGIG 792 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 P + + + + + +K + E R+LYV +TRA ++LI+ E+ Sbjct: 793 PEFVDYRRRLSYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEKLILVASVKDIKERA 852 Query: 676 SNQR------------------TWYDMVYDSFHNDERVKKIKLTNSINKD--------EW 709 ++ D + + +K ++ I+ + E Sbjct: 853 KKWGKAKLLGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFAEISPELEQDSSKWEV 912 Query: 710 IAYEWSTHHPENTPLEREETIKQL------------MDEQKIPKKLFSPIKNDINEPYIL 757 + E E E +++L E + P P L Sbjct: 913 KIWNKRDVIVERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNYVYPYDRSSKLPAKL 972 Query: 758 NPSTID-------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---T 795 + + I RG+ +H ++Q + Sbjct: 973 SVTEIKRILNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGIAMHLVMQKLDLSKD 1032 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSG 853 L K I + ++ K + I R + P+ + + + EV Sbjct: 1033 LSYRGIKEQIKDMVKNE--ILTEEQAKEVDANKIERFFKTPLGKRLLKAKEVRREVPFHI 1090 Query: 854 KIN-----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902 KI+ ++ I + G ID + + + +YKT + +IE I + Sbjct: 1091 KISSREIYRDLPEVYQEEFIAVQGIIDCFFEEEGELVLIDYKTDYVENGKIEEIRDKYRV 1150 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYV 927 Q+ +Y K L++ K + IY+ Sbjct: 1151 QIDLYGKALEEI-TGKKVKEKYIYL 1174 >gi|225856772|ref|YP_002738283.1| recombination helicase AddA [Streptococcus pneumoniae P1031] gi|225725942|gb|ACO21794.1| recombination helicase AddA [Streptococcus pneumoniae P1031] Length = 1216 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLERFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLSSVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|327389307|gb|EGE87652.1| recombination helicase AddA [Streptococcus pneumoniae GA04375] Length = 1034 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 58 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 117 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 118 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 177 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 178 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 234 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 235 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 283 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 284 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 339 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 340 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 390 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 391 --------KGVTFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 438 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 439 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 498 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 499 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 558 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 559 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 618 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 619 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 678 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 679 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 738 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 739 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 798 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 799 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 858 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 859 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 915 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 916 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 975 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 976 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1032 >gi|221231865|ref|YP_002511017.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae ATCC 700669] gi|251764564|sp|B8ZQ32|ADDA_STRPJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|220674325|emb|CAR68871.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae ATCC 700669] Length = 1216 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 338/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK + Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 ELAKTFQTFMSHFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKANFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|168486450|ref|ZP_02710958.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00] gi|183570541|gb|EDT91069.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00] Length = 1216 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 160/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLNPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK + Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 ELAKTFQTFISHFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLNQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE VF+++ + ++ + + ++ Sbjct: 801 KGLEFSYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 GLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|225854627|ref|YP_002736139.1| recombination helicase AddA [Streptococcus pneumoniae JJA] gi|225723772|gb|ACO19625.1| recombination helicase AddA [Streptococcus pneumoniae JJA] Length = 1216 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKANFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|307067686|ref|YP_003876652.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Streptococcus pneumoniae AP200] gi|306409223|gb|ADM84650.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Streptococcus pneumoniae AP200] Length = 1216 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 160/1019 (15%), Positives = 335/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QD + IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDINHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEYKAHENLYEKLVNAQKK 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + + Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTALGQEIFANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|307706581|ref|ZP_07643388.1| recombination helicase AddA [Streptococcus mitis SK321] gi|307618036|gb|EFN97196.1| recombination helicase AddA [Streptococcus mitis SK321] Length = 1216 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 154/1018 (15%), Positives = 324/1018 (31%), Gaps = 141/1018 (13%) Query: 15 LIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 I + LW L F ++ + + + +Q + ++L+ Sbjct: 241 QIQQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQIYQAVLARVV 300 Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS------- 122 K +++ L + + + + ++ D+ + Sbjct: 301 AISKEKNGRSLTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHEDSWK 360 Query: 123 -TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 Y + K++ +F D+ T ++L+ +R + I+ Sbjct: 361 LAKTFQAFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVREAYQDRFHEIM 417 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 418 VDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEKF 466 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + + ++ +I L +FRS++++L+ + VF + + + + + Sbjct: 467 QRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFAN 522 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + + + ++E E+ + R + I + Sbjct: 523 TKLTPNSDNKAEFLLYDKDDTSEEEEG--------QAETKLTGEMRLVIKEILKLYKEQ- 573 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIKD 420 + K+I +L R ++Y I V + L ++ Sbjct: 574 --------GVSFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQV 621 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 622 MLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKMV 681 Query: 479 ------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 K + + + + S +D I + + G Sbjct: 682 SSQKVLIHSALAEKLKQFMDILASWRLYTKTHSLYDLIWKIYNDRFYYDYVGALPNGPAR 741 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQEL----ISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581 L + E++++ L LE A + + V +MT+H +K Sbjct: 742 QANLYALALRADQFEKSNFKGLSRFIGMINQVLEAQHDLASVAVAPPKDAVELMTIHKSK 801 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI---------- 631 GLE P VF+++ + ++ + + ++ Sbjct: 802 GLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKMETGAVEDHYPKTIKLSIPS 861 Query: 632 --VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 862 LTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAAKNGKLNSN 921 Query: 675 ----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HPENTPLER 726 N + W + F D + E T + Sbjct: 922 TRLQAKNFQDWIWAISKVFTKDHLNFSYRFVGEDQLTREAIGELETKSNLQDSSQADNRQ 981 Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------ 762 ETIK+ ++ K + + + I P + PS I Sbjct: 982 SETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIASQGQAVDK 1041 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 + S G H+L+Q + +R + T Sbjct: 1042 KISFELPDFSTKEKVTGAEIGSATHELMQRMD---LSQRPTLASLTETLKQVQTSPAVRD 1098 Query: 823 NL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQN 877 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1099 KINLSKILAFFDTSLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEDK 1158 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++Y + L +Y K++ LI + + +V ++ Sbjct: 1159 IVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIKNIEKYLILLGKEEVQVV 1214 >gi|225858940|ref|YP_002740450.1| recombination helicase AddA [Streptococcus pneumoniae 70585] gi|225720195|gb|ACO16049.1| recombination helicase AddA [Streptococcus pneumoniae 70585] Length = 1216 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLAHV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLSYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAQNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVAVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|148995044|ref|ZP_01823987.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68] gi|168488979|ref|ZP_02713178.1| recombination helicase AddA [Streptococcus pneumoniae SP195] gi|147926887|gb|EDK77936.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68] gi|183572407|gb|EDT92935.1| recombination helicase AddA [Streptococcus pneumoniae SP195] gi|332073494|gb|EGI83973.1| recombination helicase AddA [Streptococcus pneumoniae GA17570] Length = 1216 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 161/1019 (15%), Positives = 338/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQITILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKAHENLYEKLVNAQKK 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q+I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQII-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214 >gi|256851163|ref|ZP_05556552.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN] gi|260660587|ref|ZP_05861502.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN] gi|282934629|ref|ZP_06339872.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|297206028|ref|ZP_06923423.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16] gi|256616225|gb|EEU21413.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN] gi|260548309|gb|EEX24284.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN] gi|281301204|gb|EFA93505.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|297149154|gb|EFH29452.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16] Length = 1186 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 165/987 (16%), Positives = 323/987 (32%), Gaps = 136/987 (13%) Query: 41 TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN-IITQEINKKSPDLKEK 99 K+ ++ + ++ ++ + L + T+ P+K+ +++ + L + Sbjct: 245 KDFSGFSKRLTRVEASLESDTFDQIRASLQNCQFTEN--PRKSSKWDEDLLDRYASLSQT 302 Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLT---------LAK-YLNAHYEEAKKKNCVLDF 149 + +D+ + F + T LA+ L A + K+K +LD+ Sbjct: 303 RAELKDQIKSLFAAFFVADNEEQTAVMKQSSSIIKAVCLAEKELIASFNSLKRKQNLLDY 362 Query: 150 EDLIINTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 D+ +L + + + + IL+DE QD + +Q +I+ + + Sbjct: 363 SDMEQLAYQILTSDTTAGHLARQFYQNKFTEILVDEYQDINKLQERIIQLMKCE------ 416 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 LF VGD KQSIY F A+P L + R K + I L +FRST Sbjct: 417 ----HNNLFMVGDVKQSIYGFRQADPSLFLNKYRAFAK-----EEAAERIVLADNFRSTK 467 Query: 269 DILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 + +V+K+F+ + G+ S ++ +S + Sbjct: 468 PVTKLVNKLFNPLLTPDFGGIDYQSEGQLKFGASYY-------------------PDDLP 508 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKR 383 + F + S S + + I +I + G KR I+ DI +L R R Sbjct: 509 TASELLFYDKSEGSEESNQIQLVINRIKQLIDEGFEVFDVKTGLKRPIEFSDIAILTRSR 568 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 I + +D + +M + + + + D+ +L+S Sbjct: 569 SQNLD----LLKQFAQNNIPLFVSDVANYFQTFELTIIMNYLKIVDNPDQDIPLAAVLRS 624 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSP 500 P+FNF E D+ KI + + Y + + + + + + + +L A Sbjct: 625 PIFNFKETDLAKI-RIKSPNTSFYSALINYVSENDELSKRIKDFLNQLADLRDFALNHRI 683 Query: 501 HDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-- 557 + I + S G + L+ E + L + I+ + + Sbjct: 684 SETIWSIYARTSLLEIVTSLPNGKQRRINLENLYERANSYESAGFKGLYQFINFINRMRK 743 Query: 558 ---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 N V++MT+H +KGLE P+VF + Q I D Sbjct: 744 NQKDLAQPLLSKEAENSVQLMTIHASKGLEFPIVFYLGLEHQFQKSDLSGNYII---SGD 800 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 GI + + + + + +K EE R++YV +TRA +LI+ + ++ Sbjct: 801 SCGITVVRSDWRIDSLVKAMGNVTKQKQLLEEEARIMYVAVTRARQKLILVTNFKEFSKD 860 Query: 675 KSN------------------------------------------------QRTWYDMVY 686 N + + +V Sbjct: 861 TENMGASLANDGSLTLTSELAAQKPADLLLPQLALNRQFINQVTDLRPEVESKQDFLVVT 920 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 E V+K + E+I P + T ++ K P Sbjct: 921 GDAEAVELVEKQDVNEEGKVSEFIVKNVKKLFEATYPFQDATTTTAYQSVSELKKAFNDP 980 Query: 747 IKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804 I +++ + + + G +H +LQ + + Sbjct: 981 IDDELANSRFIKSANRYLQDIDTRPGFLFEDGFTGAEIGTAMHLILQFFDYQGKTSVEAE 1040 Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVS---------G 853 I ++ KL P + I+ + + + EVS S Sbjct: 1041 IEKLV-QSGKLNPKIVPHLPITEISWFVNSNFAKKFWNDPTKLKREVSFSSLLPAADVFK 1099 Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEK 909 + P I++ G ID + I +F+YKT + ++ I + QL +YE+ Sbjct: 1100 PFSDPNAKILVHGTIDGYYLDDDGIILFDYKTDYVNKNQLAQSIAKIKDKYTGQLRLYER 1159 Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFIIP 936 L K LI + ++ + Sbjct: 1160 ALNQLGKEKVKSKYLILLDAQEIVEVD 1186 >gi|260583800|ref|ZP_05851548.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC 700633] gi|260158426|gb|EEW93494.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC 700633] Length = 1244 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 167/961 (17%), Positives = 313/961 (32%), Gaps = 134/961 (13%) Query: 85 ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 I ++ + ++++ + + ++ L + ++ KK + Sbjct: 306 IKRKRDSLKKHWEDQVLATAFFESPEVQMKHLRNIYPMMLHLSQVVLKFYEAFQLEKKTS 365 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKI-DQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 +DF DL +T +L I K + +LIDE QD + +Q ++ S+ + Sbjct: 366 NKIDFSDLEHDTLSILSTEKNGVLIAKKYYKELFTEVLIDEYQDVNRVQEAILTSVARE- 424 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 LF VGD KQSIY+F A+P + + A G I L + Sbjct: 425 ----------NNLFMVGDVKQSIYAFRLADPSL---FRDKYEAYADENG--GKRIILAEN 469 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 FRS +L+ + +F + + D + ++ + + + ++ Sbjct: 470 FRSRDQVLSFTNLIFRQIMDHELGQIDYDDSAALKTGNLNYSDDTDKFSECYIIQNANLE 529 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIG-------TDTIFSNGKKRVIQAKDI 376 ++E + P +SSAS IA I ++ ++ N KKR IQ KDI Sbjct: 530 EEEEESSGLESESPIDSSASAEVHFIAGKIKELMANQFEIMHEESTKENPKKRPIQYKDI 589 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 ++L + + LI + Y+I V+ I +M+ + I + D+ Sbjct: 590 VILAPTKANNGLIEEIF----TQYQIPVLVQKNLQYFKRTEIAIMMSALKIIDNPTQDIP 645 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG----------------ISK 480 FV +L+S + E + I + +++ + YE F + Sbjct: 646 FVSVLRSGIVGLDEIALAHI-RKNNKSCSFYEACVHFVEHFTLEEVNYYDSSQQQQLKER 704 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN 539 + + + IA S I + G + + L + Sbjct: 705 IKSFLDQLESWRDIANHQSISTLIWQIYMDTNYLTYVHGQSVGQQRVLNLHALYKYAKDF 764 Query: 540 EQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 E +S+ L+ + ++Q S + VR+MT+H +KGLE PVVFL++ G Sbjct: 765 EDSSFKGLRNFVRFIQQMQHKKQDLEEPTQISDEEDAVRVMTIHASKGLEYPVVFLMNAG 824 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + ++ L + + K K E R LYV Sbjct: 825 KKFNQQDIRQQAIRSDELGVGVKYLQLPERIQWTTIPYVMAYKAEKNKLLSEEMRKLYVA 884 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYD-------------------MVYDSFHNDER- 694 MTRA ++LII ++ K D + + + Sbjct: 885 MTRAREKLIIVGSLKDFDKFKEEHSMIEDIDDETLPYSLRYHVDNYLTWILMATMRKQEK 944 Query: 695 --------------VKKIKLTNSINKDEWIAYEWSTHHPENTPLE-REETIKQLMDEQKI 739 + EW E P++ ++ L Sbjct: 945 VSFHQEVIDFEQIKQNALNWIQETETTSINEVEWLQKQVEGKPVKNLSNLLEDLKQTYPY 1004 Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------------------- 778 + ++E +N D K LE + + Sbjct: 1005 LLASTTASYQSVSEIKRMN-EEPDVKQLPQLEEQTQETEKNVQQYVYLTSELAKPSFIES 1063 Query: 779 -----TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSI 828 RG +H L+Q + + + I KE ++ + Sbjct: 1064 KQKVSAAERGSGLHLLMQKLDLTKEITPEFIQETIQQLVETQFL---EKEVAAVIPVDQV 1120 Query: 829 TRLLENPMMTTAMSCDSY--SEVSVSG---------KINCPKKDIIISGRIDQISISQQN 877 ++ + E + S + + ++I G ID Sbjct: 1121 YHFFQSEFGQWIQEHQALLNREQAFSHVVTAKRIFKHLPDNEDSMLIHGIIDGFVELDDE 1180 Query: 878 IFIFEYKTHHHVPQE--IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT H VP + I+ + + QL++Y + L+ SY K +L +S + I Sbjct: 1181 IILFDYKTDHVVPTQKGIQKVVDKYKQQLNLYAEALETSYQKKVTKRMLCLLSIGQSIDI 1240 Query: 936 P 936 Sbjct: 1241 S 1241 >gi|229552293|ref|ZP_04441018.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus LMS2-1] gi|258539702|ref|YP_003174201.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus Lc 705] gi|229314365|gb|EEN80338.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus LMS2-1] gi|257151378|emb|CAR90350.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus Lc 705] Length = 1236 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 149/1043 (14%), Positives = 301/1043 (28%), Gaps = 133/1043 (12%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-----LKKAQTLQQASQTQC- 61 + +WP ++ + ++ + E N + L Sbjct: 205 APEAWAATFTHQIWPRTKRKLMQVFTTLTQADELANRLPNPVWHQQITADLNPLQSLLDN 264 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK--- 118 E + + + F ++ ++ LK + K+ +D KI Sbjct: 265 PEPSYEAVRDALVQHDFLAWSR-ASKGLDDDDKALKNEAKQLRDAAKKIWQDQLAPDFAL 323 Query: 119 -----------MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165 + +A K V D+ D+ N +L+ Sbjct: 324 TSEQITDLLRTVQPMMTMLTEVALTFLDALTAEKAVRHVQDYSDIAHNALRILQQKDPQT 383 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 A I + +++DE QD S +Q + L F VGD KQS Sbjct: 384 GAPIADNYRASFDEVMVDEYQDISPLQEAL---LAAVSTTDPGDR------FMVGDVKQS 434 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284 IY F A+P+ +++ + I L +FRST ++L + +FS + Sbjct: 435 IYGFRLADPQLFIQKYQAFAN-HPETPTAPERIILAENFRSTKNVLAFTNLIFSQIMDPE 493 Query: 285 -QGLSEDSTTTIRHRSSRIGQ--VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 L+ D +++ + G + + D W++ + Sbjct: 494 VGDLAYDDNAALKYGALDYGDCHPAVKVMLYSKATSDDDDETDATSDWSATDEDDEPLDV 553 Query: 342 ASILARRIAYTISNMIGTDTI----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 A+ + + I ++ +N + R I+ +DI +L R+ LI Sbjct: 554 ATGQTQMVIAEIQRLVSDPHAQLWDRANQQYRRIRYRDITLLTRQTTQNSLIQTQFAA-- 611 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 + + D + ++AL + I + + D+ V +L+SP+ S D + I Sbjct: 612 --AGVPLFVADTKNFFKTTELMVMLALLKIIDNPKQDIPLVAVLRSPIVGLSADQLALIR 669 Query: 458 TQRHETETVYEYI--------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 + A + + ++ +A+ I Sbjct: 670 LAAKQVPYYDAVTAFLTGTPTTPLAKRTHATLAAFLDQLNHFRDLARENDLVTLLWAIYQ 729 Query: 510 AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKR 563 G++ L ++ E + L I + Sbjct: 730 ETGFLDYVGGTPGGSQRQANLLALVDRARTYESGGFKGLFAFIHFITLMQKQDQDLATPA 789 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 +++ V++MT+H +KGLE PVVF++ T F+ + I+ Sbjct: 790 QVDPDNDAVKLMTIHKSKGLEFPVVFVLQTNKH-FNRRDQSGPAILTKNGIGIKWLDPQT 848 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--- 680 + + + T E RLLYV +TRA +L + + + + S +T Sbjct: 849 RVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGQQLTSADKTVAK 908 Query: 681 ----------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 + D + + +VK + T E+S Sbjct: 909 WAKAAEGEQLTLAPQIRGAATNYLDWIGPALIRHPQVKGLTETTVKPALIADPTEFSIAI 968 Query: 719 PENTP----LEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTKGKTNLES 772 + + + K + + S I Sbjct: 969 ETHPQIKVGVATKTPAKTDAPAIDLTGWFAKQYPFQAATTTAGFQSVSEIKRAFDDPDTM 1028 Query: 773 LLSDNQ--------------------------TFNRGLIIHKLLQVIFTLPEHKR--KNF 804 L G H LLQ++ Sbjct: 1029 ELVSADRFLGQKPPLHDLSAPAFLTETSGGGNAAAIGTATHLLLQLVDLTKPITLNSLEA 1088 Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINC----- 857 + + + + L ++ R + + EV S + Sbjct: 1089 LRHHLITTGVMPAEVAKRIDLTALVRFFATDLGQLLQAKPQQVQREVPFSMLLPANQLFE 1148 Query: 858 -----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912 P +D+++ G +D + +F+YKT H + + + QL++Y + L Sbjct: 1149 ILQNDPGEDVLVHGIMDGYVTEADGVTLFDYKTDHEP--DPAKLVARYRGQLNLYAQALA 1206 Query: 913 DSYPNKSLVCLLIYVSEPKVFII 935 P L+ + + + Sbjct: 1207 QLQPEPVTHRYLVLLRTGTIVDL 1229 >gi|331087018|ref|ZP_08336093.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409468|gb|EGG88911.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1229 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 158/1038 (15%), Positives = 315/1038 (30%), Gaps = 150/1038 (14%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ E+ L+ + + + ++ Q L + + Sbjct: 220 LRKAL----EETMALLEEGIRQCQEPDGPYMYADA-------LKEDRERIQKLLAQTTMR 268 Query: 61 CIEERFSLLS-SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 + + F+ F K +T + ++K+ + +D+F M Sbjct: 269 GMYDLFADWKWKRFAANKDKSVSEELTASVKNIREEVKDIVGALKDQFFYEAPEELWKDM 328 Query: 120 FKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----SAWIRYK 172 ++ L + +EE K+ ++DF D+ +L ++ + Sbjct: 329 VEAGKTMSVLAGLVQSFADVFEEKKRSKHLIDFSDMEQYALRILTEKTEEGLIPSEAAKD 388 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 ++ ++IDE QD++LIQ ++ +F VGD KQSIY F + Sbjct: 389 YQKKFAEVMIDEYQDSNLIQEAIL-------TSVSTVSEGNYNVFMVGDVKQSIYRFRLS 441 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSED 290 P+ + + + I+L +FRS ++L + VF ++ D Sbjct: 442 RPELFMEKFNTYSIE----ESQKQRIDLHKNFRSRREVLDSTNFVFEQIMTKELGEITYD 497 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + + + G V + D + + + S + AR IA Sbjct: 498 EKAALYVGADYEEKPGMETEVLLVNTAEDFSEQTE----------VREASDRELEARAIA 547 Query: 351 YTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I ++G +F G R + DI++L R K + + N I Sbjct: 548 ARIKQLVGVHPVFDKKSGAYRPAKYSDIVILTRSLKGWT---DVFTEVLNREGIPTFTGS 604 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 + + I+ L+ R + + DL +LKS S ++ KI + E Sbjct: 605 KEGYFETREIRLLLDYLRVLDNPRQDLPLAAVLKSMFAGLSSEEFAKIKCEEKEVPFYQA 664 Query: 469 YIQKFAN----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 K + + + + + H+ IL + G Sbjct: 665 VQDYRRMGDDRAIQEKLDRCYEKMEDFRERLPYTAIHELLWQILDETGYGNYVAAMPGGG 724 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578 + L+ + + E SY L + +EQ + VR+M++H Sbjct: 725 QRAANLEMLVEKAIAFEATSYKGLFNFVRYIEQLRKYDIDYGEANIADEQADTVRLMSIH 784 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V + + + + P L ++K + + + Sbjct: 785 KSKGLEFPIVIVAGMSKRFNMQDTTGSIVVHPELGVGVDAVDLEYRTKIPTFLKKVIQRK 844 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679 ++ E R+LYV +TRA ++LI+ + +K S Sbjct: 845 VQLENLGEELRVLYVALTRAKEKLILIGSISNLEKKLKSFASIQSREQTALPFGVLSRAT 904 Query: 680 TWYDMV-------------------------YDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +++D + V + + E Sbjct: 905 SYFDWILPALFRNQVLADLLNGYGMNVPFTNAMYQKEVPLVVEEIFPEHLILQETAEEVE 964 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 E + +I ++ + + L + + K ++ E Sbjct: 965 QALTEELLRNWDTAYVYDERMRAQIEEQFSYQYPYEAMQKMKLKFTVSELKKRSEPEEAA 1024 Query: 775 SD---------------------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807 + +RG HK L+++ + Sbjct: 1025 GEILYEEPEIVPLVPNFMREKTEPGYTGTLSGASRGTAYHKFLELLDFGKSYTISQLYAE 1084 Query: 808 YCT--KNAKLWPAKEYKNLLLSITRLLENPMM----TTAMSCDSYSEVSVSGKINCP--- 858 + KL P I LLE+P+ A S E ++ Sbjct: 1085 AAKFCEEGKLKPEMMESIYYKDILGLLESPLGLRFQKAAQSGCLKKEQPFVLGVSADTIY 1144 Query: 859 ----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 ++ +I+ G ID I + +YKT E + + QL Y Sbjct: 1145 PELLERQEEEEELLIVQGIIDVYFEEPDGIVVVDYKTDR--AASREELAERYEKQLRYYG 1202 Query: 909 KILKDSYPNKSLVCLLIY 926 ++L+ K + +IY Sbjct: 1203 EVLERL-TGKRVKEKIIY 1219 >gi|148989182|ref|ZP_01820572.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73] gi|147925405|gb|EDK76483.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73] Length = 1034 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 162/1019 (15%), Positives = 338/1019 (33%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 58 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIDSLNQESDSQAYQAVLARV 117 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 118 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 177 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK + Y + K++ +F D+ T ++L+ +R + + + Sbjct: 178 ELAKTFQTFMSHFVEAYRQCKRQENAFEFTDISHYTIEILENFP---QVRESYQERFHEV 234 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 235 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 283 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + QK +I L +FRS++++L+ + VF + + + + + Sbjct: 284 FQRYAQ----NPQKGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 339 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 340 NTKLTPDPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 390 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 391 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 438 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 439 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 498 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 499 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 558 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 559 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 618 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 619 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 678 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 679 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 738 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 739 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 798 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 799 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 858 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 859 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 915 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 916 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 975 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++YE+ L +Y +++ LI + + +V ++ Sbjct: 976 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1032 >gi|154485117|ref|ZP_02027565.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560] gi|149734070|gb|EDM50189.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560] Length = 1220 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 152/1014 (14%), Positives = 327/1014 (32%), Gaps = 160/1014 (15%) Query: 43 NPTILKKAQTLQQASQTQCIEERFSLLSSFFLT-----QKFTPQKNIITQEINKKSPDLK 97 + LQ+ ++++ S L + T + +K + I + Sbjct: 245 AKALTPIIDKLQEITESRTYSAMQSELQNIPSTRVSGKKDCNERKKEQVKAIKNDATKAI 304 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 + L Q + + + S L +E K++ ++DF D Sbjct: 305 KDLTTKQFNLTLNQVFESICETKSSVEYIGKLTLEFMKRLKEQKEEKGIMDFNDQAFFAL 364 Query: 158 DLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212 +L + D V + + + I+IDE QD+++IQ ++ ++T+ F Sbjct: 365 HILNEYDKDGNLVPSETAKNMATQFKEIMIDEYQDSNIIQEAILSAITKGF--------G 416 Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272 +F VGD KQSIY F AEPK L + + K I L +FRS +++ Sbjct: 417 INNMFMVGDVKQSIYRFRNAEPKLFLEKYNSFSDDPSADSVK---IVLDKNFRSRREVIE 473 Query: 273 VVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 V+ +F + G+ + + + + V + + Sbjct: 474 SVNFLFDFVMHEEVGGIDYKNGNGLVLGADYDEPPAGQDNLTEFVMVEGGDKSDE----- 528 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDT----IFSNGKKRVIQAKDILVLVRKRKDT 386 A +A I + +T R ++ DI++L+R KD Sbjct: 529 ---------------AAYVARKIKEITNPETGLKITEKGKDMRPVRYGDIVILLRSMKDN 573 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 + R + I V + + + + + I + D+ +L SP+F Sbjct: 574 S---DIYREQLENNGIPVFAESKTGYYKTMEVMTITNMLSIIDNPRQDIPLAAVLTSPMF 630 Query: 447 NFSEDDIFKICTQRHETETVYEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPH 501 F + + I T+ E+ Y+ ++++ ++ + + + ++ + + + Sbjct: 631 GFDSNQLAIIKTEN-VCESFYDCVEQYSLSGSDVELRTRLTEFLNTLTKFRNMVPYTTVY 689 Query: 502 DFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560 D +L G + + + + ++ SY L + +E+ Sbjct: 690 DLINTLLDETGYAFYIRSMPGGKKRLLNIQALKEKAVAYDETSYKGLFNFLRYIEKIQYL 749 Query: 561 IKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 K N N VRIM++H +KGL+ PVVFL +T + + + N Sbjct: 750 AKDDGEASTVNENDNIVRIMSIHKSKGLQFPVVFLCNTNGTSKNEANQ--LVSGADGNIG 807 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 ++K + + + K+ E R+LYV +TRA ++L I + ++ Sbjct: 808 IDCINNKLKTKQTPLLKTYIRMSNKEEDVAETLRILYVALTRAKEKLYITGLVKNAEKQI 867 Query: 676 SNQRTW-------------------YDMVYDSFHNDERVKKIKLTNSINK---------- 706 + +++ + ++ ++ + Sbjct: 868 GEFESQIYDNSELMLYNDVIGAKTIMELIGKTIGRNKAFDCVRTDKDATECGNPLYDKDS 927 Query: 707 ------DEWIAYEWSTHHPENTPLEREETI---------KQLMDEQKIPKKLFSPIKNDI 751 +E + T ++ET+ K+ +K+ ++ Sbjct: 928 FIKVKVEEQPDVILGLAAEDITDSIKKETMLMEMKQLANKENTSIEKLFQRFQFQYPYIE 987 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFN------------------------------ 781 + S + K ++ + F Sbjct: 988 DITLHSKASVTEIKKQSQGMEQEEEQDAFQAFGEEVELPEIIPDFEKEDIDEPQYLTGAM 1047 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKN-LLLSITRLLENPMMT 838 RG H++ +++ E + + +A L + + I ++ + Sbjct: 1048 RGTAYHRIFELLDMELEEYNQETVKKMIDGFVDAGLIDRMGAASVMRKDIIDFTKSDLFR 1107 Query: 839 TAMSC----DSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTH 886 Y E + K+ +II G ID + I +YKT Sbjct: 1108 RMKKAYANNQLYREQHFLMGVPACEINSNTTSKETMIIQGIIDLCFVENDKYVIVDYKTD 1167 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS----LVCLLIY-VSEPKVFII 935 +E + + QL Y+ ++ ++ + ++IY V + I Sbjct: 1168 KV--DTMEELVERYHVQLECYKLAIEQILGSEPGVNKVSEMIIYSVHLGQQITI 1219 >gi|148985758|ref|ZP_01818886.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71] gi|147922062|gb|EDK73185.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71] gi|301800092|emb|CBW32693.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae OXC141] Length = 1216 Score = 368 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 162/1021 (15%), Positives = 335/1021 (32%), Gaps = 143/1021 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEICSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGRLILLKENFRSSSEVLSTTNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ + K + + + I P + PS I + Sbjct: 981 QSDTIKEALKMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV--SEPKVFI 934 I +F+YKT + E + + QL++YE+ L +Y +++ LI + E +V Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEAQVVK 1215 Query: 935 I 935 + Sbjct: 1216 V 1216 >gi|307708679|ref|ZP_07645142.1| recombination helicase AddA [Streptococcus mitis NCTC 12261] gi|307615253|gb|EFN94463.1| recombination helicase AddA [Streptococcus mitis NCTC 12261] Length = 1216 Score = 368 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 162/1019 (15%), Positives = 331/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F + N + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLGNDAKEFAKAPYLENVQLILDEIGSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y E K++ +F D+ T ++L+K R + + Sbjct: 360 ELAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILEKFPQG---REAYQDRFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + ++ +I L +FRS++++L+ + VF + + + + + + Sbjct: 466 FQRYAQD----SKEGKLILLKENFRSSSEVLSATNDVFKRLMDQEVGEINYDSMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHKE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KSVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVQENLYEKLVNAQKQ 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + A+ S +D I + + G Sbjct: 681 VASQKNLIHTDLTEKLNQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSR 628 KGLE P VF+++ + ++ + + Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKMETGAVEAHYPKTIKLSIP 860 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + + L+ ++ E RLLYV MTRA ++ + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKIYLVGKGSREKLESKEYPATKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D + E P Sbjct: 921 NTRLQARNFQDWIWAISKVFAKDHLNFSYRFVGEDQLTREAIGELENKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI----------------------- 762 + ETIK+ ++ K + + + I P + PS I Sbjct: 981 QSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVD 1040 Query: 763 -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + S G H+L+Q I +R + T Sbjct: 1041 KKISFELPDFSTKEKVTGAEIGSATHELMQRID---LSQRPTLASLTETLKHVQTSPAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + +S Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLAKILAFFDTALGQEILSNTNHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYED 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++Y + L +Y +++ LI + + +V ++ Sbjct: 1158 RIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIDKYLILLGKDEVQVV 1214 >gi|330684454|gb|EGG96177.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU121] Length = 1220 Score = 367 bits (942), Expect = 5e-99, Method: Composition-based stats. Identities = 158/949 (16%), Positives = 305/949 (32%), Gaps = 131/949 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + K D+ K+K + + + + K + + + K+ V Sbjct: 303 KASYDKYKDMINKVKNDYFSRTPEELKRDMQLLAPRVNYLSEIVKDVIHDFSKHKRSRNV 362 Query: 147 LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 LDF D +L D + I Q + IL+DE QDT+ +Q +++ + Sbjct: 363 LDFADYEHFALQILTNEDGTPSAIAEMYRQHFSEILVDEYQDTNRVQEKILSCI------ 416 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 K S LF VGD KQSIY F A+P + + AG I+L +FR Sbjct: 417 -KTGDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFNVDGYEAG---MRIDLSQNFR 472 Query: 266 STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 S ++L+ + +F E ++ D + + + V+L V + ++ Sbjct: 473 SRKEVLSTTNYLFKHMMDEAVGEITYDDAAQLYYGAPFDEVNHNVELRTLVEASSEN--- 529 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381 + + A I + +++ ++ R KDI++L R Sbjct: 530 -------------SKLTGTEQEANYIVEQVKDILEHRKVYDMKTNTYRPATYKDIVILER 576 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + D I N R + ++ +++ R + + D+ V ++ Sbjct: 577 SYGQARN----LQQAFKDNDIPFHVNSREGYFEQTEVRLILSFLRTVDNPLQDIYLVGLM 632 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIA 495 +S ++ F+ED++ I + Y+ IQ++ ++ K + + I + Sbjct: 633 RSVIYQFTEDELANIRVFSPNDDYFYQSIQQYIKNDMANKKLVTKLKRFLADIQHYQDYS 692 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 Q + Q F G L N + E +S+ L + I + Sbjct: 693 QRYPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFI 752 Query: 555 EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ K N N VR+MT+H++KGLE P V + + +++ + Sbjct: 753 DELIDRGKDFGEENIVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKRFNKNDLSRQVVLN 812 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + +K E RL+YV +TRA +QLI+ Sbjct: 813 QKYGLGMDYFDVNEDIAYPSLSSVAYKAINEKEMISEEMRLIYVALTRAKEQLILIGRVK 872 Query: 670 TSNE--------------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 E T + + + K ++I + + Sbjct: 873 DEKELGKLERLPISGNHLAVNERLTAPTPFTMIYSILAKYQSSSITNDQKFESNIEQLDS 932 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPK-------------------KLFSPIKND 750 + +N ET+ + + + P + D Sbjct: 933 NVKPRVNLYVDNFEDISTETLVSESELRTVEDIENDQSGNDDIKAKIKEKLIFEYPYQKD 992 Query: 751 INEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFNRGLIIH 787 I +P + S + T + S + G ++H Sbjct: 993 IEKPSKQSVSELKRQLETEESGTNYDRVRQYRIGVSTYERPKFLSQQGKRKANEVGTLMH 1052 Query: 788 KLLQVIFT----LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-S 842 ++Q + L E + +I N AKE I +++ + + Sbjct: 1053 TVMQHLPFKMSRLTETELDEYIDRLIETNIIESDAKE-DIRFKEIMSFIQSDLYMNIANA 1111 Query: 843 CDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQE 892 Y E+ +I + + II G ID I +S+ + +YKT Sbjct: 1112 DQVYRELPFVVNQSKVDQIELEDEGVSIIQGMIDLIYVSEGQYYFVDYKTDAFNRRKGLT 1171 Query: 893 IEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 E + + Q+ Y L+ K + L + + I Sbjct: 1172 DEEIGQQLKDKYQIQMKYYRNTLETILQTK-VKGYLYFFKFGML-EIDD 1218 >gi|238854633|ref|ZP_04644963.1| recombination helicase AddA [Lactobacillus jensenii 269-3] gi|260664424|ref|ZP_05865276.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US] gi|282932976|ref|ZP_06338373.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|238832423|gb|EEQ24730.1| recombination helicase AddA [Lactobacillus jensenii 269-3] gi|260561489|gb|EEX27461.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US] gi|281303011|gb|EFA95216.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] Length = 1186 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 163/1022 (15%), Positives = 328/1022 (32%), Gaps = 149/1022 (14%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + + + + I D P+ + +++ K + + K+ + + + ++ Sbjct: 220 IEMTDKVDKILAD----PFNEATELEKIM-----KDFLSFSKRLAQAETSLENGSFDQIR 270 Query: 67 SLLSSFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 + L T+ P+K+ ++I + L + + +++ + F + T Sbjct: 271 ASLQDCQFTEN--PRKSPKWDEDILDRYASLSQVRTELREQVKSLFAAFFVVDNEEQTAV 328 Query: 126 SLT---------LAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-ID 174 LA+ L A + K+K +LD+ D+ +L + + + Sbjct: 329 MKQSSMIIKAVCLAEKELIATFNSLKRKQNLLDYSDMEQLAYQILTSDTTAGHLARQFYQ 388 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + IL+DE QD + +Q +I+ + + LF VGD KQSIY F A+P Sbjct: 389 NKFTEILVDEYQDINKLQERIIQLMKCE----------HNNLFMVGDVKQSIYGFRQADP 438 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292 L + + + I L +FRST + +V+K+F+ + G+ + Sbjct: 439 SLFLNKYQKFAED-----SSSKRIVLADNFRSTKPVTKIVNKLFNPLLTPDFGGIDYQNE 493 Query: 293 TTIRHRSSR--IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 ++ +S +L + S S + + Sbjct: 494 GQLKFGASYYPDNLPAASELLFYDK---------------------SEASDESNQIQLVI 532 Query: 351 YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I +I + G KR I+ DI +L R R I + + Sbjct: 533 NRIKQLIDEGFEVFDVKTGLKRPIEFSDIAILTRSRSQNLD----LLKQFAQNNIPLFVS 588 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 D + +M+ + + + + D+ V +L+SP+FNF E D+ KI + + Y Sbjct: 589 DVANYFQTFELTIIMSYLKIVDNPDQDIPLVAVLRSPIFNFKEPDLAKI-RIKSPNMSFY 647 Query: 468 EYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + + + + + + +L A + I + S G Sbjct: 648 SALTNYVSENDELSKRIKDFLNQLADLRDFALNHRISETIWSIYARTSLLEIVTSLPNGK 707 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVH 578 + L+ E + L + I+ + + N V++MT+H Sbjct: 708 QRRINLENLYERANSYESAGFKGLYQFINFINRMRKNQKDLAQPLLSKEAENSVQLMTIH 767 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF + Q I D GI + + + + + Sbjct: 768 ASKGLEFPVVFYLGLEHQFQKSDLSGNYII---SGDSCGITVVRSDWRIDSLVKAMGNVT 824 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIIC-----------------------------KHSN 669 +K EE R++YV +TRA +LI+ Sbjct: 825 KQKQLLEEEARIMYVAVTRARQKLILVTNFKDFAKDTDNLKASLANNGSLTLTSELAAQK 884 Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH------------ 717 ++ + + V+ + + D + Sbjct: 885 PADLLLPQLDLAHHFINQITDLQPEVESKQDFLVVTGDATVVELAKETNMDEKGEVSEFI 944 Query: 718 -------HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--IDTKGKT 768 + P + T ++ K PI +++ + + + Sbjct: 945 VKNVKKLYEATYPFKDATTTTAYQSVSELKKAFNDPIDDELANSRFIKSANRYLQDIDTR 1004 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 G +H +LQ + I ++ KL + I Sbjct: 1005 PGFLFEDGFTGAEIGTAMHLILQFFDYQGNTSVEAEIERLV-QSGKLNSKIVPHLPIAEI 1063 Query: 829 TRLLENPMMTTAMSC--DSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQN 877 T + + + EVS S + P I++ G +D + Sbjct: 1064 TWFVNSDFAKKFWNEPGKLKREVSFSSLLPAADIFTPFSDPNAKILVHGTVDGYYLDDDG 1123 Query: 878 IFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 I +F+YKT + ++ I + QL +YE+ L K LI + K+ Sbjct: 1124 IILFDYKTDYVNKNQLAQSINKIKDKYTGQLRLYERALNQLGQEKVKSKYLILLDAQKIV 1183 Query: 934 II 935 + Sbjct: 1184 EV 1185 >gi|199598402|ref|ZP_03211821.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus rhamnosus HN001] gi|258508491|ref|YP_003171242.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus GG] gi|199590721|gb|EDY98808.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus rhamnosus HN001] gi|257148418|emb|CAR87391.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus GG] gi|259649801|dbj|BAI41963.1| ATP-dependent exonuclease subunit A [Lactobacillus rhamnosus GG] Length = 1236 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 146/1043 (13%), Positives = 295/1043 (28%), Gaps = 133/1043 (12%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-----LKKAQTLQQASQTQC- 61 + +WP ++ + ++ + E N + L Sbjct: 205 APEAWAATFTHQIWPRTKRKLMQVITTLTQADELANRLPNPVWHQQITADLNPLQSLLDN 264 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK--- 118 + + + + F ++ ++ LK + K+ +D KI Sbjct: 265 PKPSYEAVRGVLVQHDFLAWSR-ASKGLDDDDKALKNEAKQQRDAAKKIWQDQLAPDFAL 323 Query: 119 -----------MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165 + +A K V D+ D+ N +L+ Sbjct: 324 TSEQITDLLHTVQPMMTMLTEVALTFLDALTAEKAVRHVQDYSDIAHNALRILQQKDPQT 383 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 A I + +++DE QD S +Q + L F VGD KQS Sbjct: 384 GAPIADNYRASFDEVMVDEYQDISPLQEAL---LAAVSTTDPGDR------FMVGDVKQS 434 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284 IY F A+P+ +++ + I L +FRST ++L + +FS + Sbjct: 435 IYGFRLADPQLFIQKYQAF-ASHPETPTAPERIILAENFRSTKNVLAFTNLIFSQIMDPE 493 Query: 285 -QGLSEDSTTTIRHRSSRIGQ--VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 L+ D +++ + G + + D W++ + Sbjct: 494 VGDLAYDDNAALKYGALDYGDCHPAVKVMLYSKATSDDDDETNATSDWSATDEDDEPLDV 553 Query: 342 ASILARRIAYTISNMI----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 A+ + + I ++ +N + R I+ +DI +L R+ LI Sbjct: 554 ATGQTQMVIAEIQRLVQDPDAQLWDRANQQYRRIRYRDITLLTRQTTQNSLIQTQFAA-- 611 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 + + D + ++AL + I + + D+ V +L+SP+ S D + I Sbjct: 612 --AGVPLFVADTKNFFKTTELMVMLALLKIIDNPKQDIPLVAVLRSPIVGLSADQLALIR 669 Query: 458 TQRHETETVYEYIQKFANCGISKFQH--------VIKYIHELIHIAQFCSPHDFFTLILG 509 + + + ++ +A+ I Sbjct: 670 LAAKQVPYYDAVTAFLTGTPTTPLAKRTHATLTTFLDQLNHFRDLARENDLVTLLWAIYQ 729 Query: 510 AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKR 563 G++ L ++ E + L I + Sbjct: 730 ETGFLDYVGGTPGGSQRQANLLALVDRARTYESGGFKGLFAFIHFITLMQKQDQDLATPA 789 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 +++ V++MT+H +KGLE PVVF++ T F+ + I+ Sbjct: 790 QVDPDNDAVKLMTIHKSKGLEFPVVFVLQTNKH-FNRRDQSGPAILTKNGIGIKWLDPQT 848 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 + + + T E RLLYV +TRA +L + + + + S +T Sbjct: 849 RVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGQQLTSADKTVAK 908 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP------------------------ 719 + + + N +WI H Sbjct: 909 WAKAAEGEQLTLAPQIRGAATNYLDWIGPALIRHPQVKGLTETTVKPALVADPTEFSIAI 968 Query: 720 -------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + E P + + S I Sbjct: 969 ETHPQIKVGAATKTPAKTDAPAIELTGWFATQYPFQAATTTAGFQSVSEIKRAFDDPDTM 1028 Query: 773 LLSDNQ--------------------------TFNRGLIIHKLLQVIFTLPEHKR--KNF 804 L G H LLQ++ Sbjct: 1029 ELVSADRFLGPKPPLHDLGAPAFLTETYGGGNAAAIGTATHLLLQLVDLTKPITLNSLEA 1088 Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINC----- 857 + + + + L ++ R + + EV S + Sbjct: 1089 LRHHLITTGVMPTEVAKRIDLTALVRFFATDLGQLLQAKPQQVQREVPFSMLLPANQLFE 1148 Query: 858 -----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912 P +D+++ G +D + +F+YKT H + + + QL++Y + L Sbjct: 1149 ILQNDPGEDVLVHGIMDGYVTEADGVTLFDYKTDHEP--DPAKLVARYRGQLNLYAQALT 1206 Query: 913 DSYPNKSLVCLLIYVSEPKVFII 935 P L+ + + + Sbjct: 1207 QLQPKPVTHRYLVLLRTGTIVDL 1229 >gi|218134064|ref|ZP_03462868.1| hypothetical protein BACPEC_01954 [Bacteroides pectinophilus ATCC 43243] gi|217991439|gb|EEC57445.1| hypothetical protein BACPEC_01954 [Bacteroides pectinophilus ATCC 43243] Length = 1022 Score = 366 bits (940), Expect = 7e-99, Method: Composition-based stats. Identities = 157/1010 (15%), Positives = 316/1010 (31%), Gaps = 133/1010 (13%) Query: 28 VSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82 + + + + P IL + + T+ I + + T + Sbjct: 25 REKFRRLLDICKDVAGPDMYIDNILSDLEGMDMLLNTENISQWMETAARIQFTDLSRKRG 84 Query: 83 NIITQE----INKKSPDLKEKLKKSQDEFIKIRDR---FNTYKMFKSTLASLTLAKYLNA 135 + + + + ++ +K +D + +TLA Sbjct: 85 SGVDPDMKELVRNSRTKYRDSFRKLRDRLCSMSVEEYLRELSANGAPLRMLITLASEYMD 144 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKR----DVSAWIRYKIDQEINHILIDEVQDTSLI 191 + AKK+ ++DF D+ LL K D + + ILIDE QD++++ Sbjct: 145 AVDAAKKEKNIIDFNDIEHMACSLLVKHENDTDEYTQLADDLASYYGEILIDEYQDSNML 204 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q ++ +++ SS LF VGD KQSIY F A P+ L + Sbjct: 205 QEMILTAVSRGRL-----DSSRNNLFMVGDVKQSIYKFRLARPELFLDKYVKYPDA---- 255 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +IEL +FRS + +L V+ VF + + + T +R G Sbjct: 256 -DGCEVIELRNNFRSRSQVLYSVNSVFEKIMHRECGGIEYTEDVRLN------PGLEFAQ 308 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNG 366 D++ + + +D + R IA I +I DT G Sbjct: 309 RTDSGMMDNRTSIRLADLNIQYDEDDVNTPRECEGRLIASIIKEVIDEDTGMPVYDERLG 368 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 R + DI+VL R + + I D I+ ++ L Sbjct: 369 TYRKAEYGDIVVLTRSLDGWA---DVFADELMNAGIPAAAQSSSGYYDTYEIEQVLNLLA 425 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------- 479 I + D+ + S +D+ + + +YE + ++ N Sbjct: 426 VIDNPAQDIPLAAVALSYFGTLDVNDLALVKSAYP-DARLYESMNRYLNSHADNQDEICA 484 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLR 538 K +++ I + + + ++ I+ + G+ LD + Sbjct: 485 KINNLLTMIEGYRTKSVYLTINELIWKIIYDTGFYDYVGMMPAGSMRQQNLDMLCDKAES 544 Query: 539 NEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + SY L + +E+ + +++N V+IM++H +KGLE P+V + Sbjct: 545 YARTSYHGLFNFLRYIEKIRKYNLDSQSGASDMSDNNAVQIMSIHKSKGLEFPIVIVAGI 604 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + + ++ + + I + ++K + S + L E R+LYV Sbjct: 605 AKKFNNMDARGRVVVDSDIGVGADIIDTVMRTKVSTPVKSAVEMKLVDDNLAEEMRILYV 664 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ--------------RTWYDMVYDSFHNDE------ 693 MTRA ++LI+ ++ + ++ DM+ D Sbjct: 665 AMTRAKEKLIMTGTLKNYDKMCAKWKTTDVSTFDGIQGCSSYMDMIMPVACGDAVNFDIS 724 Query: 694 --RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK-------------------Q 732 + K + N D+ + + +I+ + Sbjct: 725 VTEINKEPDEDEYNGDKHDIMAHNAADIHEAAKKGAVSIEPYRYGYAVTMKTKLSVSEIK 784 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL--------LSDNQTFNRGL 784 L + ++ + + + S +G D RG Sbjct: 785 LHEYEEQEEFTRDVLPELNAANNGKSGSESGIEGVQPAYEPCVPQFISKKEDVAPAERGT 844 Query: 785 IIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN---PMMT 838 H++++ + + +I +N + N + + Sbjct: 845 AFHRVMECLDYNRCGSVDDIRGYIDELVDRNMMTRRQADAVN-PQKVYDFCNSSIGARTA 903 Query: 839 TAMSCDS-YSEVSVSGKINC--------------------PKKDIIISGRIDQISISQQN 877 A Y E I ++ ++I G ID Sbjct: 904 EAFRAGRLYREQPFVMGIPAGSIKIYQELADRYNVSYSLLDEETVLIQGVIDMYFEENGK 963 Query: 878 IFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + +YKT E + + QL +Y + L+ + + LIY Sbjct: 964 VVLVDYKTDRVSGSNAEKILRDHYTIQLELYSEALERAL-GMEVSEKLIY 1012 >gi|114566673|ref|YP_753827.1| ATP-dependent exoDNAse subunit beta [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318286|sp|Q0AXU8|ADDA_SYNWW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|114337608|gb|ABI68456.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1236 Score = 366 bits (940), Expect = 7e-99, Method: Composition-based stats. Identities = 161/1052 (15%), Positives = 355/1052 (33%), Gaps = 153/1052 (14%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEE 64 + + + +N+ + LS + G P K + L +A+ Sbjct: 209 ASELSQQIKIELSAAQDILNQALKLSNKAGGPRGYLEAIESDQKWVELLLKAADQGLPV- 267 Query: 65 RFSLLSSFFLTQKFTPQKNI------ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 +S L T+ +++ + + +S + + + + + Sbjct: 268 LYSCLQQLSFTRLGRVSRDVDENLKNQVKILRDESKKILNAINSLLGR-DPLEYLQDLNE 326 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 ++ + + Y+E K++ ++DF DL +L V+ + Sbjct: 327 IYSLMKYLGEIIQSFAEIYQEKKREKGIVDFNDLEHLALQILSNEAVARE----YRDYYS 382 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 ++ IDE QD++L+Q ++ + ++ LF VGD KQSIY F A+P L Sbjct: 383 YLFIDEYQDSNLVQETILNYIKKED-----------NLFMVGDVKQSIYRFRLADPSLFL 431 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIR 296 +++ G ++L +FRS +IL V+ +F E + D + + Sbjct: 432 EKQKSYP---LQDGSVNRRVDLNKNFRSHPEILNAVNYIFRHLMSEELGEIDYDEKSYLY 488 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ-----------------------------E 327 + ++ ++ + + + N + E Sbjct: 489 PGLNTGQELKYQEIDKASSQEGKEKENTAKRVEICILENNPDLITKLEENETEEREIPGE 548 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKRKDT 386 + + + + + + I A IA I +I D R I+ +D+++L+R +++ Sbjct: 549 AENDFIERIIEMDNTEIEALLIAQKIRQLIQEDIYDPELQCMRKIEYRDMVILLRATRNS 608 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 I + I V + D L + + L R I ++ D++ + +++SP+ Sbjct: 609 AGI---FMEQLSAEGIPVYADASSGYFDTLELNLFINLLRLIDNKRQDIALLSVMRSPIG 665 Query: 447 NFSEDDIFK-----ICTQRHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQF 497 FS DD K I + + + YE ++ + + I+ + E ++ Sbjct: 666 GFSIDDFIKIRTKLIPRREKQPYSFYEAMEFYMEDNNDDLKDRLVFFIQRLKEWELESRI 725 Query: 498 CSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556 + +F + G + L L+ +++S+ L I +E+ Sbjct: 726 MALDEFMGKLFMDTGYYYYAGAMPGGGQRQANLRILLHRAREFQKSSFKGLFSFIKYIEK 785 Query: 557 Y-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 N N VRIM++H +KGLE PVV L G + + + Sbjct: 786 IKSSGSDMGNACIIGENDNVVRIMSIHKSKGLEFPVVILGGLGKNFNIRDSNENVLLHRK 845 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT- 670 L P ++ + +K E R+LYV TR ++LI+ + Sbjct: 846 LGIGPRYINTQLRTYHDTIARLAIKNRIKLENLAEEMRILYVACTRPQEKLIMVGTTRQL 905 Query: 671 ------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 S + + ++ + + + ++ + D I +E + Sbjct: 906 ESAWRRWSQPVNSYNQSRARSFLDWLIPIIMRHKKEGQYLREIAGGDWDREILWEDESRW 965 Query: 719 PENTPLEREETIKQLMDEQKIPKK------------------------LFSPIKNDINEP 754 + T +++ +++ + P + N P Sbjct: 966 KVKLISPWQLTAEEIRKKEEKYEWERLLEQGGYSCPSAESEEIIKRLNWKYPYQEAENIP 1025 Query: 755 YILNPSTIDTKGKTNLESLLS-------------------DNQTFNRGLIIHKLLQVIFT 795 L+ S + LE + ++G I+H ++Q I Sbjct: 1026 AKLSVSQVSQISSGYLEDGAADTFLTRVPAFLSGEKDKKTRLSPADKGSIVHLVMQNI-D 1084 Query: 796 LPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-SEVSV 851 R++ I + L + + I R + + + E Sbjct: 1085 YRRVSREDSINQQLGEMVEREILTSEQLAVVEVNKIWRFFQTKLGQRVLQAKWLFREAPF 1144 Query: 852 SGKINCPK--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903 + I + ++++I G ID ++I + ++K+ + E I + Q Sbjct: 1145 NLLIAASEVFPALESQEELLIQGIIDLYFYEGEDIVLLDFKSDIVHHKSEEEILAPYRVQ 1204 Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 L +Y++ L++ ++ L + + + Sbjct: 1205 LKLYKRALENITDHRVKESYLYFFDLNRAIRV 1236 >gi|322376656|ref|ZP_08051149.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334] gi|321282463|gb|EFX59470.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334] Length = 1216 Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats. Identities = 160/1019 (15%), Positives = 329/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + +Q + + L+ Sbjct: 240 EQIKQTLWDLESFFRYHLDNDAKEFPKAAYLENVQLILDEIGSLNQESDSQAYQTALARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VEISKEKNGRALTNASRKADLKPLTDAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y E K++ +F D+ T ++L+K +R + + Sbjct: 360 ELAKTFQAFMGDFVEAYRERKRQENTFEFADISHYTIEILEKFP---QVREAYQDRFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQD----SQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + + + + E+ + R + I + Sbjct: 522 NTKLTPNPDNKAEFLLYDKDDTGEE--------EEVQAETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVSFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKIQENLYDKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 VTSQKNLIHTALVEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQILEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D + E P Sbjct: 921 NTRLQARNFQDWIWAISKVFAKDHLNFSYRFVGEDQLTREDIGELENKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + ETIK+ ++ K + + + I P + PS I + Sbjct: 981 QSETIKEALEMLKEVEVYNTLHQAAIELPSVQTPSQIKKFYEPVMDMEGVEIASRAQSVD 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I R + T Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRID---LSHRPTLASLTETLKQVQTSPAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLAKILAFFDTALGQEILANTDHLYREQPFSMLKRDPKSQEDFVVRGILDGYLLYED 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + + + + +QLS+Y + L +Y +++ LI + + +V ++ Sbjct: 1158 KIVLFDYKTDRY--DKPSQLIDRYRSQLSLYGEALSRAYSIENIEKYLILLGKNEVQVV 1214 >gi|307267167|ref|ZP_07548675.1| recombination helicase AddA [Thermoanaerobacter wiegelii Rt8.B1] gi|306917818|gb|EFN48084.1| recombination helicase AddA [Thermoanaerobacter wiegelii Rt8.B1] Length = 859 Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats. Identities = 135/860 (15%), Positives = 281/860 (32%), Gaps = 119/860 (13%) Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++ I +DE QD++LIQ ++ ++ + F VGD KQS Sbjct: 12 PSEAALMYREKFQEIFVDEYQDSNLIQEVILSTIAREDT---------PNRFMVGDVKQS 62 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A P + + + I L +FRS I+ V+ +F + Sbjct: 63 IYRFRQANPHIFFEKYNTYSSKEEDKN---KKILLYKNFRSRPQIIDAVNFIFKKIMSKN 119 Query: 286 GLSEDSTTTIRHR--------SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 D T + G V++ + + + ++E + Sbjct: 120 VGEIDYTEEEKLNCGADFGTPPLDAIVGGPVEIHLI---EKNDETPEEEELEVYGEEEEE 176 Query: 338 QESSASILARRIAYTISNMIGTDT-------IFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 + + AR +A I ++ + + R ++ +DI++L+R T Sbjct: 177 IIDNIQVEARVVAQRIKELVTQNEKNTFMVYDKNLKNYRPVEYRDIVILLRA---TERWA 233 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + I + + IK +++L + I + D+ + +L+SP+F+F+ Sbjct: 234 PVFLEEFINVGIPAFADTGTGYFETTEIKTIISLLQVIDNPMQDIPLLAVLRSPIFSFTP 293 Query: 451 DDIFKICTQRHETETVYEYIQ--KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 +++ I + + + K + ++ + + A + +F + Sbjct: 294 EELIDIRLEEPNRAIYEALKKVSQREAELGQKAKSFLESLKKWQEKAIYMPVDEFLWYLY 353 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E+ S+ L I+ + Sbjct: 354 QDTGYYAYVGAMPQGVQRQANLRILFERAKQYEETSFKGLFNFINFINRLKVSSGDMGSA 413 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV + G Q + + L P + Sbjct: 414 KIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQFNLKDLSQSVLYHHLLGLGPEFVDFK 473 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---- 678 + + + + +K + E R+LYV +TRA ++LI+ EK Sbjct: 474 RRISYPSIVKEAIKNKIKLESLSEEMRVLYVALTRAKEKLILVGSVKDIKEKVKKWCNIA 533 Query: 679 --------------RTWYDMVYDSFHNDERVKKIKLTNSIN------------------- 705 +++ D + + +K ++ + Sbjct: 534 MLESKVPEYEILKGKSYIDWIGPAVIKHADLKPLRDFAQVQYVAVEEDSSQWQVRIWNKK 593 Query: 706 ---------KDEWIAYEWSTHHPENTPLER--EETIKQLMDEQKIPKKLFSPIKNDINEP 754 ++E + + ++P +E ++L K P K + E Sbjct: 594 DVIFDKKQVEEETNLLQRLENLDLDSPSSEFYDEVTRRLNYVYPHEKACHLPAKLSVTEI 653 Query: 755 YILNPSTI-----------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHK 800 + + +G+ +H ++Q + L Sbjct: 654 KRILNEEVIDEDTTSIFEKTVLKIPAFLEKKKGLTAAEKGIAMHLVMQKLDLNGDLSVEG 713 Query: 801 RKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKI--- 855 K I + + + + K + + I + + S + EV KI Sbjct: 714 IKKQIKNMVDRE--ILTEAQAKEIDIRRIEEFFRASLGRRMLSSQNVKREVPFHIKIKST 771 Query: 856 --------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 + I + G ID + I + +YKT + + +E I + Q+ +Y Sbjct: 772 EVYKDLPEEYENEFIAVQGIIDCFFEEEGKIILIDYKTDYVTEEMMEEIKEKYKVQIDLY 831 Query: 908 EKILKDSYPNKSLVCLLIYV 927 K L+ K + IY+ Sbjct: 832 AKALEKI-TGKRVKEKYIYL 850 >gi|161507624|ref|YP_001577578.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC 4571] gi|251764556|sp|A8YVK0|ADDA_LACH4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|160348613|gb|ABX27287.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC 4571] Length = 1204 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 173/995 (17%), Positives = 323/995 (32%), Gaps = 123/995 (12%) Query: 33 KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92 K ++ E+ +Q + +++ LL S T F K +++ + Sbjct: 240 KELAKVKESFTLFAQNLNNFVQAVKEDDDYDKQRELLRSCVFTINFRKSKKW-DEDLLEF 298 Query: 93 SPDLKEKLKKSQDEFIKI---------RDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKK 142 +++ +++ + +++ + + + +++ A+ L + + K+ Sbjct: 299 YNEIQSLKDEAKSQVFDTFTSFYAVTEKEQIKIMQESQKIVTAISTAEIKLIERFNQLKR 358 Query: 143 KNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +LD+ D+ +L + S R + ILIDE QD + +Q +I+ + Sbjct: 359 NENLLDYSDMEQLAYQILSQDTSSSQMARDFYQNKFKEILIDEYQDINALQERIIQQIKS 418 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + TLF VGD KQSIY F AEP L++ + I L Sbjct: 419 E---------KKNTLFMVGDVKQSIYGFRQAEPSLFLQKYHQFAEDENEHE---ERILLS 466 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 +FRST + V+ VF + D G + + + Q Sbjct: 467 DNFRSTEPVTQTVNAVFKSILSTDFGGIDYQKE-----------GQLIFGAKYYPKSLPQ 515 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILV 378 + + + + + I + + GK R ++ DI + Sbjct: 516 ASEVIVHEKKNNNEKSENEIDFSEIQMVLARIKQLEDEHVQIFDSNTGKMRDMEYSDIAI 575 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R R D I + D + +M + I + + D+ V Sbjct: 576 LTRSRSD----NLEIMQEFAKQDIPLFVTDAENYFQTFELTVMMNYLKIIDNPDQDIPLV 631 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQ 496 +L+SPLFNF E ++ KI + + K ++ + + EL A Sbjct: 632 TVLRSPLFNFDEKELAKIRIKSKNSNFYSALTSYVGTNDVLSKKCKNFLNQLAELRSFAT 691 Query: 497 FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 + I + + G + L+ E + L + I+ ++ Sbjct: 692 THRISELIWSIYERTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFID 751 Query: 556 QY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + N VR+MT+H +KGLE P+VF V I Sbjct: 752 RMRRSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHHYQMRDLNGNYII-- 809 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 +D GI + + + + + K+ EE R+LYV +TRA +LI+ + Sbjct: 810 -NSDSMGITLREQNYRVDSLVKAMGNITKKQQLLEEEARILYVALTRAKQKLILVGDVPS 868 Query: 671 SNEKKSNQRT---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----------- 716 N+K T + + S+ D +A + + Sbjct: 869 FNKKVKEWSTELNHAGQLPLINKLSATSPLSFIGPSLRFDRHVAIKLNDITKSIDQSQKI 928 Query: 717 -------------HHPENTPLEREETIKQLMDEQKIPK--KLFSPIKNDINEPYILNPST 761 E+T + E T K + Q + K + P ++ S Sbjct: 929 LFIDYQDEDTKFIKKDEDTDNQNENTRKSALLTQTVNKLYQFNYPFRDASETTAYQAVSE 988 Query: 762 IDTKGKTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF-T 795 I +++ L ++ G H +LQ T Sbjct: 989 IKKAFNDPIDAELENSHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYT 1048 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVS- 852 + + + KL P I + + EV S Sbjct: 1049 NDSADNLDQEIATLIEQKKLNPDIVSSLNKDQIDWFVHGDFAKDFWKEPTNLKREVDFSS 1108 Query: 853 --------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTH 900 + P I++ G ID +++ I +F+YKT H + IE I + Sbjct: 1109 LLSARTLFKDFSDPDAKILVHGTIDGYFVAKNGIILFDYKTDHVNKTNIDKSIELIKEKY 1168 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL +YE+ L + K + LI + +V + Sbjct: 1169 TGQLRLYEQALNEFSEKKVIGKYLILLDAKQVVEV 1203 >gi|116334819|ref|YP_796346.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus brevis ATCC 367] gi|122268502|sp|Q03NA7|ADDA_LACBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116100166|gb|ABJ65315.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus brevis ATCC 367] Length = 1262 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 160/1042 (15%), Positives = 321/1042 (30%), Gaps = 144/1042 (13%) Query: 29 SDINKYVSLSMETG-------NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81 +D+ +L+ + G +L+ +QQ + + F + + Sbjct: 234 ADLTSAQALANQAGLDKQAAHVTAVLENVAAVQQLVTGDSWNALRAAIQDFAWGRMPAVR 293 Query: 82 KN-----IITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKSTLASLTLAKYL 133 K I + +++L + ++ ++ + + + Sbjct: 294 KTNEDYPIYNELKTTYYDPARKQLDSLKKTYLIQDEQQAMTTIRRSGELVGELSRVVTAF 353 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 Y + K++ VLDF D+ +L + D S + ++ + I++DE QDT+ +Q Sbjct: 354 RTAYRQEKQRRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDEYQDTNGLQ 413 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ ++ E G LF VGD KQSIY F A+P + + A Sbjct: 414 EAILTAIAEPAPQG--------NLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAA-- 463 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LW 311 +I L +FRS ++ + +F + + D T + + TV Sbjct: 464 --GELIVLAENFRSMKNVDDFTNLIFKQLMDRELGEIDYTGAAQLKFGASYYPDTVTSTA 521 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSL-PQESSASILARRIAYTISNMIGTDTIFSN---GK 367 E +V + ++ + D+ ++ + I +I T + + Sbjct: 522 ELLVYLTEDAPESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIADQTPIYDREAKQ 581 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R + DI +L R + +IT R L I VV ND I+ +MAL + Sbjct: 582 VRPMTYGDITLLTPTRTNNLIITDELRRL----GIPVVVNDARNYFKTTEIQIMMALLQI 637 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ-----------KFANC 476 I + D+ +L+SP+ +E+++ + + + + F Sbjct: 638 IDNPYQDIPLAAVLRSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQQA 697 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNF 535 K H ++ + E IAQ I G + L Sbjct: 698 VYQKVSHFLEQLQEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYER 757 Query: 536 TLRNEQNSYSSLQELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 EQ+S+ L + + +E+ A + V +MT+H +KGLE PVVF++ Sbjct: 758 AKSYEQSSFKGLFQFVRFVERLQERDDDLAGAPVQAADDAVSVMTIHGSKGLEFPVVFIM 817 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 D Q + + K+ + + + +++ E R L Sbjct: 818 DASRQFNKQDQQGNYVMSGKTGIGIDYLDPDSRVKAPSLQKLVTAQAISRASLAEEMRKL 877 Query: 652 YVGMTRASDQLIICKHSNTSN---------------------EKKSNQRTWYDMVYDSFH 690 YV +TRA ++ I T +K+ + D + Sbjct: 878 YVALTRAESRVYIVGSHKTQEAAISAWEQAYQSPNLVLNATLREKNTLANYLDWIGMCLV 937 Query: 691 NDE-----------------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 D V + + + + Sbjct: 938 RDPKFAAELRQGTTTFSGLAGDPATFAVHFVTAHDLGPTQGVNETAVDWLQAASETAAKV 997 Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------------------ 769 T ++ P + + S + Sbjct: 998 TTPPVDTEQLHQIMDFRYPHQAATATTAYQSVSEAKRLFEDPDNATIGEYQASATGQVGG 1057 Query: 770 ------------LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKL 815 + + G H +LQ + P R + + L Sbjct: 1058 HRFVTHDFARPDFLQTVREPLATEIGSATHLVLQQLDVTVTPTLDRVQGVIDQLVADQVL 1117 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSG---------KINCPKKDIII 864 + I R + + ++ + EV S +++ Sbjct: 1118 TAEVAQRIQPELILRFFSSSVGQQVLAAPDQLHREVPFSLLMPARSLFQDFQETDSQVLV 1177 Query: 865 SGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 G ID + + +F+YKT H IE I + Q+++Y LK + Sbjct: 1178 HGIIDGYLTTPAGVILFDYKTDHVNAQNQAASIEKIVERYGGQVNLYAAALKQMTGQPIV 1237 Query: 921 VCLLIYVSEPKVFIIPQNKLNK 942 L ++ ++ +P+ ++ + Sbjct: 1238 GQYLYLLAIGELVAVPEQQVRR 1259 >gi|168177782|ref|ZP_02612446.1| recombination helicase AddA [Clostridium botulinum NCTC 2916] gi|182671018|gb|EDT82992.1| recombination helicase AddA [Clostridium botulinum NCTC 2916] Length = 1279 Score = 366 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 158/992 (15%), Positives = 321/992 (32%), Gaps = 150/992 (15%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 + + +++ + +L+ + + + + ++ S A L + Sbjct: 288 KDADKEAKERVKKLRDRVKKRIIELRITLNSYENEFTKKEFIFLYPSMKALSNLVILFDK 347 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSL 190 YE K++ ++DF D+ +L + + I ++ +LIDE QD++L Sbjct: 348 KYEAKKRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALDYRKKFAEVLIDEYQDSNL 407 Query: 191 IQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVGDEKQSIYSFHGA 232 +Q ++ ++ + F VGD KQSIY F A Sbjct: 408 VQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPQICLDIPNRFMVGDVKQSIYRFRQA 467 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P+ L + G K ++L +FRS +++ V+ +F + D T Sbjct: 468 KPEIFLDKYNEYS---EEEGTKNRKVKLFKNFRSRKEVINGVNYLFKQIMSKTIGELDYT 524 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + ++ ++ D + + R +A Sbjct: 525 EEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQLEGRLVAKK 584 Query: 353 ISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 I ++G + GK R +Q +DI++L+R + + I V Sbjct: 585 IQKLVGNNLEGGLKVFDKKLGKYRNLQYRDIVILMRATSNWAPV---FVEELAKEGIPVF 641 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-------- 457 + D IK +++L + I + D+ + +L+SP+ +F++D++ I Sbjct: 642 ADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVNKNITF 701 Query: 458 ----------TQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQ 496 + + ++ Y + + N + I+ + + Sbjct: 702 YECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSI 761 Query: 497 FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554 +F + + + G + L + + SY L I+ + Sbjct: 762 HIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFIN 821 Query: 555 ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + N N VRIM++H +KGLE PVV L TG K + Sbjct: 822 KLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHR 881 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 L P + + + + + ++ T E R+LYV +TRA ++LII N Sbjct: 882 DLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINN 941 Query: 671 SNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTN---------S 703 ++ + +T+ D + + + + Sbjct: 942 MDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDAVSFREELKMTSELSNIV 1001 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------ 751 +K +W W+ +E +E ++ + S K +I Sbjct: 1002 DDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESNYKEEIYKRLSFKYKYDN 1061 Query: 752 --NEPYILNPSTID------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 + P L+ S + K RG IIH +Q Sbjct: 1062 ASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEKKKISPSERGTIIHLFMQ 1121 Query: 792 VIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYS 847 + E K I + + + + I + + + S + Sbjct: 1122 HLDLKKAENEEDIKEQINRLIEREFITYEQSKVISPYK-ILKFCRGELGKRILNSNNVNK 1180 Query: 848 EVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 E+ S +I + +II G ID + + + +YKT + +IE Sbjct: 1181 EMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLDYKTDYV--NDIEE 1238 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 I + Q+ YE+ L K++ +Y+ Sbjct: 1239 IKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269 >gi|302332580|gb|ADL22773.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus JKD6159] Length = 1217 Score = 366 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 157/1024 (15%), Positives = 315/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E ++ D + + + + Sbjct: 456 TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAFRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSESIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ + +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQFPEGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGKQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|291544540|emb|CBL17649.1| recombination helicase AddA, Firmicutes type [Ruminococcus sp. 18P13] Length = 1187 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 146/1012 (14%), Positives = 314/1012 (31%), Gaps = 120/1012 (11%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 ++ + L + ++ + T ++ LQ+A + + +LL Sbjct: 213 GQTIAACIQRLDEAIRLSAEVNQEKLTAFL----ITEQEQLTLLQKACTEKDPDRCAALL 268 Query: 70 SSFFL-------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 ++ P+K + + + + + L+ + R + Sbjct: 269 NALSFASFPRVTKTCTDPEKRELAKALRDDGKKIMKDLQTEAVSLLCHRQEDLDAHC-RL 327 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY-----KIDQEI 177 + L+ E K + F D LL I+ ++ + Sbjct: 328 IPVLHAFLQQLDDRLWEMKCDKNAIGFTDAEQLALSLLGTCQADGTIQQTALAKELSEFY 387 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 I+IDE QDT+ Q + + ++ + ++ LF VGD KQ+IY F A P+ Sbjct: 388 QIIMIDEFQDTNNKQDLIFKLISHK----GSAVANGDNLFMVGDVKQAIYRFRLANPRNF 443 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTI 295 +R + + + + I L +FRS+ +++ +V+ +FS ++ S + Sbjct: 444 IRTMQAFKPYTGKDDGENACILLNRNFRSSPEVIAMVNFLFSTLMTPQVGEVAYTSEEAL 503 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 ++ ++ + D+ A IA I+ Sbjct: 504 HQGAAFAETPRNTEIALLEDGEQDTNP----------------------EAAYIAKRIAR 541 Query: 356 MIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 M+ S+G R +D +L+R + + ++ + Sbjct: 542 MLREGAPVSDGANHTRPCTPRDFCILMRNKAKGSVYVQALAE----QGVAAYSEEAAAYL 597 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------- 462 I L+ L R I + D + +L SP+F F D++ ++ + Sbjct: 598 KAREITLLLNLLRIIDNPPQDTAMAAVLLSPMFRFDMDELTQLRLLAPKVSLYAAICRGI 657 Query: 463 -TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520 + K + + A +P I + Sbjct: 658 GETGAADAQPLLTGAMYEKTKGFYNALQAFRMYAMQDTPERLIRRIYESTDFLSVMQRYS 717 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-----TIKRAHSANHNEVRIM 575 G + L L + E S L + + Q A S + + V I Sbjct: 718 DGAKKQANLRLMLTYARNYETASGGGLSGFLHYIAQVSARGKDFQPGTAVSGSEDVVAIK 777 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P VFL ++ + + + ++ + + + Sbjct: 778 TIHKSKGLEFPFVFLAESETDFNHQDDRAAFQFLQEYGFGFRLQDPTVYTRYKTLPYAAI 837 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK-------------------S 676 + + E RLLYV +TRA D+L + N + +K+ + Sbjct: 838 SMQRESYAKSEELRLLYVALTRAKDKLFLPLRLNDARKKQAFRLGAAIAASGRVTPSIAA 897 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINK-DEWIAYEWSTHHPENTPLEREETIKQLMD 735 + D ++ + E ++ + A HPE++ E+ Sbjct: 898 SANCMADWLWMALLTAENAAPLREACQMPPCPLQPAVPMEILHPEDSSDATEQDTPTPAA 957 Query: 736 EQKIPKKLFSPIKNDINE---------PYILNPSTIDTKG--------KTNLESLLSDNQ 778 K + + ++ P + S + + + + Sbjct: 958 YPKPDPAMVTALRMQFAAVYDDRLMGIPSKTSVSALSKDEDAVNLALRRPRFMAEETALT 1017 Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 +G +H LQ + + T++ L + L I +P+ Sbjct: 1018 GAEKGTALHAFLQYADFAVAAQDPDAERQRLTEDGHLTRRQADSLDLNRIRAFFASPLYE 1077 Query: 839 TA-MSCDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 + + E +I+ + ++SG +D + + + +YKT + Sbjct: 1078 RIRQAEHVWRERKFLVRISDLQLLDQPQYTGTNAMLSGIMDLVFEEPDGLVLVDYKTDYV 1137 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFIIPQNK 939 E + + QL +Y + L + K + +L + +P+ Sbjct: 1138 QGG--EMLTERYQRQLLLYRRTLALLH-QKPVKETVLYSFHLNRAIPLPEEA 1186 >gi|15923957|ref|NP_371491.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|15926556|ref|NP_374089.1| hypothetical protein SA0828 [Staphylococcus aureus subsp. aureus N315] gi|148267401|ref|YP_001246344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus JH9] gi|150393454|ref|YP_001316129.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1] gi|156979293|ref|YP_001441552.1| hypothetical protein SAHV_0962 [Staphylococcus aureus subsp. aureus Mu3] gi|253316128|ref|ZP_04839341.1| hypothetical protein SauraC_08287 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005757|ref|ZP_05144358.2| hypothetical protein SauraM_04790 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795298|ref|ZP_05644277.1| recombination helicase AddA [Staphylococcus aureus A9781] gi|258406947|ref|ZP_05680100.1| recombination helicase AddA [Staphylococcus aureus A9763] gi|258421915|ref|ZP_05684836.1| recombination helicase AddA [Staphylococcus aureus A9719] gi|258435312|ref|ZP_05689051.1| recombination helicase AddA [Staphylococcus aureus A9299] gi|258441524|ref|ZP_05690884.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115] gi|258447223|ref|ZP_05695372.1| recombination helicase AddA [Staphylococcus aureus A6300] gi|258449983|ref|ZP_05698081.1| recombination helicase AddA [Staphylococcus aureus A6224] gi|269202582|ref|YP_003281851.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98] gi|282893994|ref|ZP_06302225.1| recombination helicase AddA [Staphylococcus aureus A8117] gi|282927190|ref|ZP_06334812.1| recombination helicase AddA [Staphylococcus aureus A10102] gi|295405773|ref|ZP_06815582.1| recombination helicase AddA [Staphylococcus aureus A8819] gi|296276179|ref|ZP_06858686.1| exonuclease RexA [Staphylococcus aureus subsp. aureus MR1] gi|297245364|ref|ZP_06929235.1| recombination helicase AddA [Staphylococcus aureus A8796] gi|81705953|sp|Q7A6H4|ADDA_STAAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|81781869|sp|Q99VC3|ADDA_STAAM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764537|sp|A6U074|ADDA_STAA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764554|sp|A5IRE5|ADDA_STAA9 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764555|sp|A7X0I2|ADDA_STAA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|13700771|dbj|BAB42067.1| SA0828 [Staphylococcus aureus subsp. aureus N315] gi|14246736|dbj|BAB57129.1| similar to ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|147740470|gb|ABQ48768.1| DNA helicase/exodeoxyribonuclease V, subunit A [Staphylococcus aureus subsp. aureus JH9] gi|149945906|gb|ABR51842.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1] gi|156721428|dbj|BAF77845.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257789270|gb|EEV27610.1| recombination helicase AddA [Staphylococcus aureus A9781] gi|257841486|gb|EEV65927.1| recombination helicase AddA [Staphylococcus aureus A9763] gi|257842248|gb|EEV66676.1| recombination helicase AddA [Staphylococcus aureus A9719] gi|257848973|gb|EEV72956.1| recombination helicase AddA [Staphylococcus aureus A9299] gi|257852314|gb|EEV76240.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115] gi|257853971|gb|EEV76925.1| recombination helicase AddA [Staphylococcus aureus A6300] gi|257856903|gb|EEV79806.1| recombination helicase AddA [Staphylococcus aureus A6224] gi|262074872|gb|ACY10845.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98] gi|282590879|gb|EFB95954.1| recombination helicase AddA [Staphylococcus aureus A10102] gi|282763480|gb|EFC03609.1| recombination helicase AddA [Staphylococcus aureus A8117] gi|285816646|gb|ADC37133.1| ATP-dependent nuclease, subunit A [Staphylococcus aureus 04-02981] gi|294969208|gb|EFG45228.1| recombination helicase AddA [Staphylococcus aureus A8819] gi|297177667|gb|EFH36917.1| recombination helicase AddA [Staphylococcus aureus A8796] gi|312829364|emb|CBX34206.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130452|gb|EFT86439.1| hypothetical protein CGSSa03_03488 [Staphylococcus aureus subsp. aureus CGS03] gi|329728233|gb|EGG64672.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus aureus subsp. aureus 21172] Length = 1217 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 160/1009 (15%), Positives = 311/1009 (30%), Gaps = 149/1009 (14%) Query: 28 VSDINKYVSLSMETGN-----PTILKKAQTL--QQASQTQCIEERFSLLSSFFLTQKFTP 80 + D + + +E G T + L A + E L L ++ Sbjct: 252 IEDERRLMGRVLEGGFIDIPYLTDHEFGARLPNVTAKIKEANEMMVDALEDAKL--QYKK 309 Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 K++I + N + LK + + K + + + Sbjct: 310 YKSLIDKVKNDYFSREADDLKADMQQL------------APRVKYLARIVKDVMSEFNRK 357 Query: 141 KKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+ +LDF D +L D + I Q IL+DE QDT+ +Q +++ + Sbjct: 358 KRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI 417 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 K LF VGD KQSIY F A+P + + + G I+ Sbjct: 418 -------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRID 467 Query: 260 LPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 L +FRS ++L+ + +F E + D + + + V L V + Sbjct: 468 LSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEAD 527 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKD 375 + + + A I + +++ ++ G R KD Sbjct: 528 QEH----------------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKD 571 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I++L R + + I N R + ++ +++ R I + D+ Sbjct: 572 IVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDI 627 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIH 489 V +++S ++ F ED++ +I + Y+ I + N K + + I Sbjct: 628 YLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQ 687 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548 ++ + Q F G L N + E +S+ L Sbjct: 688 SYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLY 747 Query: 549 ELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I +++ K N N VR+MT+H++KGLE P V Sbjct: 748 QFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLK 807 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + + + + + +K E RL+YV +TRA +QL Sbjct: 808 QPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLY 867 Query: 664 ICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKL 700 + + Y ++ + +K K Sbjct: 868 LIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKD 927 Query: 701 TNSINKDEWIAYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLF 744 + S + E+ E + + + + K Sbjct: 928 IAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGNEDVKAQIKHQLDYQ 987 Query: 745 SPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFN 781 P ND +P + S + T + S + Sbjct: 988 YPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANE 1047 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMT 838 G ++H ++Q + E + + Y + + A K++ I + + + + Sbjct: 1048 IGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYS 1107 Query: 839 TAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---H 887 + Y E+ ++ +D+ II G ID I + + +YKT Sbjct: 1108 IIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNR 1167 Query: 888 HVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 E + + Q+ Y+ L+ NK + L + + Sbjct: 1168 RRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215 >gi|323443832|gb|EGB01444.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O46] Length = 1217 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 157/1024 (15%), Positives = 317/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E ++ D + + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESEHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + IH ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIHSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K + S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQVEDSSRPNVNISMIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKNQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPRGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|251796231|ref|YP_003010962.1| recombination helicase AddA [Paenibacillus sp. JDR-2] gi|247543857|gb|ACT00876.1| recombination helicase AddA [Paenibacillus sp. JDR-2] Length = 1277 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 157/1080 (14%), Positives = 328/1080 (30%), Gaps = 168/1080 (15%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQAS 57 GL + + D+ S +N+ + L+ E P L L + Sbjct: 216 GLRSSPWVASLRADVELALSGAASLLNQAMQLTREPAGPAPYAATFEEDLAIVGGLAETV 275 Query: 58 QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT- 116 + E F + + + + + + +++ +L+++ KK + Sbjct: 276 RMHPWEMWFESFQAVQFGKLKAMRGDDYDKTMQEQAKELRDQAKKLISSLADELFGRSAE 335 Query: 117 ------YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI- 169 ++ A L YE AK+ +LDF DL +L+ + + + Sbjct: 336 EFAWELQELAPLMAALSELVIEFGQRYEAAKRSKGLLDFGDLEHYCLRILRAPESTPELT 395 Query: 170 -----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + ++ + IL+DE QDT+++Q ++ + + F VGD KQ Sbjct: 396 TPSPAATEYQRQFDEILLDEYQDTNMVQEAIVSLIA---------NPHAGNRFMVGDVKQ 446 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY F AEP + + + G I+L +FRS +++ V+ VF Sbjct: 447 SIYRFRLAEPNLFMSKYKNY----GAPGGDGLRIDLARNFRSRLEVVDGVNDVFRAIMRE 502 Query: 285 QGLSEDSTTTIRHRSSR----IGQVGT--VQLWEQVVSQHDSQCNPQ----------QES 328 D G V+L + ++ + ++ Sbjct: 503 TVAEMDYDKRAELVCGASYPEPDLPGRFAVELAVIDKAGSSNEEDGAVSPADSDDESEQG 562 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR---VIQAKDILVLVRKRKD 385 +S + +A + AR IA I +++ +GKKR ++ +DI++L+R Sbjct: 563 AGPAAESAEELQTAQLEARLIARQIRSLLDEGFRVYDGKKRESRPMEWRDIVILLRA--- 619 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 T + I D ++ +++L R I + D+ L+SP+ Sbjct: 620 TQAWAPVIIEELQGAGIPAYAELSSGYFDATEVETILSLLRVIDNPYQDIPLAGTLRSPI 679 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSP 500 F + +++ I + +Q + K ++ + + A+ S Sbjct: 680 FGLNAEELALIRIGAMQDTYYDAVLQAAGDLLLPDELRRKLSLFLERLDRWRNDARQGSL 739 Query: 501 HDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-- 557 D I G + L + + E S+ L + +E+ Sbjct: 740 ADLIWSIYRETGYYDFAGGLPGGVQRQANLRALHDRARQYEATSFRGLFRFLRFVERMRD 799 Query: 558 ---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 RA N VRIM++H +KGLE PVVF+ G L Sbjct: 800 SGGDLGTARALGEQENVVRIMSIHKSKGLEFPVVFVAGLGKNFNQQDLRSAFLKHKQLGF 859 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 P + + + ++ E R+LYV +TR +++ + + + K Sbjct: 860 GPKYIDPEKRVSYPTLPFLSIRRRMRMEMLAEEMRILYVALTRPKEKMFLVGTVSDAAAK 919 Query: 675 KSNQRTWYD--------------------------------------------------M 684 + ++ D + Sbjct: 920 QRRWQSASDAKGYISDFRLSSASTFLDWLGPLAAAAFNQLPDETVPGHEDSRLLQWRAGV 979 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 V + E ++ ++ + + +E++E ++ ++ + + Sbjct: 980 VDAAMLGLEAAIGVEERTEEDQAREDRMQGVLSLAQLDQVEQDEELRNRLEWRYGYRAST 1039 Query: 745 S-PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR---------GLIIHKLLQVIF 794 K + E L+ ++ + + G +L Sbjct: 1040 LVAAKTSVTEMKRLHSEAVEMPEDSAALYPADTFSDRQQEDGKKSSGGGSYTFRL--RRP 1097 Query: 795 TLPEHKRKNFIT-----SYCTKNAKLWPAKEYKNL-------------LLSITRLLENPM 836 E ++ L + L ++ P Sbjct: 1098 RFMEEAALTAAEKGTVSHLLMQHLPLAGDVDVDRLGSILSDMVSRKLLTARQADSIDLPA 1157 Query: 837 MTTAM----------SCDSYSEVSVSGKINC-----------PKKDIIISGRIDQISISQ 875 + + EV S + ++I G ID + + Sbjct: 1158 VAAFFDTEIGKRLVHAKWVRREVPFSCMFPAQRVYPGLAADMAGEPVLIQGVIDCLFEDE 1217 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I + +YKT ++ E H QL +Y + ++ + + + + Sbjct: 1218 NGIVLLDYKTDRIYMKQWEQAAERHRFQLELYAEAIESVIGQPIAESHVFFFDGGRAVKL 1277 >gi|283470166|emb|CAQ49377.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus ST398] Length = 1217 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + +S + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 K G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TKDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|170759836|ref|YP_001785776.1| recombination helicase AddA [Clostridium botulinum A3 str. Loch Maree] gi|251764515|sp|B1KUZ8|ADDA_CLOBM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169406825|gb|ACA55236.1| ATP-dependent nuclease subunit A [Clostridium botulinum A3 str. Loch Maree] Length = 1279 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 156/992 (15%), Positives = 323/992 (32%), Gaps = 150/992 (15%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 + + +++ + ++K + + + ++ S A L + Sbjct: 288 KDADKEAKERVKKLRDRVKKKILEIKNILNSYENEFIKKEFIFLYPSMKALSNLVILFDK 347 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 YE K++ ++DF D+ +L + + + ++ +LIDE QD++L Sbjct: 348 KYEAKKRERDLIDFNDIEHLCLSILTDKDSEDHIIPSDTALDYRKKFTEVLIDEYQDSNL 407 Query: 191 IQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVGDEKQSIYSFHGA 232 +Q ++ ++ + F VGD KQSIY F A Sbjct: 408 VQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPHIGLDIPNRFMVGDVKQSIYRFRQA 467 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P+ L + K ++L +FRS +++ V+ +F + D T Sbjct: 468 KPEIFLDKYNEYS---EEESIKNRKVKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYT 524 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + ++ ++ D + + R +A Sbjct: 525 EEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNMDEEEALDNIQLEGRLVAKK 584 Query: 353 ISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 I ++G + G+ R +Q +DI++L+R + + I V Sbjct: 585 IQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPV---FVEELAKEGIPVF 641 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-------- 457 + + IK +++L + I + D+ + +L+SP+ +F++D++ I Sbjct: 642 ADTNSGYFNTTEIKTIISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVNKNIAF 701 Query: 458 ----------TQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQ 496 + E ++ Y + + + + I+ ++ + Sbjct: 702 YECMEIIYKLYKDEELDSYYSFYMEDEDKTNKIVKDIKEELKNKICSFIEKLNLWRKKSI 761 Query: 497 FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554 +F + + G + L + E+ SY L I+ + Sbjct: 762 HIDIDEFIWFLYVETGYYGYVGALPAGEQRQANLRILFQRAKQYEKTSYKGLFNFINFIN 821 Query: 555 ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + N N VRIM++H +KGLE PVV L TG K + Sbjct: 822 KLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMMDLNKNILFHR 881 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 L P + + + + + ++ T E R+LYV +TRA ++LII N Sbjct: 882 DLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINN 941 Query: 671 SNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTNSI-------- 704 ++ + +T+ D + + + ++ I Sbjct: 942 MDKTVEDWLNLSDDKNKVPEYAVMSGKTYLDWIGPALIKHKDAVSLREELKITSGLSNIV 1001 Query: 705 -NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------ 751 +K +W W+ +E E ++ + S K +I Sbjct: 1002 DDKSKWKIELWNKKELLKEKVEENEVEISEKIKETLMNLGESNYKEEIYKKLSFKYKYDN 1061 Query: 752 --NEPYILNPSTID------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 + P L+ S + K RG IIH +Q Sbjct: 1062 ASSIPTKLSVSDVKKQFILDEKENTEELFKKVELRKPMFMGEEKKISPSERGTIIHLFMQ 1121 Query: 792 VIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYS 847 + E K I + + + N I + + + + S + Sbjct: 1122 HLDLKKAENEEDIKEQINRLIEREFITYEQSKIINPYK-ILKFCRSELGKRMINSNNINR 1180 Query: 848 EVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 E+ S ++ + +II G ID ++ + + +YKT + +IE Sbjct: 1181 EMPFSIEVPAVEIYRELDKDIYKDEKLIIQGIIDCYFEEEEGLVLLDYKTDYV--NDIEE 1238 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 I + Q+ YE+ L K++ +Y+ Sbjct: 1239 IKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269 >gi|314933179|ref|ZP_07840544.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87] gi|313653329|gb|EFS17086.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87] Length = 1218 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 147/943 (15%), Positives = 298/943 (31%), Gaps = 128/943 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 ++ K L +K + + K+ + K + + + K+ + Sbjct: 303 KKHYDKYKGLVSDVKNDYFSRSADDLKLDMQKLAPRVAYLAQIVKDVIEEFSKQKRSRNL 362 Query: 147 LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 LDF D +L D + I + IL+DE QDT+ +Q +++ + Sbjct: 363 LDFADYEHFALQILTNEDGTPSHIAKTYREHFEEILVDEYQDTNRVQEKILSCI------ 416 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 K LF VGD KQSIY F A+P + + G +I+L +FR Sbjct: 417 -KTGEEYNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFTSEGEGTG---MVIDLSQNFR 472 Query: 266 STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 S ++L+ + +F +N + D + + + VQL + + + Sbjct: 473 SRQEVLSTTNYLFKHMMDDNVGEIIYDDAAQLYYGAPYDQADKPVQLRALIEADRE---- 528 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVR 381 + + + A I + ++I + ++ G R KDI++L R Sbjct: 529 ------------TSELTGSEQEANYIVEQVKDIIENEQVYDMKTGTYRSATFKDIVILER 576 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + + I + + ++ +++ + + + D+ V ++ Sbjct: 577 NTDNARN----LQQAFKNSDIPFHVKSKKGYFEQTEVQLVLSFLKTVDNPLQDIYLVGLM 632 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIA 495 +S ++ F+ED++ +I Y+ IQ + + +K Q IK I Sbjct: 633 RSVIYQFTEDELAEIRVASPNDIYFYQSIQNYIDDNNAKEDLVHKLQRFIKDIKNYQDYR 692 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 Q + Q F G + L +N + E +S+ L + I + Sbjct: 693 QNEPVYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLINKAIEFENSSFRGLFQFIRFI 752 Query: 555 EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ + N N VR+MT+H++KGLE P V + + + + Sbjct: 753 DELIDRGRDFGEENIVGPSDNVVRMMTIHSSKGLEFPFVIYSGLSKKYNEKDLTQPVILN 812 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + + + +K E RL+YV +TRA +QLI+ Sbjct: 813 QQYGLGMDYYDTDKEMIYPSLSSAAYRAINRKEHISEEMRLIYVALTRAKEQLILIGRVK 872 Query: 670 TSNE---------------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 E K++ + Y ++ ++ + + Sbjct: 873 KEQELTELEQLPISKDLIAVNERLTAKNSFKFIYSILAKHQSASLPDEQKFERDIETLNS 932 Query: 709 WIAYEWSTHHPENTPLEREETIKQLM------------------DEQKIPKKLFSPIKND 750 + + + EE + + P + D Sbjct: 933 EVKPRVTITIDHYEDVSTEEVTPENERRTVNDIDDFNSGNDDVKAKIHHQLAYEYPYQED 992 Query: 751 INEPYILNPSTID-----------------------TKGKTNLESLLSDNQTFNRGLIIH 787 +P + S + T + S + G ++H Sbjct: 993 TLKPSKQSVSELKRQLETEESDTNYDRVRQYRIGVATYERPRFLSEDKKRKANEIGTLMH 1052 Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL---LLSITRLLENPMMTTAMSCD 844 ++Q + + + SY +E I R +E+ + D Sbjct: 1053 TVMQHLPFKETGLTREELDSYIDMLIHRNIIEEDAKADIKYDDIMRFIESSLYLQIAQAD 1112 Query: 845 -SYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQEI 893 Y+E ++ +D+ II G ID I + +YKT Sbjct: 1113 KVYTEFPFVVNQAKVDQLPEDNQDVSIIQGMIDLIFQKDGKYYFVDYKTDAFNRRKGMTD 1172 Query: 894 EH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 E + + Q+ Y L+ + L + + Sbjct: 1173 EEIGQQLKEKYQIQMKYYRNTLETILKQ-PVQGYLYFFKFGML 1214 >gi|226325452|ref|ZP_03800970.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758] gi|225206195|gb|EEG88549.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758] Length = 1214 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 159/977 (16%), Positives = 306/977 (31%), Gaps = 120/977 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFS---LLSSFFLTQKF--TPQKNIITQEINKKSPDLKE 98 K + L A + + E + + P K + L + Sbjct: 248 EADQKVLRKLFAAKSYEEMYEALKEKPAWKTLSRKKDDAVDPTKREQVRAYRDTWKKLID 307 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 ++ + + ++L K K + ++DF D+ Sbjct: 308 DIRNNYFFQPPSEMEADRKICIPVMHELVSLVKEYQRVLAAKKAEKNLIDFRDMEQFALQ 367 Query: 159 LLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 +L +++ V + + + ++IDE QD++LIQ ++ Sbjct: 368 ILTRKENGKRVPSEVAKEYQNTFEEVMIDEYQDSNLIQEAIL-------TSVSRISRGEN 420 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 LF VGD KQSIY F + P+ + + I+L +FRS A++L V Sbjct: 421 NLFMVGDVKQSIYRFRLSRPELFMEKFNTYSLTYGGN----RRIDLHKNFRSRAEVLDAV 476 Query: 275 DKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332 + +F E ++ D + +S + ++ + + Sbjct: 477 NFIFRQIMTEELGRITYDENAALYVGASYPESEKNETEILLLDTKSEEEDTGLSV----- 531 Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLIT 390 +++ + R IA I ++ I G R I+ +DI++L R T Sbjct: 532 --RSGSQTAKELEVRLIAQRIGELMENQQIVDKETGMLRPIRYQDIVILTRS---PAGWT 586 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + D I V+ + L I +M R + + D+ V +LKSP + Sbjct: 587 DTVTRILQDEGIPVLAESADGYFETLEIGWMMDYLRVLDNFRQDIPLVAVLKSPFGRMTN 646 Query: 451 DDIFKICTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 +++ +I E E + K + V ++ + + HD Sbjct: 647 EELAQIRELNAEVPFYQNVLETADPEKKTDLPAGILKKVRDVFGWLFYFRERIPYTAIHD 706 Query: 503 FFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----- 556 I+ R + G LD + E SY L + ++Q Sbjct: 707 LLWEIMKKTGYRDYIAAMPGGKGRRANLDMLITRAKAFEATSYKGLYHFVRYIDQLKKYN 766 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + + VR+M++H +KGLE PVV + G + + I P L Sbjct: 767 VDFGEAGLYDEQTDAVRLMSIHKSKGLEFPVVIVTGMGKRFNIQDTTASVVIHPDLGFGI 826 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--- 673 ++KS + + + E R+LYV +TRA ++LI+ + + Sbjct: 827 DAIDLERRTKSPTLLKKVIQNEIGLENLGEELRVLYVALTRAKEKLILTGTVPHAADKLE 886 Query: 674 -----------------KKSNQRTWYDMVYDSFHNDERVKKIKL---------TNSINKD 707 K + ++YD + + I+L ++K+ Sbjct: 887 ACQLEQENSQKETLDFTKLARATSYYDWILPAAVRKTEEVPIELKVIGVDTLVEGEVDKE 946 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------------------- 748 E + E ++ KI + Sbjct: 947 AADYLEKEVFLEKIEAEEHPMSVTDERFRAKIEEAFSYRYPYQGEDQLKMKYTVSELKKY 1006 Query: 749 ---NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---LPEHKRK 802 ++ + IL P N + + +G HK+++++ + Sbjct: 1007 AAASEEEDGEILIPEEEIVPILPNFMKEEEEVKGATKGTAYHKVMELLDFSKIYTMDLLR 1066 Query: 803 NFITSYCTKNAKLWPAKEYKNLL-LSITRLLENPMMTTAM----SCDSYSEVSVSGKINC 857 I + KN A + I L + + Y E ++ Sbjct: 1067 ENIENL--KNEGYLDAGTAGCIQKKEIMEFLNTNVGKRMQNAARAKTLYREQPFVLGVDA 1124 Query: 858 --------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909 + ++I G ID I + +YKT Q + + QL +Y K Sbjct: 1125 KEFYPDQKKGEMVLIQGIIDAYFEEDGEIIVLDYKTDRV--QTEAELKDRYREQLRLYTK 1182 Query: 910 ILKDSYPNKSLVCLLIY 926 L+ K + +IY Sbjct: 1183 ALEQIIR-KKVKEQIIY 1198 >gi|323440877|gb|EGA98585.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O11] Length = 1217 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 152/939 (16%), Positives = 297/939 (31%), Gaps = 128/939 (13%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 KK L +K+K + + ++ + K + + + K+ +LDF Sbjct: 308 KKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFS 367 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I Q IL+DE QDT+ +Q +++ + K Sbjct: 368 DYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI-------KTG 420 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + + G I+L +FRS + Sbjct: 421 DEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRIDLSQNFRSRKE 477 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E ++ D + + + + V L V + + Sbjct: 478 VLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYDESDHPVNLKVLVEADQEH------- 530 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + +++ ++ G R KDI++L R Sbjct: 531 ---------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQ 581 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N R + ++ +++ R I + D+ V +++S + Sbjct: 582 ARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVI 637 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F ED++ +I + Y+ I + N K + + I ++ Sbjct: 638 YQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHP 697 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G L N + E +S+ L + I +++ Sbjct: 698 VYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELI 757 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 758 ERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFG 817 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + +K E RL+YV +TRA +QL + Sbjct: 818 LGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKS 877 Query: 674 ---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKLTNSINKDEWI 710 + Y ++ + +K K I Sbjct: 878 LLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRP 937 Query: 711 AYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLFSPIKNDINEP 754 S + E+ E + + + + K P ND +P Sbjct: 938 NVNISIVYFEDVSTETILVNDEYRSVNQLETMQYGNEDVKAQIKHQLDYQYPYVNDTKKP 997 Query: 755 YILNPSTI-----------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 + S + T + S + G ++H ++Q Sbjct: 998 SKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQ 1057 Query: 792 VIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMTTAM-SCDSYS 847 + E + + Y + + A K++ I + + + + + Y Sbjct: 1058 HLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYR 1117 Query: 848 EVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEH-- 895 E+ ++ +D+ II G ID I + + +YKT E Sbjct: 1118 ELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIG 1177 Query: 896 --IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + + Q+ Y+ L+ NK + L + + Sbjct: 1178 TQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215 >gi|49485743|ref|YP_042964.1| hypothetical protein SAS0837 [Staphylococcus aureus subsp. aureus MSSA476] gi|297208398|ref|ZP_06924828.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|81649660|sp|Q6GAV9|ADDA_STAAS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49244186|emb|CAG42612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887137|gb|EFH26040.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 1217 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 156/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K + S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|222150842|ref|YP_002559995.1| hypothetical protein MCCL_0592 [Macrococcus caseolyticus JCSC5402] gi|222119964|dbj|BAH17299.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 1148 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 158/983 (16%), Positives = 336/983 (34%), Gaps = 108/983 (10%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCIEERFSLLSSF 72 I + + + V I + L + T L+ Q +++ + + +EE+FS + S Sbjct: 207 SINQQINDELHQAVQLIKRAEDLCISPALDTNLEYLQKIREQLEQFPESLEEKFSFIQSI 266 Query: 73 FLTQKFTPQKN--IITQEINKKSPDLKEKLKKS---------QDEFIKIRDRFNTYKMFK 121 +K +K+ +E+N+ + + KK ++ D + Sbjct: 267 QFGRKPNMKKSDDPYDKELNEGIKEYLTQSKKLVSNIQENYLYAPIEELADDIRAMSV-- 324 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + + + + + K++ ++DF D +L D I + + + IL Sbjct: 325 EVERLTRMTQMVIDRFSQLKRERKLIDFSDYEHFALQILIHNDEPTEIAHMLKAQYKEIL 384 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT+ +Q +I+++ D +F VGD KQSIY F AEP+ + + Sbjct: 385 VDEYQDTNRVQESIIQAIKRDD-----------NMFMVGDVKQSIYKFRQAEPELFMEKY 433 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRS 299 + G +I+L +FRS ++ +++FS + + + D + + + Sbjct: 434 SHFKS-----GGPGKVIDLSQNFRSRRAVINNTNEIFSKIMDEKLGDIIYDDDQMLYYGA 488 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 +L + + IA I +I Sbjct: 489 PYDDMSQHTELHLL--------------------NKEELNDIEYFASHHIADVIEQIIAQ 528 Query: 360 DTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + ++ G+ R Q KDI +L R + + D KI N + Sbjct: 529 EEVYDVKTGEYRAAQYKDIAILERGFSSAAEHMKVMK----DRKIPFHVNSKEGYFQTDE 584 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYEYIQKFA 474 I +++L R + + D+ +L+S ++ F ++ + + + + Sbjct: 585 INTILSLLRVVDNPLQDIPLAGLLRSIIYQFDAHELTALRSDCSVFLYHNLLSYSVNGED 644 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFL 533 K + V+ I + ++ S D I ++F + G++ L+ L Sbjct: 645 AQLKYKVKKVLADISDYREQSRKVSVKDLIDYIYNDTLLIEKFTLLPGGHQRQANLEGLL 704 Query: 534 NFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 + EQ+SY + + + ++ S N VR+MTVH +KGLE P V Sbjct: 705 QKAEQFEQSSYRGIYQFLRFVDNILEAGKDFGEMNIVSDEANVVRMMTVHASKGLEFPFV 764 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + Q + +++ + L + + I ++ E Sbjct: 765 IYNNIDRQFNLMETKEQLLLNQRLGLSITFYDKMAHTTYPLAINQLFKTKIRNEQVSEEL 824 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RL+YV +TRA ++L++ + + Q D D ++ + ++ I + Sbjct: 825 RLMYVALTRAREKLVLVGNVKDDKVIEKFQNVDVDKKMDDYYRLSALSPLQFIAPIALHD 884 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIP----KKLFSPIKNDINEPYILNPSTIDT 764 + ET + E K P ++ P + S I Sbjct: 885 DSIDVRMIRTLNTLENKATETAESTKAEGVTWLQELKDYRYPYLSENLLPTKESVSEIKK 944 Query: 765 KGK----------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 + G ++HK++Q + L + Sbjct: 945 AQETDDEATAWTYINQYRLGKATYDRPKFMSEEKKTAAEYGTLMHKVMQHLPRLNNVDSE 1004 Query: 803 NFITSYCTKNAKLWPAKEYKNLLLS--ITRLLENPMMTTA-MSCDSYSEVSVSGK---IN 856 + + + E + L+ I + + + + + Y E+ I Sbjct: 1005 DIKHFLDDLVNRRIISDEERPLINEKHIYQFTKTVLYDRLVHADEVYFELPFVIGKQYIT 1064 Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTH-------HHVPQEIEHIPYTHIAQLSIYEK 909 D ++ G ID + + + + +YKT + + + + Q++ Y+K Sbjct: 1065 QSHPDQLVQGMIDCVFKYEGHYYFIDYKTDQVISRLGRTTEETLAELKLRYEVQMNYYKK 1124 Query: 910 ILKDSYPNKSLVCLLIYVSEPKV 932 L+ ++ + L + V Sbjct: 1125 TLEVIL-DEPVTGYLYFFEAGTV 1146 >gi|227523105|ref|ZP_03953154.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii ATCC 8290] gi|227089709|gb|EEI25021.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii ATCC 8290] Length = 1254 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 148/1006 (14%), Positives = 307/1006 (30%), Gaps = 146/1006 (14%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 L+Q F ++ LT+ + + + + + +K++ +K + Sbjct: 273 DGLRQLITGFD----FESMTKAKLTKDADEHQKQVHKLVKGTNDQMKKQWQKLVTGYFAW 328 Query: 111 RDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-RDVS 166 ++ N +T+ + A Y++AK + ++ F D+ D+L + + Sbjct: 329 NEQDNVDLMNAAKARIEKLVTVVRTFRAAYKQAKARRHLMQFIDIEHAAYDILNDVSEQA 388 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 +R ++ + I+ DE QD + +Q ++ + S F VGD KQSI Sbjct: 389 KQVRQRLQDQYYEIMTDEYQDNNRLQDAILNKIA---------RSDRGNRFMVGDVKQSI 439 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-- 284 Y F A+P ++++ +I L +FRS +I + VF + Sbjct: 440 YRFRLADPTMFIKKQAQY----IEQDNDNELISLSENFRSAKNIDDFTNLVFEQTMDHQV 495 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 ++ + ++ ++ + + S E + +S Sbjct: 496 GDIAYTGKSKLQFGATYYPDDMKADVSLIIYRTKSSAAATSNEDLGAGDQIEDSDSGQ-- 553 Query: 345 LARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 A IA I ++ + + K R + DI ++ + + Y Sbjct: 554 -AEIIAQKIRTLVDDKQLIYDKKLEEMRPVTFGDIAIISPTHNN----ELTLSDIFTQYG 608 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 I I+ +M+L I + D++ V +L+SP+ E+ + + R+ Sbjct: 609 IPAEITGAKSYFKTTEIQIMMSLLSIIDNPFQDIALVAVLRSPIVGLDENQLAFLRINRN 668 Query: 462 ETETVYE-----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 +A K +K + +AQ I Sbjct: 669 TGNYYQAVLDFYRGFDRLEPNDYATRIYQKVDRFMKQLRRFKDVAQQDGLVSLIWDIYDQ 728 Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 G + L + E+N + L + + +++ Sbjct: 729 TGYLDYVGGMPAGLQRQTNLHALYDRAADYEKNGFKGLFQFVKFIQRMQERDNDLANANP 788 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + + N V +MT+H +KGL+ P+VFL D G Q I K + + Sbjct: 789 TTSENTVHVMTIHGSKGLQFPIVFLNDVGKQFNMQDTIGKYVLNDHWGIGIDYLNNQTRE 848 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----------- 674 ++ K + E R LYV MTRA +L + Sbjct: 849 FRSPLQKQAILDMTKNAGLSEEMRKLYVAMTRAEQRLYLVAKVKGEKSGDNQQLIQGWQG 908 Query: 675 -------------KSNQRTWYDMVYDSFHNDERV----------------KKIKLTNSIN 705 ++ +++ + + V + + + Sbjct: 909 LTDANELVLPAAVRNAAKSYLGWIGPAISRHPNVLDRFGDSIHSNVLAGDPTLFNLDFYD 968 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--------LFSPIKNDINEPYIL 757 + + +P + + + Q P K P Sbjct: 969 DERITKESGRQKANQTSPNDFIDQLAQKKLTVAQPTKAAISQVMTFKYPHTAATKTTAYQ 1028 Query: 758 NPSTIDTKGKTN--------------------------------LESLLSDNQTFNRGLI 785 + S I + G Sbjct: 1029 SVSEIKRLFDDPDNTQLSGYSTLDVNKLAKTGRYLKTDFEVPQFISEGGGKPAPTEIGTA 1088 Query: 786 IHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS- 842 H +LQ I T+P +R + + K + P + + + R ++ + ++ Sbjct: 1089 THLVLQQIDLTTVPTIERIEALIANLVKQQVISPEVASQINVDEVLRFYQSEVGKYVLAN 1148 Query: 843 -CDSYSEVSVSG---------KINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQ 891 +++ E S + I+I G ID + + +++F+YKT H P+ Sbjct: 1149 PENTHREAPFSLLMKARDVFKDFQDNDEQTILIHGIIDGYVATNEAVYLFDYKTDHITPK 1208 Query: 892 -EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935 I I + QL +Y L + + L +S + + Sbjct: 1209 TTISDIVDRYRGQLELYGLALSKIL-GRPITHKYLYLLSANQAVQV 1253 >gi|323466409|gb|ADX70096.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus helveticus H10] Length = 1204 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 172/995 (17%), Positives = 321/995 (32%), Gaps = 123/995 (12%) Query: 33 KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92 K ++ E+ +Q + +++ LL S T F K +++ + Sbjct: 240 KELAKVKESFTLFAQNLNNFVQAVKEDDDYDKQRELLRSCVFTINFRKSKKW-DEDLLEF 298 Query: 93 SPDLKEKLKKSQDEFIKI---------RDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKK 142 +++ +++ + +++ + + + +++ A+ L + + K+ Sbjct: 299 YNEIQSLKDEAKSQVFDTFTSFYAVTEKEQIKIMQESQKIVTAISTAEIKLIERFNQLKR 358 Query: 143 KNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +LD+ D+ +L S R + ILIDE QD + +Q +I+ + Sbjct: 359 NANLLDYSDMEQLAYQILSPDTSSSQMARDFYQNKFKEILIDEYQDINALQERIIQQIKS 418 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + TLF VGD KQSIY F AEP L++ + I L Sbjct: 419 E---------KKNTLFMVGDVKQSIYGFRQAEPSLFLQKYHQFAEDENEHE---ERILLS 466 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 +FRST + V+ VF + D G + + + Q Sbjct: 467 DNFRSTEPVTQTVNAVFKSILSTDFGGIDYQKE-----------GQLIFGAKYYPKSLPQ 515 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILV 378 + + + + + I + + GK R ++ DI + Sbjct: 516 ASEVIVHEKKNNNEKSENEIDFSEIQMVLARIKQLEDEHVQIFDSNTGKMRDMEYSDIAI 575 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R R D I + D + +M + I + + D+ V Sbjct: 576 LTRSRSD----NLEIMQEFAKQDIPLFVTDAENYFQTFELTVMMNYLKIIDNPDQDIPLV 631 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQ 496 +L+SPLFNF E ++ KI + + K ++ + + EL A Sbjct: 632 TVLRSPLFNFDEKELAKIRIKSKNSNFYSALTSYVGTNDVLSKKCKNFLNQLAELRSFAT 691 Query: 497 FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 + I + + G + L+ E + L + I+ ++ Sbjct: 692 THRISELIWSIYERTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFID 751 Query: 556 QY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + N VR+MT+H +KGLE P+VF V I Sbjct: 752 RMRRSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHHYQMRDLNGNYII-- 809 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 +D GI + + + + + K+ EE R+LYV +TRA +LI+ + Sbjct: 810 -NSDSMGITLREQNYRVDSLVKAMGNITKKQQLLEEEARILYVALTRAKQKLILVGDVPS 868 Query: 671 SNEKKSNQRT---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----------- 716 N+K T + + S+ D + + + Sbjct: 869 FNKKVKEWSTELNHAGQLPLINKLSATSPLSFIGPSLRFDRHVVIKLNDITKSIDQSQKI 928 Query: 717 -------------HHPENTPLEREETIKQLMDEQKIPK--KLFSPIKNDINEPYILNPST 761 E+T + E T K + Q + K + P ++ S Sbjct: 929 LFIDYQDEDTKFIKKDEDTDNQNENTSKSALLTQTVNKLYQFNYPFRDASETTAYQAVSE 988 Query: 762 IDTKGKTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF-T 795 I +++ L ++ G H +LQ T Sbjct: 989 IKKAFNDPIDAELENSHLLTSTNRYLQPIDIKPNFLYQTKFTGAEIGTATHLILQYYDYT 1048 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVS- 852 + + + KL P I + + EV S Sbjct: 1049 NDSADNLDQEIATLIEQKKLNPDIVSSLNKDQIDWFVHGDFAKDFWKEPTNLKREVDFSS 1108 Query: 853 --------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTH 900 + P I++ G ID +++ I +F+YKT H + IE I + Sbjct: 1109 LLSARTLFKDFSDPDAKILVHGTIDGYFVAKNGIILFDYKTDHVNKTNIDKSIELIKEKY 1168 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL +YE+ L + K + LI + +V + Sbjct: 1169 TGQLRLYEQALNEFSEKKVIGKYLILLDAKQVVEV 1203 >gi|320141216|gb|EFW33063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MRSA131] Length = 1217 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 158/1024 (15%), Positives = 315/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGDFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + +S Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGASYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|87161998|ref|YP_493570.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509167|ref|YP_001574826.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|262049318|ref|ZP_06022192.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30] gi|284023894|ref|ZP_06378292.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 132] gi|294847955|ref|ZP_06788702.1| recombination helicase AddA [Staphylococcus aureus A9754] gi|123486587|sp|Q2FIA8|ADDA_STAA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764539|sp|A8Z073|ADDA_STAAT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|87127972|gb|ABD22486.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367976|gb|ABX28947.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162550|gb|EEW47118.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30] gi|294824755|gb|EFG41177.1| recombination helicase AddA [Staphylococcus aureus A9754] gi|315197320|gb|EFU27658.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus CGS01] gi|320143273|gb|EFW35063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MRSA177] Length = 1217 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 157/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|57651659|ref|YP_185840.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL] gi|88194662|ref|YP_499458.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221050|ref|YP_001331872.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman] gi|221142113|ref|ZP_03566606.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452081|ref|ZP_05700097.1| exonuclease RexA [Staphylococcus aureus A5948] gi|262052141|ref|ZP_06024349.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3] gi|282922247|ref|ZP_06329942.1| recombination helicase AddA [Staphylococcus aureus A9765] gi|304381479|ref|ZP_07364129.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694859|sp|Q5HHB7|ADDA_STAAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|122539894|sp|Q2FZT5|ADDA_STAA8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764538|sp|A6QFH8|ADDA_STAAE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|57285845|gb|AAW37939.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL] gi|87202220|gb|ABD30030.1| ATP-dependent nuclease subunit A, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373850|dbj|BAF67110.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman] gi|257860296|gb|EEV83128.1| exonuclease RexA [Staphylococcus aureus A5948] gi|259159960|gb|EEW44996.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3] gi|269940469|emb|CBI48846.1| putative helicase [Staphylococcus aureus subsp. aureus TW20] gi|282593537|gb|EFB98531.1| recombination helicase AddA [Staphylococcus aureus A9765] gi|302750795|gb|ADL64972.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339842|gb|EFM05786.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329313635|gb|AEB88048.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus T0131] gi|329726247|gb|EGG62717.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus 21189] Length = 1217 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 157/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|283770033|ref|ZP_06342925.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus H19] gi|283460180|gb|EFC07270.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus H19] Length = 1217 Score = 365 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 158/1024 (15%), Positives = 317/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E ++ D + + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + IH ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIHSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|187777525|ref|ZP_02993998.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC 15579] gi|187774453|gb|EDU38255.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC 15579] Length = 1279 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 169/969 (17%), Positives = 330/969 (34%), Gaps = 150/969 (15%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 +LK D + R ++ S A L + YE K++ ++DF D+ Sbjct: 311 ELKNILDSYENEFIRKEFIFLYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLS 370 Query: 159 LLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-- 211 +L + + I ++ +LIDE QD++L+Q ++ ++ ++S Sbjct: 371 ILTDKTDEGHIIPSNIALDYRKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFSNSQL 430 Query: 212 ----------------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 F VGD KQSIY F A+P+ L + G K+ Sbjct: 431 VFNEEEINFEEPQVGLDIPNRFMVGDVKQSIYRFRQAKPEIFLDKYNQYS---EEEGSKY 487 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIG--QVGTVQLW 311 I+L +FRS +++ V+ +F + L + +S + +++L Sbjct: 488 RKIKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYTEKEALTVGASYGEEVKGESIELC 547 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKK 368 S+ ++ + + ++A++I I N + + G+ Sbjct: 548 LMDKKYELSEEVLKEYNIDEEEALDNIQLEGRLVAKKIQEVIGNNLEGGLKVFDKKLGEY 607 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R IQ +DI++L+R + + I V + D IK +++L + I Sbjct: 608 RRIQYRDIVILMRATSNWAPV---FVEELAKEGIPVFADTNSGYFDTTEIKTIISLLQII 664 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC------------------TQRHETETVYEYI 470 + D+ + +L+SP+ +F++DD+ I + + ++ Y + Sbjct: 665 DNPLQDIPLLSVLRSPIASFTDDDLIDIRMVNKNIAFYECMEIIYRLYKNEKLDSYYSFY 724 Query: 471 QKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + + + I+ ++ + +F + + Sbjct: 725 VEDEDKINKIVKDMKEELKNKICSFIEKLNLWRKKSIHIDIDEFIWFLYVETGYYGYVGA 784 Query: 520 -RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVR 573 G + L + E+ SY L I+ + + N N VR Sbjct: 785 LAAGEQRQANLRILFQRAKQYEKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVR 844 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 IM++H +KGLE PVV L TG K + L P + + + + Sbjct: 845 IMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHRDLGYGPDYVDIERRIAYPSLVKN 904 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ--------------- 678 + ++ T E R+LYV +TRA ++LII N ++ N Sbjct: 905 IIKNKIRLETLSEEMRILYVALTRAREKLIITGLINNVDKTVENWLNLSEEKNKVPEYAV 964 Query: 679 ---RTWYDMVYDSFHNDERVKKIKLTNSINKDE---------WIAYEWSTHHPENTPLER 726 +T+ D + + + + + + W W+ +E Sbjct: 965 MSGKTYLDWIGPAVIKHKDAVSFREELKMASELCNIVDDNSKWKIELWNKKELLKEKVEE 1024 Query: 727 EETIKQLMDEQKIPKKLFSPIKNDI--------------NEPYILNPSTIDTKGKTNLES 772 E ++ + K S K +I N P L+ S + + + E Sbjct: 1025 NEIEISEKIKETLMKLEESNYKEEIYKRLSFKYKYDNASNIPTKLSVSDVKKQFILDDEE 1084 Query: 773 LLSDN------------------QTFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTK 811 + RG IIH +Q + E K I K Sbjct: 1085 NTEELFKKVELRKPMFMEEKKKISPSARGTIIHLFMQHLDLKKVEKEEDIKEQINRLIEK 1144 Query: 812 NAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINC------------P 858 + + N I + + + + S + E+ S +I Sbjct: 1145 EFITYEQSKVINPYK-ILKFCRSELGKRMVNSNNINREMPFSIEIPAVEIYKELDKEIYK 1203 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 + ++I G ID ++ + + +YKT + +IE I + Q+ YE+ LK K Sbjct: 1204 DEKLMIQGIIDCYFEEEEGLVLLDYKTDYV--NDIEEIKNRYKIQIKYYEEALKRI-TGK 1260 Query: 919 SLVCLLIYV 927 ++ +Y+ Sbjct: 1261 TVKDKYLYL 1269 >gi|223042879|ref|ZP_03612927.1| recombination helicase AddA [Staphylococcus capitis SK14] gi|222443733|gb|EEE49830.1| recombination helicase AddA [Staphylococcus capitis SK14] Length = 1218 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 150/943 (15%), Positives = 303/943 (32%), Gaps = 128/943 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 ++ K L +K + + K+ + K + + + K+ + Sbjct: 303 KKHYDKYKSLVSDVKNDYFSRSADDLKLDMQKLAPRVAYLAQIVKDVIEEFSKQKRSRNL 362 Query: 147 LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 LDF D +L D + I + IL+DE QDT+ +Q +++ + Sbjct: 363 LDFADYEHFALQILTNDDGTPSHIAKTYQEHFEEILVDEYQDTNRVQEKILSCI------ 416 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 K LF VGD KQSIY F A+P + + G +I+L +FR Sbjct: 417 -KTGEEYNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFTSEGEGTG---MVIDLSQNFR 472 Query: 266 STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 S ++L+ + +F +N + D + + + VQL + + + Sbjct: 473 SRQEVLSTTNYLFKHMMDDNVGEIIYDDAAQLYYGAPYDQTDKPVQLRALIEADKE---- 528 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVR 381 + + + A I + ++I + +F G R KDI++L R Sbjct: 529 ------------TSELTGSEQEANYIVEQVKDIIANEQVFDMKTGTYRSSTFKDIVILER 576 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + + I + + ++ +++ + + + D+ V ++ Sbjct: 577 NTDNARN----LQQAFKNSDIPFHVKSKKGYFEQTEVQLVLSFLKTVDNPLQDIYLVGLM 632 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIA 495 +S ++ F+ED++ +I Y+ IQ + SK Q IK I + Sbjct: 633 RSVIYQFTEDELAEIRVVSPNDIYFYQSIQNYIEDDNSKTHLVHKLQRFIKDIKNYQDYS 692 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 Q + Q F G + L +N + E +S+ L + I + Sbjct: 693 QNQPVYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLINKAIEFENSSFRGLFQFIRFI 752 Query: 555 EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ + N N VR+MT+H++KGLE P V + + + + Sbjct: 753 DELIDRGRDFGEENIVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKYNEKDLTQPVILN 812 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + + + +K E RL+YV +TRA +QLI+ Sbjct: 813 QQYGLGMDYYDTDKEMVYPSLSSAAYRAINRKGHISEEMRLIYVALTRAKEQLILIGRVK 872 Query: 670 TSNE---------------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 E K++ + Y ++ + + + Sbjct: 873 KEQELTELEQLPISADLIAVNERLTAKNSFKFIYSILSKHQSASLPDDQKFERDIETLNS 932 Query: 709 WIAYEWSTHHPENTPLEREETIKQ------------------LMDEQKIPKKLFSPIKND 750 + + + EE + + + P ++D Sbjct: 933 EVKPRVTITIDHYEDVSTEEVTPENERRTVNDIDDINSGNDDIKAKIHHQLAYRYPYQDD 992 Query: 751 INEPYILNPSTID-----------------------TKGKTNLESLLSDNQTFNRGLIIH 787 +P + S + T + S + G ++H Sbjct: 993 TLKPSKQSVSELKRQLETEESNTNYDRVRQYRIGVATYERPRFLSENKKRKANEIGTLMH 1052 Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL---LLSITRLLENPMMTTAMSCD 844 ++Q + + + SY K +L +E I R +E+ + D Sbjct: 1053 TVMQHLPFNETGLTREELDSYVDKLIQLNIIEEDAKADIKYDDIMRFIESSLYLQIAQAD 1112 Query: 845 -SYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQEI 893 Y+E+ ++ +D+ II G ID I + +YKT Sbjct: 1113 KVYTELPFVVNQAMVDQLPEDNQDVSIIQGMIDLIFQKDGKYYFVDYKTDAFNRRKEMTD 1172 Query: 894 EH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + + + Q+ Y L+ + L + + Sbjct: 1173 DEIGQQLKQKYQIQMEYYRNTLETILKQ-PVQGYLYFFKFGML 1214 >gi|258455496|ref|ZP_05703455.1| recombination helicase AddA [Staphylococcus aureus A5937] gi|257862314|gb|EEV85083.1| recombination helicase AddA [Staphylococcus aureus A5937] Length = 1217 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 160/1009 (15%), Positives = 311/1009 (30%), Gaps = 149/1009 (14%) Query: 28 VSDINKYVSLSMETGN-----PTILKKAQTL--QQASQTQCIEERFSLLSSFFLTQKFTP 80 + D + + +E G T + L A + E L L ++ Sbjct: 252 IEDERRLMGRVLEGGFIDIPYLTDHEFGARLPNVTAKIKEANEMMVDALEDAKL--QYKK 309 Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 K++I + N + LK + + K + + + Sbjct: 310 YKSLIDKVKNDYFSREADDLKADMQQL------------APRVKYLARIVKDVMSEFNRK 357 Query: 141 KKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+ +LDF D +L D + I Q IL+DE QDT+ +Q +++ + Sbjct: 358 KRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI 417 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 K LF VGD KQSIY F A+P + + + G I+ Sbjct: 418 -------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRID 467 Query: 260 LPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 L +FRS ++L+ + +F E + D + + + V L V + Sbjct: 468 LSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEAD 527 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKD 375 + + + A I + +++ ++ G R KD Sbjct: 528 QEH----------------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKD 571 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I++L R + + I N R + ++ +++ R I + D+ Sbjct: 572 IVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDI 627 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIH 489 V +++S ++ F ED++ +I + Y+ I + N K + + I Sbjct: 628 YLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQ 687 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548 ++ + Q F G L N + E +S+ L Sbjct: 688 SYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLY 747 Query: 549 ELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I +++ K N N VR+MT+H++KGLE P V Sbjct: 748 QFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLK 807 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + + + + + +K E RL+YV +TRA +QL Sbjct: 808 QPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLY 867 Query: 664 ICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKL 700 + + Y ++ + +K K Sbjct: 868 LIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKD 927 Query: 701 TNSINKDEWIAYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLF 744 + S + E+ E + + + + K Sbjct: 928 IAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGNEDVKAQIKHQLDYQ 987 Query: 745 SPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFN 781 P ND +P + S + T + S + Sbjct: 988 YPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANE 1047 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMT 838 G ++H ++Q + E + + Y + + A K++ I + + + + Sbjct: 1048 IGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYS 1107 Query: 839 TAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---H 887 + Y E+ ++ +D+ II G ID I + + +YKT Sbjct: 1108 IIAEAEQIYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNR 1167 Query: 888 HVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 E + + Q+ Y+ L+ NK + L + + Sbjct: 1168 RRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215 >gi|226947672|ref|YP_002802763.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str. Kyoto] gi|254802143|sp|C1FSA8|ADDA_CLOBJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|226844297|gb|ACO86963.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str. Kyoto] Length = 1279 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 157/992 (15%), Positives = 321/992 (32%), Gaps = 150/992 (15%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 + + +++ + +L+ + + + + ++ S A L + Sbjct: 288 KDADKEAKERVKKLRDRVKKRIIELRITLNSYENEFTKKEFIFLYPSMKALSNLVILFDK 347 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSL 190 YE K++ ++DF D+ +L + + I ++ +LIDE QD++L Sbjct: 348 KYEAKKRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALNYRKKFAEVLIDEYQDSNL 407 Query: 191 IQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVGDEKQSIYSFHGA 232 +Q ++ ++ + F VGD KQSIY F A Sbjct: 408 VQEVIMSMVSRVKGYWSFYNGQLIFNEEEINLEEPQIGLDIPNRFMVGDVKQSIYRFRQA 467 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P+ L + G K ++L +FRS +++ V+ +F + D T Sbjct: 468 KPEIFLDKYNEYS---EEEGTKNRKVKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYT 524 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + ++ ++ D + + R +A Sbjct: 525 EEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQLEGRLVAKK 584 Query: 353 ISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 I ++G + G+ R +Q +DI++L+R + + I V Sbjct: 585 IQKLVGNNLEGGLKVFDRKLGEYRNLQYRDIVILMRATSNWAPV---FVEELAKEGIPVF 641 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-------- 457 + D IK +++L + I + D+ + +L+SP+ +F++D++ I Sbjct: 642 ADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVNKNITF 701 Query: 458 ----------TQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQ 496 + + ++ Y + + N + I+ + + Sbjct: 702 YECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSI 761 Query: 497 FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554 +F + + + G + L + + SY L I+ + Sbjct: 762 HIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFIN 821 Query: 555 ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + N N VRIM++H +KGLE PVV L TG K + Sbjct: 822 KLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMMDLNKNILFHR 881 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 L P + + + + + ++ T E R+LYV +TRA ++LII N Sbjct: 882 DLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINN 941 Query: 671 SNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTN---------S 703 ++ + +T+ D + + + + Sbjct: 942 MDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDAVSFREELKMTSELSNIV 1001 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------ 751 +K +W W+ +E +E ++ + S K +I Sbjct: 1002 DDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESDYKEEIYKRLSFKYKYDN 1061 Query: 752 --NEPYILNPSTID------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 + P L+ S + K RG IIH +Q Sbjct: 1062 ASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEKKKISPSERGTIIHLFMQ 1121 Query: 792 VIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYS 847 + E K I + + + + I + + + S + Sbjct: 1122 HLDLKKAENEEDIKEQINRLIEREFITYEQSKVISSYK-ILKFCRGELGKRILNSNNVNK 1180 Query: 848 EVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 E+ S +I + +II G ID + + + +YKT + +IE Sbjct: 1181 EMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLDYKTDYV--NDIEE 1238 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 I + Q+ YE+ L K++ +Y+ Sbjct: 1239 IKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269 >gi|168334042|ref|ZP_02692261.1| Recombination helicase AddA [Epulopiscium sp. 'N.t. morphotype B'] Length = 1186 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 153/994 (15%), Positives = 311/994 (31%), Gaps = 105/994 (10%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 + DL + + + + ++ + P + + ++ F+ + S Sbjct: 210 EASLAADLRLELESIQTLLERALVIAKKPNGPLHYADSIGFNLQNLSKMDLSSFANIVSA 269 Query: 73 FLT---QKFTPQKNIITQEINKKSPDL-------KEKLKKSQDEFIKIRDRFNTYKMFKS 122 + ++ + + L + L+ + T + Sbjct: 270 LANCNIAALSRKRPACDLSLKDAAKSLSSTATSRLKYLQDNYAILADPTVISKTASISTI 329 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEIN 178 L Y E K+ VLDF DL LL + ++ + + Sbjct: 330 FKELARLVTTFETRYSEKKQDLGVLDFNDLEHYAIKLLVTESDGALAPTTVAKELGKYYS 389 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 I IDE QD + +Q ++ ++ ++ T F VGD KQSIY F + PK L Sbjct: 390 EIYIDEYQDVNDVQETILSAIA----------TNGATRFMVGDIKQSIYKFRLSNPKIFL 439 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + Q+ + A I+L +FRS A IL +++F R Sbjct: 440 DKYNRFQQFSPTAAADIR-IDLSHNFRSRAIILDAANEIFERLMRPAVGDLIYDQAQRLY 498 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + + + + + S D+ + A + A IA + +++ Sbjct: 499 AGR-------EYATFDETAKQCELHLLELSTLDADDAEEPSNKAELEAAMIAKIVKDILD 551 Query: 359 TD------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + R ++ +DI +LVR + + + Sbjct: 552 GNSNPKIVYDKDLDIYRAVEPRDIAILVRAKAVSTAFENAL----YKVGVDAYAEISKSF 607 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 + ++ ++ + I + D+ F+ +L S L D++ +I T + Y Sbjct: 608 FEATEVELMINFLKIIDNINQDIPFLSVLHSSLLGLDFDELSEIRTYA--DGSFYNACVA 665 Query: 473 FAN-CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 + SK I +++ + + G L Sbjct: 666 YKQLHPHSKLADFFAEIEGFRKLSKMVPVSELIDQVFLQTGYLGYVSMLDHGAIRSANLR 725 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585 + EQN+ L + LEQ ++ +N V+IM++H +KGLE Sbjct: 726 ILKQTAIDFEQNTKVGLFNFLIFLEQLRNDEASIQQAKSAVDQNNTVKIMSIHKSKGLEF 785 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P+V L + + + + + + L + + Sbjct: 786 PIVILANAHKRFNQMETYQPILLHNQLGLGAQFRDMEKYVDYTTLPYLAIKNKIFNENIS 845 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNE------------------KKSNQRTWYDMVYD 687 E R+LYV +TRA ++LI+ +N+ + + N + ++ Sbjct: 846 EEIRILYVALTRAKEKLIVTAVTNSFDSLLSNALLHATEHIDSIFIRNQNSYLNWIILAL 905 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK------ 741 + + + + N+ +WI ++S + + E Q I Sbjct: 906 AHNPYTLTESVANFNAGTMGQWIIKQYSRLSFADADADFVEPPSSNEVIQDIFDLIATDT 965 Query: 742 -------------KLFSPIKNDINEPYILNPSTIDTK-----------GKTNLESLLSDN 777 D P ++ S + TK S Sbjct: 966 SSNSLKDEIFAKLDYEYRHILDTTLPQKISVSELKTKMSDSISSAPYSSNIPKFIASSSY 1025 Query: 778 QTFNRGLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 + G IIH + Q + L + I S +N N+ + + Sbjct: 1026 DGLSHGNIIHAVFQHLDYLKYTDHTSIRQNIESMIAQNKLAKNTLAIANI-DRLVSFANS 1084 Query: 835 PMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 ++ + S+ E ++ + +ISG +D I I +YKT Sbjct: 1085 AIINRMRKAAFSFKEQPFLYQLPQSEGRSLISGIVDAYFEENGKIIIIDYKTDSTKAHTK 1144 Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 I + Q+ Y + L++ +K + +Y+ Sbjct: 1145 IEIVDRYRLQIQWYSEALQNI-THKVVTERYLYL 1177 >gi|21282578|ref|NP_645666.1| hypothetical protein MW0849 [Staphylococcus aureus subsp. aureus MW2] gi|300912474|ref|ZP_07129917.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|81762665|sp|Q8NXE9|ADDA_STAAW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|21204016|dbj|BAB94714.1| MW0849 [Staphylococcus aureus subsp. aureus MW2] gi|300886720|gb|EFK81922.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH70] Length = 1217 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 156/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEI 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K + S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|293368345|ref|ZP_06614973.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|291317592|gb|EFE58010.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] Length = 1224 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 153/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 313 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAHRVAYLAQIVQDVIQSFGVQKRSRNILDFS 372 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 373 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 425 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + T +G I+L +FRS + Sbjct: 426 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTESGL---RIDLSQNFRSRQE 482 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL + + ++ Sbjct: 483 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALIEASSEN------- 535 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 536 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 586 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 587 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 642 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ KI + Y+ I+ + K I+ I + + +Q Sbjct: 643 YQFTEEELAKIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 702 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 703 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 762 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 763 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 822 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672 + +K E RL+YV +TRA +QLI+ Sbjct: 823 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 882 Query: 673 ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698 + +S K Sbjct: 883 LIKYEKLAVSDTHIAVNERLTATNPFVLIYGILAKHQSPSLPNDQRFERDIDQLNSEVKP 942 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756 +++ I+ E ++ E + E +E + I ++ KI ++L +N Sbjct: 943 RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 1002 Query: 757 LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791 S + K + E + G ++H ++Q Sbjct: 1003 SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1062 Query: 792 VIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847 + + K+ + Y + +L +++ + I ++ P+ + + Y+ Sbjct: 1063 HLPFREQRLTKDELLQYIDGLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1122 Query: 848 EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894 E+ + +D+ II G ID I S + +YKT + E Sbjct: 1123 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1182 Query: 895 -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + + Q++ Y L+ + + L + + I Sbjct: 1183 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1224 >gi|298694207|gb|ADI97429.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ED133] Length = 1217 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 157/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E ++ D + + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSKLYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|227510906|ref|ZP_03940955.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri ATCC 11577] gi|227085858|gb|EEI21170.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri ATCC 11577] Length = 1254 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 148/1006 (14%), Positives = 309/1006 (30%), Gaps = 146/1006 (14%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 L+Q F ++ LT+ + + + + + +K++ +K + Sbjct: 273 DGLRQLITGFD----FESMTKAKLTKDADEHQKQVHKLVKGTNDQMKKQWQKLVTGYFAW 328 Query: 111 RDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-RDVS 166 ++ N +T+ + A Y++AK + ++ F D+ D+L + + Sbjct: 329 NEQDNVDLMNAAKARIEKLVTVVRTFRAAYKQAKARRHLMQFIDIEHAAYDILNDVSEQA 388 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 +R ++ + I+ DE QD + +Q ++ + S F VGD KQSI Sbjct: 389 KQVRQRLQDQYYEIMTDEYQDNNRLQDAILNKIA---------RSDRGNRFMVGDVKQSI 439 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ- 285 Y F A+P ++++ ++ + I L +FRS +I + VF + + Sbjct: 440 YRFRLADPTMFIKKQAQYIEQDNDNEL----ISLSENFRSAKNIDDFTNLVFEQTMDHRV 495 Query: 286 -GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 ++ + ++ ++ + + S E + +S Sbjct: 496 GDIAYTGKSKLQFGATYYPDDMKADVSLIIYRTKSSAAATSNEDLGAGDQIEDSDSGQ-- 553 Query: 345 LARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 A IA I ++ + + K R + DI ++ + + Y Sbjct: 554 -AEIIAQKIRTLVDDKQLIYDKKLEEMRPVTFDDIAIISPTHNN----ELTLSDIFTQYG 608 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 I I+ +M+L I + D++ V +L SP+ E+ + + R+ Sbjct: 609 IPAEITGAKSYFKTTEIQIMMSLLSIIDNPFQDIALVAVLHSPIVGLDENQLAFLRINRN 668 Query: 462 ETETVYE-----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 +A K +K + +AQ I Sbjct: 669 TGNYYQAVLDFYRGFDRLEPNDYATRIYQKVDRFMKQLRRFKDVAQQDGLVSLIWDIYDQ 728 Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 G + L + E+N + L + + +++ Sbjct: 729 TGYLDYVGGMPAGLQRQTNLHALYDRAADYEKNGFKGLFQFVKFIQRMQERDNDLANANP 788 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + + N V +MT+H +KGL+ P+VFL D G Q I K + + Sbjct: 789 TTSENTVHVMTIHGSKGLQFPIVFLNDVGKQFNMQDTIGKYVLNDHWGIGIDYLNNQTRE 848 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----------- 674 ++ K + E R LYV MTRA +L + Sbjct: 849 FRSPLQKQAILDMTKNAGLSEEMRKLYVAMTRAEQRLYLVAKVKGEKSGDNQQLIQGWQG 908 Query: 675 -------------KSNQRTWYDMVYDSFHNDERV----------------KKIKLTNSIN 705 ++ +++ + + V + + + Sbjct: 909 LTDANELVLPAAVRNAAKSYLGWIGPAISRHPNVLDRFGDSIHSNVLAGDPTLFNLDFYD 968 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--------LFSPIKNDINEPYIL 757 + + +P + + + Q P K P Sbjct: 969 DERITKESGRQKANQTSPNDFIDQLAQKKLTVAQPTKAAISQVMTFKYPHTAATKTTAYQ 1028 Query: 758 NPSTIDTKGKTN--------------------------------LESLLSDNQTFNRGLI 785 + S I + G Sbjct: 1029 SVSEIKRLFDDPDNTQLSGYSTLDVNKLAKTGRYLKTDFEVPQFISEGGGKPAPTEIGTA 1088 Query: 786 IHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS- 842 H +LQ I T+P +R + + K + P + + + R ++ + ++ Sbjct: 1089 THLVLQQIDLTTVPTIERIEALIANLLKQQVISPEVASQINVDEVLRFYQSEVGKYVLAN 1148 Query: 843 -CDSYSEVSVSG---------KINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQ 891 +++ E S + I+I G ID + + +++F+YKT H P+ Sbjct: 1149 PENTHREAPFSLLMKARDVFKDFQDNDEQTILIHGIIDGYVATNEAVYLFDYKTDHITPK 1208 Query: 892 -EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935 I I + QL +Y L + + L +S + + Sbjct: 1209 TTISDIVDRYRGQLELYGLALSKIL-GRPITHKYLYLLSANQAVQV 1253 >gi|226314559|ref|YP_002774455.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599] gi|226097509|dbj|BAH45951.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599] Length = 1275 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 144/1061 (13%), Positives = 332/1061 (31%), Gaps = 143/1061 (13%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G++ ++ P + + + + +A+ Sbjct: 233 GMTAKMRRAVLLAGSPEGPAGYLPLLEAEAAALHRA-----GAACRAGWEATVEAVRGVV 287 Query: 66 FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F+ L T ++ ++ + + +++ ++++ R + Sbjct: 288 FAKLPPVKGTDPLVKEQVQDLRNSVKKELAEQIEQYFSTPAEQYVADLQR-----IAPHM 342 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEIN 178 L + Y+ K+ ++DF DL +L + + V + I ++ ++ Sbjct: 343 QTLARLVTAFSDAYQLEKRLRGLVDFGDLEHLALRVLTETNESGKTVPSSISTQLREQFA 402 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD +L+Q +++ ++ D + P F VGD KQSIY F AEPK L Sbjct: 403 EVLVDEYQDINLVQETILQMVSRD-----GANGQPANRFMVGDVKQSIYRFRLAEPKLFL 457 Query: 239 REKRINQKRATNAGQK-FSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295 + QK I+L +FRS +++ V+ +F + + D + + Sbjct: 458 EKYVTYQKDGDADEACIGRRIDLAANFRSRREVVDAVNFLFRQIMSHGVGEIGYDPSAEL 517 Query: 296 RHRSSRIGQV-----------GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 +R+S + ++ + E+ +S + S A + Sbjct: 518 INRASYPEAQPNRLQAEMHLIDRNTVIADEGQAVVAEATDEGEAGIPDGESAEEASVAQL 577 Query: 345 LARRIAYTISNMIGTDTIFS--------NGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 AR IA I + G R + +DI++L+R + Sbjct: 578 EARLIASRIRRWMEPGEGEEPLLVFDKKAGGMRPLAYRDIVILLRATSG---WGQTMQEE 634 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 + I V ++ +++L R I + D+ +L+SP+ E + +I Sbjct: 635 LHAAGIPVYAEQTAGYFAATEVETMLSLLRVIDNPLQDIPLAAVLRSPIVGLREQQLAQI 694 Query: 457 CTQRHETETV-----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 Y + + + + A+ + + T++ Sbjct: 695 RIHYATGPFHQAVLQYAEERPPQESWEKRLRQFFGRLGLWRTEARRGALSELLTMLYRET 754 Query: 512 KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS---- 566 + G + L + + E SY L + +++ Sbjct: 755 GYLDYVAALENGQQRQANLRALYDRARQYEAGSYRGLFRFLRFVDRLQEAGNDMGEARTI 814 Query: 567 -ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 N + VRIMT+H +KGLE PVVF+ G Q + + + L P Q Sbjct: 815 GENEDVVRIMTIHKSKGLEFPVVFVAGMGKQFNTMDLKSQFLLHKDLGFGPMAVEPSMQL 874 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-----------HSNTSNEK 674 + + + + L++ E R+LYV +TRA ++LI+ + + Sbjct: 875 RYPSLAALGIRQKLRRDMLAEEMRVLYVALTRAREKLILVGSSKDLAKSVTDWGRQDDSE 934 Query: 675 KSNQRT------WYDMVYDSFHNDERVKKIKLTNSINK----------DEWIAYEWSTHH 718 + + + D V + ++ + + + + Sbjct: 935 RLSDEDLIQAKGYLDWVGRAMLRHPGAGLLRAYPEQQGSGDVVRVRSVPDDSVWSFHFYQ 994 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS--- 775 + + E + +++ ++ + + + + + + ++ Sbjct: 995 ADELRAQGESANHEASLWERMTRREAIAERPSDDILREIVEKRLGWQDPHPIAPRVAAKW 1054 Query: 776 ------------------------------------DNQTFNRGLIIHKLLQVIFTLPEH 799 +G I H + Q + Sbjct: 1055 SVSELKRHAKVSKGGQPLTLPSITEKPKFLSEQKSNRLTAAEKGTITHLVFQHLDLKRPL 1114 Query: 800 KRKNFITS--YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKIN 856 + + L + + I R +P+ S + E+ + + Sbjct: 1115 DEADIREQVTALAAHRFLTDEQVQAVDVPQIARFFADPLGQRMKSAAVVHRELPFTLVLP 1174 Query: 857 C----------PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ----EIEHIPYTHI 901 + +++ G ID + + + ++KT + +E + + Sbjct: 1175 AYEVEAELGEESDEQVVVQGVIDCLLEEPDGSLVLIDFKTDWMAKEATAVAMEEMKRRYE 1234 Query: 902 AQLSIYEKILKDSY-PNKSLVCLLIYVSEPKVFIIPQNKLN 941 Q+ +Y + +K P ++ L +S ++ Sbjct: 1235 GQIRLYVRAIKQIIKPKGNVSSYLYLLSGGFSLSFSDESMD 1275 >gi|307704790|ref|ZP_07641686.1| recombination helicase AddA [Streptococcus mitis SK597] gi|307621699|gb|EFO00740.1| recombination helicase AddA [Streptococcus mitis SK597] Length = 1216 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 155/1031 (15%), Positives = 330/1031 (32%), Gaps = 141/1031 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQ 60 K F N+ E I + LW L F ++ + + +Q Sbjct: 228 KADFNSEKNKLTEQIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEIGSLNQES 287 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116 + ++L K + + L + + + + ++ D+ Sbjct: 288 DSQAYQAVLVRVVAISKEKNGRALTNASRKADLKPLVDAYNEERKAQFAKLGQLSDQITI 347 Query: 117 YKMFKS--------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + Y + K++ +F D+ T ++L+ Sbjct: 348 LDYQERYHGDTWKLAKTFQAFMSDFVEAYRQRKRQENAFEFADISYYTIEILENFP---Q 404 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 +R + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY Sbjct: 405 VREAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYR 453 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F A+P+ + + + ++ +I L +FRS++++L+ + VF + + Sbjct: 454 FRQADPQIFNEKFQRYVQ----NPKEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGE 509 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 + + + + ++ + +S + E+ + R Sbjct: 510 INYDNMHQLVFANTKL--------TSNPDNKAEFLLYDKDDSSEEEESQAETKLTGEMRL 561 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + K+I +L R ++Y I V + Sbjct: 562 VIKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDG 608 Query: 409 RFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 L ++ ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + Sbjct: 609 EQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVQE 668 Query: 468 EYIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 +K N K + + A+ S +D I + Sbjct: 669 NLYEKLVNAQKLATSQKNLIHTDLAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFY 728 Query: 514 RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSAN 568 + G L + E++++ L I ++Q A + Sbjct: 729 YDYVGALPNGPARQVNLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPP 788 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V +MT+H +KGLE P VF+++ + ++ + + Sbjct: 789 KDAVELMTIHKSKGLEFPYVFILNMDKDFNKQDSMSEVILSRKNGLGVKYIAKMETGAVE 848 Query: 629 NNI------------VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-- 674 ++ + L+ ++ E RLLYV MTRA +L + + + Sbjct: 849 DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAK 908 Query: 675 -----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 N + W + F D + + + Sbjct: 909 EYPAAKNGKLNSNTRLQARNFQDWMWAINKVFAKDNLNFSYRFVSEDQLTRETIGQLENK 968 Query: 718 HP----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----- 768 P + E IK+ ++ K + + + I P + PS I + Sbjct: 969 SPLQDSSQADNRQSEIIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDME 1028 Query: 769 -------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809 S G H+L+Q I +R + Sbjct: 1029 GVEIASQGQSVDKKISFDLPDFSTKEKVTGAEIGSATHELMQRID---LSQRPTLASLTE 1085 Query: 810 TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIII 864 T + L + + ++ Y E S + ++D ++ Sbjct: 1086 TLKQVQTSPAVRDKINLAKTLAFFDTALGQEILANTNHLYREQPFSMLKRDPKSQEDFVV 1145 Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 G +D + + I +F+YKT + E + + QL++Y + L +Y +++ L Sbjct: 1146 RGILDGYLLYEDKILLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYL 1203 Query: 925 IYVSEPKVFII 935 I + + +V ++ Sbjct: 1204 ILLGKDEVQVV 1214 >gi|253732675|ref|ZP_04866840.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|253729286|gb|EES98015.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus TCH130] Length = 1217 Score = 364 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 159/1009 (15%), Positives = 311/1009 (30%), Gaps = 149/1009 (14%) Query: 28 VSDINKYVSLSMETGN-----PTILKKAQTL--QQASQTQCIEERFSLLSSFFLTQKFTP 80 + D + + +E G T + L A + E L L ++ Sbjct: 252 IEDERRLMGRVLEGGFIDIPYLTDHEFGARLPNVTAKIKEANEMMVDALEDAKL--QYKK 309 Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 K++I + + + LK + + K + + + Sbjct: 310 YKSLIDKVKSDYFSREADDLKADMQQL------------APRVKYLARIVKDVMSEFNRK 357 Query: 141 KKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+ +LDF D +L D + I Q IL+DE QDT+ +Q +++ + Sbjct: 358 KRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI 417 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 K LF VGD KQSIY F A+P + + + G I+ Sbjct: 418 -------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRID 467 Query: 260 LPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 L +FRS ++L+ + +F E + D + + + V L V + Sbjct: 468 LSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEAD 527 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKD 375 + + + A I + +++ ++ G R KD Sbjct: 528 QEH----------------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKD 571 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I++L R + + I N R + ++ +++ R I + D+ Sbjct: 572 IVILERSFGQAHN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDI 627 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIH 489 V +++S ++ F ED++ +I + Y+ I + N K + + I Sbjct: 628 YLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQ 687 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548 ++ + Q F G L N + E +S+ L Sbjct: 688 SYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLY 747 Query: 549 ELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I +++ K N N VR+MT+H++KGLE P V Sbjct: 748 QFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLK 807 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + + + + + +K E RL+YV +TRA +QL Sbjct: 808 QPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLY 867 Query: 664 ICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKL 700 + + Y ++ + +K K Sbjct: 868 LIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKD 927 Query: 701 TNSINKDEWIAYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLF 744 + S + E+ E + + + + K Sbjct: 928 IAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGNEDVKAQIKHQLDYQ 987 Query: 745 SPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFN 781 P ND +P + S + T + S + Sbjct: 988 YPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANE 1047 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMT 838 G ++H ++Q + E + + Y + + A K++ I + + + + Sbjct: 1048 IGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYS 1107 Query: 839 TAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---H 887 + Y E+ ++ +D+ II G ID I + + +YKT Sbjct: 1108 IIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNR 1167 Query: 888 HVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 E + + Q+ Y+ L+ NK + L + + Sbjct: 1168 RRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215 >gi|57866488|ref|YP_188146.1| exonuclease RexA [Staphylococcus epidermidis RP62A] gi|81675092|sp|Q5HQJ4|ADDA_STAEQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|57637146|gb|AAW53934.1| exonuclease RexA [Staphylococcus epidermidis RP62A] Length = 1218 Score = 364 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 152/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 307 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + +G I+L +FRS + Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 476 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL V + ++ Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 529 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ +I + Y+ I+ + K I+ I + + +Q Sbjct: 637 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672 + +K E RL+YV +TRA +QLI+ Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 876 Query: 673 ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698 + +S K Sbjct: 877 LIKYEQLAVSDTHIAVNERLTATNPFVLIYGVLAKHQSPSLPNDQRFERDIDQLNSEVKP 936 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756 +++ I+ E ++ E + E +E + I ++ KI ++L +N Sbjct: 937 RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 996 Query: 757 LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791 S + K + E + G ++H ++Q Sbjct: 997 SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1056 Query: 792 VIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847 + + K+ + Y + + +L +++ + I ++ P+ + + Y+ Sbjct: 1057 HLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1116 Query: 848 EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894 E+ + +D+ II G ID I S + +YKT + E Sbjct: 1117 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1176 Query: 895 -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + + Q++ Y L+ + + L + + I Sbjct: 1177 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1218 >gi|329730541|gb|EGG66929.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU144] Length = 1218 Score = 364 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 152/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 307 DKYKSLVMKVKNDYFSRNTEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + +G I+L +FRS + Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 476 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL V + ++ Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 529 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ +I + Y+ I+ + K I+ I + + +Q Sbjct: 637 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672 + + +K E RL YV +TRA +QLI+ Sbjct: 817 LGMDYFDVNKDMAFPSLVSVAYRAINEKELISEEMRLTYVALTRAKEQLILVGRVKDEKS 876 Query: 673 ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698 + +S K Sbjct: 877 LIKYEQLAVSDTHIAVNERLTATNPFVLIYGVLAKHQSPSLPNDQRFERDIDQLNSEVKP 936 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756 +++ I+ E ++ E + E +E + I ++ KI ++L +N Sbjct: 937 RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 996 Query: 757 LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791 S + K + E + G ++H ++Q Sbjct: 997 SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1056 Query: 792 VIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847 + + K+ + Y + + +L +++ + I ++ P+ + + Y+ Sbjct: 1057 HLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1116 Query: 848 EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894 E+ + +D+ II G ID I S + +YKT + E Sbjct: 1117 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1176 Query: 895 -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + + Q++ Y L+ + + L + + I Sbjct: 1177 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1218 >gi|257875815|ref|ZP_05655468.1| UvrD/REP helicase [Enterococcus casseliflavus EC20] gi|257809981|gb|EEV38801.1| UvrD/REP helicase [Enterococcus casseliflavus EC20] Length = 1225 Score = 364 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 150/1018 (14%), Positives = 314/1018 (30%), Gaps = 131/1018 (12%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77 + ++ + + + T L +TL+ ++ + + + + Sbjct: 235 AAHLLQAAQDYARSDEAMEKAAQL-IDTELGMVETLKALLDADDVDGFYEQIQTLRFGRY 293 Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMFKSTLASLTLAK 131 +K +E++++ L++ KK ++ ++ + + Sbjct: 294 PAFRK-PEQKELSQEIKPLRDDAKKLVEQLKATFPYPPAEMMELLHRSAPVVEKMAAMTE 352 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 ++E K LDF DL T +L+ + +L+DE QD + + Sbjct: 353 AFMKAFQERKLSKGRLDFNDLEHFTLQILQGDGSGSEASTYYRDRFEEVLVDEYQDVNRL 412 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q ++ + + +P +F VGD KQSIYSF A+P + + + Sbjct: 413 QEAILYWVRQ-------VDHNPGNMFMVGDVKQSIYSFRLADPTLFIEKYLAFET----- 460 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L +FRS +D+L + VF + + + + Sbjct: 461 ENGGRRIVLAENFRSRSDVLDFTNLVFQQLMDERVGQIPYDEAAALITGFPDFPESEAFA 520 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---K 368 +++ + +Q + + A I +I ++ + + K Sbjct: 521 TELLLYEKEHESEEQLI----------DDKTEGEMQITALKIRELIESNFMIYDKKAKTN 570 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R I DI++L RK+ +I + + + I + ND I+ +++L + I Sbjct: 571 RPITYNDIVLLTPTRKNNLVILDVFK----QFGIPMAVNDAQNYFQATEIQTVVSLLQII 626 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----V 484 + D+ V +L+SP+ +ED + +I ++ + S Sbjct: 627 DNPYQDIPLVAVLRSPIVGLTEDQLAEIRLANRSSDYYDAVLDYHGQQEASPLWQTVDGF 686 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543 + + + A+ I + G + L ++ + E++S Sbjct: 687 LTKLEQWREEARRLPIPTLLWQIYEDTAYLDYVVGLPAGQQRYANLAALVHRAEKYEKSS 746 Query: 544 YSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + I +E+ K + VR+MTVH +KGLE PVVFL+DT Sbjct: 747 FRGLYQFIRFIEKMQEKNKDLAEPLATPVEDAVRVMTVHASKGLEFPVVFLLDTTKFFNY 806 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K+ L K + + K E R LYV +TRA Sbjct: 807 QDFQKRYIFEEQLGAGIQYVEPAENLKFETLPFQAIKQVRLKKALSEEMRKLYVALTRAE 866 Query: 660 DQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + + + + + D V + ++ + Sbjct: 867 QKLFLVGSYKNQADAFKTWQSGLTQSEMVLDPALRLVARGSLMDWVGRTLMRHPDMEAVF 926 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK---------------KLF 744 S K N +E + L ++ + Sbjct: 927 SEASERKRTIDHPAHFRLSWWNQETITQEVQETLAPVEEPKRLIAPDSNIDDLLKRLAYR 986 Query: 745 SPIKNDINEPYILNPSTI--------------------------------DTKGKTNLES 772 P + + S + + Sbjct: 987 YPYQKATQTTSYQSVSELKRLYNDPDDQQTTLLEWRSVSEKTNPQQYRYVQDELAKPKFL 1046 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS--ITR 830 + + G H +LQ+I + + K + ++E + I Sbjct: 1047 QETKPLASSIGTATHTVLQMIPLGMKPTQDTLALLIAELVKKQFFSEEIAKKIDRSSILW 1106 Query: 831 LLENPMMTTA--MSCDSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQNIF 879 + + S E S + P ++I G ID I Sbjct: 1107 FYQTELGELLNQFSDVVKREQPFSMLKEADTIFEGFDEPDAPLLIHGIIDGYIELADEII 1166 Query: 880 IFEYKTHHHVPQE---IEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVF 933 ++++KT + + + + QL +Y + L+ + NK + L+ + + Sbjct: 1167 LYDFKTDDVFGSQAQIEQKMRERYYGQLKLYCQALEKAL-NKPVRQTYLVLLKPKMIV 1223 >gi|329734888|gb|EGG71188.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU045] Length = 1218 Score = 364 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 153/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 307 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAHRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + T +G I+L +FRS + Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTESGL---RIDLSQNFRSRQE 476 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL + + ++ Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALIEASSEN------- 529 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ KI + Y+ I+ + K I+ I + + +Q Sbjct: 637 YQFTEEELAKIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672 + +K E RL+YV +TRA +QLI+ Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 876 Query: 673 ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698 + +S K Sbjct: 877 LIKYEKLAVSDTHIAVNERLTATNPFVLIYGILAKHQSPSLPNDQRFERDIDQLNSEVKP 936 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756 +++ I+ E ++ E + E +E + I ++ KI ++L +N Sbjct: 937 RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 996 Query: 757 LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791 S + K + E + G ++H ++Q Sbjct: 997 SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1056 Query: 792 VIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847 + + K+ + Y + +L +++ + I ++ P+ + + Y+ Sbjct: 1057 HLPFREQRLTKDELLQYIDGLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1116 Query: 848 EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894 E+ + +D+ II G ID I S + +YKT + E Sbjct: 1117 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1176 Query: 895 -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + + Q++ Y L+ + + L + + I Sbjct: 1177 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1218 >gi|329733963|gb|EGG70285.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus 21193] Length = 1217 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 156/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N + VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDSVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K + S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEHI----PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E I + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQFKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|169831437|ref|YP_001717419.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis audaxviator MP104C] gi|251764572|sp|B1I493|ADDA_DESAP RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169638281|gb|ACA59787.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis audaxviator MP104C] Length = 1230 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 152/1025 (14%), Positives = 299/1025 (29%), Gaps = 146/1025 (14%) Query: 25 YFQVSDINKYVSLSMETGNPT---ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81 V ++ + + G P A+ A + + L + FL FTP+ Sbjct: 227 EAAVFELRAALEAAKAPGGPAVYADALAAEVEGTARLAGLVAGDWEPLRAAFLAFGFTPR 286 Query: 82 KNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTYKMFKSTLASLTL----------A 130 ++++ DL + +K +++ +++ F + + L A Sbjct: 287 LPAARAGVDQELKDLCSRCRKKAKERIQNLKETFFARRPEELLSEMAALGPAMRRLAALA 346 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR------DVSAWIRYKIDQEINHILIDE 184 Y AK ++DF DL +L V + + + + +L+DE Sbjct: 347 ADFGEAYRTAKLARNLVDFADLEHYCLQILLAPGSTPEAPVPSPVAAGLREYYVEVLVDE 406 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QD + +Q ++R ++ LF VGD KQSIY F AEP L + R Sbjct: 407 YQDINAVQETILRLVSRQDAA-------APNLFMVGDVKQSIYRFRLAEPALFLEKYRAF 459 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR-----S 299 G I+L +FRS I+ V+ VF T + Sbjct: 460 DTGEDAGG--ARRIDLSHNFRSRESIIHAVNAVFRRIMTPAVGELAYDTAAELVCGGTPA 517 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 G V++ + ++ AR +A I + Sbjct: 518 QLEGSGPPVEVHLLGAPTSVGRDTAGTADDEPDRSDEADLTAVQREARLVAGIIRRL--- 574 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 G + + +DI+VL+R I + + ++ Sbjct: 575 ---AGLGGECTVPYRDIVVLMRATTGKAG---TYLEEFRRQNIPAYAKVGTGYFEAVEVE 628 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 +++L + I + D+ +L+SPL ++ + E + + G Sbjct: 629 TVLSLLKVIDNPHQDIPLAGVLRSPLVGLGAAELAAVRLADKEGDFFRAVVAAAGQGGRL 688 Query: 479 -SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFT 536 + ++ + + A+ S D + G L + Sbjct: 689 GAVLAGFLERLEKWRSQARCGSLADLIWDVYRTTGYYDYVGGLPGGAGRQANLRALYDRA 748 Query: 537 LRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 + E ++ L + +E A + + N VRIM++H AKGLE PVV L Sbjct: 749 RQYEATAFRGLFRFLRFIELLQEGGQDLGPAPALAESENVVRIMSIHQAKGLEFPVVILA 808 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 D G + + ++ + L P + + + L++ E R+L Sbjct: 809 DMGRRFYMPDLNGEVLLHKDLGLGPYFVDPGARVSHPTAAWHVVRERLRREQLAEEMRIL 868 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV MTRA ++LI+ + + + D + + Sbjct: 869 YVAMTRARERLILTGSAGRLEQAVLRWS-------HAAAGDGETLPVPVLAEAESFLDWV 921 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQK---IPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 HP+ PL R + ++ D+ E +P T Sbjct: 922 MPVLMAHPDGEPLRRLAVRSRPAAGTPKDRSRWEVHLHRPEDLEEAAGADPDTAAVLESL 981 Query: 769 NLESLLSDNQTFNRGLIIHKLLQV------------------------------------ 792 + + + + +H+ L Sbjct: 982 RRLAPIPADGGLD--EAVHRALSWHYPWSALASCGAKISATEVKRRFAAAAAGEEEVPAV 1039 Query: 793 IFTLPEHKRKNFIT--------------SYCTKNAKLWPAKEYKNLLLSI---------- 828 R F+ ++ L + + Sbjct: 1040 FPYRAPPARPAFLETARGLSPQAFGRAMHVVLQHLDLAGDLSVDGIRAQVAGLEEREFLT 1099 Query: 829 ---TRLLENPMMTTAMSCD----------SYSEVSVSGKINC----------PKKDIIIS 865 R ++ + + E + P++ +++ Sbjct: 1100 ATEARAIDAEKLAGLFAGGLGRRLAGALWVRREWPFCLVVPAHEIYPGLEGHPEERVMVQ 1159 Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 G ID + + + +YKT P + + QL +Y + ++ + L Sbjct: 1160 GIIDCLFAEPDGLVLVDYKTDRVGPGGEAALADRYRGQLDLYARAVEAVLRRRVKERYLF 1219 Query: 926 YVSEP 930 V Sbjct: 1220 LVMTG 1224 >gi|258424346|ref|ZP_05687226.1| recombination helicase AddA [Staphylococcus aureus A9635] gi|257845359|gb|EEV69393.1| recombination helicase AddA [Staphylococcus aureus A9635] Length = 1217 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 157/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L + +F E ++ D + + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLATTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELALIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSKQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|257425017|ref|ZP_05601444.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 55/2053] gi|257427682|ref|ZP_05604081.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 65-1322] gi|257430317|ref|ZP_05606700.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397] gi|257433014|ref|ZP_05609374.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410] gi|257435918|ref|ZP_05611966.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M876] gi|282913739|ref|ZP_06321528.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M899] gi|282923655|ref|ZP_06331335.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C101] gi|293500781|ref|ZP_06666632.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 58-424] gi|293509732|ref|ZP_06668443.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M809] gi|293524319|ref|ZP_06671006.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M1015] gi|257272587|gb|EEV04710.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275875|gb|EEV07348.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 65-1322] gi|257279094|gb|EEV09705.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397] gi|257282429|gb|EEV12564.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410] gi|257285109|gb|EEV15228.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M876] gi|282314523|gb|EFB44913.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C101] gi|282322771|gb|EFB53093.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M899] gi|290921282|gb|EFD98343.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M1015] gi|291095786|gb|EFE26047.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 58-424] gi|291467829|gb|EFF10344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M809] Length = 1217 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 160/1024 (15%), Positives = 317/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + +S + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D T +L D + I Q + IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFTLQILTNEDGSPSEIAESYRQHFHEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 F G R KDI++L R + + I N R + ++ Sbjct: 557 FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|307274585|ref|ZP_07555765.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134] gi|306508737|gb|EFM77827.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134] Length = 1263 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 157/962 (16%), Positives = 302/962 (31%), Gaps = 135/962 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ +L + + + + E R LYV +TRA +L Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 664 ICKHSN--------------------TSNEKKSNQRTWYDMVYDS--------------- 688 + + + ++ + + V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 689 -----FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 I+ N I E+ + ++ Sbjct: 950 SNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLSF 1009 Query: 744 FSPIKNDINEPYILNPSTIDTKGKTN---------------------------------- 769 P + + S I Sbjct: 1010 NYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSKP 1069 Query: 770 -LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 KFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNLE 1129 Query: 827 SITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISIS 874 I + + + E S I + D++I G ID Sbjct: 1130 QIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIEL 1189 Query: 875 QQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 DNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGGV 1249 Query: 932 VF 933 + Sbjct: 1250 II 1251 >gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1] gi|251764523|sp|A4J4E3|ADDA_DESRM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134051975|gb|ABO49946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Desulfotomaculum reducens MI-1] Length = 1244 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 153/1047 (14%), Positives = 331/1047 (31%), Gaps = 145/1047 (13%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERF 66 I K ++ + + + L+ + G P + + L E+ + Sbjct: 217 QIKKTIFQEVEGVLGLLKQAQWLAKQPGGPEPYSKTLTEDIINIKPLTNNDWDASWEKLY 276 Query: 67 SLLSSFFLTQ----KFTPQKNIITQE--INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 +++ ++ + + + + K+ + + + + + Sbjct: 277 RSITAIKWSKLSPCRGEIDDQLKNKAQNLRNKAKEKFNDIINTYFSAEPTVILEDLRSLQ 336 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL--KKRDVSAW----IRYKID 174 L Y++ K+ ++DF DL +L K+ D + + + ++ Sbjct: 337 PLIADLAKLTIEFMELYQKKKQAKGLVDFGDLEHYCLTILLDKENDAAEFRPSAVAIELQ 396 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 Q+ +L+DE QD + +Q ++R + S F VGD KQSIY F AEP Sbjct: 397 QQYAEVLVDEYQDINAVQETILRLV-----------SKKNNRFMVGDVKQSIYRFRLAEP 445 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDST 292 K L + + G + I L +FRS +++ V+ +F A ++ D Sbjct: 446 KLFLSKSELYANTDNCQG---TRIGLSKNFRSRLEVVNAVNFIFRQIMTKKAGEITYDEL 502 Query: 293 TTIRHRSSRIG--------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + V L ++ +Q + Q E + + S Sbjct: 503 EELHCGADYPQAEDVKTATGPVEVYLIDRKDAQLEEQNTDSAEEKLTDGEEQEDLDSDQA 562 Query: 345 LARRIAYTISNMIGT----------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 AR I I M+ GK R + +DI++L+R Sbjct: 563 EARLIGRRIQAMVKGTDKAMGPEFKVWDKEIGKYRPVSYRDIVILLRATTGRAN---TFL 619 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + + + ++ ++L + I + D+ +L+SP+ D+ Sbjct: 620 EELRTMGVPTYAEVGTGYFEAVEVETFLSLLKIIDNPRQDVPLAGVLRSPVVGLKASDLA 679 Query: 455 KICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 +I E + A ++ + A+ + D L+ Sbjct: 680 EIRLCSKEGDFYDAVRIAAAADLGDVAVTLTKFLRQLENWRSRARRDTLADLIWLLYRET 739 Query: 512 KGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAH 565 G + L + + E S+ L + +E+ R+ Sbjct: 740 GYYDYVGGMVGGTQRQANLRVLYHRAKQFEATSFRGLFRFLRFVERLKDSGSDLGAARSL 799 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 S N + VRIM++H +KGLE PV+F+ G + K M + L P I + Sbjct: 800 SENEDVVRIMSIHKSKGLEFPVLFVAGLGKRFNMMDLNKDMLMHKELGLGPQIIHLGSRV 859 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------------------ 667 + + + ++K + E R+LYV +TRA ++LI+ Sbjct: 860 SYPSLPKLLIKQQIRKESVAEEMRVLYVALTRAREKLILVGAVRDLEKSLEKWCTSTYQA 919 Query: 668 -SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 + + + + D + + +++ + + Sbjct: 920 GWTLPDAELMAAKCYLDWLCPAIARHHNGHELRSLAKTEGQPFSEVATDPSAWQLVFQAL 979 Query: 727 E-----------------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 + E + +++ ++L + + Sbjct: 980 KDIKNQTQENKEQSQGLLVKIKDMEPFEDAGLIKEVERRLSWQYPRAEVTTRPAKAAVTE 1039 Query: 764 TK---------------------GKTNLESLLSDNQTFNRGLIIHKLLQVIF--TLPEHK 800 K G+ RG IH ++Q I LP+ + Sbjct: 1040 VKHKFDELARQEAGVMSYRPKISGRPRFLQQDKGLTPAERGSAIHLVMQHIPLDKLPDEE 1099 Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINC-- 857 + + L P + IT + + + + E+ S + Sbjct: 1100 GVQVLLQNLIQKEILLPQQAAAINPNHITGFFASSIGQRVLQAPKVERELPFSLALPATE 1159 Query: 858 --------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909 + +++ G ID + + +YK+ P + + + Q+++Y + Sbjct: 1160 VYQELPECGDEMVLVQGVIDCLVDEGDGFLLIDYKSDAVYPGQDSPV-DRYRGQINLYAR 1218 Query: 910 ILKDSYPNKSLVCLLIYV-SEPKVFII 935 ++D K + +IY+ + ++ I Sbjct: 1219 AVQDIL-GKPVKDRVIYLFNNGQIVHI 1244 >gi|312113012|ref|YP_004010608.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii ATCC 17100] gi|311218141|gb|ADP69509.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii ATCC 17100] Length = 1282 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 213/1045 (20%), Positives = 365/1045 (34%), Gaps = 113/1045 (10%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ FGL+ NE+ + + I + V++ E G T + A +L+ A Sbjct: 228 LRRIFGLAANETAASLIDRAAAV--LSDETIREIVAIFAE-GGKTEAEIAASLRLAMSAP 284 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + + + T+ P+K + T +++P L E+L ++Q +F + + K+ Sbjct: 285 DAASKCACIKKALGTKGGEPKKRLATAPTQRRAPSLCERLSRAQTDFFDLDRKICAAKVV 344 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 +T A LA + YE K+ +DF+DLI T LL + D + W+ Y++D I+H+ Sbjct: 345 AATAALFRLAAAIFDAYEAEKRARGAVDFDDLIEKTLALLHREDAAEWVLYQLDGRIDHV 404 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDTS QW ++ +LT +FF G++ ++ TLFAVGDEKQSIY F GA P+ + Sbjct: 405 LVDEAQDTSPEQWAIVAALTAEFFSGESARATMPTLFAVGDEKQSIYGFQGARPEFLAAF 464 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP---------ENAQGLSEDS 291 +++A F I L LSFR+ A +L+ VD V + + +D Sbjct: 465 GAAYEQKARATQMPFRTIGLDLSFRTLAPVLSAVDHVSAALGGGLSTAPMPHIANRDDDG 524 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ---------ESWTSYFDSLPQESSA 342 + R + +W S + W +L +E Sbjct: 525 GLVELWQPERGARQDKGDVWVPEDDAATSAKPAEALASRIATKVRGWLDGGAALGREGRP 584 Query: 343 SILARRI---------AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT-FL 392 I A + + + + G R+ D+ V+ L+ Sbjct: 585 VDPGDIIILLKKRQPMASLLQAALKREGVPVAGADRMSLVDDLAVMDLLALGDALLQPED 644 Query: 393 TRFLKNDYKISVVGNDRFILTD--HLAIKDLMALGRFILSQED---------DLSFVCML 441 L K + G L + L A E L+ L Sbjct: 645 DLALAAALKSPLFGLSDDDLFALRNPREGSLWAALGARAEAEAVGRFAEAAARLASWRDL 704 Query: 442 KSPL--FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499 L F+F + +++ + G + + + + Sbjct: 705 AHRLSPFDFYAQVLDHPLPAASDSDDGRGGQADDPHIGGASVASFGEDTNHFRGVGGDDM 764 Query: 500 PHDFFTLILGAK-------------KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546 I + GR F +R G + + LDEF N Sbjct: 765 STGKIDSISLSTETRYASAAAHTPPDGRAAFGARLGPQCFEALDEFSNLAETFSAGGRGD 824 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L + + + +KR EVRIMTVH AKGLE+P+V L D + Sbjct: 825 LADFLVFVRHGAAEVKRETDQATREVRIMTVHGAKGLEAPIVILADACGAR--AGRQPPI 882 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 ++ D +P+W + V+D + L ++ + E RLLYV MTRA D+L I Sbjct: 883 LLLEDRADGVRVPVWTIKGAGALPPVADQKEELAEAARRESGRLLYVAMTRARDRLYIAG 942 Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 + + +L + + +H E P+ Sbjct: 943 SHTGDTLPEGCWFDTVKSALEPHAAGGVDDHGRLFWRLGSELHGVSGAGGNHGEPMPVAL 1002 Query: 727 EETIKQLMDEQKIPKKLFSPIKNDI----------------------------------- 751 + + L + Sbjct: 1003 PDWAGKSAPAGNSRVLLSASALVPPALIRNRFDAETLTDIQRRAASGSPNDALKSSREPA 1062 Query: 752 --------------NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 P + S +D G ++ G+ IH+LL+++ LP Sbjct: 1063 SLNAHQPPVDAFFLRAPALETASDLDEWGPNP-HDGVARKVAQQTGIFIHRLLEILPGLP 1121 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857 E +R + P + S+ RLL P + SE ++ + Sbjct: 1122 EGRRGEAAQLAAAAFREALPGNRIEAAFESVERLLATPHLRP-GDKRVLSEAGIAIALES 1180 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ I+ G+ D+ISI I + +YK+ + +P ++AQL+ Y L YP Sbjct: 1181 NERAAIL-GQCDRISIGTDGIELLDYKSGTLSDGDP--LPAVYVAQLAAYRLALGQLYPA 1237 Query: 918 KSLVCLLIYVSEPKVFIIPQNKLNK 942 ++ LI + L+ Sbjct: 1238 ANIHASLINARSASLLEADAEALDA 1262 >gi|257866180|ref|ZP_05645833.1| UvrD/REP helicase [Enterococcus casseliflavus EC30] gi|257872511|ref|ZP_05652164.1| UvrD/REP helicase [Enterococcus casseliflavus EC10] gi|257800114|gb|EEV29166.1| UvrD/REP helicase [Enterococcus casseliflavus EC30] gi|257806675|gb|EEV35497.1| UvrD/REP helicase [Enterococcus casseliflavus EC10] Length = 1225 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 150/1018 (14%), Positives = 312/1018 (30%), Gaps = 131/1018 (12%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77 + ++ + + + T L +TL+ ++ + + + + Sbjct: 235 AAHLLQAAQDYARSDEAMEKAAQL-IDTELGMVETLKALLDADDVDGFYEQIQTLRFGRY 293 Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMFKSTLASLTLAK 131 +K +E++++ L++ KK ++ ++ + + Sbjct: 294 PAFRK-PEQKELSQEIKPLRDDAKKLVEQLKATFPYPPAEMMELLHRSAPVVEKMAAMTE 352 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 ++E K LDF DL T +L+ + +L+DE QD + + Sbjct: 353 AFMKAFQERKLSKGRLDFNDLEHFTLQILQGDGSGSEASTYYRDRFEEVLVDEYQDVNRL 412 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q ++ + + +P +F VGD KQSIYSF A+P + + + Sbjct: 413 QEAILYWVRQ-------VDHNPGNMFMVGDVKQSIYSFRLADPTLFIEKYLAFET----- 460 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L +FRS +D+L + VF + + + + Sbjct: 461 ENGGRRIVLAENFRSRSDVLDFTNLVFQQLMDERVGQIPYDEAAALITGFPDFPESEAFA 520 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---K 368 +++ + +Q + + A I +I + + + K Sbjct: 521 TELLLYEKEHESEEQLI----------DDKTEGEMQITALKIRELIESKFMIYDKKAKTN 570 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R I DI++L RK+ +I + + + I + ND I+ +++L + I Sbjct: 571 RPITYNDIVLLTPTRKNNLVILDVFK----QFGIPMAVNDAQNYFQATEIQTVVSLLQII 626 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----V 484 + D+ V +L+SP+ +ED + +I ++ + S Sbjct: 627 DNPYQDIPLVAVLRSPIVGLTEDQLAEIRLANRSSDYYDAVLDYHGQQEASPLWQTVDGF 686 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543 + + + A+ I + G + L ++ + E++S Sbjct: 687 LTKLEQWREEARRLPIPTLLWQIYEDTAYLDYVVGLPAGQQRYANLAALVHRAEKYEKSS 746 Query: 544 YSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + I +E+ K VR+MTVH +KGLE PVVFL+DT Sbjct: 747 FRGLYQFIRFIEKMQEKNKDLAEPLATPVEEAVRVMTVHASKGLEFPVVFLLDTTKFFNY 806 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K+ L K + + K E R LYV +TRA Sbjct: 807 QDFQKRYIFEEQLGAGIQYVEPAENLKFETLPFQAIKQVRLKKALSEEMRKLYVALTRAE 866 Query: 660 DQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + + + + + D V + ++ + Sbjct: 867 QKLFLVGSYKNQADAFKTWQSGLTQSEMVLDPALRLVARGSLMDWVGRTLMRHPDMEAVF 926 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK---------------KLF 744 S K N +E + L ++ + Sbjct: 927 SEASERKRTIDHPAHFRLSWWNQETITQEVQETLAPVEEPKRLIAPDSNIDDLLKRLAYR 986 Query: 745 SPIKNDINEPYILNPSTI--------------------------------DTKGKTNLES 772 P + + S + + Sbjct: 987 YPYQKATQTTSYQSVSELKRLYNDPDDQQTTLLEWRSVSEKTNPQQYRYVQDELAKPKFL 1046 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS--ITR 830 + + G H +LQ+I + + K + ++E + I Sbjct: 1047 QETKPLASSIGTATHTVLQMIPLGMKPTQDTLALLIAELVKKQFFSEEIAKKIDRSSILW 1106 Query: 831 LLENPMMTTA--MSCDSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQNIF 879 + + S E S + P ++I G ID I Sbjct: 1107 FYQTELGELLNQFSDVVKREQPFSMLKEADTIFEGFDEPDAPLLIHGIIDGYIELADEII 1166 Query: 880 IFEYKTHHHVPQE---IEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVF 933 ++++KT + + + + QL +Y + L+ + NK + L+ + + Sbjct: 1167 LYDFKTDDVFGSQAQIEQKMRERYYGQLKLYCQALEKAL-NKPVKQTYLVLLKPKMIV 1223 >gi|282903504|ref|ZP_06311395.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus C160] gi|282908262|ref|ZP_06316093.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282918665|ref|ZP_06326402.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C427] gi|283957705|ref|ZP_06375158.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus A017934/97] gi|295427450|ref|ZP_06820085.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus EMRSA16] gi|282317799|gb|EFB48171.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C427] gi|282327927|gb|EFB58209.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282596459|gb|EFC01420.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus C160] gi|283791156|gb|EFC29971.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus A017934/97] gi|295128838|gb|EFG58469.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus EMRSA16] gi|312438670|gb|ADQ77741.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH60] gi|315194499|gb|EFU24891.1| hypothetical protein CGSSa00_12270 [Staphylococcus aureus subsp. aureus CGS00] Length = 1217 Score = 363 bits (931), Expect = 8e-98, Method: Composition-based stats. Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + +S + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q + IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 F G R KDI++L R + + I N R + ++ Sbjct: 557 FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|49483127|ref|YP_040351.1| hypothetical protein SAR0929 [Staphylococcus aureus subsp. aureus MRSA252] gi|81651446|sp|Q6GIC1|ADDA_STAAR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49241256|emb|CAG39935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] Length = 1217 Score = 363 bits (931), Expect = 9e-98, Method: Composition-based stats. Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + +S + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q + IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 F G R KDI++L R + + I N R + ++ Sbjct: 557 FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKKLVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|253731575|ref|ZP_04865740.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724818|gb|EES93547.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1217 Score = 363 bits (931), Expect = 9e-98, Method: Composition-based stats. Identities = 156/1024 (15%), Positives = 315/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + + + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + G R KDI++L R + + I N R + ++ Sbjct: 557 YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N ++ E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKSIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K + S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADVKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|282905282|ref|ZP_06313139.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus Btn1260] gi|282331689|gb|EFB61201.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus Btn1260] Length = 1217 Score = 363 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + +S + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSRETDDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q + IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 F G R KDI++L R + + I N R + ++ Sbjct: 557 FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|297590190|ref|ZP_06948829.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MN8] gi|297576489|gb|EFH95204.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MN8] Length = 1217 Score = 363 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + +S + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q + IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 F G R KDI++L R + + I N R + ++ Sbjct: 557 FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|293380925|ref|ZP_06626959.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1] gi|290922500|gb|EFD99468.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1] Length = 1202 Score = 363 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 169/993 (17%), Positives = 317/993 (31%), Gaps = 129/993 (12%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFS----LLSSFFLTQKFTPQKNIITQEINKKSP 94 + AQ L + + LL S T + + + +++ Sbjct: 242 LAKAKEAFTLFAQNLDHFVFALENDADYDKQRKLLRSCVFTANY-RKSSKWDEDVLNFYE 300 Query: 95 DLKEKLKKSQDEFIK------IRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKN 144 DL++ ++++ D K+ + + L + + K+ Sbjct: 301 DLQKLKDEAKNLVFDTFTSFFAVDEQEQIKVMQRGQKIVAAIAKSELALIDRFNKLKRSE 360 Query: 145 CVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 +LD+ D+ +L + S R + ILIDE QD + +Q +I+ + Sbjct: 361 NLLDYSDMEQLAYQILSQDTSNSQMAREFYQNKFKEILIDEYQDINALQENIIQQI---- 416 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + TLF VGD KQSIY F AEP L++ A + ++ I L + Sbjct: 417 -----KNKDKNTLFMVGDVKQSIYGFRQAEPSLFLKKYHDF---ANDDNKQTKRILLSDN 468 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 FRST + +V++VF ++ D G + + ++ + + Sbjct: 469 FRSTEPVTKIVNQVFKSVLSSDFGGIDYQKE-----------GQLIFGAKYYPENTPKAS 517 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381 + + + + I + + K R ++ DI +L R Sbjct: 518 EVIVHEKKNSSNEDENEIDFSEIQMVLARIKQLKEERVQIFDSKTGMRELRYSDIAILTR 577 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 R D I + D + +M + I + + D+ V +L Sbjct: 578 SRSD----NLEIMQEFAKQDIPLFVTDAKNYFQTFELTVMMNYLKIIDNPDQDIPLVSVL 633 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCS 499 +SPLFNF E D+ KI + + + ++ + + + +L A Sbjct: 634 RSPLFNFGEKDLAKIRIKSKNSTFYSALTSYVGVGDELSTRIKDFLNQLADLRKFATAHR 693 Query: 500 PHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---- 554 + I + + G + L+ E + L + I+ + Sbjct: 694 ISELIWSIYARTNLLEIMTALPNGEQRRVNLEALYERAASYENAGFKGLYQFINFINRMR 753 Query: 555 -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 Q N VR+MT+H +KGLE P+VF V + I + Sbjct: 754 QSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHKYQMRDLKGNYVI---SS 810 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 D GI + + + + + K+ EE R+LYV +TRA +LI+ ++ Sbjct: 811 DSIGITLREEHYRIDSLVKAMGNVTKKRQLLEEEARILYVALTRAKQKLILVGDVPNLDK 870 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLT---NSINKDEWIAYEWST-------------- 716 + T + + D+ L+ ++ D +A + S Sbjct: 871 RVKEWSTELNQIGQLSLADKLSSTSPLSFMGPALALDRHLAVKMSDITNSLDKSQSFLYI 930 Query: 717 ----HHPENTPLEREETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + E ++ ET L K + P K+ S I Sbjct: 931 NYENANGELPDYQKAETSNDKTQSNLLNQTTKRLYQFNYPFKDASETTAYQAVSEIKKAF 990 Query: 767 KTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF---TLPE 798 +E+ L + G H +LQ E Sbjct: 991 NDPIETELENAHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHMILQYYDYQGNGAE 1050 Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS--- 852 + + I + K + +L + + E+ S Sbjct: 1051 DQLEVEIQELIKQ--KKLNPEIVSSLKKDQIEWFVHSNFAEEFWQKPENLKREIDFSSLI 1108 Query: 853 ------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTHIA 902 + P I++ G ID + I +F+YKT H + IE I + Sbjct: 1109 SAKTLFKNFSDPNAKILVHGTIDGYFVKNDGIILFDYKTDHVDQSHLSESIELIKEKYTG 1168 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL +YE+ + + K + LI + + + Sbjct: 1169 QLRLYEQAINEFSQKKVIGKYLILLDAKQAVEV 1201 >gi|282910543|ref|ZP_06318347.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WBG10049] gi|282325935|gb|EFB56243.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WBG10049] Length = 1217 Score = 363 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 L++ E + + + +S + + + +K+A + Sbjct: 248 HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L ++ K++I + + + LK + Sbjct: 297 VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184 + K + + + K+ +LDF D +L D + I Q + IL+DE Sbjct: 343 LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +++ + K LF VGD KQSIY F A+P + + + Sbjct: 403 YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302 G I+L +FRS ++L+ + +F E + D + + + Sbjct: 456 TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 V L V + + + + A I + +++ + Sbjct: 513 ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 F G R KDI++L R + + I N R + ++ Sbjct: 557 FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478 +++ R I + D+ V +++S ++ F ED++ +I + Y+ I + N Sbjct: 613 VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533 K + + I ++ + Q F G L Sbjct: 673 AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588 N + E +S+ L + I +++ K N N VR+MT+H++KGLE P V Sbjct: 733 NKAIEFENSSFRGLYQFIGFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 + + + + + +K E Sbjct: 793 IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852 Query: 649 RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687 RL+YV +TRA +QL + + Y ++ Sbjct: 853 RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912 Query: 688 SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729 + +K K I S + E+ E + Sbjct: 913 HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766 + + + K P ND +P + S + T Sbjct: 973 NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + S + G ++H ++Q + E + + Y + + A K++ Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092 Query: 825 L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875 I + + + + + Y E+ ++ +D+ II G ID I + Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152 Query: 876 QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 + +YKT E + + Q+ Y+ L+ NK + L + Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211 Query: 929 EPKV 932 + Sbjct: 1212 FGTL 1215 >gi|168181307|ref|ZP_02615971.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf] gi|237793761|ref|YP_002861313.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str. 657] gi|259710033|sp|C3L047|ADDA_CLOB6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|182675388|gb|EDT87349.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf] gi|229262225|gb|ACQ53258.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str. 657] Length = 1279 Score = 363 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 159/992 (16%), Positives = 325/992 (32%), Gaps = 150/992 (15%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 + + +++ K +L+ + + + + ++ S A L + Sbjct: 288 KDADKEAKERVKKLRDKVKKRIIELRITLNSYENEFTKKEFIFLYPSMKALSNLVILFDK 347 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSL 190 YE K++ ++DF D+ +L +D + + I ++ +LIDE QD++L Sbjct: 348 KYEAKKRERDLIDFNDIEHLCLSILTDKDSKGHIIPSDIALDYRKKFAEVLIDEYQDSNL 407 Query: 191 IQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVGDEKQSIYSFHGA 232 +Q ++ ++ + F VGD KQSIY F A Sbjct: 408 VQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPHIGLDIPNRFMVGDVKQSIYRFRQA 467 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P+ L + G K ++L +FRS +++ V+ +F + D T Sbjct: 468 KPEIFLDKYNEYS---EEEGIKNRKVKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYT 524 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + ++ ++ D + + R +A Sbjct: 525 EEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQLEGRLVAKK 584 Query: 353 ISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 I ++G + G+ R +Q +DI++L+R + + I V Sbjct: 585 IQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPV---FVEELAKEGIPVF 641 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-------- 457 + D IK +++L + I + D+ + +L+SP+ +F++D++ I Sbjct: 642 ADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFNDDELIDIRMVNKNIAF 701 Query: 458 ----------TQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQ 496 + + ++ Y + K N + I+ + + Sbjct: 702 YECMEIIYRLYKNEKLDSYYSFYIKDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSI 761 Query: 497 FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554 +F + + + G + L + + SY L I+ + Sbjct: 762 NIDIDEFIWFLYMETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFIN 821 Query: 555 ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + N N +RIM++H +KGLE PVV L TG K + Sbjct: 822 KLKFSSGDMGSAKILGENENVIRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHR 881 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 L P + + + + + ++ T E R+LYV +TRA ++LII N Sbjct: 882 DLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINN 941 Query: 671 SNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTN---------S 703 ++ + +T+ D + + + + Sbjct: 942 MDKAVESWLNLSDDKNKVPEYAVMNGKTYLDWIGPAIIKHKDAVSFREELKMSSELSNIV 1001 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------ 751 +K +W W+ +E +E ++ + S K +I Sbjct: 1002 DDKSKWKIELWNKKELLKEKVEEDEVEISEKIKETLMNLGESNYKEEIYKRLSFKYKYDN 1061 Query: 752 --NEPYILNPSTID------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 + P L+ S + K RG IIH +Q Sbjct: 1062 ASSIPTKLSVSDVKKQFILDEKENTEELFKKVELRKPMFMGEKKKISPSERGTIIHLFMQ 1121 Query: 792 VIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYS 847 + + K I + + + N I + + + + S + Sbjct: 1122 HLDLKKAENKEDIKEQINRLIEREFITYEQSKVINPYK-ILKFCRSELGKRMINSNNINR 1180 Query: 848 EVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 E+ S +I + +II G ID ++ + + +YKT + +IE Sbjct: 1181 EMPFSIEIPAVEIYRELDKNIYKDEKLIIQGIIDCYFEEEEGLVLLDYKTDYV--NDIEE 1238 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 I + Q+ YE+ L K++ +Y+ Sbjct: 1239 IKNRYEIQIKYYEEALNRI-TGKTVKDKYLYL 1269 >gi|260589313|ref|ZP_05855226.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583] gi|260540394|gb|EEX20963.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583] Length = 1223 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 156/1024 (15%), Positives = 331/1024 (32%), Gaps = 147/1024 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 I ++ + + + +S E P + + + L++ +E Sbjct: 216 IKNEVKQEIKEASMLLKQALEISKEPDGPVFYIGLLEDEVSELEKLERTENFFEWKEMLD 275 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF----------NTY 117 L L +K ++++ + + +L+ +++++ +++R+ N Sbjct: 276 KLEFKRLPAGKKAEKELVSESRQELAKNLR---NEAKEQIKALKERYFQETAEEMLENLQ 332 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKI 173 + + + L Y E KK+ +LDF DL ++L K++D ++ Sbjct: 333 RAGEPVGVLVDLTLAFMKLYREKKKEKNILDFGDLEHYALEILIHHTKEKDERTDAAREL 392 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 ++ I+IDE QD++L+Q +++ +F VGD KQSIY F A Sbjct: 393 SKKFAEIMIDEYQDSNLVQEKLL-------TSVSKIEDGIYNIFMVGDVKQSIYRFRLAR 445 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P + AG+ I+L +FRS A++L V+ +F + Sbjct: 446 PDL---FMEKFKTYPQEAGENCLRIDLHKNFRSRAEVLEGVNYLFYQIMG------EDLG 496 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 + + S+ G + + + P E + + AR +A I Sbjct: 497 GVEYDSTAALYPGRT-----FPPKQEEESEPATEVLLLEDEEENT---RELEARMVALRI 548 Query: 354 SNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 + G + + R + D +L+R + + N I + Sbjct: 549 GELAGKYLVLDKKTEEYRPAKYSDFTILLRTMSGWA---ETFKKILNSCGIPASVTTKTG 605 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEY 469 + ++ + + + D+ L FS ++ +I +E YE Sbjct: 606 YFSAQEVTTVLDYLKILDNPMQDIPLAAALHGLPDGFSFQELAEIKVLGMENEKNGFYEA 665 Query: 470 ---IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEV 525 +K ++ K + +L + H+ A S G + Sbjct: 666 LLLGEKLSSPLGEKIRRFFAVYRDLRRKVPYTPMHELIWDFYDATDFLVYQQSFVSGEQR 725 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTA 580 L E SY L I +E Q S N + VRIM++H + Sbjct: 726 KANLLMLAEKARDYESTSYRGLFNFIRYIENLKKYQVDFGEANTLSENEDTVRIMSIHGS 785 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P+VF+ G Q+ + + + P L + ++R + + + + Sbjct: 786 KGLEFPIVFVCGMGKQINMQDARESIVLHPDLGIGSPYVDTQLRIRTRTILQKAVQREIL 845 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTW 681 + E R+LYV +TRA ++LI+ ++ + + +++ Sbjct: 846 LESLGEELRILYVALTRAKEKLILTGVTSKLEDTLKSFEMLKKQEEERLPYGLRVKGKSY 905 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 D V + +K + + ++ E + + Sbjct: 906 LDWVLAALARHRAMKPLYEMYDFSVYSLNEMYDREPDFTVRQVQPLELVLDEAQLRTEEM 965 Query: 742 ---------------------------KLFSPIKNDINEPYILNPSTIDTKGKTNLE--- 771 P + + P L S I + E Sbjct: 966 LKKGELLLWDSSEVYDEKWRKLFRDSFSYEYPYQAEGAIPAKLTVSEIKRMQSADTEESE 1025 Query: 772 -----------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814 + + +G + H++ + + + K I Sbjct: 1026 ILLEKEETEEIVPLFMQETKEELKGAAKGTLYHRVWENL-DYEKIDTKEQIEEQLEN--M 1082 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINC--------PKKDI 862 L ++ + R +NP+ + Y E + +++I Sbjct: 1083 LTTEEKKSIWISDFYRFAKNPLAVRMKAAAQRGQLYREQPFVIAMPANQMKKEYETEEEI 1142 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G ID + + + +YKT + + + + Q+ Y+K L+ ++ + Sbjct: 1143 LVQGIIDAYFEEEDGLVLVDYKTDKVQKGQEKELIEKYKVQMRYYKKALEMI-TDREVKE 1201 Query: 923 LLIY 926 + IY Sbjct: 1202 IYIY 1205 >gi|257887557|ref|ZP_05667210.1| UvrD/REP helicase [Enterococcus faecium 1,141,733] gi|257823611|gb|EEV50543.1| UvrD/REP helicase [Enterococcus faecium 1,141,733] Length = 1240 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 160/1001 (15%), Positives = 325/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +E+ ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEDAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQMEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ AW+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ +DI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKDRPIEYRDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658 Query: 451 DDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + A+ K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVLAYQASNEDELAVKLEHFGKQLDHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704 + + + + + ++K Sbjct: 899 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQYSNVQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QSIIEQRQLLAEKELVNLDQQVKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + N K + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S ++ + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238 >gi|227878665|ref|ZP_03996580.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus JV-V01] gi|256843261|ref|ZP_05548749.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN] gi|256850382|ref|ZP_05555810.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus MV-1A-US] gi|262046470|ref|ZP_06019432.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US] gi|312978152|ref|ZP_07789896.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05] gi|227861729|gb|EEJ69333.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus JV-V01] gi|256614681|gb|EEU19882.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN] gi|256712779|gb|EEU27772.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus MV-1A-US] gi|260573341|gb|EEX29899.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US] gi|310894870|gb|EFQ43940.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05] Length = 1202 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 169/993 (17%), Positives = 317/993 (31%), Gaps = 129/993 (12%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFS----LLSSFFLTQKFTPQKNIITQEINKKSP 94 + AQ L + + LL S T + + + +++ Sbjct: 242 LAKAKEAFTLFAQNLDHFVFALENDADYDKQRKLLRSCVFTANY-RKSSKWDEDVLNFYE 300 Query: 95 DLKEKLKKSQDEFIK------IRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKN 144 DL++ ++++ D K+ + + L + + K+ Sbjct: 301 DLQKLKDEAKNLVFDTFTSFFAVDEQEQIKVMQRGQKIVAAIAKSELALIDRFNKLKRSE 360 Query: 145 CVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 +LD+ D+ +L + S R + ILIDE QD + +Q +I+ + Sbjct: 361 NLLDYSDMEQLAYQILSQDTSNSQMAREFYQNKFKEILIDEYQDINALQENIIQQI---- 416 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + TLF VGD KQSIY F AEP L++ A + ++ I L + Sbjct: 417 -----KNKDKNTLFMVGDVKQSIYGFRQAEPSLFLKKYHDF---ANDDNKQTKRILLSDN 468 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 FRST + +V++VF ++ D G + + ++ + + Sbjct: 469 FRSTEPVTKIVNQVFKSVLSSDFGGIDYQKE-----------GQLIFGAKYYPENTPKAS 517 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381 + + + + I + + K R ++ DI +L R Sbjct: 518 EVIVHEKKNSSNEDENEIDFSEIQMVLARIKQLKEERVQIFDSKTGMRELRYSDIAILTR 577 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 R D I + D + +M + I + + D+ V +L Sbjct: 578 SRSD----NLEIMQEFAKQDIPLFVTDAKNYFQTFELTVMMNYLKIIDNPDQDIPLVSVL 633 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCS 499 +SPLFNF E D+ KI + + + ++ + + + +L A Sbjct: 634 RSPLFNFGEKDLAKIRIKSKNSTFYSALTSYVGVGDELSTRIKDFLNQLADLRKFATAHR 693 Query: 500 PHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---- 554 + I + + G + L+ E + L + I+ + Sbjct: 694 ISELIWSIYARTNLLEIMTALPNGEQRRVNLEALYERAASYESAGFKGLYQFINFINRMR 753 Query: 555 -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 Q N VR+MT+H +KGLE P+VF V + I + Sbjct: 754 QSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHKYQMRDLKGNYVI---SS 810 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 D GI + + + + + K+ EE R+LYV +TRA +LI+ ++ Sbjct: 811 DSIGITLREEHYRIDSLVKAMGNVTKKRQLLEEEARILYVALTRAKQKLILVGDVPNLDK 870 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLT---NSINKDEWIAYEWST-------------- 716 + T + + D+ L+ ++ D +A + S Sbjct: 871 RVKEWSTELNQIGQLSLADKLSSTSPLSFMGPALALDRHLAVKMSDITNSLDKSQSFLYI 930 Query: 717 ----HHPENTPLEREETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + E ++ ET L K + P K+ S I Sbjct: 931 NYENANGELPDYQKAETSNDKTQSNLLNQTTKRLYQFNYPFKDASETTAYQAVSEIKKAF 990 Query: 767 KTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF---TLPE 798 +E+ L + G H +LQ E Sbjct: 991 NDPIETELENAHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHMILQYYDYQGNGAE 1050 Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS--- 852 + + I + K + +L + + E+ S Sbjct: 1051 DQLEVEIQELIKQ--KKLNPEIVSSLKKDQIEWFVHSNFAEEFWQKPENLKREIDFSSLI 1108 Query: 853 ------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTHIA 902 + P I++ G ID + I +F+YKT H + IE I + Sbjct: 1109 SAKTLFKNFSDPNAKILVHGTIDGYFVKNDGIILFDYKTDHVDQSHLSESIELIKEKYTG 1168 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL +YE+ + + K + LI + + + Sbjct: 1169 QLRLYEQAINEFSQKKVIGKYLILLDAKQAVEV 1201 >gi|295693034|ref|YP_003601644.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus crispatus ST1] gi|295031140|emb|CBL50619.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus crispatus ST1] Length = 1202 Score = 362 bits (929), Expect = 2e-97, Method: Composition-based stats. Identities = 169/995 (16%), Positives = 320/995 (32%), Gaps = 125/995 (12%) Query: 33 KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92 K ++ + E + +++ LL S T + + + +++ Sbjct: 240 KELAKAKEAFTLFAQNLDHFVFALENDADYDKQRELLRSCVFTANY-RKSSKWDEDVLNF 298 Query: 93 SPDLKEKLKKSQDEFIK------IRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKK 142 DL++ ++++ D K+ K + L + + K+ Sbjct: 299 YEDLQKLKDEAKNLVFDTFTSFFAVDEQEQIKVMKRGQKIVAAIAKSELALIDRFNKLKR 358 Query: 143 KNCVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +LD+ D+ +L + S R + ILIDE QD + +Q +I+ + Sbjct: 359 SENLLDYSDMEQLAYQILSQDTSNSQMAREFYQNKFKEILIDEYQDINALQENIIQQI-- 416 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + TLF VGD KQSIY F AEP L++ A + ++ I L Sbjct: 417 -------KNKDKNTLFMVGDVKQSIYGFRQAEPSLFLKKYHDF---ANDDNKQTKRILLS 466 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 +FRST + +V++VF ++ D G + + ++ + Sbjct: 467 DNFRSTEPVTKIVNQVFKSVLSSDFGGIDYQKE-----------GQLIFGAKYYPENTPK 515 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVL 379 + + + + + I + + K R ++ DI +L Sbjct: 516 ASEVIVHEKKNSSNEDENEIDFSEIQMVLARIKQLKEERVQIFDSKTGMRELRYSDIAIL 575 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 R R D I + D + +M + I + + D+ V Sbjct: 576 TRSRSD----NLEIMQEFAKQDIPLFVTDAKNYFQTFELTVMMNYLKIIDNPDQDIPLVS 631 Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQF 497 +L+SPLFNF E D+ KI + + + ++ + + + +L A Sbjct: 632 VLRSPLFNFGEKDLAKIRIKSKNSTFYSALTSYVGVGDELSTRIKDFLNQLADLRKFATA 691 Query: 498 CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-- 554 + I + + G + L+ E + L + I+ + Sbjct: 692 HRISELIWSIYARTNLLEIMTALPNGEQRRVNLEALYERAASYESAGFKGLYQFINFINR 751 Query: 555 ---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 Q N VR+MT+H +KGLE P+VF V + I Sbjct: 752 MRQSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHKYQMRDLKGNYVI--- 808 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 +D GI + + + + + K+ EE R+LYV +TRA +LI+ Sbjct: 809 SSDSIGITLREEHYRIDSLVKAMGNVTKKRQLLEEEARILYVALTRAKQKLILVGDVPNL 868 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLT---NSINKDEWIAYEWST------------ 716 +++ T + + D+ L+ ++ D +A + S Sbjct: 869 DKRVKEWSTELNQIGQLSLADKLSSTSPLSFMGPALALDRHLAVKMSDITNSLDKSQSFL 928 Query: 717 ------HHPENTPLEREETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + E ++ ET L K + P K+ S I Sbjct: 929 YINYENANGELPDYQKAETSNDKTQSNLLNQTTKRLYQFNYPFKDASETTAYQAVSEIKK 988 Query: 765 KGKTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF---TL 796 +E+ L + G H +LQ Sbjct: 989 AFNDPIETELENAHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHMILQYYDYHGNG 1048 Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS- 852 E + + I + K + +L + + E+ S Sbjct: 1049 AEDQLEVEIQELIKQ--KKLNPEIVSSLKKDQIEWFVHSNFAEEFWQKPENLKREIDFSS 1106 Query: 853 --------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTH 900 + P I++ G ID + I +F+YKT H + IE I + Sbjct: 1107 LISAKTLFKNFSDPNAKILVHGTIDGYFVKNDGIILFDYKTDHVDQSHLSESIELIKEKY 1166 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL +YE+ + + K + LI + + + Sbjct: 1167 TGQLRLYEQAINEFSQKKVIGKYLILLDAKQAVEV 1201 >gi|315613168|ref|ZP_07888078.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC 49296] gi|315314730|gb|EFU62772.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC 49296] Length = 1217 Score = 362 bits (929), Expect = 2e-97, Method: Composition-based stats. Identities = 158/1030 (15%), Positives = 345/1030 (33%), Gaps = 140/1030 (13%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQC 61 F + ++ E I + LW L F ++ + + + +Q Sbjct: 229 ADFAIEKDKLTEQIKQALWDLESFFRYHLDNDAKEFPKAAYLEAVQQVLDEISSLNQESD 288 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTY 117 + ++L+ K + + L + + + ++ D+ Sbjct: 289 SQAYQAVLARVVAISKEKNGRALANSSRKADLKPLADAYNDERKAQFAKLGQLADQITIL 348 Query: 118 KMFKS-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + LAK Y + K++ +F D+ T ++L+ + Sbjct: 349 DYQERYHEDTWDLAKIFQTFMSDFVEAYRKRKRQENAFEFADISHYTIEILENFP---QV 405 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY F Sbjct: 406 REAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRF 454 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 A+P+ + + + Q+ +I L +FRS++++L+ + F+ + + Sbjct: 455 RQADPQIFNEKFQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDAFARLMDQEVGEI 510 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + + + + + + ++E + + R + Sbjct: 511 NYDSMHQLVFANTKLTPNPDNKAEFLLYDKDDSGQEEEESQTETKLTGEM-------RLV 563 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + + + K+I +L R ++Y I V + Sbjct: 564 IKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGE 610 Query: 410 FILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 L ++ ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + Sbjct: 611 QNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKVEDKVQEN 670 Query: 469 YIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +K N K + + A+ S +D I + Sbjct: 671 LYEKLVNAQKLATSQKNLIHTALAEKLSQFMDILDSWRLYAKTHSLYDLIWKIYNDRFYY 730 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANH 569 + G L + E++++ L I ++Q A + Sbjct: 731 DYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPK 790 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PG 617 + V +MT+H +KGLE P VF+++ + ++ + Sbjct: 791 DAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKVDTEAVEA 850 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------- 670 + + + K L+ ++ E RLLYV MTRA +L + + Sbjct: 851 HYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKE 910 Query: 671 ---------SNEKKSNQRTWYDMVY-----DSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + + R + D ++ + N + + + + ++ E + Sbjct: 911 YPAVNNGKLDSNTRLQARNFQDWIWAISKVFAKDNLNFIYRFVGEDQLTREAIGELENRS 970 Query: 717 HHPENTP--LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------ 768 +++ + ETIK+ ++ K + + + I P + PS I + Sbjct: 971 PLQDSSQSSNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEG 1030 Query: 769 ------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810 S G H+L+Q I +R + T Sbjct: 1031 VEITNQTKSPEKKISFDLPDFSTKEKVTGAEIGSATHELMQRID---LSQRPTLASLTET 1087 Query: 811 KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIIS 865 + L I + P+ ++ Y E S K ++D ++ Sbjct: 1088 LKQVQTSPGVRDKINLSKILAFFDTPLGQEILANTDHLYREQPFSMLKKDQKSQEDFVVR 1147 Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 G +D + + I +F+YKT + + + + QL++Y + L +Y +++ LI Sbjct: 1148 GILDGYLLYEDRIILFDYKTDRY--DQPIQLIDRYRGQLALYGEALSRAYSIENIEKYLI 1205 Query: 926 YVSEPKVFII 935 + + +V ++ Sbjct: 1206 LLGKDEVQVV 1215 >gi|293365449|ref|ZP_06612158.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037] gi|291315817|gb|EFE56261.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037] Length = 1217 Score = 362 bits (929), Expect = 2e-97, Method: Composition-based stats. Identities = 159/1031 (15%), Positives = 333/1031 (32%), Gaps = 140/1031 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQ 60 K F ++ E I + LW + F ++ + + + +Q Sbjct: 228 KADFANEKDKQTEQIKQALWDMESFFRYHLDNDAKEFPKAAYLEAVQQVLDEISSLNQES 287 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116 + ++LS K + + L + + + ++ D+ Sbjct: 288 DSQAYQAVLSRVVAISKEKNGRALANSSRKADLKPLADAYNDERKTQFAKLGQLLDQITI 347 Query: 117 YKMFKS-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + LAK Y E K++ +F D+ T ++L+ Sbjct: 348 LDYQGRYHKDTWDLAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILENFP---Q 404 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 +R + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY Sbjct: 405 VREAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYR 453 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F A+P+ + + + ++ +I L +FRS++++L+ + VF + + Sbjct: 454 FRQADPQIFNEKFQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFGRLMDQEVGE 509 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 + + + + + + ++E + + R Sbjct: 510 INYDSMHQLVFANTKLAPNPDNKAEFLLYDKDDSGQEEEESQTESKLTGEM-------RL 562 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + K+I +L R ++Y I V + Sbjct: 563 VIKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDG 609 Query: 409 RFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 L ++ ++ R I + D + V ++KSP+F+F ED++ ++ Q+ E + Sbjct: 610 EQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKIEDKAQE 669 Query: 468 EYIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 +K N K + + A+ S +D I + Sbjct: 670 NLYEKLVNAQKLATSQKNLIYTALAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFY 729 Query: 514 RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSAN 568 + G L + E++++ L I ++Q A + Sbjct: 730 YDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEVQHDLASVAVAPP 789 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------P 616 + V ++T+H +KGLE P VF+++ + + + Sbjct: 790 KDAVELLTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVE 849 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-- 674 + + + K L+ ++ E RLLYV MTRA +L + + + Sbjct: 850 AHYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAK 909 Query: 675 -----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 N + W + F D + + Sbjct: 910 EYPAANNGKLDSNTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTREAIGQLENK 969 Query: 718 HP----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----- 768 P + ETIK+ ++ K + + + I P + PS I + Sbjct: 970 SPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDME 1029 Query: 769 -------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809 S G H+L+Q I + + + + Sbjct: 1030 GVEITNQTQSSEKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETL- 1088 Query: 810 TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC--DSYSEVSVSG--KINCPKKDIII 864 + L I + + ++ Y E S K K+D ++ Sbjct: 1089 --KQVQTSPAVRDKINLSKILAFFDTALGQEILANTSHLYREQPFSMLKKDQKSKEDFVV 1146 Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 G +D + + I +F+YKT + E + + QL++Y + L +Y +++ L Sbjct: 1147 RGILDGYLLYEDRIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYL 1204 Query: 925 IYVSEPKVFII 935 I + + +V ++ Sbjct: 1205 ILLGKDEVQVV 1215 >gi|293572573|ref|ZP_06683547.1| recombination helicase AddA [Enterococcus faecium E980] gi|291607356|gb|EFF36704.1| recombination helicase AddA [Enterococcus faecium E980] Length = 1240 Score = 362 bits (929), Expect = 2e-97, Method: Composition-based stats. Identities = 163/1001 (16%), Positives = 327/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 + + + +A +EE ++ L + + +K + + + K+ L Sbjct: 259 AGEQLQIKNIYEAFSQDRLEEAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQIEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ AW+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ KDI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658 Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + V+ Y + +K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVFAYQASNEDELAAKLEHFGKQLDHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704 + + + + + ++K Sbjct: 899 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQDSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QTIIEQRQLLAEKELVNLDEQMKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + N K + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S ++ + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238 >gi|242373134|ref|ZP_04818708.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis M23864:W1] gi|242349085|gb|EES40686.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis M23864:W1] Length = 1218 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 147/955 (15%), Positives = 306/955 (32%), Gaps = 128/955 (13%) Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134 T + + ++ +L ++K + + + K+ + K + Sbjct: 291 TNEGMEEALNDAKKHYDHYKELVTEVKNNYFSRSAEDLKLDMQKLAPRVAYLAQIVKDVI 350 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQW 193 + + K+ +LDF D +L D + I + IL+DE QDT+ +Q Sbjct: 351 EAFSKQKRSRNLLDFADYEHFALQILTNEDGTPSHIAETYREHFKEILVDEYQDTNRVQE 410 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 +++ + K LF VGD KQSIY F A+P + + ++G Sbjct: 411 KILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFTCDGQDSG- 462 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L +FRS ++L+ + +F EN ++ D + + + VQL Sbjct: 463 --MVIDLSQNFRSRQEVLSTTNYLFKHMMDENVGEITYDDAAQLYYGAPYDQAENPVQLR 520 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKR 369 + + +S + + A I + ++I ++ G R Sbjct: 521 ALIEADKES----------------SDLTGSEQEADYIVEQVKDIIENRQVYDMKYGTYR 564 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 KDI++L R + + + I + + ++ +++ R + Sbjct: 565 NATYKDIVILERNTDNARN----LQQAFKNSDIPFHVKSKKGYFEQTEVRLVLSFLRTVD 620 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQH 483 + D+ V +++S ++ F+ED++ +I Y+ I+ + N K + Sbjct: 621 NPLQDIYLVGLMRSVIYQFTEDELAEIRVISPNDIYFYQSIEHYINDDNANAQLVDKLKR 680 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQN 542 IK I + +Q + Q F G + L +N + E + Sbjct: 681 FIKDIKKYQIYSQSEPVYQLIDKFYNDHFVIQYFSGLLGGKGRRANLYGLINKAIEFENS 740 Query: 543 SYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 S+ L + I +++ + N N VR+MT+H++KGLE P V + Sbjct: 741 SFRGLFQFIRFIDELIDRGRDFGEENIVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKY 800 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 K + + + + K E RL+YV +TR Sbjct: 801 NESDLTKPVILNQQYGLGMDYFDTEKEMIYPSLSSVAYRAINSKEHISEEMRLIYVALTR 860 Query: 658 ASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHNDERVK 696 A +QLI+ E K++ + Y ++ Sbjct: 861 AKEQLILIGRVKKEKELTDLEQLAISGNHIAVNERLTAKNSFKLIYSILAKHQSASLPHD 920 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM------------------DEQK 738 + + + + S + EE + + Sbjct: 921 QKFEQDIETLNSEMKPRVSIVVDHYEDVSTEEVTPENERRTVSDIDDINSGNDDVKAKIH 980 Query: 739 IPKKLFSPIKNDINEPYILNPSTID-----------------------TKGKTNLESLLS 775 P + D +P + S + T + S Sbjct: 981 QQLTYQYPYQEDTLKPSKQSVSELKRQLETEESDTNYDRVRQYRIGVATYERPRFLSQNK 1040 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL---LLSITRLL 832 + G ++H ++Q + + + Y + + +E + + Sbjct: 1041 KRKANEIGTLMHTVMQHLPFKEGRMTREELDQYVDELIERNIIEEDAKADIKFDEMMSFI 1100 Query: 833 ENPMMTTAMSCD-SYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYK 884 E+ + D Y+E+ ++ ++D+ II G ID I + +YK Sbjct: 1101 ESDLYMQIAQADKVYTELPFVVNQAKVDQLPESEEDVSIIQGMIDLIFQKDGAYYFVDYK 1160 Query: 885 THH-------HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 T + + + + Q+ Y L+ + L + + Sbjct: 1161 TDAFNRRKGMTDDEIGQQLKEKYQIQMKYYRNTLETILKQ-PVQGYLYFFKFGML 1214 >gi|27467582|ref|NP_764219.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC 12228] gi|81842983|sp|Q8CPT9|ADDA_STAES RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|27315126|gb|AAO04261.1|AE016746_51 ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC 12228] Length = 1224 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 152/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 313 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 372 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 373 DYEHFALCILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 425 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + +G I+L +FRS + Sbjct: 426 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 482 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL V + ++ Sbjct: 483 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 535 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 536 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 586 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 587 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 642 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ +I + Y+ I+ + K I+ I + + +Q Sbjct: 643 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 702 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 703 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 762 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 763 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 822 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672 + +K E RL+YV +TRA +QLI+ Sbjct: 823 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 882 Query: 673 ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698 + +S K Sbjct: 883 LIKYEQLAVSDTHIAVNERLTATNPFVLIYGVLAKHQSPSLPNDQRFERDIDQLNSEVKP 942 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756 +++ I+ E ++ E + E +E + I ++ KI ++L +N Sbjct: 943 RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 1002 Query: 757 LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791 S + K + E + G ++H ++Q Sbjct: 1003 SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1062 Query: 792 VIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847 + + K+ + Y + + +L +++ + I ++ P+ + + Y+ Sbjct: 1063 HLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1122 Query: 848 EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894 E+ + +D+ II G ID I S + +YKT + E Sbjct: 1123 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1182 Query: 895 -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + + Q++ Y L+ + + L + + I Sbjct: 1183 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1224 >gi|307703405|ref|ZP_07640347.1| recombination helicase AddA [Streptococcus oralis ATCC 35037] gi|307622812|gb|EFO01807.1| recombination helicase AddA [Streptococcus oralis ATCC 35037] Length = 1092 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 159/1031 (15%), Positives = 333/1031 (32%), Gaps = 140/1031 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQ 60 K F ++ E I + LW + F ++ + + + +Q Sbjct: 103 KADFANEKDKQTEQIKQALWDMESFFRYHLDNDAKEFPKAAYLEAVQQVLDEISSLNQES 162 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116 + ++LS K + + L + + + ++ D+ Sbjct: 163 DSQAYQAVLSRVVAISKEKNGRALANSSRKADLKPLADAYNDERKTQFAKLGQLLDQITI 222 Query: 117 YKMFKS-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + LAK Y E K++ +F D+ T ++L+ Sbjct: 223 LDYQGRYHKDTWDLAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILENFP---Q 279 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 +R + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY Sbjct: 280 VREAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYR 328 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F A+P+ + + + ++ +I L +FRS++++L+ + VF + + Sbjct: 329 FRQADPQIFNEKFQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFGRLMDQEVGE 384 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 + + + + + + ++E + + R Sbjct: 385 INYDSMHQLVFANTKLAPNPDNKAEFLLYDKDDSGQEEEESQTESKLTGEM-------RL 437 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + K+I +L R ++Y I V + Sbjct: 438 VIKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDG 484 Query: 409 RFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 L ++ ++ R I + D + V ++KSP+F+F ED++ ++ Q+ E + Sbjct: 485 EQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKIEDKAQE 544 Query: 468 EYIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 +K N K + + A+ S +D I + Sbjct: 545 NLYEKLVNAQKLATSQKNLIYTALAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFY 604 Query: 514 RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSAN 568 + G L + E++++ L I ++Q A + Sbjct: 605 YDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEVQHDLASVAVAPP 664 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------P 616 + V ++T+H +KGLE P VF+++ + + + Sbjct: 665 KDAVELLTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVE 724 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-- 674 + + + K L+ ++ E RLLYV MTRA +L + + + Sbjct: 725 AHYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAK 784 Query: 675 -----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 N + W + F D + + Sbjct: 785 EYPAANNGKLDSNTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTREAIGQLENK 844 Query: 718 HP----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----- 768 P + ETIK+ ++ K + + + I P + PS I + Sbjct: 845 SPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDME 904 Query: 769 -------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809 S G H+L+Q I + + + + Sbjct: 905 GVEITNQTQSSEKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETL- 963 Query: 810 TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC--DSYSEVSVSG--KINCPKKDIII 864 + L I + + ++ Y E S K K+D ++ Sbjct: 964 --KQVQTSPAVRDKINLSKILAFFDTALGQEILANTSHLYREQPFSMLKKDQKSKEDFVV 1021 Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 G +D + + I +F+YKT + E + + QL++Y + L +Y +++ L Sbjct: 1022 RGILDGYLLYEDRIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYL 1079 Query: 925 IYVSEPKVFII 935 I + + +V ++ Sbjct: 1080 ILLGKDEVQVV 1090 >gi|293378777|ref|ZP_06624934.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1] gi|292642570|gb|EFF60723.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1] Length = 1240 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 160/1001 (15%), Positives = 325/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +E+ ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEDAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQMEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ AW+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ +DI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKDRPIEYRDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658 Query: 451 DDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + A+ K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVLAYQASNEDELAVKLEHFGKQLDHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704 + + + + + ++K Sbjct: 899 DHEELVFDPELRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQYSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QSIIEQRQLLAEKELVNLDQQVKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + N K + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S ++ + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238 >gi|82750584|ref|YP_416325.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122] gi|123548876|sp|Q2YWW4|ADDA_STAAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|82656115|emb|CAI80524.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122] Length = 1217 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 148/939 (15%), Positives = 295/939 (31%), Gaps = 128/939 (13%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 KK L +K+K + + ++ + K + + + K+ +LDF Sbjct: 308 KKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFS 367 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I Q IL+DE QDT+ +Q +++ + K Sbjct: 368 DYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI-------KTG 420 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + + G ++L +FRS + Sbjct: 421 DEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRMDLSQNFRSRKE 477 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E ++ D + + + + V L + + + Sbjct: 478 VLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYDESDHPVNLKVLIEADQEH------- 530 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKD 385 + + A I + +++ ++ R KDI++L R Sbjct: 531 ---------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTRSYRSATYKDIVILERSFGQ 581 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N R + ++ ++ R I + D+ V +++S + Sbjct: 582 ARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLALSFLRAIDNPLQDIYLVGLMRSVI 637 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F ED++ +I + Y+ I + N K + + I ++ Sbjct: 638 YQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHP 697 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G L N + E +S+ L + I +++ Sbjct: 698 VYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELI 757 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 758 ERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFG 817 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + +K E RL+YV +TRA +QL + Sbjct: 818 LGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKS 877 Query: 674 ---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKLTNSINKDEWI 710 + Y ++ + +K K + Sbjct: 878 LLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQVEDSSRP 937 Query: 711 AYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLFSPIKNDINEP 754 S + E+ E + + + + K P ND +P Sbjct: 938 NVNISIIYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKP 997 Query: 755 YILNPSTI-----------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 + S + T + S + G ++H ++Q Sbjct: 998 SKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQ 1057 Query: 792 VIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMTTAM-SCDSYS 847 + E + + Y + + A K++ I + + + + + Y Sbjct: 1058 HLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYR 1117 Query: 848 EVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEH-- 895 E+ ++ +D+ II G ID I + + +YKT E Sbjct: 1118 ELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIG 1177 Query: 896 --IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + + Q+ Y+ L+ NK + L + + Sbjct: 1178 TQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215 >gi|227551328|ref|ZP_03981377.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium TX1330] gi|257896051|ref|ZP_05675704.1| UvrD/REP helicase [Enterococcus faecium Com12] gi|227179539|gb|EEI60511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium TX1330] gi|257832616|gb|EEV59037.1| UvrD/REP helicase [Enterococcus faecium Com12] Length = 1240 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 160/1001 (15%), Positives = 325/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +E+ ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEDAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQMEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ AW+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ +DI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKDRPIEYRDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658 Query: 451 DDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + A+ K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVLAYQASNEDELAVKLEHFGKQLDHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704 + + + + + ++K Sbjct: 899 DHEELVFDPELRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQYSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QSIIEQRQLLAEKELVNLDQQVKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + N K + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S ++ + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238 >gi|259046745|ref|ZP_05737146.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens ATCC 49175] gi|259036641|gb|EEW37896.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens ATCC 49175] Length = 1231 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 161/1028 (15%), Positives = 314/1028 (30%), Gaps = 133/1028 (12%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78 L + V+ ++ + G P + + + + + T + Sbjct: 222 ALIEELSYLVTQYDQLLKEIELLGAPKHQAVLEDDLDFVKAVLVHIQEESYVFAYQTFED 281 Query: 79 TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT--------------YKMFKSTL 124 KN T ++++ + +++K +++ K + K+ + Sbjct: 282 RKFKNWSTAKVDETVKESLDEIKAIREDLKKDFQKIKEDYFVISPEVQLQQMTKVNRILS 341 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDVSAWIRYKIDQEINHILI 182 +A +++ K + LDF DL +T +L ++ +++ Sbjct: 342 KLSDIAVMFYDRFQDEKHQLNKLDFSDLEHDTLRILTKLDQNGLKIASEYYQNHFKEVMV 401 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q V+ + + P F VGD KQSIY F A+P + Sbjct: 402 DEYQDVNRVQEAVLELV-----------NKPDNRFMVGDVKQSIYGFRLADPSLFREKYE 450 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 G+ I L +FRS ++L+ +KVF N + + ++ + Sbjct: 451 AY-----AEGKCGERIVLAENFRSRDEVLSFTNKVFQQIMNKELGQVEYDDVAALKTGNL 505 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 +++ D + + E+ +A+RI I Sbjct: 506 SYSQDDDKSSEIILIEDVDLDESTDDLEDAEGFEKVENEIHYVAQRIQEMIHTPFEVMND 565 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 ++ K R + D +L + + I + Y I V I ++ Sbjct: 566 KADAK-RSVNYGDFAILSSTKSNNDKIESIFAA----YGIPVNVQKAQSYFKRTEITTMV 620 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN------- 475 +L + I + D+ V +L+S L E + I T T Q ++ Sbjct: 621 SLLKVIDNPLQDIPLVAVLRSGLVGLDEIALAHIRTSSKNTSYYEAVCQFISDFKLKDVD 680 Query: 476 --------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526 + + + +++ A S I + G + Sbjct: 681 YYDSKQQLAIKERLESFLTLLNKWRDSANNESIAQLIWEIYMDTHYLEYVHGQSNGTQRA 740 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKG 582 L + E +S+ ++ I +E K A + N V++MT+H +KG Sbjct: 741 VNLHALYEHAHQYESSSFKGVRNFIRFIEALQKKEKDLDEAPIATDSNAVQVMTIHASKG 800 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL+DT + + + + KK Sbjct: 801 LEFPVVFLIDTNRKFNMQDLKASIMCSDEIGVGTNYFDLSTRITYPTVQAVATRNFEKKK 860 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---------------------W 681 E R LYV MTRA ++LII K Sbjct: 861 LLSEEMRKLYVAMTRAREKLIIVGTIKNYESFKKKYAFLMNESSEILPYQARFKSSTFLN 920 Query: 682 YDMVYDSFHNDERVKKIKLTNSIN----------------KDEWIAYEWSTHHPENTPLE 725 + ++ + +I I +++W Y + P + Sbjct: 921 WMLLSAIREQYKITPEIVAKADIVSNSKHYIHEISDKEVFQEDWHEYYNEANSPGELKVR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYIL-------------------NPSTIDTKG 766 + +K + + + + + ++E + + Sbjct: 981 VQSMLKTIQQDYQFYVESKTTSYQSVSELKRVLEDPIIEELSQNSLIEEGRRAIYLSPSL 1040 Query: 767 KTNLESLLSDNQ--TFNRGLIIHKLLQVIFTLPE---HKRKNFITSYCTKNAKLWPAKEY 821 + S RG +H L+Q + + + S N + P Sbjct: 1041 EQPRFMETSSTTVSGAQRGSALHLLMQKVDFTSTITLDSLEQLLESLVESNE-ITPEVAA 1099 Query: 822 KNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINC--------PKKDIIISGRIDQI 871 K + ++ + E + S + ++I G ID Sbjct: 1100 KVPVTQAFEFFQSTFGQWIVQNSHALVREQAFSYVLEASKFFKSIQTDDLMMIHGIIDGY 1159 Query: 872 SISQQNIFIFEYKTHHHVP--QEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVS 928 I +F+YKT + V + I+ I + QL+IY L NK + +L +S Sbjct: 1160 VELDDEIIVFDYKTDYVVDSIEGIQSIVRKYKDQLNIYADALS-ISCNKKVTKKVLCLLS 1218 Query: 929 EPKVFIIP 936 K I Sbjct: 1219 INKNIDID 1226 >gi|331082717|ref|ZP_08331840.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA] gi|330400336|gb|EGG79978.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA] Length = 1224 Score = 361 bits (927), Expect = 3e-97, Method: Composition-based stats. Identities = 165/1045 (15%), Positives = 343/1045 (32%), Gaps = 148/1045 (14%) Query: 2 KNRFGLSLNESYE------LIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-----LKKA 50 + + + E E LI ++ + + + +S E P + Sbjct: 196 RKAYEVESIEELENAEWMKLIKNEVKQEIKEASMLLKQSLEVSKEPDGPAFYIGLLEDEV 255 Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 L+++ QT+C E +L + +K + K +++++ + Sbjct: 256 SALEKSEQTECFFEWKEMLDKLEFKRLPAGKKAEKELVSESRQELAKNLRNEAKEQIKAL 315 Query: 111 RDRF----------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 ++R+ N + + + L Y+E KK+ +LDF DL ++L Sbjct: 316 KERYFQETAEEMLENLQRAGEPVGVLVDLTLAFMKLYKEKKKEKNILDFGDLEHYALEIL 375 Query: 161 ----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 K++D ++ ++ I+IDE QD++L+Q +++ + Sbjct: 376 IHHTKEKDERTDAARELSKKFEEIMIDEYQDSNLVQEKLL-------TSVSRIEDGIYNI 428 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 F VGD KQSIY F A P + AG I+L +FRS A++L V+ Sbjct: 429 FMVGDVKQSIYRFRLARPDL---FMEKFKTYPQEAGGDCLRIDLHRNFRSRAEVLEGVNY 485 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 +F + T L+ + + + + + Sbjct: 486 LFYQIMGEDLGGVEYDRTAA-------------LYPGKIFPSKPEEEKEPATEVLLLEDD 532 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLTR 394 +E + AR +A+ I ++G + + R + D +L+R + Sbjct: 533 EEEITRESEARAVAWRIGELVGNYLVLDKKTEEYRPAKYSDFTILLRTMSGWA---ETFK 589 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + N I + + ++ + + + D+ L F+ ++ Sbjct: 590 KILNSCGIPASVTTKTGYFSAQEVMTVLDYLKILDNPMQDIPLAAALHGLPDGFTFQELA 649 Query: 455 KICT--QRHETETVYEY---IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 +I +E + YE + ++ K + +L + H+ Sbjct: 650 EIKVLGMENEKSSFYEALLLGENLSSPLGEKIRKFFAVYRKLRGKVPYTPMHELIWDFYD 709 Query: 510 AKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKR 563 A + G + L E SY L I +E Q Sbjct: 710 ATNFLVYQQAFVSGEQRKANLLMLAEKARDYESTSYRGLFNFIRYIENLKKYQVDFGEAN 769 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 S N + VRIM++H +KGLE P+VF+ G Q+ + M + P L Sbjct: 770 ILSENEDTVRIMSIHGSKGLEFPIVFVAGMGKQMNMQDTRENMVLHPELGIGSPYIDTQL 829 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--------- 674 + ++R + + + + + E R+LYV +TRA ++LI+ + + Sbjct: 830 RIRTRTILQKAVQREILLESLGEELRILYVALTRAKEKLILTGVISKLEDTLKSFEMLKK 889 Query: 675 ----------KSNQRTWYDMVYDSFHNDERVKK--------IKLTNSINKDEWIAYEWST 716 + +++ D V + + + N + E Sbjct: 890 HGEERMPYGLRVKGKSYLDWVLKALARHRSMTPFYKRYHLSVYPFNDMYDREPDFTVRQI 949 Query: 717 HHPENTPLEREETIKQLMDEQKIPKK-------------------LFSPIKNDINEPYIL 757 E E + ++++ + ++ P + + P L Sbjct: 950 SSLELVLDEAQLRTEEMLKKGELLLWDSKEVYDEKWRELFQDSFSYEYPYQAEGTIPAKL 1009 Query: 758 NPSTIDTKGKTNLE--------------------SLLSDNQTFNRGLIIHKLLQVIFTLP 797 S + K ++E ++ + RG + H++ + + Sbjct: 1010 TVSEVKRMQKEDMEESEILLEEKETEEIVPLFMQETKAELKGAARGTLYHRVWEKL-DYG 1068 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLL-----LSITRLLENPMMTTAMSCDSYSEVSVS 852 + K I + A+E K++ L M Y E Sbjct: 1069 KIDTKEQIEKQLE---HILTAEEKKSIWIPDFYCFAKSSLAGRMKEAYQRGQLYREQPFV 1125 Query: 853 GKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904 + +++I++ G ID + + + +YKT + + + +I Q+ Sbjct: 1126 IAMPANQIREEYKTEEEILVQGIIDAYFEEEDGLVLVDYKTDKVQKGQEKELVEKYIVQM 1185 Query: 905 SIYEKILKDSYPNKSLVCLLIYVSE 929 Y+K L+ +K + + IY S Sbjct: 1186 QYYKKALEMI-TDKEVKEIYIYSSG 1209 >gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1] gi|121305681|gb|EAX46620.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1] Length = 1246 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 146/1050 (13%), Positives = 311/1050 (29%), Gaps = 146/1050 (13%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEER 65 L+ + + + ++ GNP T+ L A E Sbjct: 211 EALLADRIALELERLQHKFARLAAEAVRPGNPAAYVKTLEDDRGQLDWAIAAARHSWREL 270 Query: 66 FSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF--- 120 + L+ + + + ++ +K K+K+ + + ++ M Sbjct: 271 GAALNGLKFGTLPAAKGVDAAVCKRFQERRNTIKSKVKEIAERYFGRPEQELIADMRAQL 330 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK------KRDVSAWIRYKID 174 + L ++EAKK ++DF DL +L + + + Sbjct: 331 PLVETLIDLVLAFGQRFQEAKKAKGLVDFSDLEHYCLQILLADNATPDNIQPSAVALALR 390 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++ +L+DE QDT+ +Q ++ ++ F VGD KQSIY F AEP Sbjct: 391 EKYEEVLVDEYQDTNAVQETILELVS---------RPDRPNRFMVGDVKQSIYRFRLAEP 441 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 L + A + I+L +FRS IL V+ +FS + Sbjct: 442 GLFLEKYNRYPAAAGGSE---RRIDLAQNFRSRPGILAAVNFLFSQLMTPRAAEMGYGAA 498 Query: 295 IRHRSSRIGQV-------GTVQLW-----------------EQVVSQHDSQCNPQQESWT 330 G V++ E Q D+ + + + Sbjct: 499 EALNPGPDYPPCDQLTLAGPVEVHLINQAEAVAAAPAADVVEDEAEQQDADAGGDEPANS 558 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTP 387 S + + ++ A IA + + + + R + +DI++L+R + Sbjct: 559 SELVTAQELTAFEREAWLIARRLLALKEAGHVVYDKHDKAYRPLAWRDIVILLRTVQGKA 618 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 + + I + + ++ +++L I + D+ +L+SPL Sbjct: 619 GV---LLDVLRQAGIPAYADVDGGYFEETEVQVMLSLLAVIDNPRQDIHLAGVLRSPLVG 675 Query: 448 FSEDDIFKICTQRHETETVY---EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 + D+ I + A K ++ + +A+ + Sbjct: 676 LTAGDLAAIRLCKDGDLWTALTAAAGADIAEPLRQKIGVFLERLDRWRSLARRRGVAELI 735 Query: 505 TLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YP 558 I G L + + E ++ L + LE+ Sbjct: 736 WSIYRETGYYDYIGGMPGGALRQANLRVLYDRARQFEATNFRGLFRFLRFLERLRDRGSD 795 Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + RA + VR+M++H +KGLE PVV L D G Q+ + + L P + Sbjct: 796 MAVARALGEGEDVVRVMSIHKSKGLEFPVVVLADLGKQLNLRDTQELVLCHKELGLGPKV 855 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + + L + E R+LYV +TRA ++LI+ ++ S+ Sbjct: 856 IRPDLRDSYPTLARWGIEHKLTLEAKAEELRILYVALTRAREKLILVGSVKKLADRCSDW 915 Query: 679 -------------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + + D + + ++ ++ Sbjct: 916 CAMVGWQAQALPDALITDAKNYLDWLGPAIVRHPGGAPLRALAGCDETPTAKLAALNAAW 975 Query: 720 ENTPLEREETIKQLMDEQKIPK-----------------------KLFSPIKNDINEPYI 756 + + + P + +P Sbjct: 976 QVITHAADSINPVAPAQPADNPLAVCLKELKPLPGGDSAWVAARLDWRYPYAAAVGQPAK 1035 Query: 757 LNPSTID-----------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTL 796 L S I + G +H ++Q + + Sbjct: 1036 LTVSEIKRRFALADQDGEQWYPPRLAARPRFIQTAGKLTAAEVGTAMHTVMQHLNLAGDM 1095 Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKI 855 + + L P + + +I +P+ + + E++ + Sbjct: 1096 SASGVRRELERLVAAEI-LLPEQAAAVDVEAIAAFFTSPLGQRLLNAAWRRRELAFCQVL 1154 Query: 856 NCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906 + + I G +D + + + +YKT + + QL + Sbjct: 1155 PAASIDPALAGTDETVFIQGVVDCLFAEADGLILIDYKTDQVKDGF--ELVERYDVQLKL 1212 Query: 907 YEKILKDSYPNKSLVCLLIYV-SEPKVFII 935 Y ++ + + +YV S ++ + Sbjct: 1213 YAAAMETILRQ-PVKEIYLYVFSTGQIVPV 1241 >gi|306825212|ref|ZP_07458554.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432648|gb|EFM35622.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1217 Score = 361 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 155/1030 (15%), Positives = 329/1030 (31%), Gaps = 140/1030 (13%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQC 61 F ++ E I + LW L F ++ + + + +Q Sbjct: 229 ADFANEKDKLTEQIKQALWNLESFFRYHLDNDAKEFPKAAYLEAVQQVLDEIGSLNQGSD 288 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTY 117 + +L+ K + + L + + + ++ D+ + Sbjct: 289 SQAYQEVLARVVAISKEKNGRALANSSRKADLKPLADAYNDERKAQFAKLGQLVDQIAIF 348 Query: 118 KMFKS--------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + T Y E K++ +F D+ T ++L+ + Sbjct: 349 DYQERYHGDTWELSKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILENFP---QV 405 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY F Sbjct: 406 RKAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRF 454 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 A+P+ + + + ++ +I L +FRS +++L+ + VF + + Sbjct: 455 RQADPQIFNEKFQRYAQ----NPKEGKLILLKENFRSNSEVLSATNDVFGRLMDQEVGEI 510 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + + + + + + + ++E + + R + Sbjct: 511 NYDSMHQLVFANNKLTPNPENKAEFLLYDKGDSGQEEEESQTETKLTGEM-------RLV 563 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + + + K+I +L R ++Y I V + Sbjct: 564 IKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGE 610 Query: 410 FILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 L ++ ++ R I + D + V ++KSP+F+F ED++ ++ Q+ E + Sbjct: 611 QNNYLQSLEVQVMLDTMRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKAEDKVQEN 670 Query: 469 YIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +K N K + + A+ S +D I + Sbjct: 671 LFEKLVNAHKQAASQKELIHTDLAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFYY 730 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANH 569 + G L + E++++ L I ++Q + Sbjct: 731 DYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVTVAPPK 790 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PG 617 + V +MT+H +KGLE P VF+++ + + + Sbjct: 791 DAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGTVEA 850 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--- 674 + + + K L+ ++ E RLLYV MTRA +L + + + Sbjct: 851 HYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAERKLYLVGKGSREKLEAKE 910 Query: 675 ----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW---- 714 N + W + F D + + Sbjct: 911 YPIAENGKLDSNTRLQAKNFQDWIWAISKVFARDNLNFSYRFVGEDQLTREAIGQLENKS 970 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------ 768 S T + ETIK+ ++ K + + + I P + PS I + Sbjct: 971 SLQDRSQTDNRQSETIKEALEMLKEVEVYNTLHREAIELPSVQTPSQIKKFYEPVMDMEG 1030 Query: 769 ------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810 S G H+L+Q I + + Sbjct: 1031 VQIANQTQSPEKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLSQQPTLATLEETL-- 1088 Query: 811 KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIIS 865 + L I + + ++ Y E S + ++D ++ Sbjct: 1089 -QQVQTSPAVRDKINLSKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVR 1147 Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 G +D + + I +F+YKT + E + + QL++Y + L +Y +++ LI Sbjct: 1148 GILDGYLLYEDRIILFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYLI 1205 Query: 926 YVSEPKVFII 935 + + +V ++ Sbjct: 1206 LLGKDEVQVV 1215 >gi|257898678|ref|ZP_05678331.1| UvrD/REP helicase [Enterococcus faecium Com15] gi|257836590|gb|EEV61664.1| UvrD/REP helicase [Enterococcus faecium Com15] Length = 1240 Score = 361 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 163/1001 (16%), Positives = 327/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +EE ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEEAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQIEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ AW+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ KDI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658 Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + V Y + +K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVLAYQASNEDELAAKLEHFGKQLDHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704 + + + + + ++K Sbjct: 899 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQDSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QTIIEQRQLLAEKELVNLDQQMKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + N K + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S ++ + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238 >gi|260101292|ref|ZP_05751529.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084877|gb|EEW68997.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 1204 Score = 361 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 173/995 (17%), Positives = 323/995 (32%), Gaps = 123/995 (12%) Query: 33 KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92 K ++ E+ +Q + +++ LL S T F K +++ + Sbjct: 240 KELAKVKESFTLFAQNLNNFVQAVKEDDDYDKQRELLRSCVFTINFRKSKKW-DEDLLEF 298 Query: 93 SPDLKEKLKKSQDEFIKI---------RDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKK 142 +++ +++ + +++ + + + +++ A+ L + + K+ Sbjct: 299 YNEIQSLKDEAKSQVFDTFTSFYAVTEKEQIKIMQESQKIVTAISTAEIKLIERFNQLKR 358 Query: 143 KNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +LD+ D+ +L + S R + ILIDE QD + +Q +I+ + Sbjct: 359 NENLLDYSDMEQLAYQILSQDTSSSQMARDFYQNKFKEILIDEYQDINALQERIIQQIKS 418 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + TLF VGD KQSIY F AEP L++ + I L Sbjct: 419 E---------KKNTLFMVGDVKQSIYGFRQAEPSLFLQKYHQFAEDENEHE---ERILLS 466 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 +FRST + V+ VF + D G + + + Q Sbjct: 467 DNFRSTEPVTQTVNAVFKSILSTDFGGIDYQKE-----------GQLIFGAKYYPKSLPQ 515 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILV 378 + + + + + I + + GK R ++ DI + Sbjct: 516 ASEVIVHEKKNNNEKSKNEIDFSEIQMVLARIKQLEDEHVQIFDSNTGKMRDMEYSDIAI 575 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R R D I + D + +M + I + + D+ V Sbjct: 576 LTRSRSD----NLEIMQEFAKQDIPLFVTDAENYFQTFELTVMMNYLKIIDNPDQDIPLV 631 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQ 496 +L+SPLFNF E ++ KI + + K ++ + + EL A Sbjct: 632 TVLRSPLFNFDEKELAKIRIKSKNSNFYSALTSYVGTNDVLSKKCKNFLNQLAELRSFAT 691 Query: 497 FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 + I + + G + L+ E + L + I+ ++ Sbjct: 692 THRISELIWSIYERTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFID 751 Query: 556 QY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + N VR+MT+H +KGLE P+VF V I Sbjct: 752 RMRRSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHHYQMRDLNGNYII-- 809 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 +D GI + + + + + K+ EE R+LYV +TRA +LI+ + Sbjct: 810 -NSDSMGITLREQNYRVDSLVKAMGNITKKQQLLEEEARILYVALTRAKQKLILVGDVPS 868 Query: 671 SNEKKSNQRT---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----------- 716 N+K T + + S+ D +A + + Sbjct: 869 FNKKVKEWSTELNHAGQLPLINKLSATSPLSFIGPSLRFDRHVAIKLNDITKSIDQSQKI 928 Query: 717 -------------HHPENTPLEREETIKQLMDEQKIPK--KLFSPIKNDINEPYILNPST 761 E+T + E T K + Q + K + P ++ S Sbjct: 929 LFIDYQDEDTKFIKKDEDTDNQNENTSKSALLTQTVNKLYQFNYPFRDASETTAYQAVSE 988 Query: 762 IDTKGKTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF-T 795 I +++ L ++ G H +LQ T Sbjct: 989 IKKAFNDPIDAELENSHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYT 1048 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVS- 852 + + + KL P I + + EV S Sbjct: 1049 NDSADNLDQEIATLIEQKKLNPDIVSSLNKDQIDWFVHGDFAKDFWKEPTNLKREVDFSS 1108 Query: 853 --------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTH 900 + P I++ G ID +++ I +F+YKT H + IE I + Sbjct: 1109 LLSARTLFKDFSDPDAKILVHGTIDGYFVAKNGIILFDYKTDHVNKTNIDKSIELIKEKY 1168 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL +YE+ L + K + LI + +V + Sbjct: 1169 TGQLRLYEQALNEFSEKKVIGKYLILLDAKQVVEV 1203 >gi|289167909|ref|YP_003446178.1| exonuclease RexA [Streptococcus mitis B6] gi|288907476|emb|CBJ22313.1| exonuclease RexA [Streptococcus mitis B6] Length = 1216 Score = 361 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 160/1019 (15%), Positives = 330/1019 (32%), Gaps = 141/1019 (13%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + +Q + ++L+ Sbjct: 240 EQIQQALWDLENFFRYHLDNDAKEFPKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 ELAKTFQAFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVREAYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + ++ + TS + E+ + R + I + Sbjct: 522 NTKL--------TPNPDNKAEFLLYDKDDTSEEEESQTETKLTGEMRLVIKEILKLYKEQ 573 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + K+I +L R ++Y I V + L ++ Sbjct: 574 ---------GVSFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLALQKAEDKIQENLYEKLVNAQKQ 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + A+ S +D I + S G Sbjct: 681 VSSHRNLIHTALAEKLNQFMNILDSWRLYAKTHSLYDLIWRIYNDRFYYDYVGSLPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I + Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIGMINQVLEVQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI---- 636 KGLE P VF+++ + ++ + + ++ + Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 637 --------KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTHRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAAKNGKLNS 920 Query: 675 -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D + + P Sbjct: 921 NTRLQAKNFQDWIWAISKVFAKDHLNFSYRFVGEDQLTREAIGQLENKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + ETIK+ ++ K + + + I P + PS I + Sbjct: 981 QSETIKETLEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVD 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q + +R + T Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRMD---LTQRPTLASLTETLQQVQTSPAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLSKILAFFNTALGQEILANTNHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYED 1157 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++Y + L SY +++ LI + + +V ++ Sbjct: 1158 KIILFDYKTDRY--DEPSQLIARYHGQLALYGEALSRSYSIENIEKYLILLGKDEVQVV 1214 >gi|323704721|ref|ZP_08116299.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536183|gb|EGB25956.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11] Length = 1073 Score = 361 bits (925), Expect = 5e-97, Method: Composition-based stats. Identities = 166/929 (17%), Positives = 318/929 (34%), Gaps = 103/929 (11%) Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNA 135 K P K + + L ++K++ I+ + + + K+ L + + + Sbjct: 166 KKYPSKIFTGKMFQSEVISLYFRMKEAGLSVEDIKLSYESDESTKAMENLALIILEKIEE 225 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 +Y+ K +LDF DL LL IR + +IL+DE QDT+ +Q E+ Sbjct: 226 NYKAFKSSKNLLDFNDLETIALKLLSND----IIRNDYFERYRYILVDEFQDTNRLQKEI 281 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 I LTE + LF VGD KQSIY F G + + R + Sbjct: 282 ILKLTEK-----DGKIPDGKLFIVGDIKQSIYGFRGTDFRIFDEFCRKIEAD-------G 329 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLS-----EDSTTTIRHRSSRIGQ--VGTV 308 ++ L +RST +I++ ++ VF D + + + Sbjct: 330 KVLNLSNCYRSTKNIISTINDVFKNLIEPYEELKYQSFADEGPKVELITYKKDDIVNEKN 389 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + ++++ N + + D S + IA I ++G Sbjct: 390 ERYKKIKQLLKDDDNKGKLNELLMEDGALANSRKDFQGKIIAGRILKLVGEG-------- 441 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + KDI VL+R R I D I D I D++++ + Sbjct: 442 --FEYKDIAVLLRSRSSLKSIEGAL----ADCGIPYCIIGGIGFWDKREIIDIISVYKLA 495 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYEYIQKFANCGISKF--QH 483 D+++ + L+SP+F FS+DD+F + + + CG K+ + Sbjct: 496 FDTSDEIALLTALRSPIFGFSDDDLFAFMNIYNGQCIDDPLEALKNFSPKCGDDKWVIKR 555 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQN 542 + ++ + +P++ F +IL + ++ IS G + +++ + E+ Sbjct: 556 ACNILDKISKMRGVYNPYEIFKMILKITEYKKLLISLPNGYQKFRNVEKLESIIKSFEEK 615 Query: 543 SYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTG--- 594 ++LI L+ + N V+IMT+H++KGLE V + D Sbjct: 616 RILDSKDLIEYLDALKESSSLDSEAFLDTEESNAVKIMTIHSSKGLEFDAVIIPDMDKAT 675 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + K M G+ KS N++ + + E RL YV Sbjct: 676 DGISVRKAPLFMLSEEGYIFCIGVNDDGDLDKSENSLYKEEYDRYLEKENMESRRLFYVA 735 Query: 655 MTRASDQLIICKHSN---TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 TRA L ++ S ++ + + + + Sbjct: 736 STRAKKFLAFIGQMKDNIDDIDEDSKLNSFMKQLLFAIKDGCSNIDYIDGTCLQSYAKNK 795 Query: 712 YEWSTHHPENTPLER--------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 ++ E+ + +K + L P+ L ++ Sbjct: 796 LDYVKELNEDADKIKFGGLIDKMPLNVKGNVSVTAYIDYLTCPMFYYYKYIVSLTDEYVE 855 Query: 764 TKGKTNL--ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK---LWPA 818 G ++ RG I+HK+L+ + N + + Sbjct: 856 LDGNSDDIYSESDDKISALERGTIVHKILETLDDDDYIDVSNLNDEIIKRYIDNYYMLRD 915 Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ--ISISQQ 876 K K + + + L+ E I +I ++G ID+ I + Sbjct: 916 KHRKKISGRLLKRLK--------------EYKFRAPI---DDNINLNGVIDRIDIYENDG 958 Query: 877 NI--FIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV--------CLLI 925 NI +IF+YKT+ ++E I + Q+ +Y +L+ K++ L Sbjct: 959 NIESYIFDYKTNKIDSDDDLEKIARHYTPQIHVYSHVLRRL---KTISGFSPTLKGAFLY 1015 Query: 926 YVSEPKVFIIPQNKL--NKAFAEISTKIP 952 ++ K + + L + +I P Sbjct: 1016 FLDVGKYVEVDISDLYIMETLEKILKATP 1044 >gi|116494973|ref|YP_806707.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus casei ATCC 334] gi|122263609|sp|Q038V7|ADDA_LACC3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116105123|gb|ABJ70265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus casei ATCC 334] Length = 1234 Score = 360 bits (924), Expect = 6e-97, Method: Composition-based stats. Identities = 162/1041 (15%), Positives = 314/1041 (30%), Gaps = 131/1041 (12%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQASQTQC 61 + + + +WP Q+ I ++ + N +A + + Sbjct: 205 APEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQLPNPIWYQQIQADLAPLQTLLET 264 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--------------F 107 + + S ++ +F I ++ ++ D K K +D Sbjct: 265 NAPTYDTVRSVLISHEFAAWSRI-SKGLDDADKDTKNAAKDLRDAAKKTWQNKLAPTFAL 323 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165 + + +A K V D+ D+ N +L+ Sbjct: 324 AAEQIGDLLREAQPLVATLANVALKFEDALTAEKAARHVQDYSDIAHNALRILQQKDPQT 383 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 A I + +++DE QD S +Q ++ +++ ++P F VGD KQS Sbjct: 384 GAPIADNYRASFDEVMVDEYQDISPLQEALLAAVST---------TTPGDRFMVGDVKQS 434 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284 IY F A+P+ + + + Q T+ I L +FRST ++L + +FS + Sbjct: 435 IYGFRLADPQLFIHKYQTFQDAPTDPAAP-ERIILAENFRSTKNVLAFTNLIFSQIMDPE 493 Query: 285 -QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 LS D+ +++ + G + + D A+ Sbjct: 494 VGDLSYDNAAALKYGALDYGDAHPAVKVLLYSKATSDEDSSDASELPGDADDNEPVDIAT 553 Query: 344 ILARRIAYTISNMIG----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 + + I +I + R I +DI +L R+ LI Sbjct: 554 GQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTSQNSLIQTQFAA---- 609 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 + + D + ++AL + I +Q+ D+ V +L+SP+ S D + I Sbjct: 610 AGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVLRSPIVGLSADQLALIRLA 669 Query: 460 RHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 + E A H + +A+ I Sbjct: 670 AKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRDLARENDLVTLLWAIYQDT 729 Query: 512 KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAH 565 G++ L ++ E + L I + + Sbjct: 730 GFLDYVGGTPGGSQRQANLQALIDRARTYEAGGFKGLFAFIHFITLMQKQDQDLAMPAQV 789 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 +++ V++MT+H +KGLE PVVFL+ F+ I+ + Sbjct: 790 DPDNDAVKLMTIHKSKGLEFPVVFLMQANKH-FNMSDQTGTAILTKQGIGIKWLDPETRV 848 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + + T E RLLYV +TRA +L + + + N+ S +T Sbjct: 849 EYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGNQLTSADKTVEKWA 908 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--------------------------- 718 + + + + + +WI H Sbjct: 909 AAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQARGLAETTIKPALVGDETEFTIEIDV 968 Query: 719 -PENTPLEREETIKQLM-DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE----- 771 P+ TP E + + S + K + Sbjct: 969 NPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQAATTTTGFQSVSEIKRAFDDPDTIDL 1028 Query: 772 -----------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--FIT 806 S G H LLQ++ + + Sbjct: 1029 VNADRFLGPKPPMRDLTAPAFLTETPSGISPAAIGTATHLLLQLVDLAKPITMASLRALR 1088 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCP------ 858 T + L ++ R E + ++ + EV S + Sbjct: 1089 DQLTTTQVIAVDVAKHIDLTALIRFFETDLGRLLLAKPQQVHREVPFSMLLPADQVFEAL 1148 Query: 859 ----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 +D++I G ID +Q + +F+YKT H+ + + QL++Y + L+D Sbjct: 1149 ADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHNP--NTAVLVDRYRGQLNLYAQALQDL 1206 Query: 915 YPNKSLVCLLIYVSEPKVFII 935 P L L+++ V + Sbjct: 1207 QPKPVLHRYLVFLRTGTVVDL 1227 >gi|224476068|ref|YP_002633674.1| putative ATP-dependent nuclease subunit A [Staphylococcus carnosus subsp. carnosus TM300] gi|251764540|sp|B9DIS2|ADDA_STACT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|222420675|emb|CAL27489.1| putative ATP-dependent nuclease, subunit A [Staphylococcus carnosus subsp. carnosus TM300] Length = 1220 Score = 360 bits (924), Expect = 6e-97, Method: Composition-based stats. Identities = 144/954 (15%), Positives = 295/954 (30%), Gaps = 132/954 (13%) Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 + + EK+++ + + K+ + + + Sbjct: 293 DGNLELLESAKAYYDDYKGAVEKVQQDYFSRSAEDLKADMAKLAPRVEVLSQITRDVIDT 352 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 + + K+ +LDF D +L D + + IL+DE QDT+ +Q ++ Sbjct: 353 FSKKKRSRNILDFSDYEHFALKILMNEDGTPTDLAKHYRNGFDEILVDEYQDTNRVQEQI 412 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 + + + LF VGD KQSIY F A+P + + G Sbjct: 413 LSCIKR-------GDETDGNLFMVGDVKQSIYKFRQADPSLFIEKYSRFSHD----GTTG 461 Query: 256 SIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I+L +FRS ++L+ + +F E+ + D + + + + + L Sbjct: 462 MRIDLSQNFRSRPEVLSTTNYLFKHMMDESVGEIIYDEAAQLYYGAPFDDKPHPLNLNVM 521 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVI 371 V D + + A IA + ++ ++ G R Sbjct: 522 VE------------------DKESELTGTEQEAEYIANQVEEIMNHREVYDMGTGSYRKP 563 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 KDI++L R + + + I N + + ++ +++ R + + Sbjct: 564 SYKDIVILERGYNRSR----ELQQAFKNRDIPFHVNSKEGYFEQTEVRLVLSFLRTVDNP 619 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ------KFANCGISKFQHVI 485 D+ V +++S ++ F+ED++ +I + Y+ IQ + ++K Q + Sbjct: 620 LQDIYLVGLMRSVIYQFTEDELARIRVTSPNDDYFYQSIQHYLKTKEADPDLVAKLQDFL 679 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSY 544 K + + + + Q F G + L N + E +S+ Sbjct: 680 KDLKFYQEFSLEHPVYQLIDRFYNNRLVIQYFSGMIGGKGRRANLYGLYNKAIEFENSSF 739 Query: 545 SSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L + I +++ K N + VR+MT+H +KGLE P V Sbjct: 740 RGLFQFIRFIDELIDRGKDFGEENVVGPNDDVVRMMTIHASKGLEFPFVIYSGLSKSFNR 799 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K + + + L +K E RL+YV +TRA Sbjct: 800 SDLYKPVILNQKYGMGMTYFDVEKDFAFPSLASVTLRAITEKEMISEEMRLMYVALTRAK 859 Query: 660 DQLIICKHSNTSNEK---------------------KSNQRTWYDMVYDSFHNDERVKKI 698 +QL + E K+ + Y ++ N Sbjct: 860 EQLFLVGRVKAEKELDKMLNTAISNNMLPMSYRLEVKNPLQLIYAILAKYQANHLTNDLK 919 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---------------- 742 N D+ I H E + + ++ + + + + Sbjct: 920 FERNIDELDDAIHPYAEIHIDEYSDIAQDIHQNEDEEFRTVNDIVNYQSTNTERQQAIET 979 Query: 743 ---LFSPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSD 776 P + D+ +P + S + T + Sbjct: 980 QLDYQYPYQKDVVKPTKQSVSELKRQLETEETGTSYERVRQYQLGASTYERPKFMRQHKK 1039 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLE 833 + G ++H ++Q + E + Y + ++ + ++ Sbjct: 1040 RKANEIGTLMHTVMQHLPFKEERMTSAELDEYIDGLIEKNIIEDDAKPDIRMDEVMNFIK 1099 Query: 834 NPMMTTA-MSCDSYSEVSVSG-------KINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 + + S E+ ++N + II G ID I + +YKT Sbjct: 1100 SDLYLEIAQSDQIMREMPFVVNQSKVDHQMNDDEDVSIIQGMIDLIYRKDNQYYFVDYKT 1159 Query: 886 H-----HHVPQEI--EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 V E E + + Q+ Y L+ K + L + + Sbjct: 1160 DTFNQRRGVSDEELGEQLKARYKIQMYYYRSALETIL-QKEVKGYLYFFKFGTL 1212 >gi|239631427|ref|ZP_04674458.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525892|gb|EEQ64893.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1234 Score = 360 bits (923), Expect = 8e-97, Method: Composition-based stats. Identities = 159/1007 (15%), Positives = 300/1007 (29%), Gaps = 117/1007 (11%) Query: 22 PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81 P+ Y Q+ + +ET PT L L Sbjct: 245 PIWYQQIQADLAPLQTLLETNAPTYDTVRSVLISHEFAA-WSRISKGLDGAD-KDTKNAA 302 Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K++ L + ++ + +A K Sbjct: 303 KDLRDAAKKTWQNKLAPTFALAAEQIGDLLRE-----AQPLVATLANVALKFEDALTAEK 357 Query: 142 KKNCVLDFEDLIINTNDLLK--KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 V D+ D+ N +L+ A I + +++DE QD S +Q ++ ++ Sbjct: 358 AARHVQDYSDIAHNALRILQQKDPQTGAPIADNYRASFDEVMVDEYQDISPLQEALLAAV 417 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 + ++P F VGD KQSIY F A+P+ + + + Q T+ I Sbjct: 418 ST---------TTPGDRFMVGDVKQSIYGFRLADPQLFIHKYQTFQDAPTDPAAP-ERII 467 Query: 260 LPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 L +FRST ++L + +FS + LS D+ +++ + G Sbjct: 468 LAENFRSTKNVLAFTNLIFSQIMDPEVGDLSYDNAAALKYGARDYGDAHPAVKVLLYSKA 527 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG----TDTIFSNGKKRVIQA 373 + + D A+ + + I +I + R I Sbjct: 528 TSDEDSSDASELPGDADDNEPVDIATGQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHY 587 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +DI +L R+ LI + + D + ++AL + I +Q+ Sbjct: 588 RDITLLTRQTSQNSLIQTQFAA----AGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQ 643 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETV--------YEYIQKFANCGISKFQHVI 485 D+ V +L+SP+ S D + I + E A H Sbjct: 644 DIPLVAVLRSPIVGLSADQLALIRLAAKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFF 703 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSY 544 + +A+ I G++ L ++ E + Sbjct: 704 NQLSHFRDLARENDLVTLLWAIYQDTGFLDYVGGTPGGSQRQANLQALIDRARTYEAGGF 763 Query: 545 SSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L I + + +++ V++MT+H +KGLE PVVFL+ F+ Sbjct: 764 KGLFAFIHFITLMQKQDQDLAMPAQVDPDNDAVKLMTIHKSKGLEFPVVFLMQANKH-FN 822 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + I+ + + + T E RLLYV +TRA Sbjct: 823 MRDQTGTAILTKQGIGIKWLDPETRVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQ 882 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH- 718 +L + + + N+ S +T + + + + + +WI H Sbjct: 883 QRLYVVGATMSGNQLTSADKTVEKWAAAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQ 942 Query: 719 ---------------------------PENTPLEREETIKQLM-DEQKIPKKLFSPIKND 750 P+ TP E + + Sbjct: 943 ARGLAETTIKPALVGDETEFTIEIDVNPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQ 1002 Query: 751 INEPYILNPSTIDTKGK---------------TNLESLLSDNQT-------------FNR 782 S + K + + D Sbjct: 1003 AATTTTGFQSVSEIKRAFDDSDTIDLVNADRFLGPKPPMRDLTAPAFLTETPSGISPAAI 1062 Query: 783 GLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840 G H LLQ++ + + + L ++ R E + Sbjct: 1063 GTATHLLLQLVDLAKPITMASLMALRDQLATTQVIAVDVAKHIDLTALIRFFETDLGRLL 1122 Query: 841 MSC--DSYSEVSVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888 ++ + EV S + +D++I G ID +Q + +F+YKT H+ Sbjct: 1123 LAKPQQVHREVPFSMLLPADQVFEALADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHN 1182 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + + QL++Y + L+D P L L+++ V + Sbjct: 1183 P--NTAVLVDRYRGQLNLYAQALQDLQPKPVLHRYLVFLRTGTVVDL 1227 >gi|313904430|ref|ZP_07837807.1| recombination helicase AddA [Eubacterium cellulosolvens 6] gi|313470766|gb|EFR66091.1| recombination helicase AddA [Eubacterium cellulosolvens 6] Length = 1236 Score = 360 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 160/1009 (15%), Positives = 320/1009 (31%), Gaps = 142/1009 (14%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKS 103 ++ + L +A+ Q + F+ L L + Q +I D+K+++K+ Sbjct: 252 ADIEMLEALGEATDYQACADAFASLKFGTLRRAKDIQAEDSRWVKITTVRDDVKKQVKEL 311 Query: 104 Q-----DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 Q + I F + + L + K+K + DF DL + Sbjct: 312 QKNTFGNNIGAIVREFEILR--PYVQELVRLVLRFREAFSAEKRKKNIADFNDLEHFALE 369 Query: 159 LLKKRDV------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212 +L +D ++ + ++IDE QD++ +Q ++++++ D Sbjct: 370 ILLDKDEDGRRTLRTDAAKELAESFREVMIDEYQDSNFLQERILKAVSGD-------EDG 422 Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272 F VGD KQSIY+F A P+ + I+L +FRS ++L Sbjct: 423 RFNRFMVGDMKQSIYAFRMARPEL---FLEKFNTYFPDPESTQVRIDLTRNFRSRKEVLD 479 Query: 273 VVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + +F G+ D + +++S S ++ Sbjct: 480 SSNALFRRLMIPEVGGIRYDDKAFLNYKASYPE--------PADPSFPQTELLVINREEE 531 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLI 389 + E + A +A I ++ + G + R ++ +DI+VL+R Sbjct: 532 PFSSYKSSEERMELEAAAVAAKIRRLMAGTLVRGEGDELRPLRYRDIVVLLRS---AKRW 588 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 + + + I D + I ++ R I + D+ +L+SP+ Sbjct: 589 GKVWVKILQEAGIPCYALSGEGFFDTIEIATVLNYLRLIDNPRQDIPLAAVLRSPIAGLD 648 Query: 450 EDDIFKICT----QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 ++D+ I + + +Y+ + A K + ++ + + A H+ Sbjct: 649 DEDLAWIRAKGGMEEGKVPLLYDAVLALA-EQDEKLRKFVEQLDDFRARAPRTEVHELIR 707 Query: 506 LILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPP 559 +L + + G + L + + E+ SY L I ++ Sbjct: 708 KVLEKTGYGEWAAAMPAGEQREANLKMLIEKAVDYEKTSYHGLFNFIRYIDRLKKYSVDY 767 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 +S + VRIMT+H +KGL+ PVVF+ GS+ K + SL + Sbjct: 768 GEVNLNSEADDTVRIMTIHQSKGLQFPVVFVSALGSEFNKADTTKAVLRHASLGLGLKVS 827 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 + + + + H+KK E R+LYV +TRA ++LI+ + S + + Sbjct: 828 DPEKRVQYPSVYRRVMQSHMKKQMYGEELRVLYVALTRAEEKLILTGQVSDSEKLTAAVA 887 Query: 680 TWYDMVYDSFHNDERVKKIKLTNS------------------------------INKDEW 709 + + + L + + E Sbjct: 888 MQNNFRMKRESGQDETVERMLASPMDFTALLSAKTFLEMILAVIPEEKDMKLHVVEAGEL 947 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPK-----------KLFSPIKNDINEPYILN 758 A E S + LE + +L +E+KI P + P L Sbjct: 948 AAGEVSEKMQRSAVLEEISGLAKLPEEKKIFDPEVNRMMKEVRAFSYPYEEQAKMPAKLT 1007 Query: 759 -------------------------PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793 P + K + + +RG + H L+ + Sbjct: 1008 VTEIKKRAQRTELQEDELPAAAVFEPEEEELIPKFLRGTDEEEKTGASRGTVYHHFLECL 1067 Query: 794 ------FTLPEHKR---KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844 E +R + + + R L + + Sbjct: 1068 DYGKLRPGATEEERTAFVEAERKRMLEKGLMTREDDACMYTPDFVRFLACGLGQRMKAAS 1127 Query: 845 S----YSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 + E I ++I++ G ID + + +YKT + Sbjct: 1128 DAGTLHREQPFVMDIPAKDIDSQWPEGENILVQGTIDAYFSEEGKYVLVDYKTDRIHSLD 1187 Query: 893 IE------HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 E + + QL Y L + + V + + Sbjct: 1188 AEGNPDERELVEKYHKQLEYYAAALTRITGTEVGEMYIYSVRLGREIKL 1236 >gi|270292732|ref|ZP_06198943.1| exonuclease RexA [Streptococcus sp. M143] gi|270278711|gb|EFA24557.1| exonuclease RexA [Streptococcus sp. M143] Length = 1217 Score = 360 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 161/1030 (15%), Positives = 333/1030 (32%), Gaps = 140/1030 (13%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQC 61 F + E I + LW L F ++ + + + +Q Sbjct: 229 ADFANEKEKLTEQIKQALWDLESFFRYHLDNDAKEFPKVAYLEAVQQVLDEISSLNQESD 288 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTY 117 + ++L+ K + + L + + + ++ D+ Sbjct: 289 SQAYQAVLARVVAISKEKNGRALANSSRKADLKPLADAYNDKRKAQFAKLGQLADQITVL 348 Query: 118 KMFK-STLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + LAK Y E K++ +F D+ T ++L+ + Sbjct: 349 DYQEHYHEDTWNLAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILENFP---QV 405 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY F Sbjct: 406 CEAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRF 454 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 A+P+ + + + Q+ +I L +FRS++++L+ + VF+ + + Sbjct: 455 RQADPQIFNEKFQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFARLMDQEVGEI 510 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + + + + + + +++ + R + Sbjct: 511 NYDSMHQLVFANTK-------LTPNPCNKTEFLLYDKGDSGQEKEESDEDTKLTGEMRLV 563 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + + + K+I +L R ++Y I V + Sbjct: 564 IKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGE 610 Query: 410 FILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 L ++ ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + Sbjct: 611 QNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVQEN 670 Query: 469 YIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +K N K + + A+ S +D I + Sbjct: 671 LYEKLVNAQKQDTVEKDLIHTELAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFYY 730 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANH 569 + G L + E++++ L I ++Q A + Sbjct: 731 DYVGALPNGLARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPK 790 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PG 617 + V +MT+H +KGLE P VF+++ + + + Sbjct: 791 DAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEA 850 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--- 674 + + + K L+ ++ E RLLYV MTRA +L + + + Sbjct: 851 HYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAERKLYLVGKGSREKLEAKE 910 Query: 675 ----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 N + W + F D + E Sbjct: 911 YPAANNGKLDSNTRLQARNFQDWIWAISKVFTKDNLNFSYRFVGEDQLTREAIGELENKS 970 Query: 719 P----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------ 768 P + ETIK+ ++ K + + + I P + PS I + Sbjct: 971 PLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEG 1030 Query: 769 ------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810 S G H+L+Q I L + +T Sbjct: 1031 VEIAGQSQSPEKKISFDLPDFSTKEKVTGAEIGSGTHELMQRI-DLSQQPTLASLTEILK 1089 Query: 811 KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIIS 865 + + + L I + P+ ++ Y E S K ++D ++ Sbjct: 1090 Q--VQTSPAVREKINLSKILAFFDTPLGQEILANTDHLYREQPFSMLKKDQKSQEDFVVR 1147 Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 G +D + + I +F+YKT + E + + QL++Y + L +Y +++ LI Sbjct: 1148 GILDGYLLYENRIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYLI 1205 Query: 926 YVSEPKVFII 935 + + +V ++ Sbjct: 1206 LLGKDEVQVV 1215 >gi|227892521|ref|ZP_04010326.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus ultunensis DSM 16047] gi|227865642|gb|EEJ73063.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus ultunensis DSM 16047] Length = 1207 Score = 360 bits (922), Expect = 9e-97, Method: Composition-based stats. Identities = 154/1021 (15%), Positives = 317/1021 (31%), Gaps = 134/1021 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQASQTQCIEERFSLL 69 + L + + + + E + + + + LL Sbjct: 217 LLDSFGDLQGKINNHLEATIFETKELKKCRDDFTLFEQNLDNFITALENDEDYDHQRKLL 276 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI---------RDRFNTYKMF 120 + ++ KN ++I ++++ +++D+ +++ + Sbjct: 277 RACTFNGRYRKSKNW-DEDILDFYNEMQKIKDEAKDQIFDTFTSFFATNEKEQLEIMQDG 335 Query: 121 KSTLASLTLAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEIN 178 + +++++ A+ L + + K+ LD+ D+ +L + S R + Sbjct: 336 EKIVSAISQAEIALIQRFNKLKRDENWLDYSDMEQLAYQILSQDTSSSKMAREFYQNKFK 395 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 IL+DE QD + +Q ++I+ + + TLF VGD KQSIY F AEP L Sbjct: 396 EILVDEYQDINALQEKIIQQV---------KNPEKNTLFMVGDVKQSIYGFRQAEPSLFL 446 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 ++ + I L +FRST + V+ +F+ ++ + + Sbjct: 447 KKYHDFASDQDDHE---ERILLSDNFRSTQPVAETVNTLFNSILSSNFGGINYQHEGQLI 503 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + +V+ + N ++ + + I + Sbjct: 504 FGAKYYPENLPKASEVIVHKKEKNNEEE----------SNSDVDFSEIQMVLARIKQLKK 553 Query: 359 TD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + R ++ DI +L R D + + D Sbjct: 554 EHVQIYDSDKKEVRELKYSDIAILTRSHSDNLN----IMQEFAKENVPLFVTDAENYFQT 609 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKF 473 + +M + I + + D+ V +L+SPLFNF E ++ I + + Sbjct: 610 FELTVMMNYLKIIDNPDQDIPLVTVLRSPLFNFGEKELAMIRIKSKNSSFYSALTSYVGV 669 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEF 532 + K + + + +L A + I + + G + L+ Sbjct: 670 GDTLSKKCKDFLNQLADLREFATTHRISELIWSIYARTNLIEIMTALPNGEQRRVNLEAL 729 Query: 533 LNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 E + L + I+ + Q N VR+MT+H +KGLE P+ Sbjct: 730 YERASSYESAGFKGLYQFINFINRMRQSQKDLAQPLLSKEAGNAVRLMTIHGSKGLEFPI 789 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF + Q I P GI + + + + + K+ EE Sbjct: 790 VFYLGMHHQYQLRDLKGNYVINPDSV---GITLREKHYRVDSLVKAMGNVTKKRQLLEEE 846 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---VYDSFHNDERVKKIKLTNSI 704 R+LYV +TRA +LI+ + ++K + D + + + ++ Sbjct: 847 ARVLYVALTRAKQKLILVGDIPSFDKKVKDWSNELDHKGQLPLADKLSATTPLSFMGPAL 906 Query: 705 NKDEWIAYEWST---------------------------HHPENTPLEREETIKQLMDEQ 737 D +A + + + ++ + L Sbjct: 907 AFDRHVAIKMNDITNSVDQSQSLLFVDYSDEEIQKMNNSNENQSEDEIDDNLRSLLTKTT 966 Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-------------------- 777 + + P K+ S I +++ L ++ Sbjct: 967 RNMYQFNYPFKDASETTAYQAVSEIKKVFNDPIDTDLENSHVLTSTNRYLQPIDTKPNFL 1026 Query: 778 -----QTFNRGLIIHKLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 G H +LQ + I + K +L Sbjct: 1027 YQTKFTGAEIGTATHLILQYYNYAGDGSTDQLDQEIAELIDQ--KKLNPDIVSSLKKDQI 1084 Query: 830 RLLENPMMT---TAMSCDSYSEVSVS---------GKINCPKKDIIISGRIDQISISQQN 877 + + + EV S + P I++ G ID ++ Sbjct: 1085 EWFVHSDFSKDFWKFPENLKREVDFSSLLSAKTLFENFSDPNAKILVHGTIDGYFVTNNG 1144 Query: 878 IFIFEYKTHHHV----PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 I +F+YKT H + IE I + QL +YE+ L + K + LI + + Sbjct: 1145 IILFDYKTDHVNKSHLDKSIELIKEKYTGQLRLYERALNEFSQKKVIGKYLILLDAKRAV 1204 Query: 934 I 934 Sbjct: 1205 E 1205 >gi|257881059|ref|ZP_05660712.1| UvrD/REP helicase [Enterococcus faecium 1,231,502] gi|257889644|ref|ZP_05669297.1| UvrD/REP helicase [Enterococcus faecium 1,231,410] gi|260559204|ref|ZP_05831390.1| UvrD/REP helicase [Enterococcus faecium C68] gi|293563136|ref|ZP_06677601.1| recombination helicase AddA [Enterococcus faecium E1162] gi|294623302|ref|ZP_06702164.1| recombination helicase AddA [Enterococcus faecium U0317] gi|314939883|ref|ZP_07847089.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04] gi|314943730|ref|ZP_07850469.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C] gi|314949686|ref|ZP_07853004.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082] gi|314953232|ref|ZP_07856171.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A] gi|314993688|ref|ZP_07859036.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B] gi|314997395|ref|ZP_07862346.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01] gi|257816717|gb|EEV44045.1| UvrD/REP helicase [Enterococcus faecium 1,231,502] gi|257826004|gb|EEV52630.1| UvrD/REP helicase [Enterococcus faecium 1,231,410] gi|260074961|gb|EEW63277.1| UvrD/REP helicase [Enterococcus faecium C68] gi|291597270|gb|EFF28459.1| recombination helicase AddA [Enterococcus faecium U0317] gi|291604914|gb|EFF34383.1| recombination helicase AddA [Enterococcus faecium E1162] gi|313588530|gb|EFR67375.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01] gi|313591862|gb|EFR70707.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B] gi|313594698|gb|EFR73543.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A] gi|313597593|gb|EFR76438.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C] gi|313640846|gb|EFS05426.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04] gi|313643944|gb|EFS08524.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082] Length = 1240 Score = 360 bits (922), Expect = 9e-97, Method: Composition-based stats. Identities = 160/1001 (15%), Positives = 326/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +EE ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ W+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDVWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ KDI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658 Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + V Y + +K +H K + +A+ S D I Sbjct: 659 PELASIRLANRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704 + + + + + ++K + Sbjct: 899 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + + + + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S + + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238 >gi|227535023|ref|ZP_03965072.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|301066540|ref|YP_003788563.1| ATP-dependent exoDNAse [Lactobacillus casei str. Zhang] gi|227187338|gb|EEI67405.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|300438947|gb|ADK18713.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus casei str. Zhang] Length = 1234 Score = 360 bits (922), Expect = 9e-97, Method: Composition-based stats. Identities = 162/1041 (15%), Positives = 315/1041 (30%), Gaps = 131/1041 (12%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQASQTQC 61 + + + +WP Q+ I ++ + N +A + + Sbjct: 205 APEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQLPNPIWYQQIQADLAPLQTLLET 264 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--------------F 107 + + S ++ +F I ++ ++ D K K +D Sbjct: 265 NAPTYDTVRSVLISHEFAAWSRI-SKGLDDADKDTKNAAKDLRDAAKKTWQNKLAPTFAL 323 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165 + + +A K V D+ D+ N +L+ Sbjct: 324 AAEQIGDLLREAQPLVATLANVALKFEDALTAEKAARHVQDYSDIAHNALRILQQKDPQT 383 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 A I + +++DE QD S +Q ++ +++ ++P F VGD KQS Sbjct: 384 GAPIADNYRASFDEVMVDEYQDISPLQEALLAAVST---------TTPGDRFMVGDVKQS 434 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284 IY F A+P+ + + + Q T+ I L +FRST ++L + +FS + Sbjct: 435 IYGFRLADPQLFIHKYQTFQDAPTDPAAP-ERIILAENFRSTKNVLAFTNLIFSQIMDPE 493 Query: 285 -QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 LS D+ +++ + G + + D A+ Sbjct: 494 VGDLSYDNAAALKYGALDYGDAHPAVKVLLYSKATSDEDSSDASELPGDADDNEPVDIAT 553 Query: 344 ILARRIAYTISNMIG----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 + + I +I + R I +DI +L R+ LI Sbjct: 554 GQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTSQNSLIQTQFAA---- 609 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 + + D + ++AL + I +Q+ D+ V +L+SP+ S D + I Sbjct: 610 AGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVLRSPIVGLSADQLALIRLA 669 Query: 460 RHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 + E A H + +A+ I Sbjct: 670 AKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRDLARENDLVTLLWAIYQDT 729 Query: 512 KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAH 565 G++ L ++ E + L I + + Sbjct: 730 GFLDYVGGTPGGSQRQANLQALIDRARTYEAGGFKGLFAFIHFITLMQKQDQDLAMPAQV 789 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 +++ V++MT+H +KGLE PVVFL+ F+ + I+ + Sbjct: 790 DPDNDAVKLMTIHKSKGLEFPVVFLMQANKH-FNMRDQTGTAILTKQGIGIKWLDPETRV 848 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + + T E RLLYV +TRA +L + + + N+ S +T Sbjct: 849 EYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGNQLTSADKTVEKWA 908 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--------------------------- 718 + + + + + +WI H Sbjct: 909 AAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQARGLAETTIKPALVGDETEFTIEIDV 968 Query: 719 -PENTPLEREETIKQLM-DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE----- 771 P+ TP E + + S + K + Sbjct: 969 NPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQAATTTTGFQSVSEIKRAFDDPDTIDL 1028 Query: 772 -----------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--FIT 806 S G H LLQ++ + + Sbjct: 1029 VNADRFLGPKPPMRDLTAPAFLTETPSGISPAAIGTATHLLLQLVDLAKPITMASLRALR 1088 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCP------ 858 T + L ++ R E + ++ + EV S + Sbjct: 1089 DQLTTTQVIAVDVAKHIDLTALIRFFETDLGRLLLAKPQQVHREVPFSMLLPADQVFEAL 1148 Query: 859 ----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 +D++I G ID +Q + +F+YKT H+ + + QL++Y + L+D Sbjct: 1149 ADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHNP--NTAVLVDRYRGQLNLYAQALQDL 1206 Query: 915 YPNKSLVCLLIYVSEPKVFII 935 P L L+++ V + Sbjct: 1207 QPKPVLHRYLVFLRTGTVVDL 1227 >gi|325570415|ref|ZP_08146192.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus casseliflavus ATCC 12755] gi|325156625|gb|EGC68802.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus casseliflavus ATCC 12755] Length = 1225 Score = 360 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 149/1026 (14%), Positives = 315/1026 (30%), Gaps = 138/1026 (13%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70 ++ + + + + + E G +TL+ ++ + + Sbjct: 233 KTAAHLLQAAQDYARSDEAMEKAALLIDTELG------MVETLKALLDADDVDGFYEQIQ 286 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMFKSTL 124 + +K +E++++ L++ KK ++ ++ Sbjct: 287 VLRFARYPAFRK-PEQKELSQEIKPLRDDAKKLVEQLKAAFPYPPAEMMELLHRSAPVVE 345 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 + + ++E K LDF DL T +L+ + +L+DE Sbjct: 346 KMAAMTEAFMKAFQERKLSKGRLDFNDLEHFTLQILQGDGSGSEASTYYRNRFEEVLVDE 405 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QD + +Q ++ + + +P +F VGD KQSIYSF A+P + + Sbjct: 406 YQDVNRLQEAILYWVRQ-------VDHNPGNMFMVGDVKQSIYSFRLADPTLFIEKYLAF 458 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + I L +FRS +D+L + VF + + + Sbjct: 459 ET-----ENGGRRIVLAENFRSRSDVLDFTNLVFQQLMDERVGQIPYDEAAALITGFPHF 513 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 + +++ + +Q + + A I +I + + Sbjct: 514 PESDAFATELLLYEKEHESEEQLI----------DDKTEGEMQITALKIRELIESKFMIY 563 Query: 365 NGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 + K R I DI++L RK+ +I + + + I + ND I+ + Sbjct: 564 DKKAKANRPITYNDIVLLTPTRKNNLVILDVFK----QFGIPMAVNDAQNYFQATEIQTV 619 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481 ++L + I + D+ V +L+SP+ +ED + +I ++ + S Sbjct: 620 VSLLQIIDNPYQDIPLVAVLRSPIVGLTEDQLAEIRLANRSSDYYDAVLDYHVQQEESPL 679 Query: 482 QH----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFT 536 + +++ A+ I + G + L ++ Sbjct: 680 WQTVDGFLAKLNQWREEARRLPIPTLLWQIYEDTAYLDYVVGLPAGQQRYANLVALIHRA 739 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVD 592 + E++S+ L + I +E+ K + VR+MTVH +KGLE PVVFL+D Sbjct: 740 EKYEKSSFRGLYQFIRFIEKMQEKNKDLAEPVATPVEDAVRVMTVHASKGLEFPVVFLLD 799 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 T K+ L K + + K E R LY Sbjct: 800 TTKFFNYQDFQKRYIFEEQLGAGIQYVNPAENLKFETLPFQAIKQVRLKKALSEEMRKLY 859 Query: 653 VGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHND 692 V +TRA +L + + + + + D V + Sbjct: 860 VALTRAEQKLFLVGSYKNQADAFKTWQSGLTQAEMVLDPALRLVARGSLMDWVGRTLMRH 919 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK----------- 741 ++ + S K N ++ + L ++ + Sbjct: 920 PDMEAVFSEASERKRTIDHPAHFRLSWWNQETITQQVQETLAPVEESKRLLAPDSNIDDL 979 Query: 742 ----KLFSPIKNDINEPYILNPSTI--------------------------------DTK 765 P + + S + + Sbjct: 980 LKRLAYRYPYQKATQTTSYQSVSELKRLYNDPDDQQTTLLEWRSVSEKTNPQQYRYVQDE 1039 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + + G H +LQ+I + K + ++E + Sbjct: 1040 LAKPKFLQETKPLASSIGTATHTVLQMIPLGMTPTQDTLALLIAELVKKQFFSEEIAKKI 1099 Query: 826 LS--ITRLLENPMMTTAMSCDS---YSEVSVSG---------KINCPKKDIIISGRIDQI 871 I + + ++ S E S + P ++I G ID Sbjct: 1100 DRSSILWFYQTE-LGELLNRSSDVVKREQPFSMLKEADTIFEGFDEPDAPLLIHGIIDGY 1158 Query: 872 SISQQNIFIFEYKTHHHVPQEIE---HIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYV 927 I ++++KT + + + + QL +Y + L+ + NK + L+ + Sbjct: 1159 IELADEIILYDFKTDDVFGSQAQIEKKMRERYYGQLKLYCQALEKAL-NKPVKQTYLVLL 1217 Query: 928 SEPKVF 933 + Sbjct: 1218 KPKMIV 1223 >gi|315150316|gb|EFT94332.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0012] Length = 1264 Score = 360 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 159/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEATDYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G IH LLQ+I T P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTAIHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I E + + E S I + D++I G ID Sbjct: 1130 EQIVAFFETALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|261207737|ref|ZP_05922422.1| UvrD/REP helicase [Enterococcus faecium TC 6] gi|294614014|ref|ZP_06693944.1| recombination helicase AddA [Enterococcus faecium E1636] gi|260078120|gb|EEW65826.1| UvrD/REP helicase [Enterococcus faecium TC 6] gi|291593121|gb|EFF24700.1| recombination helicase AddA [Enterococcus faecium E1636] Length = 1240 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 162/1032 (15%), Positives = 332/1032 (32%), Gaps = 133/1032 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT---ILKKAQTLQQASQTQCIEERFSLLSSF 72 + D++ +E N ++ + + +A +EE ++ L Sbjct: 228 VLADIYQCVQLYEQMTQLAQGEGLEKMNEQVAGEQQQIKNIYEAFSQDRLEEAYAGLEQL 287 Query: 73 FLTQKFTPQKNIIT------QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 + + +K + + + K+ L +++ KS + T K Sbjct: 288 TFSTFKSSRKAELKEISNEVKGMRDKAKKLIQQISKSYFPVSPSQMEELTDKALPLVEEM 347 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILI 182 + + + K++ VLDF DL +L ++ AW+ ++ +++ Sbjct: 348 TKVTQSFMDGFSMRKREKGVLDFNDLEHLALQILTEKTKDAWLPSEASKHYRKKFKEVMV 407 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q ++ L E + +F VGD KQSIYSF A+P + + Sbjct: 408 DEYQDVNQLQEAILYWLRE-------PDDTKGNMFMVGDVKQSIYSFRLADPSLFIGKYE 460 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 K+ + I L +FRS ++L+ + +F + + + Sbjct: 461 NFSKK-----EGGRRIVLAENFRSRKEVLSFTNLIFEQLMDPAVGQINYDEAAKLIQGFS 515 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 Q +++ Q + E T E + I +I + + Sbjct: 516 DFPENEQFEPEIMIYEKEQEESEIEIPTDDILEDKTEGELFMT----GLKIRQLIDSSFM 571 Query: 363 FSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + K R I+ KDI++L +K+ I + + L I + ND I+ Sbjct: 572 IYDKKSKKSRPIEYKDIVLLTPTKKNNLTILEIFKTL----DIPLEMNDAQNYFQATEIR 627 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANC 476 +++L + I + D+ +L+SP+ E ++ I + V Y + Sbjct: 628 TMISLLQLIDNPYQDIPLAAVLRSPIVGLIEPELASIRLADRAHTYYDAVLAYQASNEDE 687 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535 +K +H K + +A+ S D I + + G + L ++ Sbjct: 688 LAAKLEHFGKQLEHWRELARRSSITDLLWDIYYKTGYLEYVVGLPAGAQRQANLYALVDR 747 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLV 591 EQ+S+ L + + +E+ K N VR+MT+H +KGLE PVVFL+ Sbjct: 748 AKAYEQSSFRGLYQFVRFIEKMQEKDKDLAEPVISIEDNAVRVMTIHASKGLEFPVVFLL 807 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 D + + L + + + E R L Sbjct: 808 DMTKEFNLQDLRNRYAFEEKLGAGIRYMDPETRVLYDTLPFQAIKLAKQNKLLSEEMRKL 867 Query: 652 YVGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHN 691 YVG+TRA +L I + + + + + + Sbjct: 868 YVGLTRAEQKLFIVGSYKNKEQMIQTWSEAADHEELVFDPALRLKGRSSLMNWIGYGLIR 927 Query: 692 DERVKKIKLTN------------------SINKDEWIAYEWSTHHPENTPLEREETIKQL 733 ++K + + N + +E L Sbjct: 928 HPEMQKYLEEEISTSLLQHSNAQFSISWMNQQSIIEQRQLLAEKELVNLDQQMKEDETLL 987 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------------- 778 D + P + + S I + ++ S Sbjct: 988 ADSLQKRLAYEYPYQASSQTTSYQSVSEIKRLFEDPDDTQESRLTLESSQNKAASRQFRY 1047 Query: 779 ------------------TFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAK 819 G H LLQ++ +P + + + + Sbjct: 1048 TQEQLAEPKFLQKDRQVSAATVGTATHALLQLLPLEMPTTESIHQKLQELVRKRLVDEKV 1107 Query: 820 EYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP---------KKDIIISGRI 868 K + SI + + ++ + E S + + +++I G + Sbjct: 1108 AKKVDVSSIIWFFQTELGQQLIANKENVKREQPFSMLLPADEVFQDYLNQEDELLIHGIV 1167 Query: 869 DQISISQQNIFIFEYKTHHH-VPQEIEH---IPYTHIAQLSIYEKILKDSYPNKSLV-CL 923 D + ++ I+++KT P + I + QL +Y++ + ++ NK + Sbjct: 1168 DGYLEEKDHLNIYDFKTDFILPPDDPAEIDTIVQKYQGQLRLYQQAMSEAL-NKPVENVF 1226 Query: 924 LIYVSEPKVFII 935 LI + ++ I Sbjct: 1227 LILLRVKQIINI 1238 >gi|331266377|ref|YP_004326007.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains helicase and exonuclease domains) [Streptococcus oralis Uo5] gi|326683049|emb|CBZ00666.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains helicase and exonuclease domains) [Streptococcus oralis Uo5] Length = 1217 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 157/1025 (15%), Positives = 335/1025 (32%), Gaps = 138/1025 (13%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEER 65 + ++ E I + LW L F ++ + + + +Q + Sbjct: 233 IEKDKLTEQIKQALWDLESFFRYHLDNDANEFPKAAYLENVQLVLDEIGSLNQESDSQAY 292 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFK 121 ++L+ K +++ L + + + ++ D+ + Sbjct: 293 QAVLARIIAISKEKNGRSLANSSRKADLKPLADAYNDERKAQFAKLGQLADQITILDYQE 352 Query: 122 S-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + LAK Y E K++ +F D+ T ++L+ +R Sbjct: 353 RYHEDTWELAKTFQTFMSDFVEAYRECKRQENAFEFADISHFTIEILENFP---QVREAY 409 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+ Sbjct: 410 QERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQAD 458 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ + + + ++ +I L +FRS++++L+ + +F+ + + + + Sbjct: 459 PQIFNEKFQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDIFARLMDQEAGEINYDS 514 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 + + + + ++E + + R + I Sbjct: 515 MHQLVFANTKLTPNPDNKAEFLLYDKGDSGQEEEESQTETKLTGEM-------RLVIKEI 567 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + + + K+I +L R ++Y I V + Sbjct: 568 LKLHQE---------KGVTFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNY 614 Query: 414 -DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 L ++ ++ R I + D + V ++KSP+F+F ED++ ++ Q+ E + +K Sbjct: 615 LQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKVEDKVQENLYEK 674 Query: 473 FANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 N K + + + S +D I + Sbjct: 675 LVNAQKLVTNQKELIHTALAEKLNQFMDILDSWRLYTKTHSLYDLIWKIYIDRFYYDYVG 734 Query: 519 S-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVR 573 + G L + E++++ L I ++Q A + + V Sbjct: 735 ALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVE 794 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIW 621 +MT+H +KGLE P VF+++ + ++ + Sbjct: 795 LMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKVETGAVEAHYPK 854 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------- 674 + + + + L+ ++ E RLLYV MTRA +L + + + Sbjct: 855 TIKLSIPSLTYTQNEEELQLASYSEQMRLLYVAMTRAERKLYLVGKCSREKLEAKEYPTA 914 Query: 675 ------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW----STHH 718 N + W + F D + + S Sbjct: 915 ENGKLDKHTRLQAKNFQDWIWAISKVFARDNLNFSYRFVGEDQLTREAIGQLENKSSLQD 974 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------- 768 + ETIK+ ++ K + + + I P + PS I + Sbjct: 975 RSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIA 1034 Query: 769 --------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814 S G H+L+Q I + + K + Sbjct: 1035 GQSQSVDKKISFDLPDFSTKERVTGAVIGSATHELMQRIDLSQQPTLATLTETL--KQVQ 1092 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGK--INCPKKDIIISGRIDQ 870 PA K L + + P+ ++ Y E S + D ++ G +D Sbjct: 1093 TSPAVRKKINLSKVLAFFDTPLGQEILANTDYLYREQPFSMLKWDQKSQGDFVVRGILDG 1152 Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 + I +F+YKT + E + + QL++Y + L +Y +++ LI + + Sbjct: 1153 YLLYDDRIVLFDYKTDRY--DEPSQLIERYRGQLALYGEALSRAYSIENIEKYLILLGKD 1210 Query: 931 KVFII 935 +V ++ Sbjct: 1211 EVQVV 1215 >gi|302879642|ref|YP_003848206.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] gi|302582431|gb|ADL56442.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] Length = 1099 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 188/968 (19%), Positives = 342/968 (35%), Gaps = 123/968 (12%) Query: 5 FGLSLNESYEL-IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 G + +L+ P+F +S + K + L Q Sbjct: 213 LGSEFDVDLTRDPLAELFDRPHFSSQ--VHALSQLLNASAAQKAKAVRLLAPLEGLQLAA 270 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 RF LL T+K P+ + ++ L + ++ + + + + ++ T +++++ Sbjct: 271 LRFELLWDELFTKKNEPRAIKANKGQDEV--QLGQAVELVRAQLLDVYNQLQTQQLYQTN 328 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 +L L A Y++ K++ LDF DL LL D + +++YK+D H+L+D Sbjct: 329 CHALRCGVGLLAAYQQLKQRQQCLDFGDLEWRVCQLLNDSDHAEYLQYKLDSRYRHVLLD 388 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ +QW++++S +F S T+F VGD KQSIY F A+ + +R Sbjct: 389 EFQDTNPLQWQILQS----WFAASKAVDSTPTVFVVGDPKQSIYRFRRADARLFDVVRRY 444 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + K + R++ +L V+ VF QG + H++ + Sbjct: 445 LVQDYAALHLKK-----NETRRNSPAVLVAVNGVFDGLPEYQGF-------VTHQAHQTS 492 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS------ASILARRIAYTISNMI 357 G V + V S Q + + L + + A + A I+ ++ Sbjct: 493 LPGYVGVLPLAVLPEKSDTPSTQNGKLTLRNPLQRAYPDVDAGTRELEAAQFAEKINQIV 552 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 G + G RV Q DI+VLVR+R + R I + + R L D L Sbjct: 553 GVWQVQDEGLSRVAQFSDIMVLVRRRTHLKIYEQALR----RESIPFLTSRRGGLLDTLE 608 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------------------- 458 D+ +L F+++ DL+ L++P+F+ ++DD+ KI Sbjct: 609 ASDIQSLLTFLITPFADLALAHTLRTPIFSCTDDDLMKIQASGLRMQDAGGGDSSASELN 668 Query: 459 --QRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 R + ++ ++ G Q + + I +A HD I + Sbjct: 669 PESRVLNPSWWQRLKSLVETGTATPALQRAHQLLQAWILLADKLPVHDLLDRIYFEGDAQ 728 Query: 515 QQFISR----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-- 568 ++ + V+ L FL L + Y SL + EL + Sbjct: 729 ARYAAAVPEVMCATVLANLQAFLEIALNVDSGRYPSLSGFLRELAELRRADDNESPDEGR 788 Query: 569 ----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 N +RI TVH AKGLE+P+V+L+D ++ + + P+ P Sbjct: 789 VAQAGNAIRIYTVHEAKGLEAPIVWLLDANARPPVDRGYDVLVDWPTDAKAPVHFSIYGD 848 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 SR + + E LLYV MTRA L++ + WY Sbjct: 849 KASRGGVRECYFQQEAALALREDLNLLYVAMTRAKQALLVSGSGAQ------LEHCWYQR 902 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + D+ + P + Sbjct: 903 IADTTEGAAENPLAVAPLLNQRSSIFNPLSCLPDPRLLQV-------------------- 942 Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804 P + S + N +G+ +H LLQ + R+N Sbjct: 943 --------LPVGMRKSVM--------------NDAQRQGVWLHGLLQYLAIPEALFRENQ 980 Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864 + P+ L +L P ++ Y + + + Sbjct: 981 EQEL--QRKLNIPSALMPELWRQAQVMLSAPALSRFFDAQYYLQAANEVGYVNASGQLR- 1037 Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 RID++ + +++ +YKT + +H AQL Y ++ YP+K++ C + Sbjct: 1038 --RIDRLVEFETEVWVLDYKTG------LNSAMQSHAAQLEEYRIAMQAVYPDKAVRCAV 1089 Query: 925 IYVSEPKV 932 I+ + Sbjct: 1090 IFAEGNLL 1097 >gi|257082924|ref|ZP_05577285.1| exonuclease RexA [Enterococcus faecalis E1Sol] gi|256990954|gb|EEU78256.1| exonuclease RexA [Enterococcus faecalis E1Sol] Length = 1264 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 158/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWQASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E +S + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSSELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D Sbjct: 770 FQFVRFIEKMQAKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKGFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNQEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|294618395|ref|ZP_06697972.1| recombination helicase AddA [Enterococcus faecium E1679] gi|291595345|gb|EFF26661.1| recombination helicase AddA [Enterococcus faecium E1679] Length = 1240 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 164/1032 (15%), Positives = 334/1032 (32%), Gaps = 133/1032 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT---ILKKAQTLQQASQTQCIEERFSLLSSF 72 + D++ +E N ++ + + +A +EE ++ L Sbjct: 228 VLADIYQCVQLYEQMTQLAQGEGLEKMNEQVAGEQQQIKNIYEAFSQDRLEEAYAGLEQL 287 Query: 73 FLTQKFTPQKNIIT------QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 + + +K + + + K+ L +++ KS + T K Sbjct: 288 TFSTFKSSRKAELKEISNEVKGMRDKAKKLIQQISKSYFPVSPSQMEELTDKALPLVEEM 347 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILI 182 + + + K++ VLDF DL +L ++ AW+ ++ +++ Sbjct: 348 TKVTQSFMDGFSMRKREKGVLDFNDLEHLALQILTEKTKDAWLPSEASKHYRKKFKEVMV 407 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q ++ L E + +F VGD KQSIYSF A+P + + Sbjct: 408 DEYQDVNQLQEAILYWLRE-------PDDTKGNMFMVGDVKQSIYSFRLADPSLFIGKYE 460 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 K+ + I L +FRS ++L+ + +F + + + Sbjct: 461 NFSKK-----EGGRRIVLAENFRSRKEVLSFTNLIFEQLMDPAVGQINYDEAAKLIQGFS 515 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 Q +++ Q + E T E + I +I + + Sbjct: 516 DFPENEQFEPEIMIYEKEQEESEIEIPTDDILEDKTEGELFMT----GLKIRQLIDSSFM 571 Query: 363 FSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + K R I+ KDI++L +K+ I + + L I + ND I+ Sbjct: 572 IYDKKSKKSRPIEYKDIVLLTPTKKNNLTILEIFKTL----DIPLEMNDAQNYFQATEIR 627 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANC 476 +++L + I + D+ +L+SP+ E ++ I + V Y + Sbjct: 628 TMISLLQLIDNPYQDIPLAAVLRSPIVGLIEPELASIRLADRAHTYYDAVLAYQASNEDE 687 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535 +K +H K + +A+ S D I + + G + L ++ Sbjct: 688 LAAKLEHFGKQLEHWRELARRSSITDLLWDIYYETGYLEYVVGLPAGAQRQANLYALVDR 747 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLV 591 EQ+S+ L + + +E+ K N VR+MT+H +KGLE PVVFL+ Sbjct: 748 AKAYEQSSFRGLYQFVRFIEKMQEKDKDLAEPVISIEDNAVRVMTIHASKGLEFPVVFLL 807 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 D + + L + + + E R L Sbjct: 808 DMTKEFNLQDLRNRYAFEEKLGAGIRYMDPETRVLYDTLPFQAIKLAKQNKLLSEEMRKL 867 Query: 652 YVGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHN 691 YVG+TRA +L I + + + + + + Sbjct: 868 YVGLTRAEQKLFIVGSYKNKEQMIQTWSEAADHEELVFDPALRLKGRSSLMNWIGYGLIR 927 Query: 692 DERVKKIKLTN------------------SINKDEWIAYEWSTHHPENTPLEREETIKQL 733 ++K + + N + +E L Sbjct: 928 HPEMQKYLEEEISTSLLQHSNAQFSISWMNQQSIIEQRQLLAEKELVNLDQQMKEDETLL 987 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------------- 778 D + P + + S I + ++ S Sbjct: 988 ADSLQKRLAYEYPYQASSQTTSYQSVSEIKRLFEDPDDTQESRLTLESSQNKAASRQFRY 1047 Query: 779 ------------------TFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAK 819 G H LLQ++ +P + + + + Sbjct: 1048 TQEQLAEPKFLQKDRQVSAATVGTATHALLQLLPLEMPTTESIHQKLQELVRKRLVDEKV 1107 Query: 820 EYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP---------KKDIIISGRI 868 K + SI + + ++ + E S + + +++I G + Sbjct: 1108 AKKVDVSSIIWFFQTELGQQLIANKENVKREQPFSMLLPADEVFQDYPNQEDELLIHGIV 1167 Query: 869 DQISISQQNIFIFEYKTHHH----VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CL 923 D + ++ I+++KT P EI+ I + QL +Y++ + ++ NK + Sbjct: 1168 DGYLEEKDHLNIYDFKTDFILPPDDPAEIDAIVQKYQGQLRLYQQAMSEAL-NKPVENVF 1226 Query: 924 LIYVSEPKVFII 935 LI + ++ I Sbjct: 1227 LILLRVKQIINI 1238 >gi|191638484|ref|YP_001987650.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23] gi|251764527|sp|B3WEJ1|ADDA_LACCB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|190712786|emb|CAQ66792.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23] gi|327382519|gb|AEA53995.1| ATP-dependent nuclease subunit A [Lactobacillus casei LC2W] gi|327385716|gb|AEA57190.1| ATP-dependent nuclease subunit A [Lactobacillus casei BD-II] Length = 1234 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 163/1041 (15%), Positives = 315/1041 (30%), Gaps = 131/1041 (12%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQASQTQC 61 + + + +WP Q+ I ++ + N +A + + Sbjct: 205 APEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQLPNPIWYQQIQADLAPLQTLLET 264 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--------------F 107 + + S ++ +F I ++ ++ D K K +D Sbjct: 265 NAPTYDTVRSVLISHEFAAWSRI-SKGLDDADKDTKNAAKDLRDAAKKTWQNKLAPTFAL 323 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165 + + +A K V D+ D+ N +L+ Sbjct: 324 AAEQIGDLLREAQPLVATLANVALKFEDALTAEKAARHVQDYSDIAHNALRILQQKDPQT 383 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 A I + +++DE QD S +Q ++ +++ ++P F VGD KQS Sbjct: 384 GAPIADNYRASFDEVMVDEYQDISPLQEALLAAVST---------TTPGDRFMVGDVKQS 434 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284 IY F A+P+ + + + Q T+ I L +FRST ++L + +FS + Sbjct: 435 IYGFRLADPQLFIHKYQTFQDAPTDPAAP-ERIILAENFRSTKNVLAFTNLIFSQIMDPE 493 Query: 285 -QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 LS D+ +R+ + G + + D A+ Sbjct: 494 VGDLSYDNAAALRYGALDYGDAHPAVKVLLYSKATSDEDSSDASELPGDADDNEPVDIAT 553 Query: 344 ILARRIAYTISNMIG----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 + + I +I + R I +DI +L R+ LI Sbjct: 554 GQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTSQNSLIQTQFAA---- 609 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 + + D + ++AL + I +Q+ D+ V +L+SP+ S D + I Sbjct: 610 AGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVLRSPIVGLSADQLALIRLA 669 Query: 460 RHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 + E A H + +A+ I Sbjct: 670 AKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRDLARENDLVTLLWAIYQDT 729 Query: 512 KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAH 565 G++ L ++ E + L I + + Sbjct: 730 GFLDYVGGTPGGSQRQANLQALIDRARTYEAGGFKGLFAFIHFITLMQKQDQDLAMPAQV 789 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 +++ V++MT+H +KGLE PVVFL+ F+ + I+ + Sbjct: 790 DPDNDAVKLMTIHKSKGLEFPVVFLMQANKH-FNMRDQTGTAILTKQGIGIKWLDPETRV 848 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + + T E RLLYV +TRA +L + + + N+ S +T Sbjct: 849 EYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGNQLTSADKTVEKWA 908 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--------------------------- 718 + + + + + +WI H Sbjct: 909 AAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQARGLAETTIKPALVGDETEFTIEIDV 968 Query: 719 -PENTPLEREETIKQLM-DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE----- 771 P+ TP E + + S + K + Sbjct: 969 NPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQAATTTTGFQSVSEIKRAFDDPDTIDL 1028 Query: 772 -----------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--FIT 806 S G H LLQ++ + + Sbjct: 1029 VNADRFLGPKPPMRDLTAPAFLTETPSGISPAAIGTATHLLLQLVDLAKPITMASLRALR 1088 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCP------ 858 T + L ++ R E + ++ + EV S + Sbjct: 1089 DQLTTKQVIAVDVAKHIDLTALIRFFETDLGRLLLAKPQQVHREVPFSMLLPADQVFEAL 1148 Query: 859 ----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 +D++I G ID +Q + +F+YKT H+ + + QL++Y + L+D Sbjct: 1149 ADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHNP--NTAVLVDRYRGQLNLYAQALQDL 1206 Query: 915 YPNKSLVCLLIYVSEPKVFII 935 P L L+++ V + Sbjct: 1207 QPKPVLHRYLVFLRTGTVVDL 1227 >gi|148378439|ref|YP_001252980.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 3502] gi|251764512|sp|A5HYY0|ADDA_CLOBH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|148287923|emb|CAL81989.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC 3502] Length = 1279 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 158/949 (16%), Positives = 308/949 (32%), Gaps = 150/949 (15%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKI 173 ++ S A L + YE K++ ++DF D+ +L + + I Sbjct: 331 LYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALDY 390 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRT 215 ++ +LIDE QD++L+Q ++ ++ + Sbjct: 391 RKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPQICLDIPN 450 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ L + G K ++L +FRS +++ V+ Sbjct: 451 RFMVGDVKQSIYRFRQAKPEIFLDKYNEYS---EEEGTKNRKVKLFKNFRSRKEVINGVN 507 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 +F + D T + ++ ++ D Sbjct: 508 YLFKQIMSKTIGELDYTEEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDE 567 Query: 336 LPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + + R +A I ++G + G+ R +Q +DI++L+R + Sbjct: 568 EEALDNIQLEGRLVAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAP 627 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 I I V + D IK +++L + I + D+ + +L+SP+ +F Sbjct: 628 I---FVEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASF 684 Query: 449 SEDDIFKIC------------------TQRHETETVYEYIQKFANCGISKFQH------- 483 ++D++ I + + ++ Y + + N + Sbjct: 685 TDDELIDIRMVNKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKN 744 Query: 484 ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538 I+ + + +F + + + G + L + Sbjct: 745 KICSFIEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQ 804 Query: 539 NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + SY L I+ + + N N VRIM++H +KGLE PVV L T Sbjct: 805 YAKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGT 864 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 G K + L P + + + + + ++ T E R+LYV Sbjct: 865 GKNFNMTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYV 924 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERV 695 +TRA ++LII N ++ + +T+ D + + + Sbjct: 925 ALTRAREKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDA 984 Query: 696 KKIKLTN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + +K +W W+ +E +E ++ + S Sbjct: 985 VSFREELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESN 1044 Query: 747 IKNDI--------------NEPYILNPSTID------------------TKGKTNLESLL 774 K +I + P L+ S + K Sbjct: 1045 YKEEIYKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEK 1104 Query: 775 SDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831 RG IIH +Q + E K I + + + N I + Sbjct: 1105 KKISPSERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVINPYK-ILKF 1163 Query: 832 LENPMMTTAM-SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNI 878 + + S + E+ S +I + +II G ID + + Sbjct: 1164 CRGELGKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGL 1223 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + +YKT + +IE I + Q+ YE+ L K++ +Y+ Sbjct: 1224 VLLDYKTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269 >gi|153930858|ref|YP_001382829.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 19397] gi|153935206|ref|YP_001386396.1| recombination helicase AddA [Clostridium botulinum A str. Hall] gi|251764508|sp|A7FPG0|ADDA_CLOB1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152926902|gb|ABS32402.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC 19397] gi|152931120|gb|ABS36619.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. Hall] Length = 1279 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 157/949 (16%), Positives = 308/949 (32%), Gaps = 150/949 (15%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKI 173 ++ S A L + YE K++ ++DF D+ +L + + I Sbjct: 331 LYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALDY 390 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRT 215 ++ +LIDE QD++L+Q ++ ++ + Sbjct: 391 RKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPQICLDIPN 450 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ L + G K ++L +FRS +++ V+ Sbjct: 451 RFMVGDVKQSIYRFRQAKPEIFLDKYNEYS---EEEGTKNRKVKLFKNFRSRKEVINGVN 507 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 +F + D T + ++ ++ D Sbjct: 508 YLFKQIMSKTIGELDYTEEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDE 567 Query: 336 LPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + + R +A I ++G + G+ R +Q +DI++L+R + Sbjct: 568 EEALDNIQLEGRLVAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAP 627 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 I I V + D IK +++L + I + D+ + +L+SP+ +F Sbjct: 628 I---FVEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASF 684 Query: 449 SEDDIFKIC------------------TQRHETETVYEYIQKFANCGISKFQH------- 483 ++D++ I + + ++ Y + + N + Sbjct: 685 TDDELIDIRMVNKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKN 744 Query: 484 ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538 I+ + + +F + + + G + L + Sbjct: 745 KICSFIEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQ 804 Query: 539 NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + SY L I+ + + N N VRIM++H +KGLE PVV L T Sbjct: 805 YAKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGT 864 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 G K + L P + + + + + ++ T E R+LYV Sbjct: 865 GKNFNMTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYV 924 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERV 695 +TRA ++LII N ++ + +T+ D + + + Sbjct: 925 ALTRAREKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDA 984 Query: 696 KKIKLTN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + +K +W W+ +E +E ++ + S Sbjct: 985 VSFREELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESN 1044 Query: 747 IKNDI--------------NEPYILNPSTID------------------TKGKTNLESLL 774 K +I + P L+ S + K Sbjct: 1045 YKEEIYKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEK 1104 Query: 775 SDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831 RG IIH +Q + E K I + + + + I + Sbjct: 1105 KKISPSERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVISPYK-ILKF 1163 Query: 832 LENPMMTTAM-SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNI 878 + + S + E+ S +I + +II G ID + + Sbjct: 1164 CRGELGKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGL 1223 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + +YKT + +IE I + Q+ YE+ L K++ +Y+ Sbjct: 1224 VLLDYKTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269 >gi|293554030|ref|ZP_06674630.1| recombination helicase AddA [Enterococcus faecium E1039] gi|291601812|gb|EFF32064.1| recombination helicase AddA [Enterococcus faecium E1039] Length = 1240 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 161/1001 (16%), Positives = 327/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +EE ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ W+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDVWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ KDI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSTFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658 Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + V Y N ++K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVLAYQASNENELVAKLEHFGKQLEHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704 + + + + + ++K + Sbjct: 899 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QSIIEQRQLLAEKELVNLDQQMKEDETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + + + + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S + + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238 >gi|329576396|gb|EGG57909.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1467] Length = 1264 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKHFLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|257085626|ref|ZP_05579987.1| UvrD/REP helicase [Enterococcus faecalis Fly1] gi|256993656|gb|EEU80958.1| UvrD/REP helicase [Enterococcus faecalis Fly1] Length = 1264 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 158/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWQASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I E + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKE-ASYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKNHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I T P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I E + + E S I + D++I G ID Sbjct: 1130 EQIVAFFETALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|256762121|ref|ZP_05502701.1| exonuclease RexA [Enterococcus faecalis T3] gi|257086468|ref|ZP_05580829.1| UvrD/REP helicase [Enterococcus faecalis D6] gi|256683372|gb|EEU23067.1| exonuclease RexA [Enterococcus faecalis T3] gi|256994498|gb|EEU81800.1| UvrD/REP helicase [Enterococcus faecalis D6] gi|315028070|gb|EFT40002.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2137] Length = 1264 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWQASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVSQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I T P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|300859922|ref|ZP_07106010.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11] gi|300850740|gb|EFK78489.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11] Length = 1264 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 160/965 (16%), Positives = 302/965 (31%), Gaps = 140/965 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHR--SSRIGQVGTVQLWEQVVSQH 318 +FRS D+L + VFS + + ++ D + + H + +L Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKD 375 +S P+ +S + + A I +I + + + K R I +D Sbjct: 538 ESVGFPELQSPELLIEDKTEGELYVT-----ALKIRELIDQNFLIYDKKLKTDRPITYQD 592 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I++L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 593 IVLLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDI 648 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIK 486 +L+SP+ E+++ I ET + YE F K + Sbjct: 649 PLAAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAE 707 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS 545 + + A+ I G + L ++ E+ ++ Sbjct: 708 SLEKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFR 767 Query: 546 SLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 768 GLFQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSD 827 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ +L + + + + E R LYV +TRA + Sbjct: 828 LNERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQK 887 Query: 662 -------------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN----- 691 L++ + ++ +V + Sbjct: 888 LFLVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQE 947 Query: 692 -----------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 I+ N I E+ + ++ Sbjct: 948 VVVSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLAR 1007 Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTN------------------------------- 769 P + + S I Sbjct: 1008 LSFNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDL 1067 Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + G H LLQ+I P ++ + +N + PA K Sbjct: 1068 SKPKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKM 1127 Query: 824 LLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQI 871 L I + + + E S I + D++I G ID Sbjct: 1128 NLEQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGY 1187 Query: 872 SISQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1188 IELDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLN 1247 Query: 929 EPKVF 933 + Sbjct: 1248 GGVII 1252 >gi|256958610|ref|ZP_05562781.1| UvrD/REP helicase [Enterococcus faecalis DS5] gi|256949106|gb|EEU65738.1| UvrD/REP helicase [Enterococcus faecalis DS5] Length = 1264 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 163/1033 (15%), Positives = 317/1033 (30%), Gaps = 149/1033 (14%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 + +W L + +++ L+ A L + F S+ Sbjct: 253 LQKIWYLAQNEKEQTKQFLQFLER----NDLESAYNLTELLS-------FDRYSTVR--A 299 Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 + +++ +++ LKK + + + K Sbjct: 300 EELKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEA 359 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQ 192 Y K+ ++DF DL T +L K W + ++ + +L+DE QD + +Q Sbjct: 360 YGAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQ 419 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ L LF VGD KQSIYSF A+P + + G Sbjct: 420 ESILYWLRRPLSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQG 467 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ I L +FRS D+L + VFS + + ++ D + + H + + Sbjct: 468 KEGKRIILAENFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYST 527 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--- 367 + + ++ E + + + A I +I + + + K Sbjct: 528 ELLIYEKKATESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKT 584 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R I +DI++L +K+ I + + L+ I V ND I+ ++AL + Sbjct: 585 DRPITYQDIVLLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQL 640 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------I 478 I + D+ +L+SP+ E+++ I ET + YE F Sbjct: 641 IDNPYQDIPLAAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQ 699 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537 K + + + A+ + I G + L ++ Sbjct: 700 EKTIRFAESLEKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAA 759 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDT 593 E+ ++ L + + +E+ K + N VR+MT+H +KGLE PVVF++D Sbjct: 760 AYEKTTFRGLFQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDM 819 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + ++ +L + + + + E R LYV Sbjct: 820 TKEFNVSDLNERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYV 879 Query: 654 GMTRASDQ-------------------------LIICKHSNTSNEKKSNQRTWYDMVYDS 688 +TRA + L++ + ++ +V Sbjct: 880 ALTRAEQKLFLVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQ 939 Query: 689 FHN----------------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + I+ N I E+ + Sbjct: 940 KADEYQQEVVVSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSAD 999 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----------------------- 769 ++ P + + S I Sbjct: 1000 KINRGLARLSFNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIV 1059 Query: 770 ------------LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKL 815 + G H LLQ+I P ++ + +N + Sbjct: 1060 NRMIEGDLSKPKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLI 1119 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDII 863 PA K L I + + + E S I + D++ Sbjct: 1120 LPAIAEKMNLEQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLL 1179 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 I G ID +++YKT H PQ I I + Q+++Y + L+++ + Sbjct: 1180 IHGIIDGYIELDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVS 1239 Query: 921 VCLLIYVSEPKVF 933 LI ++ + Sbjct: 1240 HVYLILLNGGVII 1252 >gi|327534744|gb|AEA93578.1| ATP-dependent nuclease subunit A [Enterococcus faecalis OG1RF] Length = 1271 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 317 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 377 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 437 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 485 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 545 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 602 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 658 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 717 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 777 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 837 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 897 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 957 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1197 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256 Query: 931 KVF 933 + Sbjct: 1257 VII 1259 >gi|312899588|ref|ZP_07758914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470] gi|311293267|gb|EFQ71823.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470] Length = 1264 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWQASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I T P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|256962291|ref|ZP_05566462.1| UvrD/REP helicase [Enterococcus faecalis Merz96] gi|293383320|ref|ZP_06629235.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712] gi|293387523|ref|ZP_06632072.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613] gi|312905827|ref|ZP_07764847.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512] gi|312909118|ref|ZP_07767977.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516] gi|256952787|gb|EEU69419.1| UvrD/REP helicase [Enterococcus faecalis Merz96] gi|291079343|gb|EFE16707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712] gi|291083033|gb|EFE19996.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613] gi|310628166|gb|EFQ11449.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512] gi|311290542|gb|EFQ69098.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516] Length = 1264 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 299/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GYGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDVQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|29375689|ref|NP_814843.1| exonuclease RexA [Enterococcus faecalis V583] gi|81437087|sp|Q836J8|ADDA_ENTFA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|29343150|gb|AAO80913.1| exonuclease RexA [Enterococcus faecalis V583] Length = 1264 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|229550393|ref|ZP_04439118.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis ATCC 29200] gi|229304515|gb|EEN70511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis ATCC 29200] gi|315156546|gb|EFU00563.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0043] gi|315158289|gb|EFU02306.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0312] Length = 1271 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 317 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 377 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 437 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 485 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 545 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 602 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 658 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 717 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 777 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 837 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 897 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 957 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1197 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256 Query: 931 KVF 933 + Sbjct: 1257 VII 1259 >gi|255973164|ref|ZP_05423750.1| UvrD/REP helicase [Enterococcus faecalis T1] gi|257422970|ref|ZP_05599960.1| exonuclease rexA [Enterococcus faecalis X98] gi|312951365|ref|ZP_07770263.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102] gi|255964182|gb|EET96658.1| UvrD/REP helicase [Enterococcus faecalis T1] gi|257164794|gb|EEU94754.1| exonuclease rexA [Enterococcus faecalis X98] gi|310630625|gb|EFQ13908.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102] Length = 1264 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|315573705|gb|EFU85896.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309B] gi|315582680|gb|EFU94871.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309A] Length = 1264 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|315148450|gb|EFT92466.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4244] Length = 1264 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWQASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGEEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|227552897|ref|ZP_03982946.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis HH22] gi|227177969|gb|EEI58941.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis HH22] Length = 1264 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 303/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K +R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTERPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|239636506|ref|ZP_04677508.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603] gi|239597861|gb|EEQ80356.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603] Length = 1220 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 158/944 (16%), Positives = 311/944 (32%), Gaps = 130/944 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + K DL K+K + + + + K + + + K+ V Sbjct: 303 KASYDKYKDLINKVKNDYFSRTPEDLKRDMQLLAPRVRYLSEIVKDVIHDFSKHKRSRNV 362 Query: 147 LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 LDF D +L D + I Q + IL+DE QDT+ +Q +++ + Sbjct: 363 LDFADYEHFALQILTNEDGTPSAIADMYRQHFSEILVDEYQDTNRVQEKILSCI------ 416 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 K S LF VGD KQSIY F A+P + + NAG I+L +FR Sbjct: 417 -KTGDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFNVDGQNAG---MRIDLSQNFR 472 Query: 266 STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 S ++L+ + +F E ++ D+ + + + V+L V + ++ Sbjct: 473 SRKEVLSTTNYLFRHMMDEAVGEITYDNAAQLYYGAPFDEVDHNVELRTLVEASSEN--- 529 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381 + + A I + +++ ++ R KDI++L R Sbjct: 530 -------------SKLTGTEQEANYIVEQVKDILEHRKVYDMKTNTYRPATYKDIVILER 576 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + D I N R + ++ +++ R + + D+ V ++ Sbjct: 577 SYGQARN----LQQAFKDNDIPFHVNSREGYFEQTEVRLILSFLRTVDNPLQDIYLVGLM 632 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIA 495 +S ++ F+ED++ I + Y+ IQ++ ++ K + + I + Sbjct: 633 RSVIYQFTEDELANIRVFSPNDDYFYQSIQQYIKNDMANKKLVTKLKRFLADIQHYQDYS 692 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 Q + Q F G L N T+ E +S+ L + I + Sbjct: 693 QRYPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKTIEFENSSFRGLYQFIRFI 752 Query: 555 EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ K N N VR+MT+H++KGLE P V + + +++ + Sbjct: 753 DELIDRGKDFGEENIVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKRFNKNDLSRQVVLN 812 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + +K E RL+YV +TRA +QLI+ Sbjct: 813 QKYGLGMDYFDVNEDIAYPSLSSVAYKAINEKEMISEEMRLIYVALTRAKEQLILIGRVK 872 Query: 670 TSNE-----------------KKSNQRTWYDMV--------------------------- 685 E ++ T + M+ Sbjct: 873 DEKELGKLERLPISGNHLAVNERLTASTPFTMIYSILAKYQSSSITNDQKFESDIEQLDS 932 Query: 686 ---YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + + I +++ E E + + + ++L E K Sbjct: 933 NVKPRVNLYVDNFEDISTETVVSESEIRTVEDIERYQSGNDDIKAKIKEKLTFEYLYQKD 992 Query: 743 LFSPIKNDINEPYILNPST---------------IDTKGKTNLESLLSDNQTFNRGLIIH 787 + P K ++E + + T + S + G ++H Sbjct: 993 IEKPSKQSVSELKRQLETEESGTNYDRVRQYRIGVSTYERPKFLSQQGKRKANEVGTLMH 1052 Query: 788 KLLQVIFT----LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-S 842 ++Q + L E + +I +N AKE I +++ + + Sbjct: 1053 TVMQHLPFKKDRLTETELDEYIDLLVERNIIESDAKE-DIRFNEIMTFIQSDLYMNIACA 1111 Query: 843 CDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQ 891 + E+ ++ + + II G ID I +S+ + +YKT Sbjct: 1112 DRVFRELPFVVNQAKVDQLELVDEGVSIIQGMIDLIYVSEGQYYFVDYKTDAFNRRRGLT 1171 Query: 892 EIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + E + + Q+ Y L+ K + L + + Sbjct: 1172 DEEIGQQLKDKYQIQMKYYRNTLETILQTK-VKGYLYFFKFGML 1214 >gi|153938269|ref|YP_001389808.1| recombination helicase AddA [Clostridium botulinum F str. Langeland] gi|251764514|sp|A7GAJ8|ADDA_CLOBL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152934165|gb|ABS39663.1| recombination helicase AddA [Clostridium botulinum F str. Langeland] gi|295317895|gb|ADF98272.1| recombination helicase AddA [Clostridium botulinum F str. 230613] Length = 1279 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 155/949 (16%), Positives = 308/949 (32%), Gaps = 150/949 (15%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKI 173 ++ S A L + YE K++ ++DF D+ +L + + I Sbjct: 331 LYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSDGHIIPSDIALNY 390 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRT 215 ++ +LIDE QD++L+Q ++ ++ + Sbjct: 391 RKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLIFNEEEINLEEPQIGLDIPN 450 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ L + +K ++L +FRS +++ V+ Sbjct: 451 RFMVGDVKQSIYRFRQAKPEIFLDKYNEYN---EEEDRKNRKVKLFKNFRSREEVINGVN 507 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 +F + D T + ++ ++ D Sbjct: 508 YLFKQIMSKTIGELDYTEEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDE 567 Query: 336 LPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + + R +A I ++G + G+ R +Q +DI++L+R + Sbjct: 568 EEALDNIQLEGRLVAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAP 627 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 + I V + D IK +++L + I + D+ + +L+SP+ +F Sbjct: 628 V---FVEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASF 684 Query: 449 SEDDIFKIC------------------TQRHETETVYEYIQKFANCGISKFQH------- 483 ++D++ I + + ++ Y + + N + Sbjct: 685 TDDELIDIRMINKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKN 744 Query: 484 ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538 I+ + + +F + + + G + L + Sbjct: 745 KICSFIEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQ 804 Query: 539 NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + SY L I+ + + N N VRIM++H +KGLE PVV L T Sbjct: 805 YAKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGT 864 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 G K + L P + + + + + ++ T E R+LYV Sbjct: 865 GKNFNMTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYV 924 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERV 695 +TRA ++LII N ++ + +T+ D + + + Sbjct: 925 ALTRAREKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDA 984 Query: 696 KKIKLTN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + +K +W W+ +E +E ++ + S Sbjct: 985 VSFREELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESN 1044 Query: 747 IKNDI--------------NEPYILNPSTID------------------TKGKTNLESLL 774 K +I + P L+ S + K Sbjct: 1045 YKEEIYKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEK 1104 Query: 775 SDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831 RG IIH +Q + E K I + + + + I + Sbjct: 1105 KKISPSERGTIIHLFMQHLDLKKAESEEDIKEQINRLIEREFITYEQSKVISPYK-ILKF 1163 Query: 832 LENPMMTTAM-SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNI 878 + + S + E+ S +I + +II G ID + + Sbjct: 1164 CRGELGKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGL 1223 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + +YKT + +IE I + Q+ YE+ L K++ +Y+ Sbjct: 1224 VLLDYKTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269 >gi|307268773|ref|ZP_07550141.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248] gi|306514901|gb|EFM83448.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248] Length = 1264 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|322387878|ref|ZP_08061485.1| exonuclease RexA [Streptococcus infantis ATCC 700779] gi|321141151|gb|EFX36649.1| exonuclease RexA [Streptococcus infantis ATCC 700779] Length = 1216 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 159/1020 (15%), Positives = 336/1020 (32%), Gaps = 140/1020 (13%) Query: 13 YELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + I + LW L F + + + + + + +L Sbjct: 236 AQDIQQILWELESFFRYHLENDAKEFGKAAYLEAVQQVLDEIGALTNESTFNQYQEVLER 295 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFK-STLAS 126 K + + + +LKE + + ++ I + D+ K + S Sbjct: 296 VVCISKDKGGRALTNASRKAELLELKEAYNQKRKDKFEKLIALNDQITLLKFQEDYHQES 355 Query: 127 LTLA-------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 LA Y + K++ +F D+ T ++L+ +R + + + Sbjct: 356 WDLAMTFQVFMSDFVDAYRKRKREENAFEFADISHYTIEILENFP---QVRKEYQERFHE 412 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ Sbjct: 413 VMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNE 461 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + ++ +I L +FRS++++L + VF L ++ I + Sbjct: 462 KFHSFAQD----SKEGQLILLKENFRSSSEVLNATNDVFKH------LMDEEVGEISYDG 511 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 G L ++ + + S + + + R + I ++ Sbjct: 512 MHQLVFGNTDLQPDPENKAEVLLYDKDVDGDSKEEEEFSSNKLTGEMRMVIKEILHLHND 571 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAI 418 + + DI +L R + Y I V + L + Sbjct: 572 ---------KGVPFNDIALLTASRSRNDHVLLALSE----YGIPVKTDGALNNYLQSLEV 618 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG- 477 + ++ R I + D + V ++KSP+F+F ED++ ++ Q E + + +K N Sbjct: 619 QVMLDTLRVIHNPLQDFALVALMKSPMFSFDEDELARLSLQNSEDKVQENFYEKLVNAQA 678 Query: 478 -------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 K ++ ++ ++ S +D I + + G Sbjct: 679 KTSIQKDLIKSELHKKLNLFLETVNAWRLFSKTHSLYDLIWKIYSERFYYDYVGALPNGQ 738 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVH 578 L + E++++ L I+ ++Q K ++ + V +M++H Sbjct: 739 ARQANLYALALRADQFEKSNFKGLSRFITMIDQV-LEAKHDLASVTVAPPKDAVELMSIH 797 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSK 626 +KGLE P VF+++ Q + ++ + + Sbjct: 798 KSKGLEFPYVFILNIDQQFNKQDSMSEVILSRKNGLGLKYVARVATNAKEEYLPSTIKLS 857 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----------- 675 + S + L+ ++ E RLLYV MTRA +L + + + Sbjct: 858 IPSLTYSQNEEELQLASYSELMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPTNGQGLL 917 Query: 676 --------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW----STHHPENTP 723 N + W +Y +F ++ ++ E + Sbjct: 918 TRQTRLDAQNFQDWIWAIYQAFSKEDLHFSVRFEGEEQLTEEAIGKLENKSQLQDLSQAS 977 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID-------------------- 763 + +TI++ + K + + IN P + PS I Sbjct: 978 NRQSDTIREALQMLKEVEVYNEIHRAAINLPSVQTPSQIKKFYEPVMDMEGVVVAGQSRP 1037 Query: 764 ----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + + S G H+L+Q I + + + A Sbjct: 1038 KETTLQFELPDFSKTEKVTGAEIGSATHELMQRINLCHKPSIETLTEALEQVQASSAVKD 1097 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIIISGRIDQISISQ 875 + L I + + ++ Y E S + + ++D ++ G +D + + Sbjct: 1098 KVN--LEKILSFFDTDLGQEILANQDKLYREQPFSMLKRDDKSQEDFVVRGILDGYLVYE 1155 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + + + QL +Y + L SY + LI + ++ + Sbjct: 1156 DKIILFDYKTDRY--DYASQLIERYRGQLELYAEALSRSYQIDQVEKYLILL-GKEMVEV 1212 >gi|315170964|gb|EFU14981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1342] Length = 1271 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 317 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEAAPIVQEMAHVGKQFMEAYGAEKRLKNL 376 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 377 VDFNDLEHYTLAILAKNQADGWHASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 436 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ + I L Sbjct: 437 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGNRIILAE 484 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 485 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 545 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 602 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 658 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 717 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 777 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 837 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 897 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 957 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1197 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256 Query: 931 KVF 933 + Sbjct: 1257 VII 1259 >gi|315165524|gb|EFU09541.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1302] Length = 1271 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 317 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 377 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 437 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 485 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 545 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 602 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 658 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 717 EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 777 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 837 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 897 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 957 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1197 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256 Query: 931 KVF 933 + Sbjct: 1257 VII 1259 >gi|307288582|ref|ZP_07568566.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109] gi|306500489|gb|EFM69822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109] Length = 1264 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|315144626|gb|EFT88642.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2141] Length = 1271 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 159/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 317 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 377 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 437 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 485 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 545 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 602 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 658 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 717 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 777 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 837 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 897 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 957 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I T P ++ + +N + PA K L Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L++S + LI ++ Sbjct: 1197 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGG 1256 Query: 931 KVF 933 + Sbjct: 1257 VII 1259 >gi|295112697|emb|CBL31334.1| DNA helicase/exodeoxyribonuclease V, subunit A [Enterococcus sp. 7L76] gi|315160943|gb|EFU04960.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0645] Length = 1264 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 159/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I T P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L++S + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|257418942|ref|ZP_05595936.1| UvrD/REP helicase [Enterococcus faecalis T11] gi|257160770|gb|EEU90730.1| UvrD/REP helicase [Enterococcus faecalis T11] Length = 1264 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKKFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|170756184|ref|YP_001780091.1| recombination helicase AddA [Clostridium botulinum B1 str. Okra] gi|251764513|sp|B1IEN0|ADDA_CLOBK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169121396|gb|ACA45232.1| ATP-dependent nuclease subunit A [Clostridium botulinum B1 str. Okra] Length = 1279 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 155/949 (16%), Positives = 309/949 (32%), Gaps = 150/949 (15%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKI 173 ++ S A L + YE K++ ++DF D+ +L + + I Sbjct: 331 LYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSDGHIIPSDIALNY 390 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRT 215 ++ +LIDE QD++L+Q ++ ++ + Sbjct: 391 RKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLIFNEKEINLEEPQIGLDIPN 450 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ L + +K ++L +FRS +++ V+ Sbjct: 451 RFMVGDVKQSIYRFRQAKPEIFLDKYNEY---NEEEDRKNRKVKLFKNFRSREEVINGVN 507 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 +F + D T + ++ ++ D Sbjct: 508 YLFKQIMSKTIGELDYTEEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDE 567 Query: 336 LPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + + R +A I ++G + G+ R +Q +DI++L+R + Sbjct: 568 EEALDNIQLEGRLVAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAP 627 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 + I V + D IK +++L + I + D+ + +L+SP+ +F Sbjct: 628 V---FVEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASF 684 Query: 449 SEDDIFKIC------------------TQRHETETVYEYIQKFANCGISKFQH------- 483 ++D++ I + + ++ Y + + N + Sbjct: 685 TDDELIDIRMVNKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKN 744 Query: 484 ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538 I+ + + +F + + + G + L + Sbjct: 745 KICSFIEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQ 804 Query: 539 NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + SY L I+ + + N N VRIM++H +KGLE PVV L T Sbjct: 805 YAKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGT 864 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 G K + L P + + + + + ++ T E R+LYV Sbjct: 865 GKNFNMTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYV 924 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERV 695 +TRA ++LII N ++ + +T+ D + + + Sbjct: 925 ALTRAREKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDA 984 Query: 696 KKIKLTN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + +K +W W+ +E +E ++ + S Sbjct: 985 VSFREELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMSLEESN 1044 Query: 747 IKNDI--------------NEPYILNPSTID------------------TKGKTNLESLL 774 K +I + P L+ S + K Sbjct: 1045 YKEEIYKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEK 1104 Query: 775 SDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831 RG IIH +Q + E K I + + + + I + Sbjct: 1105 KKISPSERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVISPYK-ILKF 1163 Query: 832 LENPMMTTAM-SCDSYSEVSVSGKINCPK------------KDIIISGRIDQISISQQNI 878 + + S + E+ S +I + + +II G ID + + Sbjct: 1164 CRGELGKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKNEKLIIQGVIDCYFEEEDGL 1223 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + +YKT + +IE I + Q+ YE+ L K++ +Y+ Sbjct: 1224 VLLDYKTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269 >gi|295091233|emb|CBK77340.1| recombination helicase AddA, Firmicutes type [Clostridium cf. saccharolyticum K10] Length = 1273 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 165/1089 (15%), Positives = 336/1089 (30%), Gaps = 170/1089 (15%) Query: 2 KNRFGLSLNESYEL------IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TIL 47 + + E+ + + +D+ + + L E P + L Sbjct: 196 RRELSDTSVEALDRTGWMQFLLEDVRRQASEWAGQLQEAARLCSEEDGPGAYLPMILSDL 255 Query: 48 KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE- 106 A+ L++ S + S L + + + +K + ++++KK+ ++ Sbjct: 256 SNAEKLREVSGYDSFVQAASGFEFPKLAAVRGKH-SPVNPDKKEKVSECRKRIKKAVEKM 314 Query: 107 ----FIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + ++ L LTLA+ +E K++ ++DF DL +L Sbjct: 315 KGQFLFASEEEILADLAGSSEAVLMLLTLAEDFAGRFEAKKRERNLVDFNDLEHLALQVL 374 Query: 161 KKRDV------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 + + + + + + IL+DE QD++L+Q +IR+++ + Sbjct: 375 YQEEKEGGEHRPSEAADLLAGQFDEILVDEYQDSNLVQEALIRAVSRE-------RFGTP 427 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 +F VGD KQSIY F A P+ L + K + IEL +FRS +L Sbjct: 428 NVFMVGDVKQSIYKFRLARPELFLEKYHSYTKE----DSLYQKIELHQNFRSRRQVLEST 483 Query: 275 DKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332 + VF EN +S T + +S E +S D+ + Sbjct: 484 NDVFYRIMTENLGSISYTEETALHPGASFEPLPQERGRKEAELSGSDAGQTAGEAGEDGP 543 Query: 333 -------------------------FDSLPQESSASILARRIAYTISNMIGTDT-----I 362 D + + + AR I I + + Sbjct: 544 LEEQRDPFSTEILLINTKDSVLEELDDDISDYTRQELEARMIGKRIRELTDPERGCPVWD 603 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 G+ R + +DI++L+R I + + ++ ++ Sbjct: 604 KELGRYRKAEYRDIVILLRSVSGWA---ESFVETLAHQGIPAFAESKTGYFTTIEVETML 660 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------------- 468 + + D+ +LK+P F ++ ++ +I + + + Sbjct: 661 NFLAVLDNPMQDIPLTAVLKAPFFGLTDRELAEIAARFKHSANRGQDRGMYGAICLYLGE 720 Query: 469 -----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 + + K + +L A + H+ I Sbjct: 721 SDQAGETMQSSAEGEREPEILEKLASFFRVTEQLRREAVYLPIHELIYRIFDVTGYYDYV 780 Query: 518 -ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNE 571 G LD + E SY + I +E+ + N Sbjct: 781 SAMPAGETRRANLDMLVEKAAAYEATSYRGVFHFIKYIEKLKKYNTDFGEASTAAEGGNT 840 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 VRIM++H +KGLE P+VF+ G Q K+ I + K+ Sbjct: 841 VRIMSIHKSKGLEFPIVFVAAMGKQFNRQDTRGKILIDSRFGIGTDYLNAETRLKAPTLK 900 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ------------- 678 + L + + E R+LYV MTRA ++LI+ K Sbjct: 901 KNVLKRRMDLENMGEELRVLYVAMTRAKEKLILTASDRNLEAKLEKWKELLDTGERGLAF 960 Query: 679 ------RTWYDMVYDSFHND-------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 ++ D V + E + K L+ I + + E Sbjct: 961 TLLSLAGSYLDWVLMAMEGGVCRIWMREVMAKELLSEEIGEQVRRKVTKDMLLWPDREEE 1020 Query: 726 REETIK----------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 EE+ + + P ++++ ++ S I +G L + Sbjct: 1021 GEESPASQIFGLMGDEEYRKRLEESFSFQYPWEDELRLNTKMSVSDIKKEGDEELFEESA 1080 Query: 776 DN--------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 Q RG H+ ++++ K+ + + + Sbjct: 1081 FLPTIPSFLSGEEKEVQGARRGTAYHRAMELLSFHEIRKKSDIKEQLDRLVEEGKMTADS 1140 Query: 822 KNLLLS--ITRLLENPMMTTAMSCDS----YSEVSVSGKINCP-------KKDIIISGRI 868 + L+ I + + + E I + +++ G I Sbjct: 1141 RELVRESVIWPFFSSDLGKRMAAAQREGRLKKESQFVIGIPARQMGDFNSDELVLVQGII 1200 Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 D + + +YKT + ++ E + + QL Y + L + ++ Sbjct: 1201 DAFFEEDGELVLVDYKTDYV--EKEETLRERYGIQLDYYRRALMQMEKKRVKETVIYSFR 1258 Query: 929 EPKVFIIPQ 937 +V + P+ Sbjct: 1259 LGEVRLQPE 1267 >gi|257078036|ref|ZP_05572397.1| UvrD/REP helicase [Enterococcus faecalis JH1] gi|294780984|ref|ZP_06746336.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1] gi|256986066|gb|EEU73368.1| UvrD/REP helicase [Enterococcus faecalis JH1] gi|294451930|gb|EFG20380.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1] gi|315031591|gb|EFT43523.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0017] gi|315034967|gb|EFT46899.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0027] gi|323480352|gb|ADX79791.1| recombination helicase AddA [Enterococcus faecalis 62] Length = 1264 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|257884720|ref|ZP_05664373.1| UvrD/REP helicase [Enterococcus faecium 1,231,501] gi|257820558|gb|EEV47706.1| UvrD/REP helicase [Enterococcus faecium 1,231,501] Length = 1240 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 160/1001 (15%), Positives = 326/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +EE ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ W+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDVWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ KDI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658 Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + V Y + +K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVLAYQASNEDELAAKLEHFGKQLDHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704 + + + + + ++K + Sbjct: 899 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + + + + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S + + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDNPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238 >gi|257415727|ref|ZP_05592721.1| UvrD/REP helicase [Enterococcus faecalis AR01/DG] gi|257157555|gb|EEU87515.1| UvrD/REP helicase [Enterococcus faecalis ARO1/DG] Length = 1264 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 299/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWQASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] Length = 1080 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 164/975 (16%), Positives = 313/975 (32%), Gaps = 115/975 (11%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + E+ E P L+ A L+ Sbjct: 191 RTALERCQTEALEAFLSRAAPSIETLRD-------LAARYPGERDPAGAY-LRAVEPCLA 242 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQE---------INKKSPDLKEKLKKSQDEFIKIRD 112 E + L++ +KN+ ++ + L++ L D Sbjct: 243 GEIAVAELAAVH--DNSGFRKNMGQKKNWEGDDLDNLRAAYGVLRQCLTDHAGACSLTLD 300 Query: 113 RF--NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 T + K E K++ LDF+DL+ T+ L + R Sbjct: 301 AADPFTRATLDFLRDLGVVFKAFLDSVEAEKRRMNALDFDDLVNRTHRLFRDRGDIVETH 360 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 ++ IL+DE QDT +Q +IR+L D LF VGD KQSIY F Sbjct: 361 FR--SRFRFILVDEFQDTDPVQIAIIRTLLGD----------SANLFVVGDPKQSIYLFR 408 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 A+ + + + ++ + L ++FRST +++ + VFS G + Sbjct: 409 EADVTQFSHTRDLIERDLGG-----ETVALDVNFRSTPEVVGFTNAVFSALMAEAGRPWE 463 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 H + R G+V+L + + A A Sbjct: 464 FLYEPLH-AFRRDDAGSVELLLCQKIRDRAAG-------------------RRAEAEMAA 503 Query: 351 YTISNMIGTD--TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I +++ + +G+ R D+ VL+ +R + + Y + + Sbjct: 504 RKIRSLVERGEKRVSRDGEVRPAGYGDVAVLLERRTNLAYYEWAL----ARYGVPYHVHA 559 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 + + DL + RF+ + DD + +L+SP F FS+ +F I R +++E Sbjct: 560 GLGFYERQEVYDLYNILRFLANNLDDAALYGVLRSPYFGFSDARLFHI--ARAPGASLWE 617 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVID 527 +Q A + + E + +++ P I+ F G + Sbjct: 618 RLQAAAEPAAA-------TLREWLSLSRRLPPARLLRRIVDESGIFVVFGGMAGGEQAAA 670 Query: 528 VLDEFLNFTLRNEQNSYSSL-QELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLES 585 +++ + + ++ + EL ++ A+ + V IMTVH AKGLE Sbjct: 671 NVEKLIALARDADCSTLAGFVAELGRSIDAGDREGDAPLDLASADSVSIMTVHAAKGLEF 730 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVV + D S + L P + ++ L ++ + Sbjct: 731 PVVVVPDLAETPRSGGGTIMVEDGLLLGVSIPNPANDHER-EETPVLRLLKDEYRQKEEA 789 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV +TRA D LI+C + + + + Sbjct: 790 ERKRLFYVAVTRAEDHLILCGEMPVAVPESLRDARTRMAWLAHCLGLCDEVYARGEAVLG 849 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI--KNDINEPYILNPSTID 763 T P P++ +ET+ + P ++ + + + S ++ Sbjct: 850 TLRIPI----TLDPAAIPVDVQETVPVCLPVPDDVPAAPVPAGIPSNGKKERVYSASELE 905 Query: 764 TKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + ES L + RGL++H++ + Y Sbjct: 906 AYLRGPAESRLPVFAAGEDALTRGLVVHEVF------RGRDPAAVLRRY------GLDPA 953 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNI 878 R L +P+M + EV S ++N G ID++ Sbjct: 954 GAVEYQELYVRFLASPLMRGIVRDH--REVPFSARVN----GFAFRGVIDRLVQRVNGTW 1007 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV--FIIP 936 + +YKT + Q+++Y + + L +V + + Sbjct: 1008 MLIDYKTGTPGDAGE------YAIQMAVYHRAAAQILSA-PVTPYLYFVDADRWAEIEVD 1060 Query: 937 QNKLNKAFAEISTKI 951 ++ + + + I Sbjct: 1061 EDLVFAEISRAISGI 1075 >gi|315153691|gb|EFT97707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0031] Length = 1271 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 317 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 377 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 437 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 485 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 545 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 602 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 658 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 717 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 777 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 837 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 897 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGLTLVRHQKADEYQQEVV 956 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 957 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1197 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256 Query: 931 KVF 933 + Sbjct: 1257 VII 1259 >gi|293569779|ref|ZP_06680866.1| recombination helicase AddA [Enterococcus faecium E1071] gi|291587527|gb|EFF19404.1| recombination helicase AddA [Enterococcus faecium E1071] Length = 1240 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 161/1001 (16%), Positives = 327/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +EE ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ AW+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ KDI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658 Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + V Y + +K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLVKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704 + + + + + ++K + Sbjct: 899 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + + + + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S + + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238 >gi|69246355|ref|ZP_00603911.1| UvrD/REP helicase [Enterococcus faecium DO] gi|258616338|ref|ZP_05714108.1| exonuclease RexA [Enterococcus faecium DO] gi|68195308|gb|EAN09759.1| UvrD/REP helicase [Enterococcus faecium DO] Length = 1240 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 160/1001 (15%), Positives = 326/1001 (32%), Gaps = 130/1001 (12%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97 ++ + + +A +EE ++ L + + +K + + + K+ L Sbjct: 259 AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 319 QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ AW+ ++ +++DE QD + +Q ++ L E + Sbjct: 379 QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 432 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 487 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ KDI++L +K+ I Sbjct: 547 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + D I+ +++L + I + D+ +L+SP+ E Sbjct: 603 EIFKTL----DIPLEMKDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658 Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + V Y + +K +H K + +A+ S D I Sbjct: 659 PELASIRLADRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDI 718 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 719 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 779 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 839 TRVLYDTLPFQAIKLVKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704 + + + + + ++K + Sbjct: 899 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 959 QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + + + + K + SI + + ++ + E Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S + + +++I G +D + ++ I+++KT P EI+ Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 1198 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238 >gi|315038484|ref|YP_004032052.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1112] gi|312276617|gb|ADQ59257.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1112] Length = 1205 Score = 358 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 163/985 (16%), Positives = 306/985 (31%), Gaps = 128/985 (12%) Query: 46 ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105 L + + +E+ LL ++ + + +++ + DL++ +++ Sbjct: 253 DQNLQNFLAALDEDKPYDEQRDLLRLCTFNGRY-RKSSKWDEDLLEFYGDLQKLKDEAKS 311 Query: 106 EFIKIRDRFNTYKMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 + F + A L + + K+ ++D+ D+ Sbjct: 312 QVFDTFTAFFATDEKEQVKVMQDGQKIVAAIAQAEIALIERFNKLKRDENLIDYSDMEQL 371 Query: 156 TNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 +L + S R + IL+DE QD + +Q +I+ + Sbjct: 372 AYRILSQDTSSSQMARDFYQSKFKEILVDEYQDINALQENIIQQV---------RQPGKN 422 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 TLF VGD KQSIY F AEP LR+ + I L +FRST + V Sbjct: 423 TLFMVGDVKQSIYGFRQAEPSLFLRKYHDFAQEQNEHE---ERILLSDNFRSTEPVTRTV 479 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + +F+ ++ D + + +V+ + + + + Sbjct: 480 NHLFNSILSSNFGGIDYQKEGQLVFGAKYYPSNLPKASEVIIHKKERGGDENSDKVDFSE 539 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + I + + G+ R ++ DI +L R D Sbjct: 540 I-----------QMVLARIKQLKEEHMQVFDSKSGQMREMKYSDIAILTRSHSD----NL 584 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 I + D + +M + I + + D+ V +L+SPLFNF E Sbjct: 585 EIMQEFAKQDIPLFVTDAENYFQTFELTVIMNYLKIIDNPDQDIPLVTVLRSPLFNFGEK 644 Query: 452 DIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 D+ KI + + + K + + + L A + I Sbjct: 645 DLAKIRIKSKNSSFYSALTSYVGVGDQLSDKCKDFLNQLASLREFATTHRISELIWSIYT 704 Query: 510 AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKR 563 + + G + L+ E + L + I+ + Q Sbjct: 705 RTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFINRMRQSQKDLAQPL 764 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 N VR+MT+H +KGLE P+VF + Q I D G+ + Sbjct: 765 LTKEAGNAVRLMTIHGSKGLEFPIVFYLGMHHQYQLRDLKGDYVI---NADGLGVTLREE 821 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR---T 680 + + + + K+ EE R+LYV +TRA +LI+ + ++K + Sbjct: 822 HYRIDSLVKAMGNITKKRQLLEEEARILYVALTRAKQKLIMVGDIPSFDKKVKDWSNELD 881 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST------------------------ 716 + + + ++ D +A S Sbjct: 882 HEGQLSLADKLAATTPLSFMGPALAFDRRVAMRISDITNSLDQSQPILFVDFSDDAIANN 941 Query: 717 --HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 + + T + E IK+L + + P K+ I S I E+ L Sbjct: 942 AVNEEKETRKDSEPEIKKLTETATKLYQFDYPFKDAIATTAYQAVSEIKKAFNDPDEAEL 1001 Query: 775 SDN-------------------------QTFNRGLIIHKLLQVIF---TLPEHKRKNFIT 806 ++ G H +LQ + + + I Sbjct: 1002 ENSHLLASTNRYLQPIDTKPSFLYQTKFTGAEIGTATHLILQYYDYTGDGSDEQLEQEIQ 1061 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVSG---------K 854 + K A +L + D EV S Sbjct: 1062 HLIEQ--KKLNADIVSSLKKDQIEWFVHSDFAKDFWQRPEDLKREVDFSSLLSARTLFDD 1119 Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKI 910 + P I++ G ID I I +F+YKT H ++ I + QL +YE+ Sbjct: 1120 FSDPNAKILVHGTIDGYFIINNGIILFDYKTDHVDKSHLDEAIELIKEKYTGQLRLYERA 1179 Query: 911 LKDSYPNKSLVCLLIYVSEPKVFII 935 L + K + LI + + + Sbjct: 1180 LNEFSTKKVIGKYLILLDAKQAVEV 1204 >gi|283795557|ref|ZP_06344710.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1] gi|291077226|gb|EFE14590.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1] Length = 1273 Score = 358 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 164/1089 (15%), Positives = 334/1089 (30%), Gaps = 170/1089 (15%) Query: 2 KNRFGLSLNESYEL------IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TIL 47 + + E+ + + +D+ + + L E P + L Sbjct: 196 RRELSDTSVEALDRTGWMQFLLEDVRRQASEWAGQLQEAARLCSEEDGPGAYLPMILSDL 255 Query: 48 KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE- 106 A+ L++ S + S L + + + +K + ++++KK+ ++ Sbjct: 256 SNAEKLREVSGYDSFVQAASGFEFPKLAAVRGKH-SPVNPDKKEKVSECRKRIKKAVEKM 314 Query: 107 ----FIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + ++ L LTLA+ +E K++ ++DF DL +L Sbjct: 315 KGQFLFASEEEILADLAGSSEAVLMLLTLAEDFAGRFEAKKRERNLVDFNDLEHLALQVL 374 Query: 161 KKRDV------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 + + + + + IL+DE QD++L+Q +IR+++ + Sbjct: 375 YQEEKEGGEHRPGEAADLLAGQFDEILVDEYQDSNLVQEALIRAVSRE-------RFGTP 427 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 +F VGD KQSIY F A P+ L + K + IEL +FRS +L Sbjct: 428 NVFMVGDVKQSIYKFRLARPELFLEKYHSYTKE----DSLYQKIELHQNFRSRRQVLEST 483 Query: 275 DKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGT-----VQLWEQVVSQHDSQCNP--- 324 + VF EN +S T + +S +L Q + Sbjct: 484 NDVFYRIMTENLGSISYTEETALHPGASFEPLPQERGRKEAELSGSAAGQTAGEAGEDGP 543 Query: 325 -----------------QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362 + D + + + AR I I + + Sbjct: 544 LEEQRDPFSTEILLINTKDSVLEELDDDISDYTRQELEARMIGKRIRELTDPERGCPVWD 603 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 G+ R + +DI++L+R I + + ++ ++ Sbjct: 604 KELGRYRKAEYRDIVILLRSVSGWA---ESFVETLAHQGIPAFAESKTGYFTTIEVETML 660 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------------- 468 + + D+ +LK+P F ++ ++ +I + + + Sbjct: 661 NFLAVLDNPMQDIPLTAVLKAPFFGLTDRELAEIAARFKHSANRGQDRGMYGAICLYLGE 720 Query: 469 -----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 + + K + +L A + H+ I Sbjct: 721 SDQAGETMQSSAEGEREPEILEKLASFFRVTEQLRREAVYLPIHELIYRIFDVTGYYDYV 780 Query: 518 -ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNE 571 G LD + E SY + I +E+ + N Sbjct: 781 SAMPAGETRRANLDMLVEKAAAYEATSYRGVFHFIKYIEKLKKYNTDFGEASTAAEGGNT 840 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 VRIM++H +KGLE P+VF+ G Q K+ I + K+ Sbjct: 841 VRIMSIHKSKGLEFPIVFVAAMGKQFNRQDTRGKILIDSRFGIGTDYLNAETRLKAPTLK 900 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ------------- 678 + L + + E R+LYV MTRA ++LI+ K Sbjct: 901 KNVLKRRMDLENMGEELRVLYVAMTRAKEKLILTASDRNLEAKLEKWKELLDTGERGLAF 960 Query: 679 ------RTWYDMVYDSFHND-------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 ++ D V + E + K L+ I + + E Sbjct: 961 TLLSLAGSYLDWVLMAMEGGVCRIWMREVMAKELLSEEIGEQVRRKVTKDMLLWPDREEE 1020 Query: 726 REETIK----------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 EE+ + + P ++++ ++ S I +G L + Sbjct: 1021 GEESPASQIFGMLGDEEYRKRLEESFSFQYPWEDELRLNTKMSVSDIKKEGDEELFEESA 1080 Query: 776 DN--------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 Q RG H+ ++++ K+ + + + Sbjct: 1081 FLPTIPSFLSGEEKEVQGARRGTAYHRAMELLSFHEIRKKSDIKEQLDRLVEEGKMTADS 1140 Query: 822 KNLLLS--ITRLLENPMMTTAMSCDS----YSEVSVSGKINCPKKD-------IIISGRI 868 + L+ I + + + E I + +++ G I Sbjct: 1141 RELVRESVIWPFFSSDLGKRMAAAQREGRLKKESQFVIGIPAREMGDFNSDELVLVQGII 1200 Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 D + + +YKT + ++ E + + QL Y + L + ++ Sbjct: 1201 DAFFEEDGELVLVDYKTDYV--EKEETLRERYGIQLDYYRRALMQMEKKRVKETVIYSFR 1258 Query: 929 EPKVFIIPQ 937 +V + P+ Sbjct: 1259 LGEVRLQPE 1267 >gi|315168381|gb|EFU12398.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1341] Length = 1264 Score = 358 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSNVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|256618697|ref|ZP_05475543.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200] gi|257089525|ref|ZP_05583886.1| exonuclease rexA [Enterococcus faecalis CH188] gi|256598224|gb|EEU17400.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200] gi|256998337|gb|EEU84857.1| exonuclease rexA [Enterococcus faecalis CH188] gi|315577474|gb|EFU89665.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0630] Length = 1264 Score = 358 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 159/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGTEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASLYYRKKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I T P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L++S + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|312903646|ref|ZP_07762822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635] gi|310632999|gb|EFQ16282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635] Length = 1264 Score = 358 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 159/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGTEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASLYYRKKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I T P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L++S + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|70726984|ref|YP_253898.1| hypothetical protein SH1983 [Staphylococcus haemolyticus JCSC1435] gi|123659798|sp|Q4L4Y3|ADDA_STAHJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|68447708|dbj|BAE05292.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 1225 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 154/953 (16%), Positives = 319/953 (33%), Gaps = 134/953 (14%) Query: 87 QEINKKSPDLKEKLKK--SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 ++ L ++K + ++ ++ + + K + + E K+ Sbjct: 307 KDFFDDYKKLLSEVKNKYLMRSYEDLKVDMK--RLAPRIQYLVQIVKDIINGFAEKKRSR 364 Query: 145 CVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 VLDF D +L ++ ++ I + + IL+DE QDT+ +Q +I + Sbjct: 365 NVLDFSDYEHFALQILTDQEGNASPIAKEYRSQFEEILVDEYQDTNQVQEAIISKIKR-- 422 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 S LF VGD KQSIY F A+P + + K +G I+L + Sbjct: 423 -----GDESNGNLFMVGDVKQSIYKFRQADPTLFMDKYHRFTKDGDQSGL---RIDLSKN 474 Query: 264 FRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSR-IGQVGTVQLWEQVVSQHDS 320 FRS ++L + +F E + D+ + +++ + ++L + + Sbjct: 475 FRSRKEVLATTNYLFDHMMDEEVGEIEYDADARLYFGATKYSDKSMPLELHALIQDKSSD 534 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILV 378 + + AR IA + +I ++ R KDI++ Sbjct: 535 NDLEK----------------SEQEARYIAEQVKYIIEHKQVYDMKSETYRQATFKDIVI 578 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R K+ + + DY I N + + ++ +++ R + + D+ V Sbjct: 579 LERGLKNARN----LQQVFKDYNIPFHVNSKEGYFEQTEVRLVLSFLRTVDNPLQDIYLV 634 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELI 492 +++S ++ F+ED++ I Q + Y+ I + K +H + I+ Sbjct: 635 GLMRSVIYQFTEDELANIRVQSMNDDYFYQSILHYMKDQEANPLLVEKLEHFMDDINMYQ 694 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELI 551 +Q + Q F G + L N + E +S+ L + I Sbjct: 695 EYSQSHPVYQLIDKFYNDHYVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLYQFI 754 Query: 552 SELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 +++ K N N VR+MTVH++KGLE P V + K + Sbjct: 755 RFIDELIERNKDFGEENVIGPNDNVVRMMTVHSSKGLEFPYVIYSELSKNFNKGDLRKPL 814 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 + + + +K E RL+YV +TRA +QLI+ Sbjct: 815 ILNQKYGLGIDYFDLEQNVTYPSLSSVVIKSITEKELISEEMRLMYVALTRAKEQLILIG 874 Query: 667 HSNTSNE-----------------KKSNQRTWYDMV------YDSFHNDERVKKIKLTNS 703 + K+ + +D++ Y S + K ++ Sbjct: 875 TIDKEEALEKLERLPISGNQIALHKRLSADRPFDLIYSILAKYQSTSLLPEYRFEKSIDN 934 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQ----------------LMDEQKIPKKLFSPI 747 +++ + E +E E+ ++ L + P Sbjct: 935 LDESLRPTVDIKIAQFEELSIEDSESEQESRNISDLEVEGSHDDTLKQQINDQLSFKYPY 994 Query: 748 KNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFNRGL 784 D +P + S + T + + G Sbjct: 995 LKDTEKPSKQSVSELKRQLETEESGTSYERVRQYRIGVSTYERPKFLRENKKRKANEIGT 1054 Query: 785 IIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA- 840 ++H ++Q + + + Y + + K++ ++ + + + T Sbjct: 1055 LMHTVMQHLPFKETRMTETELNDYINELIEKHIIEEDAKKDIQFEAVMNFIRSDLYMTIT 1114 Query: 841 MSCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHV 889 + Y E+ ++ +D+ II G ID I + + +YKT Sbjct: 1115 QADKVYRELPFVVNQARVDEMPESDEDVSIIQGMIDLIFLKDDQYYFVDYKTDAFNKRRG 1174 Query: 890 PQEIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 + E + + Q+ Y+ L+ +K + L + + I ++ Sbjct: 1175 MTDEEVGIQLRDKYKIQMKYYKNTLETILNSK-VYGYLYFFQFGQ-MSIEEDV 1225 >gi|227890027|ref|ZP_04007832.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus johnsonii ATCC 33200] gi|227849471|gb|EEJ59557.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus johnsonii ATCC 33200] Length = 1204 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 162/985 (16%), Positives = 308/985 (31%), Gaps = 130/985 (13%) Query: 50 AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----------DLKEK 99 A L+Q ++ + + + KF + + DL ++ Sbjct: 252 ASRLEQLLNALEDNHAYNEIRANLMNCKFEKNIRKSKKWSEESLETYQESQKLKSDLNDQ 311 Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCVLDFEDLIINT 156 LKK F + ++ + KS T+ L + + K++ ++D+ D+ Sbjct: 312 LKKIFANFFVVEEKEQVNILKKSEKIVKTIVDTEKKLIKRFGQLKREQNLIDYSDMEQFA 371 Query: 157 NDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 +L +A I + ++ N ILIDE QD + +Q +I ++ Sbjct: 372 FSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIAAI---------KKKGQNN 422 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 LF VGD KQSIY F A P L + I L +FRST + V+ Sbjct: 423 LFMVGDIKQSIYGFRQARPDLFLSKYHAY-----GQNDDSEKIILSDNFRSTKRVTKTVN 477 Query: 276 KVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 +F+ N G+ ++ ++ + + ++ + F Sbjct: 478 SLFNPILTANFGGIDYKKEGQLQFGATY---------YPADLPTASEYIFTDKKQTQASF 528 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLIT 390 + + + + I + + + K KR ++ DI ++ R R D Sbjct: 529 EKNFGDEMDFSEIQMVIARIKQLKEENFQVWDRKTQLKRPLEYSDIAIITRTRSD----N 584 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + D + +M R I + + D+ V +L+SPLFNF E Sbjct: 585 LQVMQEFAKADLPLFVTDAQNYFQTFELVMIMNYLRLIDNPQQDIPLVAVLRSPLFNFKE 644 Query: 451 DDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 ++ +I + + K ++ ++ + L A + I Sbjct: 645 PELVQIRVKTRSGNFYNALTNFASVNSDLGQKCKNFLQQLESLRSFAATHRISELIWSIY 704 Query: 509 GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIK 562 + G + L+ E + L + IS +E+ Sbjct: 705 ERTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFIERMRKNQKDLAQP 764 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N V++MT+H +KGLE PVVF++ G + + I D G+ I Sbjct: 765 LLSDKADNAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTI---SKDGLGLTIKE 821 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 + + + S ++ EE R+LYVG+TRA +LI+ + K+ + Sbjct: 822 KDYRIDSLVKSLADVEKRQQMLEEEARILYVGLTRAQQKLILVASVSEMETKQKKWESEI 881 Query: 683 DM-----------------------VYDSFHNDERVKKIKLTNSINK----------DEW 709 D + D+ ++ + L + Sbjct: 882 DQKTNILPLIRKINAQSPLDFLGPKLEQKHEFDQTIEDMTLALEEQDKIYYLKFAVQSDI 941 Query: 710 IAYEWSTHHPE----------------NTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + + P +I K P+ ++ Sbjct: 942 EEKDEQKDDTQKLSSKMNDVVKTLYNFEYPFADATKTTAYQSVSEIKKVFNDPMDTELEN 1001 Query: 754 PYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSY 808 +++ S + +T + G +H +LQ E + I Sbjct: 1002 SRLISSSNRYLQPIDETPVFLEKQKFTGAEIGTAMHLVLQYYDYQGDKTELNLEQEIEEL 1061 Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKIN 856 +L + E S + Sbjct: 1062 VEL--GKLNPLMVPHLSKEALNWFVMSEFAAEFWQKPEKLHRESQFSSLVNASELFNDFS 1119 Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILK 912 I++ G ID + + + +F+YKT E I + QL +YE+ L Sbjct: 1120 DSAAKILVHGTIDGYFETDEGLILFDYKTDFVDKTHEEQAIDKIKQKYTGQLRLYEQALN 1179 Query: 913 DSYPNKSL-VCLLIYVSEPKVFIIP 936 + NK + LI + KV + Sbjct: 1180 EISENKKVIGKYLILLDARKVVPVD 1204 >gi|42519128|ref|NP_965058.1| hypothetical protein LJ1203 [Lactobacillus johnsonii NCC 533] gi|81667805|sp|Q74JA6|ADDA_LACJO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|41583415|gb|AAS09024.1| hypothetical protein LJ_1203 [Lactobacillus johnsonii NCC 533] Length = 1204 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 160/983 (16%), Positives = 307/983 (31%), Gaps = 130/983 (13%) Query: 52 TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----------DLKEKLK 101 L+Q + ++ + + + KF + + DL ++LK Sbjct: 254 RLEQFLNALEDDHSYNEIRASLMNCKFEKNIRKSKKWSEESLETYQESQKLKSDLNDQLK 313 Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKKNCVLDFEDLIINTND 158 K F + ++ + KS T+ L + + K++ ++D+ D+ Sbjct: 314 KIFANFFVVEEKEQVNILKKSEKLVKTIVDAEKKLIKRFGQLKREQNLIDYSDMEQFAFS 373 Query: 159 LLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 +L +A I + ++ N ILIDE QD + +Q +I ++ LF Sbjct: 374 ILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIAAI---------KKKGQNNLF 424 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F A P L + I L +FRST + V+ + Sbjct: 425 MVGDIKQSIYGFRQARPDLFLSKYHAY-----GQNDDSEKIVLSDNFRSTQRVTKTVNSL 479 Query: 278 FSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 F+ N G+ ++ ++ + + ++ + F+ Sbjct: 480 FNPILTANFGGIDYKKEGQLQFGATY---------YPTDLPTASEYIFTDKKQTQASFEE 530 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFL 392 + + + I + + + K KR ++ DI ++ R R D Sbjct: 531 NFGDEMDFSEIQMVIARIKQLKEENFQVWDRKTQLKRPLEYSDIAIITRTRSD----NLQ 586 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 + + D + +M R I + + D+ V +L+SPLFNF E + Sbjct: 587 VMQEFAKADLPLFVTDAQNYFQTFELVMIMNYLRLIDNPQQDIPLVAVLRSPLFNFKEPE 646 Query: 453 IFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +I + + K ++ ++ + L A + I Sbjct: 647 LAQIRVKTRSGNFYNALTSFASVNSDLGQKCKNFLQQLESLRSFAATHRISELIWSIYER 706 Query: 511 KKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRA 564 + G + L+ E + L + IS +E+ Sbjct: 707 THLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFIERMRKNQKDLAQPLL 766 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 V++MT+H +KGLE PVVF++ G + + I D G+ I Sbjct: 767 SDKADKAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTI---SKDGLGLTIKEKD 823 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 + + + S ++ EE R+LYVG+TRA +LI+ + K+ + D Sbjct: 824 YRIDSLVKSLADVEKRQQMLEEEARILYVGLTRAQQKLILVASVSEMEAKQKKWESEIDQ 883 Query: 685 -----------------------VYDSFHNDERVKKIKLTNSINK----------DEWIA 711 + D+ ++ + L + Sbjct: 884 KTNILPLIRKINAQSPLDFLGPKLEQKHEFDQTIEDMTLALEEQDKIYYLKFAVQSDIEE 943 Query: 712 YEWSTHHPE----------------NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + + P +I K P+ ++ Sbjct: 944 KDEQKDDTQKLSSKMNDVVKTLYNFEYPFADATKTTAYQSVSEIKKVFNDPMDTELENSR 1003 Query: 756 ILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCT 810 +++ S + +T + G +H +LQ E + I Sbjct: 1004 LISSSNRYLQPIDETPVFLEKQKFTGAEIGTAMHLVLQYYDYQGDKTEINLEQEIEELVE 1063 Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINCP 858 +L + E S + Sbjct: 1064 L--GKLNPLMVPHLSKEALNWFVMSEFAAEFWQKPEKLHRESQFSSLVNASELFNDFSDS 1121 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDS 914 I++ G ID + + + +F+YKT E I + QL +YE+ L + Sbjct: 1122 AAKILVHGTIDGYFETDEGLILFDYKTDFVDKTHEEQAIDKIKKKYTGQLRLYEQALNEI 1181 Query: 915 YPNKSL-VCLLIYVSEPKVFIIP 936 NK + LI + KV + Sbjct: 1182 SENKKVIGKYLILLDARKVVPVD 1204 >gi|225026995|ref|ZP_03716187.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353] gi|224955680|gb|EEG36889.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353] Length = 1221 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 172/1030 (16%), Positives = 322/1030 (31%), Gaps = 151/1030 (14%) Query: 18 KDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL-- 74 K+L + E + ++ ++ SQT+ + + +LS + Sbjct: 221 KELLQEKEALSKLLKNIAGEEVPEKYGVLLQDVSEYVEALSQTESYDAYYMVLSRGPVPA 280 Query: 75 -----TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + I +E +++ +L +K K++ + ++ + L Sbjct: 281 FPRATKKDKEWADYEIVKEWHQEVKELLQKQKETVFTAPAEELQREAAGIYPLLEEYIVL 340 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR------DVSAWIRYKIDQEINHILID 183 A+ Y KK+ V DF+DL +LL + + ++ I +D Sbjct: 341 AQRFEEIYLAYKKEKNVYDFDDLEHFALELLVDHYDEGGQAYPSETAKTLAKKYKMIFVD 400 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+L+Q ++ L+E TLF VGD KQSIY F A P LR Sbjct: 401 EYQDTNLVQETILEMLSEK---------DNNTLFTVGDVKQSIYRFRQARPDLFLRRNEK 451 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + ++ IEL +FRS +L + VFS D + R G Sbjct: 452 Y-----HNEEEGVSIELRDNFRSAPGVLCFTNYVFSRLMERDFGGVDYNEET---ALRAG 503 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS-ILARRIAYTISNMIGTDTI 362 + G + D + + +L + I I +I Sbjct: 504 EGGPM--------LEDKETSELLFFVKDSVQTLEEAPEDVLTETALITKRIQELIEEG-- 553 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 DI++L+R I V ++ I ++ Sbjct: 554 --------YHYGDIVILLRS---GAGRMEPMAEFLEKNGIPVSCENKTGYFHTREITIIL 602 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC----TQRHETETVYEYIQKFANCGI 478 + + D+ ++ S + F+E+++ K+ E T+Y+ + + G Sbjct: 603 NYLSVVDNVYQDIPMASVMLSSIGGFTEEELTKLRILVREPMREQYTLYDLMCLYLQEGA 662 Query: 479 S-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEF 532 K QH K + + I + G + + L Sbjct: 663 EEELRAKIQHFYKDLQYFREQKKEQPLGVLLWDIYQRTGFYYDVQLMPDGAKRKENLLML 722 Query: 533 LNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 L E+ + L +EQ + + N N V+IMT+H +KGLE PV Sbjct: 723 LKKAEDYEKTVFKGLFYFNRYMEQLKSYEIELGEAGSGTENENVVKIMTIHKSKGLEFPV 782 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF+ + K M P L + + + + + + K T EE Sbjct: 783 VFVSGLSKKFNRMDLTKPMLCHPELGIGMECVNITLRFHHPSLMKRAIQEKVWKDTLEEE 842 Query: 648 NRLLYVGMTRASDQLIICKHSNTSN----------EKKSNQRTWYDMVYDSFHNDERVKK 697 R+LYV MTRA +LI+ + +K + D + + R + Sbjct: 843 MRILYVAMTRAKRKLILTGIIKAQDLEAGLRLQINTQKWRATSAMDWLLPILADQFRSTQ 902 Query: 698 IKLTNSIN-----------------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 + + W+ E+E K+ Q Sbjct: 903 SEKSEEREGFLKNQETQKQAHSEGVTASWLKARLVNWEEILPFFEKERKQKEEFSYQIFM 962 Query: 741 K---------------KLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----------- 774 P ++ + S + T +T L Sbjct: 963 DTVVIPADVSMVEQSFSYEYPNRDATKWKRKYSVSELKTLSQTTLPEEESSIMLPEQNNF 1022 Query: 775 --------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 S+ RG IIHK+++++ +K + +P E Sbjct: 1023 EEEVKMPEFLKEEKSEIAATARGTIIHKIMELLPFGQIQTKKQLFE-WIDALKGTYPESE 1081 Query: 821 ---YKNLLLSITRLLENPMMTTA----MSCDSYSEVSVSGKINC--------PKKDIIIS 865 K L +I L + + + E+ + + + +++ Sbjct: 1082 KISAKWLYRAIEAFLFSEIGEKLSQMDRQGNLRKELPFTVGLPVSLMNADTQAEDTVVVQ 1141 Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 G ID +++++++ +YKT E + + Q+ Y+ L+ + L Sbjct: 1142 GIIDICGEAEESLWLIDYKTDRIKEGEESLLLDRYGNQMLYYKAALEQILGKRVSESYLY 1201 Query: 926 YVSEPKVFII 935 S K + Sbjct: 1202 SFSLKKFIPV 1211 >gi|229918202|ref|YP_002886848.1| recombination helicase AddA [Exiguobacterium sp. AT1b] gi|229469631|gb|ACQ71403.1| recombination helicase AddA [Exiguobacterium sp. AT1b] Length = 1205 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 166/1041 (15%), Positives = 343/1041 (32%), Gaps = 147/1041 (14%) Query: 5 FGLSLNESYELIY--KDLWPLPYFQVSDINKYVSLSMETG-NPTILKKAQTLQQASQTQC 61 FG +E LI + LW V D+ K + G P Q + Q + Sbjct: 201 FGEDPDEEAILIEFGQMLWHDIEKAVRDLRKLEAELRVAGYEPQSENIRQAIFPFEQLEG 260 Query: 62 IEERFSLLSSF-----FLTQKFTPQKN-------IITQEINKKSPDLKEKLKKSQDEFIK 109 +S L + F T K P+K ++ ++ L +++++ Sbjct: 261 ETIVWSELETAARAMKFGTMKAVPKKEEHQIYHEVLKPAYDQAKKKLTAAVEQARVSGAD 320 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + + + + YE+AK+ +DF DL +L++ + + Sbjct: 321 LLESVSMQQ--PLVETLVRTVRAFGQAYEQAKRDRAFVDFSDLEHYALAILRQDGGPSDV 378 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + +L+DE QDT+ IQ +I + + LF VGD KQSIY F Sbjct: 379 AALYKERFAEVLVDEYQDTNEIQETIINLVANE-------REEIGNLFMVGDIKQSIYRF 431 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 AEP + + ++ T I+L +FRS +++L ++ +F + + Sbjct: 432 RHAEPGLFIDKATRFRQANTG-----KRIDLSQNFRSRSEVLYGINDLFVQLMDEEVGEI 486 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + R + + P + + + S + R I Sbjct: 487 AYDEAAQLVPGR-----------------EYEPIPADPEFILVDGASRELSKQEVEGRAI 529 Query: 350 AYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 A I ++ D F S G+ R + +DI++LVR +K+ + Y I Sbjct: 530 ATRILELVSGDEPFKVTDESTGQLRNCEYRDIVILVRSKKERV---EQLMDILTQYNIPA 586 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 + I+ ++AL + I + D+ L+SP+F F + ++ +I + + Sbjct: 587 YTDSDGGYFQATEIRMILALLKVIDNPLQDIPLAGALRSPMFRFDDGELARI--RLESED 644 Query: 465 TVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520 + YE ++ A+ K ++ + A+ S + + Sbjct: 645 SFYEALKAKADDDDELGVKCGEMLDRLSRWRTYARNHSLSELIQQLFNDTGFYDFSGGLP 704 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575 G + L + L E++ Y L + +++ + R+ N VRIM Sbjct: 705 GGKGRQENLKALYDRALAYERSGYRGLYRFLRVMDRLQDTGEDLSEARSLGDEENVVRIM 764 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 TVH +KGLE PV + G Q ++++ + ++KS + + Sbjct: 765 TVHKSKGLEFPVTIVAQLGKQFNKRDQMQRVIFHKQYGISLDAIDVVTRTKSETFVKEMI 824 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------------------SNEKKSN 677 + L + + E R+LYV +TRA ++LI+ ++E + Sbjct: 825 RRDLDATMKAEEMRVLYVALTRAKEKLILVGTVGEPLKHLQQWLQVGQSGDLLASEARRE 884 Query: 678 QRTWYDMVYDSFHNDE----------------------------RVKKIKLTNSINKDEW 709 +T+ D + + + ++ + Sbjct: 885 AKTYLDWIAPALLRLPSATSFIESFGFTVPSTFQESTSWIYRVIGEADLAEIATLQEMMA 944 Query: 710 IAYEWSTHHPENTPLEREETI-----KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + + P++ EE + L E + + K + E Sbjct: 945 QLHHVQRFEAIDFPIQNEEETIRAVKRALTYEYPARDAVRTAAKQTVTELKRAMQLEQAA 1004 Query: 765 KGKTNLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 RG +H + Q+ P + I + + Sbjct: 1005 FEDPVRPIDTPYREPKWRQVKQTGAERGTTLHLIFQLAD--PNQPIVDQINQWEMQGMLS 1062 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCP---------KKD 861 E L + I + + ++ E+ + + + Sbjct: 1063 PVEAETARLAIPDIEMFFQTEVGQALADALERGTAWRELPFTYTVPAERVNPDGHFTDEH 1122 Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSY 915 ++I G ID + + + +YK+ E + + QL +Y + ++ + Sbjct: 1123 VLIQGIIDCLYFDGDSYVLLDYKSDAVTHLSDSREDAHERLRERYAIQLQLYREAIETIW 1182 Query: 916 PNKSLVCLLIYVSEPKVFIIP 936 + L+ + + + Sbjct: 1183 NIRVERTLIYSLDLQGIVTVS 1203 >gi|160934431|ref|ZP_02081818.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753] gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753] Length = 1179 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 149/988 (15%), Positives = 326/988 (32%), Gaps = 107/988 (10%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78 V + ++ +S + L + L+ ++ + + +F + Sbjct: 227 AALTQNSLSVMEDDEKISAAYREAFLEDLSSLEELRDRIVSKDWNRIAAGVRAFGFAKLK 286 Query: 79 TPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132 + + + +KL E + + R + ++ K Sbjct: 287 ALRGYRDDPLKLRIAGSRDTVKSVFKKLASLFQE-DEEKCRQDIRRLVPVVSELFGAVKR 345 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDT 188 + +E K++ + DF DL LL ++ W R + + + + +++DE QDT Sbjct: 346 FSRRLDEKKQQKRLADFGDLEHWALRLLVRQTEEGWRRTEDARLLAESFDEVMVDEYQDT 405 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q + R+++ + + LF VGD KQSIY F A P+ LR K Sbjct: 406 NEAQDMIFRAISRE----------EKNLFMVGDVKQSIYRFRQAMPEIFLRRKASYPDYD 455 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + + + L +FRS + V+ VF + + + T G Sbjct: 456 PEKNEYSAKVNLDRNFRSRHGVTDGVNFVFRQLMSVEMGEMEYT-------------GEE 502 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNGK 367 +L + + + T + ++ A I I++M+ + GK Sbjct: 503 ELTPGASYPEREEADTELHILTLPKGA----DMDTLEAEYIGSLIASMVRNGELVQDGGK 558 Query: 368 KRVIQAKDILVLVR-KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +R +D VL+R + R + I + + ++ R Sbjct: 559 QRPAAYRDFCVLIRNANAHGGVYAAKLREM----GIPAWSDTAGTFFGTPEVSVALSYLR 614 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHV 484 + + D+ + +L SP++ F+ DD+ +I R + ++ Sbjct: 615 VLDNPVQDIPLLSVLISPIWGFTPDDLAQIRMARKGDAFYFALKDAAERPDVLGARCHRF 674 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQNS 543 +++ +A + A R G+ ++ L + + E + Sbjct: 675 LEHTEAFRRLAATLPADRLIQRLYEATGYPAVAQAMRQGDLRLNNLRLLMKYARDYEGSG 734 Query: 544 YSSLQELISELEQYPPTIKR-----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 Y L I +++ A S + N VR+M++H +KGLE P+ L +T Q Sbjct: 735 YQGLSGFIRFIDRLQEQDSDLAPAAALSESANVVRVMSIHKSKGLEFPICILANTARQFN 794 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 K + + + P+L + + + +++ E R+LYV MTRA Sbjct: 795 --KRREDILLHPALGLGMKLRDETMTVQYDTMPREAVSLEIERGGMSEELRVLYVAMTRA 852 Query: 659 SDQLIICKHSNTSNEKK------------------SNQRTWYDMVYDSFHNDERVKKIKL 700 ++L++ + + + ++ D + ++ Sbjct: 853 KEKLVMLTSLDDPVKTLGKLGAQLTDSKAISPYVVRSAGSFSDWILSCALRHPSGGGLRE 912 Query: 701 TNSI-------NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK------KLFSPI 747 + + W + T E +Q+ + ++ P Sbjct: 913 KAGVLPGVMLTEGENWKILLNPVREQQETVSGETEKRRQIQADPELTALLQKRFSFVYPG 972 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDN--------QTFNRGLIIHKLLQVIFTLPEH 799 + + P + S + K + +S RG +H +Q Sbjct: 973 EALKSVPAKVAASELAGKENAKEYAAMSRPAFLTGQTMTPAERGTALHLYMQFADYRLAK 1032 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCP 858 + + + L + L I R ++ + S + E+ + ++ Sbjct: 1033 QDPEKQLRFLLEKGFLTQEQAEAVSLKKIERFFQSGLYRRMEQSENLRREIRFTVELAAS 1092 Query: 859 K-----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 + + +++ G +D + + + +YKT + +E + + + QLS+Y Sbjct: 1093 EVNPGLTGQNGREPVVLQGAVDCVFEENGGLILVDYKTDYV--KEEQELKNRYCRQLSLY 1150 Query: 908 EKILKDSYPNKSLVCLLIYVSEPKVFII 935 L+ + K L S + I Sbjct: 1151 ALALEQTTGLKVTEQYLYSFSLGEAVRI 1178 >gi|306829519|ref|ZP_07462709.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249] gi|304428605|gb|EFM31695.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249] Length = 1217 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 160/1026 (15%), Positives = 338/1026 (32%), Gaps = 140/1026 (13%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEER 65 + ++ E I + LW L F ++ T + + +Q + Sbjct: 233 IEKDKLTEQIKQALWDLESFLRYHLDNDAKEFPKATYLEAVQDVLDQIASLNQESDSKAY 292 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFK 121 ++L+ K + + L + + + + ++ D+ + Sbjct: 293 HAVLTRVVAISKEKNGRALANSSRKADLKPLSDAYNEERKAQFAKLGQLSDQITILDYQE 352 Query: 122 S-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + LAK Y E K++ +F D+ T ++L+ +R Sbjct: 353 RYHGDTWDLAKTFKNFMSDFVEAYRERKRQENAFEFADISHFTIEILENFP---QVREAY 409 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+ Sbjct: 410 QERFHEVMVDEYQDTNHIQERMLEFL-----------SNDHNRFMVGDIKQSIYRFRQAD 458 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ + + + ++ +I L +FRS +++L+ + VF + + + + Sbjct: 459 PQIFNEKFQRYAQ----NPKEGKLILLKENFRSNSEVLSATNDVFERLMDQELGEINYDS 514 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 + + ++ + + ++E E + R + I Sbjct: 515 MHQLVFANTKLTPNLENKAEFLLYDKDDSGQEEE-------ESQTEIKLTGEMRLVIKEI 567 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + K+I +L R ++Y I V + Sbjct: 568 LKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNY 614 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 L ++ ++ R I + D + V ++KSP+F+F ED++ ++ Q+ E + +K Sbjct: 615 LQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFDFDEDELARLSLQKAEDKIQENLYEK 674 Query: 473 FANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF- 517 N K + ++ A+ S +D I + Sbjct: 675 LLNAQKQATSQKNLIYTALAEKLNQFMDILNYWRLYAKTHSLYDLIWKIYNDRFYYDYVG 734 Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVR 573 G L + E++++ L I ++Q A + + V Sbjct: 735 AFPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVE 794 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H +KGLE P VF+++ + + + + + Sbjct: 795 LMTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEAHYPK 854 Query: 634 DLI------------KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN--------- 672 + K L+ ++ E RLLYV MTRA +L + + Sbjct: 855 TIKLSIPSLTYIQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAA 914 Query: 673 -----------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + K+ Q + + ++ L E I + ++ Sbjct: 915 ENGKLDKHTRLQAKNFQDWVWAIPKVFSKDNLNFSYCFLGEDQLTREAIGELENKSPLQD 974 Query: 722 ---TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------- 768 + ETIK+ ++ K + S + I P + PS I + Sbjct: 975 SSQADNRQSETIKEALEMLKEVEVYNSLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIA 1034 Query: 769 --------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814 S G H+L+Q I + +T + Sbjct: 1035 NQTQSPEKPISFDLPDFSTKEKVTGAEIGSATHELMQRIDLNQQPTL-TSLTETLKQ--V 1091 Query: 815 LWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRID 869 + L I + + ++ Y E S + ++D ++ G +D Sbjct: 1092 QTSPAVRDKINLSKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILD 1151 Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 + I +F+YKT + E + + QL++Y + L +Y +++ LI + + Sbjct: 1152 GYLLYGDRIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYLILLGK 1209 Query: 930 PKVFII 935 +V ++ Sbjct: 1210 DEVQVV 1215 >gi|322804717|emb|CBZ02269.1| ATP-dependent nuclease, subunit A [Clostridium botulinum H04402 065] Length = 945 Score = 357 bits (915), Expect = 6e-96, Method: Composition-based stats. Identities = 155/944 (16%), Positives = 311/944 (32%), Gaps = 150/944 (15%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEIN 178 A L + YE K++ ++DF D+ +L + + I ++ Sbjct: 2 KALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSDGHIIPSDIALNYRKKFA 61 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVG 220 +LIDE QD++L+Q ++ ++ + F VG Sbjct: 62 EVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLIFNEEEISLEEPQIGLDIPNRFMVG 121 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D KQSIY F A+P+ L + +K ++L +FRS +++ V+ +F Sbjct: 122 DVKQSIYRFRQAKPEIFLDKYNEY---NEEEDRKNRKVKLFKNFRSREEVINGVNYLFKQ 178 Query: 281 PENA--QGLSEDSTTTIRHRSSRIG--QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 + L ++ +S + ++L S+ ++ + Sbjct: 179 IMSKTIGELDYTEEEALKIGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALD 238 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLT 393 + + A++I + N + + G+ R +Q +DI++L+R + + Sbjct: 239 NIQLEGRLAAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPV---F 295 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 I V + D IK +++L + I + D+ + +L+SP+ +F++D++ Sbjct: 296 VEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDEL 355 Query: 454 FKIC------------------TQRHETETVYEYIQKFANCGISKFQH-----------V 484 I + + ++ Y + + N + Sbjct: 356 IDIRMVNKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSF 415 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543 I+ + + +F + + + G + L + + S Sbjct: 416 IEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTS 475 Query: 544 YSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 Y L I+ + + N N VRIM++H +KGLE PVV L TG Sbjct: 476 YKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFN 535 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 K + L P + + + + + ++ T E R+LYV +TRA Sbjct: 536 MTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRA 595 Query: 659 SDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKL 700 ++LII N ++ + +T+ D + + + + Sbjct: 596 REKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDAVSFRE 655 Query: 701 TN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 +K +W W+ +E +E ++ + S K +I Sbjct: 656 ELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESNYKEEI 715 Query: 752 --------------NEPYILNPSTID------------------TKGKTNLESLLSDNQT 779 + P L+ S + K Sbjct: 716 YKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEKKKISP 775 Query: 780 FNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 RG IIH +Q + E K I + + + N I + + Sbjct: 776 SERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVINPYK-ILKFCRGEL 834 Query: 837 MTTAM-SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEY 883 + S + E+ S +I + +II G ID + + + +Y Sbjct: 835 GKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLDY 894 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 KT + +IE I + Q+ YE+ L K++ +Y+ Sbjct: 895 KTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 935 >gi|167771642|ref|ZP_02443695.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM 17241] gi|167666282|gb|EDS10412.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM 17241] Length = 1174 Score = 357 bits (915), Expect = 7e-96, Method: Composition-based stats. Identities = 149/957 (15%), Positives = 300/957 (31%), Gaps = 95/957 (9%) Query: 32 NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ---- 87 ++ V + L + + A + + L F + + + + Sbjct: 241 DEAVQAAYGAALSGDLLQLEQTFAALTARDWDRVQERLRLFTFEKLRPLRGDSPQKSAVQ 300 Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 + K + + E+L+ Q + + L + + + E K++ ++ Sbjct: 301 ALRKSARAIVEELRDRQFCASSAEFLDDVAFLRPMVSLLFDLTRAFDRLFTEQKQQKYLM 360 Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQE----INHILIDEVQDTSLIQWEVIRSLTEDF 203 DF D+ LL K+ + + ++ QE + +LIDE QDT+ Q + R+++++ Sbjct: 361 DFSDMEQYAISLLVKKAGPGYAKTELAQEAGALYDEVLIDEFQDTNAAQEIIFRAVSQN- 419 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 LF VGD KQSIY F A P+ + +K+ + + I L + Sbjct: 420 ---------ESNLFMVGDVKQSIYRFRQAMPELFMEKKKRFAPY--DGKTFPAKIVLGKN 468 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 FRS + V+ FS + + D S + Sbjct: 469 FRSAQAVTGCVNFFFSQLMSGEIGEVDYNQEEALSPG--------------ASFPEGIEA 514 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRK 382 + S + AR +A I+ M+ + ++G R ++ DI VL+R Sbjct: 515 GCTLRLIDASQYAGELDSTQLEARDVAEQIAGMLERGDLVADGGVTRRVRPSDICVLLRS 574 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 L + V + I ++AL R + + D+ F L Sbjct: 575 PAQKA--QAYFDAL-TRRGVPVWAEPKSGFLTSREIAPVVALLRVLGNPTLDIDFASALL 631 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 SPLF + D++ +I +Y K A G + + + I L A + Sbjct: 632 SPLFGLTADELTQI-RLTDRRAPLYIAAAKAAEAGDPRAANAVDTIARLRRFASNATADA 690 Query: 503 FFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----- 556 I + + R G L + + Y L I +++ Sbjct: 691 VIRRIYEECDYMGKVQAMRMGQARRANLLLLVQYACDYHAGGYKGLSGFIGFVDRLIDRG 750 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + S + VR+M++H +KGLE PVVFL DT + + L Sbjct: 751 GDFAPAASMSEQADVVRVMSIHRSKGLEFPVVFLCDTAKRFNREDLNGNTLLHSELGFAC 810 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--- 673 + + + L L++S E R+LYV +TRA +++I E Sbjct: 811 VRRDFELMKQYTTVPMQALRLELERSMLSEELRVLYVALTRAKQRIVITGVVTKPEELLC 870 Query: 674 ---------------KKSNQRTWYDMVYDSFHNDER---------VKKIKLTNSINKDEW 709 + + D + + + + Sbjct: 871 ALVSESGTDGKLPPHQVRGANAYLDWILMAAARHPALAERFGLAGAPLDASEAPLTFELK 930 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG--- 766 A + + + + ++ + P + P + S + Sbjct: 931 AAADGEPDAEKTSETTAASPDEAALEALRRRLAFRYPFEAQTKIPTKMAVSQLAGSAYAA 990 Query: 767 -----KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 RG +HK +Q + + + + L + Sbjct: 991 SYRFSARPAFLQGDGLTGAQRGNALHKFMQFADYQAAARDASGEIARMAREGFLSRQEAD 1050 Query: 822 KNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGK-----------INCPKKDIIISGRID 869 + + + S + E+ + + + I G D Sbjct: 1051 SIRPDRVRAFFSSRLAARIFSAKQVWRELRFLAEAGERELGAYSALFTNGGETAIQGVAD 1110 Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + + + +YKT + + + + QL++Y L ++ + ++Y Sbjct: 1111 CVFLEEDGAVVVDYKTDRV--KTPDELRERYRVQLALYRNALTEAL-GVPVKECVLY 1164 >gi|315174632|gb|EFU18649.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1346] Length = 1271 Score = 356 bits (914), Expect = 7e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 317 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 377 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S+ LF VGD KQSIYSF A+P + + G++ I L Sbjct: 437 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 485 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 545 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 602 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 658 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 717 EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 777 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 837 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 897 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKVDEYQQEVV 956 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 957 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G +D Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIVDGYIE 1196 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1197 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256 Query: 931 KVF 933 + Sbjct: 1257 VII 1259 >gi|315030721|gb|EFT42653.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4000] Length = 1271 Score = 356 bits (914), Expect = 7e-96, Method: Composition-based stats. Identities = 153/963 (15%), Positives = 299/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 317 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 377 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 437 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 485 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 545 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 602 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 658 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 717 EKWREQARRNQISNLLWTIYRETAYLDYIGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 777 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 837 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 897 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 957 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196 Query: 874 SQQNIFIFEYKTHHHVPQEIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H ++ I + Q+++Y + L+++ + LI ++ Sbjct: 1197 LDNQCILYDYKTDHVKGTSLQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256 Query: 931 KVF 933 + Sbjct: 1257 VII 1259 >gi|313472179|ref|ZP_07812671.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153] gi|313449090|gb|EEQ68552.2| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153] Length = 1173 Score = 356 bits (914), Expect = 7e-96, Method: Composition-based stats. Identities = 159/1001 (15%), Positives = 321/1001 (32%), Gaps = 149/1001 (14%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + + + + I D P+ + +++ K + + K+ + + + ++ Sbjct: 220 IEMTDKVDKILAD----PFNEATELEKIM-----KDFLSFSKRLAQAETSLENGSFDQIR 270 Query: 67 SLLSSFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 + L T+ P+K+ ++I + L + + +++ + F + T Sbjct: 271 ASLQDCQFTEN--PRKSPKWDEDILDRYASLSQVRTELREQVKSLFAAFFVVDNEEQTAV 328 Query: 126 SLT---------LAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-ID 174 LA+ L A + K+K +LD+ D+ +L + + + Sbjct: 329 MKQSSMIIKAVCLAEKELIATFNSLKRKQNLLDYSDMEQLAYQILTSDTTAGHLARQFYQ 388 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + IL+DE QD + +Q +I+ + + LF VGD KQSIY F A+P Sbjct: 389 NKFTEILVDEYQDINKLQERIIQLMKCE----------HNNLFMVGDVKQSIYGFRQADP 438 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292 L + + + I L +FRST + +V+K+F+ + G+ + Sbjct: 439 SLFLNKYQKFAED-----SSSKRIVLADNFRSTKPVTKIVNKLFNPLLTPDFGGIDYQNE 493 Query: 293 TTIRHRSSR--IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 ++ +S +L + S S + + Sbjct: 494 GQLKFGASYYPDNLPAASELLFYDK---------------------SEASDESNQIQLVI 532 Query: 351 YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I +I + G KR I+ DI +L R R I + + Sbjct: 533 NRIKQLIDEGFEVFDVKTGLKRPIEFSDIAILTRSRSQNLD----LLKQFAQNNIPLFVS 588 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 D + +M+ + + + + D+ V +L+SP+FNF E D+ KI + + Y Sbjct: 589 DVANYFQTFELTIIMSYLKIVDNPDQDIPLVAVLRSPIFNFKEPDLAKI-RIKSPNMSFY 647 Query: 468 EYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523 + + + + + + + +L A + I + S G Sbjct: 648 SALTNYVSENDELSKRIKDFLNQLADLRDFALNHRISETIWSIYARTSLLEIVTSLPNGK 707 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVH 578 + L+ E + L + I+ + + N V++MT+H Sbjct: 708 QRRINLENLYERANSYESAGFKGLYQFINFINRMRKNQKDLAQPLLSKEAENSVQLMTIH 767 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE PVVF + Q I D GI + + + + + Sbjct: 768 ASKGLEFPVVFYLGLEHQFQKSDLSGNYII---SGDSCGITVVRSDWRIDSLVKAMGNVT 824 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIIC-----------------------------KHSN 669 +K EE R++YV +TRA +LI+ Sbjct: 825 KQKQLLEEEARIMYVAVTRARQKLILVTNFKDFAKDTDNLKASLANNGSLTLTSELAAQK 884 Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH------------ 717 ++ + + V+ + + D + Sbjct: 885 PADLLLPQLDLAHHFINQITDLQPEVESKQDFLVVTGDATVVELAKETNMDEKGEVSEFI 944 Query: 718 -------HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--IDTKGKT 768 + P + T ++ K PI +++ + + + Sbjct: 945 VKNVKKLYEATYPFKDATTTTAYQSVSELKKAFNDPIDDELANSRFIKSANRYLQDIDTR 1004 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 G +H +LQ + I ++ KL + I Sbjct: 1005 PGFLFEDGFTGAEIGTAMHLILQFFDYQGNTSVEAEIERLV-QSGKLNSKIVPHLPIAEI 1063 Query: 829 TRLLENPMMTTAMSC--DSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQN 877 T + + + EVS S + P I++ G +D + Sbjct: 1064 TWFVNSDFAKKFWNEPGKLKREVSFSSLLPAADIFTPFSDPNAKILVHGTVDGYYLDDDG 1123 Query: 878 IFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDS 914 I +F+YKT + ++ I + QL +YE+ L Sbjct: 1124 IILFDYKTDYVNKNQLAQSINKIKDKYTGQLRLYERALNQL 1164 >gi|229546208|ref|ZP_04434933.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX1322] gi|256852763|ref|ZP_05558133.1| exonuclease RexA [Enterococcus faecalis T8] gi|307291096|ref|ZP_07570981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411] gi|229308732|gb|EEN74719.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX1322] gi|256711222|gb|EEU26260.1| exonuclease RexA [Enterococcus faecalis T8] gi|306497750|gb|EFM67282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411] Length = 1264 Score = 356 bits (914), Expect = 7e-96, Method: Composition-based stats. Identities = 153/963 (15%), Positives = 299/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ + I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISNLLWTIYRETAYLDYIGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHVPQEIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H ++ I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKGTSLQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|268319455|ref|YP_003293111.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785] gi|262397830|emb|CAX66844.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785] Length = 1204 Score = 356 bits (914), Expect = 7e-96, Method: Composition-based stats. Identities = 158/935 (16%), Positives = 297/935 (31%), Gaps = 120/935 (12%) Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCV 146 K DL ++LKK F + ++ + KS T+ L + + K++ + Sbjct: 302 QKLKSDLNDQLKKIFANFFVVEEKEQVNILKKSEKIVKTIVDTEKKLIKRFGQLKREQNL 361 Query: 147 LDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 +D+ D+ +L +A I + ++ N ILIDE QD + +Q +I ++ Sbjct: 362 IDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIAAI------ 415 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 LF VGD KQSIY F A P L + I L +FR Sbjct: 416 ---KKKGQNNLFMVGDIKQSIYGFRQARPDLFLSKYHAY-----GQNDDSEKIILSDNFR 467 Query: 266 STADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 ST + V+ +F+ N G+ ++ ++ + + Sbjct: 468 STKRVTKTVNSLFNPILTANFGGIDYKKEGQLQFGATY---------YPADLPTASEYIF 518 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLV 380 ++ + F+ + + + I + + + K KR ++ DI ++ Sbjct: 519 TDKKQTQASFEENFGDKMDFSEIQMVIARIKQLKKENFQVWDRKTQLKRPLEYSDIAIIT 578 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R R D + + D + +M R I + + D+ V + Sbjct: 579 RTRSD----NLQVMQEFAKADLPLFVTDAQNYFQTFELVMIMNYLRLIDNPQQDIPLVAV 634 Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFC 498 L+SPLFNF E ++ +I + + K ++ ++ + L A Sbjct: 635 LRSPLFNFKEPELGQIRVKTRSGNFYNALTSFASVNSDLGQKCKNFLQQLESLRSFAATH 694 Query: 499 SPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557 + I + G + L+ E + L + IS +E+ Sbjct: 695 RISELIWSIYERTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFIERM 754 Query: 558 -----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 N V++MT+H +KGLE PVVF++ G + + I Sbjct: 755 RKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTI---S 811 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 D G+ I + + + S ++ EE R+LYVG+TRA +LI+ + Sbjct: 812 KDGLGLTIKEKDYRIDSLVKSLADVEKRQQMLEEEARILYVGLTRAQQKLILVASVSEME 871 Query: 673 EKKSNQRTWYD-----------------------MVYDSFHNDERVKKIKLTNSINK--- 706 K+ ++ D + D+ ++ + L Sbjct: 872 TKQKKWKSEIDPKTNILPLIRKINAQSPLDFLGPKLEQKHEFDQTIEDMTLALEEQDKIY 931 Query: 707 -------DEWIAYEWSTHHPE----------------NTPLEREETIKQLMDEQKIPKKL 743 + + + P +I K Sbjct: 932 YLKFAVQSDIEEKDEQKDDTQKLSSKMNDVVKTLYNFEYPFADATKTTAYQSVSEIKKVF 991 Query: 744 FSPIKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPE 798 P+ ++ +++ S + +T + G +H +LQ E Sbjct: 992 NDPMDTELENSRLISSSNRYLQPIDETPVFLEKQKFTGAEIGTAMHLVLQYYDYQGDKTE 1051 Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS--- 852 + I +L + E S Sbjct: 1052 LNLEQEIEELVEL--GKLNPLMVPHLSKEALNWFVMSEFAAEFWQKPEKLHRESQFSSLM 1109 Query: 853 ------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIA 902 + I++ G ID + + + +F+YKT E I + Sbjct: 1110 NASELFNDFSDSAAKILVHGTIDGYFETDKGLILFDYKTDFVDKTHEEQAIDKIKQKYTG 1169 Query: 903 QLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIP 936 QL +YE+ L + NK + LI + KV + Sbjct: 1170 QLRLYEQALNEISENKKVIGKYLILLDARKVVPVD 1204 >gi|255976207|ref|ZP_05426793.1| exonuclease RexA [Enterococcus faecalis T2] gi|307278851|ref|ZP_07559914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860] gi|255969079|gb|EET99701.1| exonuclease RexA [Enterococcus faecalis T2] gi|306504522|gb|EFM73729.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860] Length = 1264 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 299/963 (31%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGTEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALLHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFHGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V + Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|291535312|emb|CBL08424.1| recombination helicase AddA, Firmicutes type [Roseburia intestinalis M50/1] Length = 1237 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 151/1016 (14%), Positives = 310/1016 (30%), Gaps = 146/1016 (14%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ----KFTPQKNIITQEINKKSPD 95 LKK + + + + + LS L +K + +++ + D Sbjct: 248 AKALEGDLKKYKEIAASESFADFYQNYRNLSYDRLASSRGFDGNEEKLELVKKLREMGKD 307 Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 +K+ + K + L + + K++ ++DF DL Sbjct: 308 AVKKINRQYFFTSPEIMAEQMKKTAPMAAELVRLTLEFDETFTAEKRRKNLVDFHDLEHF 367 Query: 156 TNDLLKKRDVSA--WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 ++ + + I+IDE QD++ +Q ++R+++ + Sbjct: 368 ALNIFVDEETGKVKKTAEEFRDNFKEIMIDEYQDSNEVQETILRAISRE-------ERGE 420 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 LF VGD KQSIY F A P+ + + K I+L +FRS ++L Sbjct: 421 YNLFMVGDVKQSIYRFRLARPELFMEKYDTYS----LTDAKMQRIDLHKNFRSRNEVLDF 476 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + Q T +++ Sbjct: 477 SNDIFYRIMKRNLGNVEYDADAALYPGASYQEETDMFTPEILLVDGDD---------ELL 527 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITF 391 D + + AR IA I ++GT + G+ R +Q D+++L+R Sbjct: 528 DDAAADDKKLLEARMIAKRIKELMGTQKVTDKATGELRPVQYSDMVILLRSLSG---YAD 584 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + ND I + ++ ++++ R + + D+ +L+SP+ S++ Sbjct: 585 RFAAVLNDAGIPAHTVSATGYFSTVEVQTVLSMLRILDNPRQDIPLTAVLRSPIAGLSDE 644 Query: 452 DIFKICTQRHE--------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497 ++ K+ + + + E + + K +L + Sbjct: 645 ELAKLRLKDKDVRFYECVLEECERLKQEAEENPGQGRDDSEEKLYRFYVTYEKLRQLVPD 704 Query: 498 CSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556 H+ L+L + G+ L + + E SY L + +++ Sbjct: 705 TPIHELIELLLKETGYGDYAAAMPAGDRRHANLLMLVEKAIAYENTSYKGLFHFVRYIDE 764 Query: 557 YPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 N N VRIM++H +KGLE PVVF G ++ + P Sbjct: 765 LQKYDVDFGEADLIGENENVVRIMSIHKSKGLEFPVVFAAGMGKNFNRQDTRSRLVLHPE 824 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L + KS + K + E R+LYV +TRA ++LI+ + Sbjct: 825 LGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENLGEELRVLYVALTRAKEKLILTGSLKKA 884 Query: 672 NE----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 E + + + D + + + + +I+L + + Sbjct: 885 EETLSYIKAFPEELLSYLGRESAAGYLDWILPAAASCQDKYQIRLMRAAELVQEEMETQI 944 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 + + Q+ ++ + + S + K + E+ Sbjct: 945 KDEWNRSACMEKAAQADEKKVQQFSERFHRRYAYENDVQRKNKYSVSELKHRAMREAFEK 1004 Query: 776 DNQT------------------------------FNRGLIIHKLLQVIFTLPEHKRKNFI 805 + + RG +H++++ K + Sbjct: 1005 EEEAVPVFQSEEVVPYVPAFAREIEQQSEDASPGALRGTAMHRIMECYQFSSGVSAKEQV 1064 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCP--- 858 K + + + + + Y E Sbjct: 1065 AGMLEKEQITPEMHGLIRIP-QVEYFVNADIGKRMGAAEKDGKLYREKPFVMGFTDEQLD 1123 Query: 859 ------------------------------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888 K+ +I G ID I + I + +YKT Sbjct: 1124 EFGFAENTEQAEKVKSMGRVGNIGETEYTGKELTLIQGIIDVFWIEKDGIVLLDYKTDRV 1183 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNK--------SLVCLLIY-VSEPKVFII 935 + + + AQL +YE+ L Y N+ + L+Y KV + Sbjct: 1184 --DTEKELSERYAAQLKLYEEALNRVYENEKDAAGNPLKVKEKLLYSFRLGKVIPV 1237 >gi|256965486|ref|ZP_05569657.1| UvrD/REP helicase [Enterococcus faecalis HIP11704] gi|307273804|ref|ZP_07555026.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855] gi|256955982|gb|EEU72614.1| UvrD/REP helicase [Enterococcus faecalis HIP11704] gi|306509489|gb|EFM78537.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855] Length = 1264 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 156/963 (16%), Positives = 298/963 (30%), Gaps = 136/963 (14%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 +++ +++ LKK + + + K Y K+ + Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202 +DF DL T +L K W + ++ + +L+DE QD + +Q ++ L Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 LF VGD KQSIYSF A+P + + G++ I L Sbjct: 430 LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477 Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS D+L + VFS + + ++ D + + H + + + + + Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 + E + + + A I +I + + + K R I +DI+ Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L +K+ I + + L+ I V ND I+ ++AL + I + D+ Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488 +L+SP+ E+++ I ET + YE F K + + Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLMFNQKMEPTMEEAVVQEKTIRFAESL 709 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + A+ I G + L ++ E+ ++ L Sbjct: 710 EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769 Query: 548 QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + +E+ K + N VR+MT+H +KGLE PVVF++D + Sbjct: 770 FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 ++ +L + + + + E R LYV +TRA + Sbjct: 830 ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889 Query: 662 -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691 L++ + ++ +V Sbjct: 890 LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKAAEYQREVV 949 Query: 692 ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 I+ N I E+ + ++ Sbjct: 950 VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769 P + + S I Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069 Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + G H LLQ+I P ++ + +N + PA K L Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129 Query: 826 LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 I + + + E S I + D++I G ID Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGFIE 1189 Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 +++YKT H PQ I I + Q+++Y + L+++ + LI ++ Sbjct: 1190 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249 Query: 931 KVF 933 + Sbjct: 1250 VII 1252 >gi|312898123|ref|ZP_07757515.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359] gi|310620791|gb|EFQ04359.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359] Length = 1220 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 161/1018 (15%), Positives = 308/1018 (30%), Gaps = 128/1018 (12%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 +++ +E E + V ++N E K A ++ S+ + Sbjct: 229 IRSALSRCADEYDESLK------ILEYVEELNGQYERFKEE--RNRFKAASEIKSWSRME 280 Query: 61 CIEERFS--LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 F L S + K+ D +K++ + + + + Sbjct: 281 DFFSDFDFGRLKSMRNLVADVADAWNDCKAHRDKAKDTVKKIRDTYFTKTSKQWVDDLIQ 340 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV------SAWIRYK 172 + A L + Y AK++ LDF DL +L D + + Sbjct: 341 AGHTMSALSGLIRDFYKAYNAAKREKNWLDFGDLEHYCLQILTVHDEQTGEVLPSAAAKE 400 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + ILIDE QDT+ +Q + + S F VGD KQSIY F A Sbjct: 401 MRSTFKEILIDEYQDTNGVQELITTLV-----------SDGTNRFMVGDIKQSIYRFRLA 449 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 +P L + ++RA I L ++FRS ++ V+ +FS D Sbjct: 450 DPTLFLEKYMTFERRAEAVN---RCIVLSMTFRSAPAVIEAVNDIFSYAMTEAATGMDYG 506 Query: 293 TTIRHRSSR-IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 + R + G +L + D +ESS R +A Sbjct: 507 DNEKLYVGRTDDEPGVAELHILDEVTTYESLETDGGEESDDDDDSAEESSFIRQCRFVAA 566 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 I + D ++ KDI+VL+R + D I + Sbjct: 567 RIGELKAADP--------SLKYKDIVVLLRSVSRKA---EDLLTVLQDAGIPAYAEQKGG 615 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYE 468 + ++ + AL I + D+ +L+SP+ +E + +I R Sbjct: 616 YFNVTEVRLMTALLACIDNPCRDIELAAVLRSPIVGINEATLAEIRMYRDGYLVDALEAY 675 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVID 527 + + + ++ + I + + G+ Sbjct: 676 TAGLHDGVYKERLSEFLFRLDAWRTYSRRAGVAELLRRIYEKTSYIDYVAAMKNGDLRRA 735 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKG 582 L+ + E+ + L + +E+ R + VRIMT+H +KG Sbjct: 736 NLEALYERAGQYERAGFRGLFRFLKFIERMKKKGLDLAPARVVGEEEDVVRIMTIHKSKG 795 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFLV+T + + L + + + + Sbjct: 796 LEFPVVFLVNTEKTFNKQDEQEPVLYHKELGIGIRAFDAKWRMTWPTLAYNGIKERTVWE 855 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------------------KSNQRTWYDM 684 + E RLLYV MTRA ++LI+ + K ++ + Sbjct: 856 NRAEEERLLYVAMTRAKNRLILVGTVKSRGSKNTDCLYDRLARFRNDVHAEAGTSYLDWI 915 Query: 685 VYDSFHNDERVKKIKLTNSINK-------------DEWIAYEWSTHHPENTPLEREETIK 731 + V + ++ ++ + A + E Sbjct: 916 LPPLLRKLPDVTDLTASDENSEFVHAGVWQVTVHTEPVDAGKAMADVLRPEEAHLEAVRA 975 Query: 732 QLMDEQKIPKK------LFSPIKNDINEPYILNPSTIDTKGKTNLESLL----------- 774 + IP P + + L+ S I + E Sbjct: 976 DMPTGTAIPAWLDEALSFTYPFEAATHTVAKLSVSEIKRRLAEATEEEDLLQEGEHLFST 1035 Query: 775 ------------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 + G + HK +Q++ K KN+ + Sbjct: 1036 GVEDDETDLTRPPWLCEKASQSPTFAGTVFHKAVQLLDFADLTKENIVEQVEGWKNSGRF 1095 Query: 817 PAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKIN------CPKKDIIISGRI 868 ++E L ++ + + S D E + + + I++ G + Sbjct: 1096 TSEELSRLRMNDLYHFAESHLAARIQASPDVRREYGFTFLADSDKVSRVEGERILVQGVV 1155 Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 D + + I +YKT + + QL++Y+ ++ + + ++IY Sbjct: 1156 DCLFVEGDEWIIVDYKTDRL--NTADEFKKRYAVQLNLYKLAVEQI-SQRKVKEMIIY 1210 >gi|312871743|ref|ZP_07731831.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a] gi|311092685|gb|EFQ51041.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a] Length = 1206 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 161/928 (17%), Positives = 309/928 (33%), Gaps = 123/928 (13%) Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCVLDFEDLII 154 ++LKK F ++ + K+ T+AK + + K+KN ++DF D+ Sbjct: 313 DQLKKLFASFFITDEKEQLELLAKAQKLVKTIAKVELTFINEFGKLKRKNNIIDFNDMEQ 372 Query: 155 NTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L + S R + + IL+DE QD + +Q ++I+ + E Sbjct: 373 FAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVIKEK---------GK 423 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 LF VGD KQSIY F A+P L++ + I L +FRS+ ++ + Sbjct: 424 NNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERIILSDNFRSSKNVTQI 478 Query: 274 VDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 V+ +F EN G++ +++ + +GT + S D +E Sbjct: 479 VNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEV 538 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTP 387 + D + + I + D + KR I+ DI +L R + + Sbjct: 539 NDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE-- 586 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 + K+ + +D + + + I + + D+ V +++SPL+ Sbjct: 587 --NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYG 644 Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDF 503 F+E + KI + + Y+ I + + + I + + + + Sbjct: 645 FTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISEL 703 Query: 504 FTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY----- 557 I + G + L+ E + + L + I+ +++ Sbjct: 704 ICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKY 763 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + + + +++MT+H +KGLE P+VFL+ + I G Sbjct: 764 DFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLG 821 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + I + + + S K EE R+LYVG+TRA +LI+ N Sbjct: 822 LTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANENIIPDF 881 Query: 678 QR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT------------- 722 Q ++ + ++ L + ++ S E Sbjct: 882 QNKLDAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDRELDKEDKVHYIQVMQL 941 Query: 723 --------------------------------PLEREETIKQLMDEQKIPKKLFSPIKND 750 P + T +I K P + Sbjct: 942 KSQASVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKE 1001 Query: 751 INEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFI 805 + ++N + ++ + L G +H LLQ + I Sbjct: 1002 SDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLI 1061 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------G 853 + +N +L A S + Y E+ S Sbjct: 1062 ENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFH 1119 Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEK 909 N I++ G ID I I +F+YKT +E ++ + QLS+Y Sbjct: 1120 NFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYAS 1179 Query: 910 ILKDSYPNKSLVC-LLIYVSEPKVFIIP 936 L + +K + LI +S K+ + Sbjct: 1180 ALNNL-SDKKVKAKYLILLSINKIVKVD 1206 >gi|312874236|ref|ZP_07734270.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d] gi|311090306|gb|EFQ48716.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d] Length = 1206 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 159/928 (17%), Positives = 306/928 (32%), Gaps = 123/928 (13%) Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCVLDFEDLII 154 ++LKK F ++ + K+ +AK + + K+KN ++DF D+ Sbjct: 313 DQLKKLFASFFITDEKEQLELLAKAQKLVKAIAKVELTFINEFGKLKRKNNIIDFNDMEQ 372 Query: 155 NTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L + S R + + IL+DE QD + +Q ++I+ + E Sbjct: 373 FAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVIKEK---------GK 423 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 LF VGD KQSIY F A+P L++ + I L +FRS+ ++ + Sbjct: 424 NNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERIILSDNFRSSKNVTQI 478 Query: 274 VDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 V+ +F EN G++ +++ + +GT + S D +E Sbjct: 479 VNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEV 538 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTP 387 + D + + I + D + KR I+ DI +L R + + Sbjct: 539 NDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE-- 586 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 + K+ + +D + + + I + + D+ V +++SPL+ Sbjct: 587 --NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYG 644 Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDF 503 F+E + KI + + Y+ I + + + I + + + + Sbjct: 645 FTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISEL 703 Query: 504 FTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY----- 557 I + G + L+ E + + L + I+ +++ Sbjct: 704 ICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKY 763 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + + + +++MT+H +KGLE P+VFL+ + I G Sbjct: 764 DFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLG 821 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + I + + + S K EE R+LYVG+TRA +LI+ Sbjct: 822 LTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANEKIIPDF 881 Query: 678 QR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT------------- 722 Q ++ + ++ L + + S E Sbjct: 882 QNQLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDRELDKEDKVHYIQVMQL 941 Query: 723 --------------------------------PLEREETIKQLMDEQKIPKKLFSPIKND 750 P + T +I K P + Sbjct: 942 KSQPSVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKE 1001 Query: 751 INEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFI 805 + ++N + ++ + L G +H LLQ + I Sbjct: 1002 SDNSKLINSANKYLMPISDKPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLI 1061 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------G 853 + +N +L A S + Y E+ S Sbjct: 1062 ENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFH 1119 Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEK 909 N I++ G ID I I +F+YKT +E ++ + QLS+Y Sbjct: 1120 NFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYAS 1179 Query: 910 ILKDSYPNKSLVC-LLIYVSEPKVFIIP 936 L + +K + LI +S K+ + Sbjct: 1180 ALNNL-SDKKVKAKYLILLSINKIVKVD 1206 >gi|325912158|ref|ZP_08174556.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D] gi|325476108|gb|EGC79276.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D] Length = 1206 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 154/942 (16%), Positives = 305/942 (32%), Gaps = 128/942 (13%) Query: 83 NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + + + L + +++ + K + + + Sbjct: 305 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358 Query: 141 KKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+KN ++DF D+ +L + S R + + IL+DE QD + +Q ++I+ + Sbjct: 359 KRKNNIIDFNDMEQFAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 E LF VGD KQSIY F A+P L++ + I Sbjct: 419 KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 464 Query: 260 LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316 L +FRS+ ++ +V+ +F EN G++ +++ + +GT + S Sbjct: 465 LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 524 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373 D Q ++ + D + + I + D + KR I+ Sbjct: 525 NDDKQSIADEDEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 574 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 DI +L R + + + K+ + +D + + + I + + Sbjct: 575 SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 630 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIH 489 D+ V +++SPL+ F+E + KI + + Y+ I + + ++ I + Sbjct: 631 DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCKNFINELS 689 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 + + + I + G + L+ E + + L Sbjct: 690 HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 749 Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I+ +++ + + + +++MT+H +KGLE P+VFL+ + Sbjct: 750 QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 809 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 I G+ I + + + S K EE R+LYVG+TRA +LI Sbjct: 810 NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 867 Query: 664 ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + Q ++ + ++ L + + S E Sbjct: 868 MVSTMANEKIIPDFQNQLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDREL 927 Query: 722 T---------------------------------------------PLEREETIKQLMDE 736 P + T Sbjct: 928 DKEDKVHYIQVMQLKSQPSVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 987 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794 +I K P + + ++N + ++ + L G +H LLQ Sbjct: 988 SEIKKAFEYPNDKESDNSKLINSANKYLMPISDKPAFLKKANFTGAEIGTAMHLLLQYYD 1047 Query: 795 ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848 + I + +N +L A S + Y E Sbjct: 1048 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYRE 1105 Query: 849 VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895 + S N I++ G ID I I +F+YKT +E + Sbjct: 1106 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1165 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936 + + QLS+Y L + +K + LI +S K+ + Sbjct: 1166 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1206 >gi|240144976|ref|ZP_04743577.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82] gi|257202969|gb|EEV01254.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82] Length = 1237 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 150/1016 (14%), Positives = 309/1016 (30%), Gaps = 146/1016 (14%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ----KFTPQKNIITQEINKKSPD 95 L+K + + + + + LS L +K + +++ + D Sbjct: 248 AKALEGDLEKYKEIAASESFADFYQNYRNLSYDRLASSRGFDGNEEKLELVKKLREMGKD 307 Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 +K+ + K + L + + K++ ++DF DL Sbjct: 308 AVKKINRQYFFTSPEIMAEQMKKTAPMAAELVRLTLEFDETFTAEKRRKNLVDFHDLEHF 367 Query: 156 TNDLLKKRDVSA--WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 ++ + + I+IDE QD++ +Q ++R+++ + Sbjct: 368 ALNIFVDEETGKVKKTAEEFRDNFKEIMIDEYQDSNEVQETILRAISRE-------ERGE 420 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 LF VGD KQSIY F A P+ + + K I+L +FRS ++L Sbjct: 421 YNLFMVGDVKQSIYRFRLARPELFMEKYDTYS----LTDAKMQRIDLHKNFRSRNEVLDF 476 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + Q T +++ Sbjct: 477 SNDIFYRIMKRNLGNVEYDADAALYPGASYQEETDMFTPEILLVDGDD---------ELL 527 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITF 391 D + + AR IA I ++GT + G+ R +Q D+++L+R Sbjct: 528 DDAAADDKKLLEARMIAKRIKELMGTQKVTDKATGELRPVQYSDMVILLRSLSG---YAD 584 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + ND I + ++ ++++ R + + D+ +L+SP+ S++ Sbjct: 585 RFAAVLNDAGIPAHTVSATGYFSTVEVQTVLSMLRILDNPRQDIPLTAVLRSPIAGLSDE 644 Query: 452 DIFKICTQRHE--------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497 ++ K+ + + E + + K +L + Sbjct: 645 ELAKLRLKDKNVRFYECVLEECERLKQEAEENPGQGRDDSEEKLYRFYVTYEKLRQLVPD 704 Query: 498 CSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556 H+ L+L + G+ L + + E SY L + +++ Sbjct: 705 TPIHELIELLLKETGYGDYAAAMPAGDRRHANLLMLVEKAIAYENTSYKGLFHFVRYIDE 764 Query: 557 YPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 N N VRIM++H +KGLE PVVF G ++ + P Sbjct: 765 LQKYDVDFGEADLIGENENVVRIMSIHKSKGLEFPVVFAAGMGKNFNRQDTRSRLVLHPE 824 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L + KS + K + E R+LYV +TRA ++LI+ + Sbjct: 825 LGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENLGEELRVLYVALTRAKEKLILTGSLKKA 884 Query: 672 NE----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 E + + + D + + + + +I+L + + Sbjct: 885 EETLSYIKAFPEELLSYLGRESAAGYLDWILPAAASCQDKYQIRLMRAAELVQEELETQI 944 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 + + Q+ ++ + + S + K + E+ Sbjct: 945 KDDWNRSACMEKAAQADEKKVQQFSERFHRRYAYENDVQRKNKYSVSELKHRAMREAFEK 1004 Query: 776 DNQT------------------------------FNRGLIIHKLLQVIFTLPEHKRKNFI 805 + + RG +H++++ K + Sbjct: 1005 EEEAVPVFQYEEVVPYVPAFAREIEQQSEDASPGALRGTAMHRIMECYQFSSGVSAKEQV 1064 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCP--- 858 K + + + + + Y E Sbjct: 1065 AGMLEKEQITPEMHGLIRIP-QVEYFVNADIGKRMGTAEKDGKLYREKPFVMGFTDEQLD 1123 Query: 859 ------------------------------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888 K+ +I G ID I + I + +YKT Sbjct: 1124 EFGFAENTEQAEKVKSMGRVGNIGETEYTGKELTLIQGIIDVFWIEKDGIVLLDYKTDRV 1183 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNK--------SLVCLLIY-VSEPKVFII 935 + + + AQL +YE+ L Y N+ + L+Y KV + Sbjct: 1184 --DTEKELSERYAAQLKLYEEALNRVYENEKDAAGNPLKVKEKLLYSFRIGKVIPV 1237 >gi|322391963|ref|ZP_08065427.1| exonuclease RexA [Streptococcus peroris ATCC 700780] gi|321145189|gb|EFX40586.1| exonuclease RexA [Streptococcus peroris ATCC 700780] Length = 1215 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 166/1033 (16%), Positives = 354/1033 (34%), Gaps = 142/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQ 60 K F ++ + E I ++LW + F ++ ++ + + + Sbjct: 225 KANFPIAKEKLAEAIKENLWDIEDFFRHHLDNDAKEFGKAAYLESVQQVLDEIISLTHES 284 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116 E+ +L K + + + +LKE + + ++ I + D+ Sbjct: 285 TFEQYQEVLERVVSISKDKGGRALTNASRKAELLELKEAYNQERKDKFEKLIALNDQITL 344 Query: 117 YKMFK-STLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 K + S LAK Y + K++ +F D+ T ++L+ Sbjct: 345 LKFQEKYHQESWDLAKTFQVFMSDFVDAYRKRKREENTFEFADISHYTIEILENFP---Q 401 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 +R + + + +++DE QDT+ IQ ++ L S+ F VGD KQSIY Sbjct: 402 VRQEYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGNNRFMVGDIKQSIYR 450 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F A+P+ + K ++ +I L +FRS++++L + VF L Sbjct: 451 FRQADPQIFNEKFHRFAK----NSEEGQLILLKENFRSSSEVLNATNDVFKH------LM 500 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 ++ I + G L + ++ + + + R Sbjct: 501 DEEVGEISYDGMHQLIFGNTDL-QANPENKAEVLLYDKDDDGDSDEEELATNKLTGEMRM 559 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I ++ + + KDI +L R + Y I V +D Sbjct: 560 VIKEILHLHND---------KGVPFKDIALLTAARSRNNQVLLALSE----YGIPVKTDD 606 Query: 409 RF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 L ++ ++ R I + D + V ++KSP+F+F ED++ ++ Q+ E ++ Sbjct: 607 AEKSYLQSLEVQVMLDTLRVIHNPLQDFALVALMKSPMFSFDEDELARLALQKSEDKSQE 666 Query: 468 EYIQKFANCG--------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + +K N K ++ + ++ S +D I + Sbjct: 667 NFYEKLVNAQENTGLQKNLITDELQKKLNFFMETVQTWRLFSKTHSLYDLIWKIYSERFY 726 Query: 514 RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----- 567 + G L + E++++ L I+ ++Q +K ++ Sbjct: 727 YDYVGALPNGQARQANLYALALRADQFEKSNFKGLSRFITMIDQV-LEVKHDLASVTVAP 785 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------ 615 + V +M++H +KGLE P VF+++ Q + ++ + Sbjct: 786 PKDAVELMSIHKSKGLEFPYVFILNIDQQFNKQDSMSEVILSRKNGLGLKYVARVATNAK 845 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK- 674 + + + + L+ ++ E RLLYV MTRA ++ + + + Sbjct: 846 EEYVPSTIKLSIPSLTYTQNEEELQLASYSELMRLLYVAMTRAEKKIYLVGKGSREKSEA 905 Query: 675 ------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW-- 714 SN + W +Y +F ++ ++ + + Sbjct: 906 KEYPTNGKGLLTRETRLDASNFQAWIWAIYQAFSKEDLHFSVRFEGEEELTKEAIGKLEN 965 Query: 715 --STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---- 768 + +TI++ + K + + IN P + PS + + Sbjct: 966 KSQLQDLSQADNRQSDTIREALQMLKEVEVYNQIHRAAINLPSVQTPSQLKKFYEPVMDM 1025 Query: 769 --------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808 S G H+L+Q I + + + Sbjct: 1026 EGVVVAGQSKPKETIIQFDLPDFSKTEKVTGAEIGSATHELMQRINLAKQPTLETLTEAL 1085 Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIII 864 + + A + K L I + + ++ Y E S + + ++D ++ Sbjct: 1086 --EQVQATSAVKDKVNLEKILSFFDTALGQEILANQDKLYREHPFSMLKRDSKSQEDFVV 1143 Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 G +D + + I +F+YKT H+ + + + QLS+Y + L SY + L Sbjct: 1144 RGILDGYLVYKDKIVLFDYKTDHY--EYPSQLIERYRGQLSLYAEALSRSYEIDKIEKYL 1201 Query: 925 IYV--SEPKVFII 935 I + +V + Sbjct: 1202 ILLGKDAVEVVEV 1214 >gi|259500614|ref|ZP_05743516.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335] gi|302191303|ref|ZP_07267557.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus iners AB-1] gi|259167998|gb|EEW52493.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335] Length = 1206 Score = 355 bits (910), Expect = 3e-95, Method: Composition-based stats. Identities = 154/942 (16%), Positives = 306/942 (32%), Gaps = 128/942 (13%) Query: 83 NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + + + L + +++ + K + + + Sbjct: 305 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+KN ++DF D+ +L ++ + R + + IL+DE QD + +Q ++I+ + Sbjct: 359 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 E LF VGD KQSIY F A+P L++ + I Sbjct: 419 KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 464 Query: 260 LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316 L +FRS+ ++ +V+ +F EN G++ +++ + +GT + S Sbjct: 465 LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 524 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373 D +E + D + + I + D + KR I+ Sbjct: 525 NDDKPSIADEEEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 574 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 DI +L R + + + K+ + +D + + + I + + Sbjct: 575 SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 630 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489 D+ V +++SPL+ F+E + KI + + Y+ I + + + I + Sbjct: 631 DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 689 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 + + + I + G + L+ E + + L Sbjct: 690 HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 749 Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I+ +++ + + + +++MT+H +KGLE P+VFL+ + Sbjct: 750 QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 809 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 I G+ I + + + S K EE R+LYVG+TRA +LI Sbjct: 810 NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 867 Query: 664 ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + N Q ++ + ++ L + ++ S E Sbjct: 868 MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDREL 927 Query: 722 T---------------------------------------------PLEREETIKQLMDE 736 P + T Sbjct: 928 DKEDKVHYIQVMQLKSQASVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 987 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794 +I K P + + ++N + ++ + L G +H LLQ Sbjct: 988 SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 1047 Query: 795 ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848 + I + +N +L A S + Y E Sbjct: 1048 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYRE 1105 Query: 849 VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895 + S N I++ G ID I I +F+YKT +E + Sbjct: 1106 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1165 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936 + + QLS+Y L + +K + LI +S K+ + Sbjct: 1166 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1206 >gi|325956899|ref|YP_004292311.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus acidophilus 30SC] gi|325333464|gb|ADZ07372.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus acidophilus 30SC] gi|327183678|gb|AEA32125.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1118] Length = 1206 Score = 355 bits (910), Expect = 3e-95, Method: Composition-based stats. Identities = 162/986 (16%), Positives = 302/986 (30%), Gaps = 129/986 (13%) Query: 46 ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105 L + + +E+ LL ++ + + +++ + DL++ +++ Sbjct: 253 DQNLQNFLAALDEDKPYDEQRDLLRLCTFNGRY-RKSSKWDEDLLEFYGDLQKLKDEAKS 311 Query: 106 EFIKIRDRFNTYKMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 + F + A L + + K+ ++D+ D+ Sbjct: 312 QVFDTFTAFFATDEKEQVKVMQDGQKIVAAIAQAEIALIERFNKLKRDEDLIDYSDMEQL 371 Query: 156 TNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 +L + S R + IL+DE QD + +Q +I+ + Sbjct: 372 AYRILSQDTSSSQMARDFYQSKFKEILVDEYQDINALQENIIQQV---------RQPGKN 422 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 TLF VGD KQSIY F AEP LR+ + I L +FRST + V Sbjct: 423 TLFMVGDVKQSIYGFRQAEPSLFLRKYHDFAQEQNEHE---ERILLSDNFRSTEPVTRTV 479 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + +F+ ++ D + + +V+ + + + + Sbjct: 480 NHLFNSILSSNFGGIDYQKEGQLVFGAKYYPSNLPKASEVIIHKKERGGDENSDKVDFSE 539 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + I + + G+ R ++ DI +L R D Sbjct: 540 I-----------QMVLARIKQLKEEHMQVFDSKSGQMREMKYSDIAILTRSHSD----NL 584 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 I + D + +M + I + + D+ V +L+SPLFNF E Sbjct: 585 EIMQEFAKQDIPLFVTDAENYFQTFELTVIMNYLKIIDNPDQDIPLVTVLRSPLFNFGEK 644 Query: 452 DIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 D+ KI + + + K + + + L A + I Sbjct: 645 DLAKIRIKSKNSSFYSALTSYVGVGDQLSDKCKDFLNQLASLREFATTHRISELIWSIYT 704 Query: 510 AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKR 563 + + G + L+ E + L + I+ + Q Sbjct: 705 RTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFINRMRQSQKDLAQPL 764 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 N VR+MT+H +KGLE P+VF + Q I D G+ + Sbjct: 765 LTKEAGNAVRLMTIHGSKGLEFPIVFYLGMHHQYQLRDLKGNYVI---NADGLGVTLREE 821 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR---T 680 + + + + K+ EE R+LYV +TRA +LI+ + ++K + Sbjct: 822 HYRIDSLVKAMGNITKKRQLLEEEARILYVALTRAKQKLIMVGDIPSFDKKVKDWSNELD 881 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER-------------- 726 + + + ++ D +A S + Sbjct: 882 HEGQLSLADKLAATTPLSFMGPALAFDRRVAIRISDITNSLDQSQPILFVDFSDDDAIAN 941 Query: 727 -------------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 E IK L + + P K+ I S I E+ Sbjct: 942 NAVNEEKGTRKDSEPEIKTLTETATKLYQFDYPFKDAIATTAYQAVSEIKKAFNDPDEAE 1001 Query: 774 LSDN-------------------------QTFNRGLIIHKLLQVIF---TLPEHKRKNFI 805 L ++ G H +LQ + + + I Sbjct: 1002 LENSHLLASTNRYLQPIDTKPSFLYQTKFTGAEIGTATHLILQYYDYTGDGSDEQLEQEI 1061 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVSG--------- 853 + K A +L + D EV S Sbjct: 1062 QHLIEQ--KKLNADIVSSLKKDQIEWFVHSDFAKDFWQRPEDLKREVDFSSLLSARTLFD 1119 Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEK 909 + P I++ G ID I I +F+YKT H ++ I + QL +YE+ Sbjct: 1120 DFSDPNAKILVHGTIDGYFIINNGIILFDYKTDHVDKSHLDEAIELIKEKYTGQLRLYER 1179 Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFII 935 L + K + LI + + + Sbjct: 1180 ALNEFSTKKVIGKYLILLDAKQAVEV 1205 >gi|296532162|ref|ZP_06894922.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC 49957] gi|296267510|gb|EFH13375.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC 49957] Length = 943 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 194/716 (27%), Positives = 334/716 (46%), Gaps = 32/716 (4%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT- 59 L+ R GL + L + S++ + +L ++GN + ++ Sbjct: 240 LRRRLGLP---REGGESEALLAMASAVDSEMVRAAALLRQSGNANDRDRGAVMKAWIDLS 296 Query: 60 -QCIEERFSLLSSFFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 R+ S FLT + +P+K++ T+ + ++ +++ + + + + Sbjct: 297 HAARAARWEEWCSIFLTAEGSPRKSLGTKGGLKERHEEVQALMAAEAERIHAFEEERKAW 356 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 ++ ++LA L LA+ + Y K + +DF+DLI LL + W+ YK+D + Sbjct: 357 RLHAASLALLALAQPVLEAYTARKARQGAVDFDDLIQAARGLLHDPGSA-WVLYKLDGGL 415 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP--RTLFAVGDEKQSIYSFHGAEPK 235 +H+L+DE QD++ QWE+ L E+FF G T R++FAVGDEKQSIY F GA+ Sbjct: 416 DHLLLDEAQDSNPHQWEIAARLAEEFFAGLGTREPESIRSIFAVGDEKQSIYGFQGADAA 475 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 R +R + T AG +F+ + L +SFRSTA +L +VD VF+ +G+ + + + Sbjct: 476 GFARWERHFEGAVTAAGAEFAAVPLNVSFRSTAPVLALVDAVFADGPARRGVVAEGS-VL 534 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 HR+ R GQ G V++W + + P W + + ++ + +++A +A I+ Sbjct: 535 THRADREGQAGMVEIWPLLTRPDSAALQP----WEVPEEPVAEDDAEALMAESLAARIAQ 590 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 M+ + + + G R I+ DILVL+R+R + L ++V G DR L + Sbjct: 591 MVREERLPARGD-RPIRPGDILVLLRRRTG---FSNLLVRALKARGVAVGGVDRMQLVEQ 646 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 +A++DL+AL +L EDDL +LKSPL N SE ++ ++ R + + ++ Sbjct: 647 IAVQDLLALCDVLLLPEDDLQLAAVLKSPLCNVSETELCELARARTQPLWWRLLEMRGSD 706 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535 + +++ L A +PH +LG GR + + R G + D LDE LN Sbjct: 707 SNAGR---AAEWLAGLADRADLATPHTILAEVLGEHGGRARILERLGPDAADPLDEMLNA 763 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L EQ SLQ + L + ++R + + VR+MT H AKGL++PVV + D GS Sbjct: 764 ALTYEQRHPPSLQGFVQWLRRGGAEVRREAESGADAVRLMTAHGAKGLQAPVVIIPDVGS 823 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +K + + L+ + + E NRLLYV + Sbjct: 824 G-----RGEKPLRWEESAPPLPYWAPRSRKDFFAPAWTKLMDAETAAREAEENRLLYVAL 878 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 TRA D+L++C + +WYD+V E + I + A Sbjct: 879 TRAEDRLLVCAWGAPK------EGSWYDLVSQGIGRLEGAEDIPFEPAGFGAPPSA 928 >gi|329920276|ref|ZP_08277060.1| ATP-dependent nuclease subunit A [Lactobacillus iners SPIN 1401G] gi|328936321|gb|EGG32769.1| ATP-dependent nuclease subunit A [Lactobacillus iners SPIN 1401G] Length = 997 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 154/942 (16%), Positives = 305/942 (32%), Gaps = 128/942 (13%) Query: 83 NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + + + L + +++ + K + + + Sbjct: 96 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 149 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+KN ++DF D+ +L ++ + R + + IL+DE QD + +Q ++I+ + Sbjct: 150 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 209 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 E LF VGD KQSIY F A+P L++ + I Sbjct: 210 KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 255 Query: 260 LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316 L +FRS+ ++ +V+ +F EN G++ +++ + +GT + S Sbjct: 256 LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 315 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373 D +E + D + + I + D + KR I+ Sbjct: 316 NDDKPSIADEEEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 365 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 DI +L R + + + K+ + +D + + + I + + Sbjct: 366 SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 421 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489 D+ V +++SPL+ F+E + KI + + Y+ I + + + I + Sbjct: 422 DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 480 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 + + + I + G + L+ E + + L Sbjct: 481 HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 540 Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I+ +++ + + + +++MT+H +KGLE P+VFL+ + Sbjct: 541 QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 600 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 I G+ I + + + S K EE R+LYVG+TRA +LI Sbjct: 601 NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 658 Query: 664 ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + N Q ++ + ++ L + + S E Sbjct: 659 MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDREL 718 Query: 722 T---------------------------------------------PLEREETIKQLMDE 736 P + T Sbjct: 719 DKEDKVHYIQVMQLKSQASVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 778 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794 +I K P + + ++N + ++ + L G +H LLQ Sbjct: 779 SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 838 Query: 795 ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848 + I + +N +L A S + Y E Sbjct: 839 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYRE 896 Query: 849 VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895 + S N I++ G ID I I +F+YKT +E + Sbjct: 897 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 956 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936 + + QLS+Y L + +K + LI +S K+ + Sbjct: 957 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 997 >gi|325912627|ref|ZP_08175010.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B] gi|325478048|gb|EGC81177.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B] Length = 1206 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 154/942 (16%), Positives = 307/942 (32%), Gaps = 128/942 (13%) Query: 83 NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + + + L + +++ + K + + + Sbjct: 305 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+KN ++DF D+ +L ++ + R + + IL+DE QD + +Q ++I+ + Sbjct: 359 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 E LF VGD KQSIY F A+P L++ + I Sbjct: 419 KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 464 Query: 260 LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316 L +FRS+ ++ +V+ +F EN G++ +++ + +GT + S Sbjct: 465 LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 524 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373 D +E + D + + I + D + KR I+ Sbjct: 525 NDDKPSIADEEEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 574 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 DI +L R + + + K+ + +D + + + I + + Sbjct: 575 SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 630 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489 D+ V +++SPL+ F+E + KI + + Y+ I + + + I + Sbjct: 631 DIPLVSVMRSPLYGFTEPEFAKIGIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 689 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 + + + I + G + L+ E + + L Sbjct: 690 HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 749 Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I+ +++ + + + +++MT+H +KGLE P+VFL+ + Sbjct: 750 QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 809 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 I G+ I + + + S K EE R+LYVG+TRA +LI Sbjct: 810 NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 867 Query: 664 ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + N Q ++ + ++ L + ++ S E Sbjct: 868 MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDREL 927 Query: 722 T---------------------------------------------PLEREETIKQLMDE 736 P + T Sbjct: 928 DKEDKVHYIQVMQLKSQASVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 987 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794 +I K P + + ++N + ++ + L G +H LLQ Sbjct: 988 SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 1047 Query: 795 ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848 + I + +N +L + A S + Y E Sbjct: 1048 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKNDINWFVTSNFAKAFWEKSDNLYRE 1105 Query: 849 VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895 + S N I++ G ID I I +F+YKT +E + Sbjct: 1106 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1165 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936 + + QLS+Y L + +K + LI +S K+ + Sbjct: 1166 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1206 >gi|312875638|ref|ZP_07735639.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b] gi|311088892|gb|EFQ47335.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b] Length = 1206 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 155/942 (16%), Positives = 304/942 (32%), Gaps = 128/942 (13%) Query: 83 NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + + + L + +++ + K + + + Sbjct: 305 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358 Query: 141 KKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+KN ++DF D+ +L + S R + + IL+DE QD + +Q ++I+ + Sbjct: 359 KRKNNIIDFNDMEQFAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 E LF VGD KQSIY F A+P L++ + I Sbjct: 419 KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 464 Query: 260 LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316 L +FRS+ ++ +V+ +F EN G++ +++ + +GT + S Sbjct: 465 LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 524 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373 D +E + D + + I + D + KR I+ Sbjct: 525 NDDKPSITDEEEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 574 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 DI +L R + + + K+ + +D + + + I + + Sbjct: 575 SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 630 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489 D+ V +++SPL+ F+E + KI + + Y+ I + + + I + Sbjct: 631 DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 689 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 + + + I + G + L+ E + + L Sbjct: 690 HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 749 Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I+ +++ + + + +++MT+H +KGLE P+VFL+ + Sbjct: 750 QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 809 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 I G+ I + + + S K EE R+LYVG+TRA +LI Sbjct: 810 NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 867 Query: 664 ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + N Q ++ + ++ L + + S E Sbjct: 868 MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDREL 927 Query: 722 T---------------------------------------------PLEREETIKQLMDE 736 P + T Sbjct: 928 DKEDKVHYIQVMQLKSQASVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 987 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794 +I K P + + ++N + ++ + L G +H LLQ Sbjct: 988 SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 1047 Query: 795 ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848 + I + +N +L A S + Y E Sbjct: 1048 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYRE 1105 Query: 849 VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895 + S N I++ G ID I I +F+YKT +E + Sbjct: 1106 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1165 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936 + + QLS+Y L + +K + LI +S K+ + Sbjct: 1166 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1206 >gi|113868365|ref|YP_726854.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia eutropha H16] gi|113527141|emb|CAJ93486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia eutropha H16] Length = 1200 Score = 353 bits (906), Expect = 7e-95, Method: Composition-based stats. Identities = 175/1003 (17%), Positives = 335/1003 (33%), Gaps = 105/1003 (10%) Query: 1 LKNRFGLSL--NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58 L + G + + + + W ++ + +T I + + Sbjct: 231 LSDCLGEDARGDVLLQALSDEGWRDACESLALRLGAAGKTEQTHAARITDALMAITAWRE 290 Query: 59 TQ-----CIEERFSLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIKIR 111 E F+ L + F T P+ T + K + + + L + Sbjct: 291 AGAAPGKPAERAFAQLRAAFFTTTGGPRSLRRTAALVKAAGGEGMVDALLDEHASICAML 350 Query: 112 DRFNT----YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 D + + A + L Y+ K + +DF DL L+ + + Sbjct: 351 DDISARCCEAAVLAINRALFCIGDALLTRYQRHKDEQRAMDFADLEWQAARLMSDEETAT 410 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 +++ ++D H+L+DE QDT+ +QW ++ + + G T+F VGD KQSIY Sbjct: 411 YLQVRLDARYRHLLLDEFQDTNPLQWRIL----QGWLAGYAGLGERPTVFLVGDPKQSIY 466 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F A+ + + + + + A++L V+ VF Sbjct: 467 RFRRADARLFGAAGEMLRDTFGATVLRTNRTRRN-----RAEVLDWVNAVFDTARAEGRY 521 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ--------- 338 +T T G G V L V + ++ + ++ Sbjct: 522 PLYATQTTAL----AGGNGPVWLLPLVEPEDKAEDAVDDGAEDKSAEAASAHRDTLLQPR 577 Query: 339 ----ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 +S RR+A + + T + G++R + D+ +LVR++ R Sbjct: 578 RQAGDSLRLEEGRRVAAWLRLVRDTVPVHEGGEQRPARWSDMHLLVRRKTHLADYERALR 637 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 I + R L L DL AL F+++ E DL +LKSPL S+DD+ Sbjct: 638 E----AGIPCLSPRRGGLLATLEALDLSALLAFLMTPESDLDLAHVLKSPLVGASDDDLL 693 Query: 455 KICTQRHETETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + E + ++ + + + +A HD I + Sbjct: 694 ALARIEGEGGWWARIESGGLPEHVSDALREGVQRLRQWLRVAPHRPVHDLIDQIFHGGEV 753 Query: 514 RQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569 R+++ +V+ LD FL +L + Y SL + I EL++ + Sbjct: 754 RRRYAEAAPPDIREQVLANLDAFLKLSLDLDGGRYPSLPKFIDELQEIRRGDEGESPDEG 813 Query: 570 ---------------------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 + V I+TVH AKGLE+P V L+D + + Sbjct: 814 GMGESAEDVEPAEDDSAFAGLDAVHILTVHAAKGLEAPFVVLLDANHSEPAADRGGILVD 873 Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 P + P + R + L + + E LLYV MTRA L++ Sbjct: 874 WPPSSPVPRHFSAYGKRSERGLARAPLFEAEAALGERENWNLLYVAMTRAQQGLLVSGVK 933 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 ++ S + ++L + + AY E + + Sbjct: 934 GRASRSGSGE---------GNAEIAGSWYVRLQAAGVGEMVPAYP-----GELADAQDQA 979 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788 + + E ++ ++ + + ++ + G ++H Sbjct: 980 PMPARLSEPVRFTDFRLRYRDAVDARQGIGFEEEGEAEDEP-DGIVFNAAAARHGELVHA 1038 Query: 789 LLQVIFTLPEHKRK----NFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 LL+ + PE + + + T A+ ++ L ++ +L P + Sbjct: 1039 LLERLTRYPEAFAGVPGIDTVLRWFPLTGAHTGAARQAWRQQVAQALEAVAAMLRAPALA 1098 Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 + ++ + ++ RID++ + I +YK +PQE E Sbjct: 1099 PLLGAGDARSARNEVELYDARGRLL---RIDRLVEFDDRVVIVDYKL-RLLPQEHE---- 1150 Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 + AQL Y L +P K + V+ IP +L Sbjct: 1151 AYRAQLGRYAAALAPMFPGKRIEAG---VATADGEWIPAERLA 1190 >gi|291538110|emb|CBL11221.1| recombination helicase AddA, Firmicutes type [Roseburia intestinalis XB6B4] Length = 1237 Score = 353 bits (905), Expect = 9e-95, Method: Composition-based stats. Identities = 151/1016 (14%), Positives = 310/1016 (30%), Gaps = 146/1016 (14%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ----KFTPQKNIITQEINKKSPD 95 LKK + + + + + LS L +K + +++ + D Sbjct: 248 AKALEGDLKKYKEIAASESFADFYQNYRNLSYDRLASSRGFDGNEEKLELVKKLREMGKD 307 Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 +K+ + K + L + + K++ ++DF DL Sbjct: 308 AVKKINRQYFFTSPEIMAEQMKKTAPMAAELVRLTLEFDETFTAEKRRKNLVDFHDLEHF 367 Query: 156 TNDLLKKRDVSA--WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 ++ + + I+IDE QD++ +Q ++R+++ + Sbjct: 368 ALNIFVDEETGKIKKTAEEFRDNFKEIMIDEYQDSNEVQETILRAISRE-------ERGE 420 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 LF VGD KQSIY F A P+ + + K I+L +FRS ++L Sbjct: 421 YNLFMVGDVKQSIYRFRLARPELFMEKYDTYS----LTDAKMQRIDLHKNFRSRNEVLDF 476 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + Q T +++ Sbjct: 477 SNDIFYRIMKRDLGNVEYDADAALYPGASYQEETDMFTPEILLVDGDD---------ELL 527 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITF 391 D + + AR IA I ++GT + G+ R +Q D+++L+R Sbjct: 528 DDAAADDKKLLEARMIAKRIKELMGTQKVTDKATGELRPVQYSDMVILLRSLSG---YAD 584 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + ND I + ++ ++++ R + + D+ +L+SP+ S++ Sbjct: 585 RFAVVLNDAGIPAHTVSATGYFSTVEVQTVLSMLRILDNPRQDIPLTAVLRSPIAGLSDE 644 Query: 452 DIFKICTQRHE--------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497 ++ K+ + + + E + + K +L + Sbjct: 645 ELAKLRLKDKDVRFYECVLEECERLKQEAEENPGQGRDDSEEKLYRFYVTYEKLRQLVPD 704 Query: 498 CSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556 H+ L+L + G+ L + + E SY L + +++ Sbjct: 705 TPIHELIELLLKETGYGDYAAAMPAGDRRHANLLMLVEKAIAYENTSYKGLFHFVRYIDE 764 Query: 557 YPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 N N VRIM++H +KGLE PVVF G ++ + P Sbjct: 765 LQKYDVDFGEADLIGENENVVRIMSIHKSKGLEFPVVFAAGMGKNFNRQDTRSRLVLHPE 824 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L + KS + K + E R+LYV +TRA ++LI+ + Sbjct: 825 LGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENLGEELRVLYVALTRAKEKLILTGSLKKA 884 Query: 672 NE----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 E + + + D + + + + +I+L + + Sbjct: 885 EETLSYIKAFPEELLSYLGRESAAGYLDWILPAAASYQDKYQIRLMRAAELVQEELETQI 944 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 + + Q+ ++ + + S + K + E+ Sbjct: 945 KDDWNRSACMEKAAQADEKKVQQFSERFHRRYAYENDVQRKNKYSVSELKHRAMREAFEK 1004 Query: 776 DNQT------------------------------FNRGLIIHKLLQVIFTLPEHKRKNFI 805 + + RG +H++++ K + Sbjct: 1005 EEEAVPVFQSEEVVPYVPAFAREIEQQSEDASPGALRGTAMHRIMECYQFSSGVSAKEQV 1064 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCP--- 858 K + + + + + Y E Sbjct: 1065 AGMLEKEQITPEMHGLIRIP-QVEYFVNADIGKRMGAAEKDGKLYREKPFVMGFTDEQLD 1123 Query: 859 ------------------------------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888 K+ +I G ID I + I + +YKT Sbjct: 1124 EFGFAENTEQAEKVKSMGRVGNIGETEYTGKELTLIQGIIDVFWIEKDGIVLLDYKTDRV 1183 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNK--------SLVCLLIY-VSEPKVFII 935 + + + AQL +YE+ L Y N+ + L+Y KV + Sbjct: 1184 --DTEKELSERYAAQLKLYEEALNRVYENEKDAAGNPLKVKEKLLYSFRLGKVIPV 1237 >gi|73663117|ref|YP_301898.1| putative ATP-dependent nuclease subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642147|sp|Q49WA6|ADDA_STAS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|72495632|dbj|BAE18953.1| putative ATP-dependent nuclease subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1219 Score = 353 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 143/998 (14%), Positives = 319/998 (31%), Gaps = 137/998 (13%) Query: 32 NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91 ++++ +ME G K A+ ++ ++ + ++ Sbjct: 258 RRFLAEAMEGGLLNTQKIAEHQFESRFPAKNKKIKEA-------NEMMIDAYDDGKKHYD 310 Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151 L K+++ + + ++ + + + + K+ +LDF D Sbjct: 311 DYKALVSKVQEDYFSREAADLKTDMQRLAPRVAYLAQVTADVIEQFNQKKRSRNLLDFSD 370 Query: 152 LIINTNDLLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 +L + I ++ IL+DE QDT+ +Q ++I + Sbjct: 371 YEHFALRILMDSNGNPSEIADMYRKQFEEILVDEYQDTNRVQEKIIACIKR-------GD 423 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + LF VGD KQSIY F A+P + + + G I+L +FRS ++ Sbjct: 424 EADGNLFMVGDVKQSIYKFRQADPSLFIGKYNRFTLDGSEHG---MRIDLSQNFRSREEV 480 Query: 271 LTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 LT + +F E + D + + + + VQL + Sbjct: 481 LTTTNYLFKHMMDEAVGEIVYDDAAQLYYGAPFDHKPHDVQLNMLIE------------- 527 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDT 386 D+ + + A I + ++ I+ + R KDI++L R Sbjct: 528 -----DASSDLNGSEQEAEYIVQQVEKIMSQHEIYDIKTEQYRKPSYKDIVILERSYGQA 582 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 I + D+ I N + + ++ +++ R I + D+ V +++S ++ Sbjct: 583 RKIQQAFK----DHNIPFHVNSKEGYFEQTEVQLILSFLRTIDNPLQDIYLVGLMRSVIY 638 Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSP 500 F+ED++ I + Y+ I+ + ++ K ++ I + +Q Sbjct: 639 QFTEDELSNIRVFSPNDDYFYQSIKHYMANDVANKKLVAKLASFLEDIEQYQDYSQSHPV 698 Query: 501 HDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 + Q F G + L N + E +S+ L + I +++ Sbjct: 699 YQLIDKFYNDHYVIQYFSGIIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFIDELIE 758 Query: 560 TIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 K N + VR+MT+H++KGLE P V + + + + S Sbjct: 759 RGKDFGEENIVGPNDDVVRMMTIHSSKGLEFPFVIYSGLSRKFRRDDLHRPVILNQSYGL 818 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + +K E RL+YV +TRA +QL + Sbjct: 819 GMAYYDVESNLSYPSLSSVTYKAIAEKEMVSEEMRLIYVALTRAKEQLFLIGRVKDEKTL 878 Query: 675 KSNQR--------------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 ++ + + + +++ +I + + Sbjct: 879 SQFEQVSVSESHLPVSYRITAQRPIDMIYPILAKYQSSSLPNELRFEQTIEDVDQAMRPY 938 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKK-------------------LFSPIKNDINEPY 755 + + ET+ + +++ + P ++ I +P Sbjct: 939 VQLNTDFYEDIASETVTDVSEQRTVADIEMNHSKNEALQAQIHNQLSYEYPYQSAIEKPS 998 Query: 756 ILNPSTID-----------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQV 792 + S + + + S + G ++H ++Q Sbjct: 999 KQSVSELKRQHETEQSDTNYDRVRQYRIGSTSYERPAFLSRSKQRKANEIGTLMHTVMQH 1058 Query: 793 IFTLPEHKRKNFITSYCTKNA--KLWPAKEYKNLL-LSITRLLENPMMTTAM-SCDSYSE 848 + + + + + P +++ I + + + S + Y E Sbjct: 1059 LPFNKDRLTEEDVNRLVDHLIAQHIIPEDAKQDIRFDDIYNFIASDLYQLIAESDEIYRE 1118 Query: 849 VSVSGKIN-------CPKKDIIISGRIDQISISQQNIFIFEYKTH-----HHVPQEI--E 894 + N + II G ID I + + + +YKT ++ E Sbjct: 1119 LPFVVNQNEVDHNKHSEEDASIIQGMIDLIFVKEGQYYFVDYKTDAFNRRRNMSDEEIGA 1178 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + + Q++ Y L+ + L + ++ Sbjct: 1179 QLRERYKVQMNHYRNTLETILKTD-VKGFLYFFKFGQL 1215 >gi|229825742|ref|ZP_04451811.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC 49176] gi|229790305|gb|EEP26419.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC 49176] Length = 1183 Score = 353 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 150/930 (16%), Positives = 301/930 (32%), Gaps = 102/930 (10%) Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK--MFKSTLASLTLAKY 132 T +K + + I + KLK+ D + + + + L + Sbjct: 290 TVDVDEEKKELAKSIRDGYKESFNKLKE--DFLSENVEEIEASRKVTAGVLKELIRLVRK 347 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLI 191 + Y E K K +LD D +L + + K ++ I+IDE QD++L+ Sbjct: 348 FDKAYIEEKNKRNMLDISDWAHLALKVLLDEEGKPSVAAKAYKEQFAEIMIDEYQDSNLL 407 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q +++ S++ + +F VGD KQSIY F A+P+ + + +R Sbjct: 408 QEKILTSISREA-------DGQPNIFMVGDVKQSIYKFRQAKPELFIEKYNKYSQR---- 456 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 K I+L +FRS +++ V+ VF R R ++ Sbjct: 457 -NKGKRIDLHSNFRSGPEVIDSVNAVFERTMTESLGGIVYDEAARLVKGRDDKLQNELNK 515 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 +++ S P+ L + S + A +A I ++ + Sbjct: 516 TEILLFDKSNEIPE---------ELLKLSDIELEAYMVAGRIKRLMVEKE--------GL 558 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +I +L+R + R + I + ++ +++L + + + Sbjct: 559 KYSNIAILLRTNVEWA---ESFRRILISEGIPAICESSVGYFSAWEVQVMISLLKILDNP 615 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491 DL +L SP+ F E ++ ++ ++ E ++ K I + +E Sbjct: 616 HQDLPLGTVLLSPIGGFDEQELAELRINSNKDEDLWTI---LNLSENEKSLKFINWFNEQ 672 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550 F H+ + + G LD + E S + Sbjct: 673 RSKLIFTPVHELIKELYEESNFYSYVRAMPSGETRAANLDMLVYKAKAYEATSLHGVVHF 732 Query: 551 ISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + +++ Y A + VRI+++H +KGL+ PVVF+ + + M Sbjct: 733 VRYIDKLRKYEVDFGEAGAGGAEAVRILSIHKSKGLQYPVVFVSGMAKSMNNQDSRASMV 792 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 I L + K + L ++ E RLLYV MTRA D+L++ Sbjct: 793 IQAELGIGIDYFNIETREKKTTILKKMLAGKIRLENVAEEIRLLYVAMTRAEDKLLLTAG 852 Query: 668 SNTSNEKKSNQRTWYD------------------------------MVYDSFHNDERVKK 697 +K + V + + Sbjct: 853 LEDVEDKLVSWEHDEQGYMSLSKANSLLDFAMPALIKEKNEGRLTIAVQCAKELVDSKMD 912 Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 + + + S P+ +E ++ + + K ++E L Sbjct: 913 EAAEKEVLESDITKLISSLPEPDGYEAIKEMISREKDYIYPFKEAVELKSKMTVSEIKRL 972 Query: 758 ---------NPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHK 800 + K E + + RG + H +L + Sbjct: 973 HLEEEEIGEAVYNLPHKEAPEFEPYIPDFMSKEPEETKGAARGTLYHSILSRMDFGNISG 1032 Query: 801 RKNFIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT----AMSCDSYSEVSVS-- 852 ++ F + + K+ + L + E+ + ++ Y E Sbjct: 1033 KETFKDYIAKLNIDKKITNEELSSIDLRHFAKFFESNLYKRMRQAFLNSKLYREAPFVIG 1092 Query: 853 --GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEK 909 +IN K+ +++ G ID +++ + +YKT Q E + + QL Y + Sbjct: 1093 IDREINTEKETVLVQGIIDAWFTENEDVILVDYKTDRVYGKQGEEELIRRYKLQLDNYAE 1152 Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 L L+ + K +I K Sbjct: 1153 ALSRITGKMPKEKLIYSFALGKEILIEDEK 1182 >gi|306833181|ref|ZP_07466311.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338] gi|304424755|gb|EFM27891.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338] Length = 1210 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 152/1001 (15%), Positives = 329/1001 (32%), Gaps = 138/1001 (13%) Query: 26 FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85 V+D+ Y + G PT + L + + F L + + Sbjct: 255 QDVTDLEDYKQKT-AKGTPTA-NYKKHLNIIEHLREWAQHFETLYG----RDGLGRLATD 308 Query: 86 TQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNA 135 ++ P + K Q ++ +K +L L + + Sbjct: 309 VAKLLPAGPAVTVAGTKYPVFKTLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSE 368 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y +AK + +F D+ +L++ A IR + + +++DE QD + Q + Sbjct: 369 QYLQAKIQENAFEFSDIAHFAIQILEEN---ADIRELYQNKYHEVMVDEYQDNNHTQERM 425 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 + L S+ F VGD KQSIY F A+P+ ++ + Q+ + Sbjct: 426 LELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPDH----G 470 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 +I L +FRS +++L + +F+ + T + + Q E Sbjct: 471 KLILLKENFRSQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVAGSPAQK------ESHP 524 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 ++ + + + +A I + + + +D Sbjct: 525 ENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVAKEIIRLHNEEH---------VAFED 575 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDD 434 I +LV R Y I V + + ++ R + + +D Sbjct: 576 ITLLVSSRTR----NDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLND 631 Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--------------ISK 480 + V +++SP+F+F+ED++ ++ Q E + QK + K Sbjct: 632 YALVALMRSPMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELMTITLHDK 691 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539 + A++ + +D I + + + L Sbjct: 692 LADFMACFVAWREFAKWHALYDLIWKIYNDRFYYDYVGNLPRAEQRQANLYALALRANNF 751 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGS 595 E+ + L I +++ + N V +MT+H +KGLE VF+++ Sbjct: 752 ERTGFKGLSRFICMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLEFKYVFILNIDK 811 Query: 596 QVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 + + + + + + L+ +T Sbjct: 812 KFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVSMDTLPYQLNKRELRLATL 871 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDS 688 E RL YV MTRA +L + +++ ++ N T+ D V Sbjct: 872 SEQMRLFYVAMTRAEKKLYLVGKASSEKLVDKYSGKSENDHLPVAERENFMTFQDWVLAI 931 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWS-------THHPENTPLEREETIKQLMDEQKIPK 741 + + + + +++ + + T + E I + +D + + Sbjct: 932 YEAYSKENLPFAVDFVTEEDLTDDKIGKIEVTSVITPDDLTDNRQSENITEALDRLEAVE 991 Query: 742 KLFSPIKNDINEPYILNPSTI----------------------DTKGKTNLESLLSDNQT 779 KL + IN P + PS + + S + + Sbjct: 992 KLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFELPDFSKKAKIEA 1051 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839 G +H+L+Q I + + + +A+ + + L ++ EN + Sbjct: 1052 TAIGSAMHELMQRIPLSKQVTIADITAALAQVSAE--DEVKARIRLENVLAFFENSELGQ 1109 Query: 840 AMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + + Y E + + K+ ++ G +D + I +F+YKT + + E Sbjct: 1110 LIQQHTDKIYREAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKY--KNSE 1167 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I + Q+++Y + L SY K++ L+ + ++ ++ Sbjct: 1168 EIKERYQGQMALYAEALSKSYDRKNVDKYLVLLGGEQLEVV 1208 >gi|238916498|ref|YP_002930015.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] gi|238871858|gb|ACR71568.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] Length = 1220 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 149/948 (15%), Positives = 296/948 (31%), Gaps = 127/948 (13%) Query: 79 TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138 P + K D +L + L +AK Sbjct: 289 DPDIKEYVKGQRKLFKDYIGRLNDKIFLKDDEGIFADMQGAGIQIRTLLKVAKVYAKRVS 348 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWE 194 E K++ ++DF D+ +L K++ + K+ ILIDE QD++ +Q Sbjct: 349 EVKREKGIIDFNDMEHLALSILVKKEDGKLVYTETADKLANRFEEILIDEYQDSNQLQEV 408 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 ++ ++++ G+ ++ VGD KQSIY F A P+ + + + N Sbjct: 409 ILNAVSKTRLSGE-----NNNIYMVGDVKQSIYKFRLACPELFIEKYDTYGETGDNV--- 460 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314 IEL +FRS ++L + VFS N ++R + E Sbjct: 461 --RIELQKNFRSRENVLECANDVFSHIMNKNFSGIGYDESVRLNAGFP-------YPEYS 511 Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD---TIFSNGKKRVI 371 S + + N + ++ + ++ + A R+A I ++ + R Sbjct: 512 DSNYGDEANKSTDVILISSENEEEATTRELEADRLAKLIEGIVSSGVNVYDADENIYRPA 571 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +DI++L R D I + I+ ++++ + + Sbjct: 572 EYRDIVILTRSVTGWA---DTFADALMDRGIPAYTDSSTGYFSVREIQVILSMLTIVDNP 628 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI------CTQRHETETVYEYIQKFA----------- 474 ++S + S F+ ++ + ++ +YE+++ A Sbjct: 629 VQEISLAAAMMSYFGGFTAAELGMVRKLGREHADKNTHNNLYEHLKAVAVLGGAGKMQES 688 Query: 475 --NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDE 531 K + + E + S +D ++ G + L+ Sbjct: 689 DVKQLSGKCALFLAKLTEYRDKSSVESLYDLCWEMIYDSGYYDYVGTMPAGAQRQANLNV 748 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESP 586 L ++SYS L + +E+ + N N VRIM++H +KGLE P Sbjct: 749 LLERAAGYGKSSYSGLFNFLRYIERLKKFDEDFAEGAASLDNENLVRIMSIHKSKGLEFP 808 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V L + + + +L ++K+ I + + + + + E Sbjct: 809 IVILAGAHKSINFMDATAPVLVDQNLGIAVDYVDLERRTKTPTIIKGAMARRIVRESIAE 868 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEK---------------------KSNQRTWYDMV 685 RLLYV MTRA ++LII +++ N + + DM+ Sbjct: 869 EERLLYVAMTRAREKLIITGVVKDADKTLDKYMGRAEQLAADGMLSFADSENIKNYLDMI 928 Query: 686 YDSFHNDERVKKIKL---TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 D K ++ A+E E + E + M+ P Sbjct: 929 MPVCLMDSDKLKGSFKVMVDAGEDSWVDAFEAGEMAGEANAVRIGELADENMEAVSYPLL 988 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF---------------------- 780 P + T+ + +N Sbjct: 989 DELPEYVPDDNAARRMKLTVSQLKAMQADDDSEENAYMDESVKTALKKEACDETNSIIPK 1048 Query: 781 ------------NRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 RG H++++ + ++ K I + K++ Sbjct: 1049 FISGEEVQLAANERGSAYHRVMECLDYSVSVNLDGVKADINRMLET--GKMNELQVKSVN 1106 Query: 826 LS-ITRLLENPMMTTAMSC----DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880 I +++ + E + +I G ID + Sbjct: 1107 PWDINTFVQSDTGRRVANAVNCGSVRREQPFV----FEYEGQLIQGIIDLYFEEDGEFVL 1162 Query: 881 FEYKTHHHVPQE--IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 +YKT + E + + + QL Y K L K + +IY Sbjct: 1163 VDYKTDRVMKGEAGEKELVRRYAIQLDYYAKALTQL-TGKKVKEKIIY 1209 >gi|309803999|ref|ZP_07698081.1| ATP-dependent nuclease subunit A [Lactobacillus iners LactinV 11V1-d] gi|308163918|gb|EFO66183.1| ATP-dependent nuclease subunit A [Lactobacillus iners LactinV 11V1-d] Length = 1144 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 154/942 (16%), Positives = 304/942 (32%), Gaps = 128/942 (13%) Query: 83 NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + + + L + +++ + K + + + Sbjct: 243 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 296 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K+KN ++DF D+ +L ++ + R + + IL+DE QD + +Q ++I+ + Sbjct: 297 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 356 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 E LF VGD KQSIY F A+P L++ + I Sbjct: 357 KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 402 Query: 260 LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316 L +FRS+ ++ +V+ +F EN G++ +++ + +GT + S Sbjct: 403 LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 462 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373 D +E + D + + I + D + KR I+ Sbjct: 463 NDDKPSIADEEEEVNNLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 512 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 DI +L R + + + K+ + +D + + + I + + Sbjct: 513 SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 568 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489 D+ V +++SPL+ F+E + KI + + Y+ I + + + I + Sbjct: 569 DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 627 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 + + + I + G + L+ E + + L Sbjct: 628 HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 687 Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I+ +++ + + + +++MT+H +KGLE P+VFL+ + Sbjct: 688 QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 747 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 I G+ I + + + S K EE R+LYVG+TRA +LI Sbjct: 748 NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 805 Query: 664 ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + N Q ++ + ++ L + + S E Sbjct: 806 MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDREL 865 Query: 722 T---------------------------------------------PLEREETIKQLMDE 736 P + T Sbjct: 866 DKEDKVHYIQVMQLKSQASVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 925 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794 +I K P + + ++N + ++ + L G +H LLQ Sbjct: 926 SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 985 Query: 795 ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848 I + +N +L A S + Y E Sbjct: 986 YTIEYSPTNVDYLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWGKSDNLYRE 1043 Query: 849 VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895 + S N I++ G ID I I +F+YKT +E + Sbjct: 1044 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1103 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936 + + QLS+Y L + +K + LI +S K+ + Sbjct: 1104 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1144 >gi|329667337|gb|AEB93285.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii DPC 6026] Length = 1142 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 158/981 (16%), Positives = 307/981 (31%), Gaps = 126/981 (12%) Query: 52 TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----------DLKEKLK 101 L+Q + ++ + + + KF + + DL ++LK Sbjct: 192 RLEQFLNALEDDHSYNEIRASLMNCKFEKNIRKSKKWSEESLETYQESQKLKSDLNDQLK 251 Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKKNCVLDFEDLIINTND 158 K F + ++ + KS T+ L + + K++ ++D+ D+ Sbjct: 252 KIFANFFVVEEKEQVNILKKSEKLVKTIVDAEKKLIKRFGQLKREQNLIDYSDMEQFAFS 311 Query: 159 LLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 +L +A I + ++ N ILIDE QD + +Q +I ++ LF Sbjct: 312 ILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIAAI---------KKKGQNNLF 362 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F A P L + I L +FRST + V+ + Sbjct: 363 MVGDIKQSIYGFRQARPDLFLSKYHAY-----GQNDDSEKIVLSDNFRSTKRVTKTVNSL 417 Query: 278 FSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 F+ N G+ ++ ++ + + ++ + F+ Sbjct: 418 FNPILTANFGGIDYKKEGQLQFGATY---------YPTDLPTASEYIFTDKKQTQASFEE 468 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFL 392 + + + I + + + K +R ++ DI ++ R R D Sbjct: 469 NFGDEMDFSEIQMVIARIKQLKEENFQVWDRKTQLRRPLEYSDIAIITRTRSD----NLQ 524 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 + + D + +M R I + + D+ V +L+SPLFNF E + Sbjct: 525 VMQEFAKADLPLFVTDAQNYFQTFELVMIMNYLRLIDNPQQDIPLVAVLRSPLFNFKEPE 584 Query: 453 IFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +I + + K ++ ++ + L A + I Sbjct: 585 LAQIRVKTRSGNFYNALTSFASVNSDLGQKCKNFLQQLESLRSFAATHRISELIWSIYER 644 Query: 511 KKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRA 564 + G + L+ E + L + IS +E+ Sbjct: 645 THLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFIERMRKNQKDLAQPLL 704 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 V++MT+H +KGLE PVVF++ G + + I D G+ I Sbjct: 705 SDKADKAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTI---SKDGLGLTIKEKD 761 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 + + + S ++ EE R+LYVG+TRA +LI+ + K+ + D Sbjct: 762 YRIDSLVKSLADVEKRQQMLEEEARILYVGLTRAQQKLILVASVSEMEAKQKKWESEIDQ 821 Query: 685 -----------------------VYDSFHNDERVKKIKLTNSINK----------DEWIA 711 + D+ ++ + L + Sbjct: 822 KTNILPLIRKINAQSPLDFLGPKLEQKHEFDQTIEDMTLALEEQDKIYYLKFAVQSDIEE 881 Query: 712 YEWSTHHPE----------------NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + + P +I K P+ ++ Sbjct: 882 KDEQKDDTQKLSTKMNDVVKTLYNFEYPFSDATKTTAYQSVSEIKKVFNDPMDTELENSR 941 Query: 756 ILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-N 812 +++ S + +T + G +H +LQ + + N Sbjct: 942 LISSSNRYLQPIDETPVFLEKQKFTGAEIGTAMHLVLQYYDYQGDKTKLNLDKEIEELVE 1001 Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINCPKK 860 +L + E S + Sbjct: 1002 LGKLNPLMVPHLSKEALNWFVMSEFAAEFWQKPEKLHRESQFSSLVNASELFNDFSDSAA 1061 Query: 861 DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYP 916 I++ G ID + + + +F+YKT E I + QL +YE+ L + Sbjct: 1062 KILVHGTIDGYFETDEGLILFDYKTDFVDKTHEEQAIDKIKQKYTGQLRLYEQALNEISE 1121 Query: 917 NKSL-VCLLIYVSEPKVFIIP 936 NK + LI + KV + Sbjct: 1122 NKKVIGKYLILLDARKVVPVD 1142 >gi|116490406|ref|YP_809950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni PSU-1] gi|122277405|sp|Q04GY7|ADDA_OENOB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116091131|gb|ABJ56285.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni PSU-1] Length = 1186 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 153/924 (16%), Positives = 306/924 (33%), Gaps = 116/924 (12%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + K++ D ++ + + + K + L K + K++ + Sbjct: 300 KPWIKEAKDSYRSIESDFLFLNESQWLDISEKSLGVVEELIRLTKVFRKKFALKKRELSL 359 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 LDF D +L+ +R +I + +L+DE QD + +Q ++ Sbjct: 360 LDFSDGEQFAYQILQN----QTVREEIQSLFDEVLVDEYQDINDLQENIL---------- 405 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 S+ F VGD KQSIY F A+P + ++ G +IEL ++RS Sbjct: 406 -TDVSNGSNFFMVGDLKQSIYGFRQADPVNFSNKYIQYKE-----GNGGELIELSENYRS 459 Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 ++ + VF + + D + +++ + + Sbjct: 460 QHNVADFTNAVFRKLMDRKLGGIDYRGDVELKAANRDYP----------KNLKNVADISI 509 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384 + +S IA I ++G I+ +GK R + +DI +L R Sbjct: 510 FDIDEESNEDEDFNSRQAQIEIIAAKIQALVGQSEIYDRQSGKMRPLVYRDITILERSHS 569 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + Y I + + +++ + I + D+ V +L+SP Sbjct: 570 ----WENDIQTIFKKYHIPINVAAG-NFLQEFEVSIVLSFLKIIDNPHQDIPLVAVLRSP 624 Query: 445 LFNFSEDDIFKICTQRHETETVYE----YIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 ++ E+ + +I T + + K + + IA Sbjct: 625 IYGLDENQLAEIRTADMKHDYFSALQAYAKTGQDLDLQKKMAAFLVQLENYREIAADNQI 684 Query: 501 HDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--Y 557 D I + G++ L + + N + L I +EQ Sbjct: 685 VDLIWQIYNDTNWPEYVAGMVGGSQRQANLHALYQYAQQLSDNHFVGLFSFIRYVEQLMD 744 Query: 558 PPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + V +MT+H AKGLE P+VFL++ Q+ + M + Sbjct: 745 SVEDFAQAPVDMGQEAVSVMTIHAAKGLEFPIVFLLNLDKQIDNRDSNGAMVVDFDNGIG 804 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-- 673 Q K + + +K+ E RLLYV +TRA +L + S ++ Sbjct: 805 IDFVHPTSQVKIPTIQKIAVAEKIKEKNWAEEMRLLYVALTRAEQRLYLVGSSKRMSDLI 864 Query: 674 -----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE-------- 708 + +++ + S N +K K+ + +K + Sbjct: 865 HNWGTPVSIGKKVIAFQDRMRAKSYQSWIGMSLANSGYIKLDKVEGNYSKKDLTFKIESY 924 Query: 709 --WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + + E+EET L +KI P K + N S + Sbjct: 925 NAQTIPKIVENKAKIKQNEQEETGIDLARSKKILD-YNYPYKIESELAAYHNVSELKRVF 983 Query: 767 KTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIFTLPEHKR 801 + L+ + + ++G H +L+ I + Sbjct: 984 EDPDSLLMPEMNSDRQPQITELPEPKFIGGNDQEQVSSTDKGTATHLILEKI-DWKKEID 1042 Query: 802 KNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCP 858 K+++ +N + K +++ L I + T S E + + I Sbjct: 1043 KDYLQQLIKEN--IPDQKTRQSIELDRIIWFANSEFGTEIKKSASTLKREQTFAMLIPAK 1100 Query: 859 K--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 + +++ G ID IS I +F+YKT + + + QL++Y Sbjct: 1101 QIYQQVETSDPVLVHGIIDGYFISDGLITLFDYKTDRFGKDYVSKLKERYSGQLNLYAAA 1160 Query: 911 LKDSYPNKSL-VCLLIYVSEPKVF 933 L YPN + +++ + ++ Sbjct: 1161 LSSIYPNLKVERKVVVGLQGKRLI 1184 >gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM] gi|75357583|sp|Q5FJX0|ADDA_LACAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|58254767|gb|AAV43004.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM] Length = 1207 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 161/982 (16%), Positives = 303/982 (30%), Gaps = 129/982 (13%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 A + ++ L + + ++I + + ++ +++ + I Sbjct: 257 DKFIDAIKNDEDYDQQRNLLRLCKFEVKYRKSAKWDEDIQEFYAETQKLKSEAKSQIFDI 316 Query: 111 RDRFNTYKMFKSTL----------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 F + T A L + E K+ LD+ D+ +L Sbjct: 317 FTAFYATDEKEQTRIMQESQKIVSAISKAELALIDRFNELKRNENFLDYSDMEQLAYQIL 376 Query: 161 K-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 S R + ILIDE QD + +Q +I+ + ++ TLF V Sbjct: 377 SADTSNSQMAREFYQNKFKEILIDEYQDINALQERIIQQV---------KNTDKNTLFMV 427 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD KQSIY F AEP L++ I L +FRST + V+++F Sbjct: 428 GDVKQSIYGFRQAEPSLFLKKYHGFASEENKHE---KRILLSDNFRSTEPVTKTVNQLFK 484 Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 ++ D + + + +++ + + + + Sbjct: 485 SILSSDFGGIDYSKEGQLIFGAKYYPDALPKASEIIVHKKQKDIDNDNNGIDFSEV---- 540 Query: 340 SSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + I + + G+ R ++ DI +L R D Sbjct: 541 -------EMVLARIKQLKKEHFQVLDSTTGEVRALKYSDIAILTRSHGD----NLEIMQE 589 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I + D + +M + I + + D+ V +L+SPLFNFSE D+ KI Sbjct: 590 FAKRDIPLFITDAENYFQTFELTVIMNYLKIIDNPDQDIPLVTVLRSPLFNFSEKDLAKI 649 Query: 457 CTQRHETE--TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 + + + + ++ + + EL A + I Sbjct: 650 RINSKNSGFYSAVASYVGIGDELSDRCKNFLNKLDELRKFATTHRISELIWSIYAQTNLL 709 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSAN 568 + G + L+ E + L + I+ + Q Sbjct: 710 EIMTGLPNGEQRRINLEALYERASSYESAGFKGLYQFINFINRMRRSQKDLAQPLLSKEA 769 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N VR+MT+H +KGLE PVVF + Q I P GI + + Sbjct: 770 GNAVRLMTIHGSKGLEFPVVFYLGMQHQYQLRDLKGNYVINPDSL---GITLRQEHYRVD 826 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 + + + K+ EE R+LYV +TRA +LI+ ++K + D Sbjct: 827 SLVKAIGNVTKKRQLLEEEARVLYVALTRAKQKLILVGDIANLDKKVQDWSIELDQSGQL 886 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI------------------ 730 D+ L + + + + L++ +++ Sbjct: 887 SLADKLSVTNPLGFMGPALAFDKHIVINMNDISNALDQSQSVLYVEYKDSDNFEFKKDED 946 Query: 731 -------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 +L+ K + P K+ S I +E+ L ++ Sbjct: 947 KVVGDSKNNNYTMDKLISTTKKLYQFDYPFKDASETTAYQAVSEIKKAFNDPIETELENS 1006 Query: 778 Q-------------------------TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809 + G H +LQ E + I Sbjct: 1007 RLLSSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYTGDGSEKQLDYEIEELI 1066 Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857 + K +L + + + + EV S + Sbjct: 1067 KQ--KKLNPDIVPSLHKDQIQWFVHSSFAKSFWKNPENLQREVDFSSLISAKNLFKDFSD 1124 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKD 913 I++ G ID +S I +F+YKT H ++ I + QL +YE+ + + Sbjct: 1125 ANAKILVHGTIDGYFVSNDGIILFDYKTDHVNKSYLDKSINLIKEKYTGQLRLYEQAINE 1184 Query: 914 SYPNKSLVCLLIYVSEPKVFII 935 K + LI + +V + Sbjct: 1185 FGEEKVIGKYLILLDAKQVVEV 1206 >gi|307692433|ref|ZP_07634670.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ruminococcaceae bacterium D16] Length = 1206 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 152/1010 (15%), Positives = 331/1010 (32%), Gaps = 104/1010 (10%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 + + + + + ++ + ++ L+ AQ +A++ ++ + Sbjct: 218 EDAARQGREAEHRLERALSLCAQDELLQMNYAPSIQASLEAAQAFCEAAEGSHWDKTCAC 277 Query: 69 LSSFF------------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 L F L+ + +TQ++ K+ L ++ + F + Sbjct: 278 LPMPFPAVGRKRKRSEELSPLEESRAAALTQQVKNLRDTAKDLLARAAERFDGDSTQVLA 337 Query: 117 --YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-SAWIRYKI 173 + + + L Y+ K + VLDF DL LL D + Sbjct: 338 DLQEAAPAVRGLMDLVLRFQEAYQAEKARRGVLDFSDLEHFAVKLLVGPDGQPTALANMW 397 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 +++DE QDT+ +Q + +++ RTLF VGD KQSIY F A+ Sbjct: 398 GARFEEVMVDEYQDTNQVQNAIFTAISR----------GGRTLFEVGDVKQSIYRFRLAD 447 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P L + R + L +FRS A +L + +F + Q D T Sbjct: 448 PTIFLDKYRRFVPGDEAKEGEPRKRVLSRNFRSRAQVLEGCNDLFRNIMSTQLGELDYT- 506 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 V E S + + +E + AR +A I Sbjct: 507 ---------DDQALVPGAEFPESGDYALELNALDLSYLGDQEGEKEDKNRLEARFVARRI 557 Query: 354 SNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 ++ + G R ++ D+++L+R ++ R L + I Sbjct: 558 RALLEEPLMVKEGDGVRPLRPSDVMILLRSP--GVVLHHYIRALGEE-GIPWNAEGGEDF 614 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 + +++ + + + D+ + L+SP+F F D + ++ + Y + + Sbjct: 615 FATTEVNVALSILQIVDNPRQDVPLIAALRSPVFGFDADHLAQL--RAGTKGDFYSALTE 672 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDE 531 A G + Q ++ + EL A + I F G E + L Sbjct: 673 AAQNGDTASQDFLRELEELRFGAGDRTCRQLIWHIYEKTNILGLFGAMPGGEERQNNLLT 732 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTAKGLESPV 587 + E SL + + LE+ T + + V I+++H +KGLE PV Sbjct: 733 LYALAGQMEDGGCRSLFQFLLRLERLRDTGAKLTAAGGGGDGDGVSILSIHKSKGLEKPV 792 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V + ++ ++ + P L P + + + L++ E Sbjct: 793 VLVCGLSRRLNREDLMRPVLFHPVLGVGPKGLDRARMVEYPTLARRAVSRQLEREMMSEE 852 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNE------------------KKSNQRTWYDMVYDSF 689 RLLYV MTRA ++LI+ + ++ + +++ Sbjct: 853 MRLLYVAMTRAKEKLILTLALTEGAKALERLAEDAAAPVSPVALERQQSVGQWILLHALT 912 Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE---------TIKQLMDEQKIP 740 + + + + + +WS E LE + ++ ++ Sbjct: 913 RPEGEILRTLVGGGTECTATLGPKWSIRWIEGQGLEEARGRTGRFVPVSREEDGEDLTAA 972 Query: 741 KKLFSPIKNDINEPYILNPSTI---------------------DTKGKTNLESLLSDNQT 779 P + P L + + + + + + Sbjct: 973 LTWTYPFAAAVQAPSKLTATQLKGRVLDQEAAQEAQGAPQTAPEPIRRPDFIARRQGLTA 1032 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LWPAKEYKNLLLSIT-RLLENPMM 837 +G +H +Q + +H + + + + + + + +P+ Sbjct: 1033 AQKGTALHLAMQYLPLEGDHSPEAIAEAVAGMVRDSFLTSLQGEAVKPEVLSAFFTSPLG 1092 Query: 838 TTAMSCD-SYSEVSVSGKINC-------PKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 + E S +++++ G +D + ++ I + ++K+ + Sbjct: 1093 RELAQAQEVHREFKFSLLTPAGDYLPGLEGEEVLLQGVVDCWFVDERGITVLDFKSDRIL 1152 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 P + E ++ QLS Y + L+ +L + + +P+ + Sbjct: 1153 PGQEEKRAQSYAPQLSAYSRALERITGRSVCRKMLWFFATSTPVELPKTE 1202 >gi|255003370|ref|ZP_05278334.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Puerto Rico] Length = 867 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 182/641 (28%), Positives = 314/641 (48%), Gaps = 34/641 (5%) Query: 38 SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNII---TQEINKKS 93 +++ G+ K + L + + E + S F+ + +K+I T+ I ++ Sbjct: 217 ALKCGSTRDQKIGKRLSTWNTSARRSPEEVAEYLSIFINLQSLAKKSISSIVTKGILEQF 276 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 PD+ ++ Q+ ++ ++F T ++ K T + +A+ A YE+ KK + LD+ D+I Sbjct: 277 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 336 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T DL+ D W+ +++D EI+HIL+DE QD SL QW ++ +L +FF G ++++ Sbjct: 337 GLTLDLMLHPDYKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSNNNK 396 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIY F A P R + I+L SFRS IL + Sbjct: 397 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 452 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VD+VF+ + + I+H + R G V++W + ++ + E Sbjct: 453 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRRKLYAWDELEVETG 509 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + +LA+ +A +I I + I K R ++A DIL+LVR+R ++ Sbjct: 510 TPHATDH--LLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVDYI 563 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 + V G DRF + D++AI+DL+ LG F+L E+D++ +LKSP+F ++ D+ Sbjct: 564 IAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDCDL 623 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + R + +++ +Q FA F + Y+ LI+ ++ +P D + LIL Sbjct: 624 LNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLVSLINASKTRTPLDLYCLILSEH-- 676 Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 R++ + G +++DEF+N + N+ ++L+ I ++ P +K + + + R Sbjct: 677 REKLLQHPGQASAEIVDEFMNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINTSEDVAR 736 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MTVH AKG++SP+VFL DT + + + D PIW N Sbjct: 737 VMTVHNAKGMQSPIVFLPDTTNVPR--------CELQLIFDAENTPIWCAG--DTNARCR 786 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 DL ++ EY RLLYV MTRA D+L + + Sbjct: 787 DLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 827 >gi|269958568|ref|YP_003328355.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel] gi|269848397|gb|ACZ49041.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel] Length = 867 Score = 351 bits (900), Expect = 4e-94, Method: Composition-based stats. Identities = 183/643 (28%), Positives = 314/643 (48%), Gaps = 38/643 (5%) Query: 38 SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNI---ITQEINKKS 93 +++ G+ K + L + T+ E + S F+ + +K+I T+ I ++ Sbjct: 217 ALKCGSTRDQKIGKRLSTWNTSTRRSPEEVAEYLSIFINLQSLAKKSISSIATKGILEQF 276 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 PD+ ++ Q+ ++ ++F T ++ K T + +A+ A YE+ KK + LD+ D+I Sbjct: 277 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 336 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T DL+ D W+ +++D EI+HIL+DE QD SL QW ++ +L +FF G + ++ Sbjct: 337 GLTLDLMLHPDYKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSSNNK 396 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIY F A P R + I+L SFRS IL + Sbjct: 397 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 452 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VD+VF+ + + I+H + R G V++W + ++ + +W Sbjct: 453 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRR----KLYAWDEPE 505 Query: 334 DSLPQESSASI--LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391 + LA+ +A +I I + I K R ++A DIL+LVR+R ++ Sbjct: 506 METGTPHATDHLLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVD 561 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + V G DRF + D++AI+DL+ LG F+L E+D++ +LKSP+F ++ Sbjct: 562 YIIAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDC 621 Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 D+ + R + +++ +Q FA F + Y+ LI+ ++ +P D + L+L Sbjct: 622 DLLNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLVSLINASKTRTPLDLYCLVLSEH 676 Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 R++ + G +++DEF+N + N+ ++L+ I ++ P +K + + + Sbjct: 677 --REKLLQHPGQASAEIVDEFMNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINTSEDV 734 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 R+MTVH AKG++SP+VFL DT S + + D PIW N Sbjct: 735 ARVMTVHNAKGMQSPIVFLPDTTSVPR--------CELQLIFDAENTPIWCAG--DTNAR 784 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 DL ++ EY RLLYV MTRA D+L + + Sbjct: 785 CRDLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 827 >gi|290889814|ref|ZP_06552901.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429] gi|290480424|gb|EFD89061.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429] Length = 1186 Score = 351 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 154/924 (16%), Positives = 309/924 (33%), Gaps = 116/924 (12%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + K++ D ++ + + + K + L K + K++ + Sbjct: 300 KPWIKEAKDSYRSIESDFLFLNESQWLDISEKSLGVVEELIRLTKVFRKKFALKKRELSL 359 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 LDF D +L+ +R +I + +L+DE QD + +Q ++ Sbjct: 360 LDFSDGEQFAYQILQN----QTVREEIQSLFDEVLVDEYQDINDLQENIL---------- 405 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 S+ F VGD KQSIY F A+P + ++ G +IEL ++RS Sbjct: 406 -TDVSNGSNFFMVGDLKQSIYGFRQADPVNFSNKYIQYKE-----GNGGELIELSENYRS 459 Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 ++ + VF + + D + +++ + + Sbjct: 460 QHNVADFTNAVFRKLMDRKLGGIDYRGDVELKAANRDYP----------KNLKNVADISI 509 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384 + +S IA I ++G I+ +GK R + +DI +L R Sbjct: 510 FDIDEESNEDEDFNSRQAQIEIIAAKIQALVGQSEIYDRQSGKMRPLVYRDITILERSHS 569 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + Y I + + +++ + I + D+ V +L+SP Sbjct: 570 ----WENDIQTIFKKYHIPINVAAG-NFLQEFEVSIVLSFLKIIDNPHQDIPLVAVLRSP 624 Query: 445 LFNFSEDDIFKICTQRHETETVYE----YIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 ++ E+ + +I T + + K + + IA Sbjct: 625 IYGLDENQLAEIRTADMKHDYFSALQAYAKTGQDLDLQKKMAAFLVQLENYREIAADNQI 684 Query: 501 HDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 D I + G++ L + + N + L I +EQ Sbjct: 685 VDLIWQIYNDTNWPEYVAGMVGGSQRQANLHALYQYAQQLSDNHFVGLFSFIRYVEQLMD 744 Query: 560 TIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 +++ A V +MT+H AKGLE P+VFL++ Q+ + M + Sbjct: 745 SVEDFAQAPVNMGQEAVSVMTIHAAKGLEFPIVFLLNLDKQIDNRDSNGAMVVDFDNGIG 804 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-- 673 Q K + + +K+ E RLLYV +TRA +L + S ++ Sbjct: 805 IDFVHPTSQVKIPTIQKIAVAEKIKEKNWAEEMRLLYVALTRAEQRLYLVGSSKRMSDLI 864 Query: 674 -----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE-------- 708 + +++ + S N +K K+ + +K + Sbjct: 865 HNWGTPVSIGKKVIAFQDRMRAKSYQSWIGMSLANSGYIKLDKVEGNYSKKDLTFKIESY 924 Query: 709 --WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + + E+EET L +KI P K + N S + Sbjct: 925 NAQTIPKIVENKAKIKQNEQEETGIDLARSKKILD-YNYPYKIESELAAYHNVSELKRVF 983 Query: 767 KTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIFTLPEHKR 801 + L+ + + ++G H +L+ I + Sbjct: 984 EDPDSLLMPEMNSDRQPQITELPEPKFIGGNDQEQVSSTDKGTATHLILEKI-DWKKEID 1042 Query: 802 KNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCP 858 K+++ +N + K +++ L I + T S E + + I Sbjct: 1043 KDYLQQLIKEN--IPDQKTRQSIELDRIIWFANSKFGTEIKKSASTLKREQTFAMLIPAK 1100 Query: 859 K--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 + +++ G ID IS I +F+YKT + + + QL++Y Sbjct: 1101 QIYQQVETSDPVLVHGIIDGYFISDGLITLFDYKTDRFGKDYVSKLKERYSGQLNLYAAA 1160 Query: 911 LKDSYPNKSL-VCLLIYVSEPKVF 933 L YPN + +++ + ++ Sbjct: 1161 LSSIYPNLKVERKVVVGLQGKRLI 1184 >gi|222475386|ref|YP_002563803.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Florida] gi|255004493|ref|ZP_05279294.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Virginia] gi|222419524|gb|ACM49547.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Florida] Length = 867 Score = 351 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 183/641 (28%), Positives = 314/641 (48%), Gaps = 34/641 (5%) Query: 38 SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNII---TQEINKKS 93 +++ G+ K + L + T+ E + S F+ + +K+I T+ I ++ Sbjct: 217 ALKCGSTRDQKIGKRLSTWNTSTRRSPEEVAEYLSIFINLQSLAKKSISSIVTKGILEQF 276 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 PD+ ++ Q+ ++ ++F T ++ K T + +A+ A YE+ KK + LD+ D+I Sbjct: 277 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 336 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T DL+ D W+ +++D EI+HIL+DE QD SL QW ++ +L +FF G + ++ Sbjct: 337 GLTLDLMLHPDCKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSSNNK 396 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIY F A P R + I+L SFRS IL + Sbjct: 397 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 452 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VD+VF+ + + I+H + R G V++W + ++ + E Sbjct: 453 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRRKLYAWDELEVETG 509 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + +LA+ +A +I I + I K R ++A DIL+LVR+R ++ Sbjct: 510 TPHATDH--LLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVDYI 563 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 + V G DRF + D++AI+DL+ LG F+L E+D++ +LKSP+F ++ D+ Sbjct: 564 IAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDCDL 623 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + R + +++ +Q FA F + Y+ LI+ ++ +P D + LIL Sbjct: 624 LNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLVSLINASKTRTPLDLYCLILSEH-- 676 Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 R++ + G +++DEF+N + N+ ++L+ I ++ P +K + + + R Sbjct: 677 REKLLQHPGQASAEIVDEFMNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINTSEDVAR 736 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MTVH AKG++SP+VFL DT + + + D PIW N Sbjct: 737 VMTVHNAKGMQSPIVFLPDTTNVPR--------CELQLIFDAENTPIWCAG--DTNARCR 786 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 DL ++ EY RLLYV MTRA D+L + + Sbjct: 787 DLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 827 >gi|306831079|ref|ZP_07464240.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426645|gb|EFM29756.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1210 Score = 351 bits (899), Expect = 5e-94, Method: Composition-based stats. Identities = 152/1001 (15%), Positives = 327/1001 (32%), Gaps = 138/1001 (13%) Query: 26 FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85 V+D+ Y + G PT + L Q + + F L + + Sbjct: 255 QDVTDLEDYKQKT-AKGTPTA-NYKKHLNIIEQLREWAQHFETLYG----RDGLGRLATD 308 Query: 86 TQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNA 135 ++ P + K Q ++ +K +L L + + Sbjct: 309 VAKLLPAGPAVTVAGTKYPVFKPLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSE 368 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y +AK + +F D+ +L++ A IR + + +++DE QD + Q + Sbjct: 369 QYLQAKIQENAFEFSDIAHFAIQILEEN---ADIRELYQNKYHEVMVDEYQDNNHTQERM 425 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 + L S+ F VGD KQSIY F A+P+ ++ + Q+ + Sbjct: 426 LELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE----HPDRG 470 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 +I L +FRS +++L + +F+ + T + + Q E Sbjct: 471 KLILLKENFRSQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVAGSPAQK------ESHP 524 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 ++ + + + +A I + + + +D Sbjct: 525 ENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVAKEIIRLHNEEH---------VAFED 575 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDD 434 I +LV R Y I V + + ++ R + + +D Sbjct: 576 ITLLVSSRTR----NDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLND 631 Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--------------ISK 480 + V +++SP+F+F+ED++ ++ Q E + QK + K Sbjct: 632 YALVALMRSPMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELMTITLHDK 691 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539 + A++ + +D I + + + L Sbjct: 692 LADFMACFAAWREFAKWHALYDLIWKIYNDRFYYDYVGNLPRAEQRQANLYALALRANNF 751 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGS 595 E+ + L I +++ + N V +MT+H +KGLE VF+++ Sbjct: 752 ERTGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLEFKYVFILNIDK 811 Query: 596 QVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 + + + + + + L+ +T Sbjct: 812 KFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVSMDTLPYQLNKRELRLATL 871 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDS 688 E RL YV MTRA +L + +++ ++ N T+ D V Sbjct: 872 SEQMRLFYVAMTRAEKKLYLVGKASSEKLVDKYSGKSENNHLPVAERENFMTFQDWVLAI 931 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWS-------THHPENTPLEREETIKQLMDEQKIPK 741 + + + + ++ + + T + E I + +D + + Sbjct: 932 YEAYSKENLPFAVDFVTDEDLTDDKIGKIEATSVITPDDLTDNRQSENITEALDRLEAVE 991 Query: 742 KLFSPIKNDINEPYILNPSTI----------------------DTKGKTNLESLLSDNQT 779 KL + IN P + PS + + S + + Sbjct: 992 KLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFELPDFSKKAKIEA 1051 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839 G +H+L+Q I + + + +A+ + + L ++ EN + Sbjct: 1052 TAIGSAMHELMQRIPLSKQVTIADITAALAQVSAE--DEVKARIRLENVLAFFENSELGQ 1109 Query: 840 AMSCD---SYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + Y E + + K+ ++ G +D + I +F+YKT + + Sbjct: 1110 LIQQHTDKVYREAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKY--KNSV 1167 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I + Q+++Y + L SY K++ L+ + ++ ++ Sbjct: 1168 EIKERYQGQMALYAEALSKSYDRKNVDKYLVLLGGEQLEVV 1208 >gi|295095005|emb|CBK84096.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Coprococcus sp. ART55/1] Length = 1280 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 152/1013 (15%), Positives = 325/1013 (32%), Gaps = 110/1013 (10%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 +GL +++ ELI L D++ + + ++ + +++ +Q + I Sbjct: 278 AYGLRVDKDVELITHMLRSCGGED--DLHVDLFELRDIYRSSLRPEGLKMEKDAQGRSIC 335 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F + P+K + + + + + I Sbjct: 336 YAFDRFVN--PGGGADPEKKEFVKSRRDVYKSIIDDIVSVVLDVDDIL--RQAAMTEPVI 391 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEIN 178 + L L + + K + +F D+ +L R V + I ++ + Sbjct: 392 SSLLKLTELYMDELMKVKMDKNMFEFHDIEEFAFRILCDGIEDDRAVPSEIGKEVSRRYR 451 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 ILIDE QD++ +Q ++ F VGD KQSIY F A P + Sbjct: 452 EILIDEYQDSNFLQEYIL-------ASVSGHGEDIHNTFMVGDVKQSIYRFRMARPDLFI 504 Query: 239 REKRINQK----RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + ++ + + I L +FRS ++L V+ +F+ + + Sbjct: 505 EKYDSYRRLGDADIADPDIDGNSILLTRNFRSEINVLKTVNSIFAQLMRREIGDIEYDEG 564 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 + S G V ++ D + + + A IA I Sbjct: 565 AKLNSRFAISDGEGMAEPDDVDHGPVSEFILIDNNMREADVSEEYGNPEVEANYIAGKIR 624 Query: 355 NMIGTDTIFSNG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 +++ G +R ++ KDI++L+R I + + I + Sbjct: 625 DIVDGSEPLYVGSGADRRPVRYKDIVILLRSVSTASTI---FDRVFQEKGIPLYIESESG 681 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--------------C 457 D I+ L+++ + + D +L+SPL E+++ I Sbjct: 682 YFDAAEIRTLVSMLSIVDNSYVDYDLAAVLRSPLVGLDEEELAVIVGEYRSRYEKNGTDW 741 Query: 458 TQR--HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 R + + + + ++ + L + S D +L Sbjct: 742 NARLYDKVIDYMDTHVGEKKHAVDRLWEFLRMLDYLKKNKNYMSISDIIRYVLDTTGFYW 801 Query: 516 QFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANH 569 +R G +D + E+NS + I +++ N Sbjct: 802 FVGARPMGRRRQANIDMLIKKADDFEENS-KGVFNFIRYVDELKTNDLDFAEADVVSENE 860 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629 + VR+MT+H +KGLE PVVF+ G + + + +++ Sbjct: 861 DVVRVMTMHKSKGLEFPVVFVSGLGKEFNLMDTRSNVLVHQDHYLACDQVDLRTRARRMT 920 Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689 + K++ T E R+LYV +TRA ++L + +++ K+ + ++ Sbjct: 921 FFKRIMSKNIVAETYAEEMRVLYVALTRAKEKLYMTGCVKDADKFKAACDMYIIGDRMNY 980 Query: 690 H--------NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 ++ + + I E + T + E + E K+ K Sbjct: 981 ASIMKANGYAAWIYTALRYVGECDHVKSIEVEADSFMSPETDQDEAENMTVEASEAKLDK 1040 Query: 742 KLFSPIKNDINEPYILNPSTI------------------------------DTKGKTNLE 771 +L+ +KN + Y S + + + + Sbjct: 1041 ELYDHVKNGLEFRYGYRHSGLKSKMSITEIKRLQAHGEDAITPDILTSREYSARSEVPIP 1100 Query: 772 SLLSDNQ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL-LS 827 + +S+ + G I HK++++ + L+ + + Sbjct: 1101 AFMSEERIVHGNEIGNIYHKIMELADFSGKTVADAEKDVDRVFELGLFDELYRERIRPKK 1160 Query: 828 ITRLLENPMMTTAMSCD----SYSEVSVSGKINC----------PKKDIIISGRIDQISI 873 I +++ + + + Y E + + I++ G ID Sbjct: 1161 IYKMIHSEIGQRMAAAGKSDRLYRERQFYMMMEPGEIMSSLKDCGDETIVVQGIIDAYFE 1220 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 I + +YKT ++ + + QL Y +L+ K + +IY Sbjct: 1221 EDGGIVLLDYKTDSV--KDASELVKRYHVQLDKYADVLEQLTGMK-VKEKVIY 1270 >gi|254995195|ref|ZP_05277385.1| hypothetical protein AmarM_04376 [Anaplasma marginale str. Mississippi] Length = 866 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 184/641 (28%), Positives = 315/641 (49%), Gaps = 34/641 (5%) Query: 38 SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNII---TQEINKKS 93 +++ G+ K + L + T+ E + S F+ + +K+I T+ I ++ Sbjct: 216 ALKCGSTRDQKIGKRLSTWNTSTRRSPEEVAEYLSIFINLQSLAKKSISSIVTKGILEQF 275 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 PD+ ++ Q+ ++ ++F T ++ K T + +A+ A YE+ KK + LD+ D+I Sbjct: 276 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 335 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T DL+ D W+ +++D EI+HIL+DE QD SL QW ++ +L +FF G + ++ Sbjct: 336 GLTLDLMLHPDCKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSSNNK 395 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIY F A P R + I+L SFRS IL + Sbjct: 396 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 451 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VD+VF+ + + I+H + R G V++W + ++ + E Sbjct: 452 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRRKLYAWDELEVETG 508 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + +LA+ +A +I I + I K R ++A DIL+LVR+R ++ Sbjct: 509 TPHATDH--LLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVDYI 562 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 + V G DRF + D++AI+DL+ LG F+L E+D++ +LKSP+F ++ D+ Sbjct: 563 IAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDHDL 622 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + R + +++ +Q FA F + Y+ LI+ ++ +P D + L+L Sbjct: 623 LNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLASLINASKTRTPLDLYCLVLSEH-- 675 Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 R++ + G +++DEFLN + N+ ++L+ I ++ P +K +A+ + R Sbjct: 676 REKLLQHPGQASAEIVDEFLNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINASEDVAR 735 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MTVH AKG++SP+VFL DT + + + D PIW N Sbjct: 736 VMTVHNAKGMQSPIVFLPDTTNVPR--------CELQLIFDAENTPIWCAG--DTNARCR 785 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 DL ++ EY RLLYV MTRA D+L + + Sbjct: 786 DLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 826 >gi|25010945|ref|NP_735340.1| exonuclease RexA [Streptococcus agalactiae NEM316] gi|77413173|ref|ZP_00789372.1| reticulocyte binding protein [Streptococcus agalactiae 515] gi|81588835|sp|Q8E5T9|ADDA_STRA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|23095324|emb|CAD46535.1| unknown [Streptococcus agalactiae NEM316] gi|77160791|gb|EAO71903.1| reticulocyte binding protein [Streptococcus agalactiae 515] Length = 1207 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 153/917 (16%), Positives = 312/917 (34%), Gaps = 122/917 (13%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155 K+ + + ++ +K +L L L + + Y + K + +F D+ Sbjct: 329 FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 +L++ IR + + +++DE QD + Q ++ L S+ Sbjct: 389 AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 434 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ + + Q + + +I L +FRS +++L + Sbjct: 435 RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 VF+ + + + + ++ Q + V D+ + +S + +D Sbjct: 491 SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDINDSDSQQYDI 550 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 P E A+ +A I + + + +DI +LV R Sbjct: 551 SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRTR----NDGILQ 591 Query: 396 LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + Y I V + + ++ R I + +D + V +L+SP+F F+EDD+ Sbjct: 592 TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651 Query: 455 KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 +I Q + + + SK H +K A++ S +D Sbjct: 652 RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLI 711 Query: 505 TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 I + + + L + E+ + L I +++ Sbjct: 712 WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 771 Query: 564 AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615 N V +MT+H +KGLE VF+++ + + + + Sbjct: 772 LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 831 Query: 616 -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + + + L+ +T E RLLYV MTRA +L + + Sbjct: 832 ADMRHELEEELLPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 891 Query: 669 NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 + S E + W V++++ E I + + Sbjct: 892 SQTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 951 Query: 710 IAYEWSTHHPENTPLERE----ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762 + P N + E E I + + + +++ K I P + PS + Sbjct: 952 HIGMVNPSLPFNPDNKAENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKF 1011 Query: 763 -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 K S G +H+L+Q I K ++ Sbjct: 1012 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMED 1071 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858 + NA+ + + + I + + + + E + + Sbjct: 1072 IQKALTEVNAE--TSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPES 1129 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 + ++ G ID + + I +F+YKT V + + Q+++Y + LK SY + Sbjct: 1130 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1187 Query: 919 SLVCLLIYVSEPKVFII 935 + LI + ++ ++ Sbjct: 1188 KIDKYLILLGGKQLEVV 1204 >gi|257869454|ref|ZP_05649107.1| UvrD/REP helicase [Enterococcus gallinarum EG2] gi|257803618|gb|EEV32440.1| UvrD/REP helicase [Enterococcus gallinarum EG2] Length = 1226 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 158/1031 (15%), Positives = 319/1031 (30%), Gaps = 137/1031 (13%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + + + E + Q + K +L + + Q +Q+ T + + Sbjct: 229 VEIAATAEHLLAAAKQFA-DQSPLMEKAAALVQA-----EISQVQEIQRVLATDDLSVLY 282 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMF 120 L+ + + +K +E++++ L++ KK ++ Sbjct: 283 DRLTHLTFDRYPSYRKEEQ-KELSQEIKPLRDDAKKLLEQLKGYFPYPPADMLQMLQLSE 341 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + K ++ K +LDF DL T +L + + + Sbjct: 342 PIVATMAEMTKEFLTAFQARKLAKGLLDFNDLEHFTLKILLGDGTGSDASVYYRDKFEEV 401 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QD + +Q ++ + + +F VGD KQSIYSF A+P + + Sbjct: 402 LVDEYQDINRLQEAILYWVRQ-------VSGDHGNMFMVGDVKQSIYSFRLADPTLFIEK 454 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + I L +FRS ++L + VF L ++ I + + Sbjct: 455 YLAFE-----HQNGGRRIVLAENFRSRREVLDFTNLVFQQ------LMDEQVGQIPYDDA 503 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 G E + ++ T+ E + A I +I + Sbjct: 504 AALVPGFPSFHESDAFIPELLIYEKEAESTTNLIEDKTEGELHVTA----IKIQELIQSQ 559 Query: 361 TIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + + K+ R + +DI++L RK+ +I + + + I + ND Sbjct: 560 FMIYDKKRREERPVTYQDIVLLTPTRKNNLVILDVFK----KFGIPLEVNDAQNYFQATE 615 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 I+ ++AL + I + D+ V +L+SP+ +ED++ +I +E + N Sbjct: 616 IQTMIALLQIIDNPYQDIPLVAVLRSPMVGLTEDELAEIRLADRTSEFYKAVLTYQDNQK 675 Query: 478 ------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 + + ++ A+ + I + G + L Sbjct: 676 GTVSALSKRVDDFLSELNRWREAARRLPIPNLLWDIYDTTAYLDYVVGLPAGQQRYANLI 735 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESP 586 ++ + E++S+ L + I +E+ K N VR+MTVH +KGLE P Sbjct: 736 ALIHRAEKYEKSSFRGLYQFIRFIEKMQEKDKDLAEPLATPAENAVRVMTVHASKGLEFP 795 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VVFL+DT K+ L K + + K E Sbjct: 796 VVFLLDTTKFFNYQDFQKRYIFEEQLGAGIQYIDASENIKYETIPFQAIKQVRLKKALSE 855 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVY 686 R LYV +TRA +L + + + + D V Sbjct: 856 EMRKLYVALTRAEQKLYLVGSYKDRQAAFKAWQAGLTQSQTVLDPALRLVARGSLMDWVG 915 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--------------PENTPLEREETIKQ 732 + ++++ S K H P + Sbjct: 916 LTLIRHPEMEQVFTDASERKMTIHHPARFQIHWWNQDQIDQQLQVQPPTEAVVAPTPSTT 975 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------------ 762 + P + S + Sbjct: 976 APERLLNRLDYQYPYSKATQTTSYQSVSELKRLYNDPDDQDITLLEWHSADQKLAPQRFR 1035 Query: 763 --DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 +T+ Q + G H ++Q++ + + K+ Sbjct: 1036 YVETELAKPRFLQEQKPQASSIGSATHLVMQMLPLTEVPTEASLAAFIDELVERQLFTKD 1095 Query: 821 YKNLLLS--ITRLLENPMMTTA--MSCDSYSEVSVSG---------KINCPKKDIIISGR 867 + + I + + T + E S + P +++I G Sbjct: 1096 VADKIDQASIVWFYQTAVGQTLIKYATQVKREQPFSMLKEAATIFEGFDEPDAELLIHGI 1155 Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIE---HIPYTHIAQLSIYEKILKDSYPNKSL-VCL 923 ID I ++++KT E + + + QL +Y + L+ + K + Sbjct: 1156 IDGYVELPDRIILYDFKTDAVFGSEAQIEKRMRDRYYGQLKLYCQALEQAL-QKPVTETY 1214 Query: 924 LIYVSEPKVFI 934 L+ ++ K+ Sbjct: 1215 LVLLAAKKIIE 1225 >gi|310826445|ref|YP_003958802.1| recombination helicase AddA [Eubacterium limosum KIST612] gi|308738179|gb|ADO35839.1| recombination helicase AddA [Eubacterium limosum KIST612] Length = 1190 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 154/976 (15%), Positives = 319/976 (32%), Gaps = 118/976 (12%) Query: 36 SLSMETGNPTILKKAQTLQQ-ASQTQCIEERFSLLSSFF---LTQKFTPQKNIITQEINK 91 + ++ K A LQ+ + F L+ + + + + Sbjct: 234 AYALCRDTEGFEKTAAQLQEDFFAVGLAMDALEEGYDDFRNALSGIRFARYSGNKKADAE 293 Query: 92 KSPDLKEKLKKSQDEFIKIRDRF---------NTYKMFKSTLASLTLAKYLNAHYEEAKK 142 S +K+ +++ ++ R +M + + L + Y+ K Sbjct: 294 TSDHIKDLRNEAKGIVQGLQKRLNLDLTEALAQLAEMKRPMEDLVGLTRDFQKKYQLKKA 353 Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 + +LDF DL +T +L+ ++A +R ++ ++ +DE QDT+ +Q +I+ + D Sbjct: 354 EKNLLDFNDLEQSTLRILENPAIAAEVR----EQYAYVFLDEYQDTNDMQEAIIKRIVRD 409 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 F VGD KQSIY F A+P + + R + +I L Sbjct: 410 D-----------NYFMVGDVKQSIYRFRLADPTIFIGKYRAFSQETDALND---LITLSQ 455 Query: 263 SFRSTADILTVVDKVFSIPEN-AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 +FRS ++ V+ VF + A G ++ + ++ D Sbjct: 456 NFRSCQGVVDGVNTVFEAIMSPALGEIAYDERARLYKGLDSEGPYVKTQVHVIENKTDED 515 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLV 380 +P + + + + AR IA I + +G G++R++Q +DI VL+ Sbjct: 516 TDPI----------VGEMPAVEMEARFIAREIQSRVGKPFYDTKTGEERLLQYRDIGVLM 565 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + ++ I + + + I +M L I + DL + + Sbjct: 566 RSVAGRGDVYAKI---FSELGIPAYFDGGEQYYESMEIGVIMNLLDLIDNHHQDLPLLSV 622 Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQ---KFANCGISKFQHVIKYIHELIHIAQF 497 + SP+ +F ++ +I + E + + + +K + + + ++ Sbjct: 623 MTSPIGDFDTEECTEIRLFQKEGSYYAAAEKYKDEREDALAAKLKAFYQRLDAWQWDSRV 682 Query: 498 CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556 DF + + G + + L L ++++ L I +E+ Sbjct: 683 MDIEDFLWKLYLDTGYYHFVGALPGGEQRQNNLRVLLKRAGDYKRSTLRGLFYFIRFIER 742 Query: 557 Y-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 + S + N VRIMT+H +KGLE PVVFL TG + + Sbjct: 743 MKKHKYDLSPPGVLSESENVVRIMTIHKSKGLEFPVVFLSGTGKLFNKRTRNRDILFHKD 802 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L P ++K + ++ + T E RLLYV MTRA + L++ Sbjct: 803 LGICPDYINLELRAKMPTLAKNICLEKNEMETLSEEMRLLYVAMTRARESLVVVGMVKNL 862 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-------------- 717 + + D+ + ++ + E E H Sbjct: 863 ESRLTAWSGPGDLYHLKKAGGLLDWIMQALLRNSAPEIAGEEKRRHLSLPSYDVYFYTAE 922 Query: 718 --------HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP------------YIL 757 L E Q++ ++L + + + Sbjct: 923 QSLKHHVSEDTVEELMEEAQAPSEAMWQEVCRRLSYRYPFEGQQELPGKMTVTEVKRLRI 982 Query: 758 NPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIF----------TLPEHK 800 + +L S + +G +H ++Q + T Sbjct: 983 QAEALGVPEIPERVALPSFMVADAREITGAEKGTALHFMMQSLPLDKLRAVAADTGALDG 1042 Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCP- 858 L P L I R ++ + ++ EV + + + Sbjct: 1043 LLTEERQRLVTEELLLPELAETIDLEVIRRFFQSELGRRMLAAERVRREVPFNYQYDPRK 1102 Query: 859 --------KKDIIISGRIDQISISQQNIFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEK 909 +++ G ID + +YKT + + + + Q++ Y + Sbjct: 1103 VLPDWQHADTPLVVQGMIDCCFEENGKWILLDYKTDRYFGEASRKQLIDQYRLQINFYAE 1162 Query: 910 ILKDSYPNKSLVCLLI 925 L + + ++ Sbjct: 1163 ALANL-TGMPVAERIL 1177 >gi|227904086|ref|ZP_04021891.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC 4796] gi|227868105|gb|EEJ75526.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC 4796] Length = 1207 Score = 349 bits (896), Expect = 8e-94, Method: Composition-based stats. Identities = 161/982 (16%), Positives = 306/982 (31%), Gaps = 129/982 (13%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 A + ++ L + + ++I + + ++ +++ + I Sbjct: 257 DKFIDAIKNDEDYDQQRNLLRLCKFEVKYRKSAKWDEDIQEFYAETQKLKSEAKSQIFDI 316 Query: 111 RDRFNTYKMFKSTL----------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 F + T A L + E K+ LD+ D+ +L Sbjct: 317 FTAFYATDEKEQTRIMQESQKIVSAISKAELALIDRFNELKRNENFLDYSDMEQLAYQIL 376 Query: 161 K-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 S R + ILIDE QD + +Q +I+ + ++ TLF V Sbjct: 377 SADTSNSQMAREFYQNKFKEILIDEYQDINALQERIIQQV---------KNTDKNTLFMV 427 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD QSIY F AEP L++ A+ ++ I L +FRST + V+++F Sbjct: 428 GDVNQSIYGFRQAEPSLFLKKYHGF---ASEENKREKRILLSDNFRSTEPVTKTVNQLFK 484 Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 ++ D + + + +++ + + + + Sbjct: 485 SILSSDFGGIDYSKEGQLIFGAKYYPDALPKASEIIVHKKQKDIDNDNNGIDFSEV---- 540 Query: 340 SSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + I + + G+ R ++ DI +L R D Sbjct: 541 -------EMVLARIKQLKKEHFQVLDSTTGEVRALKYSDIAILTRSHGD----NLEIMQE 589 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I + D + +M + I + + D+ V +L+SPLFNFSE D+ KI Sbjct: 590 FAKRDIPLFITDAENYFQTFELTVIMNYLKIIDNPDQDIPLVTVLRSPLFNFSEKDLAKI 649 Query: 457 CTQRHETE--TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 + + + + ++ + + EL A + I Sbjct: 650 RINSKNSGFYSAVASYVGIGDELSDRCKNFLNKLDELRKFATTHRISELIWSIYAQTNLL 709 Query: 515 QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSAN 568 + G + L+ E + L + I+ + Q Sbjct: 710 EIMTGLPNGEQRRINLEALYERASSYESAGFKGLYQFINFINRMRRSQKDLAQPLLSKEA 769 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N VR+MT+H +KGLE PVVF + Q I P GI + + Sbjct: 770 GNAVRLMTIHGSKGLEFPVVFYLGMQHQYQLRDLKGNYVINPDSL---GITLRQEHYRVD 826 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 + + + K+ EE R+LYV +TRA +LI+ ++K + D Sbjct: 827 SLVKAIGNVTKKRQLLEEEARVLYVALTRAKQKLILVGDIANLDKKVQDWSIELDQSGQL 886 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI------------------ 730 D+ L + + + + L++ +++ Sbjct: 887 SLADKLSVTNPLGFMGPALAFDKHIVINMNDISNALDQSQSVLYVEYKDSDNFEFKKDED 946 Query: 731 -------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 +L+ K + P K+ S I +E+ L ++ Sbjct: 947 KVVGDSKNNNYTMDKLISTTKKLYQFDYPFKDASETTAYQAVSEIKKAFNDPIETELENS 1006 Query: 778 Q-------------------------TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809 + G H +LQ E + I Sbjct: 1007 RLLSSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYTGDGSEKQLDYEIEELI 1066 Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857 + K +L + + + + EV S + Sbjct: 1067 KQ--KKLNPDIVPSLHKDQIQWFVHSSFAKSFWKNPENLQREVDFSSLISAKNLFKDFSD 1124 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKD 913 I++ G ID +S I +F+YKT H ++ I + QL +YE+ + + Sbjct: 1125 ANAKILVHGTIDGYFVSNDGIILFDYKTDHVNKSYLDKSINLIKEKYTGQLRLYEQAINE 1184 Query: 914 SYPNKSLVCLLIYVSEPKVFII 935 K + LI + +V + Sbjct: 1185 FGEEKVIGKYLILLDAKQVVEV 1206 >gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcus agalactiae A909] gi|77406401|ref|ZP_00783461.1| reticulocyte binding protein [Streptococcus agalactiae H36B] gi|77410683|ref|ZP_00787042.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|123601917|sp|Q3K1I4|ADDA_STRA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|76562904|gb|ABA45488.1| exonuclease RexA [Streptococcus agalactiae A909] gi|77163219|gb|EAO74171.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|77174992|gb|EAO77801.1| reticulocyte binding protein [Streptococcus agalactiae H36B] Length = 1207 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 152/917 (16%), Positives = 311/917 (33%), Gaps = 122/917 (13%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155 K+ + + ++ +K +L L L + + Y + K + +F D+ Sbjct: 329 FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 +L++ IR + + +++DE QD + Q ++ L S+ Sbjct: 389 AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 434 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ + + Q + + +I L +FRS +++L + Sbjct: 435 RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 VF+ + + + + ++ Q + V D+ + +S + +D Sbjct: 491 SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 550 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 P E A+ +A I + + + +DI +LV R Sbjct: 551 SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRT----RNDGILQ 591 Query: 396 LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + Y I V + + ++ R I + +D + V +L+SP+F F+EDD+ Sbjct: 592 TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651 Query: 455 KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 +I Q + + + SK H +K A++ S +D Sbjct: 652 RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLI 711 Query: 505 TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 I + + + L + E+ + L I +++ Sbjct: 712 WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 771 Query: 564 AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615 N V +MT+H +KGLE VF+++ + + + + Sbjct: 772 LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 831 Query: 616 -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + + + L+ +T E RLLYV MTRA +L + + Sbjct: 832 ADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 891 Query: 669 NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 + S E + W V++++ E I + + Sbjct: 892 SQTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 951 Query: 710 IAYEWSTHHPENTPL----EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762 + P N + E I + + + +++ K I P + PS + Sbjct: 952 HIGMVNPSLPFNPDNKVENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKF 1011 Query: 763 -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 K S G +H+L+Q I K ++ Sbjct: 1012 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMED 1071 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858 + NA+ + + + I + + + + E + + Sbjct: 1072 IQKALTEVNAE--TSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPES 1129 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 + ++ G ID + + I +F+YKT V + + Q+++Y + LK SY + Sbjct: 1130 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1187 Query: 919 SLVCLLIYVSEPKVFII 935 + LI + ++ ++ Sbjct: 1188 KIDKYLILLGGKQLEVV 1204 >gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcus agalactiae 2603V/R] gi|81588583|sp|Q8E061|ADDA_STRA5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|22533894|gb|AAM99760.1|AE014231_18 exonuclease RexA [Streptococcus agalactiae 2603V/R] Length = 1207 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 152/917 (16%), Positives = 311/917 (33%), Gaps = 122/917 (13%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155 K+ + + ++ +K +L L L + + Y + K + +F D+ Sbjct: 329 FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 +L++ IR + + +++DE QD + Q ++ L S+ Sbjct: 389 AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 434 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ + + Q + + +I L +FRS +++L + Sbjct: 435 RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 VF+ + + + + ++ Q + V D+ + +S + +D Sbjct: 491 SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 550 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 P E A+ +A I + + + +DI +LV R Sbjct: 551 SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRT----RNDGILQ 591 Query: 396 LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + Y I V + + ++ R I + +D + V +L+SP+F F+EDD+ Sbjct: 592 TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651 Query: 455 KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 +I Q + + + SK H +K A++ S +D Sbjct: 652 RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLI 711 Query: 505 TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 I + + + L + E+ + L I +++ Sbjct: 712 WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 771 Query: 564 AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615 N V +MT+H +KGLE VF+++ + + + + Sbjct: 772 LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 831 Query: 616 -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + + + L+ +T E RLLYV MTRA +L + + Sbjct: 832 ADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 891 Query: 669 NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 + S E + W V++++ E I + + Sbjct: 892 SQTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 951 Query: 710 IAYEWSTHHPENTPL----EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762 + P N + E I + + + +++ K I P + PS + Sbjct: 952 HIGMVNPSLPFNPDNKVENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKI 1011 Query: 763 -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 K S G +H+L+Q I K ++ Sbjct: 1012 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMED 1071 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858 + NA+ + + + I + + + + E + + Sbjct: 1072 IQKALTEVNAE--TSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPES 1129 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 + ++ G ID + + I +F+YKT V + + Q+++Y + LK SY + Sbjct: 1130 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1187 Query: 919 SLVCLLIYVSEPKVFII 935 + LI + ++ ++ Sbjct: 1188 KIDKYLILLGGKQLEVV 1204 >gi|196248138|ref|ZP_03146840.1| recombination helicase AddA [Geobacillus sp. G11MC16] gi|196212922|gb|EDY07679.1| recombination helicase AddA [Geobacillus sp. G11MC16] Length = 1242 Score = 349 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 146/1008 (14%), Positives = 327/1008 (32%), Gaps = 136/1008 (13%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99 E + L++ + +E + L S + + + E+ ++ L+++ Sbjct: 258 EKRLREDMDLIADLERRL-SGSWDELYHALQSLSFGRLPPCRGDGFDAELIDEAKSLRDQ 316 Query: 100 ----LKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 ++ +D + M + L + +A +E AK++ ++DF DL Sbjct: 317 AKKKIEALRDNVFSLHPSAWLRHMREMKPVVETIAALVRRFSAMFEAAKREKGIVDFSDL 376 Query: 153 IINTNDLLK--KRDVSAW----IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 +L+ + W + + + +L+DE QDT+L+Q +++ + Sbjct: 377 EHYCLRILRQYDPETGEWQPSSAALEYQAQFDEVLVDEYQDTNLVQETILQLV------- 429 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 K LF VGD KQSIY F AEP L + + G K I+L +FRS Sbjct: 430 KKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGGMK---IDLASNFRS 486 Query: 267 TADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 A++L + +F+ E + D +++ + V + Sbjct: 487 RAEVLDGTNFLFAQIMGEAVGEMVYDEAAQLKYGADYPEGTDAV---------PEVMIID 537 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVR 381 +Q + + + +A + +R +A I ++ + G++R +DI+VLVR Sbjct: 538 RQRTSEEDEEETAELEAAELESRLMAEKIKEIVSRPFYVYDRSSGQQRRAMYRDIVVLVR 597 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + P + + I + I +++L + I + D+ +L Sbjct: 598 SMTNAPQMIEQLQA----QGIPAAADLSSGYFQATEISVMLSLLKVIDNPYQDIPLAAVL 653 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIH 493 +SPLF F E+++ I + K + + E Sbjct: 654 RSPLFRFDENELAMIRLSDPKGTFFEALQAFCQKTAETGEEENAKEKAISFLNKLEEWRT 713 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 +A+ S D + + + G + L + + E S+ L + Sbjct: 714 MARRRSLADLIWQLYRDTQFYDFVGALPGGKQRQANLRALYDRARQYESTSFRGLFRFLR 773 Query: 553 ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 +E+ R + VR+MT+H++KGLE P+VFLV ++ Sbjct: 774 FIERLQERGDDLGAARPLGDQEDVVRVMTIHSSKGLEFPIVFLVGLSRPFYTRDLHSPYL 833 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + L + + + + E R+LYV +TRA ++L + Sbjct: 834 LDKELGFAARFVHPRLRISYPTLPLLAIQVKKRLELLAEEMRILYVALTRAKEKLYLLAS 893 Query: 668 SNTSNEK-------------------KSNQRTWYDMVYDS------------------FH 690 N ++++ +++ R++ D + + Sbjct: 894 VNDADKEIEKWKGVAAESGWLLPDDVRASARSYLDWIGRALIRHRDGRSLVEVNRPDEIA 953 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 + V + ++ ++ LE+ + + ++ ++ Sbjct: 954 SHPSVWRFEIVSAAKLRNAEVSTDREDGGALVALEQGRPVPTQGEWEEEARRRLLWRYRY 1013 Query: 751 INEPYILNPSTIDTKGK-----------------------TNLESLLSDNQTFNRGLIIH 787 E + ++ + +G +H Sbjct: 1014 GKETVVRAKQSVSELKEQQALFGEQADEWLPRKGTAPLFSRPRFMQEKTLTPAEKGTALH 1073 Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCD- 844 +++ + + + K + E + +I + + Sbjct: 1074 VVMRHLDLHAPMDESSIRSQIIRLVEKELLSAEQAETVDAAAIVAFFATDIGRRLCAARE 1133 Query: 845 SYSEVSVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHV---PQ 891 Y EV S + + +++ G +D + ++ + +YKT Sbjct: 1134 VYREVPFSLGLPADELYGSEGMESGRRLLVQGVVDCVFADERGYVVIDYKTDEVTGRFAG 1193 Query: 892 EIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + E + + Q+ +Y + ++ + C L + Sbjct: 1194 QKEEATRFLLGRYGGQMRLYRRAIEQIWRVPVAECYLYSFDGEYFLAV 1241 >gi|116629672|ref|YP_814844.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus gasseri ATCC 33323] gi|238854242|ref|ZP_04644586.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4] gi|122273390|sp|Q043G6|ADDA_LACGA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116095254|gb|ABJ60406.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus gasseri ATCC 33323] gi|238833053|gb|EEQ25346.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4] Length = 1204 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 159/936 (16%), Positives = 301/936 (32%), Gaps = 116/936 (12%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKK 143 Q+ DL ++LKK F + ++ + KS T+ L + + K++ Sbjct: 299 QDSQDLKLDLNDQLKKIFASFFVVEEKEQIAVLQKSEKIVKTIVAAEKKLIQKFSQLKRE 358 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 ++D+ D+ +L +A I + ++ N ILIDE QD + +Q +I+++ Sbjct: 359 QNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIKAI--- 415 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 TLF VGD KQSIY F A P L + K I L Sbjct: 416 ------KKKGQNTLFMVGDVKQSIYGFRQARPDLFLSKYHTYGKD-----NDSEKIILAD 464 Query: 263 SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRST + V+ +F+ N G+ ++ +S + + Sbjct: 465 NFRSTKRVTKTVNDLFNPILTTNFGGIDYKKEGQLQFGASY---------YPSDLPTASE 515 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 ++ S ++ + + + I + + + + KR ++ DI Sbjct: 516 YIFTDKKQTQSAYEDQYGDEMDFSEVQMVIARIKQLKAENFQVWDRRTQLKRPLEYSDIA 575 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 ++ R R D + + D + +M R I + + D+ Sbjct: 576 IITRTRSD----NLQVMQEFAKADLPLFVTDAQNYFQTFELIMIMNYLRLIDNPQQDIPL 631 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIHIA 495 V +++SPLFNF E ++ +I + + K + ++ + L A Sbjct: 632 VAVMRSPLFNFKEPELAQIRVKTPAGNFYTALTSFASVNSSLGKKCKEFLQQLETLRSFA 691 Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + I + G + L+ E + L + IS + Sbjct: 692 ATHRISELIWSIYEKTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFI 751 Query: 555 EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 E+ N V++MT+H +KGLE P+VF++ G Q + I Sbjct: 752 ERMRKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPIVFVMGLGHQYQTRDLSGNFTI- 810 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 ++ G+ I + + + S ++ EE R+LYVG+TRA +LI+ N Sbjct: 811 --SQNELGLTIKEKNYRIDSLVKSLADVQKRQQMLEEEARILYVGLTRAQQKLILVASVN 868 Query: 670 TSNEKKSNQRTWYDM-----------------------VYDSFHNDERVKKIKLTNSINK 706 K+ + D + D+ ++ + Sbjct: 869 EIENKRKKWVSELDQKKDIIPLVKKINAQSPLDFLGPKLEQKHEFDQTIRDMTSALEEQD 928 Query: 707 DEWIAYEWSTHHPENT--------------------------PLEREETIKQLMDEQKIP 740 + PE P E +I Sbjct: 929 KLYYLKFNLDLEPEKIKDQNEDSQEVNSNVNKVVKELYNFKYPFEDATKTTAYQSVSEIK 988 Query: 741 KKLFSPIKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798 K PI ++ +++ S + +T G +H +LQ Sbjct: 989 KAFNDPIDTELENSRLISSSNRYLQPIDETPTFLEGQKFTGAEIGTAMHLVLQYYNYEGN 1048 Query: 799 HKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS-- 852 ++N + +L + E S Sbjct: 1049 KDQENLDQEIDQLVELGKLNSLMVPHLSKEALNWFVMSDFAKEFWKQPDKLHRESQFSSL 1108 Query: 853 -------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHI 901 + P +++ G +D ++ + +F+YKT E I + Sbjct: 1109 VNASELFNDFSDPSAKVLVHGTVDGYFEAKDGLILFDYKTDFVDKTNEEQAIEKIKQKYT 1168 Query: 902 AQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIP 936 QL +YE+ L + +K + LI + KV + Sbjct: 1169 GQLRLYEQALNEMNNDKKVIGKYLILLDARKVVPVD 1204 >gi|315924912|ref|ZP_07921129.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621811|gb|EFV01775.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter alactolyticus ATCC 23263] Length = 1178 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 164/953 (17%), Positives = 313/953 (32%), Gaps = 121/953 (12%) Query: 63 EERFSLLSSFFLTQK-----FTPQKNIITQEINK----KSPDLKEKLKKSQDEFIKIRDR 113 + + + T K + + + +I +K+ +K+ + ++ + Sbjct: 268 ADEWQVFQQALQTFKFDSYSGSKEDKETSNKIKDLRTATIKPIKDLVKQFKRPLPEMLED 327 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 M A + L K + + KK+ +LDF D+ +L ++ + Sbjct: 328 LQA--MAAPMTALIDLTKAFDTEFARLKKEREMLDFHDIERYAQAILANDTIAVT----L 381 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 + + IDE QDT+ +Q ++ + F VGD KQSIY F A+ Sbjct: 382 QKRYIQVFIDEYQDTNAVQEAILSRV-----------RRADNYFMVGDVKQSIYRFRQAD 430 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P + + + QK+ A +I L +FRS I+ V+ VFS + + Sbjct: 431 PTIFIEKYQRFQKQGRAAD---RLITLGQNFRSNQGIIDCVNDVFSRIMSPELGEIAYDD 487 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 + E + + AR IA I Sbjct: 488 EAALICGLADSTHPAEPAEL------------------HVLQASASNHIEAEARYIAGRI 529 Query: 354 SNMIGTDT-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 M+G + I G R ++ +DI VL+R + D I + Sbjct: 530 HEMVGKEQWIAKEGVSRPLRYRDIGVLMRSVSSK---GETVARILADAGIPTYFDAGASY 586 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--EYI 470 + I + L R I + + DL + +++SP+ FS++++ I E Sbjct: 587 YQSIEIIVFLNLIRVIDNYQQDLPLLSVMRSPIGRFSDEELAAIRIGAKNRPFYQSLEAA 646 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K + + ++ A S DF + + G + L Sbjct: 647 AETKTALGQKARMFLDHLERWRKFAYTQSVADFLWRLYLETGYYTAVGALPGGEQRQKNL 706 Query: 530 DEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGL 583 L + + + + + Q S N + VRIMT+H +KGL Sbjct: 707 RVLLQRASDYQTATLHGVFQFPDYAQPLTKRRQGDVMTPSILSENDDVVRIMTIHKSKGL 766 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL D G K+H L P + + + + +K + Sbjct: 767 EFPVVFLADCGKGANLKNATGKVHFHQKLGICPKWIDPSAKLYHDTLATTLVQEQVKTES 826 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-----------------TWYDMVY 686 E RLLYV MTRA +LI+ ++K ++ D + Sbjct: 827 LSEEIRLLYVAMTRAMAKLIMVGSVTDLEKEKERWEKPCMVGNLKKGRQGSGVSYLDWLM 886 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + + + K E E + E + KQL + ++ + Sbjct: 887 MACYRPGAAQNSVSPALKIKIE-EETTREAVTQERPIQQLELSSKQLQEIKRRLSWHYQS 945 Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLL------------SDNQTF--------NRGLII 786 P L+ + ++ + + + G I Sbjct: 946 AGRP--APSKLSVTQVEHLRENPDRGADALIEIPERMAKPAFMEAAGLRHWQPSELGSGI 1003 Query: 787 HKLLQVIFTL-------PEHKRKNFITSYCTKNAKL--WPAKEYKNL-LLSITRLLENPM 836 H LLQ I + + + + + A+L A K L L + RL+ +P+ Sbjct: 1004 HTLLQRIDLDGIRACGGDTAQIADAVRAEAARLAELGILEAALVKALDLRPVVRLMGSPI 1063 Query: 837 MTTAMSC-DSYSEVSVSGKINCP-------KKDIIISGRIDQISISQQNIFIFEYKTHH- 887 + E+ + + ++ +++ G ID I + +YKT Sbjct: 1064 GKRLLQAVTCRRELPFNLAVPGRRINPIYGEETVLLQGMIDCCFIEDDRWILLDYKTDRW 1123 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIPQNK 939 H + + + + Q+ YE+ L + + L++++ + + + Sbjct: 1124 HSQEARDRLIARYQIQIDFYEQALAAI-TGRPVAEKYLLFITMGEAVRLSPAE 1175 >gi|323464966|gb|ADX77119.1| exonuclease RexA [Staphylococcus pseudintermedius ED99] Length = 1214 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 153/1013 (15%), Positives = 326/1013 (32%), Gaps = 145/1013 (14%) Query: 32 NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE--- 88 Y + P + + +Q + E+ + P K +E Sbjct: 233 EAYHQFELVGDFPKHIDFIEGHRQFLRRLLSEQLIDKTALATYQLGRIPPKPKAVKEDPM 292 Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRF----------NTYKMFKSTLASLTLAKYLNAHYE 138 ++ + K ++ ++ ++ F + TL + + + Sbjct: 293 LDAAYENFKAHYEQFKNNLNAVKSTFVGRDDETLLEELQHLAPRVKYLATLTEDVIHAFS 352 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 AK+ +LDF D +L+ + I + IL+DE QDT+ +Q +I Sbjct: 353 RAKRARNILDFSDYEHFALQILRDEQGEPSEIAALYRERFEEILVDEYQDTNRVQESIIG 412 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 S+ S LF VGD KQSIY F A+P + + + + Sbjct: 413 SIKR-------GDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFNQ---PDQSSGWR 462 Query: 258 IELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 I+L +FRS ++L+ + +F +A + D+ + + + VQ + Sbjct: 463 IDLSQNFRSRKEVLSTTNYLFDHMMDAEVGEIDYDAAAKLYYGAPYDEVDIPVQFNVLM- 521 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQA 373 D + +++ A IA + ++ T ++ G R Q Sbjct: 522 -----------------VDKDREMTASEQEAYFIAQQVQTILETQKVYDPKTGAYRPAQY 564 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 KDI++L R + LI + D I + N + + I+ +++ R I + Sbjct: 565 KDIVILERSYSNVRLIQQAFK----DQDIPLFVNSKQGYFEQTEIRLMLSFLRTIDNPLQ 620 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKY 487 D+ V +++S ++ F+ED++ KI + Y+ IQ + + + K + + Sbjct: 621 DIYLVGLMRSVIYQFTEDELAKIRIVSPQDNYFYQSIQHYMDDEAADPAIVAKLKPFLND 680 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSS 546 + +Q + + Q F + G L N + E +S+ Sbjct: 681 LARYQDYSQRHPVYQLIDKLFNDHYIIQYFSALVGGRGRRANLHGLFNKAVDFENSSFRG 740 Query: 547 LQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I ++Q K N N VR+MT+H++KGLE P V + Sbjct: 741 LFQFIRFIDQMIERGKDFGEENVIGPNDNVVRMMTIHSSKGLEFPFVIYSGLTRDFNKND 800 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 K + + + I + +K E RL+YV +TRA +Q Sbjct: 801 LGKPVVLNQHAGLGLQYYDEAQGLFYPSLISMSIDLINQKELISEEMRLMYVALTRAKEQ 860 Query: 662 LIICKHSNTSN------------------------------------------EKKSNQR 679 L + S ++ ++ Sbjct: 861 LYLIGTSKKADALEMMAAATITDEKLAAIDRFNAKNPFQLIYSILSKHQNTNIQRHQRFE 920 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 + + + +++ I + + ++ +A + + ++ + Sbjct: 921 VDVETLDAAVKPRLQLQHIDAGDVLPTEQDLATYQGHAIEALEARLAATPLDDELAQRVM 980 Query: 740 PKKLF-SPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSD 776 + L+ P + + + + S + + Sbjct: 981 QQLLYVYPYQQAVQQVSKQSVSELKRQLDTEQADTNYERVRQYRLGVATYERPQFLQEQQ 1040 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLE 833 + G ++H ++Q + + Y + A + + + I R ++ Sbjct: 1041 HTAAEVGTLMHTVMQHLPFKEAGLTDQALNDYIESLVERSIIRAHDVNVIVIEEIKRFIQ 1100 Query: 834 NPMMTTAM-SCDSYSEVSVSG------KINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + + S + Y+E+ II G ID + + + +YKT Sbjct: 1101 SDLYDRIARSDEVYTELPFVVNQHQVEHTPDTTDASIIQGMIDLVFKENGHYYFLDYKTD 1160 Query: 887 HH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + + Q+ Y++ L+ + L + ++ Sbjct: 1161 ALIRRKGMSDEALERQLKEKYRVQMQYYQRALETIL-KCPVNGYLYFFKYGEL 1212 >gi|257892416|ref|ZP_05672069.1| UvrD/REP helicase [Enterococcus faecium 1,231,408] gi|257828795|gb|EEV55402.1| UvrD/REP helicase [Enterococcus faecium 1,231,408] Length = 924 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 153/941 (16%), Positives = 304/941 (32%), Gaps = 124/941 (13%) Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +++ KS + T K + + + K++ VLDF DL Sbjct: 3 QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 62 Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L ++ W+ ++ +++DE QD + +Q ++ L E + Sbjct: 63 QILTEKTKDVWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 115 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIYSF A+P + + K+ + I L +FRS ++L+ Sbjct: 116 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 170 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + +F + + + Q +++ Q + E T Sbjct: 171 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 230 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390 E + I +I + + + K R I+ KDI++L +K+ I Sbjct: 231 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 286 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + L I + ND I+ +++L + I + D+ +L+SP+ E Sbjct: 287 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 342 Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ I + V Y + +K +H K + +A+ S D I Sbjct: 343 PELASIRLANRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDI 402 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + G + L ++ EQ+S+ L + + +E+ K Sbjct: 403 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 462 Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT+H +KGLE PVVFL+D + + L Sbjct: 463 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 522 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673 + + + E R LYVG+TRA +L I + Sbjct: 523 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 582 Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704 + + + + + ++K + Sbjct: 583 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 642 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + N + +E L D + P + + S I Sbjct: 643 QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 702 Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791 + ++ S G H LLQ Sbjct: 703 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 762 Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848 ++ +P + + + + K + SI + + ++ + E Sbjct: 763 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 822 Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895 S + + +++I G +D + ++ I+++KT P EI+ Sbjct: 823 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 882 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 I + QL +Y++ + ++ NK + LI + ++ I Sbjct: 883 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 922 >gi|295424857|ref|ZP_06817572.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM 11664] gi|295065423|gb|EFG56316.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM 11664] Length = 1199 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 164/972 (16%), Positives = 312/972 (32%), Gaps = 121/972 (12%) Query: 54 QQASQTQCIEERFSLLSSFFLTQKFTPQKN-IITQEINKKSPDLKEKLKKSQDEFIKIRD 112 + + E L S + P+K+ +++ + ++ +++++ I Sbjct: 260 KGLNDDLDYNELRERLRSCIF--ELKPRKSSKWDEDLQEFYQTTQDLKAEAKNQIFDIFT 317 Query: 113 RFNTYKMFKSTLASL----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 F + + L H+ E K +LD+ D+ +L Sbjct: 318 AFFASDEDEQIKVMHHGQKIMKTIVKAEEALIKHFGELKAAENLLDYSDMEQFAYQILSS 377 Query: 163 RDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 ++ R + IL+DE QD + +Q +I+++ + T+F VGD Sbjct: 378 DTSNASLARDFYRDKFKEILVDEYQDINPLQENIIQTIKDK---------DKNTVFMVGD 428 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 KQSIY F AEP L++ ++ + I L +FRST + +V+ +F Sbjct: 429 VKQSIYGFRQAEPSLFLKKYHDFGQK---SDSSQERILLSDNFRSTRPVTKIVNHLFKPL 485 Query: 282 ENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 + G+ S + ++ + + Q ++ S S D Sbjct: 486 LSRNFGGIDYKSEGQLVFGANY---------YPAHLDQACEVIFHEKSSANSDDDQDIDF 536 Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 S ++ RI + + GK R + DI +L R R D Sbjct: 537 SEIQMVINRIKHFEKEKL-QVFDSHMGKLRPFRYSDIAILTRSRSD----NLQIMQEFAK 591 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 + + D + +M + I + + D+ V +L+SPLF F E D+ KI + Sbjct: 592 NDLPLFVTDAQNYFQTFELTIMMNYLKIIDNPDQDIPLVTVLRSPLFGFDEKDLAKIRIK 651 Query: 460 RHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 +T + + + + + L A + I + Sbjct: 652 NKQTSFYSALLAYVASNDSLSQRIKDFLNKLDSLRDFAATHRISELIWSIYERTNLLEIM 711 Query: 518 IS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNE 571 + G + L+ E + + L + I+ + Q N Sbjct: 712 TALPNGQQRRVNLEALYERANSYESSGFKGLYQFINFINRMRRSQKDLAQPLLTKEAGNA 771 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 VR+MT+H +KGLE P+VF V + I S G+ I + + + Sbjct: 772 VRLMTIHGSKGLEFPIVFYVGMEHHYQMRDLTRNYVITGSSL---GLTIKESKYCLDSLV 828 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---VYDS 688 + + KK EE R+LYV +TRA +L++ ++K + + ++ + + Sbjct: 829 KAIDNVNKKKQLLEEEARILYVALTRAKQKLVMVGDIANFDKKVQSWKNKLNLKDKLSLA 888 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE---------REETIKQLMDEQKI 739 + ++ D IA + + P E + + + +++ Sbjct: 889 DKLSSNSALSFIGPALAFDRHIAQKMNDISPAIDQTEDLIYIKYDDQLKPVPNGQEDKTN 948 Query: 740 PKK-------------LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--------- 777 + P + S I L++ L ++ Sbjct: 949 NDEYDLLNETTKKLFNFTYPFNDASKTTAYQAVSEIKKAFNDPLDTDLENSHLIASTNRY 1008 Query: 778 ----------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 G H +LQ + + K Sbjct: 1009 LQPIDDKPNFLFETKFTGAEIGTATHLILQYYDYCDRQEGQLADEIKTLITQKKLNPDIV 1068 Query: 822 KNLLLSITRLLENPMMTTAMSCD---SYSEVSVS---------GKINCPKKDIIISGRID 869 ++ N EV S + P I++ G ID Sbjct: 1069 PSIHQDQINWFVNSDFAQEFWKHPDRLKREVDFSSLLSAKTLFKDFSDPNAKILVHGTID 1128 Query: 870 QISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLV-CLL 924 I +F+YKT H +E I + QL +YEK L + + K++ L Sbjct: 1129 GYYEDHDGIILFDYKTDHVDQTHLERAIAAIKAKYAGQLRLYEKALTE-FSGKNVKSKYL 1187 Query: 925 IYVSEPKVFIIP 936 I + KV + Sbjct: 1188 ILLDAKKVVKVD 1199 >gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease subunit A [Geobacillus thermodenitrificans NG80-2] gi|251764525|sp|A4IKW7|ADDA_GEOTN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134265776|gb|ABO65971.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans NG80-2] Length = 1242 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 146/1008 (14%), Positives = 327/1008 (32%), Gaps = 136/1008 (13%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99 E + L++ + +E + L S + + + E+ ++ L+++ Sbjct: 258 EKRLREDMDLIADLERRL-SGSWDELYHALQSLSFGRLPPCRGDGFDAELIDEAKSLRDQ 316 Query: 100 ----LKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 ++ +D + M + L + +A +E AK++ ++DF DL Sbjct: 317 AKKKIEALRDNVFSLHPSAWLRHMREMKPVVETIAALVRRFSAMFEAAKREKGIVDFSDL 376 Query: 153 IINTNDLLK--KRDVSAW----IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 +L+ + W + + + +L+DE QDT+L+Q +++ + Sbjct: 377 EHYCLRILRQYDPETGEWQPSSAALEYQAQFDEVLVDEYQDTNLVQETILQLV------- 429 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 K LF VGD KQSIY F AEP L + + G K I+L +FRS Sbjct: 430 KKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGGMK---IDLASNFRS 486 Query: 267 TADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 A++L + +F+ E + D +++ + V + Sbjct: 487 RAEVLDGTNFLFAQIMGEAVGEMVYDEAAQLKYGADYPEGTDAV---------PEVMIID 537 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVR 381 +Q + + + +A + +R +A I ++ + G++R +DI+VLVR Sbjct: 538 RQRTSEEDEEETAELEAAELESRLMAEKIKEIVSRPFYVYDRSSGQQRRAMYRDIVVLVR 597 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + P + + I + I +++L + I + D+ +L Sbjct: 598 SMTNAPQMIEQLQA----QGIPAAADLSSGYFQATEISVMLSLLKVIDNPYQDIPLAAVL 653 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIH 493 +SPLF F E+++ I + K + + E Sbjct: 654 RSPLFRFDENELAMIRLSDPKGTFFEALQAFCQKTAETGEEENAKEKAISFLNKLEEWRT 713 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 +A+ S D + + + G + L + + E S+ L + Sbjct: 714 MARRRSLADLIWQLYRDTQFYDFVGALPGGKQRQANLRALYDRARQYESTSFRGLFRFLR 773 Query: 553 ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 +E+ R + VR+MT+H++KGLE P+VFLV ++ Sbjct: 774 FIERLQERGDDLGAARPLGDQEDVVRVMTIHSSKGLEFPIVFLVGLARPFYTRDLHSPYL 833 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + L + + + + E R+LYV +TRA ++L + Sbjct: 834 LDKELGFAARFVHPRLRISYPTLPLLAIQVKKRLELLAEEMRILYVALTRAKEKLYLLAS 893 Query: 668 SNTSNEK-------------------KSNQRTWYDMVYDS------------------FH 690 N ++++ +++ R++ D + + Sbjct: 894 VNDADKEIEKWKGVAAESGWLLPDDVRASARSYLDWIGRALIRHRDGRSLVEVNRPDEIA 953 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 + V + ++ ++ LE+ + + ++ ++ Sbjct: 954 SHPSVWRFEIVSAAKLRNAEVSTDREDGGALVALEQGRPVPTQGEWEEEARRRLLWRYRY 1013 Query: 751 INEPYILNPSTIDTKGK-----------------------TNLESLLSDNQTFNRGLIIH 787 E + ++ + +G +H Sbjct: 1014 GKETVVRAKQSVSELKEQQALFGEQADEWLPRKGTAPLFSRPRFMQEKTLTPAEKGTALH 1073 Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCD- 844 +++ + + + K + E + +I + + Sbjct: 1074 VVMRHLDLHAPMDESSIRSQIIRLVEKELLSAEQAETVDAAAIVAFFATDIGRRLCAARE 1133 Query: 845 SYSEVSVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHV---PQ 891 Y EV S + + +++ G +D + ++ + +YKT Sbjct: 1134 VYREVPFSLGLPADELYGSEGMESGRRLLVQGVVDCVFADERGYVVIDYKTDEVTGRFAG 1193 Query: 892 EIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + E + + Q+ +Y + ++ + C L + Sbjct: 1194 QKEEATRFLLGRYGGQMRLYRRAIEQIWRVPVAECYLYSFDGEYFLAV 1241 >gi|56417018|ref|YP_154092.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries] gi|56388250|gb|AAV86837.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries] Length = 867 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 182/641 (28%), Positives = 314/641 (48%), Gaps = 34/641 (5%) Query: 38 SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNII---TQEINKKS 93 +++ G+ K + L + T+ E + S F+ + +K+I T+ I ++ Sbjct: 217 ALKCGSTRDQKIGKRLSTWNTSTRRSPEEVAEYLSIFINLQSLAKKSISSIVTKGILEQF 276 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 PD+ ++ Q+ ++ ++F T ++ K T + +A+ A YE+ KK + LD+ D+I Sbjct: 277 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 336 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T DL+ D W+ +++D EI+HIL+DE QD SL QW ++ +L +FF G + ++ Sbjct: 337 GLTLDLMLHPDCKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSSNNK 396 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIY F A P R + I+L SFRS IL + Sbjct: 397 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 452 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VD+VF+ + + I+H + R G V++W + ++ + E Sbjct: 453 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRRKLYAWDELEVETG 509 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + +LA+ +A +I I + I K R ++A DIL+LVR+R ++ Sbjct: 510 TPHATDH--LLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVDYI 563 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 + V G DRF + D++AI+DL+ LG F+L E+D++ +LKSP+F ++ D+ Sbjct: 564 IAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDHDL 623 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + R + +++ +Q FA F + Y+ LI+ ++ +P D + L+L Sbjct: 624 LNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLVSLINASKTRAPLDLYCLVLSEH-- 676 Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 R++ + G +++DEF+N + N+ ++L+ I ++ P +K + + + R Sbjct: 677 REKLLQHPGQASAEIVDEFMNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINTSEDVAR 736 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MTVH AKG++SP+VFL DT + + + D PIW N Sbjct: 737 VMTVHNAKGMQSPIVFLPDTTNVPR--------CELQLIFDAENTPIWCAG--DTNARCR 786 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 DL ++ EY RLLYV MTRA D+L + + Sbjct: 787 DLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 827 >gi|319744909|gb|EFV97242.1| ATP-dependent nuclease subunit A [Streptococcus agalactiae ATCC 13813] Length = 1208 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 153/917 (16%), Positives = 312/917 (34%), Gaps = 122/917 (13%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155 K+ + + ++ +K +L L L + + Y + K + +F D+ Sbjct: 330 FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 389 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 +L++ IR + + +++DE QD + Q ++ L S+ Sbjct: 390 AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 435 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ + + Q + + +I L +FRS +++L + Sbjct: 436 RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 491 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 VF+ + + + + ++ Q + V D+ + +S + +D Sbjct: 492 SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 551 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 P E A+ +A I + + + +DI +LV R Sbjct: 552 SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRTR----NDGILQ 592 Query: 396 LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + Y I V + + ++ R I + +D + V +L+SP+F F+EDD+ Sbjct: 593 TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 652 Query: 455 KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 +I Q + + + SK H +K A++ S +D Sbjct: 653 RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKIFQTWRDFAKWHSLYDLI 712 Query: 505 TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 I + + + L + E+ + L I +++ Sbjct: 713 WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 772 Query: 564 AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615 N V +MT+H +KGLE VF+++ + + + + Sbjct: 773 LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 832 Query: 616 -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + + + L+ +T E RLLYV MTRA +L + + Sbjct: 833 ADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 892 Query: 669 NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 + S E + W V++++ E I + + Sbjct: 893 SQTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 952 Query: 710 IAYEWSTHHPENTPLERE----ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762 + P N + E E I + + + +++ K I P + PS + Sbjct: 953 HIGMVNPSLPFNPDNKAENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKF 1012 Query: 763 -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 K S G +H+L+Q I K ++ Sbjct: 1013 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKKDPAALGSAVHELMQRIEMSSHVKMED 1072 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858 + NA+ + + + I + + + + E + + Sbjct: 1073 IQKALTEVNAE--TSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPES 1130 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 + ++ G ID + + I +F+YKT V + + Q+++Y + LK SY + Sbjct: 1131 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1188 Query: 919 SLVCLLIYVSEPKVFII 935 + LI + ++ ++ Sbjct: 1189 KIDKYLILLGGKQLEVV 1205 >gi|331002448|ref|ZP_08325966.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410264|gb|EGG89698.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str. F0167] Length = 1148 Score = 348 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 153/892 (17%), Positives = 299/892 (33%), Gaps = 94/892 (10%) Query: 87 QEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145 + + D KL + + ++ + K A + L K A + E K++ Sbjct: 288 KALRDNYKDTISKLAQEYLFDKERLLEEEGKEKS--KVRAIVDLTKKYIALFNEKKREKN 345 Query: 146 VLDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 ++DF D+ LL + + +E + I IDE QD++ +Q ++ ++ Sbjct: 346 LVDFSDIEHLALGILLDEDKKPTEVALSYKREFSEIYIDEYQDSNYLQEAIVMAI----- 400 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA--GQKFSIIELPL 262 +F VGD KQSIY F A P+ + + + G+ + L Sbjct: 401 -------EKNNIFMVGDVKQSIYGFRQASPELFMDKYKRFSHFKNTNLEGEDAKKVILSK 453 Query: 263 SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS ++L + +F E+ G+ D + + + Sbjct: 454 NFRSRNNVLKSANIIFKKVMKEDIGGIEYDDDAALYPGADF----------------EEG 497 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + T SS + AR IA I + R ++ DI++LV Sbjct: 498 NEYISEIMLTETGGIEDDTSSIELEARAIAQRIKELKSE---LRVDGGRKLRYSDIVILV 554 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R I + ND I + ++ ++A+ I + D+ Sbjct: 555 RTN-----IGEGIAKVLNDENIPAYAENNKGYFKTFEVRKILAVLAAIDNPYSDVDLCAF 609 Query: 441 LKSPLFNFSEDDIFKI--------CTQRHETETVYEYIQ------KFANCGISKFQHVIK 486 L S L ++ ++ I ++ E + + I + K Q+ IK Sbjct: 610 LNSSLVGITDLEMANIVSDYRKAQNIEKSEKIRMMDAILYENESGDISEETRKKIQNAIK 669 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYS 545 ++++ + + + I + G + L +N + YS Sbjct: 670 FLNKYRKKSAYMNIAALLQDIYNETDFLNLISAMPGGQVRRANLMLLINKAGTFSNSGYS 729 Query: 546 SLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L I + + N + VRIMT+H +KGLE PV FL Sbjct: 730 GLYNFIRYISKLKDFDNDFGEASILSENDDIVRIMTIHKSKGLEFPVCFLACANKLFNKM 789 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + M I K + + + L E R+LYV +TRA + Sbjct: 790 DLKQGMVIDSEFGLGVQYVDSKKNIKDSSIKQNVIKHKLNADLMGEELRVLYVALTRAME 849 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 ++II ++ + + + N + ++++ D E Sbjct: 850 KMIISGSCKDVDKALEKNKDNPNFLDIRSCNSYLDMILLSFDNVHFDIRKYDYTMLLKEE 909 Query: 721 NTPLEREETIKQLMDEQKIPK--------KLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + ++ + I + P +I+ + S I ++ Sbjct: 910 KETQKEVGDLHKVFESIDIKEHNILKNRLDYVYPYFENIDLKTKFSVSEIKKLSQSEEFE 969 Query: 773 LLS-------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL- 824 + + RG HKLLQ + + + I + + L K+Y+ L Sbjct: 970 IKDVKRAKSNSSDASERGNAYHKLLQKM-HYENIGKFSDIKDFIREEISLLKNKKYRELI 1028 Query: 825 -LLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCP-------KKDIIISGRIDQISIS 874 + I + L + + E ++ + I+I G ID + Sbjct: 1029 DIDDIVKFLNTNLGGEFVKQHQNLKRENQFIMGLSAKEAGMGSSDETILIQGVIDAYIEN 1088 Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + I + +YKT + + + + +QL +Y+K L+ K++ + IY Sbjct: 1089 ENGIILVDYKTDNV--NNEDVLINRYRSQLMLYKKSLE-MSTGKTVQTVYIY 1137 >gi|304317472|ref|YP_003852617.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778974|gb|ADL69533.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1088 Score = 348 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 165/914 (18%), Positives = 311/914 (34%), Gaps = 98/914 (10%) Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS----LTLAKY 132 K P K ++ + + L ++K++ + + + +ST A + + K Sbjct: 173 KKYPSKIVVNGKFEAELISLMNRIKETGLRIDDV-KLYEGEEYDESTKAMELLTVRIIKK 231 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 ++ Y+ KK+ +LDF DL I LL R + +IL+DE QD + IQ Sbjct: 232 IDEEYDRFKKERNLLDFNDLEIAALKLLSDDSK----RDSYFERYKYILVDEFQDINQIQ 287 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +I L E V LF VGD KQSIY F G + RI ++ Sbjct: 288 KRIILKLAEKNGVIPEGR-----LFIVGDYKQSIYGFRGTD-------YRIFEEFCEKIK 335 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQG--------LSEDSTTTIRHRSSRIGQ 304 ++ ++ L +RST +I+ V+ VF I + I Sbjct: 336 KEGDVLNLSNCYRSTKNIICTVNSVFKNLLEPYEELKYLNDTEEGPKVELITYNKQNIAD 395 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 + ++ + ++ + D ES IA I ++ Sbjct: 396 P-RNERFQSIKKLLKDDSKSEELHESLMKDIKKSESKRDFQGSIIASRILKLLDEG---- 450 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + +DI +L+R R + Y I D I D+++L Sbjct: 451 ------YKYEDIAILLRSRTGLESVENAL----LKYGIPYCVIGGIGFWDKSEIIDIISL 500 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--TQRHETETVYEYIQKFANCGI---S 479 + + D ++ + +L+SP+F FS+DD++ + + E ++K Sbjct: 501 YKLVFDMSDKIALLVVLRSPIFGFSDDDVYNLMSIYNDEGLSNILEALEKLTCINRSNEW 560 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538 + E+ ++ ++ F IL ++ IS G + +++ Sbjct: 561 IIVRAYNILKEISNLNGIYGAYEIFEKILDLVDYKKLLISLPNGYQKYRNIEKLEKIIKD 620 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDT 593 + ++L+ L + + V+I+T+H +KGLE V + D Sbjct: 621 FTDKDIFNARDLVEYLSSFKEFSGLDSEAFLDTEESDAVKILTIHASKGLEFEAVIIPDM 680 Query: 594 G---SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 V + M G+ K N+ + +E RL Sbjct: 681 DKATDGVSIRHNHLFMLSEDGYMYGIGVNEEGELDKEANSRYKSAYDEYLERENQESRRL 740 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDE-RVKKIKLTNSINK 706 YV TRA L + N+ ++ ++ + D+ + + + + Sbjct: 741 FYVASTRAKRFLAFIGQEKNKTSELQNETALNSFMKQLFYAMDIDDIDIAVLNGNDLLMY 800 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQ-------KIPKKLFSPIKNDINEPYILNP 759 D I S E L+ + I ++ + L P LN Sbjct: 801 DRNIKICKSYDKSEIGKLKNDNLIAEIPLKPQGNISITAYIDYLSCPKLYYYKYIAALND 860 Query: 760 STIDTKGKTNLESLLS--DNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKL 815 I+ + K + D RG I+H++L+ I KN I N Sbjct: 861 EYIEEQLKNDDFYEYDALDIDALERGTIVHRILENISILDSNASSPKNGIDGIDVDNGIK 920 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ--ISI 873 Y ++ ++L+ ++ S +E + +++ ++G ID+ I Sbjct: 921 KYIDNYFKIIKEHRKVLKGKLLK------SLNEYRFRVLL---DENLNLNGVIDRIDIYE 971 Query: 874 SQQNI--FIFEYKTHHHVPQEI-EHIPYTHIAQLSIYEKILKDSYPNKSLV--------C 922 + I +IF+YKT+ + E + + Q+ Y L KS+ Sbjct: 972 NDGEIEAYIFDYKTNKINNDDEIEEVVNHYKPQIHAYSYALNKL---KSISGYTPSLKGA 1028 Query: 923 LLIYVSEPKVFIIP 936 L + K + Sbjct: 1029 FLYLLDVGKYIEVD 1042 >gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein [Streptococcus agalactiae COH1] gi|77173434|gb|EAO76553.1| reticulocyte binding protein [Streptococcus agalactiae COH1] Length = 1207 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 151/917 (16%), Positives = 309/917 (33%), Gaps = 122/917 (13%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155 K+ + + ++ +K +L L L + + Y + K + +F D+ Sbjct: 329 FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 +L++ IR + + +++DE QD + Q ++ L S+ Sbjct: 389 AIQILEENHD---IRQIYQDKYHEVMVDEYQDNNHTQERILELL-----------SNGHN 434 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P+ + + Q + + +I L +FRS +++L + Sbjct: 435 RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 VF+ + + + + ++ Q + V D+ + +S + +D Sbjct: 491 SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 550 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 P E A+ +A I + + + +DI +LV R Sbjct: 551 SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRTR----NDGILQ 591 Query: 396 LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + Y I V + + ++ R I + +D + V +L+SP+F F+EDD+ Sbjct: 592 TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651 Query: 455 KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 +I + + + SK + +K A++ S +D Sbjct: 652 RIAIHDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDYFMKTFQTWRDFAKWHSLYDLI 711 Query: 505 TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 I + + + L + E+ + L I +++ Sbjct: 712 WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 771 Query: 564 AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615 N V +MT+H +KGLE VF+++ + + + + Sbjct: 772 LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 831 Query: 616 -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + + + L+ +T E RLLYV MTRA +L + + Sbjct: 832 ADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 891 Query: 669 NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 + S E + W V++++ E I + + Sbjct: 892 SQTKWADHYDLVSENNYLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 951 Query: 710 IAYEWSTHHPENTPLERE----ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762 + P N + E E I + + +++ K I P + PS + Sbjct: 952 HIGMVNPSLPFNPDNKAENRQSEDIVHAISVLESVEQINQTYKAAIELPTVRTPSQVKKF 1011 Query: 763 -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 K S G +H+L+Q I K ++ Sbjct: 1012 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMED 1071 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858 + NA+ + + I + + + + E + + Sbjct: 1072 IQKALTEVNAETSIKAAIQ--IEKINYFFQENSLGKYIQEEVEHLHREAPFAMLKEDPES 1129 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 + ++ G ID + + I +F+YKT V + + Q+++Y + LK SY + Sbjct: 1130 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1187 Query: 919 SLVCLLIYVSEPKVFII 935 + LI + ++ ++ Sbjct: 1188 RIDKYLILLGGKQLEVV 1204 >gi|291523612|emb|CBK81905.1| recombination helicase AddA, Firmicutes type [Coprococcus catus GD/7] Length = 1228 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 148/1020 (14%), Positives = 314/1020 (30%), Gaps = 145/1020 (14%) Query: 26 FQVSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT--QKFTPQK 82 + + + +E G L + ++ Q E + K P+ Sbjct: 225 KYLPLFEEARAFCLEPNGVEAYLPVIEDDKKWFQMLGESEDYDGSREILHKIVWKRLPRT 284 Query: 83 NII-TQEINKKSPDLKEKLKKSQDEFIK-----IRDRFNTYKMFKS--TLASLTLAKYLN 134 +I +K ++ K + + + + L + Sbjct: 285 AASVDPKIKEKVKEIHADFKSEIEGLRDGYFVHTFEELKAELTYIRPSVRMLIELTEVFG 344 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDV---------SAWIRYKIDQEINHILIDEV 185 + K +LDF DL LL ++ + ++ DE Sbjct: 345 QQFMAVKNDRNMLDFSDLEHYMLQLLADFSEDEQGQMQVKPTSAADELSEFYEEVVCDEY 404 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QD++ +Q ++ L+ + F VGD KQSIY F A+ + + Sbjct: 405 QDSNQVQELILSLLSRE-------RKGQYNRFMVGDVKQSIYRFRLADAAIFMEKYHHYA 457 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIG 303 + + I+L +FRS +L+ V+ +F G+ D + + Sbjct: 458 --LGESQKTRQRIDLSQNFRSRESVLSGVNYIFRKIMKKSLGGIDYDDQAALYPGMAFPE 515 Query: 304 QVGT-----VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 G +L ++ + + S + A+ A I + Sbjct: 516 AKGKNIADNTELLFLKGDGETTEPDNESL------------DSVELEAKLAAVRIRELTD 563 Query: 359 TDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + G R KDI++L+R + I Sbjct: 564 PEYGMDIYDGALGDYRKAGYKDIVILLRTVTGWA---EKFVDVLASENIPSTAEMSAGFF 620 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473 D L I+ ++ + + D+ +L SP+ S +++ + +H +++ Sbjct: 621 DTLEIRTMLQFLAIVDNPGQDIPLAAVLCSPIAGISSEEMA-LIRSKHSEGSLFGACMAC 679 Query: 474 ANCGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLD 530 + +K + + H++ + + H+ I + G E LD Sbjct: 680 SEETPGAAKLKKFLAMFHDIRRASVYLELHELIRYIYDRTGYYDYVQALPGGERRKANLD 739 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585 + SYSSL + + +EQ + VRIM++H +KGLE Sbjct: 740 LLRERAVAYAAGSYSSLFDFMRYIEQLKKNQIDFGEAVMPENDKGRVRIMSIHKSKGLEY 799 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P+V L G + I K+ + + K + + L T Sbjct: 800 PIVILAGLGKKFNFQDSISKLVMHAKSGIGLDAVNLQTRKKMTSAYKKFIAARLNLETLA 859 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKK---------------------SNQRTWYDM 684 E R+LYV MTRA ++LI+ + N K ++ R++ D Sbjct: 860 EEQRILYVAMTRAKEKLIMTGMESLKNTDKKLEIWQRNSGILGEVFPDWMLTSARSYLDW 919 Query: 685 VYDS--------------------------------FHNDERVKKIKLTNSINKDEWIAY 712 + + + +E +++ +++ + Sbjct: 920 IMPAVMNGEAENVVTFRMVDIRALAGREVGRVIDKKWQKEELLQRKHTLPDVSETDVSKR 979 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + + + + + ++ L +T+ Sbjct: 980 LFGEEAWQYPQKALLSVKGKYSVSELKKYAMEAIMEAAPAPGMALAEKQSETEEALPDFM 1039 Query: 773 LLSDNQ--------TFNRGLIIHKLLQVIFTL--PEHKRKNFITSYCTK--NAKLWPAKE 820 + RG H+ L++I P+ + + ++ S +A ++ Sbjct: 1040 KDKEADETHEVSNVGAFRGTAYHRALELIDFAGRPDERDEAWLRSQLNAMTSAGRLSGEQ 1099 Query: 821 YKNL-LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP------------KKDIIISGR 867 +++ + I ++ + + D E+ + ++ ++I G Sbjct: 1100 RQSIRIRDIADMVFSNLGLRMAEADRRHELYREAQFVMGVPVSALYPEVDSEETVLIQGI 1159 Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 ID + + +YKT H Q+ + + QL Y++ L+ K + LIY Sbjct: 1160 IDAYFEENGELILLDYKTDHVSKQDGADILKKRYKRQLDDYQQALEQML-QKKVRQKLIY 1218 >gi|288905008|ref|YP_003430230.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus gallolyticus UCN34] gi|288731734|emb|CBI13295.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus gallolyticus UCN34] Length = 1210 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 146/966 (15%), Positives = 316/966 (32%), Gaps = 135/966 (13%) Query: 64 ERFSLLSSFFLT---QKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRF 114 E+ S F T + + ++ P + K Q ++ Sbjct: 284 EQLREWSQHFETLYGRDGLGRLATDVAKLLPAGPAVTVAGTKYPVFKPLQGRLTGLKHLE 343 Query: 115 NTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +K +L L + + Y +AK + +F D+ +L++ A IR Sbjct: 344 TIFKYQPESLPLLELLQAFMQDFSEQYLQAKIQENTFEFSDITHFAIQILEEN---ADIR 400 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + + +++DE QD + Q ++ L S+ F VGD KQSIY F Sbjct: 401 ELYQNKYHEVMVDEYQDNNHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFR 449 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 A+P+ ++ + Q+ + +I L +FRS +++L + +F+ + Sbjct: 450 QADPQIFNQKFKDFQE----HPDRGKLILLKENFRSQSEVLDATNSIFTHLMDEAVGEIL 505 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 T + + Q E ++ + + + +A Sbjct: 506 YDDTHQLVAGSPAQK------ESHPENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVA 559 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDR 409 I + + + +DI +LV R Y I V Sbjct: 560 KEIIRLHNEEH---------VAFEDITLLVSSRT----RNDGILQTFEHYGIPLVTDGGE 606 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + + ++ R + + +D + V +++SP+F+F+ED++ ++ Q E + Sbjct: 607 QNYLKSVEVMVMLDTLRALDNPLNDYALVALMRSPMFSFNEDELARLALQTTEDDHRANL 666 Query: 470 IQKFANCGISK--------------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 QK + K + A++ + +D I + Sbjct: 667 YQKLEHALAGKGSHNELMTITLHVKLADFMACFAAWREFAKWHALYDLIWKIYNDRFYYD 726 Query: 516 QFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN----HN 570 + + L E+ + L I +++ + N Sbjct: 727 YVGNLPRAEQRQANLYALALRANNFERTGFKGLSRFIRMIDKVLESENDLADVEVALPKN 786 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIP 619 V +MT+H +KGLE VF+++ + + + + Sbjct: 787 AVNLMTIHKSKGLEFKYVFILNIDKKFSIQDLMSPLILSRQNGAGIKYLADMKEELETDV 846 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN------- 672 + + L+ +T E RL YV MTRA +L + +++ Sbjct: 847 FPTVKVIMDTLPYQLNKRELRLATLSEQMRLFYVAMTRAEKKLYLVGKASSEKLVDKYSG 906 Query: 673 ---------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS-------T 716 ++ N T+ D V + + + + ++ + Sbjct: 907 KSENNHLPVAERENFMTFQDWVLAIYEAYSKGTLPFAVDFVTDEDLTDDKIGKIEVTSVI 966 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------------- 762 + T + E I +D + +KL + IN P + PS + Sbjct: 967 TPDDLTDNRQSENITDALDRLEAVEKLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVD 1026 Query: 763 --------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814 + S + + G +H+L+Q I + + + +A+ Sbjct: 1027 VMTKAYQAQPTFELPDFSKKAKIEATAIGSAMHELMQRIPLSKQVTIDDITVALAQVSAE 1086 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRID 869 + + L ++ EN + + + Y E + + K+ ++ G +D Sbjct: 1087 --NEVKARIRLENVLAFFENSELGQLIQQHTDKIYREAPFAMLKEDPDSKEKFVVRGIVD 1144 Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 + I +F+YKT + + I + Q+++Y + L SY K++ L+ + Sbjct: 1145 GYLVLDDRIVLFDYKTDKY--KNSVEIKERYQGQMALYAEALSKSYDRKNVDKYLVLLGG 1202 Query: 930 PKVFII 935 ++ ++ Sbjct: 1203 EQLEVV 1208 >gi|261418926|ref|YP_003252608.1| recombination helicase AddA [Geobacillus sp. Y412MC61] gi|319765743|ref|YP_004131244.1| recombination helicase AddA [Geobacillus sp. Y412MC52] gi|261375383|gb|ACX78126.1| recombination helicase AddA [Geobacillus sp. Y412MC61] gi|317110609|gb|ADU93101.1| recombination helicase AddA [Geobacillus sp. Y412MC52] Length = 1242 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 150/1040 (14%), Positives = 328/1040 (31%), Gaps = 144/1040 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 I + I + + L+ E G P L++ L + + + Sbjct: 226 IAQHAAMELAAAKRLIRRALELAEEPGGPRPYAARLREDLERIAEL-EVHLSGTWDGLHH 284 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS- 122 L + + + + + ++ L+++ ++ +D + M + Sbjct: 285 ALKALSFGRLPACRGKDYDERLIDEAKSLRDQAKKKVEALRDNVFSLDPSVWLRHMREMK 344 Query: 123 --TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWIRYKID 174 L + ++ AK++ ++DF DL +L++RD + + Sbjct: 345 PIVETIANLVRRFAVMFQAAKREKGIVDFSDLEHYCLHILRRRDPETGESQPSSAALEYQ 404 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + + +L+DE QDT+L+Q +++ + K LF VGD KQSIY F AEP Sbjct: 405 AQFDEVLVDEYQDTNLVQEAILQLV-------KKGSERTGNLFMVGDVKQSIYRFRLAEP 457 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292 L + + G K I+L +FRS ++L + +F+ + D Sbjct: 458 MLFLDKYKRFTADGEEGGMK---IDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEA 514 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 +++ + + + +Q + + + +A + AR +A Sbjct: 515 AQLKYGADYPEG---------EDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKK 565 Query: 353 ISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I ++ + G+ R +DI++LVR + P + + I + Sbjct: 566 IKEIVSAPFYVYDRSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQA----QGIPAAADLS 621 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468 I +++L + I + D+ +L+SPLF+F E+++ I + Sbjct: 622 SGYFQATEISIMLSLLKVIDNPHQDIPLAAVLRSPLFHFDENELAMIRLADPKGTFYEAL 681 Query: 469 -------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520 K K ++ + +A+ S D + + + Sbjct: 682 CSFRQKPAETKEEANAQRKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALP 741 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575 G + L + + E S+ L + +E+ R + VRIM Sbjct: 742 GGRQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIM 801 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H++KGLE P+VFL + + L + + + Sbjct: 802 TIHSSKGLEFPIVFLAGLARSFHTRDLHHPYLLDKELGFAARFVHPRLRISYPTLPLLAI 861 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KS 676 + E R+LYV +TRA ++L + N + ++ ++ Sbjct: 862 QTKKRLELLAEEMRILYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRA 921 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL--- 733 + R++ D + + + T + + W L +E ++ Sbjct: 922 SARSYLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLRGQEAAREEMDG 981 Query: 734 ------------------MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK-------- 767 +E K + + + S + + Sbjct: 982 GVLLALEQGRPVPVGGGWQEEAKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADE 1041 Query: 768 ------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 +G +H +++ + + + K Sbjct: 1042 WRPRQGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPLDESSIRSQIVRLVEKE 1101 Query: 816 WPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKINCP----------KKDI 862 + E + +I + + + EV S + + + Sbjct: 1102 LLSAEQAEAVDPAAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESGRRV 1161 Query: 863 IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEHIPY----THIAQLSIYEKILKDSY 915 ++ G ID + + + +YKT H + E + Q+ +Y + ++ + Sbjct: 1162 LVQGVIDCVFADECGYVMIDYKTDEVVHRFAGQKEEAARFLLGRYGTQMRLYRRAIEQIW 1221 Query: 916 PNKSLVCLLIYVSEPKVFII 935 C L V + Sbjct: 1222 RAPVAECYLYSFDGGFVVAV 1241 >gi|319891943|ref|YP_004148818.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius HKU10-03] gi|317161639|gb|ADV05182.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius HKU10-03] Length = 1214 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 153/1013 (15%), Positives = 326/1013 (32%), Gaps = 145/1013 (14%) Query: 32 NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE--- 88 Y + P + + +Q + E+ + P K +E Sbjct: 233 EAYHQFELVGDFPKHIDFIEGHRQFLRRLLSEQFIDKTALATYQLGRIPPKPKAVKEDPM 292 Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRF----------NTYKMFKSTLASLTLAKYLNAHYE 138 ++ + K ++ ++ ++ F + TL + + + Sbjct: 293 LDAAYENFKAHYEQFKNNLNAVKSTFVGRDDETLLEELQHLAPRVKYLATLTEDVIHAFS 352 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 AK+ +LDF D +L+ + I + IL+DE QDT+ +Q +I Sbjct: 353 RAKRARNILDFSDYEHFALQILRDEQGEPSEIAALYRERFEEILVDEYQDTNRVQESIIG 412 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 S+ S LF VGD KQSIY F A+P + + + + Sbjct: 413 SIKR-------GDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFNQ---PDQSSGWR 462 Query: 258 IELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 I+L +FRS ++L+ + +F +A + D+ + + + VQ + Sbjct: 463 IDLSQNFRSRKEVLSTTNYLFDHMMDAEVGEIDYDAAAKLYYGAPYDEVDIPVQFNVLM- 521 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQA 373 D + +++ A IA + ++ T ++ G R Q Sbjct: 522 -----------------VDKDREMTASEQEAYFIAQQVQTILETQKVYDPKTGAYRPAQY 564 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 KDI++L R + LI + D I + N + + I+ +++ R I + Sbjct: 565 KDIVILERSYSNVRLIQQAFK----DQDIPLFVNSKQGYFEQTEIRLMLSFLRTIDNPLQ 620 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKY 487 D+ V +++S ++ F+ED++ KI + Y+ IQ + + + K + + Sbjct: 621 DIYLVGLMRSVIYQFTEDELAKIRIVSPQDNYFYQSIQHYMDDEAADPAIVAKLKPFLND 680 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSS 546 + +Q + + Q F + G L N + E +S+ Sbjct: 681 LARYQDYSQRHPVYQLIDKLFNDHYIIQYFSALVGGRGRRANLHGLFNKAVDFENSSFRG 740 Query: 547 LQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I ++Q K N N VR+MT+H++KGLE P V + Sbjct: 741 LFQFIRFIDQMIERGKDFGEENVIGPNDNVVRMMTIHSSKGLEFPFVIYSGLTRDFNKND 800 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 K + + + I + +K E RL+YV +TRA +Q Sbjct: 801 LGKPVVLNQHAGLGLQYYDEARGLFYPSLISMSIDLINQKELISEEMRLMYVALTRAKEQ 860 Query: 662 LIICKHSNTSN------------------------------------------EKKSNQR 679 L + S ++ ++ Sbjct: 861 LYLIGTSKKADALEMMAAATITDEKLAAIDRFNAKNPFQLIYSILSKHQNTNIQRHQRFE 920 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 + + + +++ I + + ++ +A + + ++ + Sbjct: 921 VDVETLDAAVKPRLQLQHIDAGDVLPTEQDLATYQGHAIEALEARLAATPLDDELAQRVM 980 Query: 740 PKKLF-SPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSD 776 + L+ P + + + + S + + Sbjct: 981 QQLLYVYPYQQAVQQVSKQSVSELKRQLDTEQADTNYERVRQYRLGVATYERPQFLQEQQ 1040 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLE 833 + G ++H ++Q + + Y + A + + + I R ++ Sbjct: 1041 HTAAEVGTLMHTVMQHLPFKEAGLTDQALNDYIESLVERSIIRAHDVNVIVIEEIKRFIQ 1100 Query: 834 NPMMTTAM-SCDSYSEVSVSG------KINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + + S + Y+E+ II G ID + + + +YKT Sbjct: 1101 SDLYDRIARSDEVYTELPFVVNQHQVEHTPDTTDASIIQGMIDLVFKENDHYYFLDYKTD 1160 Query: 887 HH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + + Q+ Y++ L+ + L + ++ Sbjct: 1161 ALIRRKGMSDEALERQLKEKYRVQMQYYQRALETIL-KCPVNGYLYFFKYGEL 1212 >gi|311110685|ref|ZP_07712082.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22] gi|311065839|gb|EFQ46179.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22] Length = 1204 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 159/936 (16%), Positives = 302/936 (32%), Gaps = 116/936 (12%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKK 143 Q+ DL ++LKK F + ++ + KS T+ L + + K++ Sbjct: 299 QDSQDLKLDLNDQLKKIFASFFVVEEKEQIAVLQKSEKIVKTIVAAEKKLIQKFSQLKRE 358 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 ++D+ D+ +L +A I + ++ N ILIDE QD + +Q +I+++ Sbjct: 359 QNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIKAI--- 415 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 TLF VGD KQSIY F A P L + K I L Sbjct: 416 ------KKKGQNTLFMVGDVKQSIYGFRQARPDLFLSKYHTYGKD-----NDSEKIILAD 464 Query: 263 SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRST + V+ +F+ N G+ ++ +S + + Sbjct: 465 NFRSTKRVTKTVNDLFNPILTTNFGGIDYKKEGQLQFGASY---------YPSDLPTASE 515 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377 ++ S ++ + + + I + + + + KR ++ DI Sbjct: 516 YIFTDKKQTQSAYEDQYGDEMDFSEVQMVIARIKQLKAENFQVWDRRTQLKRPLEYSDIA 575 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 ++ R R D + + D + +M R I + + D+ Sbjct: 576 IITRTRSD----NLQVMQEFAKADLPLFVTDAQNYFQTFELIMIMNYLRLIDNPQQDIPL 631 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIHIA 495 V +++SPLFNF E ++ +I + + K + +++ + L A Sbjct: 632 VAVMRSPLFNFKEPELAQIRVKTPAGNFYTALTSFASVNSSLGKKCKEILQQLETLRSFA 691 Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + I + G + L+ E + L + IS + Sbjct: 692 ATHRISELIWSIYEKTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFI 751 Query: 555 EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 E+ N V++MT+H +KGLE P+VF++ G Q + I Sbjct: 752 ERMRKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPIVFVMGLGHQYQTRDLSGNFTI- 810 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 ++ G+ I + + + S ++ EE R+LYVG+TRA +LI+ N Sbjct: 811 --SQNELGLTIKEKNYRIDSLVKSLADVQKRQQMLEEEARILYVGLTRAQQKLILVASVN 868 Query: 670 TSNEKKSNQRTWYDM-----------------------VYDSFHNDERVKKIKLTNSINK 706 K+ + D + D+ ++ + Sbjct: 869 EIENKRKKWVSELDQKKDIIPLVKKINAQSPLDFLGPKLEQKHEFDQTIRDMTSALEEQD 928 Query: 707 DEWIAYEWSTHHPENT--------------------------PLEREETIKQLMDEQKIP 740 + PE P E +I Sbjct: 929 KLYYLKFNLDLEPEKIKDQNEDSQEVNSNVNKVVKELYNFKYPFEDATKTTAYQSVSEIK 988 Query: 741 KKLFSPIKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798 K PI ++ +++ S + +T G +H +LQ Sbjct: 989 KAFNDPIDTELENSRLISSSNRYLQPIDETPTFLEGQKFTGAEIGTAMHLVLQYYNYEGN 1048 Query: 799 HKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS-- 852 ++N + +L + E S Sbjct: 1049 KDQENLDQEIDQLVELGKLNSLMVPHLSKEALNWFVMSDFAKEFWKQPDKLHRESQFSSL 1108 Query: 853 -------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHI 901 + P +++ G +D ++ + +F+YKT E I + Sbjct: 1109 VNASELFNDFSDPSAKVLVHGTVDGYFEAKDGLILFDYKTDFVDKTNEEQAIEKIKQKYT 1168 Query: 902 AQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIP 936 QL +YE+ L + +K + LI + KV + Sbjct: 1169 GQLRLYEQALNEMNNDKKVIGKYLILLDARKVVPVD 1204 >gi|172056768|ref|YP_001813228.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15] gi|251764524|sp|B1YKM8|ADDA_EXIS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|171989289|gb|ACB60211.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15] Length = 1183 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 164/1014 (16%), Positives = 350/1014 (34%), Gaps = 119/1014 (11%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ----ASQTQCI 62 + +ES + + IN+Y+ LS + A L Q + Sbjct: 203 IDPDESSL-LTRLFELEWERVGPVINRYMELSYRLRQSGYDEMADLLVQDVTPVRRINPE 261 Query: 63 EERFSLLSSFF----LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 ++R++ ++ F + + + ++ + L LKK +D F++ Sbjct: 262 QDRWTTVALAFQAVEFGRWKGIRGDEEMKKFQTERTRLVSDLKKMRDLFVEKDGVDYLED 321 Query: 119 MFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + +TL + +A Y EAK++ ++DF DL +L++ + + + Sbjct: 322 LRSQLGHVEMIVTLVRSFSAAYLEAKQQRGIVDFSDLEHFALAILEENGEPTDVARLLQE 381 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 +L+DE QDT+ +Q ++R +++ + + LF VGD KQSIY F AEP Sbjct: 382 RFIEVLVDEYQDTNEVQERILRLVSK-------SDEATGNLFMVGDVKQSIYKFRHAEPG 434 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 L + + Q+ + + I+L +FRS ++L + +F + D Sbjct: 435 LFLNKFKRFQQ-----TEVGTRIDLTKNFRSRLEVLDGTNHIFRQVMDEAVGEIDYDEAA 489 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 R +G V + Q+ +++ + N + + A+ IA I Sbjct: 490 YLRLGNLGYVDSTQVDPELLLVDQTDTNKE-----------------ELEAQVIATRIIE 532 Query: 356 MIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + + R + +DI++LVR R + Y++ V + Sbjct: 533 MVNDENPYLVFDAKQKRFRKCEYRDIVILVRSRG---KRVQALVDVFEQYELPVYADTTG 589 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 I+ +M+L + I + D+ F +L+SP+F ++ D+ +I + + I Sbjct: 590 GYFQATEIQIMMSLLKTIDNPLQDIPFASVLRSPIFGLTDRDLGRIRAKSKDGSFYEAAI 649 Query: 471 QKFANCGISKFQ--HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVID 527 + + +H A+ S + + G Sbjct: 650 LVAKEQTPLGLRVDEALNQLHHWRTEARGKSLASLIRSLFDQTGYFEYVGCLNGGRSRQA 709 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKG 582 L+ + E + Y L + + + R+ + + VRIMT+H +KG Sbjct: 710 NLNALYERAHQYEASGYRGLYRFLRLIHRLVERGEDFSEARSLGEDEDVVRIMTIHQSKG 769 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PV + G Q I+ + + + + + +S + + + + + Sbjct: 770 LEFPVTIVSQLGKQFNKQDQIQAIQLHKTYGIALDAIDPVKRLRSGTLLKEVIRREMDRE 829 Query: 643 TQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E R+LYV MTRA ++LI+ D + D Sbjct: 830 MKAEEMRVLYVAMTRAKEKLILVGAIKGLEDQLIKWQDQPLDELLLPEMDRRNAKTYADW 889 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK--------------- 738 V + +++D E P + + + ++ + Sbjct: 890 VVPAVLRNFLLSEDGPRWSFRIIALDEIAPYQELTKMVEQLEHVRVLEKIDHAGDETLNI 949 Query: 739 -IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN------------------QT 779 I + + + K LE ++ Sbjct: 950 QIEAAFAYQYPYQVATDTAAKQTVTELKRTEQLERAAFESTHRQSTYYRTPQFLGPTLTG 1009 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM-- 837 RG ++H +Q+ + + + + A+ + + +T L + Sbjct: 1010 AERGTVLHLAMQLYESGRSFEEQILDWEQAER-ISSLEAQTMREAIPELTTFLASDTGQL 1068 Query: 838 --TTAMSCDSYSEVSVSGKIN---------CPKKDIIISGRIDQISISQQNIFIFEYKTH 886 ++ + Y E+ + KI+ P ++ G +D + + +YK+ Sbjct: 1069 FEQRLLAGEVYRELPFTYKIDSARFRSDWHGPSDQAVMQGIVDCLIRDGDTYILLDYKSD 1128 Query: 887 HHVP-----QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + E + + QL++Y++ L+ + L+ + +V I Sbjct: 1129 QVFETTDNQNQAEVLRTRYATQLNLYQEALEAILHIRISRKLIYAFALHEVIEI 1182 >gi|322385777|ref|ZP_08059421.1| exonuclease RexA [Streptococcus cristatus ATCC 51100] gi|321270515|gb|EFX53431.1| exonuclease RexA [Streptococcus cristatus ATCC 51100] Length = 1223 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 158/991 (15%), Positives = 324/991 (32%), Gaps = 129/991 (13%) Query: 29 SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88 + ++ L+ +TG+ +L Q + ++T + + + + K I Q Sbjct: 275 AALDILAELTEQTGSEQLLDLIQRFLELAKTSNHQAF-----TARVGKNADELKKEIAQA 329 Query: 89 INKKSPDLKEKLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 N+ L E++K+ + + + + + Y E K Sbjct: 330 YNEARKPLIERIKELDVRLYHLNFMEQHQSEALPLLDLLRDFVRDFSQAYLERKVAENAF 389 Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 +F D+ ++L+ +R + + +++DE QDT+ Q ++ L + Sbjct: 390 EFGDISHFAIEILENYPE---VRRFYQDKYHEVMVDEYQDTNHTQERMLELLARE----- 441 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 F VGD KQSIY F +P+ + ++ Q + +I L +FRS Sbjct: 442 ------NNRFMVGDIKQSIYRFRQVDPQIFNDKFKLYQAD----PSQGKLIILKENFRSH 491 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 ++L + VF + + D T + + + +D + ++E Sbjct: 492 IEVLEATNDVFKRLMDEEIGEIDYNETHYLVAGNPAKREPNPANQAEFLLYDGSADSEEE 551 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 S+ A + I + + + KDI +L R Sbjct: 552 DSDQGLPSISAGEVA-----LVIKEIIRLHNQE---------GVDFKDITLLTASRT--- 594 Query: 388 LITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 L + + I +V +D + + ++ R I + +D + +LKSP+F Sbjct: 595 -RNDLILAEFDRHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLNDYALTALLKSPMF 653 Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFAN--------------CGISKFQHVIKYIHELI 492 +F ED++ ++ Q T+++ +K N K QH + +++ Sbjct: 654 DFDEDELARLALQASSTKSMENLYEKLRNALADQGLGPQLIHGELRKKLQHFQETLNDWR 713 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551 ++ S +D I + + G + L E++S+ L I Sbjct: 714 SYSKTHSLYDLIWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFI 773 Query: 552 SELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 S +++ +A N V+++T+H +KGLE VFL++ + Sbjct: 774 SMIDRILKNEHDLASVPLAAPKNAVQLVTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAII 833 Query: 608 IMPSLNDD------------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + LK ++ E RLLYV M Sbjct: 834 LSRQKGIGIKYVADVDLEAQGPHAPKQIRISMETLPYQQNAEELKLASLSEQMRLLYVAM 893 Query: 656 TRASDQLIICKHSNTS-------------------NEKKSNQRTWYDMVYDSFHNDERVK 696 TRA +L + + + +N + W + F + Sbjct: 894 TRAETKLYLVGKGKQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFGKENLAY 953 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTP----LEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + + P + E I++ +D + +L S + I Sbjct: 954 QTRFVTDQELTDEQIGLVEQVDPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIE 1013 Query: 753 EPYILNPSTIDTKGKT------------------------NLESLLSDNQTFNRGLIIHK 788 P + PS I + G +H+ Sbjct: 1014 LPSVRTPSQIKKFYEPVMDSEGLDIMDAPRSHQTQLTFDLPDFGKKKQVTGAQIGSAVHE 1073 Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA--MSCDSY 846 L+Q I + + + KE L I + S + Sbjct: 1074 LMQRIPLDRPITKTSIRQALAQVQVDAAVKKEID--LAKIEAFFATELGQLIQHQSNHLH 1131 Query: 847 SEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904 E + + +D ++ G +D + +I +F+YKT + + + + AQL Sbjct: 1132 REAPFAMLKQDPASGQDFVVRGILDGYLLFDDHIVLFDYKTDRY--HDPAELVERYRAQL 1189 Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +Y + L SY + LI + ++ ++ Sbjct: 1190 DLYAEALSRSYGLSQVDKYLILLGGTELQVV 1220 >gi|94994076|ref|YP_602174.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750] gi|251764562|sp|Q1J7E4|ADDA_STRPF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94547584|gb|ABF37630.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750] Length = 1222 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 162/1021 (15%), Positives = 325/1021 (31%), Gaps = 131/1021 (12%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERF------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 F + L K P K +K + Sbjct: 304 RDFKCLYGKAGLDRLIRDVTGLIPSGNYVTVSKVKYPVFKTLHQKLKQFRHLETILMYQK 363 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 F + Y K + +F D+ +L++ IR Q Sbjct: 364 DCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSYQQHY 420 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+P+ Sbjct: 421 HEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIF 469 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 ++ R QK+ +I L +FRS +++L V + VFS + D +H Sbjct: 470 NQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLYDEQH 523 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + TV ++ + ++ + DS S + +A I + Sbjct: 524 QLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEIIKLH 578 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHL 416 + + +DI +LV R + N Y I +V + + Sbjct: 579 ND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNYLKSV 625 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQK- 472 + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ IQ+ Sbjct: 626 EVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDKIQRA 685 Query: 473 ----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-F 521 + + K +K + A+ S +D I + S+ Sbjct: 686 VIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVASQAK 745 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTV 577 + L + E++ Y L I LE +A V +MT+ Sbjct: 746 AEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVNLMTI 805 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSK 626 H +KGL+ P VF+++ + K + + + Sbjct: 806 HKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNSVKVS 865 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR------- 679 + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 866 METLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKLDKLL 925 Query: 680 ------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HPENTP 723 W + D F ++ ++ + + T + Sbjct: 926 PLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPDDLKD 985 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT--------------- 768 + ETI + +D + +L + + I+ P + PS + + Sbjct: 986 NRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIEKSSR 1045 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S + + + G +H+L+QV+ ++ + + + + Sbjct: 1046 SLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNEEVKT 1103 Query: 822 KNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 L I + + Y E + +++ ++ G ID + Sbjct: 1104 ALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYFLFDD 1163 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP--KVFI 934 +I + +YKT + ++ + + QL +Y + L +Y L+ + ++ Sbjct: 1164 HIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKPEIVE 1221 Query: 935 I 935 + Sbjct: 1222 V 1222 >gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z] gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z] Length = 1057 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 162/951 (17%), Positives = 299/951 (31%), Gaps = 115/951 (12%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70 + Y+D + + + +L+ E E ++ Sbjct: 201 DEEITAYRDDLAGDELVNALMAELRALAPERKGELFQAGPAAFAAFCDANGPAEMYAA-G 259 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 K + + ++ + +E K+ + R F+ A +A Sbjct: 260 KLLAGINTNAYKAPLPKGGLERFKEKREVFKEFPTHPDESDPRTRL--TFEILAALGRVA 317 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 ++ K++ VLDF+DLI T DL++ ++ ++ +IL+DEVQD Sbjct: 318 SAVSERTVREKQQRGVLDFDDLIQKTRDLIEND----AVQKTLNARYRYILVDEVQDNDP 373 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 + ++IR L D LF VGD KQSIY F GA+ + + Sbjct: 374 VLTDIIRILCGD-------PKENNRLFIVGDAKQSIYLFRGADVSGFNAFQTVFAND--- 423 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +EL SFR+ +I+ +V+ VFS A R G G+V L Sbjct: 424 ------PVELDTSFRTVPEIIRLVNHVFSSVF-ADPKEIWEAGYGELTPHRAGHSGSVTL 476 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI---FSNGK 367 + ++ S AR +A I + + + +G Sbjct: 477 IRLPTGETKAE-------------------SMRREARTLASWIFDTVSRKKLSVYDKDGT 517 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R + DI VL+ R R Y + + + D L + Sbjct: 518 CRPARFGDIAVLIEARTHM----DKLRHALESYGVPYTEEKGYSFYQKQEVFDFTNLLKA 573 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 I+ E+D+ +LKSP F S+ ++ + ++ SK + Sbjct: 574 IVYPEEDIPLYGVLKSPYFGISDAELCRAAAGSGRPL-IWRLRNYATANPDSKIGKAVGD 632 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSS 546 + F + ++ + FG E L++ + N S Sbjct: 633 LARWHAEIGTEPFVPFLSRLIAESGIAAVYGGLPFGREATANLEKLVAIARSRSMNRPFS 692 Query: 547 LQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + E + L+ + V+I+TVH +KGLE P++ L G+ Sbjct: 693 VYEYLGILDTCMEEEFDEREGMVPSEEDDRVKILTVHASKGLEYPILALCFAGTG---DG 749 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + + + + + ++ L +K E RL YV MTRA D Sbjct: 750 LKVSAPVFDAELGVGIPVRLAGEGEGLSFVIECLKPEMKAKLLAERKRLFYVAMTRARDH 809 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L+I + ++ + YD + + + Sbjct: 810 LVISGTDGKKGPETNSFLSMYDAGISGCPYLPELITDCVAEPGDLCRIRPKVPDGWTDTP 869 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781 P + EE + L PS + Sbjct: 870 LPTKEEEAAQSLTA-----------------AVRNRTPSAAEEA-------------AML 899 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841 RG +H++ + KR P + L +P+M Sbjct: 900 RGTALHEVFEGKPADAAVKR------------YGLPPAAAEEFAAKYAAFLASPLMQN-- 945 Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTH 900 + S E V+ + ++G ID++ + I +YKT E+E + Sbjct: 946 AAKSICEQEVAFSF----EGTPLNGVIDRLVQYEDGSWMIIDYKTGRPSKMELE----RY 997 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951 +QL++Y + K L + +V ++ +A ++ K+ Sbjct: 998 ESQLAVY-FLWAKRLFGKDPEVCLYLSDKNEVVSFTMDE-ERAMGLVAEKM 1046 >gi|326790761|ref|YP_004308582.1| recombination helicase AddA [Clostridium lentocellum DSM 5427] gi|326541525|gb|ADZ83384.1| recombination helicase AddA [Clostridium lentocellum DSM 5427] Length = 1251 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 150/952 (15%), Positives = 304/952 (31%), Gaps = 129/952 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + ++ + L+ ++ + L + Y+ K+ V Sbjct: 306 KAYRDLGKEVIKGLQDDLAFIEDPLLMAQLPRLGDLMATLVKLIETFEERYQLEKQNAGV 365 Query: 147 LDFEDLIINTNDLLKKRDVSA----------WIRYKIDQEINHILIDEVQDTSLIQWEVI 196 +D+ DL LL + + + ++ I IDE QD++ +Q ++ Sbjct: 366 VDYNDLEHFCLQLLVEPIFNEAGELVEVSYTDVAKELSSFYKEIYIDEYQDSNTVQETLL 425 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 +++ + T F VGD KQSIY F A P + +K + K + Sbjct: 426 KAVA------EANKEEGPTRFMVGDMKQSIYRFRLANPLIFAEKYGSWEKHQVTSSTKGN 479 Query: 257 --IIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I+L +FRS +IL V+ +F + + L D ++ + Sbjct: 480 NVCIDLSQNFRSRDNILQGVNDLFQQVMSVRVGELEYDEYAELKVGNHYEEGNPESLAEG 539 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN------G 366 + + +E + L + A +A + ++ + ++ G Sbjct: 540 ALSEAIEVHILETKEPENTEETGLEDLKNVECEAMLVANLVDQLLKGEGNPTHIFDKALG 599 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 R ++AKDI++L+R K+ I I + D L I+ +M+L + Sbjct: 600 AYRKVEAKDIVILLRATKEKAGI---FENALMQKGIGAYADIGGNFFDALEIQTMMSLLK 656 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF-ANCGISKFQHVI 485 I + D+ + +L+SP+ S D++ I ++ + Sbjct: 657 IIDNPLQDIPLITVLRSPIVGVSLDELVYIRKAAETGCFYEALLKYLKTCQDNPLLNRFM 716 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSY 544 ++ +++ S + + + G + L+ F + E N Sbjct: 717 SMLNNYRNMSSELSLEELLARLYVETGYYRYVAMLPTGAKKKANLELFKKYAEAYENNQN 776 Query: 545 SSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L I L+Q T N N V+IM++H +KGLE VVFL DTG + + Sbjct: 777 GKLFGFIQYLDQLAQTPDGLAEAKLVGENENLVQIMSIHKSKGLEFSVVFLCDTGKRFNN 836 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + +K + + L P K + + E R+LYV +TRA Sbjct: 837 NDMMKPVLLHNELGLAPDYLDTSKYVKYPTIPKMAIKNQILSENISEEMRVLYVALTRAK 896 Query: 660 DQLIICKHSNT----------------------SNEKKSNQRTWYDMVYDSFHNDERVKK 697 ++L + + ++ + W + + + E ++ Sbjct: 897 EKLFVTGTLSDVQDAAYKWSLYASREETAILPLGVKRGGSYLNWIGLSLYAHSDLEDLRL 956 Query: 698 IKLTNS----INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL---------- 743 + + +W WS N RE+ I++ D + Sbjct: 957 LTHEAPPYLFEGRGKWQLRVWSKEELGNLQTSREQGIEEKRDLLEEWDTEKIYGPYKEII 1016 Query: 744 ------FSPIKNDINEPYILNPSTI----------------------DTKGKTNLESLLS 775 + + P ++ S I + + Sbjct: 1017 FNRLNGEYTHEEAVLLPTKVSVSEIKRDAMGQLIDDEVYEVNLYPVEEEVPVPSFIKGQE 1076 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 + + RG +IH + + + L + L + ++ + Sbjct: 1077 ELKGAKRGTLIHSVFEHLDFLKFIEVAAIEEELMHLVNSH-------QLSAEVLEVVSSK 1129 Query: 836 MMTTAMSCDS----YSEVSVSG--------------KINCPKKDIIISGRIDQISISQQN 877 + + + V + ++I+I G ID I ++ Sbjct: 1130 RLAEMANSEVVKKMRRAQYVEKEKAFIYLANAKLVNEAYPEGEEILIQGVIDSFYIDEEG 1189 Query: 878 IFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 I + +YKT + ++ E I +I QL +Y L D + Sbjct: 1190 ITLIDYKTDYVDKEQKELSIQRIKEKYIKQLELYSLALSDITKLTVAHKYIY 1241 >gi|325977976|ref|YP_004287692.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177904|emb|CBZ47948.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1168 Score = 346 bits (886), Expect = 2e-92, Method: Composition-based stats. Identities = 150/1001 (14%), Positives = 326/1001 (32%), Gaps = 137/1001 (13%) Query: 26 FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85 V+D+ Y + G PT + L + + F L + + Sbjct: 212 QDVTDLEDYKQKT-AKGTPTA-NYKKHLNIIEHLREWTQHFETLYG----RDGLGRLATD 265 Query: 86 TQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNA 135 ++ P + K Q ++ +K +L L + + Sbjct: 266 VAKLLPAGPAVTVAGTKYPVFKTLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSE 325 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y +AK + +F D+ +L++ A IR + + +++DE QD + Q + Sbjct: 326 QYLQAKIQENAFEFSDIAHFAIQILEEN---ADIRELYQNKYHEVMVDEYQDNNHTQERM 382 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 + L S+ F VGD KQSIY F A+P+ ++ + Q+ + Sbjct: 383 LELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE----HPDRG 427 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 +I L +FRS +++L + +F+ + T + + G + Sbjct: 428 KLILLKENFRSQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVA---GSPAQKESHP--E 482 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 ++ ++ + + + +A I + + + +D Sbjct: 483 NKTQVLIYDIVDNNSDLPSDAEEGQINPNEVKLVAKEIIRLHNEEH---------VTFED 533 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDD 434 I +LV R Y I V + + ++ R + + +D Sbjct: 534 ITLLVSSRTR----NDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLND 589 Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--------------ISK 480 + V +++SP+F+F+ED++ ++ Q E + QK + K Sbjct: 590 YALVALMRSPMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELMTITLHDK 649 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539 + A++ + +D I + + + L Sbjct: 650 LADFMTCFAAWREFAKWHALYDLIWKIYNDRFYYDYVGNLPRAEQRQANLYALALRANNF 709 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGS 595 E+ + L I +++ + N V +MT+H +KGLE VF+++ Sbjct: 710 ERTGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLEFKYVFILNIDK 769 Query: 596 QVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 + + + + + + L+ +T Sbjct: 770 KFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVSMDTLPYQLNKRELRLATL 829 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDS 688 E RL YV MTRA +L + +++ ++ N T+ D V Sbjct: 830 SEQMRLFYVAMTRAEKKLYLVGKASSEKLVDKYSGKSENNHLPVAERENFMTFQDWVLAI 889 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWS-------THHPENTPLEREETIKQLMDEQKIPK 741 + + + + ++ + + T + E I +D + + Sbjct: 890 YEAYSKDTLPFAVDFVTDEDLTDDKIGKIEVTSVITPDDLTDNRQSENITDALDRLEAVE 949 Query: 742 KLFSPIKNDINEPYILNPSTI----------------------DTKGKTNLESLLSDNQT 779 KL + IN P + PS + + S + + Sbjct: 950 KLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFELPDFSKKAKIEA 1009 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839 G +H+L+Q I + + + +A+ + + L ++ EN + Sbjct: 1010 TAIGSAMHELMQRIPLSKQVTIADITAALAQVSAE--DEVKARIRLENVLAFFENSELGQ 1067 Query: 840 AMSCD---SYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894 + Y E + + K+ ++ G +D + I +F+YKT + + Sbjct: 1068 LIQQHTDKVYREAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKY--KNSV 1125 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I + Q+++Y + L SY K + L+ + ++ ++ Sbjct: 1126 EIKERYQGQMALYAEALSKSYDRKDVDKYLVLLGGEQLEVV 1166 >gi|330832698|ref|YP_004401523.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3] gi|329306921|gb|AEB81337.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3] Length = 1217 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 160/984 (16%), Positives = 320/984 (32%), Gaps = 129/984 (13%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----- 94 + + L + ++ + L + K + K Sbjct: 270 AKYFANVEEVLDLLTG-LDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPKDEHLIAFK 328 Query: 95 --------DLKEKLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145 + L+ E ++ + + + + Y + K K Sbjct: 329 EEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEA 388 Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 +F D+ +L++ IR ++ + +++DE QD + Q ++ L Sbjct: 389 AFEFGDIGHFAIRILEEN---VDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL------ 439 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 S+ F VGD KQSIY F A+P + + Q Q +I L +FR Sbjct: 440 -----SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQAD----SQAGKLILLKENFR 490 Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 S ++L + +F+ + Q T + GQ E +D Q Sbjct: 491 SQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQ---- 546 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385 +S S D+ + + +A I + + KDI +LV+KR Sbjct: 547 -DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRTH 596 Query: 386 TPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 L + + I +V + L + ++ R I + +D + V +LKSP Sbjct: 597 ----NDLIISIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKSP 652 Query: 445 LFNFSEDDIFKICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHI 494 +F F ED++ +I Q ++ + + K + + + Sbjct: 653 MFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAF 712 Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553 A+ S +D I K + G++ L + E+ Y L I Sbjct: 713 AKMHSIYDLIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIVM 772 Query: 554 LEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF----------S 599 +++ K N V++MT+H +KGLE VFL++ + S Sbjct: 773 IDRALANDKDLADVEEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIIS 832 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K+ + + + D P+ + D ++ LK + E RLLYV +TRA Sbjct: 833 RKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQDNLQELKIANLSEQMRLLYVALTRAE 892 Query: 660 DQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +L + N + + T+ D + Sbjct: 893 KKLYLVGKGNADKLAKKYDGKKADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVF 952 Query: 704 INKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 + ++ + + + E I Q +D+ ++L K I P + Sbjct: 953 VTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSL 1012 Query: 757 LNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIFT 795 PS I + S G +H+L+Q + Sbjct: 1013 RTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDL 1072 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS- 852 + +A+ + + I + + ++ + E + Sbjct: 1073 SWLVTEDTVREALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFAS 1130 Query: 853 -GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911 + +++ ++ G ID + +I +F+YKT + + + + AQ+ +Y + L Sbjct: 1131 LQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPSQLSQRYQAQMQLYAEAL 1188 Query: 912 KDSYPNKSLVCLLIYVSEPKVFII 935 K +Y + C LI + ++ ++ Sbjct: 1189 KKAYKIDRVDCHLILLGGERIEVV 1212 >gi|71910408|ref|YP_281958.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005] gi|71853190|gb|AAZ51213.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005] Length = 1222 Score = 345 bits (884), Expect = 3e-92, Method: Composition-based stats. Identities = 160/1025 (15%), Positives = 326/1025 (31%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFSLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE + V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|19745861|ref|NP_606997.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes MGAS8232] gi|81632923|sp|Q8P1J2|ADDA_STRP8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|19748011|gb|AAL97496.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes MGAS8232] Length = 1222 Score = 345 bits (884), Expect = 3e-92, Method: Composition-based stats. Identities = 161/1025 (15%), Positives = 327/1025 (31%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D+ Sbjct: 466 PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDALY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S + Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLSLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKVTYEPLLEPIGVDIIE 1041 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|94988280|ref|YP_596381.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429] gi|251764560|sp|Q1JMH5|ADDA_STRPC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94541788|gb|ABF31837.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429] Length = 1222 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 163/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYCFIKMIDKVLETQNDLADVEVAAPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S + Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADVFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777 + + ETI + +D + +L + + I+ P + PS + + LE + D Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 1041 Query: 778 --------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--REIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|297531123|ref|YP_003672398.1| recombination helicase AddA [Geobacillus sp. C56-T3] gi|297254375|gb|ADI27821.1| recombination helicase AddA [Geobacillus sp. C56-T3] Length = 1242 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 155/1040 (14%), Positives = 332/1040 (31%), Gaps = 144/1040 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 I + I + + L+ E G P L+ + E Sbjct: 226 IAQHAVMELTAAKRLIRRALELAEEPGGPRPYAERLREDRDMIADLETRL-SGPWAELHR 284 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS- 122 L + + + + + ++ L+++ ++ +D + M + Sbjct: 285 ALKALSFGRLPACRGKDYDERLIDEAKSLRDQAKKKVEALRDNVFSLDPSVWLRHMREMK 344 Query: 123 --TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWIRYKID 174 L + ++ AK++ ++DF DL +L++RD + + Sbjct: 345 PIVETIANLVRRFAVMFQAAKREKGIVDFSDLEHYCLHILRRRDPETSEWQPSPAALEYQ 404 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + + +L+DE QDT+L+Q +++ + K LF VGD KQSIY F AEP Sbjct: 405 AQFDEVLVDEYQDTNLVQEAILQLV-------KKGSERTGNLFMVGDVKQSIYRFRLAEP 457 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292 L + + G K I+L +FRS ++L + +F+ + D Sbjct: 458 MLFLDKYKRFTADGEEGGMK---IDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEA 514 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 +++ + + + +Q + + + +A + AR +A Sbjct: 515 AQLKYGADYPEG---------EDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKK 565 Query: 353 ISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I ++ + G+ R +DI++LVR + P + + I + Sbjct: 566 IKEIVSAPFYVYDRSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQA----QGIPAAADLS 621 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468 I +++L + I + D+ +L+SPLF F E+++ I + Sbjct: 622 SGYFQATEISIMLSLLKVIDNPHQDIPLAAVLRSPLFRFDENELAMIRLADPKGTFYEAL 681 Query: 469 -------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520 K K ++ + +A+ S D + + + Sbjct: 682 CSFRQKPAETKEEANAQRKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALP 741 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575 G + L + + E S+ L + +E+ R + VRIM Sbjct: 742 GGRQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIM 801 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H++KGLE P+VFL + + L + + + Sbjct: 802 TIHSSKGLEFPIVFLAGLARPFHTRDLHHPYLLDKELGFATRFVHPRLRISYPTLPLLAI 861 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KS 676 + E R+LYV +TRA ++L + N + ++ ++ Sbjct: 862 QTKKRLELLAEEMRILYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRA 921 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD- 735 + R++ D + + + T + + W L EE ++ MD Sbjct: 922 SARSYLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLRGEEAAREEMDD 981 Query: 736 ------------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 ++++ ++L + S + K + L +D Sbjct: 982 GVLLALEQGRPVPVGGGWQKEVKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADE 1041 Query: 778 ----------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 +G +H +++ + + + K Sbjct: 1042 WRPRQGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPLDESSIRSQIVRLVEKE 1101 Query: 816 WPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKINCP----------KKDI 862 + E + +I + + + EV S + + + Sbjct: 1102 LLSAEQAEAVDPAAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESGRRV 1161 Query: 863 IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEHIPY----THIAQLSIYEKILKDSY 915 ++ G ID + + + +YKT H + E + Q+ +Y + ++ + Sbjct: 1162 LVQGVIDCVFADECGYVMIDYKTDEVVHRFAGQKEEAARFLLGRYGTQMRLYRRAIEQIW 1221 Query: 916 PNKSLVCLLIYVSEPKVFII 935 C L V + Sbjct: 1222 RAPVAECYLYSFDGGFVVAV 1241 >gi|251764599|sp|Q1JCJ8|ADDA_STRPB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA Length = 1222 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 163/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYCFIKMIDKVLETQNDLADVEVAAPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKVLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S + Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADVFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777 + + ETI + +D + +L + + I+ P + PS + + LE + D Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 1041 Query: 778 --------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--REIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|223932475|ref|ZP_03624477.1| recombination helicase AddA [Streptococcus suis 89/1591] gi|302023673|ref|ZP_07248884.1| ATP-dependent exonuclease subunit A [Streptococcus suis 05HAS68] gi|223898929|gb|EEF65288.1| recombination helicase AddA [Streptococcus suis 89/1591] Length = 1217 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 160/984 (16%), Positives = 320/984 (32%), Gaps = 129/984 (13%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----- 94 + + L + ++ + L + K + K Sbjct: 270 AKYFANVEEVLDLLTG-LDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPKDEHLIAFK 328 Query: 95 --------DLKEKLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145 + L+ E ++ + + + + Y + K K Sbjct: 329 EEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEA 388 Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 +F D+ +L++ IR ++ + +++DE QD + Q ++ L Sbjct: 389 AFEFGDIGHFAIRILEEN---VDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL------ 439 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 S+ F VGD KQSIY F A+P + + Q Q +I L +FR Sbjct: 440 -----SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQAD----SQAGKLILLKENFR 490 Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 S ++L + +F+ + Q T + GQ E +D Q Sbjct: 491 SQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQ---- 546 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385 +S S D+ + + +A I + + KDI +LV+KR Sbjct: 547 -DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRTH 596 Query: 386 TPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 L + + I +V + L + ++ R I + +D + V +LKSP Sbjct: 597 ----NDLIISIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKSP 652 Query: 445 LFNFSEDDIFKICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHI 494 +F F ED++ +I Q ++ + + K + + + Sbjct: 653 MFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAF 712 Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553 A+ S +D I K + G++ L + E+ Y L I Sbjct: 713 AKMHSIYDLIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIVM 772 Query: 554 LEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF----------S 599 +++ K N V++MT+H +KGLE VFL++ + S Sbjct: 773 IDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIIS 832 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K+ + + + D P+ + D ++ LK + E RLLYV +TRA Sbjct: 833 RKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQDNLQELKIANLSEQMRLLYVALTRAE 892 Query: 660 DQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +L + N + + T+ D + Sbjct: 893 KKLYLVGKGNADKLAKKYDGKKADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVF 952 Query: 704 INKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 + ++ + + + E I Q +D+ ++L K I P + Sbjct: 953 VTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSL 1012 Query: 757 LNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIFT 795 PS I + S G +H+L+Q + Sbjct: 1013 RTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDL 1072 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS- 852 + +A+ + + I + + ++ + E + Sbjct: 1073 SWLVTEDTVREALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFAS 1130 Query: 853 -GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911 + +++ ++ G ID + +I +F+YKT + + + + AQ+ +Y + L Sbjct: 1131 LQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPSQLSQRYQAQMQLYAEAL 1188 Query: 912 KDSYPNKSLVCLLIYVSEPKVFII 935 K +Y + C LI + ++ ++ Sbjct: 1189 KKAYKIDRVDCHLILLGGERIEVV 1212 >gi|317132410|ref|YP_004091724.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3] gi|315470389|gb|ADU26993.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3] Length = 1186 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 147/976 (15%), Positives = 318/976 (32%), Gaps = 109/976 (11%) Query: 35 VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP 94 + + ++L + + + + + + + +K + + + Sbjct: 245 LEKAYGGAFASLLAQVERACSLANAKDWDGVTVAVQGMVYDRLGAARK-MDDPALRDRLK 303 Query: 95 DLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 +++ +K+ D+ R + ++ + + K L++ + K + +L Sbjct: 304 GVRDTVKEQMDKLCAGVLCCTEAEYRVDVERLRPLAESLFGVVKELDSRFYAKKAEKGIL 363 Query: 148 DFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 DF DL LL+ K Y + + +L+DE QD + Q + R+++ + Sbjct: 364 DFGDLERLALRLLRGKDGSPTPAAYAVAAQFEEVLVDEYQDVNPAQDAIFRAVSRE---- 419 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 + LF VGD KQSIY F A P+ + +K + + I L +FRS Sbjct: 420 ------EQNLFMVGDVKQSIYRFRKATPELFIEKKETFSPY--DGHTYPARIVLGRNFRS 471 Query: 267 TADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 A + V+ VF + G+ + + + G Sbjct: 472 RAGVAEAVNFVFGQLMSRELGGIDYGEEERMTPAAVYFDRPG--------------NEAD 517 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKR 383 + +A + AR +A T++ M+ T+ G R + KD +L+R Sbjct: 518 FALHLVETAAYDENDDNAMLEARYVARTVARMLREGYTVQGAGGPRSVVCKDFCILLR-- 575 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 L LK + + + + ++AL R + + D+ + ++ S Sbjct: 576 GANRLAQTYVDALKEE-GLPAYADIAGGYLGSYEVAVMLALLRVLDNPLQDIPLLSVMLS 634 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503 P+F FS DD+ + + + +Y + A F ++ + +L +A Sbjct: 635 PVFGFSPDDLAGLRLEHPKG-HLYLAVLARAKAEGGHFAAFVEMLDDLRRLAAVLPSDRL 693 Query: 504 FTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562 + + G L L++ E + L + +++ Sbjct: 694 ILRVYESTAFLDICTAMPGGAGRRANLRLLLDYARSYEAAGFRGLAGFVRFVDRVAEDAD 753 Query: 563 RAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + + + VR+M++H +KGLE PV + G + + P + Sbjct: 754 LPPASTVSEDADVVRVMSIHKSKGLEFPVCIVAGLGRRFNREDSRRGTLFHPEYGFGSYL 813 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK--- 675 + ++ + E R+LYV MTRA ++LI T+ + Sbjct: 814 RDPALSCHVTTLPREVVRIETERGSMAEEMRVLYVAMTRAKEKLICVAAVPTAEKAVASA 873 Query: 676 -----------------SNQRTWYDMVYD-----------SFHNDERVKKIKLTNSINKD 707 ++ + E + + +S+ Sbjct: 874 AALLRPDGAGIVPFAAMQAPNFMAWLLACVLRHPSCGCLRALAGLEELSILSTAHSMEPV 933 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 A P+ + ++L+ E + P + P L S I + Sbjct: 934 IAQAEGACKTAPDVEQETPQPVDEELLAEIRRRIAFVYPHEPLTRLPSKLAVSEIAEERL 993 Query: 768 TNLE------SLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAK 819 + + +G +H +Q+ + L + K+A L P + Sbjct: 994 HRDFGVRRPSFVQAGLSAAQKGTALHTFMQLADLANLHSTEDVAAEARRLVKSAHLLPEE 1053 Query: 820 EYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCPK------------------- 859 + LE P+ + + E+ + ++ + Sbjct: 1054 GKAVDAAQVLAFLETPLFARLRRAERIWKELRFNLTVSPDELSGMGMDVPAPTNTALDVR 1113 Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 I++ G D + + FI +YKT H + + + QL++Y + + + Sbjct: 1114 AQIVLQGMADVVWVEDGRYFILDYKTDH---AGADELRARYAGQLALYARAVGQIFRTPV 1170 Query: 920 LVCLLIYVSEPKVFII 935 C L ++ + + Sbjct: 1171 AACYLYGFAQGALVEL 1186 >gi|315652079|ref|ZP_07905080.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum DSM 3986] gi|315485726|gb|EFU76107.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum DSM 3986] Length = 1152 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 150/893 (16%), Positives = 290/893 (32%), Gaps = 93/893 (10%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + I K + KL K D F K R A + L K + + E K+ + Sbjct: 288 KAIRDKYKENILKLAKDYD-FDKDRVSLEEKSEKAKIRAVVDLTKKYISLFNEKKRDKNL 346 Query: 147 LDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 +DF D+ LL + S + +E + I IDE QD++ +Q ++ ++ Sbjct: 347 VDFSDIEHLALGILLDENKNSTEVAEAYKKEFSEIYIDEYQDSNYLQEAIVMAI------ 400 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 +F VGD KQSIY F A PK +++ + + + + L +FR Sbjct: 401 ------EKNNIFMVGDVKQSIYGFRQASPKLFMKKYKNFKSFEGADNEDAKKVILSKNFR 454 Query: 266 STADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 S ++L + +F E+ G+ D + ++ + + Sbjct: 455 SRKNVLDGANAIFKKIMKEDIGGIEYDEDAALYLGANF---------------EEGKKEY 499 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 + T S + AR IA I + R ++ DI++LVR Sbjct: 500 ISEVMLTDVGSIEDDTSDIELEARAIAKRIKEL---KKDLKVDGGRDLKYSDIVILVRSN 556 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 I + ND I + ++ ++A+ I + D+ L S Sbjct: 557 -----IGESIAKVLNDENIPAYAENNKGYFKTFEVRKILAILAAIDNPYSDVDLTAFLNS 611 Query: 444 PLFNFSEDDIFKICTQRHETET--------------VYEYIQKFANCGISKFQHVIKYIH 489 + ++ ++ I + + E K + + + Sbjct: 612 EIVGMTDLELANIVADYRKKQNIEKSKQVRMMDAVIFEENEGGIEESTKKKIRTALYLLD 671 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548 E + + + I + G + L ++ + YS L Sbjct: 672 EYRQKSTYMNIQSLLQDIYNNTDFLNITAAMPGGQVRKANLMLLISKARTFGNSGYSGLY 731 Query: 549 ELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 I + + N + VRIMT+H +KGLE PV FL +T Sbjct: 732 NFIRYIAKLKDFDNDFGEASILSENDDIVRIMTIHKSKGLEFPVCFLANTDRSFNKTDLK 791 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + M I K + + + L E R+LYV +TRA +++I Sbjct: 792 QGMVIDNDFGLGMQYVDSEHNIKDSSIKQNVIKYKLGTELMGEELRVLYVALTRAMEKMI 851 Query: 664 ICKHSNTSNEKK------------SNQRTWYDMV----YDSFHNDERVKKIKLTNSINKD 707 + N + + ++ D++ + + L + Sbjct: 852 VSGTCNNIEKSLEINKENPKFLDIRSCNSYLDLILLSFDKIHFDLRKYDYKSLLDDEKLT 911 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 + + + +E +L + K ++E ++ S + Sbjct: 912 QKEVRDLHKVFEGSDVQNYDELKSRLDFLYPYSVNVDLKTKFSVSEIKRMSQSEDFELAE 971 Query: 768 TNLESLLSD---NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + + RG HKL+Q + + + + L Y+ L Sbjct: 972 NKRKEKSDSKLTSNAGERGNAYHKLMQKLHYENIDGFADRLD-FVKAEIALLKNVSYREL 1030 Query: 825 L--LSITRLLENPMMTTA--MSCDSYSEVSV-------SGKINCPKKDIIISGRIDQISI 873 + I + L+ + T + E K+ + ++I G ID Sbjct: 1031 INPEDIVKFLDTSLGKTFIKYRKNLKRENRFIMGISAREAKMGDSDETVLIQGVIDAYID 1090 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + + +YKT H ++ + + QL +Y+K L+ K + + IY Sbjct: 1091 TDNGLILADYKTDHV--KDEAVLIDRYKTQLGLYKKSLE-MSTGKQVRDVFIY 1140 >gi|50913958|ref|YP_059930.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394] gi|81602230|sp|Q5XCW6|ADDA_STRP6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|50903032|gb|AAT86747.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394] Length = 1222 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 161/1025 (15%), Positives = 327/1025 (31%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|21910050|ref|NP_664318.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes MGAS315] gi|81479324|sp|Q8K815|ADDA_STRP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|21904241|gb|AAM79121.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes MGAS315] Length = 1222 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 160/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + ++ D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVFAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 +Q+ + + K +K + A+ S +D I + Sbjct: 682 MQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 1041 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|251764601|sp|Q9A0H3|ADDA_STRP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA Length = 1222 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 159/1025 (15%), Positives = 325/1025 (31%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFSLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I + + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIATDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE + V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|320546489|ref|ZP_08040804.1| exonuclease RexA [Streptococcus equinus ATCC 9812] gi|320448874|gb|EFW89602.1| exonuclease RexA [Streptococcus equinus ATCC 9812] Length = 1208 Score = 344 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 140/878 (15%), Positives = 292/878 (33%), Gaps = 120/878 (13%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + Y +AK + +F D+ ++L++ IR + + +++DE QD Sbjct: 362 FVQDFSEQYLQAKIQENSFEFSDIAHFAIEILEENPD---IRKFYQDKYHEVMVDEYQDN 418 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q ++ L S+ F VGD KQSIY F A+P+ ++ + Q+ Sbjct: 419 NHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQENP 467 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + +I L +FRS +++L + +F+ L ++S I + G+ Sbjct: 468 EH----GKLILLKENFRSQSEVLDATNSIFTH------LMDESVGEILYDGMHQLVAGSD 517 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 E + + +ES + +A I + + Sbjct: 518 AQKEAHPENETKVLIYDTDEANGAPEGTEEESINPNEVKLVAKEIIRLHNEEH------- 570 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRF 427 + +DI +LV R Y I V + + ++ R Sbjct: 571 --VPFEDITLLVSLRTRNN----AILQTFEYYGIPLVTDGGEQNYLKSVEVMVMLDTLRA 624 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------- 477 + + +D + V +++SP+F F+EDD+ ++ Q E E QK + Sbjct: 625 LDNPLNDYALVALMRSPMFAFNEDDLARLALQTLEDEHKANLYQKLEHALSGTGEHADLM 684 Query: 478 ----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEF 532 +K + + + A++ S +D I + + + L Sbjct: 685 TAALQNKLKDFMDCLASWREFAKWHSLYDLIWKIYNERFYYDYVGNLPRAEQRQANLYAL 744 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVV 588 E+ + L I +++ + N V +MT+H +KGLE V Sbjct: 745 ALRANNFERGGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLEFKYV 804 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIK 637 F+++ + + + + + Sbjct: 805 FILNLDKRFSIQDMTSPLILSRQNGAGIKYLADMREELETDYFPAVKVSMDTMPYQLNKR 864 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN----------------EKKSNQRTW 681 L+ + E RLLYV MTRA +L + ++ ++ T+ Sbjct: 865 ELRLAMLSEQMRLLYVAMTRAEKRLYLVGKASAEKLVDKYSGKSENNHIPISERETFMTF 924 Query: 682 YDMVYDSFHNDERVK-----KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 D + + + + + K I + + + E I + +D Sbjct: 925 QDWILAIYDTYKNLPFKVEFVTDDDLTEEKIGQIEMTSAIKPDDLKDNRQTENIAEALDR 984 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------------NLESLL 774 + +KL + K IN P + PS + + S Sbjct: 985 LEAVEKLNTEFKAAINLPSLRTPSQVKKLYEPVMDVDGVDVMAKPHQAKPTFELPDFSKK 1044 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834 + + G +H+L+Q I + + ++ +A+ + L + E Sbjct: 1045 AKVEATAIGSAMHELMQRIILSEQVTLDDITSALAQVSAEDDVKSCIR--LEHVLDFFEG 1102 Query: 835 PMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 + + + Y E + + + ++ G +D + I +F+YKT + Sbjct: 1103 SELGQMIQKNVDKIYREAPFAMLKEDPESNEKFVVRGIVDGYFLFDDRIVLFDYKTDRYT 1162 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 E I + Q+++Y + L SY + + L+ + Sbjct: 1163 --NSEDIKKRYQGQMALYAEALSKSYRIEQVDKYLVLL 1198 >gi|228477150|ref|ZP_04061788.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126] gi|228251169|gb|EEK10340.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126] Length = 1217 Score = 344 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 152/1022 (14%), Positives = 322/1022 (31%), Gaps = 148/1022 (14%) Query: 13 YELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + + D F + + + L+ A + L Sbjct: 243 KDGLLADFLA---FLRDHLGLAQREFAKAKYLNNVSDAISLLEGALAN--DQTDMEDLLK 297 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY------------KM 119 LT +T+ +++ KE K+++EF+ +T + Sbjct: 298 QLLTLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + Y +AK + +F D+ +L++ + + Sbjct: 358 LPLLELLQAFVLDFSDQYLQAKTQENAFEFSDIAHFAIRILEENPE---VAASYRDRYHE 414 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QD S Q ++ L S+ F VGD KQSIY F A+P+ Sbjct: 415 VMVDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNG 463 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRH 297 + ++ + +I L +FRS +++L + VFS + + D T + Sbjct: 464 KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S + + E ++ D E S + S + I + Sbjct: 520 GSEKQKEPHPENETEVLIYNSDEASVTPDEEGADQPISSGEIS-------LVIKEIIKLH 572 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHL 416 ++ +DI +L R ++ I +V ++ + + L Sbjct: 573 EQG----------VRFEDITLLAPTRNTYLD----LMASFEEHGIPLVPDEYKSSYLESL 618 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 + ++ R I + +D + V +L+SP+FNF+EDD+ +I Q + + + + Sbjct: 619 EVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKS 678 Query: 477 G----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 G +K I+ + + +++ S +D I + S + Sbjct: 679 GLHPEVVTQGLDAKLTLFIETLADWRDYSKWHSLYDLIWKIYDDRFYYDYVGSLPRAEQR 738 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580 L E+ + L I +++ N V +MT+H + Sbjct: 739 QANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVP-KNAVSLMTIHKS 797 Query: 581 KGLESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKS 627 KGLE VF++ + H + + L D + Sbjct: 798 KGLEFKYVFVLQMNRKFIGHSRDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVL 857 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS---------------- 671 + + ++++ E RLLYV MTRA +L + + Sbjct: 858 ETLTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLP 917 Query: 672 ---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----L 724 ++ + + W + +F + ++ + + N Sbjct: 918 VALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAIGQVEVQAVVNADDLSNN 977 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------------- 768 + E IK+ + + +KL I+ P + PS + + Sbjct: 978 RQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEV 1037 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 + G H+L+Q + + ++ + Sbjct: 1038 QPLETATTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQAL--SRVSADD 1095 Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISI 873 + + L + + + ++ E + + K+D ++ G ID + Sbjct: 1096 QVKARVQLEKLLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLL 1155 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + I +F+YKT + + Q+S+Y K L +Y + LI + + Sbjct: 1156 LEDRIVLFDYKTDRFT--HPSELKERYKGQMSLYAKALSQAYQIDKIDKYLILLGGKDLE 1213 Query: 934 II 935 ++ Sbjct: 1214 VV 1215 >gi|300361736|ref|ZP_07057913.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03] gi|300354355|gb|EFJ70226.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03] Length = 1204 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 170/1025 (16%), Positives = 325/1025 (31%), Gaps = 136/1025 (13%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ----------TLQQASQTQCIEERFS 67 + + PL +VSD+ V + A+ L ++ ++ ++ Sbjct: 210 QQIKPLLLKEVSDLKAEVEALLAEPEINGSDLAKVKENYDIFSNRLDSFLESLNKDQPYN 269 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSP----------DLKEKLKKSQDEFIKIRDRFNTY 117 + + + KF + ++ DL ++LKK F + ++ Sbjct: 270 EIRASLMNCKFEKAVRKSKKWSDESIEVYQESQDLKSDLNDQLKKIFASFFVVEEKEQVA 329 Query: 118 KMFKSTLASLTLAKY---LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKI 173 + KS T+ L + + K++ ++D+ D+ +L +A I + Sbjct: 330 VLQKSEKIVKTIVAAEKKLIQKFGQLKREQNLIDYSDMEQFAFSILTTDTSNAHIAQEYY 389 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 ++ N ILIDE QD + +Q +I+++ TLF VGD KQSIY F A Sbjct: 390 QEKFNEILIDEYQDVNALQENIIKAI---------KKKGQNTLFMVGDVKQSIYGFRQAR 440 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDS 291 P L + K I L +FRST + V+++F+ N G+ Sbjct: 441 PDLFLSKYHTYGKD-----NDSEKIILADNFRSTKRVTKTVNELFNPVLTTNFGGIDYKK 495 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 ++ +S + + ++ S ++ + + + Sbjct: 496 EGQLQFGASY---------YPADLPTASEYIFTDKKQTQSAYEDQYGDEMDFSEVQMVIA 546 Query: 352 TISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + + + + KR ++ DI ++ R R D + + D Sbjct: 547 RIKQLKAENFQVWDRRTQLKRPLEYSDIAIITRTRSD----NLQVMQEFAKADLPLFVTD 602 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 + +M R I + + D+ V +++SPLFNF E ++ ++ + Sbjct: 603 AQNYFQTFELIMIMNYLRLIDNAQQDIPLVAVMRSPLFNFKEPELAQLRVKTPAGNFYTA 662 Query: 469 YIQKFANCGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 + K + +K + L A + I + G + Sbjct: 663 LTNFASVNSALGKKCREFLKQLETLRSFAATHRISELVWSIYEKTHLLEIVTGLPNGQQR 722 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTA 580 L+ E + L + IS +E+ N V++MT+H + Sbjct: 723 RVNLESLYERATSYESAGFKGLYQFISFIERMRKNQKDLAQPLLSDKADNAVKLMTIHAS 782 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE PVVF++ G Q + I G+ I + + + S + Sbjct: 783 KGLEFPVVFVMGLGHQYQTRDLSGNFTISQKEL---GLTIKEKNYRIDSLVKSLADVQKR 839 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---------------- 684 + EE R+LYVG+TRA +LI+ N K+ + D Sbjct: 840 QQMLEEEARILYVGLTRAQQKLILVASVNEIENKQKKWLSELDQKKDTIPLVKKINAQSP 899 Query: 685 -------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT--------------- 722 + D+ ++ + + PE Sbjct: 900 LDFLGPKLEQRHEFDQTIQNMTSALEEQDKLYYLKFDLDLEPEKVKSQNENSQEVNSKVN 959 Query: 723 -----------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 P E +I K PI ++ +++ S + Sbjct: 960 KVVQELYDFKYPFEDATKTTAYQSVSEIKKAFNDPIDKELENSRLISSSNRYLQPIDETP 1019 Query: 772 SLLSDN--QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSI 828 + L + G +H +LQ +N + L Sbjct: 1020 TFLEEQKFTGAEIGTAMHLVLQYYNYEGNKDLENLDQEIDQLVELGKLNSLMVPYLSKEA 1079 Query: 829 TRLLENPMMTTAMSCD---SYSEVSVS---------GKINCPKKDIIISGRIDQISISQQ 876 + E S + P I++ G +D ++ Sbjct: 1080 LNWFVMSDFAKEFWKQPNKLHRESQFSSLVNASELFSDFSDPSAKILVHGTVDGYFEAKD 1139 Query: 877 NIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPK 931 + +F+YKT E I + QL +YE+ L + +K + LI + K Sbjct: 1140 GLVLFDYKTDFVDKTNEEQAIEKIKQKYTGQLRLYEQALNEMNNDKKVIGKYLILLDARK 1199 Query: 932 VFIIP 936 V + Sbjct: 1200 VVPVD 1204 >gi|306821093|ref|ZP_07454709.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550786|gb|EFM38761.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1149 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 181/979 (18%), Positives = 353/979 (36%), Gaps = 98/979 (10%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I L L + + S E ++K + L+ + + ++ + +F Sbjct: 212 REDIATTLDDLIEKSETIYKMSIDTSYEENIVDDIEKLRYLKDIALNKGYDDFVDEIKTF 271 Query: 73 FLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKSTLAS 126 L++ +K +T I ++ +K+ + ++ K + + Sbjct: 272 SLSRLKAKKKTDDVQVTDIIKDVRTNIIKKIIDKNLKKYTVKSDSYIKYMNKSYNAVRGL 331 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L Y + K + + DF DL DLLK + IR K+ ++ ++I DE Q Sbjct: 332 CNLVGEFEKVYRQKKYEQNMFDFNDLEHFALDLLKNEE----IRTKVRKKYSYIFYDEYQ 387 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 D++ + +I S+ + LF VGD KQSIY F A+P +++ + Sbjct: 388 DSNEVHDSIIESIAAE-----------NNLFFVGDVKQSIYGFRLADPSIFIKKYEDYK- 435 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQ 304 + + I+L +FRS+ IL + +F + + D +R Sbjct: 436 ---GNTENNAKIDLSSNFRSSRQILDFCNLIFENIMVKSTSDMDYDEDAMLRTNDETPYD 492 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 ++L S + ++ D I+A A I M+ D Sbjct: 493 EKNIELNFIDKSHDEDDEKLEEMLSNLSDD--------DIMATLTAKQIVKMMEDD---- 540 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + I KDI+VL R + Y I V + + D L + + L Sbjct: 541 ----KSINFKDIVVLKRSFANGT---SAYSKAFLQYNIPVFIDYQSSSFDVLEVSIFIDL 593 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----EYIQKFANCGISK 480 + I + DL + L S + FS ++I KI + + + Y Y +++ + +K Sbjct: 594 LKIIDNIRQDLPLISTLMSGVGGFSIEEITKIKSSNLDEKFFYNVFFAYEREYDDEISAK 653 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539 + K I + + + +F +L K + S G+ + L Sbjct: 654 IRKFRKKIEDYAKLQNYMRLDEFVDFVLIDSKYKDYVSSLTSGDMRLQNLSIVREKATEF 713 Query: 540 EQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 QN SL + L+ + S N N VRIM++H +KGLE P+V + D Sbjct: 714 MQNENKSLFNFLLYLDSILKNKSDRIEPQKVSENQNVVRIMSIHKSKGLEFPIVIVNDIQ 773 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + ++ I +L +I LKK+ E R+LYV Sbjct: 774 KKFNMQDTKSEVIIDSNLGIGVDYVDVDENYYLPTLSKKCIIAKLKKNILSEEIRILYVA 833 Query: 655 MTRASDQLIICKHSNTSNEKKSNQ-------------RTWYDMVYDSFHNDERVKKIKLT 701 +TRA +LI+ H N++ +K + + D++ +F ND + + Sbjct: 834 LTRAKKKLILNGHVNSNLQKTRSYMGTGLFPKNLNSIDNYQDLILYAFRNDMEFFEKNVE 893 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREET-------------IKQLMDEQKIPKKLFSPIK 748 +S + + LE+E+ ++ + K Sbjct: 894 DSEENRISSVNFVNIDSLTDNILEKEDVKLKFYEMLNNITLSEEEKNTLDEKYLFEYKYK 953 Query: 749 NDINEPYILNPSTIDTKGKT-NLESLLSDNQTFN--------RGLIIHKLLQVIFTLPEH 799 +D+ + +N +++ + +E LL+ ++ + G + H LQ I + Sbjct: 954 DDVEKEIKINVTSLSKEKNKYRIEKLLTYSEYIDKSYFSPEKIGTLNHMFLQHIDFEKSY 1013 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKIN 856 ++ + E ++ I L++ + Y E S Sbjct: 1014 TLEDLKNQLIYMIDNEFITNEESEVINLSRIYDFLQSEFGQRIRNAQKIYKEESFVMNY- 1072 Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916 ++SG +D + +I + +YKT H E+ + + +QL +Y+ ++ ++ Sbjct: 1073 ---GGSVLSGTVDLFFEEENHIVLVDYKTDHIPQYEMTNRASYYKSQLDLYKDAIQKAFG 1129 Query: 917 NKSLVCLLIYVSEPKVFII 935 K + ++S K + Sbjct: 1130 KKVSQSYIYFLSLGKYVEV 1148 >gi|15674822|ref|NP_268996.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes M1 GAS] gi|13621954|gb|AAK33717.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes M1 GAS] Length = 1210 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 159/1025 (15%), Positives = 325/1025 (31%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 232 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 291 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 292 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 347 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 348 MYQKDCFSLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 404 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 405 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 453 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 454 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 507 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 508 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 562 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I + + Sbjct: 563 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIATDGGQQNY 609 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 610 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 669 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 670 IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 729 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE + V Sbjct: 730 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVN 789 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 790 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 849 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 850 VKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 909 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 910 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 969 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 970 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1029 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1030 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1087 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1088 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1147 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1148 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1205 Query: 931 KVFII 935 ++ + Sbjct: 1206 EIVEV 1210 >gi|71903240|ref|YP_280043.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180] gi|123640147|sp|Q48UB8|ADDA_STRPM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|71802335|gb|AAX71688.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180] Length = 1222 Score = 343 bits (879), Expect = 1e-91, Method: Composition-based stats. Identities = 163/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYSIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S + Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777 + + ETI + +D + +L + + I+ P + PS + + LE + D Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 1041 Query: 778 --------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--REIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|281490502|ref|YP_003352482.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. lactis KF147] gi|281374320|gb|ADA63853.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis KF147] Length = 1203 Score = 343 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 175/1044 (16%), Positives = 313/1044 (29%), Gaps = 154/1044 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54 G +S + D + + + S+ G IL L Sbjct: 207 GFETYKSLIDLSADFSADIKENLLIFFELLETSLTNGVVAKKGAGRDKANLILDNKNELL 266 Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112 +A T+ L S + K+ I + K K+ L S+ + +IR Sbjct: 267 EAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPGEIRKFV 326 Query: 113 ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + F+ Y E KK ++ D+ ++L++ Sbjct: 327 DKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENSFEYSDIAHFAIEILEEN 386 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 IR + + + I+IDE QDTS Q ++ L S+ LF VGD K Sbjct: 387 PD---IRETLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F A+P L + + K +I L +FRS ++LT + +F + Sbjct: 433 QSIYGFRLADPGLFLEKYKDYAK----TENPNQLIRLKENFRSRGEVLTFTNDIFKHLMD 488 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + G + + + + P+ + + S Sbjct: 489 EKLGEMTYGKEEALV------QGNITDYPV---EPEKDFYPELLLYKENTSDEETDESEV 539 Query: 344 I----LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 + A I +I ++ KDI +LVR + + I + Sbjct: 540 RISDGEIKGAAQEIKKLIEAG----------VEPKDIAILVRSKSNNNKIEDIL----LS 585 Query: 400 YKISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 Y I VV R + + ++ + R I + DLS V ML+SPLF F+ED++ +I T Sbjct: 586 YDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRIST 645 Query: 459 QRHETETVYEY-----------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 Q ++ + +K + K E + + HD I Sbjct: 646 QGSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKI 705 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIK 562 + + G L E + Y L + + +EQ Sbjct: 706 YTETYYFDYVGALKNGEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLAS 765 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 N VR+MT H +KGLE VFL++ S+ + + + + + Sbjct: 766 VNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSRENGLGMKLIADL 825 Query: 623 PQS------------KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 K +++ E R+LYV TRA +L + Sbjct: 826 KDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKE 885 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA------------------- 711 +++K + D+ + A Sbjct: 886 TDKKSELDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPIKLNVYTKEELEAEK 945 Query: 712 ------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID-- 763 ++ E+ + + + + P + I PS + Sbjct: 946 LEFTSQPDFKKLVEESEKFDNIMAYSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKR 1005 Query: 764 -------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804 K + G H +Q + + Sbjct: 1006 SYEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTAAEIGSATHSFMQYADFS----QADL 1061 Query: 805 ITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPK 859 + T + + K + + I L + + E S K Sbjct: 1062 FSFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFAK 1121 Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 + I+ G D I +F+YKT I I + Q+++Y + LK +Y Sbjct: 1122 EQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSTISEIKERYRDQMNLYSEALKKAYDVN 1181 Query: 919 SLVCLLIYVSEPKVFIIPQNKLNK 942 + LI + P+ + KL+ Sbjct: 1182 QVDKYLILLGGPQQVFV--EKLDD 1203 >gi|139474037|ref|YP_001128753.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes str. Manfredo] gi|251764552|sp|A2RFA8|ADDA_STRPG RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134272284|emb|CAM30537.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes str. Manfredo] Length = 1210 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 161/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 232 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 291 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + ++ D+ K + + R Sbjct: 292 RDFKCLYG----KAGLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 347 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 348 MYQKDCFPLLEQLQDFVLVFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 404 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 405 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 453 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D + Sbjct: 454 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVSY 507 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 508 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 562 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 563 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 609 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 610 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 669 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 670 IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 729 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 730 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 789 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 790 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 849 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S + Sbjct: 850 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 909 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 910 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 969 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 970 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1029 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1030 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1087 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1088 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1147 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1148 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1205 Query: 931 KVFII 935 ++ + Sbjct: 1206 EIVEV 1210 >gi|260887200|ref|ZP_05898463.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185] gi|330839034|ref|YP_004413614.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185] gi|260863262|gb|EEX77762.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185] gi|329746798|gb|AEC00155.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185] Length = 1251 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 158/1055 (14%), Positives = 343/1055 (32%), Gaps = 151/1055 (14%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 GL+ E + K + + + L A + + Sbjct: 225 AAGLAAIERL--VEKAAALGYETCHAALEGDEKILK------DLLDALAARDWEGLRQAF 276 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 ++ F +K + + +K++LKK ++ + + + + Sbjct: 277 SSYAHARMSFPKGMDEEEKEEAKRLFTQPRDRVKQRLKKLRETYFHATEEELLDDLRALS 336 Query: 124 L---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY------KID 174 A + + K A ++ AKK+ V+DF DL +L +D S + Sbjct: 337 GMAHAIVDVVKDFTASFQAAKKERGVVDFNDLEHFALAVLCDKDASEGELRPSAQALALR 396 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++ +++DE QDT+ +Q ++ + D LFAVGD KQSIY F A+P Sbjct: 397 EKYEEVMVDEYQDTNGVQEAILSLVARDD-----------NLFAVGDVKQSIYRFRLADP 445 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292 + L+++R G+K++ I+L ++RS A +L V+ +FS A L+ D Sbjct: 446 QLFLKKQREYPTL----GEKYARIDLSENYRSRAGVLAAVNWIFSQLMTPEAMELTYDDA 501 Query: 293 TTIRHRSSRIGQ-----VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA----- 342 + + G V+L S +++ + ++ + Sbjct: 502 AALHFAALYPEDSPKSLAGAVELHIIESDAESSVEPEEEDEEKAETSAVADGGAETPEGE 561 Query: 343 --------SILARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 ++ A IA + ++ + + R ++ +DI++L+R + Sbjct: 562 EEEELKGFALEAAFIARRVRELMESGALVADKDGYRPLRWRDIVILLRA---VRTKADIL 618 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 D I ++ ++A+ I + D+ L SP+ S ++ Sbjct: 619 LETLRDADIPAYATLDAGYFQATEVRVVLAVLAVIDNARQDVPLAAALCSPIVGLSVSEL 678 Query: 454 FKICTQRHETETVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ E + + KF+ K ++ + + + S + I Sbjct: 679 AELRLAALEEDIFGALLVVNDPAAKFSASLREKVDAFLRLLKGWRDLVRRVSVPELIWQI 738 Query: 508 LGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTI 561 G L + E+ ++ L + +E + + Sbjct: 739 YRDTGYYDYVGGMAGGLLRQANLRMLADRARDYEETNFRGLFRFLRFIEKMQQMETDLSA 798 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 R + VRIMT+H +KGLE PVV + GS+ + + + L Sbjct: 799 ARTLGEGEDVVRIMTIHKSKGLEFPVVIVAGLGSKFNMQDASQDLLMHRELGLGLYRTER 858 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT----------- 670 + + + +K+ ++ E R+LYV MTRA ++LI+ + Sbjct: 859 EKSLRYSTFAREAVAERIKRESKAEELRVLYVAMTRAREKLILVGSTKKLAACAEGWCSF 918 Query: 671 --------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 ++ D + + ++ ++ + + Sbjct: 919 VTQTERALPAHAALAANSFLDWLGMTVARHADGAPLREKAALLEKRVAPEGEDDSRWQVE 978 Query: 723 PL-------------------------EREETIKQLMDEQKIPKKLFSPIKND------- 750 + E E ++ D +++ ++P D Sbjct: 979 IVPASAVASVSAAVAEDNELFEKLRRGEPLEASEEKDDVEQMLAWQYAPHGVDNVPAKLS 1038 Query: 751 -INEPYILNPSTIDTK-----------------GKTNLESLLSDNQTFNRGLIIHKLLQV 792 + + + + + G ++H +LQ Sbjct: 1039 VTELKRRFSVEDAAEEKAYIPLKEVHGSSKNVFKRPDFMQEKAGLSAAEYGTLMHAVLQH 1098 Query: 793 IFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEV 849 I + R+ + L P + L ++ L++P+ T + + E+ Sbjct: 1099 IDLAGDTGREGLEKQLANMVEKELLLPEQAKAVRLDAVASFLQSPLGTRMKKARRLWHEL 1158 Query: 850 SVSGKINC--------PKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900 S ++ P+ I + G ID + + + + +YKT + + + Sbjct: 1159 PFSRRLEAHSFYPEAEPEARIFVQGVIDVLFEDEAGALVLLDYKTDKNT--RPAAVREKY 1216 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 Q+ IY + ++ K L + + V + Sbjct: 1217 RLQIEIYTEAVEAILGRKVAERCLYLLQDGSVVQL 1251 >gi|28896252|ref|NP_802602.1| ATP-dependent exonuclease, subunit A [Streptococcus pyogenes SSI-1] gi|28811503|dbj|BAC64435.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes SSI-1] Length = 1153 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 160/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 175 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 234 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + ++ D+ K + + R Sbjct: 235 RDFKCLYG----KAGLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 290 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 291 MYQKDCFPLLEQLQDFVFAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 347 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 348 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 396 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 397 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 450 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 451 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 505 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 506 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 552 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 553 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 612 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 +Q+ + + K +K + A+ S +D I + Sbjct: 613 MQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 672 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 673 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 732 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 733 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 792 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 793 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 852 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 853 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 912 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 913 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 972 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 973 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1030 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1031 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1090 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1091 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1148 Query: 931 KVFII 935 ++ + Sbjct: 1149 EIVEV 1153 >gi|306827618|ref|ZP_07460898.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC 10782] gi|304430181|gb|EFM33210.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC 10782] Length = 1222 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 160/1025 (15%), Positives = 326/1025 (31%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+S +F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSSMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|326405601|gb|ADZ62672.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis CV56] Length = 1203 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 178/1043 (17%), Positives = 321/1043 (30%), Gaps = 152/1043 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54 G +S + D + + + S+ G IL L Sbjct: 207 GFETYKSLTDLSADFSADIKENLLIFFELLETSLTNGVIAKKGAGRDKANLILDNKNELL 266 Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112 +A T+ L S + K+ I + K K+ L S+ + +IR Sbjct: 267 EAITTKDFTTFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPGEIRKFV 326 Query: 113 ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + F+ Y E KK ++ D+ ++L++ Sbjct: 327 DKIKHGQLIEKYQNQTFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEEN 386 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 IR + + + I+IDE QDTS Q ++ L S+ LF VGD K Sbjct: 387 PD---IRETLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F A+P L + + K +I L +FRS ++LT + +F + Sbjct: 433 QSIYGFRLADPGLFLEKYKDYAK----TENPNQLIRLKENFRSRGEVLTFTNDIFKHLMD 488 Query: 284 AQGLSEDSTTTIRHRSSRIGQ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + I + +++ ++ + + + + Sbjct: 489 EKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETD--------ESEVR 540 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 + + A I +I ++ KDI +LVR + + I + Y Sbjct: 541 ISDGEIKGAAQEIKKLIEAG----------VEPKDIAILVRSKSNNNKIEDIL----LSY 586 Query: 401 KISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 I VV R + + ++ + R I + DLS V ML+SPLF F+ED++ +I TQ Sbjct: 587 DIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISTQ 646 Query: 460 RHETETVYEY-----------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 ++ + +K + K E + + HD I Sbjct: 647 GSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKIY 706 Query: 509 GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKR 563 + + G L E + Y L + + +EQ Sbjct: 707 TETYYFDYVGALKNGEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASV 766 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 N VR+MT H +KGLE VFL++ S+ + + + + + Sbjct: 767 NIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSRENGLGMKLIADLK 826 Query: 624 QS------------KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 K +++ E R+LYV TRA +L + + Sbjct: 827 DEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKET 886 Query: 672 NEKK-------------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 ++K N + + N ++ + E Sbjct: 887 DKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPMKLNVYTKEGLEAEKI 946 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK------LFSPIKNDINEPYILNPSTID--- 763 E+++ +E E +M +K P + I PS + Sbjct: 947 EFTSQPDFKKLVEESEKFDNIMAYSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRS 1006 Query: 764 ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 K + G H +Q + + Sbjct: 1007 YEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTAAEIGSATHSFMQYADFS----QADLF 1062 Query: 806 TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKK 860 + T + + K + + I L + + E S K+ Sbjct: 1063 SFQVTLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFAKE 1122 Query: 861 DIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 I+ G D I +F+YKT I I + Q+++Y + LK +Y Sbjct: 1123 QYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQ 1182 Query: 920 LVCLLIYVSEPKVFIIPQNKLNK 942 + LI + P+ + KL+ Sbjct: 1183 VDKYLILLGGPQQVFV--EKLDD 1203 >gi|94990159|ref|YP_598259.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270] gi|251764561|sp|Q1JHM1|ADDA_STRPD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94543667|gb|ABF33715.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270] Length = 1222 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 162/1025 (15%), Positives = 327/1025 (31%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D+ Sbjct: 466 PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDALY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D I + Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE +A V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S + Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES------- 772 + + ETI + +D + +L + + I+ P + PS + + LE Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041 Query: 773 -----------LLSDNQTF----NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEVSHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIASNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGNP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|331702530|ref|YP_004399489.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri NRRL B-30929] gi|329129873|gb|AEB74426.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri NRRL B-30929] Length = 1252 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 150/1027 (14%), Positives = 310/1027 (30%), Gaps = 156/1027 (15%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEER-------FSLLSSFFLTQKFTPQKNIITQEINKK 92 E L + LQ+A + F LT+ QK Q I Sbjct: 250 EKAFTDQLAAIEALQKAVSNCTSFDDVRKSLTGFEFADLPRLTKPQGEQKQFHGQ-IRAI 308 Query: 93 SPDLKEKLKKSQDEFIKIRDR---FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 + K+ +++ + ++ + ++ K YE K + +++F Sbjct: 309 NQQTKKDFNAFCNKYFGMDEQANVDLMAAAKQRVAKLISAVKAFRTAYEATKHQRHLMEF 368 Query: 150 EDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 D+ +L + ++ K+ + I+ DE QD + +Q ++ L ++ Sbjct: 369 IDIEQAAYRILNDDSPQARQVQAKLRDQYYEIMTDEYQDNNRLQDAILNKLAKE------ 422 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 F VGD KQSIY F A+P+ + ++R A +I L +FRST Sbjct: 423 ---GGGNRFMVGDSKQSIYRFRLADPQMFINKQRTYS----LADNDDELITLADNFRSTE 475 Query: 269 DILTVVDKVFSIPENAQ-GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 ++ ++ +F + Q G + S ++ + + + + S + Sbjct: 476 NVDNFINLIFEQIMDRQVGEIDYSDAKLQFGAKYYPKDVNADVSVLLYSPKKPLSEGENL 535 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDT 386 D + IA I M+ + I R + D V+ R Sbjct: 536 PAEQVMD------ADVGQVEIIAQKIRQMVDDKEWIADGDGDRPVDYGDFAVISPTRGSQ 589 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 ++ + + DY I I+ +++L I + D+ V +L+SP+ Sbjct: 590 ITMSSIFK----DYGIPAEITGAKSYLKTTEIQVMLSLLSIIDNPYQDIPLVAVLRSPIV 645 Query: 447 NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVI--------KYIHELIHIA 495 E+ + + + E+V ++ + + N +K+ I K + ++A Sbjct: 646 GLDENQLAYLRINQKTGNYYESVLKFYRDYPNAEPNKYAQAIYPLIDTLFKQLDHFKNVA 705 Query: 496 QFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + I G + L E+N + L + + Sbjct: 706 KQDGLVALIWEIYNQTGYLDYVGGMPGGYQRQTNLHALYERAFDYEKNGFKGLFRFVLFI 765 Query: 555 EQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 E+ + + N V +MT+H +KGL+ P+VFL D G Q + + + Sbjct: 766 ERMQARDDDLATAVPNTSDNMVHVMTIHGSKGLQFPIVFLNDIGKQFNQQDTMGRAVLND 825 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 L + ++ K + E R LYV +TRA +L + + Sbjct: 826 HLGIGISYLDTKTREIQEPLQRQAVLDVTKNAGLSEEMRKLYVALTRAEQRLFLVGKVDP 885 Query: 671 SN------------------------------EKKSNQRTWYDMVYDSFHNDERV----- 695 ++++ +++ D + + V Sbjct: 886 GKGGSRKPTLDLQSIVESWQSQTEESAILLPMAERNSAKSYLDWIGPAISRHPDVVKDYG 945 Query: 696 --------KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK----- 742 S+ + ++ + Q + Sbjct: 946 DSRIVNLLADDPSRLSLEFYDNAKVAEGKKQAGRVAVDPRSWLDQQQPVESDSAVDRRQI 1005 Query: 743 -----LFSPIKNDINEPYILNPSTIDTKGKTNL--------------------------- 770 P + + S I Sbjct: 1006 KAIMNFRYPHQAATRTTAYQSVSEIKRLFDDPDNVQLGNYSLIDSDQLIKPGRYTQPSLA 1065 Query: 771 ------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 E+ G H +LQ I + + + + + Sbjct: 1066 TPKFISENGTHKPAPTEVGTATHLVLQQIDLHQQPTKATIVELIANLVKEGILEENVAGE 1125 Query: 825 L--LSITRLLENPMMTTAMS--CDSYSEVSVSGKINCPKK----------DIIISGRIDQ 870 + I R + + ++ +Y EV S + I+I G ID Sbjct: 1126 INVDGILRFYASSLGAVVLANPETTYREVPFSLLMKAKNAFKDFDQDDDQPILIHGIIDG 1185 Query: 871 ISISQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVS 928 S+ + +F+YKT P+ ++ + + Q+ +Y L + + L +S Sbjct: 1186 YVESEAGVVLFDYKTDRLTPKTTVDTVHERYDGQIRLYATALDQIL-GRPVTKKYLYLLS 1244 Query: 929 EPKVFII 935 ++ + Sbjct: 1245 SDQLVPV 1251 >gi|322373657|ref|ZP_08048193.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150] gi|321278699|gb|EFX55768.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150] Length = 1217 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 146/1015 (14%), Positives = 324/1015 (31%), Gaps = 134/1015 (13%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 + + D + + + + N + A+ +E+ L + Sbjct: 243 KDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAIILLEGALANDQTDMEDLLKQLLTL 302 Query: 73 F-------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKMFKSTL 124 +T+ + + NK + +L++ + + + Sbjct: 303 SGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVTQLREVDTQLTVLEVLTKHNDDILPLLE 362 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 + Y +AK + +F D+ +L++ + + +++DE Sbjct: 363 LLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPE---VAASYRDRYHEVMVDE 419 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QD S Q ++ L S+ F VGD KQSIY F A+P+ + ++ Sbjct: 420 YQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLF 468 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + +I L +FRS +++L + VFS + + T + Q Sbjct: 469 L----DNPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQ 524 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 ++ + E+ + + P + +S + I + Sbjct: 525 KE-----PHPENETEVLIYNSDETGANPDEEGPDQPISSGEISLVIKEIIKLHEQG---- 575 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMA 423 ++ +DI +L R ++ I +V ++ + + L + ++ Sbjct: 576 ------VRFEDITLLAPTRNTYLD----LMASFEEHGIPLVPDEYKSSYLESLEVMIMLD 625 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----------YIQKF 473 R I + +D + V +L+SP+F+F+EDD+ +I Q E + + + + Sbjct: 626 TLRAINNPLNDYALVALLRSPMFHFNEDDLARIAVQADEGQFYDKLLVACTKTGLHPEVV 685 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEF 532 +K + + + +++ S +D I + S + L Sbjct: 686 TQGLDAKLTLFTETLADWRDYSKWHSLYDLIWKIYNDRFYYDYVGSLPRAEQRQANLYAL 745 Query: 533 LNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 E+ + L I +++ N V +MT+H AKGLE Sbjct: 746 ALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVP-KNAVSLMTIHKAKGLEFKY 804 Query: 588 VFLVDTGSQVFSHKHIK-------------KMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 VF++ + H + + L D + + Sbjct: 805 VFVLQMNRKFIGHSKDGLSGKYIINREKGIGIKYLADLKDQINTNLPKLNVVLETLTFQE 864 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-------------------NEKK 675 K ++++ E RLLYV MTRA +L + + ++ Sbjct: 865 NRKEERRASISEEMRLLYVAMTRAEQKLYLVGKGSKEKLTQQYGTDVENNRLPVVLRDQL 924 Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI----AYEWSTHHPENTPLEREETIK 731 S + W + +F + + + + + + + + + E IK Sbjct: 925 STYQDWIMALDTAFMRKDLKFAVSFVEAEELTPEAIGQVEVQATVNADDLSNNRQTEDIK 984 Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTI---------------------------DT 764 + + + +KL + I+ P + PS + T Sbjct: 985 RALTVLESVEKLNQLYASAIDLPSVRTPSQLKTFYEPVMDTEGVDIMDKKEEVQPLETST 1044 Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + + G H+L+Q + ++ + + + Sbjct: 1045 TFELPDFGQKTKVTGAAVGSATHELMQRLILSDTVTLQDLTQAL--GRVSADDQVKARVQ 1102 Query: 825 LLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880 L + + + ++ E + + K++ ++ G ID + + I + Sbjct: 1103 LEKLLGFFDTELGKLILANRDKLRREAPFAMLAEDPASKENFVVRGIIDGYLLLENRIVL 1162 Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 F+YKT H I + Q+S+Y K L +Y + LI + + ++ Sbjct: 1163 FDYKTDHFT--HPSEIKERYTGQMSLYAKALSQAYQVDKVDKYLILLGGKDLEVV 1215 >gi|73667245|ref|YP_303261.1| UvrD/REP helicase [Ehrlichia canis str. Jake] gi|72394386|gb|AAZ68663.1| UvrD/REP helicase [Ehrlichia canis str. Jake] Length = 854 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 194/641 (30%), Positives = 312/641 (48%), Gaps = 43/641 (6%) Query: 39 METGNPTILKKAQTLQQASQTQCIEER--FSLLSSFF---LTQKFTPQKNIITQEINKKS 93 + G+ K + L + + + + F + + P +IIT++ Sbjct: 219 LSEGSIRDKKNSDKLVKWNALSQKYKLQKLNEYIKIFINLPSLEKKPISSIITKKTLANF 278 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 P++++ + Q+E + F T K+ + T + +AK Y++ K+K LD D+I Sbjct: 279 PEIEKIILNIQEEILNFIKMFYTKKIAERTTHIIEIAKCFIKLYQQDKQKLNYLDHNDII 338 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +LL D WI + +D +I+H+LIDE QD S+ QW +I L +FF G T Sbjct: 339 NLALNLLTNIDYKDWILFHLDSKIDHLLIDESQDNSIKQWNIISHLCHEFFSGIGTTEES 398 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIYSF A P +++T I+ SFRST IL + Sbjct: 399 RTLFVVGDIKQSIYSFQNARPDYFEPMCHYFTQQSTQH----KILHFTKSFRSTPPILKL 454 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VD+VF+ + +T I H R G V++W + ++ ++ F Sbjct: 455 VDRVFNNFRHEISF---NTEKIEHEIFRYNDSGYVEIWPIIDIKNHKN-------FSLDF 504 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 ++ ++ +LA IA I I I + R I A D L+LVR R I + Sbjct: 505 ENQTYSDTSLLLASTIANKIHTWITNKRIL-LARNRPITAGDFLILVRHRTC--FIDHVI 561 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 LK I +G D+F + D++ I+DL+ LG F+L E+DL+ + +LKSP+F F+E+ I Sbjct: 562 TALK-KLDIPTLGRDKFKIMDYIIIQDLVNLGEFLLLPENDLALIGLLKSPIFEFNEEQI 620 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 F + R++ ++E +Q KF ++ Y+ +LI+I++ SP + + I+ K Sbjct: 621 FDLAYNRNQQ-HLWEVLQ-------LKFSNISNYLKQLINISKLHSPLNLYHYIISEHKH 672 Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 +FI R G ++ EF+N ++ E N+ +SLQ I ++ P IK + + V+ Sbjct: 673 --KFIKRLGQSSTEITGEFINLLIQFESNNLNSLQAFIYWIKNINPEIKSDINHTKDYVK 730 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 IMT+H AKG+++P+VFL DT + S + + D+ P WI N++ Sbjct: 731 IMTIHNAKGMQAPIVFLSDTTTIPKSETQL--------VFDEEYTPFWI--RNDINDLCE 780 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 +L K EY RLLYV MTRA D+L I S N+ Sbjct: 781 NLKAKQKTQEYNEYLRLLYVAMTRAEDELYITGTSPVQNKS 821 >gi|187251691|ref|YP_001876173.1| UvrD/REP helicase [Elusimicrobium minutum Pei191] gi|186971851|gb|ACC98836.1| UvrD/REP helicase [Elusimicrobium minutum Pei191] Length = 1074 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 162/935 (17%), Positives = 317/935 (33%), Gaps = 86/935 (9%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 + + F+ + I + +S K + L AS + F + Sbjct: 209 HAKVLSGVCFENAKIAEQMSCVFLPPGGKSRKIERALASASIILQ--------EAAFAFK 260 Query: 77 KFTPQKN----IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132 + QK + ++ ++ ++ + + A +L Sbjct: 261 EGKFQKTENPGPEKLSSSDQAKGWDDENFETAVRIVDFARSLYPDRQMLIADA-FSLVSP 319 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + + + ++ F+DL++ T LLK + +R + ++ I IDE QDT +Q Sbjct: 320 FVNNARDTFEAQGLISFDDLLVKTRTLLKNNLI---VRSALKKQFEIIFIDEFQDTDPVQ 376 Query: 193 WEVIRSLTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 E++ L E+ + P LF VGD KQSIY F GA+ + K Sbjct: 377 GELLLFLAEEEKSAAKVWNEIKLAPGKLFVVGDPKQSIYRFRGADITAYQLFTELILK-- 434 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVD-KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 Q I L +FRS A I+ V+ F + E G + + Sbjct: 435 ----QGGMICYLQTNFRSDAQIIDFVNCAGFKLIEERPGFQAKYVPINAKDGAPCDK--- 487 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + ++ S + A A I+ Sbjct: 488 ---------------DAVKDVIISSEQPQSADDYRHNQAEFTAKWIAE---NAGKLKLSN 529 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 V+Q KDI VL+R + T + Y + + I D++ L Sbjct: 530 GSVLQYKDIAVLMRTSNAFNIFTEALK----RYGVKYTVEEDKNFYTAQEITDILNLLSL 585 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 + + D + +L+SP F++D+I++I Q+ + K G + K Sbjct: 586 LDNPYDKNALAGVLRSPFGGFNDDEIYQIFKQKFTDIS-----AKKLPKGFERLGGFYKT 640 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546 ++ L S IL + + ++ G + I L +F ++ + +S Sbjct: 641 LNTLKGFVGRISTGALVEKILSSTMFAELSQLAYNGEQTISNLQKFAALAAGDQNENANS 700 Query: 547 LQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + ++ + + V +MT+H +KGLE PVVFL D Q + Sbjct: 701 LGQFLANSKDLARQARGEGESPLADEFLSAVSVMTIHKSKGLEFPVVFLADMFRQESVKQ 760 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ P + ++ L ++ E R+LYV +TRA ++ Sbjct: 761 NKYSYSWFYDMHGLRAGPY-------ADANLAFLEVQQLWHSKSEEARILYVALTRAKEK 813 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L I ++ + + + + + E + A + N Sbjct: 814 LFILGNNTETKKTPARHLRNAGLWPELVTVKELPNDKLTHPLQLEYFPYAEPDQFIYKIN 873 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781 E +K + K + E ++PS+++ K S + Sbjct: 874 FTPEDGGVLKNAGEWFNRWAKRSEIYEKIKEEALFISPSSLN---KHEAVFAGSSDNAAL 930 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841 G + HK+L+ + S + + ++ ++ N ++ Sbjct: 931 LGTLCHKMLENYDFKTVITPEQTAASAASLQIEDND------IIKEAAEIINNFTVSEVC 984 Query: 842 SC-DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900 S ++ ++ IISG +D I + IF+ +YKT P + Sbjct: 985 KKLASMRVLAREMPFTYFEEGKIISGTVDVIVEQEGEIFVLDYKTDKTPD------PSKY 1038 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL Y++ +K N+ + L+++ +++II Sbjct: 1039 ALQLGAYKRAVKKIMGNEGVKSGLVFLRTSQLYII 1073 >gi|290580138|ref|YP_003484530.1| putative exonuclease [Streptococcus mutans NN2025] gi|254997037|dbj|BAH87638.1| putative exonuclease [Streptococcus mutans NN2025] Length = 1212 Score = 341 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 168/1003 (16%), Positives = 323/1003 (32%), Gaps = 132/1003 (13%) Query: 22 PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL--SSFFLTQKFT 79 L V+D+ Y G PT + L+ Q Q F L Sbjct: 251 ALALRDVTDLEDYKQ-VTAKGTPTA-AYQRHLKMIEQLQDWVLHFDNLYGRDGLGKLAND 308 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT----LAKYLNA 135 I + + + ++ +K +L L A + Sbjct: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFALDFSK 368 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y +AK + +F D+ +L++ D IR + + +++DE QD + Q + Sbjct: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDKYHEVMVDEYQDNNHTQERM 425 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 + L S+ R F VGD KQSIY F A+P+ ++ + Q+ + Sbjct: 426 LELL-----------SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEH----G 470 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 +I L +FRS +++L + VF+ + + D T + SS + Sbjct: 471 KLILLKENFRSQSEVLDATNSVFTHLMDETVGEILYDDTHQLVAGSSAQKIPYPQNETQV 530 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 ++ Q N + + +A I + + +Q Sbjct: 531 LIYDTKDQQNQDLAV------EDDSNQISLGEVKLVAKEIIRLHNEE---------KVQF 575 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQE 432 +DI +LV R +DY I V + + ++ R I + Sbjct: 576 EDITLLVSSRTR----NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL 631 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQR---HETETVYEYIQKFANCGIS---------- 479 +D + V +L+SP+F F EDD+ ++ Q + +YE ++ N Sbjct: 632 NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALS 691 Query: 480 -KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537 K + + S +D I K S + L Sbjct: 692 AKLDAFFETFLSWRKFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRAD 751 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDT 593 E+ + L I +++ N V +MT+H +KGLE VF+++ Sbjct: 752 NFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNI 811 Query: 594 GSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKS 642 + + + + I + + L+ + Sbjct: 812 DKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPIVKVSMDTLPYQLNKRELRLA 871 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS-------------------NQRTWYD 683 T E RLLYV MTR+ +L + + + W Sbjct: 872 TLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLL 931 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEW----IAYEWSTHHPENTPLEREETIKQLMDEQKI 739 + ++ DE K + E + E + + + I + +D + Sbjct: 932 AIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDIARALDMLEA 991 Query: 740 PKKLFSPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSDN 777 +KL K I+ P + PS I K + S + Sbjct: 992 VEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAGQ 1051 Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837 G +H+L+Q + + ++ +T+ + + K + + I + + Sbjct: 1052 DPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQ--VDKILHFFQTSQL 1109 Query: 838 TTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 + ++ Y E + +D ++ G ID + I +F+YKT + Sbjct: 1110 GKLIQANADKVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQ 1169 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I + Q+++Y + L SY + + LI + K+ ++ Sbjct: 1170 --AIKERYQGQMTLYAQALSQSYNIQQVDSYLILLGGEKLEVV 1210 >gi|15671986|ref|NP_266160.1| ATP-dependent exonuclease subunit a [Lactococcus lactis subsp. lactis Il1403] gi|81538647|sp|Q9CJI9|ADDA_LACLA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|12722839|gb|AAK04102.1|AE006239_4 subunit A of ATP-dependent exonuclease [Lactococcus lactis subsp. lactis Il1403] Length = 1203 Score = 341 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 172/1043 (16%), Positives = 315/1043 (30%), Gaps = 152/1043 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54 G +S + D + + + S+ G IL L Sbjct: 207 GFETYKSLIDLSADFSADIKENLLIFFELLETSLTNGVVAKKGAGRDKANLILDNKNELL 266 Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112 +A T+ L S + K+ I + K K+ L S+ + +IR Sbjct: 267 EAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSVQKQDLVGSKSKPGEIRKFV 326 Query: 113 ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + F+ Y E KK ++ D+ ++L++ Sbjct: 327 DKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEEN 386 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 IR + + + I+IDE QDTS Q ++ L S+ LF VGD K Sbjct: 387 PD---IRETLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F A+P L + + K +I L +FRS ++LT + +F + Sbjct: 433 QSIYGFRLADPGLFLEKYKDYAK----TENPNQLIRLKENFRSRGEVLTFTNDIFKHLMD 488 Query: 284 AQGLSEDSTTTIRHRSSRIGQ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + I + +++ ++ + + + + Sbjct: 489 EKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETD--------ESEVR 540 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 + + A I +I ++ KDI +LVR + + I + Y Sbjct: 541 ISDGEIKGAAQEIKKLIEAG----------VEPKDIAILVRSKSNNNKIEDIL----LSY 586 Query: 401 KISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 I VV R + + ++ + R I + DLS V ML+SPLF F+ED++ +I TQ Sbjct: 587 DIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISTQ 646 Query: 460 RHETETVYEY-----------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 ++ + +K + K E + + HD I Sbjct: 647 GSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKIY 706 Query: 509 GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKR 563 + + G L E + Y L + + +EQ Sbjct: 707 TETYYFDYVGALKNGEIRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASV 766 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + VR+MT H +KGLE VFL++ S+ + + + + + Sbjct: 767 NIKLPQSAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKENVILSRENGLGMKLIADLK 826 Query: 624 QS------------KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 K +++ E R+LYV TRA +L + + Sbjct: 827 DEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKET 886 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA-------------------- 711 ++K + D+ + A Sbjct: 887 DKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPIKLNVYTKEELEAEKL 946 Query: 712 -----YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID--- 763 ++ E+ + + + + P + I PS + Sbjct: 947 EFTSQPDFKKLVEESEKFDNIMAHSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRS 1006 Query: 764 ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 K + G H +Q + + Sbjct: 1007 YEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTAAEIGSATHSFMQYADFS----QADLF 1062 Query: 806 TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKK 860 + T + + K + + I L + + E S K+ Sbjct: 1063 SFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFAKE 1122 Query: 861 DIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 I+ G D I +F+YKT I I + Q+++Y + LK +Y Sbjct: 1123 QYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQ 1182 Query: 920 LVCLLIYVSEPKVFIIPQNKLNK 942 + LI + P+ + KL+ Sbjct: 1183 VDKYLILLGGPQQVFV--EKLDD 1203 >gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159] gi|81588281|sp|Q8DT76|ADDA_STRMU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159] Length = 1212 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 167/1003 (16%), Positives = 323/1003 (32%), Gaps = 132/1003 (13%) Query: 22 PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL--SSFFLTQKFT 79 L V+D+ Y G PT + L+ Q Q F L Sbjct: 251 ALALRDVTDLEDYKQ-VTAKGTPTA-AYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLAND 308 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNA 135 I + + + ++ +K +L L + + + Sbjct: 309 IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y +AK + +F D+ +L++ D IR + + +++DE QD + Q + Sbjct: 369 QYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDKYHEVMVDEYQDNNHTQERM 425 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 + L S+ R F VGD KQSIY F A+P+ ++ + Q+ + Sbjct: 426 LELL-----------SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEH----G 470 Query: 256 SIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 +I L +FRS +++L + VF+ E + D T + SS + Sbjct: 471 KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQV 530 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 ++ Q N + + +A I + + +Q Sbjct: 531 LIYDTKDQQNQDLAV------EDDSNQISLGEVKLVAKEIIRLHNEE---------KVQF 575 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQE 432 +DI +LV R +DY I V + + ++ R I + Sbjct: 576 EDITLLVSSRTR----NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL 631 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQR---HETETVYEYIQKFANCGIS---------- 479 +D + V +L+SP+F F EDD+ ++ Q + +YE ++ N Sbjct: 632 NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALS 691 Query: 480 -KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537 K + + S +D I K S + L Sbjct: 692 AKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRAD 751 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDT 593 E+ + L I +++ N V +MT+H +KGLE VF+++ Sbjct: 752 NFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNI 811 Query: 594 GSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKS 642 + + + + + + L+ + Sbjct: 812 DKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLA 871 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS-------------------NQRTWYD 683 T E RLLYV MTR+ +L + + + W Sbjct: 872 TLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLL 931 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEW----IAYEWSTHHPENTPLEREETIKQLMDEQKI 739 + ++ DE K + E + E + + + I + +D + Sbjct: 932 AIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEA 991 Query: 740 PKKLFSPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSDN 777 +KL K I+ P + PS I K + S + Sbjct: 992 VEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQ 1051 Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837 G +H+L+Q + + ++ +T+ + + K + + I + + Sbjct: 1052 DPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQ--VDKILHFFQTSQL 1109 Query: 838 TTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 + ++ Y E + +D ++ G ID + I +F+YKT + Sbjct: 1110 GKLIQANADKVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQ 1169 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I + Q+++Y + L SY + + LI + K+ ++ Sbjct: 1170 --AIKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGEKLEVV 1210 >gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus HTA426] gi|81558057|sp|Q5L263|ADDA_GEOKA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|56379059|dbj|BAD74967.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus HTA426] Length = 1242 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 153/1040 (14%), Positives = 328/1040 (31%), Gaps = 144/1040 (13%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 I + I + + L+ E G P L+ + E Sbjct: 226 IAQHAAMELAAARRLIRRALELAEEPGGPRPYAERLREDRDMITDLETRL-SGPWAELHR 284 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS- 122 L + + + + + ++ L+++ ++ +D + M + Sbjct: 285 ALKALSFGRLPACRGKDYDERLIDEAKSLRDQAKKKVEALRDNVFSLDPSVWLRHMREMK 344 Query: 123 --TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDVSAW----IRYKID 174 L + ++ AK++ ++DF DL +L+ + W + Sbjct: 345 PIVETIANLVRRFAVMFQAAKREKGIVDFSDLEHYCLHILRRRDPETGEWQPSPAALEYQ 404 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + + +L+DE QDT+L+Q +++ + K LF VGD KQSIY F AEP Sbjct: 405 AQFDEVLVDEYQDTNLVQEAILQLV-------KKGSERTGNLFMVGDVKQSIYRFRLAEP 457 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292 L + + G K I+L +FRS ++L + +F+ + D Sbjct: 458 MLFLDKYKRFTADGEEGGMK---IDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEA 514 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 +++ + + + +Q + + + +A + AR +A Sbjct: 515 AQLKYGADYPEG---------EDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKK 565 Query: 353 ISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I ++ + G+ R +DI++LVR + P + + I + Sbjct: 566 IKEIVSAPFYVYDRSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQA----QGIPAAADLS 621 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468 I +++L + I + D+ +L+SPLF F E+++ I + Sbjct: 622 SGYFQATEISIMLSLLKVIDNPHQDIPLAAVLRSPLFRFDENELAMIRLADPKGTFYEAL 681 Query: 469 -------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520 K K ++ + +A+ S D + + + Sbjct: 682 CSFRQKPAETKEEANAQRKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALP 741 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575 G + L + + E S+ L + +E+ R + VRIM Sbjct: 742 GGRQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIM 801 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H++KGLE P+VFL + + L + + + Sbjct: 802 TIHSSKGLEFPIVFLAGLARPFHTRDLHHPYLLDKELGFAARFVHPRLRISYPTLPLLAI 861 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KS 676 + E R+LYV +TRA ++L + N + ++ ++ Sbjct: 862 QTKKRLELLAEEMRILYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRA 921 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD- 735 + R++ D + + + T + + W L E ++ MD Sbjct: 922 SARSYLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLRGAEAAREEMDG 981 Query: 736 ------------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 ++++ ++L + S + K + L +D Sbjct: 982 GVLLALEQGRPVPVEGGWQKEVKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADE 1041 Query: 778 ----------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 +G +H +++ + + K Sbjct: 1042 WRPRQGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPLDESWIRSQIVRLVEKE 1101 Query: 816 WPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKINCP----------KKDI 862 + E + +I + + + EV S + + + Sbjct: 1102 LLSAEQAEAVDPAAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESGRRV 1161 Query: 863 IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEHIPY----THIAQLSIYEKILKDSY 915 ++ G ID + + + +YKT H + E + Q+ +Y + ++ + Sbjct: 1162 LVQGVIDCVFADECGYVMIDYKTDEVVHRFAGQKEEAARFLLGRYGTQMRLYRRAIEQIW 1221 Query: 916 PNKSLVCLLIYVSEPKVFII 935 C L V + Sbjct: 1222 RAPVAECYLYSFDGGFVVAV 1241 >gi|57239354|ref|YP_180490.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58579320|ref|YP_197532.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|57161433|emb|CAH58357.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58417946|emb|CAI27150.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 857 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 188/647 (29%), Positives = 309/647 (47%), Gaps = 43/647 (6%) Query: 34 YVSLSMETGNPTILKKAQTLQQASQTQCIE--ERFSLLSSFFLTQKFTPQKNI---ITQE 88 ++ ++ G+ K + L + + + F+ +K+I IT++ Sbjct: 214 FLIKALSKGSTRDQKISNKLTAWMNLSEKYKIAKLNEYTKIFINSTSLEKKSISSIITKK 273 Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 P +++ + Q+E ++ + F K+ + T+ +AK Y++ K++ LD Sbjct: 274 TLNDFPQIEKIIIDIQEEVLEFTNTFYANKIAERTVHLTEIAKCFTKLYQQNKQRLNYLD 333 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 +D+I LL WI + +D +I+H+L+DE QD S+ QW++I L +DFF G Sbjct: 334 HDDVINLALKLLINPHYKDWILFHLDSKIDHVLVDESQDNSIKQWQIISELCQDFFTGIG 393 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 T +TLF VGD KQSIYSF A P +++ I+ L SFRSTA Sbjct: 394 TTEETKTLFIVGDIKQSIYSFQNARPDYFKPMCNYFAQKSNQY----KILYLKQSFRSTA 449 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 IL +VDK+F+ + T I H R G +++W ++++ + + Sbjct: 450 PILKLVDKIFNNFRQEISFT---TEAIHHEIFRKHDPGYLEIWPIFHTENN------KYN 500 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + D ++ +LA IA I I I K+R I A DIL+LVR R T Sbjct: 501 FLENTDHKITPNTNLLLASTIANKIHTWIKNQRILP-AKQRTISAGDILILVRHR--TSF 557 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 I + LK I + D+F + D + I+DL+ LG F+L E+DL+ +LKSP+F F Sbjct: 558 IDHMITELK-KLNIPTLERDKFKVMDSIIIQDLVNLGEFLLLPENDLALAGLLKSPIFEF 616 Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 +E+ IF + R ++E +Q KF ++ Y+ +LI+I+Q +P D + I+ Sbjct: 617 TEEQIFNLAYNR-NNLHLWEVLQ-------LKFSYISDYLKQLINISQTHNPLDTYNYII 668 Query: 509 GAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567 K +FI R G +++ EF+N ++ E + +SLQ I ++ P IK + Sbjct: 669 SQHKH--KFIKRLGQSNIEEIIGEFINLLIKFELDHINSLQAFIHWIKNTNPEIKSDINH 726 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 N ++IMT+H AKG++SP+VFL DT + + + + D P W Sbjct: 727 TKNYIKIMTIHNAKGMQSPIVFLTDTTTIPKN--------DLQLIFDTENTPFWC--RND 776 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 ++ L K + EY RLLYV MTRA D+L I ++ Sbjct: 777 THDFCEKLKTQQKINEYNEYLRLLYVAMTRAEDELYITGTPPIQSKS 823 >gi|209559149|ref|YP_002285621.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes NZ131] gi|251764566|sp|B5XKR4|ADDA_STRPZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|209540350|gb|ACI60926.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes NZ131] Length = 1222 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 159/1025 (15%), Positives = 325/1025 (31%), Gaps = 139/1025 (13%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + EL+ + + + K + L + Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117 F L + + + D+ K + + R Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + Y K + +F D+ +L++ IR Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 Q + +++DE QD + +Q ++ L S+ F VGD KQSIY F A+ Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 P+ ++ R QK+ +I L +FRS +++L V + VFS + D Sbjct: 466 PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +H+ TV ++ + ++ + DS S + +A I Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412 + + + +DI +LV R + N Y I +V + Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469 + + ++ R I + +D + V +L+SP+F F EDD+ +I Q+ + +Y+ Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681 Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 IQ+ + + K +K + A+ S +D + Sbjct: 682 IQRAVIGRGAYPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLILENFHERFYFDFVA 741 Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573 S+ + L + E++ Y L I LE + V Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVN 801 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622 +MT+H +KGL+ P VF+++ + K + + Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679 + + L+ +T E RLLYV MTRA ++ ++ S ++ Sbjct: 862 VKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921 Query: 680 ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719 W + D F ++ ++ + + T Sbjct: 922 GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + + ETI + +D + +L + + I+ P + PS + + Sbjct: 982 DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 S + + + G +H+L+QV+ ++ + + + Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099 Query: 818 AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872 + L I + + Y E + +++ ++ G ID Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930 + +I + +YKT + ++ + + QL +Y + L +Y L+ + Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217 Query: 931 KVFII 935 ++ + Sbjct: 1218 EIVEV 1222 >gi|319947223|ref|ZP_08021457.1| exonuclease RexA [Streptococcus australis ATCC 700641] gi|319747271|gb|EFV99530.1| exonuclease RexA [Streptococcus australis ATCC 700641] Length = 1227 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 164/1023 (16%), Positives = 340/1023 (33%), Gaps = 132/1023 (12%) Query: 8 SLNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 +L++ + + + L+ L F + N+ + S + + ++ E F Sbjct: 235 ALDQLAQEVKEQLFELESFFTFHLANEGQAFSGAKYQENVTAIQDLIAGLNEQSSQEAIF 294 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTY-------K 118 +L L + + +++ + +L + + +R + + + Sbjct: 295 EVLERVVLISRASGGRSLTITTRKEDLKELATAFNDERKERIEALRAAASQHYQLTYQFR 354 Query: 119 MFKSTLASLTLAKYLNAH----YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 L L L + Y E KK+ +F D+ +L++ IR Sbjct: 355 FKDEPLPLLVLLRDFVQAFSIAYLERKKQENAFEFGDISHFAIQILEEFPH---IRKLYQ 411 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + + +++DE QDT+ Q ++ L S+ R F VGD KQSIY F A+P Sbjct: 412 ERYHEVMVDEYQDTNHTQERMLELL-----------SNGRNRFMVGDIKQSIYRFRQADP 460 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + + + Q+ G +I L +FRS ++L + VF + + + Sbjct: 461 QIFNDKFKAYQEE----GADGKLILLKENFRSHVEVLEATNHVFERLMDEEVGEILYDQS 516 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 R + G + ++ Q+ T + +S +S + I Sbjct: 517 HRLIA---GNPEKKEPTPAYETEFLLYDGSQEVDETGEDEEQEGDSLSSGEVLFVIKEII 573 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILT 413 + + + KD+ +L R + Y+I +V + Sbjct: 574 RLHNEE---------GVPFKDMTLLTASRTRNDKVLSAFEA----YQIPIVADGGEENYL 620 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473 + + L+ R I + D V ++KS +F F ED + ++ QR E + +K Sbjct: 621 QSVEVMVLLDTLRTINNPLQDYPLVALMKSAMFEFDEDQLARLALQRGEGKKAENLYEKL 680 Query: 474 ANC--------------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + K ++ + AQ S +D I + + Sbjct: 681 QHALDQTGSAPQLIDASLRDKLTRFMETLDAWRDYAQTHSLYDLLWKIYQDRHYYDYVGA 740 Query: 520 -RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRI 574 G + L E +S+ L IS +++ A + + V++ Sbjct: 741 LPNGAQRQANLYALTLRANDFESSSFKGLPRFISMIDKILENQHDLANVAQAVPKDAVQL 800 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H +KGLE P VF+++T + + I +P + + Sbjct: 801 MTIHKSKGLEFPYVFILNTDKKFVGKELSTNAVISRKNGVGIKYIANLPVESDQEGLPEA 860 Query: 635 LI------------KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---- 678 + + ++ + E RLLYV MTRA +L + ++ Sbjct: 861 VRLVIETLPYQRNVEEIRLAALSEQMRLLYVAMTRAERKLYLVGKGRQDKLEEKKWGASV 920 Query: 679 ------------RTWYDMVY-----DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + D +Y + + + + ++ E T P + Sbjct: 921 NGRLSPALRKEINCFQDWLYAIQAVFAQQHLAYQTRFVTDQDLTPEQIGHLEVKTSLPVD 980 Query: 722 T--PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768 + E I++ +D + +L + + I P + PS I + Sbjct: 981 DLKDNRQSEEIRRALDVLESVDRLNTQYQAAIQLPSVRTPSQIKKFYEPIQDIEGVDLME 1040 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 G +H+L+Q I ++ NA Sbjct: 1041 KGDLALPSFEFPKFGKEEAVTGATVGSALHELMQRIPLTTIPTMESLAMVLQEVNASPAV 1100 Query: 818 AKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISI 873 + L + + + + + + E + +D ++ G +D + Sbjct: 1101 KERID--LKKVLAFFQTDLGQLLLKEADKVHREAPFAMLKTDPTSGQDFVVRGILDGYLL 1158 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + I +F+YKT + + + + + AQL +Y + L+ SY L LI + ++ Sbjct: 1159 LEDRILLFDYKTDRY--RNPQDLLDRYHAQLELYAEALRRSYGVDRLESYLILLGGEQLQ 1216 Query: 934 IIP 936 ++ Sbjct: 1217 VVS 1219 >gi|327461179|gb|EGF07512.1| exonuclease RexA [Streptococcus sanguinis SK1057] Length = 1224 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 157/1033 (15%), Positives = 329/1033 (31%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L ++ Sbjct: 228 HSDFAAERERIFGQIKSALWELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNELS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 PIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L+ Sbjct: 348 LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRRFYQERYHEVMVDEYQDTNHTQECMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPAKREP-------NPANCASFLIYEGSKESPEEEGDEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L ++I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672 Query: 465 TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +K K QH + + ++ S +D I Sbjct: 673 SQENLYEKLLNALEGRGLNPTLVTQKLQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTNGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEVL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + SN + W + F ++ + + + Sbjct: 913 DKRQWGKSQQGRLSVSLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTVEEIGQI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762 + + + + I++ +D + +L S ++ I P + PS I Sbjct: 973 NEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 763 ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + + + G +H+L+Q I + Sbjct: 1033 DTDGLDIMDERAAFRPQSSFELPDFGRKATVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + + ++ Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDASGQEF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT + + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYRGQLDLYAQALSRSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVV 1221 >gi|315221764|ref|ZP_07863678.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211] gi|315189150|gb|EFU22851.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211] Length = 1237 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 166/1036 (16%), Positives = 330/1036 (31%), Gaps = 142/1036 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I + L+ L F + N+ + L Sbjct: 239 RADFQEEKAQLLAQIKEALYDLEDFFHYHLANEAKEFPKAKYLENVQSVLDCLASLQGQS 298 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-----------EKLKKSQDEFIK 109 E + L + + K + ++ ++ + L+ D+F + Sbjct: 299 SEEAYVTALDRIVEISRASNGKALTNSGRKEELKEIINTYNEKRKEKIQVLRDLADQFYR 358 Query: 110 IRDRFNTYKMF-KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + ++ + L K Y KK+ +F D+ +L++ Sbjct: 359 FEFQVTYHEEAKEILLVLQRFMKAFVESYLNRKKEENAFEFADVSHFAIQILEEFPD--- 415 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 +R+ + + +++DE QDT+ Q ++ L S+ F VGD KQSIY Sbjct: 416 VRHFYRNKYHEVMVDEYQDTNHTQERMLELL-----------SNGHNRFMVGDIKQSIYR 464 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F A+P+ + ++ Q Q+ +I L +FRS ++L + VF + + Sbjct: 465 FRQADPQIFNDKFKLYQDD----SQQGKLIVLKENFRSHVEVLEATNDVFKRLMDEEVGE 520 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 D T + + ++ +D E S+ A Sbjct: 521 IDYNETHYLVAGNPDKKEPNPQYQTEFLIYDGTLETNNEENDKDVSSVSAGEVA-----L 575 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + +Q +DI +L R + Y I VV + Sbjct: 576 VIKEIIRLHNEE---------NVQFEDITLLTASRT----RNDMILAEFAKYGIPVVSDG 622 Query: 409 R-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 + + ++ R I + +D + V +LKSP+F F+ED++ ++ Q+ TE + Sbjct: 623 GEDNYLQSVEVMVMLDTLRTINNPLNDYALVALLKSPMFTFTEDELARLALQKKVTEANH 682 Query: 468 -------------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 ++ + + K Q + + + A+ S +D I Sbjct: 683 VVHQENLYEKLKNALSGHGQHPELITPPILKKIQQFQEILLDWREFAKINSLYDLLWKIY 742 Query: 509 GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKR 563 + + G L E+ S+ L I LE Sbjct: 743 QDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRFIGMIDKILETQNDLASV 802 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------- 615 +A + VR+MTVH +KGLE VFL++T + + Sbjct: 803 VVAAPKHAVRLMTVHKSKGLEFKYVFLLNTDKAFNRKDSSSALILSRQNGVGIKYVADVA 862 Query: 616 ----PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + + + + ++ E RLLYV MTRA +L + Sbjct: 863 VDVTDKLAPNHVRLSIDTLPYVQNEREIHLASISEQMRLLYVAMTRAERKLYLVGKGRQE 922 Query: 672 NEKKSNQRT-------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 + +K W + F ND+ + + Sbjct: 923 SLEKKTFPAPENGRLAASIRRTMTSFQDWIWALQTVFKNDDLTFSTRFVTDSDLTSEKIG 982 Query: 713 E----WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------ 762 + + E I++ +D + +L + + I+ P + PS I Sbjct: 983 QLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEP 1042 Query: 763 -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 T + + + G +H+L+Q I Sbjct: 1043 VMDTDGVEIMEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAVHELMQRIPLNQLPTI-- 1100 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPK 859 I + + K L I E + + + Y E + + Sbjct: 1101 AILKEILAQVQAEETVKKKIDLQKIASFFETELGQLLLKQADKVYREAPFAMLKQDQASG 1160 Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 ++ ++ G +D + I +F+YKT + + + AQLS+Y + L+ SY + Sbjct: 1161 QNFVVRGILDGYLLLDDRIVLFDYKTDQYT--NPSELVERYQAQLSLYAEALRRSYGIEK 1218 Query: 920 LVCLLIYVSEPKVFII 935 + L+ + ++ ++ Sbjct: 1219 IEKYLVLLGGVQLQVV 1234 >gi|58617374|ref|YP_196573.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Gardel] gi|58416986|emb|CAI28099.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Gardel] Length = 857 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 187/647 (28%), Positives = 306/647 (47%), Gaps = 43/647 (6%) Query: 34 YVSLSMETGNPTILKKAQTLQQASQTQCIE--ERFSLLSSFFLTQKFTPQKNI---ITQE 88 ++ ++ G+ K + L + + + F+ +K+I IT++ Sbjct: 214 FLIKALSKGSTRDQKISNKLTAWMNLSEKYKIAKLNEYTKIFINSTSLEKKSISSIITKK 273 Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 P +++ + Q+E ++ + F K+ + T+ + K Y++ K++ LD Sbjct: 274 TLNDFPQIEKIIIDIQEEVLEFTNTFYANKIAERTVHLTEITKCFTKLYQQNKQRLNYLD 333 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 +D+I LL WI + +D +I+H+L+DE QD S+ QW++I L +DFF G Sbjct: 334 HDDVINLALKLLINPHYKDWILFHLDSKIDHVLVDESQDNSIKQWQIISELCQDFFTGIG 393 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 T +TLF VGD KQSIYSF A P +++ I+ L SFRSTA Sbjct: 394 TTEETKTLFIVGDIKQSIYSFQNARPDYFKPMCNYFAQKSNQY----KILYLKQSFRSTA 449 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 IL +VDK+F+ + T I H R G +++W ++++ + + Sbjct: 450 PILKLVDKIFNNFRQEISFT---TEAIHHEIFRKHDPGYLEIWPIFHTENN------KYN 500 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + D + +LA IA I I I K+R I A DIL+LVR R T Sbjct: 501 FLENIDHKITPDTNLLLASTIANKIHTWIKNQRILP-AKQRTISAGDILILVRHR--TSF 557 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 I + LK I + D+F + D + I+DL+ LG F+L E+DL+ +LKSP+F F Sbjct: 558 IDHMITELK-KLNIPTLERDKFKVMDSIIIQDLVNLGEFLLLPENDLALAGLLKSPIFEF 616 Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 +E+ IF + R ++E +Q KF ++ Y+ +LI+I+Q +P D + I+ Sbjct: 617 TEEQIFNLAYNR-NNLHLWEVLQ-------LKFSYISDYLKQLINISQTHNPLDTYNYII 668 Query: 509 GAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567 K +FI R G +++ EF+N ++ E + +SLQ I ++ P IK + Sbjct: 669 SQHKH--KFIKRLGQSNIEEIIGEFINLLIKFELDHINSLQAFIHWIKNTNPEIKSDINH 726 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 N ++IMT+H AKG++SP+VFL DT + + + D P W Sbjct: 727 TKNYIKIMTIHNAKGMQSPIVFLTDTTTIPK--------SDLQLIFDTENTPFWC--RND 776 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 ++ L K + EY RLLYV MTRA D+L I ++ Sbjct: 777 THDFCEKLKTQQKINEYNEYLRLLYVAMTRAEDELYITGTPPIQSKS 823 >gi|194467461|ref|ZP_03073448.1| recombination helicase AddA [Lactobacillus reuteri 100-23] gi|194454497|gb|EDX43394.1| recombination helicase AddA [Lactobacillus reuteri 100-23] Length = 1392 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 157/1071 (14%), Positives = 310/1071 (28%), Gaps = 167/1071 (15%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 ++ E + + + Q L Q Sbjct: 338 IAKEELLTELTTFRDQFTALLSKATESQLDAKTVDSLQKDQQMMQELLDLLQPPTWNTIR 397 Query: 67 SLLSSFFLTQKFTPQKN-----IITQEINKKSPDLKEKLKKSQDEFIKIRD---RFNTYK 118 L ++ + K+ + + + +K++ + D F R+ R + Sbjct: 398 DLFANAKFARMGGKPKDDELAEEVYKSLGSARTGIKKQFDQLVDRFFNYREDQFRLISTH 457 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR---YKIDQ 175 + + Y++ K VL+F DL +L D + + Sbjct: 458 AQELLRELSAVTINFRRRYQQTKLNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQN 517 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+IDE QDT+ +Q ++ LT + LF VGD KQSIY F A+P Sbjct: 518 HYQEIMIDEYQDTNRLQESILMKLTS---------PERKNLFMVGDVKQSIYRFREADPT 568 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293 L + + ++ G I L +FRS ++ + + +F + + D Sbjct: 569 LFLGKYQNYRQ-----GNDGEAIVLGENFRSMTNVTSFTNILFEQLMDREVGEIDYDEDA 623 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +++ ++ + ++ V +D+ ++ D ++ + R I I Sbjct: 624 HLKYAATYYEENQANKVQPTEVLLYDANALDPEK-----EDIEHEDDKLAGEFRMIGMRI 678 Query: 354 SNMIGTDTI---FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + +G+ IQ DI++L R + I N I + +D Sbjct: 679 KQMVENQELIFHPEDGQMHPIQYGDIVLLERTKA----INNSLMEEFNKLNIPLTVHDVE 734 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 ++ +M+L + I + + D+ +L+SP+ + ++ I Q + Sbjct: 735 SYFQATEVRVMMSLLKIIDNPQQDIPLAAVLRSPIVGLTNQELAFIRLQNRSVDYYAALQ 794 Query: 471 QKFANCGISKFQH------------------VIKYIHELIHIAQFCSPHDFFTLILGAKK 512 N +H + + AQ + D I Sbjct: 795 SFMGNYQRKALRHQSLLTSEQVSALYEKADHFLGLLRVFRQTAQQQTLVDLIWQIYDQTG 854 Query: 513 GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--- 568 G++ L EQ+S+ L + I +E+ K A Sbjct: 855 YLDYVGAMPGGHQRQANLHALYQRAHSYEQSSFKGLYQFIRFIEKMQEHDKDLGVAPTQL 914 Query: 569 -HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 N V +MT+H +KGL+ PVVFL+D + + + Sbjct: 915 TANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAARENAVVDAAAGVGIRYMDDQRVIYD 974 Query: 628 RN---NIVSDLIKHLKKSTQE--------------------EYNRLLYVGMTRAS-DQLI 663 ++ ++ + + E R + + + Sbjct: 975 TPQRQAVIEEIQRGERAEDLRVLYVALTRAEQRLVITGSFNEEMRTQSLAGSWQRWQKAY 1034 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDER-----------------VKKIKLTNSINK 706 K+ + + ++ D V + + K+T Sbjct: 1035 QSKNLLIGPQPRITANSFMDWVGLALARYPEFNAQQLSRGNVTLEESTLADTKITGLAAD 1094 Query: 707 DEWIAYEWSTHH-----------PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 +IA ++ E+ T+ EQKI + L + + Sbjct: 1095 PHFIAKTYTALDVSDGLAKIGQNASANVTEKNNTVATDASEQKIEQILRYRYPHLVATKT 1154 Query: 756 ILNPSTIDTKGKTNLESLLS----------------------------------DNQTFN 781 S D K + Sbjct: 1155 TAYQSVTDVKRVFEDPDTRDMARWDYDQQQKVKTQGIYLNNNFDVPAFIQQTTHEPVATE 1214 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLS-ITRLLENPMMT 838 G H + Q + F+ K KL + I + + Sbjct: 1215 IGTATHLVFQKLPLDEGLINVEFVDQEIQKLVGEKLINPVVAARINREGIVAFYQTAVGQ 1274 Query: 839 TAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEYKTH 886 + D + EV S +N + I+I G ID + + I + +YKT Sbjct: 1275 KILKHPADYHREVPFSMIMNGHELFKGVNVSDDERILIHGIIDGYLRTDEGIILVDYKTD 1334 Query: 887 HHVPQ----EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 H ++ I + QL +Y++ L + L + + Sbjct: 1335 HLNKDYRNFDLARIKDRYRGQLELYKEALNLMEGIPVVQMGLYLLELGEFV 1385 >gi|322516094|ref|ZP_08069031.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124] gi|322125509|gb|EFX96855.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124] Length = 1217 Score = 339 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 154/1021 (15%), Positives = 331/1021 (32%), Gaps = 143/1021 (14%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L++ GL+ E +S + ++ + L + T Sbjct: 254 LRDHLGLAQREFA---KAKYLNNVSDAISLLEGALA--------NDQTDMEDLLKQLLTL 302 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + + T+ + + NK + +L++ + + Sbjct: 303 SGGTGLTNM-----TRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357 Query: 121 KSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L L + Y +AK + +F D+ +L++ + + Sbjct: 358 LPLLELLQSFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPE---VAASYRDRYHE 414 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QD S Q ++ L S+ F VGD KQSIY F A+P+ Sbjct: 415 VMVDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNG 463 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + ++ + +I L +FRS +++L + VFS + + T + Sbjct: 464 KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 Q +Q + E+ + + + +S + I + Sbjct: 520 -----GSEKQREPHPENQTEVLIYNSDEANVTPDEESADQPISSGEISLVIKEIIKLHEQ 574 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAI 418 ++ +DI +L R ++ I +V ++ + + L + Sbjct: 575 G----------VRFEDITLLAPTRNTYLD----LMASFEEHGIPLVPDEYKSSYLESLEV 620 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG- 477 ++ R I + +D + V +L+SP+FNF+EDD+ +I Q + + + + G Sbjct: 621 MIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKSGL 680 Query: 478 ---------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVID 527 +K +I+ + + +++ S +D I + S + Sbjct: 681 HPEVVTQGLETKLTLLIETLSDWRDYSKWHSLYDLIWKIYDDRFYYDYVGSLPRAEQRQA 740 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTVHTAKGL 583 L E+ + L I ++ + A N V +MT+H +KGL Sbjct: 741 NLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVADLVPKNAVSLMTIHKSKGL 800 Query: 584 ESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKSRNN 630 E VF++ + H + + L D + Sbjct: 801 EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETL 860 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS------------------- 671 + + ++++ E RLLYV MTRA +L + + Sbjct: 861 TFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVAL 920 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI----AYEWSTHHPENTPLERE 727 ++ + + W + +F + ++ + + + + + + Sbjct: 921 RDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELIPEAIGQVEVQAAVDADDLSNNRQT 980 Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-----------------NL 770 E IK+ + + KKL I+ P + PS + T + L Sbjct: 981 EEIKRALTVLESVKKLNQLYAPAIDLPSVRTPSQLKTFYEPVMDTEGVDIMDKKEEVQPL 1040 Query: 771 ESLLSDN----------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 E+ + G H+L+Q + ++ + + Sbjct: 1041 ETATTFELPDFGQKIKVTGAAVGSATHELMQRLILSDTVTLQDLTQAL--SRVSADDQVK 1098 Query: 821 YKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L + + + ++ E + + K+D ++ G ID + + Sbjct: 1099 ARVQLEKLLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLED 1158 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP--KVFI 934 I +F+YKT H + + + Q+S+Y K L +Y + LI + +V Sbjct: 1159 RIVLFDYKTDHFT--QPGELKERYKGQMSLYAKALSQAYQVDKIDKYLILLGGKNLEVVE 1216 Query: 935 I 935 + Sbjct: 1217 V 1217 >gi|226237522|dbj|BAH47270.1| ATP-dependent exonuclease/helicase subunit A [Streptococcus suis] Length = 1100 Score = 339 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 162/985 (16%), Positives = 323/985 (32%), Gaps = 131/985 (13%) Query: 42 GNPTILKKAQTLQQASQTQCIEERFSLLSSF--FLTQKFTPQKNIITQEINKKSPDLKE- 98 G+ + + ++ L+ L + +T K L Sbjct: 152 GSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPKDEHLIAF 211 Query: 99 -------------KLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 +L+ E ++ + + + + Y + K K Sbjct: 212 KEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKE 271 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 +F D+ +L++ A IR ++ + +++DE QD + Q ++ L Sbjct: 272 AAFEFGDIGHFAIRILEEN---ADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL----- 323 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 S+ F VGD KQSIY F A+P + + Q Q +I L +F Sbjct: 324 ------SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQ----ANPQSGKLILLKENF 373 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RS ++L + +F+ + Q T + GQ E +D Q Sbjct: 374 RSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQ--- 430 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 +S S D+ + + +A I + + KDI +LV+KR Sbjct: 431 --DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRT 479 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 L + + I +V + L + ++ R I + +D + V +LKS Sbjct: 480 H----NDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKS 535 Query: 444 PLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQ----HVIKYIHELIH 493 P+F F ED++ +I Q E + + K + + + Sbjct: 536 PMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRA 595 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 A+ S +D + K + G++ L + E+ Y L I+ Sbjct: 596 YAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIA 655 Query: 553 ELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF---------- 598 +++ K N V++MT+H +KGLE VFL++ + Sbjct: 656 MIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVII 715 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 S K+ + + + D P+ + + ++ LK + E RLLYV +TRA Sbjct: 716 SRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRA 775 Query: 659 SDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 +L + N + + T+ D + Sbjct: 776 EKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKV 835 Query: 703 SINKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + ++ + + + E I Q +D+ ++L K I P Sbjct: 836 FVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPS 895 Query: 756 ILNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIF 794 + PS I + S G +H+L+Q + Sbjct: 896 LRTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLD 955 Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS 852 + +A+ + + I + + ++ + E + Sbjct: 956 LSWLVTEDTVRAALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFA 1013 Query: 853 --GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 + +++ ++ G ID + +I +F+YKT + + + + AQ+ +Y + Sbjct: 1014 SLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPIQLSQRYQAQMQLYAEA 1071 Query: 911 LKDSYPNKSLVCLLIYVSEPKVFII 935 LK +Y + C LI + ++ ++ Sbjct: 1072 LKKAYKIDRVDCHLILLGGERIEVV 1096 >gi|227507848|ref|ZP_03937897.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192686|gb|EEI72753.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1254 Score = 339 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 143/1006 (14%), Positives = 303/1006 (30%), Gaps = 146/1006 (14%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 L+Q F ++ LT+ + + + + + +K++ +K + Sbjct: 273 DGLRQLITGFD----FESMTKAKLTKDADEYQKQVHKLVKGTNDQMKKQWQKLVTGYFAW 328 Query: 111 RDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-RDVS 166 ++ N +T+ + A Y++AK + ++ F D+ D+L + + Sbjct: 329 NEQDNVDLMNAAKARIEKLVTVVRTFRAAYKQAKARRHLMQFIDIEHAAYDILNDVSEQA 388 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 +R ++ + I+ DE QD + +Q ++ + S F VGD KQSI Sbjct: 389 KQVRQRLQDQYYEIMTDEYQDNNRLQDAILNKIA---------RSDRGNRFMVGDVKQSI 439 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-- 284 Y F A+P ++++ +I L +FRS +I + VF + Sbjct: 440 YRFRLADPTMFIKKQAQY----IEQDNDNELISLSENFRSAKNIDDFTNLVFEQTMDHQV 495 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 ++ + ++ ++ + S E + +S Sbjct: 496 GDIAYTGKSKLQFGATYYPDDMKADASLIIYRTKSSVAATSNEDLGAGDQIEDSDSGQ-- 553 Query: 345 LARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 A IA I ++ + + K R + DI ++ + + Y Sbjct: 554 -AEIIAQKIRTLVDDKQLIYDKKLEEMRPVTFGDIAIISPTHNN----ELTLSDIFTQYG 608 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 I I+ +M+L I + D++ V +L+SP+ E+ + + R+ Sbjct: 609 IPAEITGAKSYFKTTEIQIMMSLLSIIDNPFQDIALVAVLRSPIVGLDENQLAFLRINRN 668 Query: 462 ETETVYE-----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 +A K +K + +AQ I Sbjct: 669 TGNYYQAVLDFYRGFDRLEPNDYATRIYQKVDRFMKQLRRFKDVAQQDGLVSLIWDIYDQ 728 Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 G + L + E+N + L + + +++ Sbjct: 729 TGYLDYVGGMPAGLQRQTNLHALYDRAADYEKNGFKGLFQFVKFIQRMQERDNDLANANP 788 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + + N V +MT+H +KGL+ P+VFL D G Q I K + + Sbjct: 789 TTSENTVHVMTIHGSKGLQFPIVFLNDVGKQFNMQDTIGKYVLNDHWGIGIDYLNNQTRE 848 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNR------------LLYVGMTRASD----QLIICKHSN 669 ++ K + E R L V + Q +I Sbjct: 849 FRSPLQKQAILDMTKNAGLSEEMRKLYVAMTRAEQRLYLVAKVKGEKSGDNQQLIQGWQG 908 Query: 670 TSNEK--------KSNQRTWYDMVYDSFHNDERV----------------KKIKLTNSIN 705 ++ ++ +++ + + V + + + Sbjct: 909 LTDANELVLPAAVRNAAKSYLGWIGPAISRHPNVLDRFGDSIHSNVLAGDPTLFNLDFYD 968 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--------LFSPIKNDINEPYIL 757 + + +P + + + Q P K P Sbjct: 969 DERITKASGRQKANQTSPNDFIDQLAQKKLTVAQPTKAAISQVMTFKYPHTAATKTTAYQ 1028 Query: 758 NPSTIDTKGKTN--------------------------------LESLLSDNQTFNRGLI 785 + S I + G Sbjct: 1029 SVSEIKRLFDDPDNTQLSGYSTLDVNKLAKTGRYLKTDFEVPQFISEGGGKPAPTEIGTA 1088 Query: 786 IHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS- 842 H +LQ I T+P + + + K + A + + + R ++ + ++ Sbjct: 1089 THLVLQQIDLTTVPTVEHIEALIANLVKQQVISSAVASQINVDEVLRFYQSEVGEYVLAN 1148 Query: 843 -CDSYSEVSVSG---------KINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQ 891 ++ E S + I+I G ID ++ + +++F+YKT H P+ Sbjct: 1149 PESTHREAPFSLLMKARDVFKDFQDNDEQTILIHGIIDGYVVTDEAVYLFDYKTDHITPK 1208 Query: 892 -EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935 I I + QL +Y L + + L +S + + Sbjct: 1209 TTISDIIDRYRGQLELYGLALSKIL-GRPITHKYLYLLSANQAVQV 1253 >gi|315658704|ref|ZP_07911574.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis M23590] gi|315496335|gb|EFU84660.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis M23590] Length = 1216 Score = 339 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 140/943 (14%), Positives = 302/943 (32%), Gaps = 128/943 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + K L K++ + + ++ + K + + + K+ + Sbjct: 303 KAYYDKYKSLVSKVQADYFSRSAQDLKRDMQRLAPRVNILADIVKDVITAFGQKKRSRNI 362 Query: 147 LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 LDF D +L D + I ++ IL+DE QDT+ +Q +++ + Sbjct: 363 LDFADYEHFALQILTNDDGSPSHIAEMYREQFAEILVDEYQDTNRVQEQILSCIKTGSEA 422 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 LF VGD KQSIY F A+P + + + G I+L +FR Sbjct: 423 -------DGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFNAEGNGTGI---RIDLSQNFR 472 Query: 266 STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 S ++L+ + +F E +S D + + + V+L + + + Sbjct: 473 SRKEVLSTTNYLFKHMMDEEVGEISYDDAAQLYYGAPFDEVDHPVELRTLIEANKEH--- 529 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVR 381 + + + A I + +++ IF G R KDI++L R Sbjct: 530 -------------SELNGSEQEAEYIVKQVKDILENKRIFDMKTGHYRQPTYKDIVILER 576 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + D+ I N R + ++ +++ R I + D+ V ++ Sbjct: 577 SFSQARD----LQQAFKDHDIPFHVNSRQGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLM 632 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIA 495 +S ++ F+ED++ I + Y+ I + N + K Q+ I I + Sbjct: 633 RSVIYQFTEDELANIRVFSPNDDYFYQSIVNYINHDLANKKLVKKLQNFIADIKMYQIYS 692 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 Q + Q F G + L N + E +S+ L + I + Sbjct: 693 QSNPVYQLIDKFYHDHYVIQYFSGLIGGKGRRANLYGLFNKAIEFENSSFRGLYQFIRFI 752 Query: 555 EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ + N N V++MT+H++KGLE P V + +++ + Sbjct: 753 DELIDRGQDFGEENIVGPNDNVVKMMTIHSSKGLEFPFVIYSGLTREFNKKDLREQVILN 812 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + +K E RL+YV +TRA +QLI+ Sbjct: 813 QKYGLGIDYYDIDKNMAYPSLSSVAYKAITEKEMISEEMRLIYVALTRAKEQLILIGRLK 872 Query: 670 TSNE-----------------KKSNQRTWYDM---VYDSFHNDERVKKIKLTNSINKD-- 707 ++ + ++ +++ + + E + N I Sbjct: 873 STKKLEEYEKLAISGSHIAINERLTAEHPFELIYGILSKHKSYELTPDLMFENDIANLAE 932 Query: 708 -----------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 E + + + + + + K P + Sbjct: 933 NIRPNVNIIIDYFEDIIEANHQDMNEQRSISDLNTLDTGNDDIKAKITQQLKFKYPNVIN 992 Query: 751 INEPYILNPSTID-TKGKTNLESLLSDNQTFNRGLIIH---KLLQVIFTLPEHKRKNFIT 806 +P + S + ++ + + G+ + + ++ + ++ + Sbjct: 993 TTKPSKQSVSELKRQLETEESDTNYDRVRQYRIGVATYERPRFMRHVTKRKANEVGTLMH 1052 Query: 807 ---SYCTKNAKLWPAKEYKNLLL-------------------SITRLLENPMMTTAM-SC 843 + K + + + I +++ + + Sbjct: 1053 TVMQHLPFKPKRMTEEALEQYIDHLITQQIIEHDAKKDIKFPEIMTFIQSDLYLEIAEAE 1112 Query: 844 DSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTHH-------HV 889 Y E+ I+ +D+ II G ID I + +YKT Sbjct: 1113 QIYRELPFVVNQAKVDNISDNHEDVAIIQGMIDLIYKKDNQYYFVDYKTDAFNRRKGMTD 1172 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + E + + Q+ Y+ L+ + + L + ++ Sbjct: 1173 EEIGEQLKEKYRIQMQYYKNALETML-HTEVKGSLYFFQFGRL 1214 >gi|88607848|ref|YP_504873.1| ATP-dependent DNA helicase UvrD [Anaplasma phagocytophilum HZ] gi|88598911|gb|ABD44381.1| ATP-dependent DNA helicase, UvrD/Rep family [Anaplasma phagocytophilum HZ] Length = 788 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 184/641 (28%), Positives = 314/641 (48%), Gaps = 34/641 (5%) Query: 38 SMETGNPTILKKAQTLQQASQT--QCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKS 93 ++ G K + L+ + + ++ L +F + +I ++++ ++ Sbjct: 143 ALNCGGLRDKKISTKLRSWNNLVHKTHKKIEEYLKTFICIASLEKKDISSIASKQVLQQC 202 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 P + + Q++ ++ +++ + ++ K T + L ++ YE KK L+++D+I Sbjct: 203 PTVGGAIVNEQEKLLEFAEQYYSARISKRTFHIMQLVRHGIRIYEYDKKNAKYLNYDDII 262 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 + L+ ++ + +D +INHIL+DE QD SL QW ++ L +FF G +++++ Sbjct: 263 NLSLKLISDPTHKDFVLFSLDSQINHILVDESQDNSLEQWHIVAELCNEFFTGLSSNTNQ 322 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIY F A P + +++TN I+L SFRST IL + Sbjct: 323 RTLFVVGDVKQSIYGFQNARPDYFHFMHKYFAQKSTNP----VTIQLSDSFRSTPPILAL 378 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VDKVF+ + I H + R + G V++W + S + P S Sbjct: 379 VDKVFNTLREQVSF---QSQEIVHNTYRANEYGYVEIWPLLRS--TRRKKPYAWDLESIK 433 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + + +LA+ I+ TIS+ I + K R ++A DIL+LVR R + Sbjct: 434 ECGENADHSLLLAQTISQTISSWIKEERKL-QAKNRPVEASDILILVRHRS---VFVDQM 489 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 I V G DR + D++ I+DL+ LG F+L E+D+S +LKSP+F +++ + Sbjct: 490 IASLKQENIPVTGRDRCNIMDYVVIQDLVNLGEFLLLPENDISLATLLKSPIFRYTDSML 549 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 F+I + E +++ +QKF Q +KY+ LI I+Q SP D + IL Sbjct: 550 FEIVSSSSEKCSLWNKLQKFTTM-----QETVKYLKLLISISQNRSPLDLYFFILSQH-- 602 Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 ++QFI G +++++EF+N + + N+ + L+ I ++ P K S N VR Sbjct: 603 KEQFIKCLGQTSVEIIEEFINLLIAFQSNNLNLLEYFIQWIKSTNPVTKSDMSIAKNLVR 662 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 IMTVH+AKG+++P+VFL DT S + + DD P+W N+ Sbjct: 663 IMTVHSAKGMQAPIVFLPDTTSVPK--------CDLQVVFDDKNTPLWCAS--DTNSYCK 712 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 +L + EY RLLYV MTRA D+L I ++ Sbjct: 713 NLKLRKSQEEYNEYLRLLYVAMTRAEDELYIAGIGTANSRS 753 >gi|293115645|ref|ZP_06604556.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876] gi|292809250|gb|EFF68455.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876] Length = 1187 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 139/941 (14%), Positives = 296/941 (31%), Gaps = 119/941 (12%) Query: 70 SSFFLTQKFTPQKNIITQ--EINKKSPDLKEKLKKSQDEFIKIRDRF------------- 114 + F KN T+ +L + + ++ K Sbjct: 275 CNSFTELNNNADKNFRTKPRAGKGTDKELSDYITAERNSLKKEITEIIDLYCCYPYEDII 334 Query: 115 -NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW----I 169 + S A + Y EAK++ + +F D+ ++L ++ + Sbjct: 335 DEVACVRTSITAVVDFTTEFADRYREAKEERQIAEFSDVAHRALEILVSKEGKTEKYTHV 394 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 ++ + + I IDE QD++ +Q +++ +++ +F VGD KQSIY F Sbjct: 395 ADELSELYDEIYIDEYQDSNYVQEKILNAVSR-------CRFGCNNIFMVGDVKQSIYRF 447 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 A P+ + + T IEL +FRST +++ V+ +F + Sbjct: 448 RMARPEIFIDKYNTY----TEEQSPERKIELHKNFRSTVNVINSVNDIFRRIMKKSVGNI 503 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + G + + + + + D +S I A Sbjct: 504 EYNDDAALN-----YGGNI--------KDEINTDTDICMYVKESDDYNDDSKGIINAEIA 550 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A I ++ + KD ++L+R KD + I Sbjct: 551 AMRIKEIMAE--------NEELTYKDFVILLRSGKDA---GPEYVDTLGNMGIPADYAST 599 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 ++ ++ + + I ++ ++ + ++KS F+ +++ I R + Sbjct: 600 TGYFSAYEVRLIIDVLKVIDNERQEIPLLAVMKSYFAGFTANEMALIKGNRRKKNYYDCL 659 Query: 470 IQ--KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVI 526 + K K + + +I E A + + + ++ + G+ Sbjct: 660 CEFSKGDGETAKKCRKFMNFIGEYRKKAGVMTIRELVSELIYSTGYYDYVGFLLNGSRRK 719 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAK 581 ++ F+ + E+ S+S L + +++ ++N VRIMT+H +K Sbjct: 720 MNINMFILQAEKFEKTSFSGLFNFVRYIDKIRNYDVDFGEAGNAGNDNNYVRIMTIHQSK 779 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GL+ PVV L ++ + K+ I + K + + K ++ Sbjct: 780 GLQFPVVILGNSDKRFNEEDLKSKIIIDEDFGISMDYVDLKSRRKQKFLFKEIMKKKYER 839 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF------------ 689 E RLLYV +TRA +L++ ++ ++ ++ F Sbjct: 840 EGTGEEIRLLYVALTRAVQKLVVTGVVSSKKYEEFTSDIDRSIIDMKFILGNKNYISLIL 899 Query: 690 ------HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 + I N + D N R + ++ ++ K + Sbjct: 900 GALQSDELCGKYNYICYDNELLTDNVKDAVKEDLTDINELFRRAFSGRKDTEQVKNTVEY 959 Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLL--------------------SDNQTFNRG 783 P K N + S I E + + RG Sbjct: 960 IYPHKEIKNLKSKYSVSEIKHMSMEENEDEASKVIAPERTKAVPRFRKGVDEEVKGTLRG 1019 Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA 840 H+ +++ K N I Y A + + L L+ + Sbjct: 1020 TAYHRFFEIL-NYDCCKDYNSIEEYLKTSVAAGKISEEYAGLINLKRFEEFLQTDLGKRM 1078 Query: 841 MSCDSY----SEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888 S E ++ + I++ G +D + ++I +YKT Sbjct: 1079 GSAYKKGLLFREQPFIMELGADMIDKEYPSDEKILVQGIVDAFFFEEDKVYIVDYKTDRV 1138 Query: 889 --VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + + + QL +Y + ++ C + Sbjct: 1139 EQGKAGEKALVERYHKQLELYADTISRVTGKETGGCYIYST 1179 >gi|194290034|ref|YP_002005941.1| helicase, uvrd subfamily [Cupriavidus taiwanensis LMG 19424] gi|193223869|emb|CAQ69878.1| Putative helicase, uvrD subfamily [Cupriavidus taiwanensis LMG 19424] Length = 1213 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 167/1014 (16%), Positives = 330/1014 (32%), Gaps = 114/1014 (11%) Query: 1 LKNRFGLSL--NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58 L + G + + + + W ++ S + I + + + Sbjct: 231 LSDCLGEDAQGDVLLQALADEGWRDACEALAARLGAAGRSEQAHAGRITEALMAIAAWRE 290 Query: 59 TQ-----CIEERFSLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIKIR 111 E F+ L + F T P+ T + + + + + L + Sbjct: 291 AGAVPGKPAERVFAQLRAAFFTTTGGPRSLRRTAALARAAGGEGMVDALLDEHAAICAML 350 Query: 112 DRFNT----YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 D + + A + L Y++ K + +DF DL L+ + + Sbjct: 351 DEISARCCEAAVLAINQALFRIGDALLTRYQQHKDEQRAMDFADLEWQAARLMSDEETAT 410 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 +++ ++D H+L+DE QDT+ +QW ++ + + G T+F VGD KQSIY Sbjct: 411 YLQVRLDARYRHLLLDEFQDTNPLQWRIL----QGWLAGYAGLGERPTVFLVGDPKQSIY 466 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F A+ + + + + + A++L V+ VF Sbjct: 467 RFRRADARLFGAAGEMLRDAFGATVLRTNRTRRN-----RAEVLDWVNAVFDSARAEGRY 521 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVS------------------------QHDSQCN 323 ST T G G V L V + + Sbjct: 522 PLYSTQTTALG----GCGGPVWLLPLVEPDEADDADDADHADHADESVAADANGEPANAD 577 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 +S RR+A + + T + +R + D+ +LVR++ Sbjct: 578 SAHRDTLLQPRRQAGDSLRLEEGRRVAAWLRLVRDTVPVHEGSTQRPARWSDMHLLVRRK 637 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 R I + R L L DL AL F+++ E DL +LKS Sbjct: 638 THLADYERALRE----AGIPCLSPRRGGLLATLEALDLSALLAFLMTPESDLDLAHVLKS 693 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQK-FANCGISKFQHVIKYIHELIHIAQFCSPHD 502 PL ++DD+ + E + + + + + +A HD Sbjct: 694 PLVGATDDDLLALAQMEGEGGWWARIEAAGLPAQVSDALREGVPRLRQWLRVAPHQPVHD 753 Query: 503 FFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 I + R+++ +V+ LD FL +L + Y SL + I EL++ Sbjct: 754 LIDQIFHGGEVRRRYAEAAPPDIREQVLANLDAFLKLSLDLDGGRYPSLPKFIDELQEIR 813 Query: 559 PTIKRAHSANH---------------------NEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + V I+TVH AKGLE+P V L+D Sbjct: 814 RGDEGESPDEGGMGDHAEDLEPAGDDPAYAGLDAVHILTVHAAKGLEAPFVVLLDANHSE 873 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + P + P + R + L + + E LLYV MTR Sbjct: 874 PAADRGGILVDWPPSSPVPRHFSAYGKRSERGLARAPLFEAEAALGERENWNLLYVAMTR 933 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A L++ ++ + + + + Sbjct: 934 AQQGLLVSGVKGRASRGSAGEGNAEIAGSWYV-------------RLQAAGVGEMVPAYP 980 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 + + + + E ++ I++ + D + + + ++ + Sbjct: 981 DARGDAADAQALLPARLSEPVRFTDFRLRYRDAIDDARQAGIADDDAQAPDDSDGIVFNA 1040 Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRK----NFITSY------CTKNAKLWPAKEYKNLLLS 827 G ++H LL+ + P + + + T A+ ++ + L + Sbjct: 1041 AAARHGELVHALLERLTRYPGAFAGVPAIDTVLRWFPLTGAHTTAARSAWRQQVEEALAA 1100 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 + +L P++ ++ ++ + ++ RID++ + + I +YK Sbjct: 1101 VATMLRAPVLAPLLAAGDACSARNEVELYDARGRLL---RIDRLVEFDERVVIIDYKL-R 1156 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941 +PQE + AQL Y + +P K + V+ + IP +L Sbjct: 1157 LLPQEHA----AYRAQLGRYAAAIAPMFPGKRVEAG---VATAEGEWIPAERLA 1203 >gi|325694960|gb|EGD36865.1| exonuclease RexA [Streptococcus sanguinis SK150] Length = 1224 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 155/1013 (15%), Positives = 322/1013 (31%), Gaps = 131/1013 (12%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74 + + + T+L L +T I ++ LS Sbjct: 248 ELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNELSSIDETAQILKQIVALSQLSN 307 Query: 75 TQKFTPQ--------KNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLA 125 +Q FT + K + ++ N+ + E+L+ + ++ + + Sbjct: 308 SQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQAECLPLVEL 367 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 Y E KK +F D+ ++L++ +R + + +++DE Sbjct: 368 LRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPE---VRRFYQERYHEVMVDEY 424 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q ++ L S + F VGD KQSIY F A+P+ + + Q Sbjct: 425 QDTNHTQECMLDLL-----------SRGQNRFMVGDIKQSIYRFRQADPQIFSDKFKAYQ 473 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + + +I L +FRS ++L + VF + + D T + + Sbjct: 474 ED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKR 529 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 ++ S + + ++ A + I +I Sbjct: 530 EPNLANRASFLIYEGSKE-------SPEEEGDEGLPQAVSAGEVDLVIKEIIR------L 576 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMAL 424 + + KDI +L R L ++I +V +D + + ++ Sbjct: 577 HNEDGVAFKDITLLTASRT----RNDLILASFEQHQIPLVPDDGAANYLQSVEVLVMLDT 632 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----------- 473 R I + +D + +LKSP+F+F ED++ ++ Q + + +K Sbjct: 633 LRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENLYEKLLNALEGRGLNP 692 Query: 474 ---ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529 K QH + + ++ S +D I + G + L Sbjct: 693 TLVTQKLQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQDRFYYDMVGTLANGAQRQANL 752 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLES 585 E++S+ L I +++ +A + VR+MT+H +KGLE Sbjct: 753 YALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAAPKDAVRLMTIHKSKGLEF 812 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSRNNIVS 633 VFL++ + + + + Sbjct: 813 KYVFLLNMDKAFNRQDSSSAIILSRTNGVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQ 872 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-------------------NEK 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 873 QNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRLSVSLRSQ 932 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREETI 730 SN + W + F ++ + + + + + + I Sbjct: 933 LSNFQDWLYAIQAVFSDENLAYETRFVTDEELTSEEIGRINEPVLFPADDLADNRQSDDI 992 Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK------------------------G 766 ++ +D + +L S ++ I P + PS I Sbjct: 993 RRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYELIMDTDGLDIMDERAAFRPQPNF 1052 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + G +H+L+Q I + + A + + L Sbjct: 1053 DLPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVLRSALAQVQADEAVKKQIQLP 1110 Query: 827 SITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFE 882 I+ E + + S E + + ++ ++ G +D + + I +F+ Sbjct: 1111 KISSFFETDLGRLLIENSDRVRREAPFAMLKRDEISGQEFVLRGILDGYLLFEDRIILFD 1170 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 YKT + + + QL +Y + L SY + LI + ++ ++ Sbjct: 1171 YKTDKYKDSS--ELIARYCGQLDLYAQALSRSYGISQIEKYLILLGGEQLQVV 1221 >gi|146318409|ref|YP_001198121.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 05ZYH33] gi|146320605|ref|YP_001200316.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 98HAH33] gi|253750625|ref|YP_003024062.1| exonuclease RexA [Streptococcus suis BM407] gi|251764567|sp|A4W0M7|ADDA_STRS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764570|sp|A4VUD2|ADDA_STRSY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|145689215|gb|ABP89721.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Streptococcus suis 05ZYH33] gi|145691411|gb|ABP91916.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Streptococcus suis 98HAH33] gi|251819057|emb|CAZ55679.1| exonuclease RexA [Streptococcus suis BM407] gi|292558201|gb|ADE31202.1| putative exonuclease RexA [Streptococcus suis GZ1] Length = 1227 Score = 338 bits (867), Expect = 3e-90, Method: Composition-based stats. Identities = 162/985 (16%), Positives = 323/985 (32%), Gaps = 131/985 (13%) Query: 42 GNPTILKKAQTLQQASQTQCIEERFSLLSSF--FLTQKFTPQKNIITQEINKKSPDLKE- 98 G+ + + ++ L+ L + +T K L Sbjct: 279 GSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPKDEHLIAF 338 Query: 99 -------------KLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 +L+ E ++ + + + + Y + K K Sbjct: 339 KEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKE 398 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 +F D+ +L++ A IR ++ + +++DE QD + Q ++ L Sbjct: 399 AAFEFGDIGHFAIRILEEN---ADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL----- 450 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 S+ F VGD KQSIY F A+P + + Q Q +I L +F Sbjct: 451 ------SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQ----ANPQSGKLILLKENF 500 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RS ++L + +F+ + Q T + GQ E +D Q Sbjct: 501 RSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQ--- 557 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 +S S D+ + + +A I + + KDI +LV+KR Sbjct: 558 --DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRT 606 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 L + + I +V + L + ++ R I + +D + V +LKS Sbjct: 607 H----NDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKS 662 Query: 444 PLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQ----HVIKYIHELIH 493 P+F F ED++ +I Q E + + K + + + Sbjct: 663 PMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRA 722 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 A+ S +D + K + G++ L + E+ Y L I+ Sbjct: 723 YAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIA 782 Query: 553 ELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF---------- 598 +++ K N V++MT+H +KGLE VFL++ + Sbjct: 783 MIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVII 842 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 S K+ + + + D P+ + + ++ LK + E RLLYV +TRA Sbjct: 843 SRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRA 902 Query: 659 SDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 +L + N + + T+ D + Sbjct: 903 EKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKV 962 Query: 703 SINKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + ++ + + + E I Q +D+ ++L K I P Sbjct: 963 FVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPS 1022 Query: 756 ILNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIF 794 + PS I + S G +H+L+Q + Sbjct: 1023 LRTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLD 1082 Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS 852 + +A+ + + I + + ++ + E + Sbjct: 1083 LSWLVTEDTVRAALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFA 1140 Query: 853 --GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 + +++ ++ G ID + +I +F+YKT + + + + AQ+ +Y + Sbjct: 1141 SLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPIQLSQRYQAQMQLYAEA 1198 Query: 911 LKDSYPNKSLVCLLIYVSEPKVFII 935 LK +Y + C LI + ++ ++ Sbjct: 1199 LKKAYKIDRVDCHLILLGGERIEVV 1223 >gi|116628401|ref|YP_821020.1| ATP-dependent exoDNAse beta subunit [Streptococcus thermophilus LMD-9] gi|122267004|sp|Q03IZ8|ADDA_STRTD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116101678|gb|ABJ66824.1| DNA helicase/exodeoxyribonuclease V, subunit A [Streptococcus thermophilus LMD-9] Length = 1217 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 144/1020 (14%), Positives = 324/1020 (31%), Gaps = 138/1020 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 + + + D + + + + N + + +E+ L Sbjct: 240 DSLKDGLLADFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMEDLLKQL 299 Query: 70 SSFF-------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKMFK 121 + +T+ + + NK + +L++ + + + Sbjct: 300 LTLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLAKHNDDILP 359 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + + Y +AK + +F D+ +L++ + + ++ Sbjct: 360 MLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPE---VAVSYRDRYHEVM 416 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QD S Q ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 VDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNDKF 465 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRS 299 ++ + +I L +FRS +++L + VFS + + D T + S Sbjct: 466 QLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGS 521 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + + E ++ D + E S + S + I + Sbjct: 522 QKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGEIS-------LVIKEIIKLHEQ 574 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAI 418 ++ +DI +L R ++ I +V ++ + + L + Sbjct: 575 G----------VRFEDITLLAPNRNTYLD----LMVSFEEHGIPLVPDEYKSSYLESLEV 620 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----- 473 ++ R I + +D + V +L+SP+FNF+EDD+ +I Q + + + + Sbjct: 621 MIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKSGL 680 Query: 474 -----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVID 527 +K + + + ++ S +D I + + Sbjct: 681 HPEVVMQGLDAKLTLFTETLADWRDYSKCHSIYDLIWKIYNDRFYYDYVGGLPRAEQRQA 740 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKG 582 L E+ + L I +++ N V +MT+H +KG Sbjct: 741 NLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVP-KNAVSLMTIHKSKG 799 Query: 583 LESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKSRN 629 LE VF++ + H + + L D + Sbjct: 800 LEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLET 859 Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS------------------ 671 + + ++++ E RLLYV MTRA +L + + Sbjct: 860 LTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKETLTQQYGTNVENNRLPVA 919 Query: 672 -NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI----AYEWSTHHPENTPLER 726 ++ + + W + +F + ++ + + + + + + Sbjct: 920 IRDQIATYQDWIMALDTAFMRKDLKFTVRFVEAEELTPEAIGQVEVQAAVDADDLSNNRQ 979 Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------------------ 768 E IK+ + + +KL I+ P + PS + T + Sbjct: 980 TEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKTLYEPIMDTEGVDIMDKKEGVQP 1039 Query: 769 ---------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + G H+L+Q + + ++ + Sbjct: 1040 LETASTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQAL--SRVSADDQV 1097 Query: 820 EYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISISQ 875 + + L + + + ++ E + + K+D ++ G ID + + Sbjct: 1098 KARVQLEKLLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLE 1157 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT H + + Q+S+Y K L +Y + + LI + + ++ Sbjct: 1158 DRIVLFDYKTDHFT--HPSELKTRYQGQMSLYAKALSQAYQMEKVDKYLILLGGKDLEVV 1215 >gi|296876208|ref|ZP_06900262.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC 15912] gi|296432919|gb|EFH18712.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC 15912] Length = 1221 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 162/1020 (15%), Positives = 340/1020 (33%), Gaps = 129/1020 (12%) Query: 9 LNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E I + L+ F + N+ + + + + + E+ S Sbjct: 235 EGDLMESIQQALYEAESFFAFHLSNEGQAFGKAKYLEAVEEVLDQIGSLTGPTNKEQVTS 294 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFK-- 121 +L + + + + + ++ +L + + + + ++ + + Sbjct: 295 VLKAVVAISRASNGGALTNRARKEELKELVTAYNQDKTIHINRLRDLENQLYQLEFQQTF 354 Query: 122 ------STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + Y E K + +F D+ +L++ +R + Sbjct: 355 HQEEGPMLSLLRDFIRDFARAYLERKIQEKAYEFGDISHFAIQILEQFPE---VRQAYQE 411 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + I++DE QDT+ Q ++ L S+ F VGD KQSIY F A+P+ Sbjct: 412 RYHEIMVDEYQDTNHTQERMLDLL-----------SNGHNRFMVGDIKQSIYRFRQADPQ 460 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + + Q+ G K +I L +FRS ++L + VF + + D T Sbjct: 461 IFNDKFKAYQEE----GAKGRLILLKENFRSHVEVLDATNDVFRHLMDEEVGEIDYNQTH 516 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + Q + +D + ++++ D ++ I I Sbjct: 517 YLVAGSDKQRMALLQHRAEFLLYDGSQDQEEKT----EDEEAASGLETVSKGEILLVIKE 572 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-D 414 ++ + + K+I +L R + Y+I +V + + Sbjct: 573 ILR------LHRVEKVPFKEITLLTATRT----RNDAILEAFDQYRIPIVADSGQAHYLE 622 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET----------- 463 L + ++ R I + D + V ++KSP+F+F ED++ +I Q Sbjct: 623 SLEVMVMLDTLRTINNPLHDYALVALMKSPMFDFDEDELARISLQTFPEQKQLPFYHKVQ 682 Query: 464 ---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS- 519 E E+ +K ++ +K++ A+ S +D I + + Sbjct: 683 LAIEKTAEHANLIDAKLSAKIKNFLKFLSTWRAAAKTSSLYDLLWKIYEDRYYYDYVGAL 742 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIM 575 G + L E+ S+ L I+ +++ +A + V++M Sbjct: 743 PNGVQRQANLYALTLRANDYEKASFKGLSRFIAMIDKVIENEHDLASVPLAAPKDAVQLM 802 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP------------ 623 TVH +KGLE VF+++ + + +P Sbjct: 803 TVHKSKGLEFKYVFILNMDKAFNRKDQSGPIILSRQKGIGFKYIANLPVETENPAAPESI 862 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN----------- 672 + + ++ K +T E RLLYV MTRA +L + Sbjct: 863 RLQIETPCYQRNVEETKLATISEQMRLLYVAMTRAELKLYLVGKGWEDKLRDTDWGTSRN 922 Query: 673 -----EKKSNQRTWYDMVYDSFH-------NDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 EK+ ++ D ++ + + ++ E + E + + Sbjct: 923 GKLDPEKRKEWTSYQDWLFAIQDVFTKNTLAYDTRFVTDEDLTPDQLEPLEKEKDSRFDQ 982 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID----------------- 763 + + E I++ +D + +L I+ P + PS I Sbjct: 983 LKDIRQSEDIRRALDILENVDRLNQLYAPAIHLPSVRTPSQIKKFYEPVMDANGVQIMDA 1042 Query: 764 ----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 K + G +H+L+Q + E + A+ Sbjct: 1043 KLVVPKFELPTFGQEKAVTGAQVGSAVHELMQRVPLEEEITLDTLRQALEQVQAEPAVKA 1102 Query: 820 EYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSG--KINCPKKDIIISGRIDQISISQ 875 K L +I E P+ T E + K +D ++ G +D + + Sbjct: 1103 RIK--LEAILAFYETPLGTLLQKEASRVRREAPFAMLKKDPASGEDFVVRGILDGYVVLE 1160 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT H+ + + + QL +Y + L+ SY + + L+ + P + ++ Sbjct: 1161 DRILLFDYKTDHY--EVPSQLVERYRDQLDLYAEALRRSYGKEQVEKYLVLLGGPHLEVV 1218 >gi|253751554|ref|YP_003024695.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis SC84] gi|253753455|ref|YP_003026596.1| ATP-dependent exonuclease subunit A [Streptococcus suis P1/7] gi|251815843|emb|CAZ51451.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis SC84] gi|251819701|emb|CAR45515.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis P1/7] gi|319757986|gb|ADV69928.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis JS14] Length = 1216 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 162/985 (16%), Positives = 323/985 (32%), Gaps = 131/985 (13%) Query: 42 GNPTILKKAQTLQQASQTQCIEERFSLLSSF--FLTQKFTPQKNIITQEINKKSPDLKE- 98 G+ + + ++ L+ L + +T K L Sbjct: 268 GSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPKDEHLIAF 327 Query: 99 -------------KLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 +L+ E ++ + + + + Y + K K Sbjct: 328 KEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKE 387 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 +F D+ +L++ A IR ++ + +++DE QD + Q ++ L Sbjct: 388 AAFEFGDIGHFAIRILEEN---ADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL----- 439 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 S+ F VGD KQSIY F A+P + + Q Q +I L +F Sbjct: 440 ------SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQ----ANPQSGKLILLKENF 489 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RS ++L + +F+ + Q T + GQ E +D Q Sbjct: 490 RSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQ--- 546 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 +S S D+ + + +A I + + KDI +LV+KR Sbjct: 547 --DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRT 595 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 L + + I +V + L + ++ R I + +D + V +LKS Sbjct: 596 H----NDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKS 651 Query: 444 PLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQ----HVIKYIHELIH 493 P+F F ED++ +I Q E + + K + + + Sbjct: 652 PMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRA 711 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 A+ S +D + K + G++ L + E+ Y L I+ Sbjct: 712 YAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIA 771 Query: 553 ELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF---------- 598 +++ K N V++MT+H +KGLE VFL++ + Sbjct: 772 MIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVII 831 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 S K+ + + + D P+ + + ++ LK + E RLLYV +TRA Sbjct: 832 SRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRA 891 Query: 659 SDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 +L + N + + T+ D + Sbjct: 892 EKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKV 951 Query: 703 SINKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + ++ + + + E I Q +D+ ++L K I P Sbjct: 952 FVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPS 1011 Query: 756 ILNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIF 794 + PS I + S G +H+L+Q + Sbjct: 1012 LRTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLD 1071 Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS 852 + +A+ + + I + + ++ + E + Sbjct: 1072 LSWLVTEDTVRAALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFA 1129 Query: 853 --GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 + +++ ++ G ID + +I +F+YKT + + + + AQ+ +Y + Sbjct: 1130 SLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPIQLSQRYQAQMQLYAEA 1187 Query: 911 LKDSYPNKSLVCLLIYVSEPKVFII 935 LK +Y + C LI + ++ ++ Sbjct: 1188 LKKAYKIDRVDCHLILLGGERIEVV 1212 >gi|125718261|ref|YP_001035394.1| exonuclease RexA, putative [Streptococcus sanguinis SK36] gi|251764569|sp|A3CNT9|ADDA_STRSV RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|125498178|gb|ABN44844.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36] Length = 1224 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 158/1020 (15%), Positives = 326/1020 (31%), Gaps = 138/1020 (13%) Query: 15 LIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-- 71 I LW L F + + + + L +++ IEE +L Sbjct: 241 QIKSALWELETFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNESSSIEETAQILKQIV 300 Query: 72 ------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYK 118 + + K + ++ N+ + E+L+ + ++ + + Sbjct: 301 ALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQDE 360 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 Y E KK +F D+ ++L+ +R + + Sbjct: 361 CLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPE---VRRFYQERYH 417 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +++DE QDT+ Q ++ L S + F VGD KQSIY F A+P+ Sbjct: 418 EVMVDEYQDTNHTQERMLDLL-----------SRGKNRFMVGDIKQSIYRFRQADPQIFS 466 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + + Q+ + +I L +FRS ++L + VF + + D T Sbjct: 467 DKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLV 522 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + + + + + S S + + ++ A + I +I Sbjct: 523 AGNPAKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVSAGEVDLVIKEIIR 575 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLA 417 + + KDI +L R L ++I +V +D + Sbjct: 576 ------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLVPDDGAANYLQSVE 625 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-- 475 + ++ R I + +D + +LKSP+F+F ED++ ++ Q + + +K N Sbjct: 626 VLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENLYEKLVNAL 685 Query: 476 ------------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFG 522 K QH + + ++ S +D I + G Sbjct: 686 EGRGLNPALVTEELQKKLQHFYETLQSWRTYSKTHSLYDLIWKIYQDRFYYDMVGTLVNG 745 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVH 578 + L E++S+ L I +++ +A + VR+MT+H Sbjct: 746 AQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAAPKDAVRLMTIH 805 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSK 626 +KGLE VFL++ + + + + Sbjct: 806 KSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVKDSYAPNQLRIS 865 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS--------------- 671 + L+ ++ E RLLYV MTRA +L + + Sbjct: 866 MDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRL 925 Query: 672 ----NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTP 723 + SN + W + D F ++ + + + + Sbjct: 926 SASLRSQISNFQDWLYAIQDVFSDENLAYETRFVTDEELTAEEIGRINEPVLFPADDLAD 985 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------------------- 762 + + I++ +D + +L S ++ I P + PS I Sbjct: 986 NRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTDGLDIMDERAA 1045 Query: 763 ---DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + + G +H+L+Q I + + A Sbjct: 1046 FRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVLRSALAQVQADDAV 1103 Query: 820 EYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQ 875 + + L I E + + S E + + ++ ++ G +D + + Sbjct: 1104 KKQIQLSKIASFFETDLGRLLIENSDRVRREAPFAMLKRDEASGQEFVLRGILDGYLLFE 1163 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + + + QL +Y + L SY + LI + ++ ++ Sbjct: 1164 DRIILFDYKTDKYKDSS--ELIARYRGQLDLYAQALSRSYGISQIEKYLILLGGEQLQVV 1221 >gi|289551202|ref|YP_003472106.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis HKU09-01] gi|289180734|gb|ADC87979.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis HKU09-01] Length = 1216 Score = 338 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 139/943 (14%), Positives = 302/943 (32%), Gaps = 128/943 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + K L K++ + + ++ + K + + + K+ + Sbjct: 303 KAYYDKYKSLVSKVQADYFSRSAQDLKRDMQRLAPRVNILADIVKDVITAFGQKKRSRNI 362 Query: 147 LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 LDF D +L D + I ++ IL+DE QDT+ +Q +++ + Sbjct: 363 LDFADYEHFALQILTNDDGSPSHIAEMYREQFAEILVDEYQDTNRVQEQILSCIKTGSEA 422 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 LF VGD KQSIY F A+P + + + G I+L +FR Sbjct: 423 -------DGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFNAEGNGTGI---RIDLSQNFR 472 Query: 266 STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 S ++L+ + +F E +S D + + + V+L + + + Sbjct: 473 SRKEVLSTTNYLFKHMMDEEVGEISYDDAAQLYYGAPFDEVDHPVELRTLIEADKEH--- 529 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVR 381 + + + A I + +++ IF G R KDI++L R Sbjct: 530 -------------SELNGSEQEAEYIVKQVKDILENKRIFDMKTGHYRQPTYKDIVILER 576 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + D+ I N R + ++ +++ R I + D+ V ++ Sbjct: 577 SFSQARD----LQQAFKDHDIPFHVNSRQGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLM 632 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIA 495 +S ++ F+ED++ I + Y+ I + N + K Q+ I I + Sbjct: 633 RSVIYQFTEDELANIRVFSPNDDYFYQSIVNYINHDLANKKLVKKLQNFIADIKMYQIYS 692 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 Q + Q F G + L N + E +S+ L + I + Sbjct: 693 QSNPVYQLIDKFYHDHYVIQYFSGLIGGKGRRANLYGLFNKAIEFENSSFRGLYQFIRFI 752 Query: 555 EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ + N N V++MT+H++KGLE P V + +++ + Sbjct: 753 DELIDRGQDFGEENIVGPNDNVVKMMTIHSSKGLEFPFVIYSGLTREFNKKDLREQVILN 812 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + +K E RL+YV +TRA +QLI+ Sbjct: 813 QKYGLGIDYYDIDKNMAYPSLSSVAYKAITEKEMISEEMRLIYVALTRAKEQLILIGRLK 872 Query: 670 TSNE-----------------KKSNQRTWYDM---VYDSFHNDERVKKIKLTNSINKD-- 707 ++ + ++ +++ + + E + N I Sbjct: 873 STKKLEEYEKLAISGSHIAVNERLTAEHPFELIYGILSKHKSYELTPDLMFENDIANLAE 932 Query: 708 -----------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 E + + + + + + K P + Sbjct: 933 SIRPNVNIIIDYFEDIIEANHQDMNEQRSISDLNTLDTGNDDIKAKITQQLKFKYPNVIN 992 Query: 751 INEPYILNPSTID-TKGKTNLESLLSDNQTFNRGLIIH---KLLQVIFTLPEHKRKNFIT 806 +P + S + ++ + + G+ + + ++ + ++ + Sbjct: 993 TTKPSKQSVSELKRQLETEESDTNYDRVRQYRIGVATYERPRFMRHVTKRKANEVGTLMH 1052 Query: 807 ---SYCTKNAKLWPAKEYKNLLL-------------------SITRLLENPMMTTAM-SC 843 + + + + + I +++ + + Sbjct: 1053 TVMQHLPFKPERMTEEALEQYIDHLITQQIIEHDAKKDIKFPEIMTFIQSDLYLEIAEAE 1112 Query: 844 DSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTHH-------HV 889 Y E+ I+ +D+ II G ID I + +YKT Sbjct: 1113 QIYRELPFVVNQAKVDNISDNHEDVAIIQGMIDLIYKKDNQYYFVDYKTDAFNRRKGMTD 1172 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + E + + Q+ Y+ L+ + + L + ++ Sbjct: 1173 EEIGEQLKEKYRIQMQYYKNALETML-HTEVKGSLYFFQFGRL 1214 >gi|163815442|ref|ZP_02206815.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759] gi|158449079|gb|EDP26074.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759] Length = 1303 Score = 338 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 154/970 (15%), Positives = 296/970 (30%), Gaps = 136/970 (14%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 + P+K + + +L + E ++ + N A L L + Sbjct: 341 RDADPEKKAFVKNRRDVYKGMITELMSAITEVDEVLGQLNI--TAPVLGALLDLTELYMD 398 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSL 190 + K + +F D+ +L R V + ++ I IDE QD++ Sbjct: 399 ELMKVKMDKNLFEFHDIEEFAFRILCDGIEDGRPVPSKAGREVSLRYREIFIDEYQDSNF 458 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ ++ + F VGD KQSIY F A P + + Q+ + Sbjct: 459 IQEYIL-------GSVAGHGENINNTFMVGDVKQSIYKFRMARPDLFIGKYNTYQRLGDD 511 Query: 251 AGQKF----SIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQ 304 + I L +FRS ++L V+ +F G+ D + + + Sbjct: 512 DKASADMIGNCIILTRNFRSEINVLRTVNALFEQLMRKEIGGIEYDDAARLNSKYALEDP 571 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 G + V Q + T D S A I A+ IA I ++ D Sbjct: 572 HGRMS-EPGDVYQGPKSELIMIDGDTVSGDMDEDYSCAQIEAKYIANKIHEIVDGDDPMY 630 Query: 365 ----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 +G R ++ DI++L+R + + + D I + + + Sbjct: 631 IHDGDGTVRKVEYSDIVILLRSVSGSATV---FDQVFEDEGIPIYIQSESGYFGAVEVSC 687 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI---------CTQRHETETVYEYIQ 471 L+++ I + D +L+SP+ E+++ +I R +Y+ + Sbjct: 688 LVSMLSVIDNSYVDGDLAAVLRSPMVGMDEEELARIVGEYRTRYEIDGRDYNVRLYDKLI 747 Query: 472 KFANCGIS---------------------------KFQHVIKYIHELIHIAQFCSPHDFF 504 + K + + + L F S D Sbjct: 748 DYLENHDDEGQGECAGLDDMAKSSAAIGDEDKLIGKVRAFVGMLDYLKENKNFMSLSDII 807 Query: 505 TLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 +L +R G +D + E+NS + I + + Sbjct: 808 RYVLDQTGFYWFVGARPMGRRRQANIDMLIKKADDFEKNS-KGVFNFIRYVNELKTNSLD 866 Query: 564 AHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 A+ + VR+MT+H +KGLE PV+F+ G KK+ + Sbjct: 867 FAEADIVSDNDDVVRVMTMHKSKGLEFPVLFVAGLGKSFNMKDVQKKVLVHQQYYLTASA 926 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + K + + + ++ E R+LYV +TRA ++L + + ++ K N Sbjct: 927 IDADARVKRDTFLRNVMASEMRVENYAEELRVLYVALTRAKEKLYMTGCPKSLDKFKENC 986 Query: 679 R------------------------------TWYDMVYDSFHNDERVKKIKLTNSINKDE 708 + + + + +K E Sbjct: 987 GIYAIGSEMSSAALINGKSFLSWIYTALSYIDHEEFLDVNEIKSSDFVHTDAVSLTSKTE 1046 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP--------- 759 E E E I++ +D + K I E L Sbjct: 1047 NSDEMEILDETEGLDKEVFEQIRKGIDFRYGHVSSGLKSKMSITEIKKLQAMYDDTEYID 1106 Query: 760 -------STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812 + + S G + HK++++ + + Sbjct: 1107 MGRERKYAERKSAPAPKFMSGEKTIAGNEIGTVYHKIMELADFRQTTEAGIYADVERIFG 1166 Query: 813 AKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDSY----SEVSVSGKI-----------N 856 L+ + + I ++L + + + D E + + Sbjct: 1167 LGLFDDGYREKIKADKIVKMLGSSLGQRMAAADLRGDLYRERQFYMMMTPGEILGRSEKD 1226 Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916 + I++ G ID I I + +YKT E + + QL Y +L+ Sbjct: 1227 KTDETIVVQGIIDAYFIEDGQIVLMDYKTDSVKKS--EELVRKYHVQLDKYADVLEQLTG 1284 Query: 917 NKSLVCLLIY 926 K + +IY Sbjct: 1285 MK-VKEKIIY 1293 >gi|312279028|gb|ADQ63685.1| ATP-dependent helicase/nuclease subunit A [Streptococcus thermophilus ND03] Length = 1217 Score = 338 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 142/1020 (13%), Positives = 318/1020 (31%), Gaps = 138/1020 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 + + + D + + + + N + + +E+ L Sbjct: 240 DSLKDGLLADFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMEDLLKQL 299 Query: 70 SSFF-------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKMFK 121 + +T+ + + NK + +L++ + + + Sbjct: 300 LTLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLAKHNDDILP 359 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + + Y +AK + +F D+ +L++ + + ++ Sbjct: 360 MLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPE---VAVSYRDRYHEVM 416 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QD S Q ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 VDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNDKF 465 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRS 299 ++ + +I L +FRS +++L + VFS + + D T + S Sbjct: 466 QLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGS 521 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + + E ++ D + E S + S + I + Sbjct: 522 QKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGEIS-------LVIKEIIKLHEQ 574 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAI 418 ++ +DI +L R ++ I +V ++ + + L + Sbjct: 575 G----------VRFEDITLLAPNRNTYLD----LMVSFEEHGIPLVPDEYKSSYLESLEV 620 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----- 473 ++ R I + +D + V +L+SP+FNF+EDD+ +I Q + + + + Sbjct: 621 MIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKSGL 680 Query: 474 -----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVID 527 +K + + + ++ S +D I + + Sbjct: 681 HPEVVMQGLDAKLTLFTETLADWRDYSKCHSIYDLIWKIYNDRFYYDYVGGLPRAEQRQA 740 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKG 582 L E+ + L I +++ N V +MT+H +KG Sbjct: 741 NLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVP-KNAVSLMTIHKSKG 799 Query: 583 LESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKSRN 629 LE VF++ + H + + L D + Sbjct: 800 LEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLET 859 Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS------------------ 671 + + ++++ E RLLYV MTRA +L + + Sbjct: 860 LTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKETLTQKYGTDVENNRLPVA 919 Query: 672 -NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----LER 726 ++ + + W + +F + ++ + + + Sbjct: 920 LRDQIATYQDWIMALDTAFMRKDLKFTVRFVEDEELTPEAIGQVEVKAAVDADDLSNNRQ 979 Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------------------ 768 E IK+ + + +KL I+ P + PS + + Sbjct: 980 TEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQL 1039 Query: 769 ---------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + G H+L+Q + + ++ + Sbjct: 1040 LETTTTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQAL--SRVSADDQV 1097 Query: 820 EYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISISQ 875 + + L + + + ++ E + + K+D ++ G ID + + Sbjct: 1098 KARVQLEKLLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLE 1157 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + + Q+S+Y K L +Y + LI + + ++ Sbjct: 1158 DRIVLFDYKTDRFT--HPSELKERYKGQMSLYAKALSQAYQIDKIDKYLILLGGKDLEVV 1215 >gi|68171208|ref|ZP_00544613.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|67999363|gb|EAM86007.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] Length = 860 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 195/641 (30%), Positives = 302/641 (47%), Gaps = 41/641 (6%) Query: 39 METGNPTILKKAQTLQQASQTQCIEER--FSLLSSFFLTQKFTPQKNI---ITQEINKKS 93 + G+ K ++ L + S + + F+ +K+I IT++ S Sbjct: 222 LSEGSIRDKKISENLVKWSNLSQKYKLQKLNKYVKIFINLPSLEKKSISSIITKKTLTNS 281 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 P++++ + Q+E + F+T K+ + T+ + +AK Y++ K+K LD D+I Sbjct: 282 PEIEKIVSDIQEEILNFIKTFHTNKIAERTIHLIEIAKCFTKLYQQDKQKLNYLDHNDII 341 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +LLK WI + +D +I+HILIDE QD S+ QW +I L +FF G T Sbjct: 342 DLALNLLKNPAYKDWILFHLDSKIDHILIDESQDNSIKQWSIILQLCHEFFSGIGTTEEL 401 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIY F A P +++T K ++ L SFRST IL + Sbjct: 402 RTLFIVGDIKQSIYGFQNARPDYFNPMCHYFTQQSTQY--KHKVLHLTQSFRSTPPILKL 459 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VDKVF+ S TT I H R G V++W + +++ ++ F Sbjct: 460 VDKVFNNFCQEISFS---TTKIEHEIFRKNDPGYVEIWPIIDIKNNKN-------FSLDF 509 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 ++ + +LA IA I + I I K R I A D L+LVR R I + Sbjct: 510 ENRTDLDTNLLLASTIANKIHSWIINKRIL-LAKNRPITAGDFLILVRHRTC--FIDHVI 566 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 LK I + D+F + D+ I+DL+ LG F+L E+DL+ +LKSP+F F+E I Sbjct: 567 TSLK-KLDIPTLERDKFKIMDYTIIQDLVNLGEFLLLPENDLALTGLLKSPIFEFNEKQI 625 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 F + R ++E SKF + Y+ +LI ++Q SP + + I+ K Sbjct: 626 FDLAYNR-NNTYLWE-------ELQSKFSTISNYLKQLISVSQLHSPLNLYHHIISEHKH 677 Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 +F R G ++ EF+N ++ E ++ +SLQ I ++ P IK + + V+ Sbjct: 678 --KFTKRLGQSNTKIIGEFINLLIQCESHNINSLQAFIHWIKNTNPEIKSDINLTKDYVK 735 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 IMTVH AKG++SP+VFL DT + + + N+ Sbjct: 736 IMTVHNAKGMQSPIVFLSDTTT----------IPKSDTQLVFDEEYTPFWIRNDINDFCE 785 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 +L K + EY RLLYV MTRA D+L I S N+ Sbjct: 786 NLKSQQKTNEYNEYLRLLYVAMTRAEDELYITGISPIQNKS 826 >gi|322389861|ref|ZP_08063402.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903] gi|321143442|gb|EFX38879.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903] Length = 1221 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 162/987 (16%), Positives = 335/987 (33%), Gaps = 118/987 (11%) Query: 30 DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89 + + + G+ T + L + R S + + K+++T Sbjct: 269 YLEAVEEVLDQIGSLTGSVNKEQLTSVLKAVVAISRASNGGALTNRARKEELKDLVTAYN 328 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLD 148 K+ + +L+ +++ ++ + ++ L+ L + Y E K + + Sbjct: 329 QDKTIHI-NRLRDLENQLYQLEFQQAFHQEEGPMLSLLRDFIRDFARAYLERKIQEKAYE 387 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F D+ +L++ +R + + +++DE QDT+ Q ++ L Sbjct: 388 FGDISHFAIQILEQFPE---VRQAFQERYHEVMVDEYQDTNHTQERMLDLL--------- 435 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 S+ F VGD KQSIY F A+P+ + + Q+ G K +I L +FRS Sbjct: 436 --SNGHNRFMVGDIKQSIYRFRQADPQIFNDKFKAYQEE----GAKGRLILLKENFRSHV 489 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 ++L + VF + + D T + Q + +D + ++++ Sbjct: 490 EVLDATNDVFRHLMDEEVGEIDYNQTHYLVAGSDKQRMALPQHRAEFLLYDGSQDQEEKT 549 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388 D +I I I ++ + + K+I +L R Sbjct: 550 ----EDEEAALGVETISKGEILLVIKEILR------LHRVEKVPFKEITLLTATRT---- 595 Query: 389 ITFLTRFLKNDYKISVVGNDRFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 + Y+I +V + + L + ++ R I + D V ++KSP+F+ Sbjct: 596 RNDAILEAFDQYQIPIVADSGQAHYLESLEVMVMLDTLRTINNPLHDYPLVALMKSPMFD 655 Query: 448 FSEDDIFKI--------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 F ED++ +I + E E + +K ++ +K + Sbjct: 656 FDEDELARISLQTLPEQKQVAFYHKVQLALEKTAEQARLIDAKLSAKIKNFLKVLSTWRA 715 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 A+ S +D I + + G + L E+ S+ L I+ Sbjct: 716 AAKTSSLYDLLWKIYEDRYYYDYVGALPNGAQRQANLYALTLRANDYEKASFKGLSRFIA 775 Query: 553 ELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 +++ +A + V++MTVH +KGLE VF+++ + + Sbjct: 776 MIDKVIENEHDLASVPLAAPKDAVQLMTVHKSKGLEFKYVFILNMDKAFNRKDQSGPIIL 835 Query: 609 MPSLNDDPGIPIWIP------------QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +P + + ++ K +T E RLLYV MT Sbjct: 836 SRQKGIGFKYVASLPVETENPAAPETIRLQIETPCYQRNVEETKLATISEQMRLLYVAMT 895 Query: 657 RASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFH-------NDE 693 RA +L + EK+ ++ D ++ + Sbjct: 896 RAELKLYLVGKGREDKLRDTDWGTSRNGKLDPEKRKEWTSYQDWLFAIQDVFTKNTLAYD 955 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + +K E + E + + + + E I++ +D + +L I+ Sbjct: 956 TRFVTDEDLTPDKLEPLEKEKDSRLDQLKDVRQSEDIRRALDILENVDRLNQLYAPAIHL 1015 Query: 754 PYILNPSTID---------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQV 792 P + PS I + G +H+L+Q Sbjct: 1016 PSVRTPSQIKKFYEPVMDANGVQIMDAKTVTPDFERPTFGQEEAVTGAQVGSAVHELMQR 1075 Query: 793 IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVS 850 + + + A K L +I E P+ T + E Sbjct: 1076 VPLGEAITLETLRQALEQVQAAPAVKAHIK--LEAILAFFETPLGTLLQREATRVHREAP 1133 Query: 851 VSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 + K +D ++ G +D + + I +F+YKT H+ + + + QL +Y Sbjct: 1134 FAMLKKDPASGEDFVVRGILDGYVVLEDRILLFDYKTDHY--KVPSQLVERYRDQLDLYA 1191 Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFII 935 + L+ SY + + L+ + P + ++ Sbjct: 1192 EALRRSYGKEQVEKYLVLLGGPHLEVV 1218 >gi|111657164|ref|ZP_01407943.1| hypothetical protein SpneT_02001617 [Streptococcus pneumoniae TIGR4] Length = 1177 Score = 337 bits (864), Expect = 6e-90, Method: Composition-based stats. Identities = 151/971 (15%), Positives = 311/971 (32%), Gaps = 139/971 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E I + LW L F ++ + + + +Q + ++L+ Sbjct: 240 EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127 K + + L + + + + ++ D+ + + Sbjct: 300 VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQIAILDYQERYHGDTW 359 Query: 128 TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 LAK Y + K++ +F D+ T ++L+ +R + + + Sbjct: 360 KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 417 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + Q+ +I L +FRS++++L+ + VF + + + + + Sbjct: 466 FQRYAQ----NPQEGRLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + ++ES E+ + R + I + Sbjct: 522 NTKLTPNPDNKAAFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L ++ Sbjct: 573 --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F F ED++ ++ Q+ E + +K N Sbjct: 621 VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + + A+ S +D I + + G Sbjct: 681 ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V +MT+H + Sbjct: 741 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631 KGLE P VF+++ + ++ + + ++ Sbjct: 801 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860 Query: 632 ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 861 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D+ + E T P Sbjct: 921 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + +TIK+ ++ K + + + I P + PS I + Sbjct: 981 QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I L + +T + Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097 Query: 822 KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S + ++D ++ G +D + + Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157 Query: 877 NIFIFEYKTHH 887 I +F+YKT Sbjct: 1158 KIVLFDYKTDR 1168 >gi|88658223|ref|YP_507207.1| ATP-dependent DNA helicase UvrD [Ehrlichia chaffeensis str. Arkansas] gi|88599680|gb|ABD45149.1| ATP-dependent DNA helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas] Length = 860 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 195/641 (30%), Positives = 302/641 (47%), Gaps = 41/641 (6%) Query: 39 METGNPTILKKAQTLQQASQTQCIEER--FSLLSSFFLTQKFTPQKNI---ITQEINKKS 93 + G+ K ++ L + S + + F+ +K+I IT++ S Sbjct: 222 LSEGSIRDKKISENLVKWSNLSQKYKLQKLNKYVKIFINLPSLEKKSISSIITKKTLTNS 281 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 P++++ + Q+E + F+T K+ + T+ + +AK Y++ K+K LD D+I Sbjct: 282 PEIEKIVSDIQEEILNFIKTFHTNKIAERTIHLIEIAKCFTKLYQQDKQKLNYLDHNDII 341 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +LLK WI + +D +I+HILIDE QD S+ QW +I L +FF G T Sbjct: 342 DLALNLLKNPTYKDWILFHLDSKIDHILIDESQDNSIKQWSIILQLCHEFFSGIGTTEEL 401 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 RTLF VGD KQSIY F A P +++T K ++ L SFRST IL + Sbjct: 402 RTLFIVGDIKQSIYGFQNARPDYFNPMCHYFTQQSTQY--KHKVLHLTQSFRSTPPILKL 459 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 VDKVF+ S TT I H R G V++W + +++ ++ F Sbjct: 460 VDKVFNNFCQEISFS---TTKIEHEIFRKNDPGYVEIWPIIDIKNNKN-------FSLDF 509 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 ++ + +LA IA I + I I K R I A D L+LVR R I + Sbjct: 510 ENRTDLDTNLLLASTIANKIHSWIINKRIL-LAKNRPITAGDFLILVRHRTC--FIDHVI 566 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 LK I + D+F + D+ I+DL+ LG F+L E+DL+ +LKSP+F F+E I Sbjct: 567 TSLK-KLDIPTLERDKFKIMDYTIIQDLVNLGEFLLLPENDLALTGLLKSPIFEFNEKQI 625 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 F + R ++E SKF + Y+ +LI ++Q SP + + I+ K Sbjct: 626 FDLAYNR-NNTYLWE-------ELQSKFSTISNYLKQLISVSQLHSPLNLYHHIISEHKH 677 Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 +F R G ++ EF+N ++ E ++ +SLQ I ++ P IK + + V+ Sbjct: 678 --KFTKRLGQSNTKIIGEFINLLIQCESHNINSLQAFIHWIKNTNPEIKSDINLTKDYVK 735 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 IMTVH AKG++SP+VFL DT + + + N+ Sbjct: 736 IMTVHNAKGMQSPIVFLSDTTT----------IPKSDTQLVFDEEYTPFWIRNDINDFCE 785 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 +L K + EY RLLYV MTRA D+L I S N+ Sbjct: 786 NLKSQQKTNEYNEYLRLLYVAMTRAEDELYITGISPIQNKS 826 >gi|55821688|ref|YP_140130.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus LMG 18311] gi|81560167|sp|Q5M2T7|ADDA_STRT2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|55737673|gb|AAV61315.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus LMG 18311] Length = 1217 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 145/1022 (14%), Positives = 321/1022 (31%), Gaps = 147/1022 (14%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L++ G++ ++ Y + +E + L + T Sbjct: 254 LRDHLGIA--------QREFAKAKYLNN---VSDAIILLEGSLINDQTDMEDLLKQLLTL 302 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKM 119 + + T+ + + NK + +L++ + + + Sbjct: 303 SGGTGLTNM-----TRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + + Y +AK + +F D+ +L++ + + Sbjct: 358 LPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPE---VAVSYRDRYHE 414 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QD S Q ++ L S+ F VGD KQSIY F A+P+ Sbjct: 415 VMVDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFND 463 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRH 297 + ++ + +I L +FRS +++L + VFS + + D T + Sbjct: 464 KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S + + E ++ D + E S + S + I + Sbjct: 520 GSQKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGEIS-------LVIKEIIKLH 572 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHL 416 ++ +DI +L R ++ I +V ++ + + L Sbjct: 573 EQG----------VRFEDITLLAPNRNTYLD----LMVSFEEHGIPLVPDEYKSSYLESL 618 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF--- 473 + ++ R I + +D + V +L+SP+FNF+EDD+ +I Q + + + + Sbjct: 619 EVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKS 678 Query: 474 -------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 +K + + + ++ S +D I + + Sbjct: 679 GLHPEVVMQGLEAKLTLFTETLADWRDYSKCHSIYDLIWKIYNDRFYYDYVGGLPRAEQR 738 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580 L E+ + L I +++ N V +MT+H + Sbjct: 739 QANLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVP-KNAVSLMTIHKS 797 Query: 581 KGLESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKS 627 KGLE VF++ + H + + L D + Sbjct: 798 KGLEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVL 857 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS---------------- 671 + + ++++ E RLLYV MTRA +L + + Sbjct: 858 ETLTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKETLTQQYGTDVENNRLP 917 Query: 672 ---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----L 724 ++ + + W + +F + ++ + + Sbjct: 918 VALRDQIATYQDWIMALDTAFMRKDLKFTVRFVEDEELTPEAIGQVEVKAAVDADDLSNN 977 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------------- 768 + E I++ + + +KL I+ P + PS + T + Sbjct: 978 RQTEEIERALTVLESVEKLNHLYAPAIDLPSVRTPSQLKTFYEPIMDTEGVDIMDKKEGV 1037 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 + G H+L+Q + ++ + Sbjct: 1038 QPLETASTFELPDFGQKTKVTGAAVGSATHELMQRLTLSDTVTLQDLTQAL--SRVSASD 1095 Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIIISGRIDQISI 873 + + L + + + ++ E + + K+D ++ G ID + Sbjct: 1096 QVKARVQLEKLLGFFDTELGKLILANRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLL 1155 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + I +F+YKT H + + Q+S+Y K L +Y + + LI + + Sbjct: 1156 LEDRIVLFDYKTDHFT--HPSELKTRYQGQMSLYAKALSQAYQMEKVDKYLILLGGKDLE 1213 Query: 934 II 935 ++ Sbjct: 1214 VV 1215 >gi|55823610|ref|YP_142051.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus CNRZ1066] gi|81558977|sp|Q5LY80|ADDA_STRT1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|55739595|gb|AAV63236.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus CNRZ1066] Length = 1217 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 146/1022 (14%), Positives = 321/1022 (31%), Gaps = 147/1022 (14%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L++ G++ ++ Y + +E + L + T Sbjct: 254 LRDHLGIA--------QREFAKAKYLNN---VSDAIILLEGSLINDQTDMEDLLKQLLTL 302 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKM 119 + + T+ + + NK + +L++ + + + Sbjct: 303 SGGTGLTNM-----TRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + + Y +AK + +F D+ +L++ + + Sbjct: 358 LPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPE---VAVSYRDRYHE 414 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QD S Q ++ L S+ F VGD KQSIY F A+P+ Sbjct: 415 VMVDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFND 463 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRH 297 + ++ + +I L +FRS +++L + VFS + + D T + Sbjct: 464 KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S + + E ++ D + E S + S + I + Sbjct: 520 GSQKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGEIS-------LVIKEIIKLH 572 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHL 416 ++ +DI +L R ++ I +V ++ + + L Sbjct: 573 EQG----------VRFEDITLLAPNRNTYLD----LMVSFEEHGIPLVPDEYKSSYLESL 618 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF--- 473 + ++ R I + +D + V +L+SP+FNF+EDD+ +I Q + + + + Sbjct: 619 EVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKS 678 Query: 474 -------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 +K + + + ++ S +D I + + Sbjct: 679 GLHPEVVMQGLEAKLTLFTETLADWRDYSKCHSIYDLIWKIYNDRFYYDYVGGLPRAEQR 738 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580 L E+ + L I +++ N V +MT+H + Sbjct: 739 QANLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVP-KNAVSLMTIHKS 797 Query: 581 KGLESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKS 627 KGLE VF++ + H + + L D + Sbjct: 798 KGLEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVL 857 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS---------------- 671 D + ++++ E RLLYV MTRA +L + + Sbjct: 858 ETLTFQDNRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKETLTQQYGTDVENNRLP 917 Query: 672 ---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----L 724 ++ + + W + +F + ++ + + Sbjct: 918 VALRDQIATYQDWIMALDTAFMRKDLKFTVRFVEDEELTPEAIGQVEVKAAVDADDLSNN 977 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------------- 768 + E I++ + + +KL I+ P + PS + T + Sbjct: 978 RQTEEIERALTVLESVEKLNHLYAPAIDLPSVRTPSQLKTFYEPIMDTEGVDIMDKKEGV 1037 Query: 769 -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 + G H+L+Q + ++ + Sbjct: 1038 QPLETASTFELPDFGQKTKVTGAAVGSATHELMQRLTLSDTVTLQDLTQAL--SRVSASD 1095 Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIIISGRIDQISI 873 + + L + + + ++ E + + K+D ++ G ID + Sbjct: 1096 QVKARVQLEKLLGFFDTELGKLILANRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLL 1155 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + I +F+YKT H + + Q+S+Y K L +Y + + LI + + Sbjct: 1156 LEDRIVLFDYKTDHFT--HPSELKTRYQGQMSLYAKALSQAYQMEKVDKYLILLGGKDLE 1213 Query: 934 II 935 ++ Sbjct: 1214 VV 1215 >gi|328946442|gb|EGG40582.1| exonuclease RexA [Streptococcus sanguinis SK1087] Length = 1224 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 150/1035 (14%), Positives = 327/1035 (31%), Gaps = 142/1035 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L ++ Sbjct: 228 HSDFAAERERIFSQIKSALWELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNELS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IE+ +L + + K + ++ N+ + E+L+ + Sbjct: 288 PIEQTAQILKQIVALSQLSNGQSFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L+ Sbjct: 348 LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRRFYQERYHEVMVDEYQDTNHTQECMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--EN 283 IY F A+P+ + + Q+ + +I L +FRS ++L + VF E Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + + T + + + L ++ + + ++ D ++ ++ Sbjct: 510 VGEIDYNETHYLVAGNPAKCEPNPANLASFLIYEGSKESLEEEG------DEGLPQAVSA 563 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 + I + + + KDI +L R L ++I Sbjct: 564 GEVDLVIKEIIRLHNEE---------GVAFKDITLLTASRT----RNDLILAAFEQHQIP 610 Query: 404 VVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 + +D + + ++ R I + +D + +LKSP+F+ ED++ ++ Q + Sbjct: 611 LAPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDLGEDELARLSLQASQ 670 Query: 463 TETVYEYIQKFAN--------------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + +K + K Q+ + + ++ S +D I Sbjct: 671 EHSQENLYEKLVHALQGRGLNSDLVTQELQKKLQYFHETLQSWRTYSKTHSLYDLIWKIY 730 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR---- 563 + G + L E++S+ L I +++ Sbjct: 731 QDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASV 790 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------- 615 + + VR+MT+H +KGLE VFL++ + + + Sbjct: 791 PVATPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGIGIKYVADVS 850 Query: 616 ----PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 851 VSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQE 910 Query: 672 -------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 + SN + W + F + + + Sbjct: 911 VLDKRQWGKSQQGRLSASLRNQLSNFQDWLYAIQAVFSDKNLAYETRFVTDKELTAEEIG 970 Query: 713 EWST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------ 762 + + + + I++ +D + + S ++ I P + PS I Sbjct: 971 QIKEPVLFPADDLADNRQTDDIRRALDILESVDRFNSQYRSAIELPSVRTPSQIKKFYEP 1030 Query: 763 ------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804 + + G +H+L+Q I + Sbjct: 1031 IMDTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRITLDS--RPSMA 1088 Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKK 860 + + A + + L I E + + S E + + + Sbjct: 1089 VLRSALAQVQADEAVKKQIQLSKIASFFETDLGRLLIENSDRVRREAPFAMLKRDEASGQ 1148 Query: 861 DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 + ++ G +D + + I +F+YKT + +E + + QL +Y + L SY + Sbjct: 1149 EFVLRGILDGYLLFEDRIILFDYKTDKY--KEPSELIARYHGQLDLYAQALSRSYGISQI 1206 Query: 921 VCLLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1207 EKYLILLGGEQLQVV 1221 >gi|291542614|emb|CBL15724.1| recombination helicase AddA, Firmicutes type [Ruminococcus bromii L2-63] Length = 1186 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 161/1002 (16%), Positives = 319/1002 (31%), Gaps = 137/1002 (13%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER------ 65 S I K +W + +++ + LK + LQ A + + + Sbjct: 200 SETDIEKTVWGKIIIDYALSAVLHGINLTENSILRLKDDEKLQDAVEPLLVGDLAYFTLV 259 Query: 66 --------FSLLSSFFL-------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF--I 108 + + + N I ++ ++KE +KK Q F Sbjct: 260 QLKFVSSSWDEIRQAIFSFETGRMKSPKGYKDNPIKISVSSNRDEVKETVKKLQSLFFWS 319 Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + R ++ + TL + + E K K +L F D+ T LL K D Sbjct: 320 EKDARLELSQLHRFISTLFTLVRAYDKKLSELKAKKNILSFADIESLTVKLLAKPDDDNG 379 Query: 169 I-----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 +I + +++DE QD + +Q + +S++ + LF VGD K Sbjct: 380 YTKTVQAQEISNRFDAVMVDEFQDVNDVQDLIFKSVS----------NDESNLFVVGDVK 429 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F A+P+ + K ++ + + I L +FRS ++ V+ +F Sbjct: 430 QSIYGFRQAKPEIFIERKNEYKRFNEENPEYPATIILDRNFRSRFEVCDAVNFIFERIMT 489 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + + + R V + + + Sbjct: 490 TESAKMEYNSDERL----------------VNGAEFPKSDDCNFEISLIESENSDLEKEE 533 Query: 344 ILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 I A+ IA I +MI + +G R + D +++R N+ I Sbjct: 534 IEAKYIADKIHDMINSGFRVKDGDIMREARYGDFAIILRSPSGKA---ATYVNTLNNSGI 590 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 ++ D + IK ++ L R I + D+ + +L SP++ F+ D++ Sbjct: 591 PAYSENKSSFFDAVEIKIMLNLLRVIDNPGIDIPLLSVLCSPMYAFTPDELAA-MRCESR 649 Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 ++Y + ++A K + + + L A S + ++ G Sbjct: 650 KSSLYSSVCEYA-KTNDKARKFVDELKILRDCACTNSVDALISKACEMTGFMSISLAVSG 708 Query: 523 NE-VIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIM 575 N+ + L+ + E N Y +L + IS + + + N VR++ Sbjct: 709 NDSALKNLELLREYARSFESNGYKTLSDFISYTDKLIANKTNLDASSQNEGDSANAVRVL 768 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 ++H +KGLE PV F+ D Q + + GI Sbjct: 769 SIHASKGLEFPVCFIADITHQFNKTDLRNDILL--DSKAGLGIKTQSNGVVYNTFPRLAT 826 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680 ++++ E R+LYV +TRA ++LI ++ + Sbjct: 827 GLKIEENLIAEEMRVLYVALTRAKEKLICVGAVKKCSDYLERLYSKLVSESVIEPYTVTS 886 Query: 681 ------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW-----------------STH 717 W + + ++ + S +W Sbjct: 887 CQSYCDWLCLCALVHPSLNNLRNDIMPGSKVIPHNGESDWKLQIIVDEKMIDKDNVFEDD 946 Query: 718 HPENTPLEREETIKQLMDEQKIPKK---LFSPIKNDINEPYILNPSTIDTKGK------- 767 L+ + D K+ KK ++ ++ P ++ S I Sbjct: 947 ITSINLLQVADVSDDTFDYAKLLKKNLDFKYRNRDILSLPQKVSASDIAHSQNGDYFEKI 1006 Query: 768 --TNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 L ++ RG HK LQ F I N ++ + Sbjct: 1007 LSKPLFIAEQNSAPVARGTAHHKFLQYCNFEQARASLDTEIDRLL--NDGKLTQEQVDMI 1064 Query: 825 LLSITR-LLENPMMTTAMSCD-SYSEVSVSGKINC-----------PKKDIIISGRIDQI 871 L ++ ++ E + ++ +II G +D Sbjct: 1065 DRKTLNEFLSTKLIDRIIASQLVMREKRFTARLKPSEVFDEYKDVKTDATVIIQGAVDLA 1124 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913 + + I +YKT ++I + + QL +Y+ ++ Sbjct: 1125 FVEDGKLVIVDYKTDRV--KDITKLAGLYKKQLDLYKSAMEQ 1164 >gi|325690487|gb|EGD32490.1| exonuclease RexA [Streptococcus sanguinis SK115] Length = 1224 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 157/1033 (15%), Positives = 328/1033 (31%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + L ++ Sbjct: 228 HSDFAAERERIFGQIKSALWELEAFFSAHLEHEGREFVGAKYQENVQDALTALAGLNELP 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 SIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L++ Sbjct: 348 LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VHRFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPAKREP-------NPANRASFLIYEGSKESLEEEADEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L ++I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQEH 672 Query: 465 TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +KF K QH + + + ++ S +D I Sbjct: 673 SQENLYEKFVNALEGRGLHPALVTQELQKKLQHFHETLQDWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEAL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + SN + W + F ++ + + Sbjct: 913 DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-- 768 + + + + I++ +D + +L S ++ I P + PS I + Sbjct: 973 NEPLFFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 769 ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + G +H+L+Q I + Sbjct: 1033 DTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + + ++ Sbjct: 1091 RSALTQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDASGQNF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT + + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYCGQLDLYAQALSRSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVV 1221 >gi|325687712|gb|EGD29733.1| exonuclease RexA [Streptococcus sanguinis SK72] Length = 1224 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 157/1033 (15%), Positives = 330/1033 (31%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L ++ Sbjct: 228 HSDFAAERERIFGQIKSSLWELETFFSAHLEHEGREFAGAKYQENVQDALTLLAGLNELS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 SIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L++ Sbjct: 348 LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRRFYQERYHEVMVDEYQDTNHTQECMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPAKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L ++I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672 Query: 465 TVYEYIQKFANCG--------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +K N K QH + + ++ S +D I Sbjct: 673 SQENLYEKLVNAHEGRGLNPALVTQELQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIIFSRTKGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEVL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + +N + W + F ++ + + Sbjct: 913 DKRQWGKSQQGRLSASLRSQLNNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-- 768 + + + + I++ +D + +L S ++ I P + PS I + Sbjct: 973 NEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 769 ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + G +H+L+Q I +++ + Sbjct: 1033 DTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPL--DNRPSMAVL 1090 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + ++ Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKQDEDSGQEF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT + + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYRGQLDLYAQALSRSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVV 1221 >gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551] gi|207743470|ref|YP_002259862.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum IPO1609] gi|83723579|gb|EAP70781.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551] gi|206594867|emb|CAQ61794.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum IPO1609] Length = 1177 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 160/976 (16%), Positives = 325/976 (33%), Gaps = 81/976 (8%) Query: 1 LKNRFGLSLNESY--ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-- 56 L + G + E + +VS + I A + Sbjct: 227 LDDLLGDDAHTDPLIEALQDAALLADMLRVSAWLGQGGAAEGKRAVQIETAATAARALDL 286 Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIR 111 S + F L + F TQ P+ T+ + K + L + + Sbjct: 287 SDAAARHDAFETLFTAFHTQAGKPRACKPTKALVKAIGEGNAQTLVDLHGTLCEALAAYH 346 Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 R + ++ A TL L Y+ K++ +DF DL L++ D +A+++ Sbjct: 347 ARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQV 406 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 ++D H+L+DE QDT+ +QW ++ + + G + T+F VGD KQSIY F Sbjct: 407 RLDARYKHLLLDEFQDTNPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRR 462 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + + +++ + R+ +L V+ VF + Sbjct: 463 ADARLFDAARDMLVAGF-----DATVLRTNRTRRNAPAVLEWVNAVFLQARARGDY---A 514 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 + + + L V + + +S R++A Sbjct: 515 IYAEQSTAVDAPAGQALLLPLVPVPEAVQTGETAPRDSLTEPREEAGDSQRYDEGRQVAA 574 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 + + + + NG +R ++ D +LVR+++ R D + + R Sbjct: 575 CLRALHAGERVRENGGERPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGG 630 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEY 469 L L DL AL F+++ + DL +L+SP+F ++DD+ + + T +E Sbjct: 631 LLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALAQTGEGASAPTWWER 690 Query: 470 IQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGN 523 + A + +H + + + +A HD I+ + ++++ R Sbjct: 691 LTALAGQPHAAAQLRHAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANRE 750 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRA---------------- 564 + + LD FL L + Y SL + ++EL Sbjct: 751 QALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDA 810 Query: 565 --HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 S + V+I+TVH +KGLE+P V L+D+ + + P Sbjct: 811 ELASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAF 870 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 ++ R L + E LLYV MTRA LI+ +N + Sbjct: 871 GKTAERGRARDPLFAQEAALAERENWNLLYVAMTRARQALIVSGVANKRDG--------- 921 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 +V ++ +T + + Sbjct: 922 --------AAAQVVDEGDVPEVDGSASWYTLLATAGVASPAPAAQADAGGDAVHAGPQAV 973 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKR 801 + + + + + N + D +G ++H +L+ + + Sbjct: 974 SYHDFRVPLTVTVRIGGTAERVADAPNAADAIFDQGAVAQGELLHAVLERLTRHGKPEQV 1033 Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861 + A + ++ R+L + + ++ P Sbjct: 1034 PDAAAIARWFGATGITDADAARAAEAVRRMLAAEALAHVFDAARFDVAHNEVELFSPDGA 1093 Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921 ++ RID++ + + +YK +P E + QL Y + YP +++ Sbjct: 1094 LL---RIDRLIERGDEVLVVDYKL-RLLPVE----RAAYADQLRGYVAAVAPMYPGRTVR 1145 Query: 922 CLLIYVSEPKVFIIPQ 937 + ++ + + Sbjct: 1146 AG-VATAQGEWIDLDA 1160 >gi|312867393|ref|ZP_07727602.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis F0405] gi|311097094|gb|EFQ55329.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis F0405] Length = 1221 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 161/989 (16%), Positives = 331/989 (33%), Gaps = 122/989 (12%) Query: 30 DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89 + + + G+ T + L + R S + + K+++T Sbjct: 269 YLEAVEEVLDQIGSLTGRINKEQLTSVLKAVVAISRASNGGALTNRARKEELKDLVTAYN 328 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLD 148 K+ + +L+ +++ ++ + + ++ L+ L + Y E K + + Sbjct: 329 QDKTIHI-NRLRDLENQLYQLEFQQSFHQEEGPMLSLLRDFIRDFARAYLERKIQEKAYE 387 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F D+ +L++ +R + + +++DE QDT+ Q ++ L Sbjct: 388 FGDISHFAIQILEQFPE---VRQAFQERYHEVMVDEYQDTNHTQERMLDLL--------- 435 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 S+ F VGD KQSIY F A+P+ + + Q+ G K +I L +FRS Sbjct: 436 --SNGCNRFMVGDIKQSIYRFRQADPQIFNDKFKAYQEE----GAKGRLILLKENFRSHV 489 Query: 269 DILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 ++L + VF E + + T + S + E ++ + Sbjct: 490 EVLDATNDVFRHLMDEEVGEIDYNQTHYLVAGSDKQRIAFPQHRAEFLLYDGSQDQEEKT 549 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386 E + +L + I + + K+I +L R Sbjct: 550 EDEEAPLGVETISKGEILL---VIKEILRLHR---------VEKVPFKEITLLTATRT-- 595 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + Y I +V + + L + ++ R I + D V ++KSP+ Sbjct: 596 --RNDAILEAFDQYHIPIVADSGQAHYLESLEVMVMLDTLRTINNPLHDYPLVALMKSPM 653 Query: 446 FNFSEDDIFKI--------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491 F+F ED++ +I + E E+ ++K ++ +K + Sbjct: 654 FDFDEDELARISLQTLPEQKQVAFYHKVQLALEKTAEHANLIDAKLLAKIENFLKVLSTW 713 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550 A+ S +D I + + G + L E+ S+ L Sbjct: 714 RAAAKTHSLYDLLWKIYEDRYYYDYVGALPNGAQRQANLYALTLRANDYEKASFKGLSRF 773 Query: 551 ISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 I+ +++ +A + V++MTVH +KGLE VF+++ + Sbjct: 774 IAMIDKVIENEHDLASVPLAAPKDAVQLMTVHKSKGLEFKYVFILNMDKAFNRKDQSGPI 833 Query: 607 HIMPSLNDDPGIPIWIP------------QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + +P + + ++ K +T E RLLYV Sbjct: 834 ILSRQKGLGFKYVANLPVETENPAAPESIRLQIETPCYQRNVEETKLATISEQMRLLYVA 893 Query: 655 MTRASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFH-------N 691 MTRA +L + K+ ++ D ++ Sbjct: 894 MTRAELKLYLVGKGREDKLRDTDWGTSRNGKLDPGKRKEWTSYQDWLFAIQDVFTKNTLA 953 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + + ++ E + E + + + + E I++ +D + +L I Sbjct: 954 YDTRFVTDEDLTPDQLEPLEREKDSRLDQLKDIRQSEDIRRALDILENVDRLNQLYAPAI 1013 Query: 752 NEPYILNPSTID---------------------TKGKTNLESLLSDNQTFNRGLIIHKLL 790 + P + PS I + + G +H+L+ Sbjct: 1014 HLPSVRTPSQIKKFYEPVMDANGVQIMDAKTVTPEFELPTFGQEKAVTGAQVGSAVHELM 1073 Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSE 848 Q + E + A+ K L +I E P+ T E Sbjct: 1074 QRVPLEEEITLDTLRQALEQVQAEPAVKARIK--LEAILAFYETPLGTLLQKEASRVRRE 1131 Query: 849 VSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906 + K +D ++ G +D + + I +F+YKT H+ + + QL + Sbjct: 1132 APFAMLKKDPASGEDFVVRGILDGYLVLEDRILLFDYKTDHYKV--PSQLVERYRDQLDL 1189 Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFII 935 Y + L+ SY K + L+ + P + ++ Sbjct: 1190 YAEALRRSYGKKQVEKYLVLLGGPHLEVV 1218 >gi|312863341|ref|ZP_07723579.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396] gi|311100877|gb|EFQ59082.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396] Length = 1217 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 154/1023 (15%), Positives = 325/1023 (31%), Gaps = 146/1023 (14%) Query: 13 YELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + + D F + + + L+ A + L Sbjct: 243 KDGLLADFLA---FLRDHLGLAQREFAKAKYLNNVSDAISLLEGALAN--DQTDMEDLLK 297 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY------------KM 119 LT +T+ +++ KE K+++EF+ +T + Sbjct: 298 QLLTLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + Y +AK + +F D+ +L++ + + + Sbjct: 358 LPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPE---VAVRYRDRYHE 414 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QD S Q ++ L S+ F VGD KQSIY F A+P+ Sbjct: 415 VMVDEYQDNSHTQERMLELL-----------SNGYNRFMVGDIKQSIYRFRQADPQIFNG 463 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRH 297 + ++ + +I L +FRS +++L + VFS + + D T + Sbjct: 464 KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S + + E ++ D E S + S + I + Sbjct: 520 GSEKQKEPHPENETEVLIYNSDEASVTPDEEGADQPISSGEIS-------LVIKEIIKLH 572 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHL 416 ++ +DI +L R ++ I +V ++ + + L Sbjct: 573 EQG----------VRFEDITLLAPTRNTYLD----LMASFEEHGIPLVPDEYKSSYLESL 618 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 + ++ R I + +D + V +L+SP+FNF+EDD+ +I Q + + + + Sbjct: 619 EVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLARIAVQDDKGQFYDKLLAAHTKS 678 Query: 477 G----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 G +K + + + +++ S +D I + S + Sbjct: 679 GLHPEVVTQGLDTKLTLFTETLVDWRDYSKWHSLYDLIWKIYDDRFYYDYVGSLPRAEQR 738 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTVHTAK 581 L E+ + L I ++ + A N V +MT+H +K Sbjct: 739 QANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVADLVPKNAVSLMTIHKSK 798 Query: 582 GLESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKSR 628 GLE VF++ + H + + L D + Sbjct: 799 GLEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQVNTNLPKLNVVLE 858 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS----------------- 671 + + ++++ E RLLYV MTRA +L + + Sbjct: 859 TLTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPV 918 Query: 672 --NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI----AYEWSTHHPENTPLE 725 ++ + + W + +F + ++ + + + + + Sbjct: 919 ALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELIPEAIGQVEVQAAVDADDLSNNR 978 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + E IK+ + + +KL I+ P + PS + T + Sbjct: 979 QTEEIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKTFYEPVMDTEGVDIMYKKEEVQ 1038 Query: 769 ----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818 + G H+L+Q + ++ + Sbjct: 1039 PLETTTSFELPDFGQKTKVTGAAVGSATHELMQRLILSDTVTLQDLTQAL--SRVSADDQ 1096 Query: 819 KEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISIS 874 + + L + + + + E + + K+D ++ G ID + Sbjct: 1097 VKARVQLEKLLGFFDTELGKLILVNRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLL 1156 Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 + I +F+YKT H I + Q+S+Y K L +Y + LI + + + Sbjct: 1157 EDRIVLFDYKTDHFT--YPSEIKERYTGQMSLYAKALSQAYQIDKIDKYLILLGGKNLEV 1214 Query: 935 IPQ 937 + Sbjct: 1215 VEA 1217 >gi|228995666|ref|ZP_04155329.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17] gi|228764043|gb|EEM12927.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17] Length = 747 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 124/726 (17%), Positives = 232/726 (31%), Gaps = 133/726 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K D + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILSGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K LA + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKQISIADPFEKLASDVYTEYQKRLLKNNSLDFDDLIMTTIHLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ ++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNRAQYILVNKLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIENNSNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDEIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVMDEIEHVGVSAKITKAVKEFASQLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF++ VF H Sbjct: 566 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 +++ +E RL YVG+TRA ++L + + ++N + + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELLEP 651 Query: 696 KKIKLT 701 Sbjct: 652 LNETAP 657 >gi|94311069|ref|YP_584279.1| DNA helicase/exodeoxyribonuclease V subunit A [Cupriavidus metallidurans CH34] gi|93354921|gb|ABF09010.1| UvrD/REP helicase [Cupriavidus metallidurans CH34] Length = 1187 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 179/995 (17%), Positives = 325/995 (32%), Gaps = 103/995 (10%) Query: 1 LKNRFGLSLNES--YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58 L G + + D W Q++ + + + I+ + ++ Sbjct: 226 LAQDLGDDATSDILVDALCDDDWLEECAQMALLLGRGGKTEQGHASKIIDGLRAIRAWRD 285 Query: 59 TQCIEER-----FSLLSSFFLTQKFTPQKNIITQEINK------KSPDLKEKLKKSQDEF 107 F LL + F T P+ T + K +L ++ + Sbjct: 286 AGAAPGEAAANAFQLLRAAFFTDAGKPRSLRRTTALAKVCGSEGAVDELLDQHAEHCARL 345 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +I R + LA L L Y+ K +DF DL L+ + + Sbjct: 346 DEIAARRCEAMVLAINLALYRLGDALLERYQRHKGDQRAMDFADLEWLAAKLMADEETAT 405 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 +++ ++D H+L+DE QDT+ +QW ++ + + G T+F VGD KQSIY Sbjct: 406 YLQVRLDARYRHLLLDEFQDTNPLQWRIL----QGWLAGYQGLGEKPTVFLVGDPKQSIY 461 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F A+ + + + Q + + ++L V+ VF Sbjct: 462 RFRRADARLFDAARVMLQDGFGATVLRTNRTRRN-----RPEVLDWVNAVFDHARAEGRY 516 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ----ESSAS 343 T T G G V L V + + + P+ +S Sbjct: 517 PLYETQTTALG----GPAGPVWLLPLVEPEEAEDDEASEGDGHRDTLTQPRTQKGDSLRY 572 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 RR+A + + + R +D+ +LVR++ R I Sbjct: 573 EEGRRVAAWLHYLRDQVPVREGDGTRPAGWRDMHLLVRRKTFLADYERAMRE----AGIP 628 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 + R L L DL AL F+++ E DL +LKSPL ++DD+ + E Sbjct: 629 CLSPRRGGLLTTLEALDLSALLAFLMTPESDLDLAHVLKSPLVGATDDDLVLLAMMEGEG 688 Query: 464 ETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI---- 518 + + + + +A HD I + R+++ Sbjct: 689 GWWARIEALGLPERVSDSLRTGVARLRGWLALAPHKPVHDLVDQIYHQGEVRRRYAEAAP 748 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY--------------------- 557 + +V+ LD FL +L + Y SL + I EL++ Sbjct: 749 AAIREQVLANLDAFLKLSLDLDGGRYPSLPKFIDELQEIRRGDEDESPDEGGMGEGVEDT 808 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 A + V I+TVH AKGLE+P V L+D + + P + P Sbjct: 809 EAESDDAADNQLDAVHILTVHAAKGLEAPFVILLDANHSDPAADRGGILVDWPPTSAVPR 868 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + R + L E LLYV MTRA L++ +++ + Sbjct: 869 HFSAYGKRDERGMARAPLFDAEAALADRENWNLLYVAMTRAQQGLLVSGIKGRASKAEKE 928 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737 ++ ++L + DE AY + +T E I+ Sbjct: 929 DAPGAEI--------AGSWYVRLAAAGVGDEITAYPETDVAAVDTLTAASERIRYTDFRL 980 Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 + + D E ++ D G ++H LL+ + P Sbjct: 981 RYRDAADDRLPID--------------DADDEAEGIVFDADAAAHGELVHALLERVSRYP 1026 Query: 798 EHK----RKNFITSYC------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847 + + + NA+ ++ + + + +LE P + M Sbjct: 1027 DAHGSLPDVETVLRWFPLTGAGAPNARERWRQQAEAAVADLRAMLEAPALRELMFPVDAV 1086 Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 ++ + ++ RID++ + + I +YK +PQE + QL Y Sbjct: 1087 SARNEVELYDGRGRLL---RIDRLVEFDERVVIIDYKL-RLLPQEHA----GYRTQLLRY 1138 Query: 908 EKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942 + +P K + V+ I L Sbjct: 1139 AAAVAPMFPGKRIEAG---VATAAGEWIDVELLRA 1170 >gi|148543293|ref|YP_001270663.1| recombination helicase AddA [Lactobacillus reuteri DSM 20016] gi|184152703|ref|YP_001841044.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112] gi|227364360|ref|ZP_03848453.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri MM2-3] gi|325683559|ref|ZP_08163075.1| exonuclease RexA [Lactobacillus reuteri MM4-1A] gi|251764530|sp|A5VHK2|ADDA_LACRD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764531|sp|B2G532|ADDA_LACRJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|148530327|gb|ABQ82326.1| Recombination helicase AddA [Lactobacillus reuteri DSM 20016] gi|183224047|dbj|BAG24564.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112] gi|227070673|gb|EEI09003.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri MM2-3] gi|324977909|gb|EGC14860.1| exonuclease RexA [Lactobacillus reuteri MM4-1A] Length = 1392 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 157/1071 (14%), Positives = 308/1071 (28%), Gaps = 167/1071 (15%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 ++ E + + + Q L Q Sbjct: 338 IAKEELLTELTTFSDQFTDLLSKATESQLDAKTVDSLQKDQQMMQELLDLLQPPTWNTIR 397 Query: 67 SLLSSFFLTQKFTPQKN-----IITQEINKKSPDLKEKLKKSQDEFIKIRD---RFNTYK 118 L ++ + K+ + + + +K++ + D F R+ R + Sbjct: 398 DLFANAKFARMGGKPKDDELAEEVYKSLGSARTGIKKQFDQLVDRFFNYREDQFRLISTH 457 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR---YKIDQ 175 + + Y++ K VL+F DL +L D + + Sbjct: 458 AQELLRELSAVTINFRRRYQQTKLNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQN 517 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+IDE QDT+ +Q ++ LT + LF VGD KQSIY F A+P Sbjct: 518 HYQEIMIDEYQDTNRLQESILMKLTS---------PERKNLFMVGDVKQSIYRFREADPT 568 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293 L + + ++ G I L +FRS ++ + + +F + + D Sbjct: 569 LFLGKYQNYRQ-----GSDGEAIVLGENFRSMTNVTSFTNILFEQLMDREVGEIDYDEDA 623 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +++ ++ + ++ V +D+ ++ D ++ + R I I Sbjct: 624 HLKYAATYYEENQDNKVHPTEVLLYDANALDPEK-----EDVEHEDDKLAGEFRMIGMRI 678 Query: 354 SNMIGTDTI---FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + +G+ IQ DI++L R + I N I + +D Sbjct: 679 KQMVENQELIFHPEDGQMHPIQYGDIVLLERTKA----INNSLMEEFNKLNIPLTVHDVE 734 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 ++ +M+L + I + + D+ V +L+SP+ + ++ I Q + Sbjct: 735 SYFQATEVRVMMSLLKIIDNPQQDIPLVAVLRSPIVGLTNQELAFIRLQNRSVDYYAALQ 794 Query: 471 QKFANCGISKFQH------------------VIKYIHELIHIAQFCSPHDFFTLILGAKK 512 +N +H + + AQ + D I Sbjct: 795 TFMSNYQRKALRHQSLLTSEQVNALYEKADHFLGLLRVFRQTAQQQTLVDLIWQIYDQTG 854 Query: 513 GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--- 568 G++ L EQ+S+ L + I +E+ K A Sbjct: 855 YLDYVGAMPGGHQRQANLHALYQRAHSYEQSSFKGLYQFIRFIEKMQEHDKDLGVAPTQL 914 Query: 569 -HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 N V +MT+H +KGL+ PVVFL+D + + Sbjct: 915 TANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAARENAVVDAVAGVGIRYMDDQRVIYD 974 Query: 628 RN---NIVSDLIKHLKKSTQE--------------------EYNRLLYVGMTRAS-DQLI 663 ++ ++ + + E R + + + Sbjct: 975 TPQRQAVIEEIQRGERAEDLRVLYVALTRAEQRLVITGSFNEEMRTQSLAGSWQRWQKAY 1034 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK-------IKLTNSINKDEWIAYEWST 716 K+ + + ++ D V + + L S D + + Sbjct: 1035 QSKNLLIGPQPRITANSFMDWVGLALARYPEFNAQQLSRGNVTLEESTLADTKVTGLAAD 1094 Query: 717 HH---------------------PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 H E+ T+ EQKI + L + + Sbjct: 1095 PHFTAKTYTALDVSDGLAKIGQNASANVTEKNNTVATDASEQKIEQILRYRYPHLVATKT 1154 Query: 756 ILNPSTIDTKGKTNLESLLS----------------------------------DNQTFN 781 S D K + Sbjct: 1155 TAYQSVTDVKRVFEDPDTRDMARWDYDQQQKVKTQGIYLNNNFDVPAFIQQTTHEPVATE 1214 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLS-ITRLLENPMMT 838 G H + Q + F+ K KL + I + + Sbjct: 1215 IGTATHLVFQKLPLDEGLINVEFVDQEIQKLVGEKLINPVVAARINREGIVAFYQTAVGQ 1274 Query: 839 TAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEYKTH 886 + D + EV S +N + I+I G ID + + I + +YK Sbjct: 1275 KILKHPADYHREVPFSMIMNGHELFKGVNVSDDERILIHGIIDGYLRTDEGIILVDYKND 1334 Query: 887 HHVPQ----EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 H ++ I + QL +Y++ L + L + + Sbjct: 1335 HLNKDYRDFDLARIKDRYRGQLELYKEALNLMEGIPVVQMGLYLLELGEFV 1385 >gi|324993970|gb|EGC25889.1| exonuclease RexA [Streptococcus sanguinis SK405] Length = 1224 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L ++ Sbjct: 228 HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L+ Sbjct: 348 LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R+ + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L Y+I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672 Query: 465 TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +K K QH + + ++ S +D I Sbjct: 673 SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + SN + W + F ++ + + Sbjct: 913 DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762 + + + + I + +D + +L S ++ I P + PS I Sbjct: 973 NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 763 ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + + G +H+L+Q I + Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + + ++ Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDASGQNF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT + + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYHGQLDLYAQALSRSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVV 1221 >gi|116510847|ref|YP_808063.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis subsp. cremoris SK11] gi|123025697|sp|Q033I1|ADDA_LACLS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116106501|gb|ABJ71641.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis subsp. cremoris SK11] Length = 1203 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 161/1032 (15%), Positives = 308/1032 (29%), Gaps = 150/1032 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54 G +S + +D + + + S+ G IL L Sbjct: 207 GFETYKSLTDLSEDFTVNVKENLLTFFELLENSLTNGVIAKKGAGRDKANLILDNKNELL 266 Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112 +A + +L S + K+ + K K+ L S+ + ++R Sbjct: 267 EAISKKDFVTFTALFLSIDTDIRVGSSKDETLSALKKDFSAQKQDLVGSKSKPGELRKFV 326 Query: 113 ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + F+ Y E KK ++ D+ ++L++ Sbjct: 327 DKIKHGQLIEKYQKQAFEIASDLQKFIIEFYKTYLERKKNENAFEYSDIAHFAIEILEEN 386 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 IR + + + I+IDE QDTS Q ++ L S+ LF VGD K Sbjct: 387 PD---IRENLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F A+P L + + + +I L +FRS ++L + +F + Sbjct: 433 QSIYGFRLADPGLFLEKYKSYDQA----ENPNQLIRLKENFRSRGEVLNFTNDIFKHLMD 488 Query: 284 AQGLSEDSTTTIRHRSSRIGQ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + I + +++ ++ + E + Sbjct: 489 EKLGEMTYGKEKALVQGNISDYPVEAEKDFYPELLLYKENTSEEEIED--------SEVK 540 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 + + A I +I + ++ KDI +LVR + + I + Y Sbjct: 541 ISDGEIKGAAQEIKKLIESG----------VEPKDIAILVRSKSNNNKIEDIL----LSY 586 Query: 401 KISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 I V+ R + + ++ + R I + DLS V ML+SPLF F+ED++ +I Q Sbjct: 587 DIPVILDEGRVDFLKSMEVLIMLDILRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISVQ 646 Query: 460 RHETETVYEYIQKFANCG-----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 ++ I K + + E + H I Sbjct: 647 GSRDLRFWDKILLSLKKEGKNPELINLSLEQKLKAFNQKFTEWRKLVNQIPIHRLLWKIY 706 Query: 509 GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKR 563 + + G L E + Y L + + +EQ Sbjct: 707 TETYYFDYVGALKNGEMRQANLQALSVRAESYESSGYKGLFKFVRLINKFMEQNNDLASV 766 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 N VR+MT H +KGLE VFL++ S+ + + + + Sbjct: 767 NIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSREHGLGMKYIADLK 826 Query: 624 QSKSRNNIVSDL------------IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 +++ E R+LYV TRA +L + + Sbjct: 827 AEPDVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKDT 886 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIK-------------------------LTNSINK 706 ++K + + +D+ + + Sbjct: 887 DKKAGLELYDTATLEGKILSDKFRNSSRGFQHWILALQNATKLPMKLNVYTKDELETEKL 946 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + ++ E+ + + + E + P + I PS + + Sbjct: 947 EFTSQPDFKKLVEESEKFDNIMSFSDEIKEAQKIMNYQYPHQAATELSSIQTPSQVKKRS 1006 Query: 767 KTNL---------------------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 + G H +Q + + Sbjct: 1007 YEKQLQVGEVQPVSEFVRVKNLDFSDFGSKKITAAEIGSATHSFMQYADFS----QADLF 1062 Query: 806 TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKK 860 + T + + K + + I L + + E S K+ Sbjct: 1063 SFQATLDEMGFDEKIKNQIDITKILTLFDTEFGKFLSENVDKTVKEAPFSMLRTDEFAKE 1122 Query: 861 DIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 I+ G D I +F+YKT I I + Q+++Y + L+ +Y Sbjct: 1123 QYIVRGICDGFVKIADKIILFDYKTDRFTNVSAISEIKERYKDQMNLYSEALQKAYHVNQ 1182 Query: 920 LVCLLIYVSEPK 931 + LI + P+ Sbjct: 1183 IDKYLILLGGPR 1194 >gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [Ralstonia solanacearum GMI1000] gi|17428204|emb|CAD14892.1| probable homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum GMI1000] Length = 1177 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 160/958 (16%), Positives = 330/958 (34%), Gaps = 82/958 (8%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 + D+ + + T + A+ L S F L + F Sbjct: 247 AALLADMLRVSGWLGQG--GAAEGKRAVQIETAVTAARAL-DLSDAAARRHAFEALFTAF 303 Query: 74 LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 TQ P+ T+ + K + L + + + R + ++ A T Sbjct: 304 HTQAGKPRACKPTKALVKAIGEDAAQTLADLHAVLCEALAVYQARRHESRVRAINAALFT 363 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L L Y+ K++ +DF DL L++ D +A+++ ++D H+L+DE QDT Sbjct: 364 LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +QW ++ + + G + T+F VGD KQSIY F A+ + + + Sbjct: 424 NPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFEAARDMLVAAF 479 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +++ + R+ +L V+ VF + + + + VG Sbjct: 480 -----DATVLRTNRTRRNAPAVLEWVNAVFLLARARGDYPIYAEQSTAVDAP----VGRA 530 Query: 309 QLWEQVVSQHDSQCNP-QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 L V +Q + + +S R++A + + + + NG Sbjct: 531 LLLPLVPVPEAAQADETAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGA 590 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +R ++ D +LVR+++ R D + + R L L DL AL F Sbjct: 591 ERPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDF 646 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISK--FQH 483 +++ + DL +L+SP+F ++DD+ + T +E + A+ + ++ Sbjct: 647 LMTPQADLPLAHVLRSPIFAVTDDDLIALAQAGEGASAPTWWERLAALADRPHAAAQWRR 706 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRN 539 + + + +A HD I+ + ++++ R + + LD FL L Sbjct: 707 AHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDL 766 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH---------------------NEVRIMTVH 578 + Y SL + ++EL + + V+I+TVH Sbjct: 767 DGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDAELASEGLDAVQILTVH 826 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE+P V L+D+ + + P + P ++ R L Sbjct: 827 ASKGLEAPFVVLLDSHHSDTRADTVGILIDWPPGAEAPAHFSAFGKAAERGRARDPLFAQ 886 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E LLYV MTRA LI+ +N + + V + Sbjct: 887 EATLAERENWNLLYVAMTRARQALIVSGVANKRDG----------------AAAQAVDEG 930 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 + + W + P+E + + + + Sbjct: 931 DVPDVDGSASWYTLLATAGAATPAPVEAAAGAGGADHAAS-QAVAYHDFRVPLTVTVRIG 989 Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817 + + + D +G ++H +L+ + + + A Sbjct: 990 GAVERVADAPDTADAIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAAIARWFGATGIT 1049 Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877 + ++ R+L + + ++ P ++ RID++ Sbjct: 1050 DADAARATEAVRRMLAAEALAHVFDPARFDVAHNEVELFSPDGALL---RIDRLIERGDE 1106 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + + +YK +P E + QL Y + YP +++ + ++ + + Sbjct: 1107 VLVVDYKL-RLLPVE----RAAYADQLRGYAAAVAPIYPGRAVRAG-VATAQGEWIDL 1158 >gi|206968237|ref|ZP_03229193.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134] gi|228950847|ref|ZP_04112970.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068047|ref|ZP_04201355.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185] gi|229077650|ref|ZP_04210280.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2] gi|229188562|ref|ZP_04315601.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876] gi|206737157|gb|EDZ54304.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134] gi|228594751|gb|EEK52531.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876] gi|228705591|gb|EEL57947.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2] gi|228715055|gb|EEL66922.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185] gi|228808776|gb|EEM55272.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 753 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 120/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + ++ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNVDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + ++ +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|229176883|ref|ZP_04304279.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W] gi|228606556|gb|EEK63981.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W] Length = 749 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 120/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + ++ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNVDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + ++ +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|229003295|ref|ZP_04161125.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4] gi|228757913|gb|EEM07128.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4] Length = 747 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 123/726 (16%), Positives = 231/726 (31%), Gaps = 133/726 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K D + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILSGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKQISIADPFEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIHLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ ++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNRAQYILVNKLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIENNSNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDEIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVMDEIEHVGVSAKITKAVKEFASQLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF++ VF H Sbjct: 566 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 +++ +E RL YVG+TRA ++L + + ++N + + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELLEP 651 Query: 696 KKIKLT 701 Sbjct: 652 LNETAP 657 >gi|225870333|ref|YP_002746280.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi 4047] gi|225699737|emb|CAW93495.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi 4047] Length = 1213 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 152/1015 (14%), Positives = 326/1015 (32%), Gaps = 129/1015 (12%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 +++ + + + + K + L+ F Sbjct: 237 PDQAVDALLACMQDTADQLRDLTDMEGYAQTTKAGKLTAKYTKHLKMIDSLYEWALHFDS 296 Query: 69 LSS-FFLTQKFTPQKNIITQEIN-KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L L Q ++ + + K Q++ ++ R + +L Sbjct: 297 LYGKARLGQLAQELTALLPSGADITVAGHKYPIFKSLQEQLVRFRHLETILAYQQESLPL 356 Query: 127 LTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L + + Y AK + +F D+ ++L++ + IR + +++ Sbjct: 357 LEVLQAFVISFSEAYLAAKMQENAFEFSDIAHFAIEILQQ---APDIRQAYQGHYHEVMV 413 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q ++ L S+ F VGD KQSIY F A+P+ ++ + Sbjct: 414 DEYQDNNHMQERLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 Q + +I L +FRS +++L V + VFS + + + Sbjct: 463 DYQSNPEH----GKLILLKENFRSQSEVLNVTNAVFSRLMDESLGEITYDDKHQLVAGSE 518 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 GQ + +D+ + D + +A I + + Sbjct: 519 GQRQPYPNNRAQLLLYDTDQVQEGTEEALANDGISAGEVI-----LVAKEIIRLYNEE-- 571 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421 + +DI +LV R I + N Y I V + + + + Sbjct: 572 -------KVAFEDITLLVSSRTRNDTIFQVF----NQYGIPLVADGGQENYLKSVEVMVM 620 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA------- 474 + R I + +D + V +++SP+F+F ED + +I Q + + K + Sbjct: 621 LDTLRSINNPLNDYALVALMRSPMFSFDEDQLARISLQGSSQKQPQAFYDKLSNSLRGQG 680 Query: 475 -------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI 526 ++K + + A+ S ++ I + S+ + Sbjct: 681 EHPELIGQELMTKLADFDGTLRDWRQFAKLHSLYELIWKIFNDRFYFDFVASQPKAEQAQ 740 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 L + EQ+ Y L I LE + V +MT+H +KG Sbjct: 741 ANLYALAIRADQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVERPKHAVNLMTIHKSKG 800 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQSKSRNNI 631 LE VF+++ + + + + + Sbjct: 801 LEFHYVFILNCDKRFAMADLQAPIILNRDEGIGIKYVANVKELLREEKLASLKVTMETLP 860 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SN 672 + L+ +T E RLLYV MTRA ++ + ++ S Sbjct: 861 YQLNKQQLRLATLSEQMRLLYVAMTRAEKKVYLIGKASKEKVQEKTADNSSEGRLALASR 920 Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREE 728 E+ + + W + +F ++ ++ + + + + + E Sbjct: 921 ERLLSFQDWLLAIAATFSKEDLFIDVRFVDDSDLTPEAVGQLRPSGLLQADDLKDNRQTE 980 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768 I + +D +L + + I P + PS + T + Sbjct: 981 DIARALDMLDKVSELNASYQAAIELPTVRTPSQLKTLYEPLMDTDGVDIIDQPYHRPKTF 1040 Query: 769 --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-L 825 S + G +H+L+Q I + + + A+ L + Sbjct: 1041 ELPDFSKKKAVEPSQVGSSLHELMQRIPMSDQVTAGDIEQTL---QLVSADAEVKARLDI 1097 Query: 826 LSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880 +T + + + E + K + ++ ++ G ID + + I + Sbjct: 1098 EKVTSFFATTELGQLLQEHHQRLHREAPFAMLKKDSLSQEQYVVRGIIDGYLLFEDRIVL 1157 Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 F+YKT + Q+ + + Q+ +Y + L SY + L+ + ++ ++ Sbjct: 1158 FDYKTDRY--QQSAELKQRYQQQMDLYAEALSQSYGIARIEKYLVLMGGSQLEVV 1210 >gi|207723138|ref|YP_002253537.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum MolK2] gi|206588331|emb|CAQ35294.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum MolK2] Length = 1177 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 160/976 (16%), Positives = 324/976 (33%), Gaps = 81/976 (8%) Query: 1 LKNRFGLSLNESY--ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-- 56 L + G + E + +VS + I A + Sbjct: 227 LDDLLGDDAHTDPLIEALQDAALLADMLRVSAWLGQGGAAEGKRAVQIETAATAARALDL 286 Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIR 111 S + F L + F TQ P+ T+ + K + L + + Sbjct: 287 SDAAARHDAFETLFTAFHTQAGKPRACKPTKALVKAIGEGSAQTLVDLHGTLCEALAAYH 346 Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 R + ++ A TL L Y+ K++ +DF DL L++ D +A+++ Sbjct: 347 ARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQV 406 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 ++D H+L+DE QDT+ +QW ++ + + G + T+F VGD KQSIY F Sbjct: 407 RLDARYKHLLLDEFQDTNPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRR 462 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + + +++ + R+ +L V+ VF + Sbjct: 463 ADARLFDAARDMLVAGF-----DATVLRTNRTRRNAPAVLEWVNAVFLQARARGDY---A 514 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 + + + L V + + +S R++A Sbjct: 515 IYAEQSTAVDAPAGQALLLPLVPVPEAVQTGETAPRDSLTEPREEAGDSQRYDEGRQVAA 574 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 + + + + NG +R ++ D +LVR+++ R D + + R Sbjct: 575 CLRALQAGERVRENGDERPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGG 630 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEY 469 L L DL AL F+++ + DL +L+SP+F ++DD+ + + T +E Sbjct: 631 LLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALAQTGEGASAPTWWER 690 Query: 470 IQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGN 523 + A + +H + + + +A HD I+ + ++++ R Sbjct: 691 LTALAGQPHAAAQLRHAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANRE 750 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRA---------------- 564 + + LD FL L + Y SL + ++EL Sbjct: 751 QALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDA 810 Query: 565 --HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 S + V+I+TVH +KGLE+P V L+D+ + + P Sbjct: 811 ELASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAF 870 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 ++ R L + E LLYV MTRA LI+ +N + + Sbjct: 871 GKTAERGRARDPLFAQEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAVDEG 930 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 D+ +T + + Sbjct: 931 DVPEVDGSASWY-----------------TLLATAGVASPAPAAQADAGGDAVHAGPQAV 973 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKR 801 + + + + + N + D +G ++H +L+ + + Sbjct: 974 SYHDFRVPLTVTVRIGGTAERVADAPNAADAIFDQGAVAQGELLHAVLERLTRHGKPEQV 1033 Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861 + A + ++ R+L + + ++ P Sbjct: 1034 PDAAAIARWFGATGITDADAARAAEAVRRMLAAEALAHVFDAARFDVAHNEVELFSPDGA 1093 Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921 ++ RID++ + + +YK +P E + QL Y + YP +++ Sbjct: 1094 LL---RIDRLIERGDEVLVVDYKL-RLLPVE----RAAYADQLRGYVAAVAPMYPGRTVR 1145 Query: 922 CLLIYVSEPKVFIIPQ 937 + ++ + + Sbjct: 1146 AG-VATAQGEWIDLDA 1160 >gi|228989471|ref|ZP_04149456.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442] gi|228770196|gb|EEM18775.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442] Length = 747 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 124/726 (17%), Positives = 232/726 (31%), Gaps = 133/726 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K D + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILSGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKQISIADPFEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIHLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ ++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNRAQYILVNKLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIENNSNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDEIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVMDEIEHVGVSAKITKAVKEFASQLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + A EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPAAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF++ VF H Sbjct: 566 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 +++ +E RL YVG+TRA ++L + + ++N + + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELLEP 651 Query: 696 KKIKLT 701 Sbjct: 652 LNETAP 657 >gi|227543760|ref|ZP_03973809.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri CF48-3A] gi|300908827|ref|ZP_07126290.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112] gi|227186259|gb|EEI66330.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri CF48-3A] gi|300894234|gb|EFK87592.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112] Length = 1392 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 160/1071 (14%), Positives = 307/1071 (28%), Gaps = 167/1071 (15%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 ++ E + + + Q Q Sbjct: 338 IAKEELLTELTTFRDQFTALLSKATESQLDAKTVDSLQKDQQMMQEFLDLLQPPTWNTIR 397 Query: 67 SLLSSFFLTQKFTPQKN-----IITQEINKKSPDLKEKLKKSQDEFIKIRD---RFNTYK 118 L ++ + K+ + + + +K++ + D F R+ R + Sbjct: 398 DLFANAKFARMGGKPKDDELAEEVYKSLGSTRTGIKKQFDQLVDRFFNYREDQFRLISTN 457 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR---YKIDQ 175 + + Y++ K VL+F DL +L D + + Sbjct: 458 AQELLRELSAVTINFRRRYQQTKLNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQN 517 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 I+IDE QDT+ +Q ++ LT + LF VGD KQSIY F A+P Sbjct: 518 HYQEIMIDEYQDTNRLQESILMKLTS---------PERKNLFMVGDVKQSIYRFREADPT 568 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293 L + + ++ G I L +FRS ++ + + +F + + D Sbjct: 569 LFLGKYQNYRQ-----GNDGEAIVLGENFRSMTNVTSFTNILFEQLMDREVGEIDYDEDA 623 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +++ ++ + ++ V +D+ D ++ + R I I Sbjct: 624 HLKYAATYYEENQDNKVHPTEVLLYDANALD-----PEKEDVEHEDDKLAGEFRMIGMRI 678 Query: 354 SNMIGTDTI---FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + +G+ IQ DI++L R + I N I + +D Sbjct: 679 KQMVENQELIFHPEDGQMHPIQYGDIVLLERTKA----INNSLMEEFNKLNIPLTVHDVE 734 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 ++ +M+L + I + + D+ +L+SP+ + ++ I Q + Sbjct: 735 SYFQATEVRVMMSLLKIIDNPQQDIPLAAVLRSPIVGLTNQELAFIRLQNRSVDYYAALQ 794 Query: 471 QKFANCGISKFQH------------------VIKYIHELIHIAQFCSPHDFFTLILGAKK 512 N H + + AQ + D I Sbjct: 795 SFMGNYQRKALHHQSLLTSEQVSALYEKADHFLGLLRVFRQTAQQQTLVDLIWQIYDQTG 854 Query: 513 GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--- 568 G++ L EQ+S+ L + I +E+ K A Sbjct: 855 YLDYVGAMPGGHQRQANLHALYQRAHSYEQSSFKGLYQFIRFIEKMQEHDKDLGVAPTQL 914 Query: 569 -HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP------SLNDDPGIPIW 621 N V +MT+H +KGL+ PVVFL+D + + DD + Sbjct: 915 TANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAVRENTVVDAVAGVGIRYMDDQRVIYD 974 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEE-----YNRLLYVGMTRASDQ---LIICKHSNT--- 670 PQ ++ + + RL+ G + L+ Sbjct: 975 TPQRQAVIEEIQRGERAEDLRVLYVALTRAEQRLIITGSFNEEMRTQSLVGSWQRWQKAY 1034 Query: 671 -------SNEKKSNQRTWYDMVYDSFHNDER-----------------VKKIKLTNSINK 706 + + ++ D V + + K+T Sbjct: 1035 QSKNLLIGPQPRITANSFMDWVGLALARYPEFNAQQLSRGNVTLEKSTLADTKVTGLAAD 1094 Query: 707 DEWIAYEWSTHH-----------PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 +IA ++ E+ T+ EQKI + L + + Sbjct: 1095 PHFIAKTYTALDVSDGLAKIGQNASANVTEKNNTVATDASEQKIDQILRYRYPHLVATKT 1154 Query: 756 ILNPSTIDTKGKTNLESLLS----------------------------------DNQTFN 781 S D K + Sbjct: 1155 TAYQSVTDVKRVFEDPDTRDMARWDYDQQQRVKTQGIYLNNNFDVPAFIQQTTHEPVATE 1214 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKN-AKLWPAKEYKNLLLS--ITRLLENPMMT 838 G H + Q + F+ K K + I + + Sbjct: 1215 IGTATHLVFQKLPLDEGPINVEFVDQEIQKLVGKKLINPVVAARINRKGIVDFYQTEVGQ 1274 Query: 839 TAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEYKTH 886 + D + EV S +N + I+I G ID + + I + +YKT Sbjct: 1275 KILKHPADYHREVPFSMIMNGHELFKGVNVSDDERILIHGIIDGYLKNDEGIVLVDYKTD 1334 Query: 887 HHVPQ----EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 H ++ I + QL +Y++ L + L + + Sbjct: 1335 HLNKDYRDFDLARIKDRYRGQLELYKEALNLMEGIPVVQMGLYLLELGEFV 1385 >gi|15893037|ref|NP_360751.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7] gi|15620238|gb|AAL03652.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7] Length = 822 Score = 334 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 173/621 (27%), Positives = 297/621 (47%), Gaps = 39/621 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K+++++E+ +K P L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L +F + ++F VGD+KQSI+SF GA+ + + T Sbjct: 357 PSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 NA +KF I L S+RS +IL V ++ S + SS G+V Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPGLFLSNNPL--ISSFRTHQGSVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V S+ ++ W D +S+A +L +I I I ++ I + R Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTAHR 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + + K+ V +DR L ++L I DL++L +F+L Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ SE ++++ + E +S + + + Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI I + +FF L++ R+ + ++ D+++E L + + +SLQ Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ E IKR + +++R+MTVH +KGLE+P+V L D+ + S Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLEAPIVILCDSTTLPISSNKF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798 Query: 670 TSNEKKSNQRTWYDMVYDSFH 690 SN+ + + WY++ + Sbjct: 799 -SNKSTTPENCWYEIAKQTCD 818 >gi|326803610|ref|YP_004321428.1| putative ATP-dependent nuclease subunit A [Aerococcus urinae ACS-120-V-Col10a] gi|326650337|gb|AEA00520.1| putative ATP-dependent nuclease subunit A [Aerococcus urinae ACS-120-V-Col10a] Length = 919 Score = 334 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 151/932 (16%), Positives = 295/932 (31%), Gaps = 135/932 (14%) Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEIN 178 ++ A + L + + + LDF+ + + T +L Sbjct: 6 YRLAAAIVYLCQLFIDRMQAEMFEEKQLDFQAIELYTYQILSPTDPDKNEALLYYQSRFK 65 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +++DE QD + +Q +I++++++ F VGD KQSIY F A+PK + Sbjct: 66 EVMVDEYQDVNGLQEAIIQAVSQEDRSY--------NRFMVGDVKQSIYRFRYADPKLFM 117 Query: 239 REKRI---NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + + ++ + I L +FRS +IL+ V+ VFS + + D + Sbjct: 118 DKYQRYANFDEQTPPFEEPSYRINLAENFRSRPEILSFVNFVFSQLMDEKIGGVDYLSEG 177 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + + + + + E + DS + S + A IA I++ Sbjct: 178 QLSVGATWYP------DLEGYETEVLLVEENEDYRQSLDSNQELSRTELQAEVIAQKITS 231 Query: 356 MIGTDTIFSNG------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 ++ + K R + DI++L R + Y I ++ + + Sbjct: 232 LMQKGFKIYDKDATSEDKMRPLCYSDIVILGSNRT----FYQDLENIFTQYDIPIMQDKK 287 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468 I ++ L + I + D+ +L+SP+ +E ++ KI E Sbjct: 288 QNYFQRTEIMTMVGLLKLIDNPYQDIPLAAVLRSPIIGLTEPEMAKIRIAEREGTYFEAV 347 Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRF 521 + + N ++K Q ++ ++ + S I Sbjct: 348 QSYVESHQNEKDNDLLNKLQQLLDWLQFWRSFTKEHSIAQLIWQIYQDTGYLDYVSGMTN 407 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMT 576 G + L E+N + L + I +E + + N N V++MT Sbjct: 408 GLQRESNLHGLYKRAYDFEENQFRGLFQFIRFIEKMQEREKDLESPQTIDLNQNTVQLMT 467 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 VH +KGLE PVVF + ++ I + + N I Sbjct: 468 VHASKGLEFPVVFYFNMAKGFNVDDLKNELLINDQIGIGVKVRDRFNGISYSNPIRLLAE 527 Query: 637 KHLKKSTQEEYNRLLY------------VGMTRASDQLIICKHSNTSNEKKSN------- 677 + + E R LY VG T A D+ + +K+ Sbjct: 528 HYERLELSAEEQRKLYVALTRAEQKLYLVGATEARDKSFDQWIKWANLSQKNQVIDESLR 587 Query: 678 -----QRTWYDMVYDSFHNDERVK--------------------KIKLTNSINKDEWIAY 712 + + + I++ N A+ Sbjct: 588 AISNQSDNIQKWIGTAIARHPDFRNKSHYDQAPQSSYQSVTTDFHIQVVNEEELLTHTAF 647 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI-----------------KNDINEPY 755 + PE +E E +++ L+ + + Sbjct: 648 QNIQLAPEKASVEGENAQTEIISSPLDYDYLYQEASQTSSYQSVSELKRLFEEPEDGRQM 707 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR------------GLIIHKLLQVIFTLPEHKRKN 803 S ++ L S G +H LLQ + + Sbjct: 708 QWRYSNSQSEAVQGLRFTPSHYPAPEFIQSQAVHSPSEHGSAVHLLLQAMDLKAMPSFDS 767 Query: 804 FITSYCTKNAKLWPAK--EYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKIN--- 856 SY AK + + L + E PM + Y E S + Sbjct: 768 LSESYKDLVAKGLLEESSLSEADLQQLLAFFETPMGKRIIHPKSQVYREQPFSYLLPYRQ 827 Query: 857 -------CPKKDIIISGRIDQISISQ-QNIFIFEYKTHH----HVPQEIEHIPYTHIAQL 904 P ++I G ID I + +++F+YKT H ++ + + + Q+ Sbjct: 828 LKSSTGLTPNDKVLIHGIIDGFLIDENDQVWLFDYKTDHIGYLPAKEQRQTLLKRYRVQM 887 Query: 905 SIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 S+Y+K L + + +LI + + F++ Sbjct: 888 SLYKKALTSIL-ERPVDYAVLIALDSLETFLV 918 >gi|2909716|gb|AAC12966.1| exonuclease RexA [Lactococcus lactis subsp. cremoris MG1363] Length = 1173 Score = 334 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 157/1011 (15%), Positives = 302/1011 (29%), Gaps = 138/1011 (13%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ-QASQTQCIEE 64 G +S + +D + + + + T ++ +E Sbjct: 207 GFETYKSLTDLSEDFTVNVKENLLTFFELLEAISKKDFVTCTALFLSIDTDIRVGSSKDE 266 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 S L F QK + +K D + ++ +++ + F+ Sbjct: 267 ALSALKKDFSAQKQDLVGSKSKPGELRKFVDKI--------KHGQLIEKYQN-QAFEIAS 317 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 Y E KK ++ D+ ++L++ IR + + + I+IDE Sbjct: 318 DLQKFIIDFYKTYLERKKNENAFEYSDIAHFAIEILEENPD---IRENLREHYDEIMIDE 374 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDTS Q ++ L S+ LF VGD KQSIY F A+P L + + Sbjct: 375 YQDTSHTQERMLELL-----------SNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKSY 423 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + +I L +FRS ++L + +F + + I Sbjct: 424 DQA----ENPNQLIRLKENFRSRGEVLNFTNDIFKHLMDEKLGEMTYGKEEALVQGNISD 479 Query: 305 ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + +++ ++ + E + + + A I +I Sbjct: 480 YPVEAEKDFYPELLLYKENTSEEEIED--------SEVKISDGEIKGAAQEIKKLIEYG- 530 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKD 420 ++ KDI +LVR + + I + Y I VV R + + Sbjct: 531 ---------VEPKDIAILVRSKSNNNKIEDIL----LSYDIPVVLDEGRVDFLKSMEVLI 577 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--- 477 ++ + R I + DLS V ML+SPLF F+ED++ +I Q ++ I Sbjct: 578 MLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISVQGSRDLRFWDKILLSLKKEGKN 637 Query: 478 --------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 K + + E + H I + + G Sbjct: 638 PELINLSLEQKLKAFNQKFTEWRKLVNKIPIHRLLWKIYTETYYFDYVGALKNGEMRQAN 697 Query: 529 LDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584 L E + Y L + + +EQ N VR+MT H +KGLE Sbjct: 698 LQALSVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLE 757 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS------------RNNIV 632 VFL++ S+ + + + + Sbjct: 758 FDYVFLMNLQSRFNDRDLKEDVILSREHGLGMKYIADLKAEPDVITDFPYALVKMETFPY 817 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 +++ E R+LYV TRA +L + +++K + + +D Sbjct: 818 MVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKDTDKKAGLELYDAATLEGKILSD 877 Query: 693 ERVKKIK-------------------------LTNSINKDEWIAYEWSTHHPENTPLERE 727 + + + + ++ E+ + Sbjct: 878 KFRNSSRGFQHWILALQNATKLPMKLNVYTKDELETEKLEFTSQPDFKKLVEESEKFDNI 937 Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL----------------- 770 + + E + P + I PS + + Sbjct: 938 MSFSDEIKEAQKIMNYQYPHQAATELSSIQTPSQVKKRSYEKQLQVGEVQPVSEFVRVKN 997 Query: 771 ----ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-L 825 + G H +Q + + + T + + K + + Sbjct: 998 LDFSDFGPKKITAAEMGSATHSFMQYADFS----QADLFSFQATLDEMGFDEKIKNQIDI 1053 Query: 826 LSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881 I L + + E S K+ I+ G D I +F Sbjct: 1054 TKILTLFDTEFGQFLSENVDKTVKEAPFSMLRTDEFAKEQYIVRGICDGFVKLADKIILF 1113 Query: 882 EYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 +YKT I I + Q+++Y + L+ +Y + LI + P+ Sbjct: 1114 DYKTDRFTNVSAISEIKERYKDQMNLYSEALQKAYHVNQIDKYLILLGGPR 1164 >gi|327463228|gb|EGF09549.1| exonuclease RexA [Streptococcus sanguinis SK1] Length = 1224 Score = 334 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L ++ Sbjct: 228 HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L+ Sbjct: 348 LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R+ + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L Y+I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672 Query: 465 TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +K K QH + + ++ S +D I Sbjct: 673 SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + SN + W + F ++ + + Sbjct: 913 DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762 + + + + I + +D + +L S ++ I P + PS I Sbjct: 973 NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 763 ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + + G +H+L+Q I + Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + + ++ Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDSSGQNF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT + + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELLARYHGQLDLYAQALSRSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVV 1221 >gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans] gi|133737857|emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB [Herminiimonas arsenicoxydans] Length = 1096 Score = 334 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 159/946 (16%), Positives = 318/946 (33%), Gaps = 108/946 (11%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 E E+ + V+ I ++ + G+ ++A +++A + E F+ L Sbjct: 238 GEDAEVDARLALWSDEKTVARI-GQIAWLLGQGSAVNQERATAIEKALSSGAALENFAAL 296 Query: 70 SSFFLTQKFTPQKNIITQEINKKS---------PDLKEKLKKSQDEFIKIRDRFNTYKMF 120 ++ F +KN T+++ K + + + + I R + Sbjct: 297 TNEFFDANGKFRKNRTTKDLTKALLGNLGDEGVYAFEVEFEAVGEALKTILRRSMEPAVI 356 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 A T+ Y+ K + V DF DL LL + +A+++ ++D H+ Sbjct: 357 ALNRALFTVGAAYLETYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYRHV 416 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ +QW ++++ + + ++F VGD KQSIY F AEP+ Sbjct: 417 LLDEFQDTNPLQWSIVQA----WLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAA 472 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 K + + + + R+ A I+ V++ F Q +++ Sbjct: 473 KETLVAQGADFLRT------NQTRRNAAGIVDVLNASFVANPIYQP-----------QTT 515 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 G V V + + +E + + Sbjct: 516 LEQSPGAVWQLPLVQQDKQEKVVWSPVQLRDPLTTPREEEEDAR-----RLEEGRAVALA 570 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + + + + + D+++LV+KR R I + R L + L + D Sbjct: 571 ILQARKELKSERWSDVMLLVKKRTHLRAYERALRE----AGIPFASDKRGGLLESLEVAD 626 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 L+AL F+++ D+L+ +LKSP+ +D++ + +R E + Sbjct: 627 LIALLNFLITPHDNLALAHVLKSPIMAAGDDELIAL-AERREKTWWLRLQAEVTELSSPA 685 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFT 536 + + +H+A HD IL ++ +V+ ++ F Sbjct: 686 LLRAAGLLEKWLHLAPRLPVHDLLDRILHEGDVVARYAQTASPLVRGQVLGNIEAFTELA 745 Query: 537 LRNEQNSYSSLQELISELEQ------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 L + Y SL + I L + + A + VRI+T+H AKGLE+P+V L Sbjct: 746 LNLDAGRYPSLPKFIDALRRLQKSADSDAPDEADIDAALDAVRILTIHGAKGLEAPIVVL 805 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +D + + + P D P + R L ++ Q+E L Sbjct: 806 LDANHSDGARDDVGVLCAWPQDRDAPTHFSVFGRQAERGAARDTLFAEEEQLKQQEDWNL 865 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV TRA + LI+ ++ + N + W Sbjct: 866 LYVATTRAKNLLIVSGVADN--------------------------RSTTVNGVADGRWY 899 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 A + P + + + P S+ + Sbjct: 900 ARFQGAQPVQ--PDAQAAAAAATGETEFFLPIFNPPALPAPQIEPTAIFSSAEIDE---- 953 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN-LLLSIT 829 G+ +H L++++ P + + L E + + Sbjct: 954 ------------GIALHALMELL--TPPQAWPITMHAPALIAKWLACTHEMAETISGQAS 999 Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 +L P + + ++ R D+ + ++I +YK Sbjct: 1000 VILAQPELARFFDPAQHRFARNEMEVVSSAG----VARFDRAVMFDDELWILDYK----- 1050 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +E + AQL Y + +P+ + LI + ++ + Sbjct: 1051 RNLLESERAAYAAQLERYRVAAQQVFPDVRIRSGLI-TVDGRLTEL 1095 >gi|327470754|gb|EGF16210.1| exonuclease RexA [Streptococcus sanguinis SK330] Length = 1224 Score = 334 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 146/1035 (14%), Positives = 326/1035 (31%), Gaps = 142/1035 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDI----NKYVSLSMETGNPTILKKAQTLQQAS 57 + F ++ I LW L F + + ++ + L L + S Sbjct: 228 HSDFAAERERIFDQIKSALWELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAVLNELS 287 Query: 58 QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDR 113 + + + + + + ++ ++ + +++ + + Sbjct: 288 SIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347 Query: 114 FNTYKMFKSTLA--------SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 + Y E KK +F D+ ++L ++ Sbjct: 348 LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEIL---EI 404 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 405 FPEVRRFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--EN 283 IY F A+P+ + + Q+ + +I L +FRS ++L + VF E Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + + T + + + L ++ + ++ D ++ ++ Sbjct: 510 VGEIDYNETHYLVAGNPAKCEPNPANLASFLIYEGSKDSLEEEG------DEGLPQAVSA 563 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 + I + + + KDI +L R L ++I Sbjct: 564 GEVDLVIKEIIRLHNEE---------GVAFKDITLLTASRT----RNDLILAAFEQHQIP 610 Query: 404 VVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 + +D + + ++ R I + +D + +LKSP+F+ ED++ ++ Q + Sbjct: 611 LAPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDLGEDELARLSLQASQ 670 Query: 463 TETVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + +K K QH + + ++ S +D I Sbjct: 671 EHSQENLYEKLVNALEGRGLNSDLVTQELQKKLQHFHETLQSWRTYSKTHSLYDLIWKIY 730 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR---- 563 + G + L E++S+ L I +++ Sbjct: 731 QDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASV 790 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 791 PVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVANVS 850 Query: 616 ----PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 851 VSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQE 910 Query: 672 -------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 + +N + W + F ++ + + Sbjct: 911 ALDKRQWGKSQQGRLSASLRSQLNNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIG 970 Query: 713 EWST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 + + + + + I++ + + +L S ++ I P + PS I + Sbjct: 971 QINEPVLFPADDLADNRQSDDIRRALYILESVDQLNSQYRSAIELPSVRTPSQIKKFYEP 1030 Query: 769 ------------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804 + G +H+L+Q I Sbjct: 1031 IMDTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMA 1088 Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKK 860 + + A + + L I E + + S E + + + Sbjct: 1089 VLRSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKQDEDSGQ 1148 Query: 861 DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 + ++ G +D + + I +F+YKT + +E + + +QL +Y + L SY + Sbjct: 1149 EFVLRGILDGYLLFEDRIILFDYKTDKY--KEPSELIARYRSQLDLYAQALSRSYGISQI 1206 Query: 921 VCLLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1207 EKYLILLGGEQLQVV 1221 >gi|255657915|ref|ZP_05403324.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544] gi|260850107|gb|EEX70114.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544] Length = 1283 Score = 334 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 144/1018 (14%), Positives = 306/1018 (30%), Gaps = 152/1018 (14%) Query: 34 YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93 Y + E + Q +++ L F I + K Sbjct: 282 YRTALAEKKAGGWDALCAAAKGWKQPVLRGKKYEALRDAFPD---------IRKAFEKSR 332 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT---LAKYLNAHYEEAKKKNCVLDFE 150 + K+ ++D ++ + + + L + AKK+ VLDF Sbjct: 333 DEAKKIFTDARDRYLAEMEASVLEDIRACSATVRRYVDLTTAFIDALQAAKKERNVLDFS 392 Query: 151 DLIINTNDLLKKRDVS------------------AWIRYKIDQEINHILIDEVQDTSLIQ 192 DL +L + + + ++ I++DE QDT+ +Q Sbjct: 393 DLEHFALAVLCRDSEALAGASEADFRGERGKALRTDAAEDLREKYAVIMVDEYQDTNGVQ 452 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ + F VGD KQSIY F A+P + + A Sbjct: 453 EAILNLIA-----------RADNRFTVGDVKQSIYRFRLADPYLFQAKYDAYPE-NPGAE 500 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI------GQVG 306 +I + +FRS A++L ++ +F + + + R G Sbjct: 501 DMDQLITMKQNFRSRAEVLAPINFIFDQVMTREAMEIEYDEKSRLYPGASYPEAEHTLKG 560 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTS-YFDSLPQESSASILARRIAYTISNMIGTDTIF-- 363 ++L + + + ++ + + + A+ IA I+ ++ + Sbjct: 561 PMELDIILRGEPEQPVEGLSQAADAGDETGGEELEGFELEAQHIADRIAGLMESGYRVFD 620 Query: 364 -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 G R + +DI VL+R K L I + + ++ ++ Sbjct: 621 KDAGGYRPLAYRDIAVLLRAVKGKAN---TLLELLRKNSIPAYADVDGGYFEANEVRLVL 677 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---- 478 AL + I + ++ +L SP+ F+ +++ ++ + + ++ + Sbjct: 678 ALLKTIDNARQEIPLAAVLVSPIGGFTMEELARLRMSVPDEDLFGALLRSHSPETPLEEG 737 Query: 479 --SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535 + ++ A S + + + G L + Sbjct: 738 LADRAADFCASLNRWRSYAVSHSVPELIWKLYRETGYYDYVGGLKGGLLRQANLRMLADR 797 Query: 536 TLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ +Y L + LE ++ R A+ + VRIM++H +KGLE PVV + Sbjct: 798 AAEYEKTNYRGLFRFLRFLEDLRKRDTDLSVARTLGASEDVVRIMSIHKSKGLEFPVVIV 857 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI--PQSKSRNNIVSDLIKHLKKSTQEEYN 648 D + L P + + + + T+ E Sbjct: 858 ADIAKGFNQLDARGTFLLHKELGIGPRLVERSTVGRQMYDTLPYQAIGARIVAETKAEEM 917 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSN---------------------QRTWYDMVYD 687 R+LYV MTRA ++LI+ + +K ++ D + Sbjct: 918 RVLYVAMTRAREKLILTGTLAAAKWEKQAARYARSLDSRELALPDDMIREADSYLDWIAP 977 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ---------- 737 + I+ ++ E + H L E + E+ Sbjct: 978 AVARHTDGAPIREAAGVDWGEMLDAVEPAAHFAVNLLSAEAIQPREEQEELDATLQSVRE 1037 Query: 738 -------------KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL---------- 774 + + + S I + +L Sbjct: 1038 GRALPASPERELVEKRLSWHYDAEELPGITAKMTVSEIKQRFAESLREDEPAALPVAPAA 1097 Query: 775 -------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 RG ++H +LQ + + R+ A + Sbjct: 1098 PPVWRRPQFLQQKGRLSPAERGTLMHSILQNLDLHGDLTREGLRAQVARMEVTGMIAAGH 1157 Query: 822 KNLL--LSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPK---------KDIIISGRID 869 ++ + SI ++ + + E+ S I + + I + G ID Sbjct: 1158 EDAVNYTSIESFCQSSLGQRMQQAVRVWRELPFSRMIPVGEVNPTYAGSSEKIFVQGVID 1217 Query: 870 QISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + + +YKT E I + Q+ +Y + ++ K + +++ Sbjct: 1218 VLFEEADGSLILLDYKTDR--DTTPEKIRRHYAKQIELYREAVESIV-GKEVKESILF 1272 >gi|229055131|ref|ZP_04195559.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603] gi|228721207|gb|EEL72736.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603] Length = 743 Score = 333 bits (854), Expect = 6e-89, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K + L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITTADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLASRF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + +I + I Sbjct: 335 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMIEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFGRIINMPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|229131293|ref|ZP_04260195.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196] gi|229165271|ref|ZP_04293058.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621] gi|228618096|gb|EEK75134.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621] gi|228652179|gb|EEL08114.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196] Length = 743 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K + L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITTADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLASRF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TENQIGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + +I + I Sbjct: 335 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMIEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFGRIINMPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|324994711|gb|EGC26624.1| exonuclease RexA [Streptococcus sanguinis SK678] Length = 1224 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L ++ Sbjct: 228 HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L+ Sbjct: 348 LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R+ + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L Y+I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672 Query: 465 TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +K K QH + + ++ S +D I Sbjct: 673 SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + SN + W + F ++ + + Sbjct: 913 DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762 + + + + I + +D + +L S ++ I P + PS I Sbjct: 973 NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 763 ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + + G +H+L+Q I + Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + + ++ Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDSSGQNF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT + + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELLARYHGQLDLYAQALSRSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVV 1221 >gi|327489960|gb|EGF21749.1| exonuclease RexA [Streptococcus sanguinis SK1058] Length = 1224 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 158/1033 (15%), Positives = 326/1033 (31%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L ++ Sbjct: 228 HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L+ Sbjct: 348 LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R+ + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L Y+I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672 Query: 465 TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +K K QH + + ++ S +D I Sbjct: 673 SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + SN + W + F + + + Sbjct: 913 DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDKNLAYETRFVTDEELTAEEIGRI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762 + + + + I + +D + +L S ++ I P + PS I Sbjct: 973 NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 763 ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + + G +H+L+Q I + Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + + ++ Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDSSGQNF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT + + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELLARYHGQLDLYAQALSRSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVV 1221 >gi|319939427|ref|ZP_08013787.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus 1_2_62CV] gi|319811413|gb|EFW07708.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus 1_2_62CV] Length = 1226 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 164/1036 (15%), Positives = 329/1036 (31%), Gaps = 142/1036 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + F + + L+ L F + N+ + L + Sbjct: 228 RADFQEEKAQLLAQTKEALFDLEEFFHYHLANEAKEFPKAKYLENVQSVLDCLVSLQEQS 287 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-----------EKLKKSQDEFIK 109 E + L + + K + ++ ++ + L+ D F + Sbjct: 288 SEEAYLTALDRIVEISRASNGKALTNSGRKEELKEIISTYNEKRKEKIQVLRNLADRFYR 347 Query: 110 IRDRFNTYK-MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + ++ + L K Y KK+ +F D+ +L++ Sbjct: 348 FEFQVTYHEEAREILLVLQRFMKAFVESYLNRKKEENAFEFADISHFAIQILEEFPD--- 404 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 +R+ + + +++DE QDT+ Q ++ L S+ F VGD KQSIY Sbjct: 405 VRHFYRTKYHEVMVDEYQDTNHTQERMLELL-----------SNGHNRFMVGDIKQSIYR 453 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F A+P+ + + Q Q+ +I L +FRS ++L + VF + + Sbjct: 454 FRQADPQIFNEKFKTYQDD----SQQGKLIVLKENFRSHVEVLEATNDVFKRLMDEEVGE 509 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 D T + + ++ +D + + +SI A Sbjct: 510 IDYNETHYLVAGNPDKKEPNPQYQTEFLIYDGT--------LETNNEENDKDVSSISAGE 561 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I +I + + +D+ +L R + Y I VV + Sbjct: 562 VALVIKEIIR------LNNEENVPFEDMTLLTASRT----RNDVILSEFAKYGIPVVSDG 611 Query: 409 R-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 + + ++ R I + +D + V +LKSP+F F+ED++ ++ Q+ TE Y Sbjct: 612 GEDNYLQSVEVMVMLDTLRTINNPLNDYALVALLKSPMFTFTEDELARLALQKKVTEANY 671 Query: 468 EYIQKFANCG-------------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 Q+ + K Q + + + A+ S +D I Sbjct: 672 IIHQENLYEKLKNALSGHGQHPELITPPLLKKIQQFQEILLDWREFAKINSLYDLLWKIY 731 Query: 509 GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKR 563 + + G L E+ S+ + I LE Sbjct: 732 QDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGVSRFIGMIDKILETQNDLASV 791 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------- 615 +A + VR+MTVH +KGLE VFL++ + + Sbjct: 792 VVAAPKHAVRLMTVHKSKGLEFKYVFLLNMDKVFNRKDSSSALILSRQNGVGIKYVADVV 851 Query: 616 ----PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + + + + ++ E RLLYV MTRA +L + Sbjct: 852 VDAADELAPNHVRLSIDTLPYVQNEREIHLASISEQMRLLYVAMTRAERKLYLVGKGRQE 911 Query: 672 NEKKSNQRT-------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 + +K W + F D+ + + Sbjct: 912 SLEKKTFPAPENGRLAASIRQTMTSFQDWIWALQTVFEKDDLAFSTQFVTDSDLTSEKIG 971 Query: 713 E----WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------ 762 + + E I++ +D + +L + + I+ P + PS I Sbjct: 972 QLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEP 1031 Query: 763 -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 T + + + G +H+L+Q I Sbjct: 1032 IMDTDGVEIMEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAVHELMQRIPLNQLPTIAI 1091 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPK 859 + A+ K+ L I E + + + Y E + + Sbjct: 1092 LKETLAQVQAEETVKKKID--LQKIASFFETELGQLLLKQADKVYREAPFAMLKQDQASG 1149 Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 +D ++ G +D + I +F+YKT + + + AQL++Y + L+ SY + Sbjct: 1150 QDFVVRGILDGYLLLADRIVLFDYKTDQYT--NPSELVGRYQAQLALYAEALRRSYGIEK 1207 Query: 920 LVCLLIYVSEPKVFII 935 + L+ + ++ ++ Sbjct: 1208 IEKYLVLLGGVQLQVV 1223 >gi|218231540|ref|YP_002365134.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264] gi|218159497|gb|ACK59489.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264] Length = 753 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + ++ +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|325696015|gb|EGD37906.1| exonuclease RexA [Streptococcus sanguinis SK160] Length = 1224 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 157/1033 (15%), Positives = 331/1033 (32%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L +++ Sbjct: 228 HSDFAAERERIFGQIKSSLWELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNESS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 SIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L+ Sbjct: 348 LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRRFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGKNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPTKREP-------NPANRASFLIYEGSKESPEEEGDEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L ++I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQEH 672 Query: 465 TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +K K QH + + ++ S +D I Sbjct: 673 SQENLYEKLVNALEGRGLNPALVTQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEESYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEAL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + SN + W + F ++ + + + Sbjct: 913 DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGQI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762 + + + + I++ +D + +L S ++ I P + PS I Sbjct: 973 NEPLFFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 763 ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + + G +H+L+Q I + + Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDG--RPSMAVL 1090 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + + ++ Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDASGQNF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT ++ + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKT--VKYKDSSELIARYRGQLDLYAQALSRSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVV 1221 >gi|34581275|ref|ZP_00142755.1| ATP-dependent helicase [Rickettsia sibirica 246] gi|28262660|gb|EAA26164.1| ATP-dependent helicase [Rickettsia sibirica 246] Length = 822 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 174/621 (28%), Positives = 298/621 (47%), Gaps = 39/621 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ T +K+++++E+ +K P L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGTKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L +F + ++F VGD+KQSI+SF GA+ + + T Sbjct: 357 PSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 NA +KF I L S+RS +IL V ++ S + SS G+V Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPGLFLSNNPL--ISSFRTHQGSVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V S+ ++ W D +S+A +L +I I I ++ I + R Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + + K+ V +DR L ++L I DL++L +F+L Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ SE ++++ + E +S + + + Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI I + +FF L++ R+ + ++ D+++E L + + +SLQ Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ E IKR + +++R+MTVH +KGLE+P+V L D+ + S Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798 Query: 670 TSNEKKSNQRTWYDMVYDSFH 690 SN+ + + WY++ + Sbjct: 799 -SNKSTTPENCWYEIAKQTCD 818 >gi|163938296|ref|YP_001643180.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4] gi|163860493|gb|ABY41552.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4] Length = 747 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K + L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITTADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLASRF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TENQIGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + +I + I Sbjct: 339 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMIEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFGRIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gi|300072981|gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 1158 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 167/938 (17%), Positives = 333/938 (35%), Gaps = 85/938 (9%) Query: 32 NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91 +++ + G +A ++ A E F L S F K P+KN + + Sbjct: 270 ASQLAILLGQGGSANQARAVAIESALSAGPALEHFDALYSQFFDDKDKPRKNGKVKSLLA 329 Query: 92 KSPDLKEKLKKSQ------------DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 E + + + K++ R + + A T + A Y+E Sbjct: 330 ALVQHFEASEDAALVAFEMEFNAVGEALRKLQGRSKEKDVLQLNAALFTAGRAYLACYQE 389 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K + VLDF DL LL+ +A+++ ++D HIL+DE QDT+ +QW ++R Sbjct: 390 VKAEQRVLDFADLEWQAYRLLRNEASAAYLQTRLDARYKHILLDEFQDTNPLQWCIVRC- 448 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 + ++ ++F VGD KQSIY F AEP+ + + + + Q +I+ Sbjct: 449 ---WLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFVAAREMLRA------QGAAILR 499 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSE------DSTTTIRHRSSRIGQVGTVQLWEQ 313 + R+ ++ V+++ F + N + + V + Sbjct: 500 ANQTRRNATAVVDVLNRSFVMGGNPLFAQQTTLGLAGGEVWRLPLARPDDGAENVSSADT 559 Query: 314 VVSQHDSQCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + P+ W + ++ + +A + + R Sbjct: 560 DAASAAPEGEPEVIPWRNPLTTPRGEEDDARRLLEGLALAQALLKAYREVPVVEGKGARS 619 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ DI++LVRKR R I + + R L + L I DL+AL F+++ Sbjct: 620 MRWGDIMLLVRKRTHLAAYESALRA----AGIPFISDKRGGLLESLEIADLIALLTFLIT 675 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI----SKFQHVIK 486 D + +LKSP+ + ++DD+ +I + + E + + Q A + + Sbjct: 676 PNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWRQLQAMQQEGAASAALVRAVT 735 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLRNEQN 542 + + A HD +IL + ++ + + + F+ +L + Sbjct: 736 LLQRWLLAAPHLPVHDLLDMILHQGELVARYAQHASPLTRSQTLGNIAAFVELSLNMDAG 795 Query: 543 SYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 Y SL + I L + + A+ + VRI+TVH+AKGLE+PVV ++D Sbjct: 796 RYPSLPKFIDALRVLQRSAGGDAPDEASVDASGDAVRILTVHSAKGLEAPVVAILDANHS 855 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 ++ + P D P + R + L + + +E LLYV +T Sbjct: 856 DSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVT 915 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA L++ + T + + S Sbjct: 916 RAKQLLLVSGVAGTRGA-------------------------DAGGVVQGSWYQRLFASD 950 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776 E + E++ LF P ++ D + L Sbjct: 951 APVREISEEAVHGAEAAAIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVS 1010 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 + G+ +H LL+ + + ++ A+ + + +L P Sbjct: 1011 TDAIDEGVALHALLERLTHG-HAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQ 1069 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + + + +I P + + D++ + +++ +YK + ++ Sbjct: 1070 LERFFNPALHRWARNEMEIVTPNGLMRL----DRVVMFDDELWVIDYK-----RRLLDSE 1120 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 + AQL Y L + +K + LI +E + Sbjct: 1121 RADYAAQLGRYRSALMSVFSDKQIRSALI-TAEGALIE 1157 >gi|125622886|ref|YP_001031369.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|251764529|sp|A2RH77|ADDA_LACLM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|124491694|emb|CAL96613.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|300069624|gb|ADJ59024.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris NZ9000] Length = 1203 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 162/1032 (15%), Positives = 307/1032 (29%), Gaps = 150/1032 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54 G +S + +D + + + S+ G IL L Sbjct: 207 GFETYKSLTDLSEDFTVNVKENLLTFFELLENSLTNGVIAKKGAGRDKANLILDNKNELL 266 Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112 +A + +L S + K+ + K K+ L S+ + ++R Sbjct: 267 EAISKKDFVTCTALFLSIDTDIRVGSSKDEALSALKKDFSAQKQDLVGSKSKPGELRKFV 326 Query: 113 ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + F+ Y E KK ++ D+ ++L++ Sbjct: 327 DKIKHGQLIEKYQNQAFEIASDLQKFIIDFYKTYLERKKNENAFEYSDIAHFAIEILEEN 386 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 IR + + + I+IDE QDTS Q ++ L S+ LF VGD K Sbjct: 387 PD---IRENLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F A+P L + + + +I L +FRS ++L + +F + Sbjct: 433 QSIYGFRLADPGLFLEKYKSYDQA----ENPNQLIRLKENFRSRGEVLNFTNDIFKHLMD 488 Query: 284 AQGLSEDSTTTIRHRSSRIGQ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + I + +++ ++ + E + Sbjct: 489 EKLGEMTYGKEEALVQGNISDYPVEAEKDFYPELLLYKENTSEEEIED--------SEVK 540 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 + + A I +I ++ KDI +LVR + + I + Y Sbjct: 541 ISDGEIKGAAQEIKKLIEYG----------VEPKDIAILVRSKSNNNKIEDIL----LSY 586 Query: 401 KISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 I VV R + + ++ + R I + DLS V ML+SPLF F+ED++ +I Q Sbjct: 587 DIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISVQ 646 Query: 460 RHETETVYEYIQKFANCG-----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 ++ I K + + E + H I Sbjct: 647 GSRDLRFWDKILLSLKKEGKNPELINLSLEQKLKAFNQKFTEWRKLVNKIPIHRLLWKIY 706 Query: 509 GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKR 563 + + G L E + Y L + + +EQ Sbjct: 707 TETYYFDYVGALKNGEMRQANLQALSVRAESYESSGYKGLFKFVRLINKFMEQNNDLASV 766 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 N VR+MT H +KGLE VFL++ S+ + + + + Sbjct: 767 NIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSREHGLGMKYIADLK 826 Query: 624 QSKSRNNIVSDL------------IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 +++ E R+LYV TRA +L + + Sbjct: 827 AEPDVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKDT 886 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIK-------------------------LTNSINK 706 ++K + + +D+ + + Sbjct: 887 DKKAGLELYDAATLEGKILSDKFRNSSRGFQHWILALQNATKLPMKLNVYTKDELETEKL 946 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + ++ E+ + + + E + P + I PS + + Sbjct: 947 EFTSQPDFKKLVEESEKFDNIMSFSDEIKEAQKIMNYQYPHQAATELSSIQTPSQVKKRS 1006 Query: 767 KTNL---------------------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 + G H +Q + + Sbjct: 1007 YEKQLQVGEVQPVSEFVRVKNLDFSDFGPKKITAAEMGSATHSFMQYADFS----QADLF 1062 Query: 806 TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKK 860 + T + + K + + I L + + E S K+ Sbjct: 1063 SFQATLDEMGFDEKIKNQIDITKILTLFDTEFGQFLSENVDKTVKEAPFSMLRTDEFAKE 1122 Query: 861 DIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 I+ G D I +F+YKT I I + Q+++Y + L+ +Y Sbjct: 1123 QYIVRGICDGFVKLADKIILFDYKTDRFTNVSAISEIKERYKDQMNLYSEALQKAYHVNQ 1182 Query: 920 LVCLLIYVSEPK 931 + LI + P+ Sbjct: 1183 IDKYLILLGGPR 1194 >gi|238650390|ref|YP_002916242.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic] gi|238624488|gb|ACR47194.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic] Length = 822 Score = 333 bits (853), Expect = 8e-89, Method: Composition-based stats. Identities = 173/621 (27%), Positives = 297/621 (47%), Gaps = 39/621 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K+++++E+ +K P L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L +F + ++F VGD+KQSI+SF GA+ + + T Sbjct: 357 PSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 NA +KF I L S+RS +IL V ++ S + SS G+V Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPSLFLSNNPL--ISSFRTHQGSVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V S+ ++ W D +S+A +L +I I I ++ I + R Sbjct: 472 VWPLVTSEKQ-----EELFWALPKDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + + K+ V +DR L ++L I DL++L +F+L Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ SE ++++ + E +S + + + Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI I + +FF L++ R+ + ++ D+++E L + + +SLQ Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ E IKR + +++R+MTVH +KGLE+P+V L D+ + S Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798 Query: 670 TSNEKKSNQRTWYDMVYDSFH 690 SN+ + + WY++ + Sbjct: 799 -SNKSTTPENCWYEIAKQTCD 818 >gi|228919227|ref|ZP_04082597.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840334|gb|EEM85605.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 753 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 120/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + ++ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNVDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + ++ +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|313890533|ref|ZP_07824161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN 20026] gi|313121050|gb|EFR44161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN 20026] Length = 1217 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 171/1022 (16%), Positives = 325/1022 (31%), Gaps = 128/1022 (12%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 FG + E + + + + K + LQ Q Sbjct: 232 FGSLPDTDIEALLQSMQRTATSLRDLTELEDYGQLTKAGKPSAKYQKHLQMIQLLQEWSL 291 Query: 65 RFSLL--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F + T + + K Q ++ + Sbjct: 292 HFDTYYGKEQISQLARDVLALLPTGDAVTINKRKYSVFKDLQARLKDVQHLETIFTFQAE 351 Query: 123 TLASLTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 TL L L + Y +AK + +F D+ +L+ I+ + + Sbjct: 352 TLPLLKLLQAFVLDFSKAYLKAKIEENAFEFSDVAHFAIAILENNPE---IQVSYQNKYH 408 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +++DE QD + IQ +++ L S+ F VGD KQSIY F A+P Sbjct: 409 EVMVDEYQDNNHIQEKLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPLIFN 457 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIR 296 ++ + Q+ N +I L +FRS +++L V + VFS E + D++ + Sbjct: 458 QKFKDYQENPEN----GRLILLKENFRSQSEVLAVTNAVFSHLMDEAVGDILYDTSHRLL 513 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 SSR + + ++ DSQ QQ + L + + +A I + Sbjct: 514 PGSSRQEESFPENRCQLLLYNTDSQDQSQQ---PDSSEMLSDNQVSPGEVKIVAKEIIRL 570 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DH 415 + + DI +LV R N I +V + Sbjct: 571 HNDEQ---------VAFSDITLLVSSRTR----NDNILRTFNRLGIPLVSDGGLDHYLQS 617 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 + I ++ R I + +D + V +LKSP+F F ED + +I Q + V + +K N Sbjct: 618 VEIMVMLDTLRTINNPLNDYALVALLKSPMFAFDEDQLARIALQESRQDKVESFYEKIQN 677 Query: 476 CGISK--------------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR- 520 K K + + A+ S +D I + + Sbjct: 678 ALSKKGLYPDLVTNDLQESLIRFDKILKQWRLFAKKNSLYDLIWKIYNDRFYFDYVATSP 737 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMT 576 + L + E+ Y L IS LE + V +MT Sbjct: 738 KAEQAQANLYALALRASQFEKTGYRGLSRFISMIDRILETENDLADVDIVQAKDAVNLMT 797 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQS 625 +H +KGLE VF+++ + + + + Sbjct: 798 IHKSKGLEFKYVFILNCDKKFSFKDLYAPAILDRQQGIGIKYLADFKTLLDAEQLSSLKV 857 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-------------- 671 K LK++T E RLLYV MTRA +L + + Sbjct: 858 TLETLPYQMNRKALKRATLSEQMRLLYVAMTRAEKKLYLIGKGSQEKLADKYDGQREGNH 917 Query: 672 -----NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL-- 724 E + + W+ + +SF +E ++ + + + + + Sbjct: 918 LPRTVRENLQSFQDWFLAIRESFAQEELYFDLRFESDSDLGDDAIGQLVVKEVLDPDNLA 977 Query: 725 --EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------------------- 762 + + I + +D + +L I+ P + PS + Sbjct: 978 HNRQSDHIARALDMLEKVNQLNQSYHAAIHLPTVQTPSQLKDFYQPIMDSEGVAVIEKSR 1037 Query: 763 ---DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 S G +H+L+Q I +++ + NA Sbjct: 1038 PLSQASFVLPNFSENLTIDASQIGSSLHELMQKITISERVTQESVRKALTLVNASESLKA 1097 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISIS 874 + L I + + + + E + K ++ ++ G ID + Sbjct: 1098 KLD--LDKIIQFFNQTALGQLICNHHQKLHREAPFAMLKKDMLSQEKFVVRGIIDGYLLF 1155 Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 + I +F+YKT + + + + QL++Y + L +Y ++ L+ + + + Sbjct: 1156 KDKIILFDYKTDKY--HQASELERRYAGQLALYAEALSQAYNIDTVEKYLVLLGGEDLEV 1213 Query: 935 IP 936 I Sbjct: 1214 IS 1215 >gi|169335596|ref|ZP_02862789.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM 17244] gi|169258334|gb|EDS72300.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM 17244] Length = 1171 Score = 333 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 166/971 (17%), Positives = 350/971 (36%), Gaps = 104/971 (10%) Query: 29 SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88 D+ + +++ ++ T L++ + + F + L + + + E Sbjct: 241 DDLLEILNMDLDGLKNTQNLLINNLEKFITLK-PADIFKRFKAGGLKGEEKAEVQNLRNE 299 Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 L + + I + + +A+Y K + VL+ Sbjct: 300 SKDILKKALNILTFNYKDIIDVVHEL-----YPHMKTIEQAIIDFDAYYSHLKSEKGVLE 354 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F+D +L+ I + +++ +DE QDT+L+Q +I + ++ Sbjct: 355 FKDTEHLCLKILEDEKAREEIL----SKFDYVFVDEYQDTNLVQEAIINKVIKE------ 404 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 LF VGD KQSIY F AEP+ L + +K + + + +FR+ Sbjct: 405 -----NNLFTVGDVKQSIYRFRQAEPEIFLDRIKNYKKD----EKINKTVYMNTNFRTNK 455 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 +I+T ++ +F + + + R + R + + S+ + + + Sbjct: 456 NIITGINTLFEKIMSKKTGKINYDENERLIAGRDEE---------IESKIEVHLINKDTA 506 Query: 329 WTSYFD-SLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKRKDT 386 FD L + S+ IA I+N+IGTD + R ++ DI +L R Sbjct: 507 GVDSFDSELSELSTEENEITYIALMINNLIGTDIYDPELKEYRKVKFSDICILHRS---A 563 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 + + N Y I V L I+ + I + +DD++ + +++SP+F Sbjct: 564 NTRIKNVKEIFNKYSIPVTSEKEIEYFKTLEIETIKDFLSIINNFKDDITLLSVMRSPIF 623 Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPH 501 NF+ D++ +I E+ + K ++++K I++ + + S Sbjct: 624 NFTVDELLEIKISTRESHYYKSIMSFINKENVNITLKDKVKNMLKVINDYSDRSLYTSVP 683 Query: 502 DFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE---QY 557 D + I + FGN ++ + L E S L I+ ++ Sbjct: 684 DLISNIYEETNIMDYMSALPFGNIRVNNMKTLLIKANEYESFSNEGLYGFINFMDYAKIQ 743 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + + N V M++H +KGLE P+V L+ K + + L P Sbjct: 744 SESGYAFSEDSENSVNFMSIHKSKGLEFPIVILMGCHKMFNMLDTKKPIMLNKDLGICPS 803 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE---- 673 + + K + E RLLYV +TRA ++LI+ +S + + Sbjct: 804 LIDLDNKYKVDSIFKICAKIVENNEILSEEMRLLYVALTRAKEKLILTAYSKDTKKLIDN 863 Query: 674 -----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + + K + N+I ++ ++ + Sbjct: 864 LPSNITPYSVEFSNSYLEWIMQGILPNKIYEEENNIIYEDNNFIVYNNKIEDLLTELSTS 923 Query: 729 TIKQLMDEQKIPKKLFSPIKNDI----------NEPYILNPSTID-------------TK 765 I Q D+ + K+ + IK+D+ P S++ Sbjct: 924 YINQKDDDFYLDDKIINKIKDDLNFKYKNIVNTTIPRKAGVSSLKNVDLLEVGNNVINLS 983 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIF-------TLPEHKRKNFITSYCTKNAKLWPA 818 + S + +G IIH + ++I + + I + K K+ Sbjct: 984 EAPKFKQEKSVLSSAEKGNIIHFIFEIIDIDKLKKTENIKAEIDTQIREFINK--KMIKQ 1041 Query: 819 KEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPK---------KDIIISGR 867 +E N+ + I ++ + + S Y E+ + + ++I++ G Sbjct: 1042 EEVDNIDINYIYNFFDSNIGKELIHSKKIYRELPFNLALKAKDISEKWKDSEEEILVQGI 1101 Query: 868 IDQISISQQNI-FIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLL 924 ID ++ + +YKT+H + E + + QL+ Y++ + NK++ + Sbjct: 1102 IDLTFETKDGAMILVDYKTNHYNNESEKKELLKGFEIQLNYYKRAISTLM-NKNVKHSYI 1160 Query: 925 IYVSEPKVFII 935 ++S+ ++ + Sbjct: 1161 YFLSKNEIEEV 1171 >gi|30018548|ref|NP_830179.1| DNA helicase II [Bacillus cereus ATCC 14579] gi|229042192|ref|ZP_04189946.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676] gi|229107966|ref|ZP_04237593.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15] gi|229125791|ref|ZP_04254817.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4] gi|229143089|ref|ZP_04271522.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24] gi|229148694|ref|ZP_04276944.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550] gi|29894089|gb|AAP07380.1| DNA helicase II [Bacillus cereus ATCC 14579] gi|228634702|gb|EEK91281.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550] gi|228640362|gb|EEK96759.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24] gi|228657648|gb|EEL13460.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4] gi|228675469|gb|EEL30686.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15] gi|228727127|gb|EEL78330.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676] Length = 753 Score = 333 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + ++ +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|229587088|ref|YP_002845589.1| ATP-dependent helicase [Rickettsia africae ESF-5] gi|228022138|gb|ACP53846.1| ATP-dependent helicase [Rickettsia africae ESF-5] Length = 822 Score = 333 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 172/621 (27%), Positives = 296/621 (47%), Gaps = 39/621 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K+++++E+ +K P L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L +F + ++F VGD+KQSI+SF GA+ + + T Sbjct: 357 PSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 NA +KF I L S+RS +IL V ++ S + SS G+V Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPGLFLSNNPL--ISSFRTHQGSVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V S+ ++ W D +S+A +L +I I I ++ I + R Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + + K+ V +DR L ++L I DL++L +F+L Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ SE ++++ + E +S + + + Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI + + +FF L++ R+ + ++ D++ E L + + +SLQ Sbjct: 634 SLIELYKISIVENFFDLVVHNLNLRELY----DDDSDDMITELLTLSKNYANDIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ E IKR + +++R+MTVH +KGLE+P+V L D+ + S Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798 Query: 670 TSNEKKSNQRTWYDMVYDSFH 690 SN+ + + WY++ + Sbjct: 799 -SNKSTTPENCWYEIAKQTCD 818 >gi|296501120|ref|YP_003662820.1| DNA helicase II [Bacillus thuringiensis BMB171] gi|296322172|gb|ADH05100.1| DNA helicase II [Bacillus thuringiensis BMB171] Length = 749 Score = 333 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 124/763 (16%), Positives = 238/763 (31%), Gaps = 133/763 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + ++ +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 +++ +E RL YVG+TRA ++L + + +++ + + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTSMNAASRFIIEIPTELVES 647 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 S+ T R + + Sbjct: 648 LNETAPKRETSFGAKGRTASSGKTTITTTTRSRSAFARPAAKT 690 >gi|300704439|ref|YP_003746042.1| helicase, uvrd subfamily [Ralstonia solanacearum CFBP2957] gi|299072103|emb|CBJ43435.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CFBP2957] Length = 1177 Score = 333 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 155/959 (16%), Positives = 325/959 (33%), Gaps = 80/959 (8%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 + D+ + + T + A+ L + S + F +L + F Sbjct: 247 AALLADMLRVSGWLGQG--GAAEGKRAVQIETAVTTARALDR-SDAAARRDAFEMLFTAF 303 Query: 74 LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 TQ P+ T+ + + L + + R + ++ A T Sbjct: 304 HTQAGKPRACKPTKALVNAIGEGSAQTLVDLHGALCEALAAYHARRHESRVRAINAALFT 363 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L L Y+ K++ +DF DL L++ D +A+++ ++D H+L+DE QDT Sbjct: 364 LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +QW ++ + + G T+F VGD KQSIY F A+ + + + Sbjct: 424 NPMQWRIL----QGWLRGYEGTGMRPTVFLVGDPKQSIYRFRRADARLFEAARDMLVAGF 479 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +++ + R+ +L V+ VF + + + + Sbjct: 480 -----DATVLRTNRTRRNAPAVLEWVNAVFLQARARGDY---AIYAEQSTAVDAPAGQAL 531 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 L V + + +S ++A + + + + NG + Sbjct: 532 LLPLVPVPEAAQTGEAAPRDSLTEPREEAGDSQRYDEGCQVAACLRALHAGERVRENGDE 591 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R ++ D +LVR+++ R D + + R L L DL AL F+ Sbjct: 592 RPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDFL 647 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEYIQKFANCGI--SKFQHV 484 ++ + DL +L+SP+F ++DD+ + + T + + A+ ++ +H Sbjct: 648 MTPQADLPLAHVLRSPIFAATDDDLIALAQTGEGASAPTWWARLTALASQPHAAARLRHA 707 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE 540 + + + +A HD I+ + ++++ R + + LD FL L + Sbjct: 708 HRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPDASREQALANLDAFLKLALDLD 767 Query: 541 QNSYSSLQELISELEQ---YPPTIKRA------------------HSANHNEVRIMTVHT 579 Y SL + ++EL S + V+I+TVH Sbjct: 768 GGRYPSLPKFMTELRAIRQGDEEESPDEGVQGDAAETPDAIDAELASEGLDAVQILTVHA 827 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 +KGLE+P V L+D+ + + P ++ R L Sbjct: 828 SKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAFGKTAERGRARDPLFTQE 887 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 + E LLYV MTRA LI+ +N + + V + Sbjct: 888 AALAERENWNLLYVAMTRARQALIVSGVANKRDG----------------AAAQAVDEGD 931 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + W + P+ + E + + + + + + Sbjct: 932 VPEVDGSASWYTLLATAGVATPAPVAQAEAGGEAV-HAGPRAVSYHDFREPLTVTVRIGG 990 Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPA 818 + N + D +G ++H +L+ + + + A Sbjct: 991 TAERVADAPNAADAIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAAIARWFGATGITD 1050 Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878 + ++ +L + + ++ P ++ RID++ + Sbjct: 1051 ADAARAAEAVRCMLAAEALAHVFDAARFDVAHNEVELFSPDGALL---RIDRLIERGGEV 1107 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + +YK +P E + QL Y + YP +++ + ++ + + Sbjct: 1108 LVVDYKL-RLLPVE----RVAYADQLRGYVAAVAPMYPGRTVRAG-VATAQGEWIDLDA 1160 >gi|225868711|ref|YP_002744659.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. zooepidemicus] gi|251764568|sp|C0MGY6|ADDA_STRS7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|225701987|emb|CAW99551.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi subsp. zooepidemicus] Length = 1214 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 151/1015 (14%), Positives = 327/1015 (32%), Gaps = 129/1015 (12%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 +++ + + + + K + L+ F Sbjct: 237 PDQAVDTLLACMQDTADQLRDLTDMEGYAQTTKAGKLTAKYTKHLKMIDSLYEWALHFDS 296 Query: 69 LSS-FFLTQKFTPQKNIITQEIN-KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L L Q ++ + + K Q++ + R + +L Sbjct: 297 LYGKARLGQLAQELTALLPSGADITVAGHKYPIFKSLQEQLVGFRHLETILAYQQESLPL 356 Query: 127 LTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L + + Y AK + +F D+ ++L++ + IR + +++ Sbjct: 357 LEVLQAFVISFSEAYLAAKMQENAFEFSDIAHFAIEILQQ---APDIRQAYQGHYHEVMV 413 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q ++ L S+ F VGD KQSIY F A+P+ ++ + Sbjct: 414 DEYQDNNHMQERLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 Q + +I L +FRS +++L V + VFS + + + Sbjct: 463 DYQSNPEH----GKLILLKENFRSQSEVLNVTNAVFSRLMDESLGEITYDDKHQLVAGSE 518 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 Q + +++ + S D + +A I + + Sbjct: 519 AQKQLHPENRAQLLLYNTDQAQEGTEEASTNDGISAG-----EVTLVAKEIIRLYNEE-- 571 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421 + +DI +LV R I + N Y I V + + + + Sbjct: 572 -------KVAFEDITLLVSSRTRNDTIFQVF----NQYGIPLVADGGQENYLKSVEVMVM 620 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA------- 474 + R I + +D + V +++SP+F+F ED + +I Q + + K + Sbjct: 621 LDTLRSINNPLNDYALVALMRSPMFSFDEDQLARISLQSSSQDQPQAFYDKLSNSLRGQG 680 Query: 475 -------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI 526 ++K + + + A+ S ++ + + S+ + Sbjct: 681 EHPGLIGQELMTKLVDFDRTLSDWRQFAKLHSLYELIWKVFNDRFYFDFVASQPKAEQAQ 740 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 L + EQ+ Y L I LE + V +MT+H +KG Sbjct: 741 ANLYALAIRADQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVERPKHAVNLMTIHKSKG 800 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQSKSRNNI 631 LE VF+++ + + + + + Sbjct: 801 LEFHYVFILNCDKRFAMADLQAPIILNRDEGIGIKYVANVKELLRDEKLASLKVTMETLP 860 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SN 672 + L+ +T E RLLYV MTRA ++ + ++ S Sbjct: 861 YQLNKQQLRLATLSEQMRLLYVAMTRAEKKVYLVGKASKEKIQAKTADNSSEGRLALASR 920 Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREE 728 E+ + + W + +F ++ ++ + + + + + + E Sbjct: 921 ERLLSFQDWLLAITATFSKEDLFIDVRFVDDSDLTAEAVGQLRSSGLLQADDLKDNRQTE 980 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768 I + +D KL + + I P + PS + T + Sbjct: 981 DIARALDMLDKVSKLNASYQAAIELPTVRTPSQLKTLYEPLMDTDGVDIIDQPYHRPKSF 1040 Query: 769 --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-L 825 S + G +H+L+Q I + + + A+ + + Sbjct: 1041 DLPDFSKKKAVEPSQIGSSLHELMQRIPMSDQVTAGDIEQAL---QFVSADAEVKARIDI 1097 Query: 826 LSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880 +T + + + E + K + ++ ++ G ID + + I + Sbjct: 1098 KKVTSFFATTELGQLLQEHHQCLHREAPFAMLKKDSLSQEQYVVRGIIDGYLLFEDRIVL 1157 Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 F+YKT H+ Q + + Q+ +Y + L SY + L+ + ++ ++ Sbjct: 1158 FDYKTDHY--QHSAELKQRYQQQMDLYAEALSQSYGIARIEKYLVLMGGSQLEVV 1210 >gi|229009788|ref|ZP_04167008.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048] gi|228751406|gb|EEM01212.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048] Length = 743 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 225/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|229095008|ref|ZP_04226004.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29] gi|229113961|ref|ZP_04243387.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3] gi|228669420|gb|EEL24836.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3] gi|228688338|gb|EEL42220.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29] Length = 749 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 227/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLATRF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R+ + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYREMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|165933684|ref|YP_001650473.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa] gi|165908771|gb|ABY73067.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa] Length = 822 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 173/622 (27%), Positives = 297/622 (47%), Gaps = 39/622 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K+++++E+ +K P L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 L QW +I +L +F + ++F VGD+KQSI+SF GA+ + + T Sbjct: 357 LSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 NA +KF I L S+RS +IL V ++ + + SS G+V Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPSLFLANNPL--ISSFRTHQGSVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V S+ ++ W D +S+A +L +I I I ++ I + R Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + + K+ V +DR L ++L I DL++L +F+L Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ SE ++K+ + E + + + + Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYKLLVNKRENS---------LWDILPSHEEIYNKLD 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI I + +FF L++ R+ + ++ D+++E L + + +SLQ Sbjct: 634 SLIEIYKTSIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ E IKR + +++R+MTVH +KGLE+P+V L D+ + S Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798 Query: 670 TSNEKKSNQRTWYDMVYDSFHN 691 SN+ + + WY++ + Sbjct: 799 -SNKSTTPKNCWYEIAKQTCDQ 819 >gi|157149814|ref|YP_001450693.1| first chain of major exonuclease RexA [Streptococcus gordonii str. Challis substr. CH1] gi|251764541|sp|A8AY33|ADDA_STRGC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|157074608|gb|ABV09291.1| first chain of major exonuclease RexA [Streptococcus gordonii str. Challis substr. CH1] Length = 1216 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 157/995 (15%), Positives = 324/995 (32%), Gaps = 139/995 (13%) Query: 36 SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95 + +L L + ++ F +L L + + + + ++ + Sbjct: 263 EFAGAKYQENVLLALDKLGSLQELSSEQDYFRVLKDVVLLSRASGGRALTITTRKEELKE 322 Query: 96 LKEKLKKSQ-DEFIKIRDRFNTYKMFKSTL-----------ASLTLAKYLNAHYEEAKKK 143 L + + + + +R ++ F+ Y E KK Sbjct: 323 LADTFNQGRKERIEHLRGLESSIYQFEFLEKYQDDSLPLLDLLRDFMSDFTQTYLERKKT 382 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 +F D+ +L+ +R + + +++DE QDT+ Q ++ L Sbjct: 383 ENAFEFGDISHFAIQILEDFP---QVRSFYQERYHEVMVDEYQDTNHTQERMLELL---- 435 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 S+ F VGD KQSIY F A+P+ + R+ Q + +I L + Sbjct: 436 -------SNGYNRFMVGDIKQSIYRFRQADPQIFNDKFRLYQAD----PSQGKLIVLKEN 484 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 FRS ++L + VF + Q + T + + ++ Sbjct: 485 FRSHVEVLEATNDVFKRLMDEQVGEINYDETHYLVAGNPTKA---------SPDPKNRAE 535 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 T + L +ES ++ + I + + + KDI +L R Sbjct: 536 FLLYDSTVASEELSEESISAGEVSLVIKEIIRLHEEE---------AVAFKDITLLTASR 586 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 + + I +V + + + ++ R I + +D + +LK Sbjct: 587 T----RNDIILAEFAKHNIPLVPDGGEDNYLQSVEVMVMLDTLRTINNPLNDYALTALLK 642 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--------------CGISKFQHVIKYI 488 S +F+F ED++ +I Q+ + ++ +K N K + K + Sbjct: 643 SAMFDFGEDELARIALQKSQEKSQENLYEKLENALTNQGLHPDLILPDHKKKLELFQKTL 702 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 A+ S +D I + + + G + L E++S+ L Sbjct: 703 LSWRTFAKTHSLYDLIWKIYQDRFYYEYVGALPNGAQRQANLYALSLRANDYEKSSFKGL 762 Query: 548 QELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 IS +++ ++A + V +MTVH +KGLE VFL++ Sbjct: 763 SRFISMIDKILENQHDLASVPYAAPQDAVHLMTVHKSKGLEFKYVFLLNMDKAFNRQDTS 822 Query: 604 KKMHIMPSLNDD------------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 + + + + ++ +K ++ E RLL Sbjct: 823 SSIILSRKNGIGIKYIADVEVEYPEKVKPRSIRLSMDTLPYQQNLEEIKLASLSEQMRLL 882 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQR-------------------TWYDMVYDSFHND 692 YV MTRA +L + + +K + W + F D Sbjct: 883 YVAMTRAETKLYLVGKGSQEKLEKRSWGQAEQGLLSASIRSQTTSFQDWLYAIQTVFSED 942 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + ++ + + +P + T + E I + +D + +L S + Sbjct: 943 QLAFDLRFVRDEDLTADKIGQIHHSNPFDADDLTDNRQSEDIGRALDILESVDRLNSQYR 1002 Query: 749 NDINEPYILNPSTIDTKGKT------------------------NLESLLSDNQTFNRGL 784 + I P + PS I + S + G Sbjct: 1003 SAIELPSVRTPSQIKKFYEPIMDTEGMDIIDERVAFRPQPNFDLPDFSRKAKVTGAQVGS 1062 Query: 785 IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842 +H+L+Q I + S A+ K+ L I E + ++ Sbjct: 1063 AVHELMQRIPIDQKPDMAVLKLSLKQVQAEESVKKQID--LNKIASFFETRLGEILLANS 1120 Query: 843 CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900 + E + + +D ++ G +D + + I +F+YKT + + + Sbjct: 1121 DKLHREAPFAMFKRDEISGQDFVLRGILDGYLLFEDRIILFDYKTDKYKEAS--ELIARY 1178 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +QL +Y + L SY + LI + ++ ++ Sbjct: 1179 HSQLDLYAQALSRSYGISQIEKYLILLGGEQLQVV 1213 >gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille] gi|151281175|gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 1083 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 149/921 (16%), Positives = 310/921 (33%), Gaps = 109/921 (11%) Query: 34 YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93 V+ + G ++A +++A E F L++ F +KN T+ + K Sbjct: 253 QVAWLLGQGTAVNQERATAIEKAVTAGAALENFDALTNEFFDAGGKFRKNRATKNLTKAL 312 Query: 94 PD---------LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 D + + + + KI R K+ + T+ Y+ K + Sbjct: 313 LDNLGEEGVYAFEVEFESIGEALKKILRRSMEPKVIALNRSLFTVGAAYLEIYQAVKAEQ 372 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 V DF DL LL + +A+++ ++D H+L+DE QDT+ +QW ++++ + Sbjct: 373 RVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYKHVLLDEFQDTNPLQWSIVQA----WL 428 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 + ++F VGD KQSIY F AEP+ + + + + + + Sbjct: 429 KAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAREVLVAQGADFLRT------NQTR 482 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 R+ I+ V+++ F +++ + G V V + + Sbjct: 483 RNARGIVDVLNESFRANPIYTA-----------QTTLSNEAGAVWQLPLVQQEKSEKVVW 531 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 + +E + + + + + D+++LV+KR Sbjct: 532 SPANMRDPLTEPREEEEDAR-----RLQEGRAVAQAILRAREVTPGTKWSDVMLLVKKRT 586 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 R I + R L + L + DL+AL F+++ D+L+ +LKSP Sbjct: 587 HLSAYERALRE----AGIPFASDRRGGLLESLEVADLIALLTFLITPHDNLALAHVLKSP 642 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 + +++D+ + + +T + A Q + + + + +A HD Sbjct: 643 IMGATDNDLIALALRAEKT---WWGRLHQAELNSEVLQRAVSLLEKWLELAARLPVHDLL 699 Query: 505 TLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---- 556 IL ++ +V+ ++ F L + Y SL + I L + Sbjct: 700 DRILHEGDVVARYAQAASPLVRGQVLANIEAFTELALNLDAGRYPSLPKFIDALRRLQKS 759 Query: 557 --YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + A+ + RI+T+H AKGLE+ +V L+D + + D Sbjct: 760 ADSDAPDEAEIDASLDAARILTIHGAKGLEADIVVLLDANHSDPARDDYGVLCEWKQEAD 819 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 P + R L ++ +E LLYV TRA LI+ ++ + Sbjct: 820 APNHFSVFGRQAERGAARDYLFAEEEQLKTQEDWNLLYVATTRAKKLLIVSGVADARSAS 879 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 ++ + + + L + + + + + P PLE+ E Sbjct: 880 ENGVADGCWYARFQGAEEPELDQRVLVSDLKLE--AGFPLAIFSPPPLPLEQAEIPAAFS 937 Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794 + G+ +H L++ + Sbjct: 938 SAE------------------------------------------IEEGIALHALMERLT 955 Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854 + + + + + +L P + + + Sbjct: 956 QTWPVQIHAAP---VLAKWLPCSRELAEVVRVQADTILAQPELQRFFDPAQHRFARNEME 1012 Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 I R D++ + ++I +YK + + AQL+ Y +D Sbjct: 1013 IVSSAG----VARFDRVVMFDDELWILDYK-----RNLFDSERVAYAAQLARYRLAAQDV 1063 Query: 915 YPNKSLVCLLIYVSEPKVFII 935 +P + LI + + + Sbjct: 1064 FPGLKIRTALI-TVDGTLTEV 1083 >gi|299067242|emb|CBJ38439.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CMR15] Length = 1177 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 160/958 (16%), Positives = 328/958 (34%), Gaps = 82/958 (8%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 + D+ + + T + A+ L S F L + F Sbjct: 247 AALLADMLRVSGWLGQG--GAAEGKRAVQIETAVTAARAL-DLSDAAARRHAFEALFTAF 303 Query: 74 LTQKFTPQKNIITQEI-----NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 TQ P+ T+ + + L + + R + ++ A T Sbjct: 304 HTQAGKPRACKPTKALIKTIGEDAAQTLVDLHAALCEALAAYHARRHESRVRAVNAALFT 363 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L L Y+ K++ +DF DL L++ D +A+++ ++D H+L+DE QDT Sbjct: 364 LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +QW ++ + + G + T+F VGD KQSIY F A+ + + + Sbjct: 424 NPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFDAARDMLVAAF 479 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +++ + R+ +L V+ VF + + + + VG Sbjct: 480 -----DATVLRTNRTRRNAPAVLEWVNAVFLLARARGDYPIYAEQSTGVDAP----VGRA 530 Query: 309 QLWEQVVSQHDSQCNP-QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 L V +Q + + +S R++A + + + + NG Sbjct: 531 LLLPLVPVPEAAQADETAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGA 590 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +R ++ D +LVR+++ R D + + R L L DL AL F Sbjct: 591 ERSVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDF 646 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISK--FQH 483 +++ + DL +L+SP+F ++DD+ + T +E + A+ + ++ Sbjct: 647 LMTPQADLPLAHVLRSPIFAVTDDDLIALAQAGEGASAPTWWERLTALADRPHAAAQWRR 706 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRN 539 + + + +A HD I+ + ++++ R + + LD FL L Sbjct: 707 AHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDL 766 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH---------------------NEVRIMTVH 578 + Y SL + ++EL + + V+I+TVH Sbjct: 767 DGGRYPSLPKFMAELRAIRQGDEEESPDEGVQADAAEAPDAIDAELASEGLDAVQILTVH 826 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE+P V L+D+ + P + P ++ R L Sbjct: 827 ASKGLEAPFVVLLDSHHSDTRADTAGILIDWPPGAEAPAHFSAFGKAAERGRARDPLFAQ 886 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E LLYV MTRA LI+ +N + + V + Sbjct: 887 EAALAERENWNLLYVAMTRARQALIVSGVANKRDG----------------AAAQAVDEG 930 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 + W + P+E D + + + + Sbjct: 931 DAPDVDGSASWYTLLATAGAATPAPVEAAAGTG-GADHAASQAVAYHDFRVPLTVTVRIG 989 Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817 + + + D +G ++H +L+ + + + A Sbjct: 990 GAAERVADAPDTADAIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAAIARWFGATGIT 1049 Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877 + ++ R+L + + ++ P+ ++ RID++ Sbjct: 1050 DADAARAAEAVRRMLAAEALAHVFDPARFDVAHNEVELFSPEGALL---RIDRLIERGDE 1106 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + + +YK +P E + QL Y + YP +++ + ++ + + Sbjct: 1107 VLVVDYKL-RLLPVE----RAAYADQLRGYAAAVAPIYPGRAVRAG-VATAQGEWIDL 1158 >gi|229159445|ref|ZP_04287463.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803] gi|228624016|gb|EEK80824.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803] Length = 754 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDAGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|239825841|ref|YP_002948465.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70] gi|239806134|gb|ACS23199.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70] Length = 732 Score = 332 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 123/694 (17%), Positives = 232/694 (33%), Gaps = 136/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ Q L + + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVQGLLGGAAEEIWIST 91 Query: 66 FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106 F + L T + + KNI+ + I+ K D + L + Sbjct: 92 FHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNILKEKNIDPKKFDPRAILGTISNA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K S + + Y++ +N LDF+DLI+ T L ++ Sbjct: 152 KNELLTPEKFAKKVSSYYE--KIVSDVYEEYQKRLLRNHALDFDDLIMTTIQLFER---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I IDE QDT+ Q+ +++ L F + + VGD QSI Sbjct: 207 PEVLEHYQYKFQYIHIDEYQDTNRAQYVLVKMLASRF----------KNICVVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L ++ +I L ++RST IL ++V N + Sbjct: 257 YRWRGADIQNILSFEKDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW Q+ + + + A Sbjct: 309 KK---------------------LW-------TENPEGQKIVYYEAMNESDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + + I + + + D +L R + ++ + I Sbjct: 334 QFVVGKIKEYVDSGKR---------RYSDFAILYRTNAQSRVMEEVL----LKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 D IKD++A R I + DD+S + ++ P I KI + Sbjct: 381 VGGLKFYDRKEIKDVLAYLRVIANPNDDISLLRIINVPKRGIGVSSIDKIVSYASENGLS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 V+E + + + + + + + + ++ S + +L R+ + Sbjct: 441 VFEALGELEHIGLSARTAASLIEFRRQLEQWAQLQEYVSVTELVEEVLDKSGYREMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAH--SANHNEVRI 574 E + +DEFL+ T E + SL +++L + N + V + Sbjct: 501 KTLEAQSRLENIDEFLSVTKHFENVSEDKSLIAFLTDLALISDIDQLNETNGENQDAVVL 560 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H+AKGLE PVVFL+ +F H Sbjct: 561 MTLHSAKGLEFPVVFLIGMEEGIFPHSRSLDDG--------------------------- 593 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 EE RL YVG+TRA ++L + Sbjct: 594 -------DEMEEERRLAYVGITRAEEELFLTSAQ 620 >gi|229828348|ref|ZP_04454417.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM 14600] gi|229792942|gb|EEP29056.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM 14600] Length = 1315 Score = 332 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 163/1068 (15%), Positives = 327/1068 (30%), Gaps = 185/1068 (17%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS----L 68 + + + + + + LS G P + + ++ E FS + Sbjct: 225 VQGLTNRIKSQAEACEDLLEEAMQLSRLPGGPHYQEAIEADLAYCESIREAEDFSRIALI 284 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF------IKIRDRFNTYKMFKS 122 LS + +K + +E+ ++ DL+++ KK ++ + M Sbjct: 285 LSGIQWKKLSGKRKGV-DEELKARAKDLRDQSKKVFEQLRRDYSGDPAAEFDKLSVMAPY 343 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA----WIRYKIDQEIN 178 L L K +E K+K V+DF DL +L+ A + ++ Sbjct: 344 LKTLLDLTKEYAVSFEACKRKKNVVDFADLEHYALRILRDPADPAHPMTETAENLCRQYA 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 ++IDE QD++ +Q ++ ++ + F VGD KQSIYSF A P+ Sbjct: 404 EVMIDEYQDSNNLQEAILSAVA-------GSDQGEHKTFMVGDVKQSIYSFRQARPELFN 456 Query: 239 REKRINQKRATNAGQKF--SIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTT 294 + + K + + I+L +FRS +IL + +F E+ G++ Sbjct: 457 SKLKSYDKLTAESQKTVRSQRIDLSRNFRSRQEILDFANHIFYRVMQEDLGGVAYHEDVA 516 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 + + V S E ++L E A + A I I Sbjct: 517 LHLGADYPATAAAV---SGKAEDPYSAELILCEQDMEALEALGLEDKAELEANMIGERIQ 573 Query: 355 NMIGTDTIF-------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 ++ + R ++ +DI++L+R + I Sbjct: 574 RLMKEQKVVNEEAEEGDQNPLRRLRYQDIVILLRSPGSN---GQVFVDRLTQMGIPAHIT 630 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRH---- 461 D + + +AL + +++DD S ++ S +F F+ED ++ I + Sbjct: 631 SGKGYFDTVEVSRFLALLSLLNNRQDDRSLAAVMLSHVFGEPFTEDQLYLIRSAYPRLTT 690 Query: 462 -----------ETETVYE-------------------------YIQKFANCGISKFQHVI 485 + ++E ++ + K Sbjct: 691 GQDRGDESRDIQNACLWESLEAMESYSRGILAGEKEDSDQRPGHLLELDTSLPQKVLDFC 750 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSY 544 + + H +L + G + L + ++ +R E +SY Sbjct: 751 DRLEAARARIPYTPIHRLIEELLDETAYLNYVTALPGGQIRRANLLKLVDEAIRFEGSSY 810 Query: 545 SSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L ++ +++ + + VRI ++H +KGL+ PVVF+ G + Sbjct: 811 RGLYRFMNYIQKLRTYNVDLSAAELIGEEDDAVRITSIHKSKGLQYPVVFVCGLGQKFNM 870 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 M I L ++ S + + K+++ E R+LYV +TRA Sbjct: 871 RDSSGDMLIEMDLGISLRTRNAAKRTMSDSLFHRAVSDQRKENSLAEEMRVLYVALTRAK 930 Query: 660 DQLIICK------------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK-------- 699 ++LI+ T + ++ + + D + + Sbjct: 931 EKLILSGSLSRLKERLDQEWEATRGKGDGYVLPYHRRMGAKNYLDWILPSLASYGELYRQ 990 Query: 700 --------LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS------ 745 ++ + A + TP E +K L + + + L Sbjct: 991 SIHCYIPGEDGALTWGQEQAESPGRADCDGTPANHLEDLKDLPGTEALLQYLRRVFAYRY 1050 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------------------------- 778 P N + S I + Sbjct: 1051 PYAASQNYKSKYSVSEIKHASMQLGMGEKEGQEIFRPVDEDRYVPEFARAVTEERGQNNK 1110 Query: 779 ----TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYK-NLLLSITRLL 832 RG +H++++ + E + + +E L I L Sbjct: 1111 KIHPGALRGTAMHRVMECLDFAREDYADSLGEQLDQMRADGRLSEEELGLVLPDRIQSFL 1170 Query: 833 ENPMMTTAMSCDS----YSEVSVSGKI-------------------------NCPKKDII 863 + M Y E + + I+ Sbjct: 1171 KQDMADRIHRSAVEGRLYREQPFVMGLRPKEIDRLMGRQPSAASKESETDAAAVGENMIL 1230 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911 + G ID I IF+ +YKT Q+ + + AQL +Y + + Sbjct: 1231 VQGIIDLFFIEDGKIFLLDYKTDRV--QDESELVGRYQAQLLLYAQAV 1276 >gi|157828959|ref|YP_001495201.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801440|gb|ABV76693.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 822 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 173/622 (27%), Positives = 297/622 (47%), Gaps = 39/622 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K+++++E+ +K P L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 L QW +I +L +F + ++F VGD+KQSI+SF GA+ + + T Sbjct: 357 LSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 NA +KF I L S+RS +IL V ++ + + SS G+V Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPSLFLANNPL--ISSFRTHQGSVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V S+ ++ W D +S+A +L +I I I ++ I + R Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + + K+ V +DR L ++L I DL++L +F+L Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ SE ++K+ + E + + + + Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYKLLVNKRENS---------LWDILPSHEEIYNKLD 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI I + +FF L++ R+ + ++ D+++E L + + +SLQ Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ E IKR + +++R+MTVH +KGLE+P+V L D+ + S Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798 Query: 670 TSNEKKSNQRTWYDMVYDSFHN 691 SN+ + + WY++ + Sbjct: 799 -SNKSTTPKNCWYEIAKQTCDQ 819 >gi|229101109|ref|ZP_04231875.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28] gi|228682237|gb|EEL36348.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28] Length = 749 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDILVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLATRF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R+ + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYREMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|326203370|ref|ZP_08193235.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM 2782] gi|325986628|gb|EGD47459.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM 2782] Length = 783 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 108/633 (17%), Positives = 210/633 (33%), Gaps = 125/633 (19%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L + KN + + + K++L ++ + F K+ + Sbjct: 124 LKELNLNDKNFPPKSVLETIGKQKDELIDAEQYEKQYASDFRMGKI-----------AKV 172 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 YE+ K N LDF+D+I+NT L ++ + + +IL+DE QDT+ Q+ Sbjct: 173 YKLYEKKLKANNALDFDDIIMNTIKLFERHPE---VLEYYQRRFRYILVDEYQDTNTAQY 229 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++R +++ + L VGD+ QSIY + GA + +L ++ +K Sbjct: 230 TLVRKMSQ----------AHENLCVVGDDDQSIYGWRGANIRNILDFEKDFKK------- 272 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I+L ++RST +IL + V + S + G+ + Sbjct: 273 -CCTIKLEQNYRSTQNILDAANHVIGNNTGRKNKSL----------WTDNKGGSKIV--- 318 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + + + A A I +I + + Sbjct: 319 ----------------------ICENDNEHEEALYTAREIQRIISDEDR---------KY 347 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 KD VL R + ++ + I D IKD++A R + + D Sbjct: 348 KDFAVLYRINAQSRVLEEMF----MREGIPYKIVGGQKFYDRKEIKDIIAYMRLVQNPGD 403 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKY 487 ++S ++ P + + +++ I K Sbjct: 404 NVSLKRVINVPKRGIGDATVENAEVLAYQTNVSLFTVISNTEEFPSLKRAAQKLGSFSLM 463 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNS 543 I++ + + S +++ +++ E + + E + L E Q+ Sbjct: 464 INKFRTMKENMSISQLLDVVVEDSGILREYELENTVEAQSRIENIKELKSVALEFEKQSE 523 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 +SL+E ++ + + + + V +MT+H+AKGLE PVVF+ VF Sbjct: 524 DNSLEEFLAHISLVSDID--SLQEDQDYVVLMTMHSAKGLEFPVVFIPGLEEGVFPGYRA 581 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 EE RL YVG+TRA ++L Sbjct: 582 ITEGP---------------------------------EQLEEERRLCYVGITRAREKLY 608 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 + + S+ + + Sbjct: 609 MSNARFRTLFGNSSYNRPSRFLAEIPEELVEYP 641 >gi|42779415|ref|NP_976662.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987] gi|42735331|gb|AAS39270.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987] Length = 747 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|323351323|ref|ZP_08086979.1| exonuclease RexA [Streptococcus sanguinis VMC66] gi|322122547|gb|EFX94258.1| exonuclease RexA [Streptococcus sanguinis VMC66] Length = 1224 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 154/1016 (15%), Positives = 322/1016 (31%), Gaps = 131/1016 (12%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + + + + T+L L +T I ++ LS Sbjct: 245 ALLELEAFFSAHMEHEGREFAGAKYQENVQDALTLLAGLNELSSIEETAQILKQIVALSQ 304 Query: 72 FFLTQKFTPQ--------KNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKS 122 Q FT + K + ++ N+ + E+L+ + ++ + + Sbjct: 305 LSNGQVFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQDECLPL 364 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 Y E KK +F D+ ++L+ +R + + +++ Sbjct: 365 VELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE---VRRFYQERYHEVMV 421 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q ++ L + F VGD KQSIY F A+P+ + + Sbjct: 422 DEYQDTNHTQERMLDLLA-----------RGQNRFMVGDIKQSIYRFRQADPQIFSDKFK 470 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 Q+ + +I L +FRS ++L + VF + + D T + Sbjct: 471 AYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNP 526 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + + + S S + + ++ A + I +I Sbjct: 527 VKREP-------NLANRASFLIYEGSKESPEEEADEGLPQAVSAGEVDLVIKEIIR---- 575 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDL 421 + + KDI +L R L ++I +V +D + + + Sbjct: 576 --LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLVPDDGAANYLQSVEVLVM 629 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF-------- 473 + R I + +D + +LKSP+F+F ED++ ++ Q + + +K Sbjct: 630 LDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENLYEKLLNVLQGRG 689 Query: 474 ------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526 K QH + + ++ S +D I + G + Sbjct: 690 LNPALVTQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQDRFYYDMVGTLTNGAQRQ 749 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKG 582 L E++S+ L I +++ + + VR+MT+H +KG Sbjct: 750 ANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAVPKDAVRLMTIHKSKG 809 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSRNN 630 LE VFL++ + + + + Sbjct: 810 LEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEDPYAPNQLRISMDTL 869 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS------------------- 671 + L+ ++ E RLLYV MTRA +L + + Sbjct: 870 PYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRLSASL 929 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLERE 727 + SN + W + F ++ + + + + + + Sbjct: 930 RSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGQINEPVLFPADDLANNRQT 989 Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------D 763 + I++ +D + +L S ++ I P + PS I Sbjct: 990 DDIRRALDILESVDQLNSQYRSAIELPSVRTPSQIKKFYEPIMDMDGLDIMDERAAFRPQ 1049 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + G +H+L+Q I ++ A + + Sbjct: 1050 PSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSRPSMAVLRSALAQVQADEAVKNQIQ- 1108 Query: 824 LLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIF 879 L I E + + S E + + ++ ++ G +D + + I Sbjct: 1109 -LPKIASFFETDLGRLLIENSDRVRREAPFAMLKQDEDSGQEFVLRGILDGYLLFEDRII 1167 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +F+YKT + + + QL +Y + L SY + LI + ++ ++ Sbjct: 1168 LFDYKTDKYKDSS--ELIARYHGQLDLYAQALSRSYGISQIEKYLILLGGEQLQVV 1221 >gi|300691831|ref|YP_003752826.1| helicase, uvrD subfamily [Ralstonia solanacearum PSI07] gi|299078891|emb|CBJ51552.1| putative helicase, uvrD subfamily [Ralstonia solanacearum PSI07] Length = 1178 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 160/976 (16%), Positives = 321/976 (32%), Gaps = 80/976 (8%) Query: 1 LKNRFGLSL--NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58 L + G + E + + +VS + I + Sbjct: 227 LDDLLGDDAHTDPLIEALQDAVLLADMLRVSGWLGQGGAAEGKRAVQIETAVTAARALDL 286 Query: 59 TQCIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIR 111 R F L F TQ P+ T+ + K + L + + Sbjct: 287 PDEAARRHAFEALFIAFHTQAGKPRACKPTKALVKAIGEDCAQTLVDLHAALCEALAAYH 346 Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 R + ++ A TL L Y+ K++ +DF DL L++ D +A+++ Sbjct: 347 ARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQV 406 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 ++D H+L+DE QDT+ +QW ++ + + G + T+F VGD KQSIY F Sbjct: 407 RLDARYKHLLLDEFQDTNPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRR 462 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + + +++ + R+ +L V+ VF + Sbjct: 463 ADARLFDAARDMLVAGFEA-----TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYA 517 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 + + + L V Q + +S ++A Sbjct: 518 EQS---TAVDAPVGQALLLPLVPVPQAVQSDETTPRDSLTEPREEAGDSQRYDEGCQVAA 574 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 + + + + NG +R ++ D +LVR+++ R D + + R Sbjct: 575 CLRALHVGERVRENGAERPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGG 630 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEY 469 L L DL AL F+++ + DL +L+SP+F ++DD+ + T +E Sbjct: 631 LLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALARAGEGAFAPTWWER 690 Query: 470 IQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGN 523 + A + + + + + +A HD I+ + ++++ R Sbjct: 691 LTALAGQPHAAAQLRRAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANRE 750 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRA---------------- 564 + + LD FL L + Y SL + ++EL Sbjct: 751 QALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGEAAEAPDTIDA 810 Query: 565 --HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 S + V+I+TVH +KGLE+P V L+D+ + P + P Sbjct: 811 ELASEGLDAVQILTVHASKGLEAPFVALLDSHHSDTRADTAGILIDWPPGAEAPAHFSAF 870 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 ++ R L + E LLYV MTRA LI+ +N + Sbjct: 871 GKTAERGRARDPLFAQETALGERENWNLLYVAMTRARQALIVSGVANKRDG--------- 921 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + V + W + P+E D Sbjct: 922 -------AAAQAVDEGDAPEVDGSASWYTLLATAGVATPAPVEAAAAASTGADHAASQAV 974 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKR 801 + + + + + + D +G ++H +L+ + + Sbjct: 975 AYHDFRVPLTVTVRIGGAAERAADAPGTADAIFDQGAVAQGELLHAVLERLTRHGKPEQV 1034 Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861 + A + ++ R+L + + ++ P Sbjct: 1035 PDAAAIARWFGATGVTDADAARAAEAVRRMLAAEALAHVFDPARFDVAHNEVELFSPDGM 1094 Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921 ++ R+D++ + + +YK +P E + QL Y + YP +++ Sbjct: 1095 LL---RVDRLIERGDEVLVVDYKL-RLLPVE----RAAYADQLRGYVAAVAPIYPGRAVR 1146 Query: 922 CLLIYVSEPKVFIIPQ 937 + ++ + + Sbjct: 1147 AG-VATAQGEWIDLDA 1161 >gi|228899022|ref|ZP_04063295.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] gi|228860597|gb|EEN04984.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] Length = 749 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + + + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDLQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|229021877|ref|ZP_04178447.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272] gi|228739423|gb|EEL89849.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272] Length = 747 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLATRF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|228937586|ref|ZP_04100224.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970473|ref|ZP_04131124.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977042|ref|ZP_04137445.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407] gi|228782659|gb|EEM30834.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407] gi|228789205|gb|EEM37133.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822067|gb|EEM68057.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938079|gb|AEA13975.1| DNA helicase II [Bacillus thuringiensis serovar chinensis CT-43] Length = 753 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 120/690 (17%), Positives = 225/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ L Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + + + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDLQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|75759917|ref|ZP_00739988.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895412|ref|YP_002443823.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842] gi|74492584|gb|EAO55729.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541975|gb|ACK94369.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842] Length = 753 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + + + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDLQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|229015685|ref|ZP_04172668.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273] gi|228745602|gb|EEL95621.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273] Length = 751 Score = 331 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLATRF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|327474835|gb|EGF20240.1| exonuclease RexA [Streptococcus sanguinis SK408] Length = 1224 Score = 331 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 138/1033 (13%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60 + F + I LW L F + + + + L ++ Sbjct: 228 HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287 Query: 61 CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 IEE +L + + K + ++ N+ + E+L+ + Sbjct: 288 PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347 Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + + Y E KK +F D+ ++L+ Sbjct: 348 LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R+ + + +++DE QDT+ Q ++ L S + F VGD KQS Sbjct: 408 ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P+ + + Q+ + +I L +FRS ++L + VF + + Sbjct: 454 IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 D T + + + + + S S + + ++ Sbjct: 510 VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I +I + + KDI +L R L Y+I +V Sbjct: 563 AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612 Query: 406 GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 +D + + ++ R I + +D + +LKSP+F+F ED++ ++ Q + Sbjct: 613 PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672 Query: 465 TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + +K K QH + + ++ S +D I Sbjct: 673 SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 + G + L E++S+ L I +++ Sbjct: 733 RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615 +A + VR+MT+H +KGLE VFL++ + + + Sbjct: 793 AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852 Query: 616 --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 + + L+ ++ E RLLYV MTRA +L + + Sbjct: 853 VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912 Query: 672 -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 + SN + W + F ++ + + Sbjct: 913 DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972 Query: 715 ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762 + + + + I + +D + +L S ++ I P + PS I Sbjct: 973 NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032 Query: 763 ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 + + G +H+L+Q I + Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSRPSMAVLRS 1092 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862 + A + + L I E + + S E + + + ++ Sbjct: 1093 ALAQVQADEAVKNQIQ--LPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDDSGQEF 1150 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 ++ G +D + + I +F+YKT + + + QL +Y + L SY + Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYHGQLDLYAQALSHSYGISQIEK 1208 Query: 923 LLIYVSEPKVFII 935 LI + ++ ++ Sbjct: 1209 YLILLGGEQLQVL 1221 >gi|225019255|ref|ZP_03708447.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM 5476] gi|224947886|gb|EEG29095.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM 5476] Length = 1188 Score = 331 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 147/958 (15%), Positives = 305/958 (31%), Gaps = 109/958 (11%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 + + L+K L + +E +L +F +K + + ++++ + + Sbjct: 260 LRPYHEAALEKLAALIEELDGCGWDEARGVLKAFKFPRKPVKKPEGFDKTLSEEEDE--K 317 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKS----------TLASLTLAKYLNAHYEEAKKKNCVLD 148 LK +++ I T + + + + + +K++ +LD Sbjct: 318 FLKPARNAVNGILKELLTCSEEEFWEDIRLQQPVLRKLCEVVERYSERMDASKREKNILD 377 Query: 149 FEDLIINTNDLLKKRDVSAWIR----YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 F DL I LL +R +R + EI+ IL+DE QD + +Q + ++++D Sbjct: 378 FPDLGIFAIRLLLERREGKLLRTPVGEAVSSEIDEILVDEFQDVNQMQDMLFEAVSKDET 437 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 LF VGD KQSIY F A P+ L+++ +T + + L +F Sbjct: 438 ----------NLFLVGDIKQSIYRFRQASPEIFLQKRARYADFSTGSYPA--RLTLAENF 485 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RS ++ V+ +F + Q D + R++ Sbjct: 486 RSRPEVTGCVNYLFRQLMSEQLGELDYGEGEQLRAAASYPP-------------HPDAQA 532 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLVRK 382 + + D + A I A I I +M+ +GK R D +L+R Sbjct: 533 ELHLIDTAADDSDEGRVA-IEANYIGRKILSMLRNGYPVTGEDGKLRPCTLSDFAILLRS 591 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 +KD + + V + + ++ L R I + D+ + +L Sbjct: 592 KKDKA---EVYAEQLMHLGLDVWTENTSGYFRSREVSLMLNLLRVIDNPLQDIPLLSVLL 648 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 SPL+ F+ D++ ++ + + ++ + L A S Sbjct: 649 SPLYGFTPDELAELRILDRRAPLYLCVTASDSGHC----REFVQSLSRLREAAAVTSVEK 704 Query: 503 FFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-- 559 I F + + L L++ E+ S L + ++ Sbjct: 705 LIQKIYDETLFYALFGAMESSEQKLANLRLLLSYAAGYERGSGRGLSGFLRYIDTAEEAN 764 Query: 560 ---TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + N + VRIMT+H +KGLE P+ F+ + + + + Sbjct: 765 RDFECANIFTENSSAVRIMTMHKSKGLEFPICFVANCAGRFNQRDLSSVYCLSNTHGFAM 824 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--- 673 + + + K++ E R+LYV MTRA ++LI+ ++ + Sbjct: 825 KLTVPELLKQYPTLPYLAAQLENKRALLSEEMRVLYVAMTRAREKLILTIAADNPQQLVQ 884 Query: 674 -----------------------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 + D+ + + Sbjct: 885 KAAVQIVEGERLPFYPLYSAHSYADWLLMGLLRHPSAGDLRSQADSGLSPYEPQSGDARC 944 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP----- 759 + + E ++ + + P L+ Sbjct: 945 PLKVVLDGQEYGEQELEQAQPAPEADEETLAALRQNLGYRYAHAALSEIPAKLSVTQIAE 1004 Query: 760 -STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818 S + + RG H+ +Q S +N + P Sbjct: 1005 HSRPASLTRRPQFERERGLTPAERGTATHQFIQFADFARAADDLEAEISRLRENGFIDPQ 1064 Query: 819 KEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC---------PKKDIIISGRI 868 + + L +P+ + Y E+ ++ + I++ G Sbjct: 1065 QAASVDRKGLESLFHSPLAQRIRAARRVYRELDFFYDLDASEIFPEQETDGEKILVQGIA 1124 Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 D + +++ I +YKT E I + QL +Y++ ++ K + ++Y Sbjct: 1125 DCVLDEGESLVIIDYKTDR---ATREQIAGRYRGQLMLYKRAVEAML-GKPVSACILY 1178 >gi|324991607|gb|EGC23540.1| exonuclease RexA [Streptococcus sanguinis SK353] Length = 1224 Score = 331 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 154/1013 (15%), Positives = 320/1013 (31%), Gaps = 131/1013 (12%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74 + + + TIL L +T + ++ LS Sbjct: 248 ELETFFSAHLEHEGREFAGAKYQENVQDALTILAGLNELSSIEETTQVLKQIVALSQLSN 307 Query: 75 TQKFTPQ--------KNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLA 125 Q FT + K ++ N+ + E+L+ + ++ + + Sbjct: 308 GQAFTARVGKNADELKKETAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQDECLPLVEL 367 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 Y E KK +F D+ ++L++ +R + + +++DE Sbjct: 368 LRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPE---VRRFYQERYHEVMVDEY 424 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q ++ L S + F VGD KQSIY F A+P+ + + Q Sbjct: 425 QDTNHTQERMLDLL-----------SRGQNRFMVGDIKQSIYRFRQADPQIFSDKFKAYQ 473 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + + +I L +FRS ++L + VF + + D T + + Sbjct: 474 ED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKR 529 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 + + + S S + + ++ A + I +I Sbjct: 530 DP-------NPANRASFLIYEGSKESPEEEADEGLPQAVSAGEVELVIKEIIR------L 576 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMAL 424 + + KDI +L R L ++I +V +D + + ++ Sbjct: 577 HNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLVPDDGAANYLQSVEVLVMLDT 632 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----------- 473 R I + +D + +LKS +F+F ED++ ++ Q + + +K Sbjct: 633 LRTINNPLNDYALTALLKSHMFDFGEDELARLSLQASQEHSQENLYEKLVNALEGRGLHP 692 Query: 474 ---ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529 K QH + + ++ S +D I + G + L Sbjct: 693 ALVNQELQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQDRFYYDMVGTLVNGAQRQANL 752 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLES 585 E++S+ L I +++ +A VR+MT+H +KGLE Sbjct: 753 YALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAAPKEAVRLMTIHKSKGLEF 812 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSRNNIVS 633 VFL++ + + + + Sbjct: 813 KYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQ 872 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-------------------NEK 674 + L+ ++ E RLLYV MTRA +L + + + Sbjct: 873 QNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRLSAGLRSQ 932 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREETI 730 +N + W + F ++ + + + + + + I Sbjct: 933 LNNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRINEPVLFPADDLANNRQSDDI 992 Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------DTKG 766 ++ +D + +L S ++ I P + PS I Sbjct: 993 RRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTDGLDIMDERAAFRPQPSF 1052 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 + G +H+L+Q I + + + A + + L Sbjct: 1053 DLPDFGKKAKVTGAQVGSAVHELMQRIPLDS--RPSMAVLRSALAQVQADEAVKKQIQLP 1110 Query: 827 SITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFE 882 I E + + S E + + ++ ++ G +D + + I +F+ Sbjct: 1111 KIASFFETDLGRLLIENSDRVRREAPFAMLKQDEDSGQEFVLRGILDGYLLFEDRIILFD 1170 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 YKT + + + QL +Y + L SY + LI + ++ ++ Sbjct: 1171 YKTDKYKDSS--ELIARYHGQLDLYAQALSRSYSISQIEKYLILLGGEQLQVV 1221 >gi|262282991|ref|ZP_06060758.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA] gi|262261243|gb|EEY79942.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA] Length = 1227 Score = 331 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 155/995 (15%), Positives = 322/995 (32%), Gaps = 139/995 (13%) Query: 36 SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95 + +L L + ++ F +L L + + + + ++ + Sbjct: 274 EFAGAKYQENVLLALDKLGSLQELSSEQDYFRVLKDVVLLSRASGGRALTITTRKEELKE 333 Query: 96 LKEKLKKSQ-DEFIKIRDRFNTYKMFKSTL-----------ASLTLAKYLNAHYEEAKKK 143 L + + + + +R ++ F+ Y E KK Sbjct: 334 LADTFNQGRKERIEHLRGLESSLYQFEFLEKYQDDSLPLLDLLRDFMSDFTRTYLERKKT 393 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 +F D+ +L+ +R + + +++DE QDT+ Q ++ L Sbjct: 394 ENAFEFGDISHFAIQILEDFP---QVRSFYQERYHEVMVDEYQDTNHTQERMLELL---- 446 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 S+ F VGD KQSIY F A+P+ + R+ Q + +I L + Sbjct: 447 -------SNGHNRFMVGDIKQSIYRFRQADPQIFNDKFRLYQAD----PSQGKLIVLKEN 495 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 FRS ++L + VF + Q + T + + ++ Sbjct: 496 FRSHVEVLEATNDVFKRLMDEQVGEINYDETHYLVAGNPTKA---------SPNPKNRAE 546 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 T + L +ES ++ + I + + + KDI +L R Sbjct: 547 FLLYDSTVASEELSEESISAGEVSLVIKEIIRLHEEEE---------VAFKDITLLTASR 597 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 + + + I +V + + + ++ R I + +D + +LK Sbjct: 598 T----RNDIILAEFDKHNIPLVPDGGEDNYLQSVEVMVMLDTLRTINNPLNDYALTALLK 653 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--------------CGISKFQHVIKYI 488 S +F+F ED++ +I Q + ++ +K N K K + Sbjct: 654 SAMFDFGEDELARIALQNSQEKSQENLYEKIENALTNQGLHSDLILPDLKKKLVLFQKTL 713 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 A+ S +D I + + G + L E++S+ L Sbjct: 714 LSWRIFAKTHSLYDLIWKIYQDRFYYDYVGALPNGTQRQANLYALSLRANDYEKSSFKGL 773 Query: 548 QELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 IS +++ ++A + V +MTVH +KGLE VFL++ Sbjct: 774 SRFISMIDKILENQHDLASVPYAAPQDAVHLMTVHKSKGLEFKYVFLLNMDKAFNRQDTS 833 Query: 604 KKMHIMPSLNDD------------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 + + + + ++ +K ++ E RLL Sbjct: 834 SSIILSRKNGIGIKYIADVEVKYPEEVKPRSIRLSMDTLPYQQNLEEIKLASLSEQMRLL 893 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQR-------------------TWYDMVYDSFHND 692 YV MTRA +L + + +K + W + F D Sbjct: 894 YVAMTRAETKLYLVGKGSQEKLEKRSWGQAEQGLLSASIRSQLTSFQDWIYAIQAVFSED 953 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLEREETIKQLMDEQKIPKKLFSPIK 748 ++ + + + +P + T + E I + +D + +L + Sbjct: 954 HLAFDLRFVSDEDLTADKIGQIHHSNPFDADDLTDNRQSEDIGRALDILESVDRLNCQYR 1013 Query: 749 NDINEPYILNPSTIDTKGKT------------------------NLESLLSDNQTFNRGL 784 + I P + PS I + + G Sbjct: 1014 SAIELPSVRTPSQIKKFYEPIMDTEGLDIMDERVAFRPQPNFDLPDFGRKAKVTGAQVGS 1073 Query: 785 IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842 +H+L+Q I + +S A+ K+ L I E+ + ++ Sbjct: 1074 AVHELMQRIPLDQKPDMAVLKSSLRQVQAEESVKKQID--LNKIASFFESQLGEILLANS 1131 Query: 843 CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900 + E + + ++ ++ G +D + + I +F+YKT + + + Sbjct: 1132 DKLHREAPFAMLKRDETSGQEFVLRGILDGYLLFEDRIILFDYKTDKYKEAS--ELIARY 1189 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +QL +Y + L SY + LI + K+ ++ Sbjct: 1190 HSQLDLYAQALSRSYGISRIEKYLILLGGEKLQVV 1224 >gi|228956727|ref|ZP_04118513.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802915|gb|EEM49747.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pakistani str. T13001] Length = 761 Score = 331 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKKFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|228906067|ref|ZP_04069956.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200] gi|228853476|gb|EEM98244.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200] Length = 753 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + + + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDLQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|47569949|ref|ZP_00240614.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241] gi|228983546|ref|ZP_04143751.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47553395|gb|EAL11781.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241] gi|228776142|gb|EEM24503.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 747 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|229028144|ref|ZP_04184286.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271] gi|228733162|gb|EEL84002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271] Length = 751 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|324324304|gb|ADY19564.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 749 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|52144943|ref|YP_081887.1| ATP-dependent DNA helicase [Bacillus cereus E33L] gi|229154058|ref|ZP_04282183.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342] gi|51978412|gb|AAU19962.1| ATP-dependent DNA helicase [Bacillus cereus E33L] gi|228629338|gb|EEK86040.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342] Length = 751 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|222094063|ref|YP_002528120.1| ATP-dependent DNA helicase [Bacillus cereus Q1] gi|229137129|ref|ZP_04265748.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26] gi|221238118|gb|ACM10828.1| ATP-dependent DNA helicase [Bacillus cereus Q1] gi|228646301|gb|EEL02516.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26] Length = 747 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGNKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|229171137|ref|ZP_04298731.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3] gi|228612315|gb|EEK69543.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3] Length = 753 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|229089419|ref|ZP_04220690.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42] gi|228693896|gb|EEL47588.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42] Length = 751 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|196045338|ref|ZP_03112570.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108] gi|196023922|gb|EDX62597.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108] Length = 753 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|229083589|ref|ZP_04215918.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44] gi|228699721|gb|EEL52377.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44] Length = 745 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 124/726 (17%), Positives = 230/726 (31%), Gaps = 133/726 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K D + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILGGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L + Sbjct: 155 KNELLSADKYAKQISIADPFEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFDR---I 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ ++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNRAQYILVNKLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQSILNAANAVIENNSNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDEIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTTVLDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF++ VF H Sbjct: 566 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 +++ +E RL YVG+TRA ++L + + ++N + + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELLES 651 Query: 696 KKIKLT 701 Sbjct: 652 LNETAP 657 >gi|223936289|ref|ZP_03628202.1| recombination helicase AddA [bacterium Ellin514] gi|223895151|gb|EEF61599.1| recombination helicase AddA [bacterium Ellin514] Length = 1211 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 153/1028 (14%), Positives = 330/1028 (32%), Gaps = 113/1028 (10%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 LK++ + + L + + S ++ N + + L + Sbjct: 191 LKSQLEMFASPEPAQWRTWLIEGITDWRNRWLPALQ-SEKSDNLKATECCRALASLLENP 249 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK- 118 +E+ L + + P+ ++ + + L+ + ++ + Sbjct: 250 SLEQGAEALENIWAADLEWPRGKKTDWRKPLEDFLEEATFLRSLARKTKEVDPLAEDWDW 309 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL--KKRDVSAWIRYKIDQE 176 + + L LA+ +A + AK++ V+DF DL ++ LL + + + + ++ Sbjct: 310 IRGQMTSLLGLAEQFSAAFSLAKRELGVVDFHDLEQHSLQLLWDRNTKQATAVARQWRKK 369 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 + + +DE QD + Q ++++L+ + F VGD KQSIY F A+P Sbjct: 370 LRFVFVDEYQDINDAQDAILKALSRE--------GEESNRFLVGDVKQSIYRFRLADPHI 421 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + G I L +FRS IL ++ +F S R Sbjct: 422 FQNYIETWR------GADGKAIPLVDNFRSREAILNFINSLFEGLMRRDIGSVPYDDEAR 475 Query: 297 HR----------SSRIGQVGTVQLWEQVVSQHDSQCNPQQES-WTSYFDSLPQESSASIL 345 R S V+L ++ +++ P+ E + + + A Sbjct: 476 LRFGNAENRVDLSCAKEDAPRVELHLRLKGSLEAKDMPEGEGEGSRAWTEMMNLEEAEKE 535 Query: 346 ARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR I + + + + R + D+ VL+R + I Sbjct: 536 ARLIGKRLLALKAEKHLAWDEHTKAMRPVTWSDMAVLLRS---PARKAESYAKEFSRLGI 592 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 ++ R + + + DL++L + + + D+ + +L SPL S D++ I + + Sbjct: 593 PLLVA-RGGFYESMEVTDLLSLLQLLDNPLQDVPTLAVLHSPLVGMSLDELATIRLKLTK 651 Query: 463 TETVYE----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + + G K +K +A+ S +L + Sbjct: 652 GPIWMALRRFHESDEEHAGWKKADRFLKNFASWRRLARQVSLSRCLEAVLSETHYAAWLL 711 Query: 519 SRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY---PPTIKRAHSANHNEVRI 574 ++ G + + L + ++ L + ++ + A A + V + Sbjct: 712 TQHRGEQRHANVQRLLGLAQQFDRFQRQGLFRFLRFIDAQQAAETEPEVAAVAEEDAVSL 771 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 M+VH +KGLE PVV + D G ++ + P + + + Sbjct: 772 MSVHQSKGLEFPVVVVADLGKPFNMMDLRAEIMLDDKFGLCPQVKPPHTGQRYPSLPYWL 831 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------SNEKKSNQRTW 681 + K+ E RLLYV +TRA D LI+ + + R + Sbjct: 832 ARQRQKQEMLGEEMRLLYVALTRARDTLILTGSISEPVFNKRWLETSELTAATLLAARNF 891 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 D + + + W YE TH E +P E K + Sbjct: 892 LDWLAGWCTKITGTVLKENQGRNSLFCWKVYEDDTHLIETSPSAASEAEKMEQTSVPMDA 951 Query: 742 K----------LFSPIKNDINEPYILNPSTIDTKGKTNLESLL----------------- 774 P +EP + S + + ++E+ Sbjct: 952 ASWKKLQQKLSWIYPHSAATHEPAKTSVSALRRRMAEDIETEARPLFELKSANPQTKAQQ 1011 Query: 775 --------SDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 G H LQ+ + + + L + Sbjct: 1012 RKNGNNNSERLSAAEVGTTHHSFLQMVSLERVGSVEELRREAKRLEAEQLLTVEEAGSLD 1071 Query: 825 LLSITRLLENPMMTTA--MSCDSYSEVSVSGKIN--------------CPKKDIIISGRI 868 ++ ++ + S E++ + + + ++ +++ G Sbjct: 1072 FPALAAFWKSELGLRIQRQSRHVRRELAFTVRFSPEEVAGNTPKDPELFDEEFVVVQGVA 1131 Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYV 927 D + I++ ++KT E+ + QL +Y + L Y ++ + L ++ Sbjct: 1132 DLTVLLPDQIWLVDFKTDRITSAELAEKVKIYEPQLQLYAQALARIY-HRPVTETQLYFL 1190 Query: 928 SEPKVFII 935 + + + Sbjct: 1191 ALKRSVAV 1198 >gi|206974372|ref|ZP_03235289.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97] gi|217957863|ref|YP_002336407.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187] gi|206747612|gb|EDZ59002.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97] gi|217067002|gb|ACJ81252.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187] Length = 751 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGNKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|268607993|ref|ZP_06141724.1| recombination helicase AddA [Ruminococcus flavefaciens FD-1] Length = 1213 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 145/933 (15%), Positives = 302/933 (32%), Gaps = 109/933 (11%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE--- 138 K + + + +E +KK I + + + + + Y+ Sbjct: 289 KTAHDKPLREMYKKKRESVKKLV--LKAIDSIRSVESDYAESAEVSKMLADVMRKYQDIV 346 Query: 139 -EAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQ 192 K + + F+D +LL D + K + + I+IDE QD++ Q Sbjct: 347 WAMKCEKNSISFDDGERLALELLADTDENGNIIQSEAALKTSEYYDIIMIDEYQDSNNKQ 406 Query: 193 WEVIRSLTEDFFVGK-NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 + + L++++ + +F VGD KQSIY F A P+ + + + + + Sbjct: 407 DLIFKLLSKNYRTDENGQPLYGDNVFLVGDVKQSIYRFRLANPRNFIGTLKSAEPYSVES 466 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L +FRS+ +++ V+ VFS + + D + + G Sbjct: 467 DAPIKSILLNRNFRSSENVIDFVNYVFSEVMSEKCGDIDYSDDEKLYFGAEYYRG----- 521 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT--IFSNGKKR 369 D + D ++ + + A A TI+ M+ T + ++G R Sbjct: 522 -----ISDEKSRTVINFINDDADEEEEDGNINKEAVFTAQTIAEMLHKGTEVVGNDGSTR 576 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D +LVR L + G++ I L+ L R + Sbjct: 577 PCRPSDFCILVRNNVHINKYAEQLSLL----GVPAKGSEESGYLRSREIAVLIDLLRVVS 632 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--------ETETVYEYIQKFANCGISKF 481 + D+ ++ SP++ FS ++ I + EY + F + Sbjct: 633 NPLLDIPMAAVMTSPMYMFSIRELAYIRSLEKGRPLYSVLRGLADGEYEECFDMFLRERC 692 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540 + + + + + + + I + G + L + + E Sbjct: 693 RDFLDSLDSFRMDSVTMTIGELISSIYDTTDFISVMQLYSDGEKKRANLRALIQYAQSYE 752 Query: 541 QN----SYSSLQELISELEQYPPTIKRA----HSANHNEVRIMTVHTAKGLESPVVFLVD 592 ++ L + L++ A +++ + V ++T+H +KGLE P VF+ + Sbjct: 753 ESAAFEGSGGLGGFLRHLDKVMENGDYAQGKVAASSGDYVSVLTLHRSKGLEFPFVFIAE 812 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 T ++ + + K R S L ++ T+ E RLLY Sbjct: 813 TSTKF--QYDSDIVMCSSDGRAGYILYDPKIYRKYRTFQQSILASEEERDTRSEEMRLLY 870 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 VG+TRA +L + K+ + ++ D ++ + ++ I Sbjct: 871 VGLTRAKQKLFVDLKCGEKAMKRVRSKLESCIINDGDISEIVAEADYFSDWIWAALMHHS 930 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP--IKNDINEPYILNPSTIDTKGKTNL 770 ++S + E E++ + E+K+ +F+ I+ +T D T L Sbjct: 931 DFSAIAEKLGLTEAGESVPDVRCEEKLFDCVFAENISPVYIDRDEAAEKTTADEAVYTEL 990 Query: 771 ESLLSDN--------------------------------------------QTFNRGLII 786 E L+SD+ RG I Sbjct: 991 EELVSDSYDRTLSETPAKLSVTEITKKLKQESDNFDYKLKRPRFITGSGKLTGSERGTAI 1050 Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-- 844 H Q + K + A+ + + + + Sbjct: 1051 HTFFQYCDFDNAQADVSAEIEAVAKRGFITSAQADVISPEKASAFFASGLYKRIRAAGDK 1110 Query: 845 SYSEVSVSGKINCPK-----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 + E + D +I G +D + + I +YK+ Sbjct: 1111 VWREKKFMVAVADLDIGSDALDQLKKSDGMIKGIMDLVFEEDDGLIIVDYKSDR--GASA 1168 Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + + QL++Y+ + +K + +Y Sbjct: 1169 KALSERYSMQLTLYKAA-AELTMHKKVKAAYLY 1200 >gi|322411491|gb|EFY02399.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1210 Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 156/1011 (15%), Positives = 307/1011 (30%), Gaps = 129/1011 (12%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 + +L+ + + + K + L + F Sbjct: 237 PKQEIQLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLVIIEKLYEWARDFPH 296 Query: 69 L--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L + T + K + I+ R ++ Sbjct: 297 LYGRQGLSQLARDLTALLPTGNDVTVAGIKYPVFKSLHQKLIRFRHLETILTYQPESIPL 356 Query: 127 LTLAK----YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L L K + Y +AKK+ +F D+ +L++ IR + + +++ Sbjct: 357 LELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPD---IRQTYQDQYHEVMV 413 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q ++ L S+ F VGD KQSIY F A+P+ ++ + Sbjct: 414 DEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 Q +I L +FRS +++L + VF+ + + + I Sbjct: 463 DYQTYPEQ----GKLILLKENFRSQSEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSI 518 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 GQ + +H ++ + D + + +A I + Sbjct: 519 GQ-------KIASPEHRAKLLLYNTDCEDHLDIEDADDISPSEVTIVAKEIIRLYNEQH- 570 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421 + +DI +LV R N Y I V + + + + Sbjct: 571 --------VPFEDITLLVSSRTR----NDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVM 618 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479 + R I + +D + V +L+SP+F F ED++ ++ Q+ + + K + Sbjct: 619 LDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTG 678 Query: 480 ------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI 526 K I+ + A+ S +D I + S+ + Sbjct: 679 THPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRFYFDFVGSQVKAEQAQ 738 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 L + EQ+ Y L I LE ++ V +MT+H +KG Sbjct: 739 VNLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASPKQAVNLMTIHKSKG 798 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNI 631 LE VFL++ + + + + Sbjct: 799 LEFKYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLP 858 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----------------K 675 + L+ +T E RLLYV MTRA Q+ + ++ + + Sbjct: 859 YQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEFTDGKRLGNHLPLALR 918 Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST-------HHPENTPLEREE 728 ++ D + I + E + + Sbjct: 919 ERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQQVLQPDDLKDNRQSA 978 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768 I + +D +L + I+ P + PS + + Sbjct: 979 DITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNEF 1038 Query: 769 --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 S + GL +H+L+Q I + A+ L Sbjct: 1039 TLPEFSKQVKVEASQVGLALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALD--LQ 1096 Query: 827 SITRLLENPMM---TTAMSCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881 + + + + S + Y E + K ++D +I G ID + + +I + Sbjct: 1097 KVEQFFTETALGKRSQTYSTNLYREAPFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELI 1156 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 +YKT + + + + QL +Y + L Y L+ + P++ Sbjct: 1157 DYKTDRY--RHPSDLKTRYQQQLELYAEALSQIYGLPVTKKYLVLMGGPEL 1205 >gi|300856842|ref|YP_003781826.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436957|gb|ADK16724.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 746 Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 107/552 (19%), Positives = 192/552 (34%), Gaps = 115/552 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K N LDF+DLI T L K+ + I ++ +I++DE QDT+ Sbjct: 170 ADVYLLYQKKLKDNNALDFDDLIYKTVQLFKENED---ILEFYQRKFKYIMVDEYQDTNR 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E +R L + + + + VGD+ Q IY++ GA+ K +L ++ Sbjct: 227 SQYEFVRLLAK----------AHKNICVVGDDDQCIYAWRGADIKNILDFEKDYPN---- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RS +IL + V S N + Sbjct: 273 ----AKVIKLEQNYRSKGNILKAANDVISNNSNRKEKML--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +S+ + + + +Y D R IA I ++ + Sbjct: 308 ------RTESENGDKIKLYRAYSDIDEG--------RYIASKIKEIL--------KEDEG 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 Q KD +L R + + + I D IKD+MA +FI + Sbjct: 346 KQYKDFAILYRTNAQSRIFEDVF----MKSNIPYRIIGGLKFYDRKEIKDIMAYLKFINN 401 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 DD+S ++ P + + + KI E++Y + + I+ Sbjct: 402 PLDDVSLRRIINVPKRSIGDSTVQKIQDFANSMNESMYNVLLSIDEVLNLTKRNINCINK 461 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + I+ I + IL ++ + ++ L E ++ E Sbjct: 462 FVSLINSFIRSRDKITVSSLIKEILDTTGYLEELKDSNEADSISRVENLQELVSAAAEFE 521 Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + SL + ++ + + V +MTVH+AKGLE PVVF+ + +F Sbjct: 522 TSSEDPSLSAFLEKVTLVSDVDNFD--QDADSVVLMTVHSAKGLEFPVVFMAGMENGIFP 579 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YVG+TRA Sbjct: 580 GTQSLNEF----------------------------------KEMEESRRLCYVGITRAK 605 Query: 660 DQLIICKHSNTS 671 ++L + Sbjct: 606 EKLYMTSAETRR 617 >gi|196040164|ref|ZP_03107466.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99] gi|196029019|gb|EDX67624.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99] Length = 751 Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|28211985|ref|NP_782929.1| DNA helicase [Clostridium tetani E88] gi|28204428|gb|AAO36866.1| DNA helicase [Clostridium tetani E88] Length = 639 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 111/608 (18%), Positives = 203/608 (33%), Gaps = 116/608 (19%) Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 +N+K D + + K + + + +A + Y++ K N L Sbjct: 27 SLNEKDFDDRSLINKIGQQKDNLISPEKFRREIGDNYRLGKIAN-VYELYQKKLKNNNAL 85 Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 DF+DLI T +L KK + I + +I++DE QDT+ Q+E+++ L Sbjct: 86 DFDDLIYKTVELFKKNEE---ILEFYQDKFKYIMVDEYQDTNKSQYELVKLLAL------ 136 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 + + VGD+ Q IY++ GA+ + +L ++ + I+L ++RS Sbjct: 137 ----KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPQ--------VKTIKLEENYRSM 184 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 ++IL+ + V N + + + + + Sbjct: 185 SNILSAANDVIKNNSNRKVKKL---------------------------RTSNSQGEKVK 217 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 + + D A+ + I +I + KD +L R + Sbjct: 218 VYRANSDIEE--------AQFVINEIKKLIKEENR---------TPKDFSILYRTNAQSR 260 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 + + KI D IKD+MA + I + DD+S ++ P Sbjct: 261 IFEEVF----MRNKIPYKIVGGLKFYDRKEIKDIMAYLKLINNPLDDVSLKRIINVPKRG 316 Query: 448 FSEDDIFKI-CTQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPH 501 + I KI R E +Y + AN S + I+ I Sbjct: 317 IGKSSIEKIENFSREMEECIYSTLLDIDSIGIANRAASSVNKFVSLINSFIRKKDEVKVS 376 Query: 502 DFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQY 557 I+ ++ E I+ L E ++ + E + +L + ++ Sbjct: 377 VLIQEIIEYTGYMKELQDSKNIEDLSRIENLKELVSAAVDFEISSEDKTLSAFLEQIALV 436 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + V +MTVH+AKGLE P VF+V + +F Sbjct: 437 SDIDNYD--EQSDAVVLMTVHSAKGLEFPAVFMVGMENGIFPGTQSLDDI---------- 484 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 EE RL YVG+TRA ++L + ++ Sbjct: 485 ------------------------DEMEESRRLCYVGITRAKEKLYMTSAERRMVFGRTV 520 Query: 678 QRTWYDMV 685 D + Sbjct: 521 FYPESDFI 528 >gi|195977957|ref|YP_002123201.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|251764553|sp|B4U2H1|ADDA_STREM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|195974662|gb|ACG62188.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1214 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 151/1015 (14%), Positives = 323/1015 (31%), Gaps = 129/1015 (12%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 ++ + + + + K + L+ F Sbjct: 237 PDQVVDALLACMQDTADQLRDLTDMEGYAQTTKAGKLTAKYTKHLKMIDNLYEWASHFDS 296 Query: 69 L--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L + + + K Q++ + R + +L Sbjct: 297 LYGKERLGQLAQELTALLPSGADITVAGHKYPIFKSLQEQLVGFRHLETILAYQQESLPL 356 Query: 127 LTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L + + Y AK + +F D+ ++L++ + IR + +++ Sbjct: 357 LEVLQAFVISFSEAYLAAKMQENAFEFSDIAHFAIEILQQ---APDIRQAYQGHYHEVMV 413 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q ++ L S+ F VGD KQSIY F A+P+ ++ + Sbjct: 414 DEYQDNNHMQERLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 Q + +I L +FRS +++L V + VFS + + + Sbjct: 463 DYQSNPEH----GKLILLKENFRSQSEVLNVTNAVFSRLMDESLGEITYDDKHQLVAGSE 518 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 Q + +++ + S D + +A I + + Sbjct: 519 AQKQLHPENRAQLLLYNTDQAQEGTEEASTNDGISAG-----EVTLVAKEIIRLYNEE-- 571 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421 + +DI +LV R I + N Y I V + + + + Sbjct: 572 -------KVAFEDITLLVSSRTRNDTIFQVF----NQYGIPLVADGGQENYLKSVEVMVM 620 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA------- 474 + R I + +D + V +++SP+F+F ED + +I Q + + K + Sbjct: 621 LDTLRSINNPLNDYALVALMRSPMFSFDEDQLARISLQSSSQDQPQAFYDKLSNSLRGQG 680 Query: 475 -------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI 526 ++K + + + A+ S ++ I + S+ + Sbjct: 681 EHPGLIGQELMTKLVDFDRTLRDWRQFAKLHSLYELIWKIFNDRFYFDFVASQPKAEQAQ 740 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 L + EQ+ Y L I LE + V +MT+H +KG Sbjct: 741 ANLYALAIRADQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVERPKHAVNLMTIHKSKG 800 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQSKSRNNI 631 LE VF+++ + + + + + Sbjct: 801 LEFHYVFILNFDKRFAMADLQAPIILNRDEGIGIKYVANVKELLRDEKLASLKVTMETLP 860 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SN 672 + L+ +T E RLLYV MTRA ++ + ++ S Sbjct: 861 YQLNKQQLRLATLSEQMRLLYVAMTRAEKKVYLVGKASKEKIQAKTADNSSEGRLALASR 920 Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREE 728 E+ + + W + +F ++ ++ + + + + + + E Sbjct: 921 ERLLSFQDWLLAITATFSKEDLFIDVRFVDDSDLTAEAVGQLRSSGLLQADDLKDNRQTE 980 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768 I + +D KL + + I P + PS + T + Sbjct: 981 DIARALDMLDKVSKLNASYQAAIELPTVRTPSQLKTLYEPLMDTDGVDIIDQPYHRPKSF 1040 Query: 769 --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-L 825 S + G +H+L+Q I + + + A+ L + Sbjct: 1041 ELPDFSKKKAVEPSQVGSSLHELMQRIPMSDQITAGDIEQAL---QLVSADAEVKARLDI 1097 Query: 826 LSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880 +T + + Y E + K + ++ ++ G ID + + I + Sbjct: 1098 KKVTAFFATTELGKLLQEHHQRLYREAPFAILKKDSLSQEQYVVRGIIDGYLLFEDRIVL 1157 Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 F+YKT + Q+ + + Q+ +Y + L SY + L+ + ++ ++ Sbjct: 1158 FDYKTDRY--QQSAELKQRYQQQMDLYAEALSQSYGIARVEKYLVLMGGSQLEVV 1210 >gi|229182687|ref|ZP_04309928.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1] gi|228600772|gb|EEK58351.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1] Length = 749 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|228931796|ref|ZP_04094692.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827776|gb|EEM73514.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 747 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|229119951|ref|ZP_04249206.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201] gi|228663417|gb|EEL19002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201] Length = 751 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|300118924|ref|ZP_07056635.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1] gi|298723540|gb|EFI64271.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1] Length = 747 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|196034734|ref|ZP_03102142.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W] gi|218901494|ref|YP_002449328.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820] gi|228925549|ref|ZP_04088638.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944101|ref|ZP_04106480.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195992777|gb|EDX56737.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W] gi|218539393|gb|ACK91791.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820] gi|228815490|gb|EEM61732.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834027|gb|EEM79575.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 751 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|49479079|ref|YP_034625.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|225862343|ref|YP_002747721.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102] gi|49330635|gb|AAT61281.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|225788890|gb|ACO29107.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102] Length = 753 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|152974126|ref|YP_001373643.1| ATP-dependent DNA helicase PcrA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022878|gb|ABS20648.1| ATP-dependent DNA helicase PcrA [Bacillus cytotoxicus NVH 391-98] Length = 741 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 125/751 (16%), Positives = 239/751 (31%), Gaps = 133/751 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNILAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K D + L + + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILARISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L+ + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSAEKYAKQISIADPFEKLSSDVYTEYQKRLLKNNSLDFDDLIMTTIHLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ ++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNRAQYMLVNKLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RST +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AKVILLEQNYRSTKNILNAANAVIENNINRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TENQIGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + + + D VL R + ++ + I Sbjct: 335 YFVAKKIRDEVQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTTVLDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E ++ LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLESEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF++ VF H Sbjct: 562 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 +++ +E RL YVG+TRA ++L + + ++N + + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELIEP 647 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 +T + + Sbjct: 648 LNETKPKRETFGAKAKVAATTTRSRSQIVRP 678 >gi|254686688|ref|ZP_05150546.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CNEVA-9066] gi|254724764|ref|ZP_05186547.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A1055] Length = 747 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|158319600|ref|YP_001512107.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs] gi|158139799|gb|ABW18111.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs] Length = 739 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 104/572 (18%), Positives = 187/572 (32%), Gaps = 118/572 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K N LDF+DLI+ T L + + + +IL+DE QDT++ Sbjct: 185 AEIYRLYQDRMKSNNALDFDDLIMKTVQLFQTHPT---VLRYYQNKFKYILVDEFQDTNM 241 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +I L + S L VGD+ QSIY + GA+ + +L ++ Sbjct: 242 AQYTLISLLAK----------SHGNLCVVGDDDQSIYGWRGADIRNILGFEKDFPN---- 287 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RST IL + V + + + L Sbjct: 288 ----TQVVKLEQNYRSTKSILDAANMVVANNTDRKSKK---------------------L 322 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + + + + A I+ TI + + Sbjct: 323 W-------TDNQDGEIIQYYRANNEYDE-------ASFISGTIEKLNEEENRP------- 361 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + + + I D IKD++A R I + Sbjct: 362 --YSEFAILYRTNAQSRALEEML----MKRAIPYKIYSGTRFYDRKEIKDILAYLRTIEN 415 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQ------H 483 DD+S ++ P I + + E+ + + + Sbjct: 416 PVDDVSVKRIINVPKRGIGIKSIDRFDEYAEGKNESFFGALLHVDQMPDQSTRVKVQTNK 475 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN- 539 + I L S D I ++ E + L EFL+ T Sbjct: 476 FTELIQSLRDRQDEMSVTDIVKEIYEKTGYIDALMAEDKIEAESRIENLQEFLSVTKDFD 535 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E + +L+E L + + N V +MT+H+AKGLE PVVF+ +F Sbjct: 536 ENSEVKTLEEF---LARTSLETTLDENDEENTVTLMTLHSAKGLEFPVVFIPGMEESIFP 592 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 +++ EE RL YVG+TRA Sbjct: 593 SAMSL-----------------------------------QENNLEEERRLCYVGITRAR 617 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 ++L + + ++N + + Sbjct: 618 EKLYMSHAMTRTLYGRTNANPISRFLGEIPEE 649 >gi|301052017|ref|YP_003790228.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|300374186|gb|ADK03090.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 747 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|228913033|ref|ZP_04076672.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846438|gb|EEM91451.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 747 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 225/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEYVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|167634189|ref|ZP_02392511.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442] gi|170688392|ref|ZP_02879601.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465] gi|254742291|ref|ZP_05199977.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Kruger B] gi|167530503|gb|EDR93218.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442] gi|170667724|gb|EDT18478.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465] Length = 751 Score = 329 bits (843), Expect = 2e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|229194679|ref|ZP_04321472.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293] gi|228588782|gb|EEK46807.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293] Length = 753 Score = 329 bits (843), Expect = 2e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|118476054|ref|YP_893205.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al Hakam] gi|118415279|gb|ABK83698.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al Hakam] Length = 753 Score = 329 bits (843), Expect = 2e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 225/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEYVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|30260477|ref|NP_842854.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames] gi|47525567|ref|YP_016916.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames Ancestor'] gi|254739087|ref|ZP_05196789.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Western North America USA6153] gi|254761884|ref|ZP_05213733.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Australia 94] gi|30253845|gb|AAP24340.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames] gi|47500715|gb|AAT29391.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames Ancestor'] Length = 747 Score = 329 bits (843), Expect = 2e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 31 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 91 FHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617 >gi|49183319|ref|YP_026571.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne] gi|65317729|ref|ZP_00390688.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis str. A2012] gi|165871400|ref|ZP_02216048.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488] gi|167640142|ref|ZP_02398409.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193] gi|170708734|ref|ZP_02899171.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389] gi|177653645|ref|ZP_02935784.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174] gi|190567423|ref|ZP_03020337.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I] gi|227812969|ref|YP_002812978.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684] gi|229599888|ref|YP_002864922.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248] gi|254756067|ref|ZP_05208096.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Vollum] gi|49177246|gb|AAT52622.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne] gi|164712884|gb|EDR18413.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488] gi|167511953|gb|EDR87332.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193] gi|170126313|gb|EDS95203.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389] gi|172081225|gb|EDT66300.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174] gi|190561550|gb|EDV15521.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I] gi|227005824|gb|ACP15567.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684] gi|229264296|gb|ACQ45933.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248] Length = 751 Score = 329 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V+ N + ++ TL Sbjct: 35 GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + +K + + I+ K + + L + Sbjct: 95 FHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K L + Y++ KN LDF+DLI+ T L ++ Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ L F + L VGD QSI Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ + +I L ++RS+ +IL + V N + Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + S+ + A Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I + I + D VL R + ++ + I Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465 D IKD++A R I + +D++SF ++ P I K I + Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + + + + +H +++ ++ S + ++ R + Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575 E + LDEFL+ T E Q+ SL +++L + EV +M Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVF+V +F H Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +++ +E RL YVG+TRA ++L + Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621 >gi|227486420|ref|ZP_03916736.1| ATP-dependent exoDNAse beta subunit [Anaerococcus lactolyticus ATCC 51172] gi|227235601|gb|EEI85616.1| ATP-dependent exoDNAse beta subunit [Anaerococcus lactolyticus ATCC 51172] Length = 1121 Score = 329 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 152/945 (16%), Positives = 312/945 (33%), Gaps = 138/945 (14%) Query: 49 KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108 A+ + + + + + S +K+ I EI DL ++ ++D + Sbjct: 238 LAEDYEMLAGIRDQIDDWDNFSKALANKKYATFAKKIKTEIGDD--DLVNEINSARDAYK 295 Query: 109 KIRDRFNTYKMFKSTLAS--------------LTLAKYLNAHYEEAKKKNCVLDFEDLII 154 + A L K +++ K LDF DL Sbjct: 296 AEIKELEGLIVNTDAKALDFIRTKEDVLFRELYKLTKDFKETFDKKKSAKDYLDFNDLEH 355 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL R K+ + +I DE QD++ IQ ++ L D R Sbjct: 356 EFISLLDN----QTAREKLRAKYKYIFFDEYQDSNEIQNYIVDKLKSD-----------R 400 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 LF VGD KQSIY F A P + + +K + I L +FR+ IL Sbjct: 401 NLFFVGDVKQSIYGFRRARPDLFIEKLDSYEKEKESM-----RINLNENFRTDRLILDFN 455 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + +F + +++ HR + +++ S Sbjct: 456 NYIFDRLMT-KEMADIDYKKGGHRLNY--------------------GKEEKDLLDSARV 494 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 + + + +A I +++ + +DI +L+R ++ + Sbjct: 495 GVKVLAKSVREETYLASLIKDLLAEG----------YEYRDIAILLRNGTESYKYEEAFK 544 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 I + + T + + L +++ + DD+ + +L+S +F+ EDD+ Sbjct: 545 ----KADIPYFNDISKVSTQASEVGFFINLLKYLTNPNDDIILLSVLRSVIFDIDEDDLA 600 Query: 455 KICTQRHETETVYEYI-QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 +I + + + K + I +L + +DF + Sbjct: 601 RIKLAFASYKFYEAFDAYNKEDELYEKIKKFKALIEDLKDKLAILNLYDFANYLFEKSGL 660 Query: 514 RQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHS 566 ++R + I+ +D ++ + + + L ++ T R S Sbjct: 661 YDFLLARDLAEDRINNIDSVIDMMADYDSVNDNGLYGFVNFFANLESTRSDSITPTRDLS 720 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 + VRIMTVH +KGLE +V L + + + + + K Sbjct: 721 EGEDLVRIMTVHKSKGLEFKIVILAGADKGFNKQVDP--IIFDEKIGIGINVADYENKIK 778 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 + +I+ ++ ++E R+LYV +TRA ++L I + + ++ + Sbjct: 779 IPSINRKLIIEKSREDDKKEEMRILYVALTRAEERLYITGNFDKNSSAFEKVYKNESYLT 838 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWST----------HHPENTPLEREETIKQLMDE 736 + H + + + N ++ + ST + + E++ +++E Sbjct: 839 LNSHLEWIMASLSFDNITSEFFTGVKKQSTFDKRISFDFIEDVPDLSVSHNESLYDILNE 898 Query: 737 QKIPKKLFS-------PIKNDINEPYILNPSTIDTKGK---------------------- 767 + K L + L S + Sbjct: 899 KANTKILKQIQTKLDFTYPGKDDIRKSLKKSVTELAKDFNAESDGYETFDAEGFSRNISF 958 Query: 768 --TNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + +G +IHK+ Q + +N I K KE Sbjct: 959 KKPSFMEEKKAYSPTEKGSLIHKIFQKLPMKVYTAGTLENEIDRLIEKKIFDKTIKEIVE 1018 Query: 824 LLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881 + + N ++ + + SE S ++G+ID I Q I + Sbjct: 1019 I-DKLLGFYTNSLIAELIGENIPKRSEESFLMTY----DGYYVNGQIDLIFEGQDEIILI 1073 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 ++KT ++ T+ QL+IY++ ++++ K + LIY Sbjct: 1074 DFKTDMIKRED------TYQTQLAIYKQAIEEAL-GKKVTKSLIY 1111 >gi|104774001|ref|YP_618981.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123251916|sp|Q1GAA9|ADDA_LACDA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|103423082|emb|CAI97803.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1227 Score = 329 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 156/1017 (15%), Positives = 318/1017 (31%), Gaps = 142/1017 (13%) Query: 29 SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88 +D + + + +++ T +R L + T + N + Sbjct: 244 ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302 Query: 89 INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 +++ ++KE K+ + K + A+ + + E K Sbjct: 303 FVEEAKEVKEAGKQLVFNVYTGFYASSNADQQALLAKGAEIASAAAEVELAFIDRFNELK 362 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + + VLDF D+ ++L + ++ + R I++DE QDT+ +Q +I+ L Sbjct: 363 RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + LF VGD KQSIY F AEP + + + + I Sbjct: 422 --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS+ + V+ +F D + + + E V + Sbjct: 471 AENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDIL 377 + + D + I +I T + G+ R + DI Sbjct: 531 SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIA 579 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L R + + + Y + + D + +M+ + I + + D+ Sbjct: 580 ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIA 495 V +L+SP+FNFS D+ +I K ++ + + + +L + Sbjct: 636 VAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695 Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + I + + G + L E + + L + I+ + Sbjct: 696 LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755 Query: 555 EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 + N V++MT+H +KGLE PVVF++ + + I +++ Sbjct: 756 ARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVL 815 Query: 610 PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + P + ++ L K+ EE RLLYV +TRA +LI+ + Sbjct: 816 DASGLGLSFAYPFDEAEYRADTLANVWLKIAKKQKLLEEEARLLYVALTRAKQKLILAAN 875 Query: 668 SNTS------------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 ++ K + + + + K + Sbjct: 876 IKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747 + + + + P+ + ++ + + P Sbjct: 936 LATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYTFSQGGYPY 995 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780 + S I +E L+D+ + Sbjct: 996 LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055 Query: 781 NRGLIIHKLLQVIFTLPEH---------------KRKNFITSYCTKNAKLW--PAKEYKN 823 G H +LQ + + S + A W + K+ Sbjct: 1056 ELGTASHLVLQYYDYAKGDKNAIDSCIAGLVEKGRLSQTLASMLDREALSWFVKSDFAKD 1115 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 RL T +S + + I++ G ID ++ I +F+Y Sbjct: 1116 FYQQPDRLHREENFATILSPKTLF-----KDFSDFPGKILVHGTIDGYYEAENGIILFDY 1170 Query: 884 KTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 KT H P++ E + + QL +YE+ L +S L L+ +S ++ + Sbjct: 1171 KTDHVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCREIVEVD 1227 >gi|295401728|ref|ZP_06811694.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius C56-YS93] gi|312112464|ref|YP_003990780.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1] gi|294976215|gb|EFG51827.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius C56-YS93] gi|311217565|gb|ADP76169.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1] Length = 730 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 123/694 (17%), Positives = 232/694 (33%), Gaps = 136/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L QV+ N + ++ Q L + + Sbjct: 32 GAGSGKTRVLTHRIAYLLAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEEIWIST 91 Query: 66 FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106 F + L T + + KNI+ + I+ K D + L Sbjct: 92 FHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNILKEKNIDPKKFDPRSILGTISSA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K + + + Y++ +N LDF+DLI+ T L ++ Sbjct: 152 KNELLSPEKFAKKAGNYYE--KIVSDVYEEYQKRLLRNHALDFDDLIMTTIQLFER---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I IDE QDT+ Q+ +++ L F + + VGD QSI Sbjct: 207 PEVLEHYQYKFQYIHIDEYQDTNRAQYMLVKMLASRF----------QNICVVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L ++ +I L ++RST IL ++V N + Sbjct: 257 YRWRGADIQNILSFEKDYPN--------AKVILLEQNYRSTKRILQAANEVIENNVNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW Q+ + + + A Sbjct: 309 KK---------------------LW-------TENPEGQKIVYYEAMNEADE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I + + + D VL R + ++ + I Sbjct: 334 QFVAGKIKEYVESGKR---------RYSDFAVLYRTNAQSRVMEEVL----LKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + DD+S + ++ P + KI + Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPNDDISLLRIINVPKRGIGASTLDKIVNYASENELS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 V+E + + + + + + + + ++ S + +L R+ + Sbjct: 441 VFEALGELEHIGLSARIAASLLEFRRMLEQWGQLQEYVSVTELVEEVLDKSGYREMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYP--PTIKRAHSANHNEVRI 574 E + +DEFL+ T E + SL +++L + A + + V + Sbjct: 501 NTLEAQSRLENIDEFLSVTKHFENVSEDKSLIAFLTDLALISDIDQLNDADGEDGDAVVL 560 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H+AKGLE PVVFL+ +F H + Sbjct: 561 MTLHSAKGLEFPVVFLIGMEEGIFPHSRSLEDEDEMEEE--------------------- 599 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 RL YVG+TRA ++L + Sbjct: 600 -------------RRLAYVGITRAEEELFLTSAQ 620 >gi|222152848|ref|YP_002562025.1| ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J] gi|251764571|sp|B9DRV0|ADDA_STRU0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|222113661|emb|CAR41583.1| putative ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J] Length = 1220 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 157/1011 (15%), Positives = 319/1011 (31%), Gaps = 133/1011 (13%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 +E+ + + + + + M K + L F Sbjct: 236 PDETIDALLQSMKETAISLRDLTDLEEYGQMTKAGKPTAKYVKHLTMIEALNDWSMHFDS 295 Query: 69 LSSFFLTQKFT-------PQKNIITQEINKK--SPDLKEKLKKSQDEFIKIRDRFNTYKM 119 K P +T K D++ K+ + + + + T + Sbjct: 296 YYGKSQIGKLAQDLSALLPSGTDVTVAGQKYPIFKDIQSKISQFRHLATLLTYQPETLPL 355 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + Y EAKK +F D+ ++L+ + IR + + Sbjct: 356 LLELQS---FVIDFTEAYLEAKKSENAFEFTDITHFAIEILQNEEA---IRKVYQSKYHE 409 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QD + +Q ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 410 VMVDEYQDNNHMQECLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQ 458 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + Q+ N +I L +FRS ++++ + VFS + ++ Sbjct: 459 KFKDYQENPEN----GKLILLKENFRSQSEVIDATNAVFSHLMDEAVGDILYDDNHYLKA 514 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 Q V +D+ E D E ++ + + +I Sbjct: 515 GSDKQKIRYPENNCQVLIYDTDQKDNGEDEHDKEDERRTEGQETLSPGEVNILVKEIIR- 573 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAI 418 ++ + DI +LV R L N Y I V + + + Sbjct: 574 -----LHQEEAVPFSDITLLVSSRT----RNDLLFKTFNQYDIPLVSDGGQENYLKSVEV 624 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK------ 472 ++ R I + +D + V +++SP+F F+ED + +I Q + V + +K Sbjct: 625 MVMLDTLRSINNPLNDYALVALMRSPMFAFNEDQLARIALQDSQEGKVEHFYEKVLNSLS 684 Query: 473 --------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGN 523 + + + ++ ++ S ++ I + +S Sbjct: 685 HQGQHAELITQELHDQLELFDQSLNAWRDYSRTHSLYELIWKIYNDRFYFDFVGLSPKAE 744 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTVHT 579 + L + E+ ++ L IS ++ + V +MT+H Sbjct: 745 QAQANLYALALRANQFEKTTFKGLTRFISMIDNILNTENDLADVDLAKPKEAVNVMTIHK 804 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQSKSR 628 +KGLE VF+++ + + + + + Sbjct: 805 SKGLEFKYVFILNCDKKFSMADIHSPLILSRQKGVGIKFLADVKKELNATQLPSVKLYLE 864 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS----------------- 671 K LK +T E RLLYV MTRA +L + + Sbjct: 865 TLPYQINKKELKIATLSEQMRLLYVAMTRAEKKLYLIGKGSQEKLSQKFDTKREGQHLPK 924 Query: 672 --NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH----PENTPLE 725 E +N + W ++ F + + I S + Sbjct: 925 ALRESITNFQDWLLAIHQVFDSKDLSFTIDFVTDNELGPESIGSISHQSNIMIDDLRDNR 984 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID---------------------- 763 + ++I + +D +L + IN P + PS + Sbjct: 985 QSDSIARAIDMLNNVNQLNQKYEAAINLPTVRTPSQLKKFYQPIMDIDGVEILADKSQTP 1044 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 T + S + G +H+L+Q I K+ + A E + Sbjct: 1045 TTFELPQFSKAKQVTSSQVGSALHELMQRIKITSHVTEKDI------QQASQLVDAEAEV 1098 Query: 824 LLL----SITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQISIS 874 + + E + + Y E + ++ +I G +D + Sbjct: 1099 MAKIDLHKVKSFFEATELGRLIQVHHDKLYREAPFAMLKTDPQSQEKFVIRGIVDGFLLL 1158 Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 + I +F+YKT H+ + + + Q+++Y + L+ +Y ++ LI Sbjct: 1159 EDKIILFDYKTDHY--KTPLEMKLKYQEQMALYAESLRKAYDISTIESYLI 1207 >gi|288554983|ref|YP_003426918.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4] gi|288546143|gb|ADC50026.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4] Length = 742 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 128/755 (16%), Positives = 241/755 (31%), Gaps = 140/755 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L ++ N + + L Sbjct: 33 GAGSGKTRVLTHRIAYLLREKAIAPWNVLAITFTNKAAREMKDRVAKLVGPVAEDIWIST 92 Query: 66 FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + ++ + + I+ K D + L Sbjct: 93 FHSMCVRILRRDIDRIGYNRNFTILDSSDQLSVIKQILKNKNIDPKKFDPRSILGTMSGW 152 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 +++ + M ++T A + Y++ KKN LDF+DLI+ T +L K + Sbjct: 153 KNELKKPDDC--MRQATGPYDQTAAEVYVEYQKQLKKNHALDFDDLIMKTIELFK---LV 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +IL+DE QDT+ Q+ ++R L++ + + VGD QSI Sbjct: 208 PEVLEFYQRKFQYILVDEYQDTNKAQYMLVRMLSDKYE----------NICVVGDSDQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L + ++I L ++RST IL +KV N + Sbjct: 258 YRWRGADIANILSFEEDYPN--------ATVILLEQNYRSTKMILNAANKVIENNFNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ P+ + + + A Sbjct: 310 KN---------------------LW------TENDDGPKIGYYGA--------DTEQSEA 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + + I + + DI +L R + +I I Sbjct: 335 QFVVEKIREATRSGEHTN---------SDIAILYRTNAQSRVIEEYF----VKSNIEYNI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DD+S ++ P + KI + + Sbjct: 382 VGGTKFYDRKEIKDVLAYLRLIANPDDDISLQRIINVPKRGIGATTVDKIGAYAVEQGLS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++ +Q+ + K + + I + ++ S + +L R + Sbjct: 442 LFAALQEIEQVGLTARTVGKLKDFRDQLSHWIQMQEYLSVTELVEELLEKTGYRDMLRNE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANH---NEVR 573 E + +DEF+ T E+++ SL +++L K + + Sbjct: 502 QSIEAQSRLENIDEFITVTNEFEKSNDDKSLVAFLTDLALVADIDKLDDENEGKPKDAIT 561 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE P+VFL+ +F H Sbjct: 562 LMTLHSAKGLEFPLVFLIGMEEGIFPHSRSLFEAEEMEEE-------------------- 601 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 RL YVG+TRA QL I + K+N + + Sbjct: 602 --------------RRLAYVGITRAEKQLYITNARMRTLYGKTNTNPPSRFISEIPEECL 647 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 A + P P R Sbjct: 648 EQVNEDKPTPA---WMKASRGTASAPAAKPKVRAS 679 >gi|315640911|ref|ZP_07896007.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus DSM 15952] gi|315483329|gb|EFU73829.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus DSM 15952] Length = 1226 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 143/1016 (14%), Positives = 323/1016 (31%), Gaps = 135/1016 (13%) Query: 25 YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84 Q S++ + + + + + Q + L + F + + +K Sbjct: 241 AMQQSEVEALLEKAYQLLAAEFEQLVALKEAILSDQIDDMYVRLTTPIFAKRYPSYRKEE 300 Query: 85 ITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMFKSTLASLTLAKYLNAHYE 138 + + +++ +++++K D + + L + ++ Sbjct: 301 V-KILSEPIKRIRDEVKSQFDTMKEYFPYDPKVMGDLMRQSQPLVKEISRLTELFAERFQ 359 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 + K + +LDF DL T +L + Q + +L+DE QD + +Q ++ Sbjct: 360 QRKLEKGLLDFNDLEHWTLAILTNEQADVSPQTFYRQHFSEVLVDEYQDINRLQQAILER 419 Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + + ++P LF VGD KQSIYSF A+P + + ++ Q I Sbjct: 420 VAQ---------ANPGNLFMVGDVKQSIYSFRLADPTLFIDKYDHYRQH-----QDGEKI 465 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L +FRS ++L+ + +F + + D + + + +E + + Sbjct: 466 DLRENFRSREEVLSFTNFIFEQLMDRKVGQIDYQDEAKLVAGATYYEDQSEFFEPEILLY 525 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKD 375 + + + + ++ A +A I ++ + K R I+ D Sbjct: 526 EKENEEELAFF---------DTKAEGEIHLVAQKICQLLNNQQTILDRKSMTMRPIRYAD 576 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I++L R + + + + Y++ + ND I+ +++L + I + D+ Sbjct: 577 IVLLTPTRGNHLKMVDIFKE----YELPLELNDAQNYFQTTEIQVILSLLQIIDNPLQDI 632 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYIQKFANCGISKFQHVIKYI 488 FV +L+SP+ +ED + + + + + + K Q + Sbjct: 633 PFVSVLRSPIVGLTEDQLVTLRLAKRDVTFYQAFQVYLKNGTDDVNDPLQRKVQKFANQL 692 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 +A+ + D LI + G + L ++ E+ S+ L Sbjct: 693 ERWRKVARKVAVADLLWLIYDETAYPDFMLGLPSGKQRYANLMALVSRAEDYEKTSFRGL 752 Query: 548 QELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + I +E+ K + VR+MT+H +KGLE PVVFL+D ++ Sbjct: 753 YQFIRFVEKMREKDKDLVEPVAEMTGDAVRVMTIHASKGLEFPVVFLMDATKELNMQDLR 812 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVS------------------------------ 633 K + + + V+ Sbjct: 813 KNYLLDENEGIGIQYLSSQRVHYATLPFVALKQVKLRKLLSEEMRKLYVALTRAEQKLYL 872 Query: 634 --------DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + K EE L + L+ K Q + Sbjct: 873 VGSYKNKQEAYKKWLTVQYEEEQFLDEASRLVSKTSLMDWIGKTLVRHPKMQQYFEHAES 932 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + + E + ++ H + LE + + + + Sbjct: 933 IVKTIDHPAKFALHWYTAEEILEQRSTWFAQLHVTHPTLETAKEYETIPTVLQRRLDFQY 992 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESL------------------------------LS 775 P + + S I + + Sbjct: 993 PHQKATMTTSYQSVSEIKRLYQDPDDMEDNRYDWFASQEDKKGYRLVNQGLAVPEFMKTK 1052 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA--KLWPAKEYKNLLLSITRLLE 833 G H++LQ + L + ++ + + +P + Sbjct: 1053 RLDPTFIGQATHRILQHLP-LATDWERVAFDAWLEEFYLHQGFPDDLIAAIDHEALWWFY 1111 Query: 834 NPMMT---TAMSCDSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQNIFIF 881 + + + E S +++I G ID + + ++ Sbjct: 1112 ESDLRKMMSLHADCVQREQPFSMLRQAKTIYHNFGDDDAEVLIHGIIDGYIEFEDEVILY 1171 Query: 882 EYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFII 935 ++KT H + E + ++ QL +Y++ L+++ K + LI +S+ K+ + Sbjct: 1172 DFKTDHISAAKTEEALIDSYRGQLMLYKEALQNAL-KKPVESVYLILLSQKKMVTL 1226 >gi|313123657|ref|YP_004033916.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280220|gb|ADQ60939.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1227 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 156/1030 (15%), Positives = 310/1030 (30%), Gaps = 141/1030 (13%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 L F KY + + +++ T +R L + Sbjct: 233 LADKLAALMAEADFDHEKFAKY-----QPAFTAFATSLASYRESLATDDPFDRQRELLAA 287 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLA 125 T + N + +++ ++KE K+ + K + A Sbjct: 288 C-QFDGTLRTNKEIADFVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASA 346 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDE 184 + + + E K+ + VLDF D+ ++L + ++ + R I++DE Sbjct: 347 AAEVELAFIDRFNELKRADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDE 406 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q +I+ L + LF VGD KQSIY F AEP + + Sbjct: 407 YQDTNALQDGLIQRL---------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEY 457 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + + I +FRS+ + V+ +F D + + + Sbjct: 458 GQENSADK---QRIIFAENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYD 514 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 E V + + + D + I +I T Sbjct: 515 PEAALPTETEVLYQEDSSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIF 563 Query: 365 N---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 + G+ R + DI +L R + + + Y + + D + + Sbjct: 564 DPKTGQTRPVSYGDIAILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVI 619 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGIS 479 M+ + I + + D+ V +L+SP+FNFS D+ +I K + Sbjct: 620 MSYLKIIDNPDQDIPLVAVLRSPIFNFSSSDLAEIRLVNKSVSFYTALRTYAKKDTDLAA 679 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538 + + + + +L + + I + + G + L Sbjct: 680 RCRDFLAQLQDLRDFSLSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASA 739 Query: 539 NEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 E + + L + I+ + + N V++MT+H +KGLE PVVF++ Sbjct: 740 YESSGFKDLYQFINFIARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGL 799 Query: 594 GSQVFSHKHIKKMHIMPSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 + + I +++ + P + ++ + L K+ EE RLL Sbjct: 800 EHRYNYQQDITGSYVLDASGLGLSFAYPFDKAEYRADTLANAWLKIAKKQKLLEEEARLL 859 Query: 652 YVGMTRASDQLIICK----------------HSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 YV +TRA +LI+ + + + + + Sbjct: 860 YVALTRAKQKLILAANIKLPARTDLAGLEEKWAKEISAGRLPLLDKMKVAKPLDFLAPAL 919 Query: 696 KKIKLTNSINKDEWIAYE------------------------WSTHHPENTPLEREETIK 731 + K + + + E E + Sbjct: 920 ARAKQVKRLGEKAVSDLATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVF 979 Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ------------- 778 + ++ + P + S I +E L+D+ Sbjct: 980 KQAEKLYAFSQGGYPYLDASRTTAYQAVSEIKKAFGDPIEDELADSHISELQSANRYLQP 1039 Query: 779 --------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYK 822 + G H +LQ K+ I S Sbjct: 1040 IDTEPDFLFQNTVSSAELGTASHLVLQYYDYAKGD--KDAIDSCIADLVEKGRLSQTLAS 1097 Query: 823 NLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINCPKKDIIISGRIDQ 870 L + E + + + I++ G ID Sbjct: 1098 KLDREALSWFVKSDFAEDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDG 1157 Query: 871 ISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 ++ I +F+YKT H P++ E + + QL +YE+ L +S L L+ Sbjct: 1158 YYEAENGIILFDYKTDHVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVL 1217 Query: 927 VSEPKVFIIP 936 +S ++ + Sbjct: 1218 LSCREIVEVD 1227 >gi|73541802|ref|YP_296322.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha JMP134] gi|72119215|gb|AAZ61478.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha JMP134] Length = 1197 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 173/1007 (17%), Positives = 336/1007 (33%), Gaps = 108/1007 (10%) Query: 4 RFGLSLNESYEL--IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS---- 57 L E + + + L + + ++ + T T A +Q A Sbjct: 224 ALAECLGEDAQGEVLVQALCDEVSLERC---QSLASRLGTAGKTEQTHAGRIQDALIAIG 280 Query: 58 --------QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK------KSPDLKEKLKKS 103 + E+ F+LL + F T + + T + K ++ L + + Sbjct: 281 NWREAGAVSGKPCEQAFALLRTAFFTAAGSARSLRRTSALVKSAGGESQADALLAEHGEL 340 Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 +I R + LA L L Y++ K + +DF DL L+ Sbjct: 341 CAMLEEISARRCEAAVLAVNLALYRLGNALLERYQQYKSEQRAMDFADLEWQAACLMADE 400 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + +++ ++D H+L+DE QDT+ +QW ++ + + G T+F VGD K Sbjct: 401 ETATYLQVRLDARYRHLLLDEFQDTNPLQWRIL----QGWLAGYAGLGERPTVFLVGDPK 456 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F A+ + + Q + + A++L V+ VF Sbjct: 457 QSIYRFRRADARLFGAASTMLQAEFGATVLRTNRTRRN-----RAEVLAWVNAVFDSARA 511 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF---------- 333 T T G V L V ++ S ++ Sbjct: 512 EGRYPLYETQTTAL----PEGGGPVWLLPLVEAEDKGDEALANASESADDATSEVGHRDT 567 Query: 334 ----DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 +S RR+A + ++ T + G++R + D+ +LVR++ Sbjct: 568 LLQPRRQEGDSLRLEEGRRVAAWLRHIHDTVPVHEGGEQRPARWSDMHLLVRRKTHLADY 627 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 R I + R L L DL AL F+++ E DL +LKSPL + Sbjct: 628 ERALRE----AGIPCLSPRRGGLLATLEALDLSALLAFLMTPESDLDLAHVLKSPLVGAT 683 Query: 450 EDDIFKICTQRHETETVYEYIQK-FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 +DD+ + E + + + + +A HD I Sbjct: 684 DDDLIALSQLEGERGWWTRIEASGVPASCSDAVRDGVARLRHWLRLAPHQPVHDLIDQIF 743 Query: 509 GAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564 + R+++ +V+ LD FL +L + Y SL + I EL++ ++ Sbjct: 744 HGGEVRRRYAEAAPPDIREQVLANLDAFLKLSLDLDGGRYPSLPKFIDELQEIRRGDEQE 803 Query: 565 HSANH------------------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 + V I+TVH AKGLE+P V L+D + + Sbjct: 804 SPDEGGMAEDAEPTDEDPSQAGLDAVHILTVHAAKGLEAPFVVLLDANHSDPAPDRGGIL 863 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 + P + R + L + + E LLYV MTRA L++ Sbjct: 864 IDWSPESRVPRHFSAYGKRSERGLARAPLFEAEAALGERENWNLLYVAMTRAQQGLLVSG 923 Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++ + E + + N P Sbjct: 924 VKGRASRNAEAES-----------GSEISGSWYVRLQAAGVGAAVADRPPVEAGNVPAVS 972 Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786 + + ++ + + + + L+ ++T G E ++ + G +I Sbjct: 973 RASEPVRFTDFRLRYRDAADVARFAEDADDLDAPLLETSGD-ETEGIVFNAAAARHGELI 1031 Query: 787 HKLLQVIFTLPEHKRK----NFITSYC------TKNAKLWPAKEYKNLLLSITRLLENPM 836 H LL+ I P+ + + + AK + + + ++ +L Sbjct: 1032 HALLERITRYPDAFDAVPDVETVLRWFPLAGAGSPGAKQAWQAQIEEAVEAVRTMLSAEA 1091 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 + + ++ + ++ RID++ + I +YK +PQE Sbjct: 1092 LFPLLRSADAVSARNEVELYDGRGRLL---RIDRLVEFDDRVVIIDYKL-RLLPQEHA-- 1145 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943 + +QL Y + + K + ++ ++ + + + A Sbjct: 1146 --AYRSQLMRYVVAVTPMFRGKRVDAGVV-TAKGEWIPVEALSVPAA 1189 >gi|157964875|ref|YP_001499699.1| ATP-dependent helicase [Rickettsia massiliae MTU5] gi|157844651|gb|ABV85152.1| ATP-dependent helicase [Rickettsia massiliae MTU5] Length = 822 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 172/621 (27%), Positives = 295/621 (47%), Gaps = 39/621 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +++++++E+ +K P L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGKKRQSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDLYKEENNLLDYDDLIYYTEKLLNNKTTHEWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L +F + ++F VGD+KQSI+SF GA+ + T Sbjct: 357 PPQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLHNFNLVNERLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 NA +KF I L S+RS A+I+ V ++ + + SS G+V Sbjct: 414 NANKKFKNITLKYSYRSCAEIVQFTYNVLKNIKSNYPSLFLANNPL--ISSFCTHQGSVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V S+ ++ W D +S+A +L +I I I + I + R Sbjct: 472 VWPLVTSKKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESKAILPSTANR 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + + K+ V +DR L ++L I DL++L +F+L Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ SE ++++ + E +S + + + Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI I + +FF L++ R+ + ++ D+++E L + + +SLQ Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLREIY----DDDSDDMINELLTLSKNYANDIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ E IKR + +++R+MTVH +KGLE+P+V L D+ + S Sbjct: 690 FVAWFENNDIYIKRDM-EHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDKLIICGF-- 798 Query: 670 TSNEKKSNQRTWYDMVYDSFH 690 SN+ + WYD+ + Sbjct: 799 -SNKSTIPENCWYDIAKQTCD 818 >gi|325125706|gb|ADY85036.1| ATP-dependent exonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1227 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 157/1017 (15%), Positives = 318/1017 (31%), Gaps = 142/1017 (13%) Query: 29 SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88 +D + + + +++ T +R L + T + N + Sbjct: 244 ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302 Query: 89 INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 +++ ++KE K+ + K + A+ + E K Sbjct: 303 FVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASAAAEAELAFIDRFNELK 362 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + + VLDF D+ ++L + ++ + R I++DE QDT+ +Q +I+ L Sbjct: 363 RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + LF VGD KQSIY F AEP + + + + I Sbjct: 422 --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS+ + V+ +F D + + + E V + Sbjct: 471 AENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDIL 377 + + D + I +I T + G+ R + DI Sbjct: 531 SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIA 579 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L R + + + Y + + D + +M+ + I + + D+ Sbjct: 580 ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIA 495 V +L+SP+FNFS D+ +I K ++ + + + +L + Sbjct: 636 VAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695 Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + I + + G + L E + + L + I+ + Sbjct: 696 LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755 Query: 555 EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 + N V++MT+H +KGLE PVVF++ + + I +++ Sbjct: 756 ARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVL 815 Query: 610 PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + P + ++ + L K+ EE RLLYV +TRA +LI+ + Sbjct: 816 DASGLGLSFAYPFDEAEYRADTLANAWLKIAKKQKLLEEEARLLYVALTRAKQKLILVAN 875 Query: 668 SNTS------------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 ++ K + + + + K + Sbjct: 876 IKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747 + + + + P+ + ++ + + P Sbjct: 936 LATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYTFSQGGYPY 995 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780 + S I +E L+D+ + Sbjct: 996 LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055 Query: 781 NRGLIIHKLLQVIFTLPEHKRK---------------NFITSYCTKNAKLW--PAKEYKN 823 G H +LQ K + S + A W + K+ Sbjct: 1056 ELGTASHLVLQYYDYAKGDKDAIDSCIAGLVEKGRLSQTLASMLDREALSWFVKSDFAKD 1115 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 RL T +S + + I++ G ID ++ I +F+Y Sbjct: 1116 FYQQPDRLHREENFATILSPKTLF-----KDFSDFPGKILVHGTIDGYYEAENGIILFDY 1170 Query: 884 KTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 KT H P++ E + + QL +YE+ L +S L L+ +S ++ + Sbjct: 1171 KTDHVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLSVLKKYLVLLSCREIVEVD 1227 >gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052] gi|149901706|gb|ABR32539.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052] Length = 755 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 120/713 (16%), Positives = 253/713 (35%), Gaps = 132/713 (18%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LSSF 72 D+ P ++ NK + I ++A+ + ++ S Sbjct: 48 DIAPYSILAITFTNKAAKEMKDRVKALIGERAENMWISTFHSTCVRILRREIDKIGYKSS 107 Query: 73 FLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF----KSTLA 125 F + QK ++ + +N D+ E+ + + K +DR + + F ++ Sbjct: 108 FTIYDSSDQKTLVKECMKTLNINDKDITEQ--EIMGKIGKAKDRMQSVRSFMLENEANFR 165 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 +A + Y++ K+N LDF+DLI T +L K + + +I++DE Sbjct: 166 EKKIA-DVYEMYQKRLKENNALDFDDLIFKTVELFKNNPG---VLEFYQNKFKYIMVDEY 221 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+E+++ L + + + VGD+ Q IY + GA+ + +L ++ Sbjct: 222 QDTNGAQYELVKLLASKY----------KNICVVGDDDQCIYQWRGADIQNILDFEKDYP 271 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 +I+L ++RS +IL+ + V N + Sbjct: 272 --------GAKVIKLEQNYRSKGNILSAANVVIVNNANRKSKVL---------------- 307 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 + + + + + + +Y DS + ++ I ++ + Sbjct: 308 -----------RTEQEPGNKIKIYRAYADSDEGD--------FVSKQILDIKNKEDK--- 345 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 D +L R + + R + D IKD++A Sbjct: 346 ------NYNDFAILYRTNAQSRIFEESFR----RKGVPYKIVGGTRFYDRKEIKDVLAYL 395 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQK------FANCGI 478 + I++ +DD+S ++ P + + + K+ E +++ + + + + Sbjct: 396 KVIVNPQDDISIRRIINVPKRSIGDATVAKVQEFASSFEFDLWDALAEVRSIPTLTSRNV 455 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 S + + + + +++ IL +Q E I+ L E ++ Sbjct: 456 STIEPFVALMENFMELSETVPVSVLIESILKDTGYLKQLQESNEIEDKSRIENLKELVSD 515 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 E+N+ + L + LE+ + V +MT+H+AKGLE PVVF+V Sbjct: 516 AADFEKNNED--KSLSAYLERVSLVQDTDKIEEEDDAVVLMTIHSAKGLEFPVVFMVGME 573 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + +F K+S EE RL YVG Sbjct: 574 NGIFPGNASF----------------------------------EKESEMEESRRLCYVG 599 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 +TRA L + K+ D + + + + +K ++ +++ Sbjct: 600 ITRAKQTLFMTSAEVRRVFGKTVAYPQSDFINEIKPDLKEYVGVKKESAKSRE 652 >gi|269838114|ref|YP_003320342.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745] gi|269787377|gb|ACZ39520.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745] Length = 1125 Score = 328 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 138/967 (14%), Positives = 287/967 (29%), Gaps = 66/967 (6%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 ++ L ++ V ++ + ++ + + + Q + Sbjct: 186 RSLLPLVHDDVPAPDIHGFLARFEQDVDELEEILARCRNPADHGAQQIRMLMAQRDDLRA 245 Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 + L L QK T ++ ++ K+ E + + + Sbjct: 246 VRNDRDALERAILHLPKISQKGARTSWVDPAD---CDRQKEICRELNEAVEEVKRALRAE 302 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + L LA+ Y E +++ +FEDL+I DLL+ +R + IL Sbjct: 303 AIAGLLPLAEDFVRGYTEQRRRTGRAEFEDLLIWARDLLRD---RPEVRRYFRERFRCIL 359 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTH------SSPRTLFAVGDEKQSIYSFHGAEPK 235 +DE QDT +Q E++ L + G +P LF VGD KQSIY F A+ Sbjct: 360 VDEFQDTDPLQVEILLYLCGEEPDGVAARDWRELRPAPGRLFLVGDPKQSIYRFRRADIS 419 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 KR + + +FRS ++ V+ F + + Sbjct: 420 IYEWVKRHV--------LPGDLCTITQNFRSLGGVIDWVNGCFQHIIAPHDGVQAGYVPL 471 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 W Q + A+ LA + + Sbjct: 472 -------------DPWPQARLDLPRAPVVVVHHEMDGSADDVRRYEATTLAALLRQAVDV 518 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 G+ R + +D+ +L+ R + I Sbjct: 519 EGWPVRDPETGEIRPARWRDVAILIPSRTGIEIYEEALAE----AGIPYRHEGGRSFFQR 574 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 +++L+ R I D LS V L+S F S+++IF ++ Sbjct: 575 QEVRELINCLRAIDDPGDRLSMVAALRSGAFGCSDEEIFLAAEAMGTDFD----YRREPP 630 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFLN 534 + + + EL + + ++ + + G++ L + ++ Sbjct: 631 PEHAAVADGMHTLRELHTLRHRLPLPELVRRVIDETRLIEYALTLPQGDQAAANLLKVVD 690 Query: 535 FTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 L+ + L+ A + VR++T+H AKGLE P+V Sbjct: 691 QARAFAAARGGGLRAFVRWLDTATSRSTEEEDADVAEAGDDVVRLLTIHAAKGLEFPIVA 750 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L + + + + ++ Q + + K+ E +R Sbjct: 751 LANLQGR---DARTRNVIPDHAVRRLHLRVGSQDQGYFETPGYAAAAEIEKQHDAAEQDR 807 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV TRA D LI+ + +K + I+ Sbjct: 808 LLYVAATRARDHLILPVIIWKGSREKERKPKGMLARLAPHLPVPTPDHSPNGADIDGCHV 867 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP----YILNPSTIDTK 765 + T + D + ++ + + + S+++ Sbjct: 868 LLAAHLPVGDNGLRESPPATNVDVDDVLAVRERWLMERAALLKQAGAGLQVTTASSVEAW 927 Query: 766 GKTNL------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + L + G +H ++ + + + ++ + + A Sbjct: 928 DQEPADDAEATPGALPRDAALAVGTALHATMEALDLSDDGEVESMARAKAAEAGVPGHAD 987 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 E L + + + P D + GR+D + + Sbjct: 988 EVAALARACLAS------GVVQRARAAERAAREAAFTLPVGDGFVEGRVDLLFREPDGLV 1041 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 I +YKT P++++ + Q ++Y + + + ++ IP + Sbjct: 1042 IADYKTDRVTPEQVDARLAVYRNQAAVYAFAVAEVTGLPVKEVVFVFARAGVERAIPVDD 1101 Query: 940 LNKAFAE 946 A Sbjct: 1102 GLLALGR 1108 >gi|168213169|ref|ZP_02638794.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str. F4969] gi|170715249|gb|EDT27431.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str. F4969] Length = 751 Score = 328 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 105/576 (18%), Positives = 202/576 (35%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 I + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FIDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L + LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|297583056|ref|YP_003698836.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10] gi|297141513|gb|ADH98270.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10] Length = 773 Score = 328 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 120/673 (17%), Positives = 223/673 (33%), Gaps = 124/673 (18%) Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHY 137 +KNI ++ + + ++ T K F T A +A + Y Sbjct: 153 KEKNIDKKKFDP---------RAILGMISSAKNELKTAKDFDKTAAGYFEQVASTVYEQY 203 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 E K+N LDF+DLI+ T L + + + +I++DE QDT+ Q+ ++R Sbjct: 204 ERELKRNQALDFDDLIMTTIRLFNQ---VPDVLEYYQRRFRYIMVDEYQDTNHAQYRLVR 260 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 L + + L VGD QSIY + GA+ +L ++ + Sbjct: 261 LLAD----------RHKNLCVVGDSDQSIYRWRGADIANILSFEKDYP--------DAKV 302 Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 I L ++RST IL ++V S + + LW Sbjct: 303 ILLEQNYRSTKRILDAANRVISHNSGRKDKN---------------------LW------ 335 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377 + ++ ++ S + + A I I + ++A DI Sbjct: 336 -TNNDGGEKITYYSARNEHDE-------AAFIVDEIQKKLSGSE---------LKASDIA 378 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L R + + L ++ D IKDL+A R + + +DD+SF Sbjct: 379 ILYRTNAQSR----VLEELFVKSNMAYTIVGGTKFYDRKEIKDLLAYLRLVANPDDDISF 434 Query: 438 VCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-----CGISKFQHVIKYIHEL 491 ++ P + K+ ++++ + + + + + Sbjct: 435 RRIVNVPKRGIGPTTVDKLQAYADRNDLSLFQAVAEIEQVGLSARFTNMLRTFHDQLSGW 494 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYSSL 547 I + + + +L R+ + E ++ ++EFL E+ + +L Sbjct: 495 IQMQDYVPVKELVDELLDQTGYREMLENENTLESEGRLENIEEFLTVAGEFEEASDDKTL 554 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 +++L K V +MT+H+AKGLE PVVFL VF H Sbjct: 555 IAFLTDLALIADIDKVDEEEEAEHVLMMTLHSAKGLEFPVVFLAGLEEGVFPHSCSLMEE 614 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 RL YVG+TRA +L + + Sbjct: 615 AEMEEE----------------------------------RRLAYVGITRAEKELYLTRA 640 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 S + K+N + + + + DE + S Sbjct: 641 SMRTIFGKTNMNAPSRFLSEIPDELLAETGLSQGKTSAADELPWMQPSGSSNRPVNRPAP 700 Query: 728 ETIKQLMDEQKIP 740 E +K+ + + Sbjct: 701 ERVKRKTVTKPVT 713 >gi|304436811|ref|ZP_07396777.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370183|gb|EFM23842.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1264 Score = 328 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 146/1004 (14%), Positives = 307/1004 (30%), Gaps = 149/1004 (14%) Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-----------KS 103 Q + ++ + +K+I + I P+L LK + Sbjct: 280 QLLISGAEDQAWERFR-VDAAAAKKQRKSIPHKSIENYDPELGGALKKKITNIYKAWDAA 338 Query: 104 QDEFIKIRDRFNTYKMFKST--LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 D+ + + +T LA + ++ K + +LDF DL LL Sbjct: 339 VDQLPATAEELCAAENRANTAIRQYARLALDFHHAFQNEKLERSLLDFSDLEHRALALLC 398 Query: 162 KRDV----------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211 + I ++ I++DE QDT+ +Q ++R + D Sbjct: 399 RHPEQLQDDLNSVDPTDIAEELRAYYAAIMVDEYQDTNGLQEGILRQIAHDD-------- 450 Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271 F VGD KQSIY F A+P R ++ +I + +FRS A++L Sbjct: 451 ---NRFIVGDVKQSIYRFRLADPSLFQHTYRAYRQ----GSSAGELITMSENFRSRAEVL 503 Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 ++++FS + + R R + + S + S Sbjct: 504 QPINEIFSQIMTESAVEIAYDQSARLNPGRTFDDDPA--GKSLASPLEIDLLDADYSAEE 561 Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391 D + ++ ++ + IA I ++ +G + ++ DI+VL+R K+ +I Sbjct: 562 ADDEGEELAAFAVESHYIARRIKELVDAGYTVQSG--KALRWSDIVVLLRGAKERAVI-- 617 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + I +D + I+ +++L + + D +L SP+ S + Sbjct: 618 -LMDALREAGIPSYADDTAGYFEASEIRMMLSLLAVLDNARQDTPLTAVLTSPMIGMSME 676 Query: 452 DIFKICTQRHETETVYEYI----QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ + ++ +K + ++ I A S + + Sbjct: 677 ELALLRIHTPVGSIYDALKGADAEEVPPAVRNKAKEALQTIRCWRREALLHSVPELLWHL 736 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561 + G L ++ E+ + L + ++ + Sbjct: 737 YRTSGYYDYVGALPDGILRQANLRMLIDRAGDFERTNERGLFRFLRYMDALQRRSTDLSA 796 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 R + + VRIMT+H +KGLE PVVFL + + + + Sbjct: 797 ARTLGESEDVVRIMTIHRSKGLEFPVVFLANIAGAFNTQDISGDVLYHAHAGIGVRVYEN 856 Query: 622 I--PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-- 677 + K + + +++ T E R+LYV MTRA ++LI+ TS S Sbjct: 857 TEIGRQKYDTLGRRSVKEVIRRETIAEEMRILYVAMTRAQEKLILTGTLRTSRSGLSRLA 916 Query: 678 ------------------------QRTWYDMVYDSFHNDERVKKI-KLTNSINKDEWIAY 712 + D + + + + + I EW Sbjct: 917 QLRDFCQQYAREEGETFPDAAILGASCYLDWIALALMRHPDGQALMEGVEGIELREWSDE 976 Query: 713 EWS----------THHPENTPLEREETIKQLMDEQKIPKKLFSPI--------------- 747 + + + + + + + +P Sbjct: 977 KARFAVRIEKADVRTSRSEEERAADAELSAIRSGEPLSPGVRAPYVDSILSWTYDSRGTE 1036 Query: 748 -----------KNDINEPYILNPS--------TIDTKGKTNLESLLSDNQT---FNRGLI 785 K + + PS + + + RG Sbjct: 1037 QIHAKTSVTELKRENFPDEEVLPSFAPAVGAGAGGQEWEVPRFLRTAKRAALSPMERGTA 1096 Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM-S 842 +H L+Q + + + +E L ++ R + + + + Sbjct: 1097 MHALMQHLDFAEVPDIAAIERQARSLFDQGILTEEAYQSLDVRNVWRFVSSALGRRLREA 1156 Query: 843 CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQE 892 Y E+ + I + G ID + + + +YKT H+ Sbjct: 1157 KRVYRELPFGRLLPAKKYYKEAQDEADRIFLQGIIDVLFEEENGDYILLDYKTDRHI--S 1214 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 + + Q+ +Y ++ + + C L + + + Sbjct: 1215 PQDARTRYQFQIDLYCDAVETIL-GRPVKECYLFLLDTGREVRM 1257 >gi|219851287|ref|YP_002465719.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] gi|219545546|gb|ACL15996.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] Length = 1019 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 133/913 (14%), Positives = 295/913 (32%), Gaps = 152/913 (16%) Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-SLTLAK--YLNAHYEEAKKKN 144 + +++L + DE + + ++ ++ L L + YE+ K++ Sbjct: 136 AVIDGISAFRDELI-APDELDDYLTQKQSVQVEEAEQEYLLQLGDLLKVYRAYEQYKRER 194 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 ++DF+D+I L + +R +IL+DE QDT+ Q ++I+ + + Sbjct: 195 NLIDFDDMIHGAVTLFRSDPA---LRSSYRSRFRYILVDEFQDTNYAQLQLIKEIAGE-- 249 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 L VGD+ Q+IY F GA + K+ + L ++ Sbjct: 250 ----------NLCVVGDDDQTIYRFRGAYLTNIRDFKQ--------WAATHTETLLDQNY 291 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 R++ +L++ +V + + + + + Sbjct: 292 RNSGAVLSLALQVMAGAPGRREKALF----------------------------TEKGDG 323 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKR 383 + + + + + A +A I ++GT +G R ++ +D VL R + Sbjct: 324 EPVTVAACGNDAGE-------AEYVAAEIEKLVGTPYHSRQDGGDRPLEYRDFTVLCRTK 376 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD----LSFVC 439 D + + I ++D++A R I + + Sbjct: 377 ADGKKF----QAALQRHAIPCEYQANVDFMQLPVVRDMVAYLRIIDNPLMAAVPLNRVMK 432 Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA---NCGISKFQHVIKYIHELIHIAQ 496 + P + + I + + VYE +Q A V++ + I + Sbjct: 433 ICSIPETVVQKINAAAIKRGDDDDDGVYETMQDAASIVPDHAEPVGEVVRMLAPFIEQKE 492 Query: 497 FCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY----SSLQELI 551 + + ++ A + ++ + V L F L ++ + L + + Sbjct: 493 RYTLPELVHAVMMQASGLYRSALTDTADMVRLYLATFHEIVLEFDRTTPEATIPGLLQYL 552 Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L +P + R + V+I+T H +KG E PVVF+ D + F ++ K +P Sbjct: 553 ELLGAFPVEVVREQKEAGDAVQILTAHKSKGKEFPVVFVADLAREKFPLRYSPKRFRVPG 612 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 K +E RLLYV MTRA ++L + Sbjct: 613 DLARGLRTG----------------DDEKALFVQEERRLLYVAMTRAEERLYLTYAKWYG 656 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731 + K+ + + + + +F + + ++ A + + E + Sbjct: 657 DNKRERKPSPF-LEELNFRENPLITVVEPPACAPALPVTAGDPVEDLRTSLQEEVVRAVS 715 Query: 732 QLM---------------------------------------DEQKIPKKLFSPIKNDIN 752 ++ + +I L P ++ I Sbjct: 716 EMRISTAIQTLVTLEGVREYAEQGTDDFDRDAFLAKAGSRVGADTRITTLLDPPHQSLIP 775 Query: 753 EPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR--K 802 Y + S + T L+ L G +H +++ + P+ + + Sbjct: 776 PNYRFSASALSTYQDCPLQFKFANLYRVPLPRQPQLVFGSTLHSVIEHLTRNPDPSQSLR 835 Query: 803 NFITSYCTKN---AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859 + + + + S + LL+ + + + + V + Sbjct: 836 DQGLALLEEYWSPEPYESKTQESEAHDSASALLDT--YLAWQAGNPNTVIGVEKEFTFSF 893 Query: 860 KDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 I G ID++ + + ++K+ P + QL++Y ++ Y Sbjct: 894 AGHSIHGFIDRLEQTPDGNYVVIDFKSGK-KPDSLTKKAVGEHIQLNLYSMAVQQMYQVL 952 Query: 919 SLVCLLIYVSEPK 931 L Y+ + K Sbjct: 953 PEKAELFYLKDGK 965 >gi|157826193|ref|YP_001493913.1| ATP-dependent helicase [Rickettsia akari str. Hartford] gi|157800151|gb|ABV75405.1| ATP-dependent helicase [Rickettsia akari str. Hartford] Length = 818 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 170/621 (27%), Positives = 296/621 (47%), Gaps = 39/621 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K+++++E+ +K P L +L+K E ++ + K+ T L Sbjct: 237 KEIFFTKDGKKRKSLLSKELRRKYPKLLLELEKIISEIYRLDELHRIEKLEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL W+ +K++ EI HIL+DE QDTS Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNNTTHEWLLHKLENEIKHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L F + F VGD+KQSI+SF G++ K + T Sbjct: 357 PPQWNIITTLITAFNA---ADKPSNSTFIVGDDKQSIFSFQGSDLHNFSLVKEQLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +A +KF I L S+RS A+IL V ++ + + SS G V Sbjct: 414 SANKKFKNITLEFSYRSCAEILQFTHNVLKNIKSNYPSLFLADNPL--ISSCRTHQGLVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V+S+ ++ W D +S+A +L +I I I + I + Sbjct: 472 IWPLVMSEKQ-----EELFWALPEDYEHSKSAADLLIEKIVNFIQEQIESKEILPS-TVS 525 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + ++ K++V +DR + ++L I DLM++ +F+L Sbjct: 526 TISEKDFIILVRKRDE---FSNNLIKELSNAKLNVEISDRINIKENLTIMDLMSVAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ +E ++ + +++ +S + + ++ Sbjct: 583 LPDDDLNLAGLLKSPIIGINEKQLYVLLINKNDNS---------LWDNLSACEAIYAKLN 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI I + + +FF L++ R+ + ++ D+++E L + + +SLQ Sbjct: 634 ALIEIYKISTVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKHYANDIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++ E IKR + +++R+MTVH +KGLE+P+V L D+ + S Sbjct: 690 FVAWFENNDIYIKRDM-EHSDKIRVMTVHGSKGLEAPIVILCDSTTLPVSSNQF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 743 --IWDDKGEMFFSANIVDTPEFLQELKEAAKLQDLQEYIRLLYVAMTRAKDRLIICGF-- 798 Query: 670 TSNEKKSNQRTWYDMVYDSFH 690 SN+ + + WY++V +F Sbjct: 799 -SNKSNTPENCWYEIVKQTFD 818 >gi|224541822|ref|ZP_03682361.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM 15897] gi|224525245|gb|EEF94350.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM 15897] Length = 1181 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 154/867 (17%), Positives = 294/867 (33%), Gaps = 102/867 (11%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L N +Y +AKK LDF DL LL+ + +++ + I++DE QDT Sbjct: 353 LLDQFNKNYSDAKKARNELDFHDLEEYATRLLQPD---LPVVERLNHTLKEIMVDEYQDT 409 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +Q ++ + + +F VGD KQSIY F A+P + K Sbjct: 410 NEMQENLVLKIA--------NYDEHIPMFMVGDMKQSIYRFRQADPSIFQYKFDTFTKLE 461 Query: 249 TNAGQKFS-IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RS +L V+ +F ++ + Sbjct: 462 EMTEYDTNIRIDLKYNYRSEKVVLDSVNYIFDCIMDSSVGGLEYIHGDNAILRYDFDAKG 521 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 L + + + + S + + + + + + A +A I +M K Sbjct: 522 TTL-----PELEKNHDFDTDILISLYKNQEEYTKSEVEAHMVAQKIISM---------KK 567 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + + D VL+R + + Y I L + + +M L + Sbjct: 568 LKDYKYHDFAVLMRATTEFITYKKVFE----RYHIPANITLSSGLFESNEVISMMTLLKA 623 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 +++ DD++ + +L + FS ++ R + +Y + SK H ++ Sbjct: 624 LVNPYDDIAMLSVLHNNFL-FSHFTENELLDIRDADDPLY---INLTHHTNSKVLHFLEV 679 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSS 546 +L + A SP++ L + G + LD L NE Y Sbjct: 680 FDDLRNTAMTSSPYETLKKCLKETGYQAFVSQLMNGEQRSANLDILLETFRTNE--EYPY 737 Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L++ + L+ +++ + V MT+H +KGL+ PVVF+ + S + Sbjct: 738 LKDYLELLDSSSSQAPGFIASDENDAVEFMTIHKSKGLQFPVVFVSAMQKKFNSSDENAE 797 Query: 606 MHIMPSLNDDP------GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + I P K + L +++ T E R+LYV +TRA Sbjct: 798 IIISQHDGVAGSVCKLEESPFGNIVCKYEHPYSKMLKMFIRQETVNEEMRILYVALTRAE 857 Query: 660 DQLIICKHSNTSNE------------------------------KKSNQRTWYDMVYDSF 689 +LI+ E +N +W M Sbjct: 858 KKLILTGTIKDEEEIISIARQVQANDTDPTLKKGQGVVYNLAMRSTNNYLSWVLMALLRH 917 Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER--------EETIKQLMDEQKI-- 739 + + KI + + ++T L R ET++++ KI Sbjct: 918 KDFQEDIKILIPEIRPYLSLDRSSFKELENKDTQLARFHCTILDSSETVQRIPPYAKIKI 977 Query: 740 ---------PKKLFSPIKNDINEPYILNPSTIDTKGKT-NLESLLSDNQTFNRGLIIHKL 789 P + + + + + + + + +RG ++H L Sbjct: 978 ENQYRAYKKYYDFEYPYPVEPRSIAVTSMEEMKSDDTHFDFSNEGTRYLATDRGTLVHNL 1037 Query: 790 LQVIFTLPEHKRKNFITSYC-TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 L F E + I S + KN L I + + D Sbjct: 1038 LSY-FNFKEDDPEELIQSLYTNQMFDEEGLSVLKNYLPHINDFINSDTYQLIKDADQ--- 1093 Query: 849 VSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH-IPYTHIAQLSI 906 + + + +II+G D + I +++ +YKT E + H QLS Sbjct: 1094 IYQEKQFRYKDENGLIINGIFDLVFIKDNKVYVLDYKTDRVSKDNSEEVLKELHRTQLSY 1153 Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVF 933 Y K+LK+ + + + ++ Y+ K Sbjct: 1154 YSKVLKEVF-HTDVQPIVYYLHINKAI 1179 >gi|325686249|gb|EGD28292.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1227 Score = 327 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 151/1014 (14%), Positives = 308/1014 (30%), Gaps = 136/1014 (13%) Query: 29 SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88 +D + + + +++ T +R L + T + N + Sbjct: 244 ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302 Query: 89 INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 +++ ++KE K+ + K + A+ + + E K Sbjct: 303 FVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASAAAEVELAFIDRFNELK 362 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + + VLDF D+ ++L + ++ + R I++DE QDT+ +Q +I+ L Sbjct: 363 RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + LF VGD KQSIY F AEP + + + + I Sbjct: 422 --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS+ + V+ +F D + + + E V + Sbjct: 471 AENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDIL 377 + + D + I +I T + G+ R + DI Sbjct: 531 SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIA 579 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L R + + + Y + + D + +M+ + I + + D+ Sbjct: 580 ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELIHIA 495 V +L+SP+FNFS D+ +I K ++ + + + +L + Sbjct: 636 VAVLRSPIFNFSSSDLAEIRLVNKSVSFYTALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695 Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + I + + G + L E + + L + I+ + Sbjct: 696 LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755 Query: 555 EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 + N V++MT+H +KGLE P+VF++ + + I +++ Sbjct: 756 ARMRKSQKDLAQPILSENADNSVKLMTIHASKGLEFPIVFVLGLEHRYNYQQDITGSYVL 815 Query: 610 PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK- 666 + P + ++ + L K+ EE RLLYV +TRA +LI+ Sbjct: 816 DASGLGLSFAYPFDEAEYRADTLANAWLKIAKKQKLLEEEARLLYVALTRAKQKLILAAN 875 Query: 667 ---------------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 + + + + + + K + + Sbjct: 876 IKLPARTDLAGLEEKWAKEISAGRLPLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935 Query: 712 YEWSTH--------HPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747 P+ + ++ + + P Sbjct: 936 LAAGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYAFSQGGYPY 995 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780 + S I +E L+D+ + Sbjct: 996 LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055 Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLLENPMMT 838 G H +LQ K+ I S L Sbjct: 1056 ELGTASHLVLQYYDYAKGE--KDAIDSCIAGLVEKGRLSQTLASKLDREALSWFVKSDFA 1113 Query: 839 TAM---SCDSYSEVSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + E + + + I++ G ID ++ I +F+YKT Sbjct: 1114 KDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDGYYEAENGIILFDYKTD 1173 Query: 887 HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 H P++ E + + QL +YE+ L +S L L+ +S ++ + Sbjct: 1174 HVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCREIVEVD 1227 >gi|254696352|ref|ZP_05158180.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260760724|ref|ZP_05873067.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260671156|gb|EEX57977.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59] Length = 713 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 170/505 (33%), Positives = 259/505 (51%), Gaps = 19/505 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLA--VPAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDF 503 ++ + K + ++A +F Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEF 713 >gi|241662730|ref|YP_002981090.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240864757|gb|ACS62418.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 1173 Score = 326 bits (836), Expect = 9e-87, Method: Composition-based stats. Identities = 155/958 (16%), Positives = 320/958 (33%), Gaps = 82/958 (8%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 + D+ + + A S + F L + F Sbjct: 247 AALLADMLRVSGLLG---QGAAAEGKRAVAIESAVTAARGMDVSDEAARAQAFEALFAAF 303 Query: 74 LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 TQ + T+ + K D L + + R ++ A Sbjct: 304 HTQAGKARACKPTKALIKAIGDEHAQTLVTLHTTLCETLTAFQARRQEARVRAVNAALFA 363 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L L Y+ K++ +DF DL L+++ D +A+++ ++D H+L+DE QDT Sbjct: 364 LGDALIDRYQAYKRQARAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQDT 423 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +QW ++ + + G + ++F VGD KQSIY F A+ + + + Sbjct: 424 NPMQWRIL----QGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAEF 479 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +++ + R+ +L V+ VF + + + + Sbjct: 480 NA-----TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQSTAVDAPT---GQAL 531 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 L VS+ + + +S R++A + + + I G + Sbjct: 532 LLPLVPVSEAEQADEAAPRDTLTEPREEAGDSQRYAEGRQVAACLRALHANERIREGGVE 591 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R ++ D +LVR+++ R D + + R L L DL AL F+ Sbjct: 592 RAVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDFL 647 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISK--FQHV 484 ++ + DLS +L+SP+F S++ + + T +E + A ++ Sbjct: 648 MTPQADLSLAHVLRSPVFAASDEHLIALAQFGEGAAALTWWERLTALAGHADGSDTLRYA 707 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE 540 + + + +A HD I+ + ++++ R ++V+ LD FL L + Sbjct: 708 HRMLSRWLAVAPTLPVHDLLDYIVYTGELKRRYAERAPAAIRDQVLANLDAFLKLALDLD 767 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANH--------------------NEVRIMTVHTA 580 Y SL + ++EL + + V+I+TVH + Sbjct: 768 GGRYPSLPKFMAELRAIRQGDEDESPDEGMQGDTEAPDTIDAEVASEGLDAVQILTVHAS 827 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE+P V L+D+ + P P ++ R L K Sbjct: 828 KGLEAPFVVLLDSHHSDARVDTAGILIDWPPGAQAPAHFSAFGKTSERGLARELLFKQEN 887 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 + E LLYV MTRA LI+ +N + + + + ++ Sbjct: 888 ALAERENWNLLYVAMTRARQALIVSGVANKRD-------------ATAAQSLDEGDAPEV 934 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 + + +A + E +P+ + Sbjct: 935 DGTASWYTLLASAGVASPAAMLDDVADSVSSAAGHEVVSYHDFRAPLTVTVR-------V 987 Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAK 819 ++ D +G ++H +L+ + K+ + A Sbjct: 988 GAAGAPAEGAADIVFDQGAVAQGELLHAVLERLTRRGLPKQAPDAETIARWFGATGVTQA 1047 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 + ++ R+L + + ++ ++ RID++ + Sbjct: 1048 DATRAADAVRRMLSAEALVHVFDPARFDAAHNEIELFGRDGALL---RIDRLIERGNEVL 1104 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + +YK +P E + QL Y + YP +++ + ++ + + Sbjct: 1105 VVDYKL-RLLPVE----RAAYADQLRGYVAAVTPMYPGRAVRAG-VATAQGEWIDLDA 1156 >gi|171779650|ref|ZP_02920606.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281752|gb|EDT47186.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1208 Score = 326 bits (836), Expect = 9e-87, Method: Composition-based stats. Identities = 156/1018 (15%), Positives = 336/1018 (33%), Gaps = 138/1018 (13%) Query: 9 LNESYELIYKDLWPLPYF--QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 ++ + V+D+ Y G PT + L F Sbjct: 236 PDQEVMDFLACMHETANQLQDVTDLEDYKQ-VTAKGTPTA-NYKKHLNMIEHLHEWAMHF 293 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMF 120 L + ++ P + K Q+ ++ +K Sbjct: 294 ETLYGH----DGLGRLAADVADLIPSGPAVTVAGVKYPVFKTLQERLTGLKHLETIFKYQ 349 Query: 121 KSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 +L L + + Y +AK + +F D+ +L++ IR + Sbjct: 350 SESLPLLELLQAFMQDFSEQYLQAKIQENAFEFSDIAHFAIQILEENPD---IRELYQDK 406 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 + +++DE QD + Q ++ L S+ F VGD KQSIY F A+P+ Sbjct: 407 YHEVMVDEYQDNNHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQI 455 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 ++ + Q+ + +I L +FRS +++L + VF+ L ++S I Sbjct: 456 FNQKFKDFQEHPEH----GKLILLKENFRSQSEVLDATNSVFTH------LMDESVGEIL 505 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 + G+ E + + S +E + +A I + Sbjct: 506 YDGMHQLVAGSPAQKEAHPENKTQVLIYDTDDSSELASSPEEEQINPNEVKLVAKEIIRL 565 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDH 415 + + +DI +LV R Y I V Sbjct: 566 HNEE---------GVAFEDITLLVSSRTR----NDGILQTFEHYGIPLVTDGGEQNYLKS 612 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 + + ++ R + + +D + V +++SP+F+F+EDD+ ++ Q +E ET QK + Sbjct: 613 VEVMVMLDTLRALDNPLNDYALVALMRSPMFSFNEDDLARLALQTNEDETRANLYQKLEH 672 Query: 476 CG--------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520 K + + + A++ S +D I + + Sbjct: 673 ALANQGQHAELVTPALRQKLKVFMTCFSKWRDFAKWHSLYDLIWKIYNERFYYDYVGNLP 732 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMT 576 + L E+ + L I +++ + + V +MT Sbjct: 733 RAEQRQANLYALALRANNFEKTGFKGLSRFIRMIDRVLESENDLADVEVALPKHTVNLMT 792 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQS 625 +H +KGLE VF+++ + + + + + Sbjct: 793 IHKSKGLEFKYVFILNIDKKFSIQDMMSPLILSRQNGAGIKYLADMREELDTDVFPTVKV 852 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN------------- 672 + L+ +T E RL YV MTRA +L + ++ Sbjct: 853 SMDTLPYQLNKRELRLATLSEQMRLFYVAMTRAEKKLYLVGKGSSEKLVDKYSGKSENNH 912 Query: 673 ----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW----STHHPENTPL 724 E+++ M+ K+K + E + + + + Sbjct: 913 LPVAEREAFMTFQDWMLAIHEAYKNLPFKVKFVTDEDLTEEKIGQIEVKSAIKPDDLSNN 972 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------------- 768 + E I + ++ + ++L + ++ IN P + PS + + Sbjct: 973 RQSENIAEALERLEAVEELNAKYQSAINLPSLRTPSQVKKLYEPVMDTDGVDVMAKTDHV 1032 Query: 769 ------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822 S + + G +H+L+Q IF + ++ T+ +A+ + + Sbjct: 1033 KPSFALPDFSKKAKVEATAIGSAMHELMQRIFLSQKVTLEDISTALAQVSAE--DEVKAR 1090 Query: 823 NLLLSITRLLENPMMTTAMSCDS---YSEVSVSGKINCPK--KDIIISGRIDQISISQQN 877 L ++ EN + + ++ Y E + P+ + ++ G +D + + Sbjct: 1091 IRLENVLDFFENSTLGQLIQQNTDKIYREAPFAMLKEDPESKEKFVVRGIVDAYLLLEDR 1150 Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + + +YKT + E I + Q+++Y + L SY + L+ + ++ ++ Sbjct: 1151 LVLLDYKTDKYT--NSEEIKDRYQGQMALYAEALSKSYHIDQVDKYLVLLGGERLEVV 1206 >gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797] gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797] Length = 1171 Score = 326 bits (836), Expect = 9e-87, Method: Composition-based stats. Identities = 142/872 (16%), Positives = 292/872 (33%), Gaps = 93/872 (10%) Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 I +L+E LK + D + +L L +++Y Y+E+K + +LD Sbjct: 294 IRDGFKELRETLKPVYETLSP--DPAGFLAAAEFSLVVLRVSEYAAKCYQESKAEKGLLD 351 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F+DL++ T DL ++ + R + I+++++DE QDT +Q E++R+L + Sbjct: 352 FDDLLLQTRDLFRRDPNA---RQRAAAGIHYLMVDEFQDTDPVQSEIVRALCGKELLTG- 407 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 LF VGD KQSIY F A+P+ + ++ ++ + L +FRS Sbjct: 408 ------KLFLVGDAKQSIYRFRRADPEVFHQLRQEIPEKG--------RLPLSTNFRSQP 453 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 IL + +F+ S +H + + Sbjct: 454 AILNFTNCLFASAMAHYYESLTPFDQQQHSPTP--------------------GIEFLFA 493 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLV 380 D ++ A IA I ++ +T + R ++ DI +L Sbjct: 494 SPDDPDIKLADAIRETEADWIAARIRQLLEDETPRIWSKNPQSGERELRRVEPGDICILF 553 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R L + + + I DL L +++ S +D+LS + + Sbjct: 554 RSLSSVSLYEKALQE----HNLDYYLVGGRAFYAQQEIYDLSNLCQYLDSSDDELSLLGL 609 Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFC 498 L+SP F+ S+D I+ I + K ++ + EL Sbjct: 610 LRSPFFSLSDDTIYAITRHAESLTAAMQVAPPDHVRPEQKRQVRYAQAVLQELRTKKDRL 669 Query: 499 SPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557 S + L L ++ G+ + L + + E + +L++ + + Sbjct: 670 SLVELLNLALERTGYDAALLNEFLGDRKLANLRKLIELARNFEASGLFTLKDFVQRIRDS 729 Query: 558 PPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 + + +R+MT+H +KGLE PVV + D + + K + Sbjct: 730 ILEESKEELAATLPETSDVIRLMTIHQSKGLEFPVVIVADMDRR---SQGASKDPFLHPE 786 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 N + + ++E RLLYV +TRA+D LI+ Sbjct: 787 WGALLNLPAERGVTPENFAFKMHRAIEQNADEDETVRLLYVAVTRAADYLILSAGLPYDR 846 Query: 673 EKKSNQ---RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE- 728 +S + + + + ++ +D+ + P+ ++ Sbjct: 847 RVQSPWMKLLSRHFDLSTGLPTLDPYLGHFTMGNVQQDQIPEIRVHLNRPQTATKPAKKI 906 Query: 729 --------TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---- 776 + F+ N + S ++ E Sbjct: 907 KELKPSQFWAALEQGSPGGYPETFTVFAPQKNRQSHFSVSHLEVADALIQELPEPQYQRL 966 Query: 777 --------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 ++ G + H +++ + L + + ++ K + I Sbjct: 967 STADLLNADEATQLGTLTHSVIERLDPLKPEQSDRIVELVLFDQPQVAGDKLKPLIQQQI 1026 Query: 829 TRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKD---IIISGRIDQISISQQ-NIFIFEY 883 E+ + + + Y E+ ++ + ++G ID + + + +Y Sbjct: 1027 AAWYESEICSALKAARVHYRELEFLLRLPATSDKESAVTVTGMIDAVYQTDDQRWVVLDY 1086 Query: 884 KTH-HHVPQEIEHIPYTHIAQLSIYEKILKDS 914 KT E + + QL +Y ++ Sbjct: 1087 KTGARLAQLADEELISEYEFQLGVYTLAVEQL 1118 >gi|220927829|ref|YP_002504738.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10] gi|219998157|gb|ACL74758.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10] Length = 785 Score = 326 bits (836), Expect = 9e-87, Method: Composition-based stats. Identities = 112/619 (18%), Positives = 213/619 (34%), Gaps = 115/619 (18%) Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 IN+K+ K L+ + ++ D + K++ S +AK + YE+ K N L Sbjct: 128 SINEKNFPPKSVLETIGKQKDELIDAVHYEKLYASDFRMGKIAK-IYKLYEKKLKANNAL 186 Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 DF+D+I+NT L K + + +IL+DE QDT+ Q+ ++R L+E Sbjct: 187 DFDDIIMNTIKLFDKYPE---VLDYYQRRFRYILVDEYQDTNTAQYTLVRKLSE------ 237 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 + L VGD+ QSIY + GA + +L ++ +K I+L ++RST Sbjct: 238 ----AQENLCVVGDDDQSIYGWRGANIRNILDFEKDFKK--------CCTIKLEQNYRST 285 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +IL + V + S + G+ + Sbjct: 286 QNILDAANHVIGNNTGRKCKSL----------WTDNKGGSKIV----------------- 318 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 + + + A A I +I + + KD VL R + Sbjct: 319 --------ICENDNEHEEALYAAREIQRLIFDEDR---------KYKDFAVLYRINAQSR 361 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 ++ + I D IKD++A R + + D++S ++ P Sbjct: 362 VLEEMF----MREGIPYKIVGGQKFYDRKEIKDIIAYMRLVQNPGDNVSLKRVINVPKRG 417 Query: 448 FSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPH 501 + + +++ I K + I++ + + + Sbjct: 418 IGDTTVENAEILAYQGDVSLFTVISNAEEFPSLKRAAQKLGNFSLMINKFRTMKEHMTIS 477 Query: 502 DFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQY 557 +++ +++ E + + E + + E Q+ +SL+E ++ + Sbjct: 478 QMLDMVVEDSGILREYELENTVEAQSRIENIKELKSVAIEFEKQSEDNSLEEFLAHISLV 537 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + + + V +MT+H+AKGLE PVVF+ VF Sbjct: 538 SDID--SLQEDQDYVVLMTMHSAKGLEFPVVFIPGMEEGVFPGYRAITEGP--------- 586 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 EE RL YVG+TRA ++L + + S+ Sbjct: 587 ------------------------EQLEEERRLCYVGITRAREKLYLSNARFRTLFGNSS 622 Query: 678 QRTWYDMVYDSFHNDERVK 696 + + Sbjct: 623 YNRPSRFLAEIPEELVEYP 641 >gi|169347181|ref|ZP_02866123.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str. JGS1495] gi|169296864|gb|EDS78993.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str. JGS1495] Length = 751 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L + LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|300812417|ref|ZP_07092847.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496584|gb|EFK31676.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1227 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 151/1014 (14%), Positives = 307/1014 (30%), Gaps = 136/1014 (13%) Query: 29 SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88 +D + + + +++ T +R L + T + N + Sbjct: 244 ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302 Query: 89 INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 +++ ++KE K+ + K + A+ + + E K Sbjct: 303 FVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASAAAEVELAFIDRFNELK 362 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + + VLDF D+ ++L + ++ + R I++DE QDT+ +Q +I+ L Sbjct: 363 RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + LF VGD KQSIY F AEP + + + + I Sbjct: 422 --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS+ + V+ +F D + + + E V + Sbjct: 471 AENFRSSQPVTQTVNLIFDSLLTKDFGGVDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI---FSNGKKRVIQAKDIL 377 + + D + I +I T G+ R + DI Sbjct: 531 SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFGPKTGQTRPVSYGDIA 579 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L R + + + Y + + D + +M+ + I + + D+ Sbjct: 580 ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIA 495 V +L+SP+FNFS D+ +I K ++ + + + +L + Sbjct: 636 VAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695 Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + I + + G + L E + + L + I+ + Sbjct: 696 LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755 Query: 555 EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 + N V++MT+H +KGLE P+VF++ + + I +++ Sbjct: 756 ARMRKSQKDLAQPILSENADNSVKLMTIHASKGLEFPIVFVLGLEHRYNYQQDITGSYVL 815 Query: 610 PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK- 666 + P + ++ + L K+ EE RLLYV +TRA +LI+ Sbjct: 816 DASGLGLSFAYPFDEAEYRADTLANAWLKIAKKQKLLEEEARLLYVALTRAKQKLILAAN 875 Query: 667 ---------------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 + + + + + + K + + Sbjct: 876 IKLPARTDLAGLEEKWAKEISAGRLPLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935 Query: 712 YEWSTH--------HPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747 P+ + ++ + + P Sbjct: 936 LAAGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYAFSQGGYPY 995 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780 + S I +E L+D+ + Sbjct: 996 LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055 Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLLENPMMT 838 G H +LQ K+ I S L Sbjct: 1056 ELGTASHLVLQYYDYAKGD--KDAIDSCIAGLVEKGRLSQTLASKLDREALSWFVKSDFA 1113 Query: 839 TAM---SCDSYSEVSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + E + + + I++ G ID ++ I +F+YKT Sbjct: 1114 KDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDGYYEAENGIILFDYKTD 1173 Query: 887 HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 H P++ E + + QL +YE+ L +S L L+ +S ++ + Sbjct: 1174 HVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCREIVEVD 1227 >gi|238926789|ref|ZP_04658549.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC 43531] gi|238885321|gb|EEQ48959.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC 43531] Length = 1260 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 146/1004 (14%), Positives = 309/1004 (30%), Gaps = 149/1004 (14%) Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-----------KS 103 Q + ++ + +K+I + I P+L LK + Sbjct: 276 QLLISGAEDQAWERFR-VDAAAAKKQRKSIPHKSIENYDPELGGALKKKITNIYKAWDAA 334 Query: 104 QDEFIKIRDRFNTYKMFKST--LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 D+ + + +T LA + ++ K + +LDF DL LL Sbjct: 335 VDQLPATAEELCAAENRANTAIRQYARLALDFHHAFQNEKLERSLLDFSDLEHRALALLC 394 Query: 162 KRDV----------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211 + I ++ I++DE QDT+ +Q ++R + D Sbjct: 395 RHPEQLQDDLNSVDPTDIAEELRAYYAAIMVDEYQDTNGLQEGILRQIAHDD-------- 446 Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271 F VGD KQSIY F A+P R ++ ++ +I + +FRS A++L Sbjct: 447 ---NRFIVGDVKQSIYRFRLADPSLFQHTYRAYRQDSSA----GELITMSENFRSRAEVL 499 Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 ++++FS + + R R + + S + S Sbjct: 500 QPINEIFSQIMTESAVEIAYDQSARLNPGRTFDDDPA--GKSLASPLEIDLLDADYSAEE 557 Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391 D + ++ ++ + IA I ++ +G + ++ DI+VL+R K+ +I Sbjct: 558 ADDEGEELAAFAVESHYIARRIKELVDAGYTVQSG--KALRWSDIVVLLRGAKERAVI-- 613 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + I +D + I+ +++L + + D +L SP+ S + Sbjct: 614 -LMDALREAGIPSYADDTAGYFEASEIRMMLSLLAVLDNARQDTPLTAVLTSPMIGMSME 672 Query: 452 DIFKICTQRHETETVYEYI----QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ + ++ +K + ++ I A S + + Sbjct: 673 ELALLRIHTPVGSIYDALKGADAEEVPPAVRNKAKEALQTIRCWRREALLHSVPELLWHL 732 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561 + G L ++ E+ + L + ++ + Sbjct: 733 YRTSGYYDYVGALPDGILRQANLRMLIDRAGDFERTNERGLFRFLRYMDALQRRSTDLSA 792 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 R + + VRIMT+H +KGLE PVVFL + + + + Sbjct: 793 ARTLGESEDVVRIMTIHRSKGLEFPVVFLANIAGAFNTQDISGDVLYHAHAGIGVRVYEN 852 Query: 622 I--PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-- 677 + K + + +++ T E R+LYV MTRA ++LI+ TS S Sbjct: 853 TEIGRQKYDTLGRRSVKEVIRRETIAEEMRILYVAMTRAQEKLILTGTLRTSRSGLSRLA 912 Query: 678 ------------------------QRTWYDMVYDSFHNDERVKKI-KLTNSINKDEWIAY 712 + D + + + + + I EW Sbjct: 913 QLRDFCQQYAREEGETFPDAAILGASCYLDWIALALMRHPDGQALMEGVEGIELREWSDE 972 Query: 713 EWS----------THHPENTPLEREETIKQLMDEQKIPKKLFSPI--------------- 747 + + + + + + + +P Sbjct: 973 KARFAVRIEKADVRTSRSEEERAADAELSAIRSGEPLSPGVRAPYVDSILSWTYDSRGTE 1032 Query: 748 -----------KNDINEPYILNPS--------TIDTKGKTNLESLLSDNQT---FNRGLI 785 K + + PS + + + RG Sbjct: 1033 QIHAKTSVTELKRENFPDEEVLPSFAPAVGAGAGGQEWEVPRFLRTAKRAALSPMERGTA 1092 Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM-S 842 +H L+Q + + + +E L ++ R + + + + Sbjct: 1093 MHALMQHLDFAEVPDIAAIERQARSLFDQGILTEEAYQSLDVRNVWRFVSSALGRRLREA 1152 Query: 843 CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQE 892 Y E+ + I + G ID + + + +YKT H+ Sbjct: 1153 KRVYRELPFGRLLPAKKYYKEAQDEADRIFLQGIIDVLFEEENGDYILLDYKTDRHI--S 1210 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935 + + Q+ +Y ++ + + C L + + + Sbjct: 1211 PQDARTRYQFQIDLYCDAVETIL-ERPVKECYLFLLDTGREVRM 1253 >gi|225388061|ref|ZP_03757785.1| hypothetical protein CLOSTASPAR_01795 [Clostridium asparagiforme DSM 15981] gi|225045862|gb|EEG56108.1| hypothetical protein CLOSTASPAR_01795 [Clostridium asparagiforme DSM 15981] Length = 851 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 133/858 (15%), Positives = 273/858 (31%), Gaps = 116/858 (13%) Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++ ++ IL+DE QD++ +Q +I S++ + +F VGD KQS Sbjct: 3 PTAVADELARQFEEILVDEYQDSNNVQETLITSISRE-------RWGKPNVFMVGDVKQS 55 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A P+ + + + IEL +FRS A +L V+ VF Sbjct: 56 IYRFRLARPELFMDKYERYSV----SESLHQKIELHQNFRSRATVLDSVNDVFYKIMTRA 111 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 T G + D+ + ++ D ++ + Sbjct: 112 LGGIRYTEETALHPGAQFAPGERTGTPTELLLVDTGADALKQLDEEAMDY----TAKELE 167 Query: 346 ARRIAYTISNMIGTD-----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR +A I ++ + + R ++ D+++L+R + + + Sbjct: 168 ARMVAIRIRELMDPENGLMVWDKGAEEYRPVRLGDMVILLRSLSGWS---EVFVNVLMNE 224 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--- 457 I + + + ++ +++L + + D+ ++KSP+ + +++++ + Sbjct: 225 GIPAYAQTKTGYFNTVEVETVLSLLAVVDNPMQDIPLAAVMKSPMVSMTDEEMAWMMAAY 284 Query: 458 -----------------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 + + ++ K + + L A++ Sbjct: 285 KRTPEKGQDRGVYGAFMHWKENGGEGVDAPEEAVEAIGEKLACLETLLEGLRRDARYLPV 344 Query: 501 HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-- 557 H A G LD + + E SY L I +E+ Sbjct: 345 HQLLYRAFEAGGYYDYVSAMPAGETRRANLDMLVEKAIAYEATSYKGLFHFIRYIEKLKK 404 Query: 558 ---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + VRIM++H +KGLE PVVFL G + + + L Sbjct: 405 YDTDFGEANVAGEQADTVRIMSIHKSKGLEFPVVFLAGMGKRFNKQDAYGAVLLDADLGL 464 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + K L + ++ + E R+LYV MTRA ++LI+ + K Sbjct: 465 AADYLDLKQRLKMPTLKKQALKRRMELESMGEELRVLYVAMTRAKEKLIMTATDRSLGSK 524 Query: 675 ------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + ++ D + S + K+ + E Sbjct: 525 MEKWAQVPLADGAIPYTILAAAGSFLDWLLMSACDGTIRKRQIPLTGLVGMEIRRQASRQ 584 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKL--FSPIKNDINEPYILNPSTID----------- 763 E +T+ +++ L P D +L+ S + Sbjct: 585 VSREELLTLDTDTVYDPEAARQLADALNYRYPYGGDTGLYAMLSVSELKKQGQVGQDEEE 644 Query: 764 --------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 T G + RG H+ L+ + H R++ Sbjct: 645 IGRGRILGGGEEARILGDVWTDGAGEGGPERAGAVGAARGTAYHRALECLDLGKLHSRED 704 Query: 804 FITSYCTKNAKLWPAKEYKNLLLS--ITRLLENPMMTTAMSCDS----YSEVSVSGKINC 857 + + + +E + L I +L +P+ + E I Sbjct: 705 VRAALKSLLETGYLEREAYDALDEMVIFTMLNSPLGQRMAEAQRDGRLHREQQFIIGIPA 764 Query: 858 PKKD-------IIISGRIDQISISQQNIFIFEYKTHHHVPQEI--EHIPYTHIAQLSIYE 908 + +++ G ID + + + +YKT E + + Q++ Y+ Sbjct: 765 REMGRGDSQELVLVQGVIDAYLEEEDGLVLIDYKTDRVPGGRAGRECLAERYRQQVAYYQ 824 Query: 909 KILKDSYPNKSLVCLLIY 926 + L+ K + +IY Sbjct: 825 RALEQL-TGKKVKENIIY 841 >gi|18311242|ref|NP_563176.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens str. 13] gi|18145925|dbj|BAB81966.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 751 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 200/576 (34%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KNDNG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L + LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|188588674|ref|YP_001919827.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str. Alaska E43] gi|188498955|gb|ACD52091.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str. Alaska E43] Length = 749 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 111/625 (17%), Positives = 221/625 (35%), Gaps = 127/625 (20%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K+I QEI K K+ ++ +Q + F K+ ++ Y+ Sbjct: 132 KDISDQEILSKIGKAKDTMQTAQSFMRQNESNFREKKIAEA-----------YEMYQRRL 180 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 K+N LDF+DLI +L K + + +I++DE QDT+ Q+E+I+ L Sbjct: 181 KENNALDFDDLIFKAVELFKSNPE---VLDFYQNKFKYIMVDEYQDTNGAQYELIKLLAS 237 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + + + VGD+ Q IY + GA+ + +L ++ +I+L Sbjct: 238 KY----------KNICVVGDDDQCIYQWRGADIQNILDFEKDYPN--------AKVIKLE 279 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RS ++IL + V N + + + + Sbjct: 280 QNYRSKSNILNAANVVIVNNANRKSKVL---------------------------RTEQE 312 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + + + ++ DS + ++ I+ + + + KD +L R Sbjct: 313 AGDKIKIYRAFSDSDEGD--------FVSKQIAEIKSKENK---------EYKDFAILYR 355 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + R I D IKD++A + I++ DD+S ++ Sbjct: 356 TNAQSRIFEESLR----RRGIPYKIVGGTRFYDRKEIKDILAYLKAIVNPRDDVSLKRII 411 Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494 P + + + KI +++ + + + + + E + + Sbjct: 412 NVPKRSIGDATVSKIQEFANSFELDMWDALMEVRTIPTLTPRNANNIEVFTNLMEEFMSL 471 Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELI 551 ++ IL +Q + E I+ L E ++ + E+N+ + L Sbjct: 472 SETAPISILIESILKDTGYLKQLEASKEIEDKSRIENLKELVSDAVDFEKNNED--KSLA 529 Query: 552 SELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + LE+ + + +MTVH+AKGLE PVVF+V + +F Sbjct: 530 AYLEKVSLVQDTDKIEEQEDTIVLMTVHSAKGLEFPVVFMVGMENGIFPGNMSF------ 583 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 K+S EE RL YVG+TRA + L + Sbjct: 584 ----------------------------EKESEMEESRRLCYVGITRAKETLFMTSAEVR 615 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERV 695 ++ + D + + + + Sbjct: 616 RVFGRTVAYSQSDFINEIKPDLKEY 640 >gi|251778648|ref|ZP_04821568.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082963|gb|EES48853.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 749 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 111/625 (17%), Positives = 221/625 (35%), Gaps = 127/625 (20%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K+I QEI K K+ ++ +Q + F K+ ++ Y+ Sbjct: 132 KDISDQEILSKIGKAKDTMQTAQSFMRQNESNFREKKIAEA-----------YEMYQRRL 180 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 K+N LDF+DLI +L K + + +I++DE QDT+ Q+E+I+ L Sbjct: 181 KENNALDFDDLIFKAVELFKSNPE---VLDFYQNKFKYIMVDEYQDTNGAQYELIKLLAS 237 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + + + VGD+ Q IY + GA+ + +L ++ +I+L Sbjct: 238 KY----------KNICVVGDDDQCIYQWRGADIQNILDFEKDYPN--------AKVIKLE 279 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RS ++IL + V N + + + + Sbjct: 280 QNYRSKSNILNAANVVIINNANRKSKVL---------------------------RTEQE 312 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + + + ++ DS + ++ I+ + + + KD +L R Sbjct: 313 AGDKIKIYRAFSDSDEGD--------FVSKQIAEIKSKENK---------EYKDFAILYR 355 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + R I D IKD++A + I++ DD+S ++ Sbjct: 356 TNAQSRIFEESLR----RRGIPYKIVGGTRFYDRKEIKDILAYLKAIVNPRDDVSLKRII 411 Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494 P + + + KI +++ + + + + + E + + Sbjct: 412 NVPKRSIGDATVSKIQEFANSFELDMWDALMEVRTIPTLTPRNANNIEVFTNLMEEFMSL 471 Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELI 551 ++ IL +Q + E I+ L E ++ + E+N+ + L Sbjct: 472 SETAPISVLIEAILKDTGYLKQLEASKEIEDKSRIENLKELVSDAVDFEKNNED--KSLA 529 Query: 552 SELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + LE+ + + +MTVH+AKGLE PVVF+V + +F Sbjct: 530 AYLEKVSLVQDTDKIEEQEDTIVLMTVHSAKGLEFPVVFMVGMENGIFPGNMSF------ 583 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 K+S EE RL YVG+TRA + L + Sbjct: 584 ----------------------------EKESEMEESRRLCYVGITRAKETLFMTSAEVR 615 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERV 695 ++ + D + + + + Sbjct: 616 RVFGRTVAYSQSDFINEIKPDLKEY 640 >gi|257440573|ref|ZP_05616328.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii A2-165] gi|257196896|gb|EEU95180.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii A2-165] Length = 1233 Score = 326 bits (834), Expect = 2e-86, Method: Composition-based stats. Identities = 152/1043 (14%), Positives = 297/1043 (28%), Gaps = 148/1043 (14%) Query: 2 KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61 + + + + D + K L T L KA L + Sbjct: 229 RAALADCPGDREQEL-ADAEEKKTPSAREKAKNAVLEKYTDAQERLDKAAALLGRVEQLA 287 Query: 62 IEERFSLLSSFF------------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109 + ++ L L + I ++ + + + Sbjct: 288 VAGEWTPLYDLLTPYVLGMEELPGLKGMKKRLNGEHKKVIRTRADEGAALFAQILELIPC 347 Query: 110 IRDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + + A + +A + K+ +L+F D LL+ +D Sbjct: 348 SEEEAEADRRAAEPRLRALFAAVRDFDARFSAKKRDRKLLEFSDFEHQALHLLRDQDGPP 407 Query: 168 WIRYK-IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 I Q +++DE QDT+ +Q + R L + LF VGD KQSI Sbjct: 408 TALCGVIRQNYAAVMVDEYQDTNALQDALYRCLAS---------PAGDDLFLVGDLKQSI 458 Query: 227 YSFHGAEPKRVLREKRINQKR---------ATNAGQKFSIIELPLSFRSTADILTVVDKV 277 Y F A+P + A +++ L +FRS ++ ++ + Sbjct: 459 YRFRQADPSIFREKLDSWPALPGGAARPRPAEGTPGTDAMLALDANFRSAPQVVEGINFL 518 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 F + + R G + E+ D+ Sbjct: 519 FERLMSPELGDTAYGDGQRLICGAPG-----------------EYTGSVEAHFLPDDTAE 561 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + A IA I ++ + +G R +Q +D +L+ R D P Sbjct: 562 TD------AGWIARRIEELVQSGEPVRDGSATRPVQYEDCCILLAARIDFPAYVEALTA- 614 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I V + R L D I+ L+AL + I + D+ + PLF F++DD+ ++ Sbjct: 615 ---RGIPVYADARENLLDAPHIRPLIALLKVIDNPAQDIYLAAAMLGPLFGFTDDDLVRL 671 Query: 457 CTQRHE----------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 + E + K + + EL +A+ Sbjct: 672 RARAEEIQKQQGENAPQRISLYGALLLTVNSGEDTPFTGKVRAFYARLTELRRMARSVPA 731 Query: 501 HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE--LISELEQY 557 I + + G + F +F S+L + L Sbjct: 732 EQLLEEIFASTGYLAALGVMENGARRREDARRFASFCAGAGSGGISALVRAIDAAALAGS 791 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + V +MT+H +KGL+ PVVF+ DT + + + + + Sbjct: 792 TGQDTVPGGSRPGCVTVMTIHRSKGLQFPVVFVADTARRFNAADTRQPVLLHRMYGAGLR 851 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + + + + L + E RLLYV +TRA D+LI+ Sbjct: 852 LRPEEGEGAYKTAAYTALSNVHAAEMRSEQMRLLYVALTRAQDKLILTVPLGIGKTSNPF 911 Query: 678 ------------------QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY------- 712 ++ D + + ++ + + Sbjct: 912 TRAAAFLEAGAGQTLCRQANSFADWLRAALLVHPNGGPLRRLAEDLELPFADTGSTITLT 971 Query: 713 -------EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 PE + L + + P P ++ + I K Sbjct: 972 VQQALPEGVEPPDPEPEERPLAQADPALTEALRQGFAWQYPAAELARVPAKVSVTGIVHK 1031 Query: 766 G-----KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF--------ITSYCTKN 812 + G +H L+ K Sbjct: 1032 AEQTTLERPGFLAKDGLTAAEMGTALHAFLEHADFAALAAAKQAGTLETAIPAERDRQVE 1091 Query: 813 AKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPK----------- 859 AKL + + L I R +E+ + D E+ + + Sbjct: 1092 AKLTAPEIAEKLDAGRIRRFVESEAFARICAADEVLRELDFITALPAAEVLTAQGTDSAD 1151 Query: 860 ------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913 +++ G D + + ++ + +YKT + + + AQL +Y + Sbjct: 1152 SAAVAQAKVLVQGIADLVLVFPNHLELLDYKTDRR--KSEDDFLAAYRAQLDLYALAISK 1209 Query: 914 SYPNKSLV-CLLIYVSEPKVFII 935 + K + + + K+ + Sbjct: 1210 RFAPKPVTYKGIYSLELGKLIEV 1232 >gi|182625530|ref|ZP_02953301.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str. JGS1721] gi|177909218|gb|EDT71683.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str. JGS1721] Length = 751 Score = 326 bits (834), Expect = 2e-86, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEASFVVSEIEKL---------KSDKG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L + LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|187935645|ref|YP_001884643.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B] gi|187723798|gb|ACD25019.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B] Length = 750 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 113/615 (18%), Positives = 222/615 (36%), Gaps = 127/615 (20%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K+I QEI K K+ ++ +Q I+ F K+ ++ Y+ Sbjct: 132 KDISDQEILSKIGKAKDTMQTAQSFMIQNESNFREKKIAEA-----------YEMYQRRL 180 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 K+N LDF+DLI +L K + + +I++DE QDT+ Q+E+I+ L Sbjct: 181 KENNALDFDDLIFKAVELFKSNPE---VLDFYQNKFKYIMVDEYQDTNGAQYELIKLLAS 237 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + + + VGD+ Q IY + GA+ + +L ++ K +I+L Sbjct: 238 KY----------KNICVVGDDDQCIYQWRGADIQNILDFEKDYPK--------AKVIKLE 279 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RS ++IL + V N + + + + Sbjct: 280 QNYRSKSNILNAANVVIVNNANRKSKVL---------------------------RTEQE 312 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + + + ++ DS + ++ I+ + + + KD +L R Sbjct: 313 AGDKIKIYRAFSDSDEGD--------FVSKQIAEIKSKENK---------EYKDFAILYR 355 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + R I D IKD++A + I++ DD+S ++ Sbjct: 356 TNAQSRIFEESLR----RRGIPYKIIGGTRFYDRKEIKDVLAYLKAIVNPRDDVSLKRII 411 Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494 P + + + KI + +++ + + + + + E + + Sbjct: 412 NVPKRSIGDATVSKIQEFANNFELDMWDALMEVRTIPTLTPRNANNIEAFTNLMEEFMSL 471 Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELI 551 ++ IL + +Q + E I+ L E ++ + E+N+ + L Sbjct: 472 SETAPISVLIEAILKETEYLKQLEASKEIEDKSRIENLKELVSDAVDFEKNNED--KSLA 529 Query: 552 SELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + LE+ + + +MTVH+AKGLE PVVF+V + +F Sbjct: 530 AYLEKVSLVQDTDKIEEQEDTIVLMTVHSAKGLEFPVVFMVGMENGIFPGNMSF------ 583 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 K+S EE RL YVG+TRA + L + Sbjct: 584 ----------------------------EKESEMEESRRLCYVGITRAKETLFMTSAEVR 615 Query: 671 SNEKKSNQRTWYDMV 685 ++ + D + Sbjct: 616 RVFGRTVAYSQSDFI 630 >gi|329117216|ref|ZP_08245933.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD 2020] gi|326907621|gb|EGE54535.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD 2020] Length = 1212 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 148/923 (16%), Positives = 293/923 (31%), Gaps = 130/923 (14%) Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLI 153 + K+ +R + ++ L L K + Y + KK +F D+ Sbjct: 327 QVYKQINASLRNLRHLDTIIQYQAESIPLLILLKNFVVDFSNAYLDRKKIENAFEFSDIA 386 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 LL+ IR + + +++DE QD + +Q ++ L+ Sbjct: 387 HFAIALLETYPE---IRQLYQDKYHEVMVDEYQDNNHMQERLLDLLSS-----------G 432 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 F VGD KQSIY F A+P+ + + Q+ +I L +FRS +++L V Sbjct: 433 HNRFMVGDIKQSIYRFRQADPQIFNSKFKAYQEDPNQ----GKLILLKENFRSQSEVLDV 488 Query: 274 VDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 + +F+ + + D + S++ ++ T + + D NP+ +S + Sbjct: 489 TNAIFTHLMDEEIGDILYDDNHRLIPGSAKQRELKTSNQAQVWIYDTDETSNPEPDSESD 548 Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391 + P + +A I + + + +I +LV R Sbjct: 549 NDNLSPGQVKI------VAKEIIRLHQEE---------AVPFSEITLLVSSRTR----ND 589 Query: 392 LTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 N Y I V + + + ++ R I + +D + V +++SP+FNF E Sbjct: 590 SIFQTFNQYGIPLVADGGQENYLKSVEVMVMLETLRSINNPYNDYALVALMRSPMFNFDE 649 Query: 451 DDIFKICTQRHETETVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQ 496 D + +I Q +T+ + Y +K K + Y+ + +Q Sbjct: 650 DQLARIALQTSQTQKLDSYYEKLKLAKSGQGQQRQLITTELAEKIGKFLSYLSQWRTYSQ 709 Query: 497 FCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 S + I + + L + E+ + L I ++ Sbjct: 710 KQSLYSLIWKIYNDRFYFDFVGTLPKAEQAQANLYALALRAQQFEKTGFKGLTRFIGMID 769 Query: 556 ----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 + + V IMT+H +KGLE VF+++ + M + Sbjct: 770 KILNSQNDLADVDVAKPKDAVSIMTIHKSKGLEFQYVFILNCDKKFALKDIHSPMILSRH 829 Query: 612 LNDDPGIP-----------IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + + L +T E RL YV MTRA Sbjct: 830 RGAGIKFLADLKDKLQANQLASLKVYLETIPYQMNRQELIFATLSEQMRLFYVAMTRAEK 889 Query: 661 QLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 +L + + + + +++ + + I Sbjct: 890 KLYLIGKGSQKKLVDKFDGQKEGNHLPKALRESMQSFQEWILAIQAAFPLKDLHFNLAYI 949 Query: 705 NKDEWIAYE-------WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 + + E S + + I + +D ++L I P + Sbjct: 950 DDSQLTDQEIGHLENKHSLDPDNLQNNRQTDEIARAIDMLDKVQELNQTYHAAITLPTVR 1009 Query: 758 NPSTIDTKGKT----------------------NLESLLSDNQTFNRGLIIHKLLQVIFT 795 PS I + S + G +H+L+Q I Sbjct: 1010 TPSQIKKFYEPIMPSEGIDIISKTPFLPAEIVLPDFSKEKTVLASDIGSAMHELMQRIPI 1069 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS---CDSYSEVSV 851 + K + L L + E+ + + Y E Sbjct: 1070 SDSLSLDDVEE---AKRLIDASEEVKAALNLNMVFDFFEHTELGQMLQRNKERLYREAPF 1126 Query: 852 SG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909 + N + ++ G ID I +F+YKT + + I + + Q+ +Y + Sbjct: 1127 AMLKMDNASHEKFVVRGIIDGFLRFDDRIILFDYKTDKY--KNPLDIGHRYQDQMELYAE 1184 Query: 910 ILKDSYPNKSLVCLLIYVSEPKV 932 L+ +Y + L+ + KV Sbjct: 1185 ALQKAYGIHKIEKHLVLLGGKKV 1207 >gi|251782155|ref|YP_002996457.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390784|dbj|BAH81243.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1210 Score = 325 bits (832), Expect = 3e-86, Method: Composition-based stats. Identities = 155/1011 (15%), Positives = 301/1011 (29%), Gaps = 129/1011 (12%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 + +L+ + + + K + L + F Sbjct: 237 PEQEIQLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPH 296 Query: 69 L--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L + T K + I+ R +L Sbjct: 297 LYGRQGLSQLAKDLTALLPTGNDVTVVGIKYPVFKSLHQKLIRFRHLETILSYQPESLPL 356 Query: 127 LT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L + + Y +AKK+ +F D+ +L++ IR + + +++ Sbjct: 357 LELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPD---IRQTYQDQYHEVMV 413 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q ++ L S+ F VGD KQSIY F A+P+ ++ + Sbjct: 414 DEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 Q +I L +FRS ++L + VF+ + + + + Sbjct: 463 DYQTYPEQ----GKLILLKENFRSQTEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSV 518 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 GQ + +H ++ D + + +A I + Sbjct: 519 GQ-------KIASPEHRAKLLLYNTDHEDQLDIEDADDISPSEVTIVAKEIIRLHNEQH- 570 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421 + +DI +LV R N Y I V + + + + Sbjct: 571 --------VPFEDITLLVSSRT----RNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVM 618 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479 + R I + +D + V +L+SP+F F ED++ ++ Q+ + + K + Sbjct: 619 LDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTG 678 Query: 480 ------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526 K I+ + A+ S +D I + + Sbjct: 679 THPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRFYFDFVGSQAKAEQAQ 738 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 L + EQ+ Y L I LE +++ V +MT+H +KG Sbjct: 739 ANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASSKQAVNLMTIHKSKG 798 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNI 631 LE VFL++ + + + + Sbjct: 799 LEFKYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLP 858 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT--------SNEKKSNQRTWYD 683 + L+ +T E RLLYV MTRA Q+ + ++ ++ Sbjct: 859 YQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEFTDGKRSGNHLPLALR 918 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT---------------PLEREE 728 SF + T + E S PE + Sbjct: 919 ERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQQLLQPDDLKDNRQSA 978 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768 I + +D +L + I+ P + PS + + Sbjct: 979 DITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNAF 1038 Query: 769 --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 S + G +H+L+Q I + A+ L Sbjct: 1039 TLPEFSKQVKVEASQVGSALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALD--LQ 1096 Query: 827 SITRLLENPMMTTAM---SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881 + + + S + Y E + K ++D +I G ID + + +I + Sbjct: 1097 KVEQFFTETALGKRFQTYSTNLYREAPFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELI 1156 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 +YKT + + + + QL +Y + L +Y L+ + ++ Sbjct: 1157 DYKTDRY--RHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMGGSEL 1205 >gi|323127008|gb|ADX24305.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1210 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 155/1011 (15%), Positives = 302/1011 (29%), Gaps = 129/1011 (12%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 + +L+ + + + K + L + F Sbjct: 237 PEQEIQLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPH 296 Query: 69 L--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L + T + K + I+ R +L Sbjct: 297 LYGRQGLSQLAKDLTALLPTGNDVTVAGIKYPVFKSLHQKLIRFRHLETILSYQPESLPL 356 Query: 127 LT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L + + Y +AKK+ +F D+ +L++ IR + + +++ Sbjct: 357 LELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPD---IRQTYQDQYHEVMV 413 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QD + +Q ++ L S+ F VGD KQSIY F A+P+ ++ + Sbjct: 414 DEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 Q +I L +FRS ++L + VF+ + + + + Sbjct: 463 DYQTYPEQ----GKLILLKENFRSQTEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSV 518 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 GQ + +H ++ D + + +A I + Sbjct: 519 GQ-------KIASPEHRAKLLLYNTDHEDQLDIEDADGISPSEVTIVAKEIIRLHNEQH- 570 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421 + +DI +LV R N Y I V + + + + Sbjct: 571 --------VPFEDITLLVSSRTR----NDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVM 618 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479 + R I + +D + V +L+SP+F F ED++ ++ Q+ + + K + Sbjct: 619 LDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTG 678 Query: 480 ------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526 K I+ + A+ S +D I + + Sbjct: 679 THPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRFYFDFVGSQAKAEQAQ 738 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 L + EQ+ Y L I LE +++ V +MT+H +KG Sbjct: 739 ANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASSKQAVNLMTIHKSKG 798 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNI 631 LE VFL++ + + + + Sbjct: 799 LEFKYVFLLNCDKRFAMTDIHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLP 858 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT--------SNEKKSNQRTWYD 683 + L+ +T E RLLYV MTRA Q+ + ++ ++ Sbjct: 859 YQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEFTDGKRSGNHLPLALR 918 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT---------------PLEREE 728 SF + T + E S PE + Sbjct: 919 ERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQQLLQPDDLKDNRQSA 978 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768 I + +D +L + I+ P + PS + + Sbjct: 979 DITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNAF 1038 Query: 769 --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 S + G +H+L+Q I + A+ L Sbjct: 1039 TLPEFSKQVKVEASQVGSALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALD--LQ 1096 Query: 827 SITRLLENPMMTTAM---SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881 + + + S + Y E + K ++D +I G ID + + +I + Sbjct: 1097 KVEQFFTETALGKRFQTYSTNLYREAPFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELI 1156 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 +YKT + + + + QL +Y + L +Y L+ + ++ Sbjct: 1157 DYKTDRY--RHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMGGSEL 1205 >gi|149183792|ref|ZP_01862193.1| PcrA [Bacillus sp. SG-1] gi|148848495|gb|EDL62744.1| PcrA [Bacillus sp. SG-1] Length = 705 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 110/631 (17%), Positives = 210/631 (33%), Gaps = 114/631 (18%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + Y++ +KN LDF+DLI+ T L ++ + ++ +I +DE QDT Sbjct: 136 VISDVYEEYQKRLRKNQALDFDDLIMTTIQLFQR---VPEVLEFYQRKFQYIHVDEYQDT 192 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +++ + F + L VGD QSIY + GA+ +L ++ + Sbjct: 193 NRAQYMLVKMMASRF----------QNLCVVGDSDQSIYRWRGADIANILSFEKDYPR-- 240 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 ++I L ++RST IL + V N + + Sbjct: 241 ------ANVILLEQNYRSTKTILHAANDVIQKNSNRKPKN-------------------- 274 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW ++ ++ + S A+ +A I M + Sbjct: 275 -LW-------TENKQGEKITYY-------RGDSEQSEAQFVAGKIKEMTDSGKR------ 313 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + D +L R + ++ + I D IKD++A R I Sbjct: 314 ---KFSDFAILYRTNAQSRVMEEIL----LKSNIEYSIVGGVKFYDRKEIKDILAYLRLI 366 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-----FANCGISKFQ 482 + +DD+S ++ P + KI ++ + +++ + Sbjct: 367 SNPDDDISLRRVINVPKRGIGSTSLDKIANYAAMNDLSMMQALEEADFIGLSPKITKSVI 426 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 + + ++ S + IL R+ + E + +DEFL+ T Sbjct: 427 EFKDLVKGYTQMQEYLSVTELVEEILEKSGYREMLKAEKSIEAQSRLENIDEFLSVTKSF 486 Query: 540 EQ-NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E N SL +++L K + V +MT+H AKGLE PVVFL+ V Sbjct: 487 EDTNDDKSLVAFLTDLALVADIDKLDDDEQPTDAVILMTLHAAKGLEFPVVFLMGLEEGV 546 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H + + EE RL YVG+TR Sbjct: 547 FPHSRSL----------------------------------MDEEEMEEERRLAYVGITR 572 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A ++L + + ++ + + + + + + + + Sbjct: 573 AEEELYMTNAQMRTLYGQTKMNPVSRFIAEIPEDLIDNFEPEKRSPFSSGGKTTASRTQQ 632 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 P+ R + + K Sbjct: 633 PVRRKPVSRPVPTTTGGEGISWQVGDRAAHK 663 >gi|237666682|ref|ZP_04526667.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657881|gb|EEP55436.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 757 Score = 324 bits (831), Expect = 4e-86, Method: Composition-based stats. Identities = 114/648 (17%), Positives = 234/648 (36%), Gaps = 122/648 (18%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L ++ NI ++I+++ ++ K+ K++D R + + Sbjct: 120 LVKECMKTVNINDKDISEQ--EIISKIGKAKDRMQTARSFKLENESNFRENKI----ADV 173 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y++ K+N LDF+DLI T +L K + ++ +I++DE QDT+ Q+ Sbjct: 174 YEMYQKRLKENNALDFDDLIFKTVELFKSNPET---LEFYQRKFKYIMVDEYQDTNGAQY 230 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E+++ L + + + VGD+ Q IY + GA+ K +L ++ Sbjct: 231 ELVKLLASKY----------KNICVVGDDDQCIYQWRGADIKNILDFEKDYP-------- 272 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 +I+L ++RS +IL + V N + + Sbjct: 273 DAKVIKLEQNYRSKGNILNAANVVIVNNSNRKSKAL------------------------ 308 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + + + + + + +Y DS + + I ++ + + Sbjct: 309 ---RTEQELGSKIKVYRAYSDSDEGD--------FVGKQILDIRKNEDK---------KY 348 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 D +L R + + R I D IKD++A + +++ +D Sbjct: 349 NDFAILYRTNAQSRIFEESFR----RKGIPYKIVGGTRFYDRKEIKDILAYLKVLINPQD 404 Query: 434 DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIK 486 D+S ++ P + + + KI +++ + + +S ++ Sbjct: 405 DISIRRIINVPKRSIGDATVNKIQDFADSFELNMWDALSEVRSIPTLTPRNVSCIDPFVQ 464 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-N 542 + L+ +++ IL Q E I+ L E ++ + E+ + Sbjct: 465 LMENLMILSETTPVSMLIETILEDTGYMDQLKKSNEIEDKSRIENLKELVSDAVDFEKNS 524 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 SL + ++ T K + V +MTVH+AKGLE PVVF+V + +F Sbjct: 525 EDKSLSAYLEKVSLVQDTDKIEDE--DDSVVLMTVHSAKGLEFPVVFMVGMENGIFPGSA 582 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 K+S EE RL YVG+TRA + L Sbjct: 583 SF----------------------------------EKESEMEESRRLCYVGITRAKEIL 608 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 + K+ + D + + + + ++ T +++ +I Sbjct: 609 FMTSAEVRRVFGKTVAYSQSDFINEIKPDLKEYVSVEKTGIKSRESFI 656 >gi|182419338|ref|ZP_02950590.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521] gi|182376669|gb|EDT74241.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521] Length = 757 Score = 324 bits (831), Expect = 4e-86, Method: Composition-based stats. Identities = 114/648 (17%), Positives = 234/648 (36%), Gaps = 122/648 (18%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L ++ NI ++I+++ ++ K+ K++D R + + Sbjct: 120 LVKECMKTVNINDKDISEQ--EIISKIGKAKDRMQTARSFKLENESNFRENKI----ADV 173 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y++ K+N LDF+DLI T +L K + ++ +I++DE QDT+ Q+ Sbjct: 174 YEMYQKRLKENNALDFDDLIFKTVELFKSNPET---LEFYQRKFKYIMVDEYQDTNGAQY 230 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E+++ L + + + VGD+ Q IY + GA+ K +L ++ Sbjct: 231 ELVKLLASKY----------KNICVVGDDDQCIYQWRGADIKNILDFEKDYP-------- 272 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 +I+L ++RS +IL + V N + + Sbjct: 273 DAKVIKLEQNYRSKGNILNAANVVIVNNSNRKSKAL------------------------ 308 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + + + + + + +Y DS + + I ++ + + Sbjct: 309 ---RTEQELGSKIKVYRAYSDSDEGD--------FVGKQILDIRKNEDK---------KY 348 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 D +L R + + R I D IKD++A + +++ +D Sbjct: 349 NDFAILYRTNAQSRIFEESFR----RKGIPYKIVGGTRFYDRKEIKDILAYLKVLINPQD 404 Query: 434 DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIK 486 D+S ++ P + + + KI +++ + + +S ++ Sbjct: 405 DISIRRIINVPKRSIGDATVNKIQDFADSFELNMWDALSEVRSIPTLTPRNVSCIDPFVQ 464 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-N 542 + L+ +++ IL Q E I+ L E ++ + E+ + Sbjct: 465 LMENLMILSETTPVSMLIETILEDTGYMDQLKKSNEIEDKSRIENLKELVSDAVDFEKNS 524 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 SL + ++ T K + V +MTVH+AKGLE PVVF+V + +F Sbjct: 525 EDKSLSAYLEKVSLVQDTDKIEDE--DDSVVLMTVHSAKGLEFPVVFMVGMENGIFPGSA 582 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 K+S EE RL YVG+TRA + L Sbjct: 583 SF----------------------------------EKESEMEESRRLCYVGITRAKEIL 608 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 + K+ + D + + + + ++ T +++ +I Sbjct: 609 FMTSAEVRRVFGKTVAYSQSDFINEIKPDLKEYVSVEKTGIKSRESFI 656 >gi|309782347|ref|ZP_07677073.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA] gi|308918883|gb|EFP64554.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA] Length = 1173 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 161/964 (16%), Positives = 320/964 (33%), Gaps = 90/964 (9%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 + D+ + + + A S + F L + F Sbjct: 247 AALLADMLRVSGWLG---QGGAAEGKRAVAIESAVTAARGMDVSDEAARAQAFEALFAAF 303 Query: 74 LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 TQ + T+ + K D L + + R + A Sbjct: 304 HTQAGKARACKPTKALIKAIGDEHAQTLVTLHTTLCETLTAFQARRQEACVRAVNAALFA 363 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L L Y+ K++ +DF DL L+++ D +A+++ ++D H+L+DE QDT Sbjct: 364 LGDALIDRYQAYKRQARAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQDT 423 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +QW ++ + + G + ++F VGD KQSIY F A+ + + + Sbjct: 424 NPMQWRIL----QGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAEF 479 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +++ + R+ +L V+ VF + + + + Sbjct: 480 NA-----TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQS---TAVDAPMGQAL 531 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 L VS+ + + +S R++A + + + I G + Sbjct: 532 LLPLVPVSEAEQADEAAPRDTLTEPREEAGDSQRYAEGRQVAACLRALHANERIREGGIE 591 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R ++ D +LVR+++ R D + + R L L DL AL F+ Sbjct: 592 RAVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDFL 647 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISK--FQHV 484 ++ + DLS +L+SP+F S++ + + T +E + A + ++ Sbjct: 648 MTPQADLSLAHVLRSPVFAASDEHLIALAQFGEGAAALTWWERLTALAGQADASDTLRYA 707 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE 540 + + + +A+ HD I+ + ++++ R ++V+ LD FL L + Sbjct: 708 HRMLSRWLAVARTLPVHDLLDHIVYTGELKRRYAERAPAANRDQVLANLDAFLKLALDLD 767 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANH--------------------NEVRIMTVHTA 580 Y SL + ++EL + + V+I+TVH + Sbjct: 768 GGRYPSLPKFMAELRAIRQGDEDESPDEGMQGDTEAPDAIDAEVANEGLDAVQILTVHAS 827 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE+P V L+D+ + P P ++ R L K Sbjct: 828 KGLEAPFVVLLDSHHSDARVDTAGILIDWPPGAQAPAHFSAFGKTSERGLAREPLFKQEN 887 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 + E LLYV MTRA LI+ +N + + L Sbjct: 888 ALAERENWNLLYVAMTRARQALIVSGVANKRDATAAQS---------------------L 926 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 + W T + + D +D P + Sbjct: 927 DEGDAPEVDGTASWYTLLASAGVASPAAMLDDVADSVSSAAGHELVSYHDFRAPLTVTVR 986 Query: 761 TIDTKGKTNLESLLSDNQTF-NRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816 + + +Q +G ++H +L+ + + I + A Sbjct: 987 VGAAGAPAEGAADIVFDQGAVAQGELLHAVLERLTRRGLPKQAPDGETIARW--FGATGV 1044 Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876 + ++ R+L + + ++ ++ RID++ Sbjct: 1045 TQADATRAADAVRRMLSAEALAHVFDPARFDAAHNEIELFGRDGALL---RIDRLIERGN 1101 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + + +YK +P E + QL Y + YP +++ V+ + I Sbjct: 1102 EVLVVDYKL-RLLPVE----RAAYADQLRGYVAAVTPMYPGRTVRAG---VATAQGEWID 1153 Query: 937 QNKL 940 L Sbjct: 1154 LEAL 1157 >gi|168205088|ref|ZP_02631093.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str. JGS1987] gi|170663345|gb|EDT16028.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str. JGS1987] Length = 751 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 105/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEASFVVSEIEKL---------KSDKG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L S LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSSYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|164687737|ref|ZP_02211765.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM 16795] gi|164603511|gb|EDQ96976.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM 16795] Length = 746 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 109/572 (19%), Positives = 203/572 (35%), Gaps = 114/572 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + A Y++ K+N LDF+DLI T +L ++ + + +I++DE QDTS Sbjct: 173 ADVYALYQDRLKRNSALDFDDLISKTVELFREHED---VLDFYRNRFRYIMVDEYQDTSR 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E++R L + + + VGD+ QSIY + GA+ + +L +R Sbjct: 230 AQYELVRLLAQ----------GHQNICVVGDDDQSIYGWRGADIRNILEFERDYD----- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + + S +L Sbjct: 275 ---DVHVIKLEQNYRSTQIILDAANYLIKNNIERKRKKLWSEKKEG------------EL 319 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + A +A TIS M+ T Sbjct: 320 IKIQLAETEVD-----------------------EAEFVANTISTMVRTGER-------- 348 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD VL R + N +I + IKD++A R I + Sbjct: 349 -SYKDFAVLYRANAQARPVEDAL----NRAQIPYNIYGGTKFYERKEIKDMVAYLRVIQN 403 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY------EYIQKFANCGISKFQH 483 +DD+S ++ P I KI + + E++Y + + + Sbjct: 404 PQDDISLKRIINVPRRGIGLRTIEKIEDRASLKEESLYSVLIDIDGNSDISRKAKASING 463 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + + + Q ++ + E I+ L EF++ + E Sbjct: 464 FVDIMSTFRSLKQIYPASKMIEKVMDITGYLDELEKDKSEESQDRIENLKEFISVAMEFE 523 Query: 541 QNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + SL+ ++ + + + V +MT+H+AKGLE PVVFL ++F Sbjct: 524 SKNEDTSLEAFLTNVALTSE--PNEEEEHADRVSLMTIHSAKGLEFPVVFLTGMEEKLFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 ++ I ++ + EE RL YVG+TRA Sbjct: 582 --------------------------------IARAIASMQDTQIEEERRLCYVGITRAK 609 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 ++L + + ++N + + + Sbjct: 610 EELFMTMTGKRTLYGRTNHSVASRFIEELPDD 641 >gi|261367235|ref|ZP_05980118.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile DSM 15176] gi|282570836|gb|EFB76371.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile DSM 15176] Length = 1160 Score = 324 bits (830), Expect = 4e-86, Method: Composition-based stats. Identities = 159/970 (16%), Positives = 299/970 (30%), Gaps = 112/970 (11%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77 + + ++ + + + + L Q Q + + L Sbjct: 227 AQALLEAGARTAARDEAADAAYTAVLQDDVSRVEWLCQKLQQGDWDAAVAALEEL----G 282 Query: 78 FTPQKN-------------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 + +K E+ ++ L+ + + + Sbjct: 283 GSWRKAGRIKGGKDSNPVAFAASELRDRAKKQIAALRTDFLLCTAEEYQEDRRRAAPLVA 342 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILID 183 A + + + AK + +LD+ D T DLL D + + + + + +L+D Sbjct: 343 ALVRITQRFADACFAAKCEEKLLDYADFEHLTLDLLIAPDGSRTPLCHTVSERYSAVLVD 402 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ +Q + +L LF VGD KQSIY F A+P L +++ Sbjct: 403 EYQDTNALQDAIYFALAS---------PEADNLFFVGDIKQSIYRFRQADPAVFLGKQQC 453 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS--IPENAQGLSEDSTTTIRHRSSR 301 Q A Q + L +FRS ++ ++ +FS E G++ + Sbjct: 454 WQPYPQPAPQPA-TLALDANFRSAPQVIEGINYLFSVFFSEGLGGVTYGDGQRLVVGKPD 512 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + G ++ + IA I+ M+ Sbjct: 513 VSYPGLCEVDVLDGADAAGDAA------------------------GIAQRIAGMMQEGF 548 Query: 362 IFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + R + D +L+R R D + R + I V + L D I+ Sbjct: 549 AVRDKTGTRPCRYDDFCILLRGRADFSIYEEALRAAE----IPVFADTAADLLDAPHIRP 604 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 AL R I + D+ +L SP+F ++ DD+ + + G + Sbjct: 605 FAALLRVIDNPAQDIPLAAVLLSPMFPYTPDDLVSLRRACPQGS----LYGAVLYGGQPR 660 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539 F + + E +A+ +L + G + L F+ + Sbjct: 661 FAAFTESLAEYRRLARTLPVDRLLEELLARTGYLAAVGALPDGARCREDLLTFVTWAGGA 720 Query: 540 EQNSYSSL-QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + S+L + + S V IMTVH +KGLE PVVF+ +T Q Sbjct: 721 GRAGLSALVRAMDSAAANGGLNQSGGGQTRPGCVSIMTVHRSKGLEFPVVFVANTAHQFN 780 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 I+ + L + + + + L + ++ T E R+LYV +TRA Sbjct: 781 QSDAIRPVLTHSRLGVGVMLRAGKSAKRYKTLPYAALAQAIRTETLSEEMRVLYVALTRA 840 Query: 659 SDQLIICKHSNTSNEKKSNQ-----------------RTWYDMVYDSFHNDERVKKIKLT 701 D LI+ ++ +W + + + Sbjct: 841 QDALIVTIPLKKTDSALKTPALCAAAEATGPEAMQGMSSWAGWLLTAVLLHPESDALWAH 900 Query: 702 NSINKDE--------WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + PE P + L + +P + Sbjct: 901 TPLLPHHLPTKVPLTVRLLPAPEAMPEQPPCLEVQPDVSLRRALEETFAWHNPREKLQKI 960 Query: 754 PYILNPSTIDT-----KGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITS 807 P ++ S + + S RG IH LQ + P + + Sbjct: 961 PAKVSVSAVTHGARPVALERPAFLQKSGMTGAERGTAIHAFLQSVPFDGPAPDLQAEVQR 1020 Query: 808 YCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC-------- 857 K+ +L A + L L + E+ + + E + Sbjct: 1021 --QKDLRLLDADLAEKLDLERVRPFFESGVWRRIRAARRVLREEPFITALPASQVAPEAG 1078 Query: 858 -PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916 ++++ G D + + + I +YKT +E E + AQL +Y Sbjct: 1079 QSDAEVLVQGIADLVLVFDDHAEICDYKTD--ASREPEFYKKEYAAQLQLYRHAFA-LRL 1135 Query: 917 NKSLVCLLIY 926 + L IY Sbjct: 1136 GVPVTKLTIY 1145 >gi|168216776|ref|ZP_02642401.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239] gi|182381218|gb|EDT78697.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239] Length = 751 Score = 324 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNSERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L + LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|255526474|ref|ZP_05393385.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296184847|ref|ZP_06853258.1| putative ATP-dependent DNA helicase PcrA [Clostridium carboxidivorans P7] gi|255509856|gb|EET86185.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296050629|gb|EFG90052.1| putative ATP-dependent DNA helicase PcrA [Clostridium carboxidivorans P7] Length = 754 Score = 324 bits (829), Expect = 6e-86, Method: Composition-based stats. Identities = 108/600 (18%), Positives = 206/600 (34%), Gaps = 117/600 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156 +E + K ++ + K + +A Y++ K N LDF+DLI T Sbjct: 137 REIINKIGEQKDNLISPDRYKKENEGNYRLNKIADA-YMLYQKKLKSNNALDFDDLIYKT 195 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 +L KK + + ++ ++++DE QDT+ Q+E+++ L + R + Sbjct: 196 VELFKKNEE---VLDFYQRKFQYVMVDEYQDTNKSQYELVKLLA----------TKHRNI 242 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD+ Q IY++ GA+ K +L ++ + +I+L ++RS +IL + Sbjct: 243 CVVGDDDQCIYAWRGADIKNILGFEKDYPE--------AKVIKLEQNYRSKGNILKAAND 294 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 V + + +++ + + + +Y D Sbjct: 295 VIKNNAERKRKVL---------------------------RTENEDGERIKIYRAYSDME 327 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 A +A I + K + KD VL R + + Sbjct: 328 E--------ANYVASQIRKI---------TKDNNKKYKDFAVLYRTNAQSRTFEDIF--- 367 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I D IKD++A +F+ + DD+S ++ P + + + K+ Sbjct: 368 -MKSNIPYRIIGGLKFYDRKEIKDILAYLKFVNNPLDDVSLRRIINVPKRSIGDATVKKV 426 Query: 457 CTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 + E E + G + + + I+ I + IL Sbjct: 427 QEFANSMEECMYSVLLDIEQVPSIPTRGTASIKKFVSLINSFIRSKDEIAVSSLIKEILD 486 Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAH 565 ++ + I+ L E ++ + E + SL + ++ Sbjct: 487 TTGYLEELKDSQDIDALSRIENLKELVSAAVEFESTSEDKSLSAFLEKVTLVSDIDNFN- 545 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + + V +MTVH+AKGLE PVVF+V + +F Sbjct: 546 -EDADTVVMMTVHSAKGLEFPVVFMVGMENGIFPGSQSLNDFS----------------- 587 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 EE RL YVG+TRA +QL + ++ + D + Sbjct: 588 -----------------EMEESRRLCYVGITRAKEQLYMTSAEQRRVFGRTVSYSESDFI 630 >gi|126697900|ref|YP_001086797.1| ATP-dependent DNA helicase [Clostridium difficile 630] gi|254973999|ref|ZP_05270471.1| ATP-dependent DNA helicase [Clostridium difficile QCD-66c26] gi|255099501|ref|ZP_05328478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-63q42] gi|255305356|ref|ZP_05349528.1| ATP-dependent DNA helicase [Clostridium difficile ATCC 43255] gi|255313045|ref|ZP_05354628.1| ATP-dependent DNA helicase [Clostridium difficile QCD-76w55] gi|255515802|ref|ZP_05383478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-97b34] gi|255654387|ref|ZP_05399796.1| ATP-dependent DNA helicase [Clostridium difficile QCD-23m63] gi|306519010|ref|ZP_07405357.1| ATP-dependent DNA helicase [Clostridium difficile QCD-32g58] gi|115249337|emb|CAJ67150.1| DNA helicase, UvrD/REP type [Clostridium difficile] Length = 754 Score = 324 bits (829), Expect = 6e-86, Method: Composition-based stats. Identities = 117/563 (20%), Positives = 200/563 (35%), Gaps = 123/563 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + A Y++ K+N LDF+DLI+ T +L K D + +I++DE QDTS Sbjct: 169 ADIYALYQDRLKRNSALDFDDLILKTVELFKANDE---VLAYYRSRFRYIMVDEYQDTSK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+I+ L + + + VGD+ QSIY + GA+ + +L ++ Sbjct: 226 AQYELIKLLARE----------HQNICVVGDDDQSIYGWRGADIRNILEFEKDYDN---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RST IL +KV S + S +L Sbjct: 272 ----VHVVKLEQNYRSTQVILDAANKVISNNIERKRKKLWSEKKEG------------EL 315 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + ++ + + A IA +I+ + + Sbjct: 316 IKIQLTGSEIE-----------------------EADFIADSIAQIARKENR-------- 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD VL R + N +I + IKDL+A R I + Sbjct: 345 -PYKDFAVLYRANAQARPVEDAL----NRSQIPYNIYGGTKFYERKEIKDLLAYLRVIQN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISKFQH 483 +DD+S ++ P I KI + E++Y E + + Sbjct: 400 PQDDISIKRIINVPRRGIGLRTIEKIEDRANLKQESIYSVLIDIETNSDISTKARASISG 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-------------RFGNEVIDVLD 530 + I L I + +L + + + ID L Sbjct: 460 FVDIIGTLRTIKEVYPVSKLIEKVLDTTGYMDELVEIRNKNEKDLTGKGEEAQDRIDNLR 519 Query: 531 EFLNFTLRNEQNSYSSLQ--ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 EF++ L E ++ + + +L + L T + +++ V +MT+HT+KGLE PVV Sbjct: 520 EFISIALEFESSNDDTYENKDLETFLTSIALTSESNDEEDNDRVSLMTIHTSKGLEFPVV 579 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FL +F IK + S EE Sbjct: 580 FLTGMEEGLFPISR--------------------------------AIKSMSDSQIEEER 607 Query: 649 RLLYVGMTRASDQLIICKHSNTS 671 RL YVG+TRA ++L + + Sbjct: 608 RLCYVGITRAKEELYMSLTEKRT 630 >gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 3502] gi|153933103|ref|YP_001385591.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|153936248|ref|YP_001388997.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] gi|168179081|ref|ZP_02613745.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916] gi|148290700|emb|CAL84830.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152929147|gb|ABS34647.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|152932162|gb|ABS37661.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] gi|182670183|gb|EDT82159.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916] Length = 738 Score = 324 bits (829), Expect = 6e-86, Method: Composition-based stats. Identities = 105/575 (18%), Positives = 195/575 (33%), Gaps = 116/575 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K N LDF+DLI T +L K + ++ +I++DE QDT+ Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KDVLEFYQRKFKYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+++ L R + VGD+ Q IY + GA+ +L ++ Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ +I+L ++RS +IL ++V + Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + + + +Y D A+ +A I +I Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSER-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + + + I D IKDLMA + I + Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ +E + + I + I+ + Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + ++ I S IL ++ + + ++ L E ++ E Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + SL + ++ N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YV +TRA Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 +QL I ++ D V + + + Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639 >gi|170758795|ref|YP_001788588.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch Maree] gi|169405784|gb|ACA54195.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch Maree] Length = 738 Score = 324 bits (829), Expect = 6e-86, Method: Composition-based stats. Identities = 105/575 (18%), Positives = 196/575 (34%), Gaps = 116/575 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K N LDF+DLI T +L K + ++ +I++DE QDT+ Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KDVLEFYQRKFKYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+++ L R + VGD+ Q IY + GA+ +L ++ Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ +I+L ++RS +IL ++V + Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + + + +Y D A+ +A I +I + Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDNEK-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + + + I D IKDLMA + I + Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ +E + + I + I+ + Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + ++ I S IL ++ + + ++ L E ++ E Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + SL + ++ N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YV +TRA Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 +QL I ++ D V + + + Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639 >gi|210623345|ref|ZP_03293743.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275] gi|210153655|gb|EEA84661.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275] Length = 755 Score = 323 bits (828), Expect = 8e-86, Method: Composition-based stats. Identities = 125/632 (19%), Positives = 213/632 (33%), Gaps = 134/632 (21%) Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 L L + K + + K+KLK + K+ Sbjct: 110 DAADQVTLIKDCLKELNISDKAFEPKTVISYISGAKDKLKSPKQYKDDCAGDPRMSKI-- 167 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + + Y++ K+N LDF+DLII T +L KK + +I+ Sbjct: 168 ---------ADIYSLYQDRLKRNSALDFDDLIIKTVELFKKNPE---VLDYYRSRFRYIM 215 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDTS+ Q+E I+ L + + VGD+ QSIY + GA+ + +L + Sbjct: 216 VDEYQDTSMAQYEFIKQLA----------MGHKNICVVGDDDQSIYGWRGADIRNILEFE 265 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + +++L ++RST IL + V S + Sbjct: 266 KDYDDVF--------VVKLEQNYRSTQVILDAANHVISNNIERKRKK------------- 304 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW + ++ + L + R IA TI + + + Sbjct: 305 --------LW-------SEKTEGEKIKIELAENELEEG-------RFIAETIIDKVQGEG 342 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 + D VL R I N + + IKDL Sbjct: 343 R---------KYSDCAVLYRANAQARPIEDAL----NRAGVPYNIYGGTKFYERKEIKDL 389 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY------EYIQKFA 474 +A R I + +DD+S ++ P I KI + + E++Y + + + Sbjct: 390 IAYLRIIANPQDDISLKRIINVPRRGIGLRTIEKIEDRASLKQESMYSVLLDIDSNSEIS 449 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF------------- 521 + + + L I + +L + + Sbjct: 450 TKAKKQINGFVDLVGTLRAIKEVYPVSKLIEKVLDSTGYIYELEEEMKKNQNSMNGKYEE 509 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQE--LISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + ID L+EF++ L E + +L++ L + L T + N V +MT+HT Sbjct: 510 AQDRIDNLNEFISIALEFENSDDENLEDKSLETFLTSVALTSEATEDEEPNRVSLMTMHT 569 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 +KGLE PVVF+ +F IK + Sbjct: 570 SKGLEFPVVFITGMEEGLFPISR--------------------------------AIKSM 597 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 K S EE RL YVG+TRA ++L + + Sbjct: 598 KDSDIEEERRLCYVGITRAREELYLTMTEKRT 629 >gi|110803328|ref|YP_699522.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101] gi|110683829|gb|ABG87199.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101] Length = 751 Score = 323 bits (828), Expect = 8e-86, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDVLAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHASEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L + LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|218533282|ref|YP_002424097.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] gi|218525585|gb|ACK86169.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] Length = 1117 Score = 323 bits (828), Expect = 8e-86, Method: Composition-based stats. Identities = 159/938 (16%), Positives = 301/938 (32%), Gaps = 94/938 (10%) Query: 28 VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87 V+ + + G + L T E F + +K Sbjct: 240 VTAFEVMAARLPDAGAVDDSELIAIL-----TAPAEANLCKADGDFAKYRGGKKKWADAA 294 Query: 88 EINKKSPDLKEKLKKSQDEF----IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143 ++ E+L+ + + R + + + Y+ K+ Sbjct: 295 KMVGLPKAEAERLQACAERLHVECCETWARLKANAASELLARLVGAVGAVLERYQARKRA 354 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 +LDF+DLI LL++ ++ +R + + H+L+DE QDT +Q E++ L + Sbjct: 355 GALLDFDDLIAAAAKLLREHEI---VRQALGRRYRHVLVDEFQDTDPLQTEILWRLCGEL 411 Query: 204 FVGKNTHSSPR-----TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 G + R LF VGD KQ+IY F GA+ +R + + ++ Sbjct: 412 PAGATDVWAQRVLRPGALFLVGDPKQAIYRFRGADVSTYVRARNCILAQ-----SPGDVL 466 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 + +FRS IL VD+ F + G + H G V + Sbjct: 467 SISTNFRSCRSILAYVDQRFRNILSGVGQPGFTALDAYH---PDHGRGPCIAALDVPAGA 523 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDIL 377 D ++ + A +A + +IG + R ++A DI Sbjct: 524 DGAKQ-------------DAQALRDVEAEAVADLCARLIGQQLVTCKRDGTRTLRAGDIA 570 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L D I V I DL+AL R + D L+ Sbjct: 571 LLAPSGSDLWRYEEALES----RGIPVSTQAGKGFFRRQEIHDLIALARVLADPRDTLAL 626 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF------ANCGISKFQHVIKYIHEL 491 +L+ P +++++ + E I K A+ + V + + L Sbjct: 627 GALLRGPAIGLTDEELLDLVDGLPRDPEHPESIPKLRLQVDVAHISHPVARPVFERLQVL 686 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQ 548 A +PHD + + A R R+ +D FL + + Sbjct: 687 AKRALGTTPHDILSQAVDALMLRPVVRHRYDGHAERALANIDLFLEMSRPYSVRGLRAFA 746 Query: 549 E-LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + + E ++ + V + T+H +KGLE PVV ++T + Sbjct: 747 GVMKASWEGRTRAVEGRPDSQEAAVSLFTMHASKGLEWPVVIPINT--------STRTKA 798 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + +L D ++ P R + +++ K+ E RL YV TRA + L++ + Sbjct: 799 VTGALIDRTSNCLYCPVFGVRPVGYGEALENEKREVGNERVRLWYVAATRARETLVLPRF 858 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 + + + L A ++ P N Sbjct: 859 VEPGGSTS-------------WSSVVDLGLDDLPAIDIDRLPTAPPPASTEPANAQTREV 905 Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST-IDTKGKTNLESLLSDNQTFNRGLII 786 + ++ P + + PS ++ + + RG++I Sbjct: 906 FAAEADAVARRRRLSWVVPSRGEDAGTIACCPSDMVEEEVDVPPTAAAIPQGGRERGILI 965 Query: 787 HKLLQVI-----FTLPEHKRKNFITSYCTKNAKLWPAKEYK--NLLLSITRLLENPMMTT 839 HKLL+ I + R + K P + S+ R L P + Sbjct: 966 HKLLEEILTGETGEVDLEGRAGVLARQLGLRTKATPDFALDLGEVAASVLRALSVPEIAG 1025 Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNI-FIFEYKTHHHVPQEIEHIP 897 E+ V G + +D +G D I + + ++K+ E + Sbjct: 1026 M-RERLQPELPVFGFESLADEDHATAGVADAIILDGLGRPDVVVDWKSDVDPS---EAVI 1081 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + Q+ Y + LL++ + +V + Sbjct: 1082 ADYRCQVLRYLLATEARL------GLLVFATSGRVVKV 1113 >gi|256544667|ref|ZP_05472039.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] gi|256399556|gb|EEU13161.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] Length = 1139 Score = 323 bits (828), Expect = 8e-86, Method: Composition-based stats. Identities = 156/945 (16%), Positives = 318/945 (33%), Gaps = 131/945 (13%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFL------TQKFTPQKNIITQEINKKSPDLK 97 L + ++ + + + +E + + + P +N + D Sbjct: 250 EKDLSYLEKIKNSIEEKTWDEVIEIFENGLANMVTISKKLDDPNENAYVKAKKNAYKDEF 309 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 +K I F K L Y K++ LDF D+ Sbjct: 310 NIVKDFVKNTDSITRGFFNPLEDKILNELKNLVFSFEKIYTNKKREENYLDFSDMEHEFI 369 Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 LL ++ K+ ++ +I DE QD++ IQ ++ L + LF Sbjct: 370 KLLDNE----KLQSKLKKQFKYIFFDEYQDSNDIQNYIVEKLKNE-----------NNLF 414 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F A P+ L++ + I L +FR+ D++ + + Sbjct: 415 FVGDVKQSIYGFRNARPELFLKKLEGY-----DTDSNCLRINLSKNFRTDKDLIDFNNYI 469 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 F + + P+ + Sbjct: 470 FDRLMTRKNSDIAYKD---------------DNHRLNYHFEFDEKYPKVSIKALAKNVSE 514 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 + + I+N+I + ++ KDI +L+R L + Sbjct: 515 E--------AYLTKEINNLINSG----------LEYKDIAILLRSSSKAYLFENELK--- 553 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 I + I + + ++ + + ++I + DD+S + +L+S +FNFSEDD+ +I Sbjct: 554 -RAGIPFSSDISKISFETVEVEFFINILKYIANPNDDISLLSVLRSEIFNFSEDDLAEIS 612 Query: 458 TQRHETET---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 ++ EY ++ N K + +I F + +DF +I Sbjct: 613 LSSEKSHFYKKFKEYEKENENNLSQKISDFNTIFTDFSYILNFSTMYDFANIIFEKSGFY 672 Query: 515 QQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSA 567 +R G E + ++ F+ ++N+ +SL ++ ++ + R S Sbjct: 673 DFLKARDRGEERVKNIEAFIELMDDYDKNNENSLFGFLAYIDNLKNQKKDNLKASRNLSD 732 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + N VRIMT+H +KGLE V L D + + + K M + L I W + K Sbjct: 733 DENLVRIMTIHKSKGLEFKAVILPDFSKRFNTRDNSKDMVLDKDLGIGINIADWENKIKI 792 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN---------Q 678 + +++ + ++E R+LYV +TRA ++ I + + + Sbjct: 793 SSIKRDLILEKSNLNDKKEEMRVLYVALTRAERKISIIGKKDLNQKGLEKILNANSVLDL 852 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE----------NTPLEREE 728 ++ D + +D+ + + + + + + Sbjct: 853 SSYMDWILKILCDDKIMSDFIDIDYKTDAFNKGFLEIKYIEDFIEDYKKDYTDVEKLIGA 912 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG----------KTNLESLLSDNQ 778 + I + KN N L S + K+ E + + Sbjct: 913 DEYNQKIYKDIEEVFNFSYKNKENINKSLKKSVTEIAKNYDLSKDGYEKSPFEENEAFYE 972 Query: 779 ------------TFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 ++G +IHK+ Q + + + + I + + Sbjct: 973 FRKPNFEEIKLSATDKGTLIHKIFQELEVKSYDLNSLEKEINKLVDL--GKIKKEYLPYI 1030 Query: 825 -LLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881 +I + ++ M S E S KI D ++G+ID + SQ + + Sbjct: 1031 NFENILGFFNSKIIQDLMKKSPKIRKEESFLRKI----DDFYVNGQIDIMFESQNEVVLM 1086 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 ++KT + + QL IY+ ++++ K + + + Sbjct: 1087 DFKTDSIKREGF------YDKQLEIYKDSIEEALGKKVISSYIYW 1125 >gi|116514017|ref|YP_812923.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275213|sp|Q04AN7|ADDA_LACDB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116093332|gb|ABJ58485.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1227 Score = 323 bits (828), Expect = 8e-86, Method: Composition-based stats. Identities = 157/1017 (15%), Positives = 318/1017 (31%), Gaps = 142/1017 (13%) Query: 29 SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88 +D + + + +++ T +R L + T + N + Sbjct: 244 ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302 Query: 89 INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 +++ ++KE K+ K + A+ + + E K Sbjct: 303 FVEEAKEVKEAGKQLVFNVYTSFYASSNADQHALLAKGAEIASAAAEVELAFIDRFNELK 362 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + + VLDF D+ ++L + ++ + R I++DE QDT+ +Q +I+ L Sbjct: 363 RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + LF VGD KQSIY F AEP + + + + I Sbjct: 422 --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 +FRS+ + V+ +F D + + + E V + Sbjct: 471 AENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDIL 377 + + D + I +I T + G+ R + DI Sbjct: 531 SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIA 579 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L R + + + Y + + D + +M+ + I + + D+ Sbjct: 580 ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIA 495 V +L+SP+FNFS D+ +I K ++ + + + +L + Sbjct: 636 VAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695 Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + I + + G + L E + + L + I+ + Sbjct: 696 LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755 Query: 555 EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 + N V++MT+H +KGLE PVVF++ + + I +++ Sbjct: 756 ARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVL 815 Query: 610 PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + P + ++ + L KK EE RLLYV +TRA +LI+ + Sbjct: 816 DASGLGLSFAYPFDEAEYRADTLANAWLKIAKKKKLLEEEARLLYVALTRAKQKLILAAN 875 Query: 668 SNTS------------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 ++ K + + + + K + Sbjct: 876 IKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747 + + + + P+ + ++ + + P Sbjct: 936 LATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYTFSQGGYPY 995 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780 + S I +E L+D+ + Sbjct: 996 LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055 Query: 781 NRGLIIHKLLQVIFTLPEHKRK---------------NFITSYCTKNAKLW--PAKEYKN 823 G H +LQ K + S + A W + K+ Sbjct: 1056 ELGTASHLVLQYYDYAKGDKDAIDSCIAGLVEKGRLSQTLASMLDREALSWFVKSDFAKD 1115 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 RL T +S + + I++ G ID ++ I +F+Y Sbjct: 1116 FYQQPDRLHREENFATILSPKTLF-----KDFSDFPGKILVHGTIDGYYEAENGIILFDY 1170 Query: 884 KTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 KT H P++ + + + QL +YE+ L +S L L+ +S ++ + Sbjct: 1171 KTDHVNPRKQDEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCREIVEVD 1227 >gi|226950697|ref|YP_002805788.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str. Kyoto] gi|226843377|gb|ACO86043.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str. Kyoto] Length = 738 Score = 323 bits (827), Expect = 9e-86, Method: Composition-based stats. Identities = 105/575 (18%), Positives = 195/575 (33%), Gaps = 116/575 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K N LDF+DLI T +L K + ++ +I++DE QDT+ Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KNVLEFYQRKFKYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+++ L R + VGD+ Q IY + GA+ +L ++ Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ +I+L ++RS +IL ++V + Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + + + +Y D A+ +A I +I Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSER-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + + + I D IKDLMA + I + Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ +E + + I + I+ + Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + ++ I S IL ++ + + ++ L E ++ E Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + SL + ++ N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YV +TRA Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 +QL I ++ D V + + + Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639 >gi|260682110|ref|YP_003213395.1| ATP-dependent DNA helicase [Clostridium difficile CD196] gi|260685708|ref|YP_003216841.1| ATP-dependent DNA helicase [Clostridium difficile R20291] gi|296449111|ref|ZP_06890898.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08] gi|296880912|ref|ZP_06904860.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07] gi|260208273|emb|CBA60686.1| ATP-dependent DNA helicase [Clostridium difficile CD196] gi|260211724|emb|CBE02039.1| ATP-dependent DNA helicase [Clostridium difficile R20291] gi|296261930|gb|EFH08738.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08] gi|296428199|gb|EFH14098.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07] Length = 762 Score = 323 bits (827), Expect = 9e-86, Method: Composition-based stats. Identities = 117/563 (20%), Positives = 200/563 (35%), Gaps = 123/563 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + A Y++ K+N LDF+DLI+ T +L K D + +I++DE QDTS Sbjct: 177 ADIYALYQDRLKRNSALDFDDLILKTVELFKANDE---VLAYYRSRFRYIMVDEYQDTSK 233 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+I+ L + + + VGD+ QSIY + GA+ + +L ++ Sbjct: 234 AQYELIKLLARE----------HQNICVVGDDDQSIYGWRGADIRNILEFEKDYDN---- 279 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RST IL +KV S + S +L Sbjct: 280 ----VHVVKLEQNYRSTQVILDAANKVISNNIERKRKKLWSEKKEG------------EL 323 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + ++ + + A IA +I+ + + Sbjct: 324 IKIQLTGSEIE-----------------------EADFIADSIAQIARKENR-------- 352 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD VL R + N +I + IKDL+A R I + Sbjct: 353 -PYKDFAVLYRANAQARPVEDAL----NRSQIPYNIYGGTKFYERKEIKDLLAYLRVIQN 407 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISKFQH 483 +DD+S ++ P I KI + E++Y E + + Sbjct: 408 PQDDISIKRIINVPRRGIGLRTIEKIEDRANLKQESIYSVLIDIETNSDISTKARASISG 467 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-------------RFGNEVIDVLD 530 + I L I + +L + + + ID L Sbjct: 468 FVDIIGTLRTIKEVYPVSKLIEKVLDTTGYMDELVEIRNKNEKDLTGKGEEAQDRIDNLR 527 Query: 531 EFLNFTLRNEQNSYSSLQ--ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 EF++ L E ++ + + +L + L T + +++ V +MT+HT+KGLE PVV Sbjct: 528 EFISIALEFESSNDDTYENKDLETFLTSIALTSESNDEEDNDRVSLMTIHTSKGLEFPVV 587 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FL +F IK + S EE Sbjct: 588 FLTGMEEGLFPISR--------------------------------AIKSMSDSQIEEER 615 Query: 649 RLLYVGMTRASDQLIICKHSNTS 671 RL YVG+TRA ++L + + Sbjct: 616 RLCYVGITRAKEELYMSLTEKRT 638 >gi|168211266|ref|ZP_02636891.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str. ATCC 3626] gi|170710740|gb|EDT22922.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str. ATCC 3626] Length = 751 Score = 323 bits (827), Expect = 9e-86, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDVLAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHASEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L + LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|310826557|ref|YP_003958914.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612] gi|308738291|gb|ADO35951.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612] Length = 734 Score = 323 bits (827), Expect = 9e-86, Method: Composition-based stats. Identities = 110/643 (17%), Positives = 205/643 (31%), Gaps = 128/643 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 Y++ KKN +DF+DLI NT L K I + +IL+DE QDT+ Sbjct: 169 VAQYYRLYQDTLKKNNAMDFDDLIYNTLVLFKGFPE---ILEQYQNRFKYILVDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+E++ L R L GD+ QSIY + GA+ +L ++ Sbjct: 226 HSQYELVNLLAA----------KHRNLCVCGDDDQSIYMWRGADINNILDFEKDYP---- 271 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +++L ++RST+ IL +KV + + + Sbjct: 272 ----DAKVVKLEENYRSTSVILDCANKVIANNTGRKDKN--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + + + + + AR +A I N+ + Sbjct: 307 LWTRNPGEDKIVVSSFNQGYD--------------EARFVAQEIENLRAD---------K 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 D VL R + L + + IKD+++ ++ Sbjct: 344 GYTYGDFAVLYRTNAQSRLFEEAF----MREGMPYQLIGGTGFYSRMEIKDIISYLHVLI 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQ 482 + D++ F+ ++ P + KI E + + ++ +K + Sbjct: 400 NPLDNIGFMRIVNVPKRGIGTATLEKIREFAEFKGWSLMETFYHCEEVPELSSSVRNKVR 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRN 539 + EL + S + ++ + I+ L+E ++ + Sbjct: 460 EFAAVMEELRDRCETDSVSELIDHVIKDTGYLEMLELGKLDHSESRIENLEELISSAVEF 519 Query: 540 EQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ + SL + + T K + +MT+H AKGLE PVVFL +F Sbjct: 520 EKNSDDKSLTAYLETVALTAETDKYDSEEGK--ILLMTLHNAKGLEFPVVFLPGVEEGIF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H EE R+ YVG+TRA Sbjct: 578 PHGRSMDNP----------------------------------EEMEEERRICYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 ++L + + + + + + +L + YE + Sbjct: 604 KERLYMSWAAERTVYGRRQPQMQSRFLK------------ELPPECLELNVQKYERNEIV 651 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761 E + ++ + + + K +P K N S Sbjct: 652 EEASVEKKTYSFSDHLQHKPNVYKSAAPKKAKEESSGAFNLSD 694 >gi|110800092|ref|YP_696932.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC 13124] gi|110674739|gb|ABG83726.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC 13124] Length = 751 Score = 323 bits (827), Expect = 1e-85, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 200/576 (34%), Gaps = 115/576 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K+N LDF+DLI+ T +L +K + + + +I+IDE QDT+ Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E + L + + VGD+ Q IY++ GA+ + +L ++ + Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RS +IL +KV + Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +Y D + A + I + Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KNDNG 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD VL R + R I D IKD++A + I++ Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483 +D +S ++ P + + + K+ +T+Y +Y+ I+ + Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + E++ +++ S +L + I+ L+E ++ + E Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519 Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ + L + LE+ A N V +MTVH++KGLE P VFLV + +F Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + K+ D + + N + Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640 >gi|256112426|ref|ZP_05453347.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] gi|265993864|ref|ZP_06106421.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] gi|262764845|gb|EEZ10766.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] Length = 710 Score = 323 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 169/502 (33%), Positives = 257/502 (51%), Gaps = 19/502 (3%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + + + DLWP+P F + + LS+ G A L++ + Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283 Query: 61 CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + ++ ++L + FL P+ + + + K P+ +E+ + DR + Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + LA+LTL L Y + K++ +LDFEDLI T LL + W++YK+D+ I+ Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDTS QW+VIR L+E+FF G + RTLFAVGDEKQSIYSF GA P Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + R +A+NA KF + L SFRST D+L VD+VF+ PE +GLS H Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + R + G +++W+ + + + + W D L A LA +IA TI + Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R I +DI+VLVRKR + + V G DR LT H+AI Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 +DLMALGRF+L DDLS +LKSPLF + +D +F + R +T++EY+ + A+ Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688 Query: 479 SKFQHVIKYIHELIHIAQFCSP 500 ++ + K + ++A Sbjct: 689 AELAQIHKLLSRWRNMADTMPV 710 >gi|187928127|ref|YP_001898614.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|187725017|gb|ACD26182.1| UvrD/REP helicase [Ralstonia pickettii 12J] Length = 1173 Score = 323 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 155/958 (16%), Positives = 324/958 (33%), Gaps = 82/958 (8%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 + D+ + + + A S F L + F Sbjct: 247 AALLADMLHVSGWLG---QGGAAEGKRAVAIESAVTAARGMDVSDEAARVRAFDALFAAF 303 Query: 74 LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 TQ + T+ + K D L + I+ R ++ + A Sbjct: 304 HTQAGKARACKPTKALIKAVGDEHARTLVTLHTALCEALTTIQARRQEARVRAANAALFA 363 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L L Y+ K++ +DF DL L+++ D +A+++ ++D H+L+DE QDT Sbjct: 364 LGDALIDRYQAYKRQTRAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQDT 423 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +QW ++ + + G + ++F VGD KQSIY F A+ + + + Sbjct: 424 NPMQWRIL----QGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAEF 479 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +++ + R+ +L V+ VF + + + + Sbjct: 480 NA-----TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQS---TAVDAPVGKAL 531 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 L V + + + +S R++A + + ++ I G + Sbjct: 532 LLPLVPVLEAERVDETTPRDTLTEPREEAGDSQRYAEGRQVAACLRALHASERIREGGVE 591 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R ++ D +LVR+++ R D + + R L L DL AL F+ Sbjct: 592 RSVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDFL 647 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--TETVYEYIQKFANCGISK--FQHV 484 ++ + DLS +L+SP+F ++D + + T +E + A + F + Sbjct: 648 MTPQADLSLAHVLRSPVFAATDDHLIALAQFGEGTLALTWWERLTALAGQADASDTFHYA 707 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE 540 + + + +A HD I+ + ++++ R ++V+ LD FL L + Sbjct: 708 HRMLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERAPAANRDQVLANLDAFLKLALDLD 767 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANH--------------------NEVRIMTVHTA 580 Y SL + ++EL + + +I+TVH + Sbjct: 768 GGRYPSLPKFMAELRAIRQGDEDESPDEGMQGDTDAPDAIDAEVASEGLDAAQILTVHAS 827 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE+P V L+D+ + P P ++ R L K Sbjct: 828 KGLEAPFVVLLDSHHSDARVDTAGILIDWPPGAQAPTHFSAFGKTSERGLARDPLFKQEH 887 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 + E LLYV MTRA LI+ +N + + + + ++ Sbjct: 888 DLAERENWNLLYVAMTRARQALIVSGVANKRD-------------AAAAQSVDEGDAPEV 934 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 + + +A + E +P+ + Sbjct: 935 DGTASWYTHLATAGVASPAPMVDGAADSADNAAGPEAVSYHDFRAPLTVTVR-------V 987 Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAK 819 ++ D +G ++H +L+ + ++ + +A Sbjct: 988 GAAGASAEGPADIVFDQGAVAQGELLHAVLERLTRRGLPEQAPDAETIARWFSATGVTQA 1047 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879 + ++ R+ + + ++ P ++ RID++ +I Sbjct: 1048 DATRTADAVRRMFSAETLMHVFDPACFDAAHNEIELFAPDGALL---RIDRLIERGNDIL 1104 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + +YK +P E + QL Y + YP +++ + ++ + + Sbjct: 1105 VVDYKL-RLLPVE----RAAYADQLRGYVAAISPMYPGRNVRAG-VATAQGEWIDLDA 1156 >gi|322807582|emb|CBZ05157.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402 065] Length = 738 Score = 323 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 105/575 (18%), Positives = 195/575 (33%), Gaps = 116/575 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K N LDF+DLI T +L K + ++ +I++DE QDT+ Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KDVLEFYQRKFKYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+++ L R + VGD+ Q IY + GA+ +L ++ Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ +I+L ++RS +IL ++V + Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + + + +Y D A+ +A I +I Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSER-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + + + I D IKDLMA + I + Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ +E + + I + I+ + Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + ++ I S IL ++ + + ++ L E ++ E Sbjct: 461 FVSIMNSFIRKKDEISVSAIIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + SL + ++ N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YV +TRA Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 +QL I ++ D V + + + Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639 >gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str. Langeland] gi|152935296|gb|ABS40794.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str. Langeland] Length = 738 Score = 323 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 105/575 (18%), Positives = 195/575 (33%), Gaps = 116/575 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K N LDF+DLI T +L K + ++ +I++DE QDT+ Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KDVLEFYQRKFKYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+++ L R + VGD+ Q IY + GA+ +L ++ Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ +I+L ++RS +IL ++V + Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + + + +Y D A+ +A I +I Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSER-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + + + I D IKDLMA + I + Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ +E + + I + I+ + Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + ++ I S IL ++ + + ++ L E ++ E Sbjct: 461 FVSIMNSFIRKKDEISVSAIIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + SL + ++ N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YV +TRA Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 +QL I ++ D V + + + Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639 >gi|237733547|ref|ZP_04564028.1| ATP-dependent deoxyribonuclease subunit A [Mollicutes bacterium D7] gi|229383380|gb|EEO33471.1| ATP-dependent deoxyribonuclease subunit A [Coprobacillus sp. D7] Length = 1233 Score = 323 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 157/953 (16%), Positives = 316/953 (33%), Gaps = 114/953 (11%) Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAK 131 + K + N ++K + + + + +T K Sbjct: 305 LFNEDNELYKKEYNRLKNNIIKFYRDKFNDIV--YDDFDEFKLTLSTSLEPLEKLITYLK 362 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 Y++ K + +LDF DL N +LL+ + + Y Q++ I+IDE QDT+ I Sbjct: 363 QFKQAYQDYKLAHNLLDFNDLEANALELLEPKYGIVTLLY---QQLKEIMIDEYQDTNQI 419 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q +I + + H F VGD KQSIY F A+P+ + N Sbjct: 420 QETLINKIAD-------LHEPKINRFMVGDMKQSIYRFREADPEIFNEKYLTF-----NL 467 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENA----QGLSEDSTTTIRHRSSRIGQVGT 307 K I+L ++RS +L V+ +F+ + D + + + R Sbjct: 468 LPKTKRIDLKFNYRSNKIVLDSVNYIFNQIMDKDIGGLDYYLDESAKLNYDFLRKEGAKE 527 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIGT-DTIF 363 ++ +V ++ + + + + S + A + A+ +A I +MIG + Sbjct: 528 LEDLPEVTAKASQRLDEEARFTSEVILSYQTGTISNDAELEAKIVAKKIQDMIGHLELDN 587 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 NG KR+ KDI+VL+R + + N + I I +L+ Sbjct: 588 FNGTKRLADYKDIVVLMRSTRSFIAFKKIF----NKFNIPSHIVLSQGFLQAPEIINLVN 643 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN---CGISK 480 + + ++ DD++F +LK + F + ET ++++ + Sbjct: 644 VLKAFNNRLDDIAFTSLLKGNYVISHFSENFLAQIKIDETISMFDNCINYLEKKLDNYEA 703 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRN 539 + I Y ++ + S + L S G + + ++ + Sbjct: 704 LETFINYYQDMRNYFNSHSIKESLMKFLEDSNYLPFLASLVNGPQRVANIELMIQKLDEM 763 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 +S +++ ++ + A + + N V MT+H +KGLE P+VF+ + ++ Sbjct: 764 HDDSLNTITTKFDDMINNGVNLSPAMVSSNDDNVVSFMTIHKSKGLEFPIVFVSNMQNKF 823 Query: 598 FSHKHIKKMHIMPSLNDD-------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +++ L P + N + E R+ Sbjct: 824 NQQDARERIISDKKLGIAIRPRVKCDLEPYQDVIVEYENKYRKVIATAQTSEAINEEMRI 883 Query: 651 LYVGMTRA------------------------------------SDQLIICKHSNTSN-- 672 YV +TRA D++I+ ++ N Sbjct: 884 FYVALTRASQKLIMTGLIKEPQDLIKWQKYVINNSEDSMINPRCKDKVILYHNARKQNSY 943 Query: 673 -------------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 +K+ D + + + + I + ++ + Sbjct: 944 LDWLGISLMSHSNIINQGLKKELLDHDQTDDLVNEIKQNFQTILIHQNKHLIQENTKHSK 1003 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--- 770 +S + +E + + D + P L S T+ + Sbjct: 1004 FSIKILSHHDVEEQIIVSNKSDTILDLSSYHRYSNFEYPYPTNLEKSIAVTRKIEDGDRS 1063 Query: 771 ------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY-KN 823 E S RG IIH +L+ + + + N A + Sbjct: 1064 FKDISYELDDSPVDAGTRGTIIHSVLEHLDIDVHLDLSDNLNKLKQANLYDNEAWQLIDK 1123 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 + + +P+ ++ D + + + II G D + I I I +Y Sbjct: 1124 YQQHLENFITSPVYQLMVNADYL---YREKEFSMLENGQIIHGIFDVVCIKDNQITIIDY 1180 Query: 884 KTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 KT + + + H Q+ Y+KIL +P ++ ++ Y+ K I Sbjct: 1181 KTDNLNKNTSKEILISLHKPQMDYYKKILARVFPQANIQAIVYYLYINKYVTI 1233 >gi|167754673|ref|ZP_02426800.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402] gi|167705505|gb|EDS20084.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402] Length = 1233 Score = 323 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 157/953 (16%), Positives = 316/953 (33%), Gaps = 114/953 (11%) Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAK 131 + K + N ++K + + + + +T K Sbjct: 305 LFNEDNELYKKEYNRLKNNIIKFYRDKFNDIV--YDDFDEFKLTLSTSLEPLEKLITYLK 362 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 Y++ K + +LDF DL N +LL+ + + Y Q++ I+IDE QDT+ I Sbjct: 363 QFKQAYQDYKLAHNLLDFNDLEANALELLEPKYGIVTLLY---QQLKEIMIDEYQDTNQI 419 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q +I + + H F VGD KQSIY F A+P+ + N Sbjct: 420 QETLINKIAD-------LHEPKINRFMVGDMKQSIYRFREADPEIFNEKYLTF-----NL 467 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENA----QGLSEDSTTTIRHRSSRIGQVGT 307 K I+L ++RS +L V+ +F+ + D + + + R Sbjct: 468 LPKTKRIDLKFNYRSNKIVLDSVNYIFNQIMDKDIGGLDYYLDESAKLNYDFLRKEGAKE 527 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIGT-DTIF 363 ++ +V ++ + + + + S + A + A+ +A I +MIG + Sbjct: 528 LEDLPEVTAKASQRLDEEARFTSEVILSYQTGTISNDAELEAKIVAKKIQDMIGHLELDN 587 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 NG KR+ KDI+VL+R + + N + I I +L+ Sbjct: 588 FNGTKRLADYKDIVVLMRSTRSFIAFKKIF----NKFNIPSHIVLSQGFLQAPEIINLVN 643 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN---CGISK 480 + + ++ DD++F +LK + F + ET ++++ + Sbjct: 644 VLKAFNNRLDDIAFTSLLKGNYVISHFSENFLAQIKIDETISMFDNCINYLEKKLDNYEA 703 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRN 539 + I Y ++ + S + L S G + + ++ + Sbjct: 704 LETFINYYQDMRNYFNSHSIKESLMKFLEDSNYLPFLASLVNGPQRVANIELMIQKLDEM 763 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 +S +++ ++ + A + + N V MT+H +KGLE P+VF+ + ++ Sbjct: 764 HDDSLNTITTKFDDMINNGVNLSPAMVSSNDDNVVSFMTIHKSKGLEFPIVFVSNMQNKF 823 Query: 598 FSHKHIKKMHIMPSLNDD-------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +++ L P + N + E R+ Sbjct: 824 NQQDARERIISDKKLGIAIKPRVKCDLEPYQDVIVEYENKYRKVIATAQTSEAINEEMRI 883 Query: 651 LYVGMTRA------------------------------------SDQLIICKHSNTSN-- 672 YV +TRA D++I+ ++ N Sbjct: 884 FYVALTRASQKLIMTGLIKEPQDLIKWQKYVINNSEDSMINPRCKDKVILYHNARKQNSY 943 Query: 673 -------------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 +K+ D + + + + I + ++ + Sbjct: 944 LDWLGISLMSHSNIINQGLKKELLDHDQTDDLVNEIKQNFQTILIHQNKHLIQENTKHSK 1003 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--- 770 +S + +E + + D + P L S T+ + Sbjct: 1004 FSIKILSHHDVEEQIIVSNKSDTILDLSSYHRYSNFEYPYPTNLEKSIAVTRKIEDGDRS 1063 Query: 771 ------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY-KN 823 E S RG IIH +L+ + + + N A + Sbjct: 1064 FKDISYELDDSPVDAGTRGTIIHSVLEHLDIDVHLDLSDNLNKLKQANLYDNEAWQLIDK 1123 Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 + + +P+ ++ D + + + II G D + I I I +Y Sbjct: 1124 YQQHLENFITSPVYQLMVNADYL---YREKEFSMLENGQIIHGIFDVVCIKDNQITIIDY 1180 Query: 884 KTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 KT + + + H Q+ Y+KIL +P ++ ++ Y+ K I Sbjct: 1181 KTDNLNKNTSKEILISLHKPQMDYYKKILARVFPQANIQAIVYYLYINKYVTI 1233 >gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|293367781|ref|ZP_06614430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W2(grey)] gi|38604841|sp|Q8CRT9|PCRA_STAES RecName: Full=ATP-dependent DNA helicase pcrA gi|27316055|gb|AAO05189.1|AE016749_135 ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|291318120|gb|EFE58517.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W2(grey)] gi|329726871|gb|EGG63329.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU144] gi|329734740|gb|EGG71046.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU045] Length = 729 Score = 323 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 120/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + + + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEHLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKSENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST +IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKHNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 307 ---------------------LW-------TANSGGDKIQYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + ++ +L R + ++ I Sbjct: 332 VVKEIMKHQRSGK----------KYSEMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + I LI +F + +L R Sbjct: 438 DALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKSGYRDMLDREQS 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQNGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 EE R+ YV +TRA + L I + +S + + + Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLD 640 >gi|223044036|ref|ZP_03614076.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14] gi|222442579|gb|EEE48684.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14] Length = 731 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 119/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLLVEKDVSPYNILAITFTNKAAKEMKERVEQLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + Y+ +N LDF+DLI+ T +L ++ + Sbjct: 148 KNELKTPDDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPDA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST +IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 307 ---------------------LW-------TANTGGDKIQYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D+ +L R + ++ I Sbjct: 332 VVKEIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYAVQSNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F + +L R Sbjct: 438 DALGEVDFIGLSKKVTQECINFYETITHLIKEQEFLEISEIVEEVLKKSGYRDMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQSGVTMMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 EE R+ YV +TRA + L + + +S + + Sbjct: 586 DDHEMEEERRICYVAITRAEELLYVTNTTTRMLFGRSQSNMPSRFLKEIPEELLE 640 >gi|257066035|ref|YP_003152291.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] gi|256797915|gb|ACV28570.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] Length = 1121 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 149/891 (16%), Positives = 306/891 (34%), Gaps = 120/891 (13%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 ++ + + + K + K L K Y K++ Sbjct: 289 KDTRDLYKEDIKNVAKFVTNTDSLTMELFAKKEEDLLSEINVLVKDFMKVYRRLKEEKAY 348 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 LDF D+ DL+ + R K+ + +I DE QD++ IQ +I L + Sbjct: 349 LDFSDMEHKFIDLIDIEEA----RNKLRETYKYIFFDEYQDSNEIQNYIIEKLKGED--- 401 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 LF VGD KQSIY F AEPK L + K K I+L +FRS Sbjct: 402 --------NLFFVGDVKQSIYGFRRAEPKLFLEKLEAYDKD-----DKSVRIDLNKNFRS 448 Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 D+L + +F ++ +S + + Sbjct: 449 QKDVLDFDNFIFDRLM---------------------------------TKEESDIDYRD 475 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386 F+ Q + + I I + + +DI +L+R + Sbjct: 476 GGHRLNFNKNEQSAYERANIKVIDSKIREEDYLAKLIEEIRAMGYDYRDIAILLRSGGKS 535 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 + + +I + + + + + L +++ + +DDL+ + +L+S +F Sbjct: 536 YVYEEAFK----KAEIPFFNDISKVSFRAVEVTFFINLLKYLANPKDDLTLLSLLRSEIF 591 Query: 447 NFSEDDIFKICTQRHETETVYEYI-QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 +F EDD+ +I + + K +L ++ S ++F Sbjct: 592 DFDEDDLVEIRLSSDSYSFTKAFDEYDKDEEIVEKINDFKTIFADLTYVKNLLSLYEFAN 651 Query: 506 LILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYP 558 + + ++R + I+ ++ F++ ++ + + L + ++ Sbjct: 652 YVFEKTGFYEYLLARDRASDRINNVESFIDIMDEYDRTNDNGLFGFLEFVDSLSINQSDN 711 Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 R S + VRIMT+H +KGLE PVV L D G + + + + L + Sbjct: 712 IQTTRELSEAEDLVRIMTIHKSKGLEFPVVILADCGKRFNNKHLREPIVFDDDLGIGINL 771 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + + + + + + + K ++E R+LYV MTRA + L I N + Sbjct: 772 SDYENKLRFSSLRKNLINDKITKENKKEEMRILYVAMTRAEEMLFITGERNLKTVGRLKG 831 Query: 679 -------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731 T+ D + D+ +++ N + +A + + I Sbjct: 832 RIDFLNMSTYMDWILSILSRDKVSEELFEEYETNALDGLASLEVIEESDPIDKFESKDIT 891 Query: 732 QLMDEQKIPKKLF----------SPIKNDINEPYILNPSTIDTKGKTNLE---------- 771 + + + ++++ P ++ E + + I +L+ Sbjct: 892 DFLKSEDVNQEIYNKLKQIFDSPYPYEDQTRESIKRSVTEISKDFDPSLDGYRLPNYEEN 951 Query: 772 ------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWP 817 + ++G +IH++ Q + K K I + Sbjct: 952 ELAGDFRKANFIREEKSYKATDKGTMIHRIFQALDFKDYDKVSLKEEIDRLIREKRIEED 1011 Query: 818 AKEYKNLLLSITRLLENPMMTTA--MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875 + + +L I E+P + + + E S +D ++G+ID I Sbjct: 1012 SLDLVDL-DKILGFFEDPFIKDISQKATNIRKEESFLMTY----EDYYVNGQIDLIFEID 1066 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + ++KT + + + Q+ IY + ++ S K + LIY Sbjct: 1067 DKVILIDFKTDRTKRENL------YKKQIQIYRQAIEKSL-GKKVETSLIY 1110 >gi|251809891|ref|ZP_04824364.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis BCM-HMP0060] gi|282874545|ref|ZP_06283430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135] gi|251806556|gb|EES59213.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis BCM-HMP0060] gi|281296684|gb|EFA89193.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135] Length = 729 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 120/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + + + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMNARVEHLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKSENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST +IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKHNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 307 ---------------------LW-------TANSGGDKIQYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + ++ +L R + ++ I Sbjct: 332 VVKEIMKHQRSGK----------KYSEMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + I LI +F + +L R Sbjct: 438 DALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKSGYRDMLDREQS 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQNGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 EE R+ YV +TRA + L I + +S + + + Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLD 640 >gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A] gi|81673999|sp|Q5HN29|PCRA_STAEQ RecName: Full=ATP-dependent DNA helicase pcrA gi|57638043|gb|AAW54831.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A] gi|329734814|gb|EGG71119.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU028] Length = 729 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 120/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + + + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEHLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKSENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST +IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKHNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 307 ---------------------LW-------TANSGGDKIQYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + ++ +L R + ++ I Sbjct: 332 VVKEIMKHQRSGK----------KYSEMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + I LI +F + +L R Sbjct: 438 DALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKSGYRDMLDREQS 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQNGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 EE R+ YV +TRA + L I + +S + + + Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLD 640 >gi|47092374|ref|ZP_00230164.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b H7858] gi|47019151|gb|EAL09894.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b H7858] Length = 1106 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 140/900 (15%), Positives = 300/900 (33%), Gaps = 115/900 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + + + E P L + + + + S + Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + S + T + K+ +E +++ ++ KK R+ N + Sbjct: 285 AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K ++ E K++ VLDF DL +L K + ++ + ++ Sbjct: 345 KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T N+ LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ +G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 +S +L + +S+ + S + + +R IA I M Sbjct: 515 GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566 Query: 357 IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + I + D+ +L+SP+ +E+++ ++ + + + Y Sbjct: 623 ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K I+ ++ ++ + I + G + L Sbjct: 683 DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685 E R+LYV +TRA ++LI+ + ++ + + D + Sbjct: 863 AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922 Query: 686 YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721 ++ K++ LTN + K E + + + + Sbjct: 923 GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982 Query: 722 TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 P++ E ++ +Q + + D L Sbjct: 983 IPVKSPYKDEIQRYMNYEYQNEEATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824 + G +H L+Q + + +++ + + + + K + Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101 >gi|314934070|ref|ZP_07841433.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87] gi|313653181|gb|EFS16940.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87] Length = 731 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 120/715 (16%), Positives = 224/715 (31%), Gaps = 128/715 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVEQLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + Y+ +N LDF+DLI+ T +L ++ + Sbjct: 148 KNELKTPDDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPDA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST +IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 307 ---------------------LW-------TANTGGDKIQYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D+ +L R + ++ I Sbjct: 332 VVKEIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYAVQSNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F + +L R Sbjct: 438 DALGEVDFIGLSKKVTQECINFYETITHLIKEQEFLEISEIVEEVLQKSGYRDMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + V +MT+H+ Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAYIDEADTQTGVTMMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKAD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 EE R+ YV +TRA + L I + +S + + Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEELLE 640 >gi|170755491|ref|YP_001782895.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str. Okra] gi|169120703|gb|ACA44539.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str. Okra] Length = 738 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 107/575 (18%), Positives = 196/575 (34%), Gaps = 116/575 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K N LDF+DLI T +L K + ++ +I++DE QDT+ Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KEVLEFYQRKFRYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+++ L S R + VGD+ Q IY + GA+ +L ++ Sbjct: 227 CQYELVKLLA----------SVHRNICVVGDDDQCIYEWRGADISNILNFEKDY------ 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ +I+L ++RS +IL ++V + Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + + + +Y D A+ A I N+I Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFAASEIKNIIKDSKK-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + + + I D IKDLMA + I + Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ +E + + I + I+ + Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + ++ I S IL ++ + + ++ L E ++ E Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + SL + ++ N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YV +TRA Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 +QL I ++ D V + + + Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639 >gi|205372453|ref|ZP_03225266.1| PcrA [Bacillus coahuilensis m4-4] Length = 739 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 112/629 (17%), Positives = 211/629 (33%), Gaps = 115/629 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 +A + Y++ +KN LDF+DLI+ T L +K + ++ +I +DE QD Sbjct: 171 QVASDVYIEYQKRLRKNQALDFDDLIMTTIQLFQK---VPEVLEYYQRKFQYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ + F + L VGD QSIY + GA+ +L ++ + Sbjct: 228 TNRAQYMLVKLMASRF----------QNLCVVGDSDQSIYGWRGADIANILSFEKDYPR- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 S+I L ++RST IL + V N + Sbjct: 277 -------ASVIFLEQNYRSTKRILQAANHVIENNANRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ ++ + + A+ +A I +M+ + Sbjct: 311 --LW-------TDNMEGEKITYYRGDNQQGE-------AQYVAGQIKSMVDSGKR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +I +L R + +I + I D IKD++A R Sbjct: 350 ----KLSEIAILYRTNAMSRVIEEVL----LKSNIQYSIVGGTKFYDRKEIKDILAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481 + + +DD+S ++ P + KI +++ + + Sbjct: 402 VANPDDDISLQRIINVPKRGVGSTSLDKIARYADDHNISMFRALGEADFIGVSPKVAKAL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + ++ S + IL R + E ++ +DEFL+ T Sbjct: 462 LEFRHLVLGYEQQQEYLSVTELVEEILEKSGYRDMLKAEKSIESQSRLENIDEFLSVTKS 521 Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E + SL +++L + V +MT+H+AKGLE PVVFL+ Sbjct: 522 FEDTSEDKSLVSFLTDLALVADIDSLDEDDLPQDAVTLMTLHSAKGLEFPVVFLMGMEEG 581 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 VF H RL YVG+T Sbjct: 582 VFPHSRSLMEEDEMEEE----------------------------------RRLAYVGIT 607 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI-NKDEWIAYEWS 715 RA ++L + + ++N + + I+ + + Sbjct: 608 RAEEELFLTNAQMRTLYGRTNMNPVSRFIGEIPDELLDNMAIESPAVSRPGSPFQRQQQP 667 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLF 744 T P + P+ + T + + + K + Sbjct: 668 TRRPVSRPISQTTTGGEKVGWKVGDKAVH 696 >gi|168183573|ref|ZP_02618237.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf] gi|237796712|ref|YP_002864264.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str. 657] gi|182673320|gb|EDT85281.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf] gi|229262342|gb|ACQ53375.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str. 657] Length = 738 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 108/587 (18%), Positives = 200/587 (34%), Gaps = 116/587 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K N LDF+DLI T +L K + ++ +I++DE QDT+ Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTNKEA---LEFYQRKFKYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+++ L S R + VGD+ Q IY + GA+ +L ++ Sbjct: 227 SQYELVKLLA----------SVHRNICVVGDDDQCIYEWRGADISNILNFEKDY------ 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ +I+L ++RS +IL ++V + Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + + + +Y D A+ +A I +I Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSEK-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + + + I D IKDLMA + I + Sbjct: 346 -SFNDFSVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ +E + + I + I+ + Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + ++ I S IL ++ + + ++ L E ++ E Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + SL + ++ N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YV +TRA Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 +QL I ++ D V + + + I + +K Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKDNVNIAGEVATDK 651 >gi|238923773|ref|YP_002937289.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656] gi|238875448|gb|ACR75155.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656] Length = 763 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 126/695 (18%), Positives = 224/695 (32%), Gaps = 125/695 (17%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T ++ + + L + + I T+ +K + ++ Sbjct: 89 TCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKRLEIDTKMYKEKM--FLNVISSAK 146 Query: 105 DEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 DE I + T K A + Y+ A K+N LDF+DL++ T +L K Sbjct: 147 DEMIDPIEFENRFTGDFVKRKQAL------VYKEYQNALKQNNALDFDDLLVKTVELFK- 199 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + + +I++DE QDT+ +Q+E+IR L + + L VGD+ Sbjct: 200 --LDKEVLDYYQERFRYIMVDEYQDTNTVQFELIRLLAMKY----------KNLCVVGDD 247 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY F GA +L ++ + +I+L ++RST +IL + V S Sbjct: 248 DQSIYKFRGANIYNILNFEKHFE--------DAKVIKLEQNYRSTQNILDAANSVISNNV 299 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + LW + + + Sbjct: 300 GRKDKR---------------------LWTDNGAGDRITFEQLESGF------------- 325 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A +A +I+ ++ + KD VL R + L I Sbjct: 326 -EEADYVARSIARLVRKGE---------ARYKDCAVLYRTNAQSRLFEEKFIA----ANI 371 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRH 461 IKD++A + I + DDL+ ++ P I K+ Sbjct: 372 PYKIVGGVNFYARKEIKDILAYLKTIDNGHDDLAVKRIINVPKRGIGATSINKVTDYAIE 431 Query: 462 ETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + Y ++ K + + +I L A+ S I+ + Sbjct: 432 KGIDFYTALRYVDEVPGMARSAGKIKPFVMFIQSLRARAEMDSVSQLIQAIIDETGYVDE 491 Query: 517 FISRFGNEVI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEV 572 + +E + +DE +N + EQ +L + E+ N + V Sbjct: 492 LKAEGTDEAEQRIENIDELINKAVDYEQGEENPTLSGFLEEVALVADIDG--LDENSDYV 549 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H+AKGLE P V+L +F Sbjct: 550 VLMTLHSAKGLEFPNVYLAGMEDGLFPS-------------------------------Y 578 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN- 691 + S EE RL YVG+TRA + L I ++ V + Sbjct: 579 MSITSDDATSEIEEERRLAYVGITRAKEHLTITSARMRMVRGETQFNKVSRFVKEIPREL 638 Query: 692 --DERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 E + + + I ++ Y + + TP Sbjct: 639 MSGEVYEPKRRDDDIERNSQSTYRKAKEAFKKTPT 673 >gi|315187403|gb|EFU21159.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578] Length = 1149 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 150/839 (17%), Positives = 288/839 (34%), Gaps = 61/839 (7%) Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + + T + + + E KK+ +L F D++ LLK+ +R Sbjct: 314 KDLVALLERREETSSLFGVLAEWHREVERFKKERNLLTFGDVMHLVLTLLKEE---KGVR 370 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-----HSSPRTLFAVGDEKQS 225 + IL+DE QD + +Q +++ L E + P LF VGDEKQS Sbjct: 371 EFYKGRFDAILVDEFQDNNGLQRDLLYLLAERKGRCADGVPSFEDLEPGKLFVVGDEKQS 430 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F GA+ L K N +I LP ++RS +L V+++ Sbjct: 431 IYLFRGADVGVFLDLKER-----ANKSSHGEVIRLPHNYRSEPGLLEAVNRM---AGAFP 482 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + + R G T ++ V + + + + + Sbjct: 483 EEMRGGIEFLPAEAGREGAGFTPRIEAGVYVKGEEEARAEGRDLVDAG---------TAE 533 Query: 346 ARRIAYTISNMIGTDTI--FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 A +A I + + R ++ D+ VL+R + R + I Sbjct: 534 AWWVAGRIRRWVEEGALMVRDGEGVRPVRYGDVAVLMRTGTNQLAFERAFRA----HGIP 589 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 + L DL + + D LS+ +L+ PL S+ I ++ + Sbjct: 590 YTASYSRNLFLEGPANDLFSWLFIAVYPHDLLSYAAVLRGPLVGLSDAGILRLIEREEGC 649 Query: 464 ETVY-EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRF 521 ++ E + +++ + H L + R + Sbjct: 650 FSLPPEEARGVLGDEAERYERAREIYHWLASHRDRVVHERLLRYLWVDCGYRMVLLGQEH 709 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581 + + DE + F R E+ + + + E + + VRIMT+H AK Sbjct: 710 LHPFLRFYDELVAFVRRWEERPLARCLDEVKEQLGRYGRVDVEEGGGGDAVRIMTIHAAK 769 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVV L G++ K + M G K N + + +K+ Sbjct: 770 GLEFPVVVLASCGAESRREGEGKMPYFMVEGAPVFGFEGDDGGKK-ENPLYRRAAEEVKR 828 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR----------TWYDMVYDSFHN 691 EE RLLYV +TRA L++ + KK ++ ++++ Sbjct: 829 REGEEMLRLLYVALTRAECHLLVTGEWRGAVGKKKGNGSEDGSKKTVLSFMSLLFEMTEE 888 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + V+ I EW E E +R + + ++ + + Sbjct: 889 EPEVRFRADREGIEGVEWRDPERIPGITEEDLRKRIGSGSRGGRWEEAARWYEEVDEGVG 948 Query: 752 N-EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYC 809 P ++ S + + + + + G ++H+ + + L + R + + Sbjct: 949 RVRPGAVSVSVLAGEWEAERRGEATG-KGAVFGSLVHRGMVLWARLGDEGRVREALRGEA 1007 Query: 810 TKNAKLWPAKEYKNLLLSITRLLE----NPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865 E T L+ + + + + EV + + + ++ Sbjct: 1008 LAWGGDGEWGEVDRACEEATALVRRWAGSEVGREVLGNGAGWEVECAAEW----EGWVVH 1063 Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 G +D + + + I+E+KT E E + AQL +Y I +P + + C+L Sbjct: 1064 GVMDAVWVGDGVVRIYEWKT------EEEPDVERYRAQLFLYGLIASRVWPGRRVECVL 1116 >gi|291528122|emb|CBK93708.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1] Length = 763 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 125/695 (17%), Positives = 224/695 (32%), Gaps = 125/695 (17%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T ++ + + L + + I T+ +K + ++ Sbjct: 89 TCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKRLEIDTKMYKEKM--FLNVISSAK 146 Query: 105 DEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 DE I + T K A + Y+ A K+N LDF+DL++ T +L K Sbjct: 147 DEMIDPIEFENRFTGDFVKRKQAL------VYKEYQNALKQNNALDFDDLLVKTVELFK- 199 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + + +I++DE QDT+ +Q+E+IR L + + L VGD+ Sbjct: 200 --LDKEVLDYYQERFRYIMVDEYQDTNTVQFELIRLLAMKY----------KNLCVVGDD 247 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY F GA +L ++ + +I+L ++RST +IL + V S Sbjct: 248 DQSIYKFRGANIYNILNFEKHFE--------DAKVIKLEQNYRSTQNILDAANSVISNNV 299 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + LW + + + Sbjct: 300 GRKDKR---------------------LWTDNGAGDRITFEQLESGF------------- 325 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A +A +I+ ++ + KD VL R + L I Sbjct: 326 -EEADYVARSIARLVRKGE---------ARYKDCAVLYRTNAQSRLFEEKFIA----ANI 371 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRH 461 IKD++A + I + DDL+ ++ P I K+ Sbjct: 372 PYKIVGGVNFYARKEIKDILAYLKTIDNGHDDLAVKRIINVPKRGIGATSINKVTDYAIE 431 Query: 462 ETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + Y ++ K + + +I L A+ S I+ + Sbjct: 432 KGIDFYTALRYVDEVPGMARSAGKIKPFVMFIQSLRARAEMDSVSQLIQAIIDETGYVDE 491 Query: 517 FISRFGNEVI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEV 572 + +E + +DE +N + EQ +L + E+ N + V Sbjct: 492 LKAEGTDEAEQRIENIDELINKAVDYEQGEENPTLSGFLEEVALVADIDG--LDENSDYV 549 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H+AKGLE P V+L +F Sbjct: 550 VLMTLHSAKGLEFPNVYLAGMEDGLFPS-------------------------------Y 578 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN- 691 + S EE RL YVG+TRA + L I ++ V + Sbjct: 579 MSITSDDATSEIEEERRLAYVGITRAKEHLTITSARMRMVRGETQFNKVSRFVKEIPREL 638 Query: 692 --DERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 E + + + + ++ Y + + TP Sbjct: 639 MSGEVYEPKRRDDDLERNSQSTYRKAKEAFKKTPT 673 >gi|210608461|ref|ZP_03287837.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787] gi|210153037|gb|EEA84043.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787] Length = 741 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 115/638 (18%), Positives = 203/638 (31%), Gaps = 114/638 (17%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 + +D T + ++ A + YE+ + N LDF+DL++ T Sbjct: 137 RNLLAAISSAKDELITPEEYELNAAGDFGKQKIAKVYKEYEKQLRANNALDFDDLLVKTV 196 Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 L + + + + +I++DE QDT+ +Q+E+IR L + + R L Sbjct: 197 QLFQTQPE---VLDYYQERFRYIMVDEYQDTNTVQFELIRILAKKY----------RNLC 243 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD+ QSIY F GA K +L + + + +I+L ++RST +IL + V Sbjct: 244 VVGDDDQSIYKFRGANIKNILNFEHVFE--------DAKVIKLEQNYRSTGNILNAANAV 295 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 + S LW + +++ + Sbjct: 296 IKNNFGRKEKS---------------------LW-------TENGEGDKIAFSQFDSGYD 327 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 + A I I + D VL R + + Sbjct: 328 E-------AEYIVGDIKEHVNNGIR---------TYNDHAVLYRTNAQSRMFEEKF---- 367 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 I IKDL+A + I + +DDL+ ++ P I ++ Sbjct: 368 VTANIPYKIVGGINFYARKEIKDLLAYLKTIDNGKDDLAVRRIINVPKRGIGLTTINRVQ 427 Query: 458 T-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 + YE ++ +SK + + I A+ S D IL Sbjct: 428 ENALERGVSFYETLRAADLIPNIGRSVSKLESFVALIEHFKSEAKNMSICDLMQEILDMT 487 Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSA 567 + S E + +DE +N E++ + L LE+ Sbjct: 488 GYIEDLKSEGDIEAETRIENIDELMNKIAAYEESCEDEMPTLSGFLEEVALVADIDSLDE 547 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + + V +MT+H+AKGLE P V+L +F Sbjct: 548 DSDYVVLMTLHSAKGLEFPEVYLAGMEDGLFPSYMT------------------------ 583 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687 I + EE RL YVG+TRA + L + ++ + + Sbjct: 584 --------ITSDDPTEVEEERRLCYVGITRARENLTLTCARRRMVRGETQYNKMSRFLKE 635 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 N + + + AY + Sbjct: 636 IPVNLLSTGNLIEKDEKEVPKQNAYMQAKQAFRTQAFA 673 >gi|239947179|ref|ZP_04698932.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921455|gb|EER21479.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes scapularis] Length = 847 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 172/637 (27%), Positives = 296/637 (46%), Gaps = 54/637 (8%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K+++++E+ +K P L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHEWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHS----------------------SPRTLFAVGDEKQSIY 227 +QW +I +L +F + T+F VGD+KQSI+ Sbjct: 357 PLQWNIITTLITEFNAADKPQNVIPWLDHGIQEKIKKDWIPLQARGMTIFIVGDDKQSIF 416 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 SF GA+ + TNA +KF I L S+RS A+IL V ++ Sbjct: 417 SFQGADLHNFSLVNEKLKANLTNANKKFKNITLEYSYRSCAEILQFTHNVLKNIKSDYPN 476 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 S + SS G V +W V S+ ++ W D +S+A +L Sbjct: 477 LFLSDNPL--ISSFRTHQGIVTVWPLVTSEKQ-----EELFWVLPEDYENSKSAADLLIE 529 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +I I I ++ I + R I KD ++LVRKR + + + K+ V + Sbjct: 530 KIVNFIKEQIESEEILPSTAHR-ISEKDFIILVRKRDE---FSKNLIKELSKAKLKVETS 585 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 DR L ++L I DLM++ +F+L +DDL+ +LKSP+ +E ++++ +++ Sbjct: 586 DRINLKENLTIMDLMSVAKFVLLPDDDLNLAGLLKSPIIGMNEQQLYELLVNKNDNS--- 642 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527 +S ++ + ++ LI I + + +FF L + R+ + G++ + Sbjct: 643 ------LWDNLSAYEEIYAKLNSLIEIYKISTVENFFDLAVNNLNLRENLNAYNGDDSNN 696 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 +++E L + + +SLQ ++ E IK + +++R+MTVH +KGLE+P+ Sbjct: 697 IINELLTLSKNYVNDIDNSLQGFVAWFENNDIYIKHDM-EHSDKIRVMTVHGSKGLEAPI 755 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V L D + + DD G + + + +L + K +EY Sbjct: 756 VILCD--------STTLPVSSNKFIWDDKGEMFFSANAADTPRFLQELKEAEKLKDLQEY 807 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 RLLYV MTRA DQLIIC SN+ + WY++ Sbjct: 808 IRLLYVAMTRAKDQLIICGF---SNKAAIPENCWYEI 841 >gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT] gi|118133465|gb|ABK60509.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT] Length = 760 Score = 321 bits (822), Expect = 4e-85, Method: Composition-based stats. Identities = 120/651 (18%), Positives = 226/651 (34%), Gaps = 124/651 (19%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKY 132 L ++ + NI ++IN+ ++ K+ K +D I + + K F+ Sbjct: 119 LVKQCMKELNISDKDINE--KEIISKIGKQKDNLITAEEYKKRNEKDFRKNR-----IAD 171 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ K + LDF+DLI T +L KK + + +I++DE QDT+ Q Sbjct: 172 VYLLYQKKLKNSNALDFDDLIFKTVELFKKHPE---VLEFYQNKFKYIMVDEYQDTNKTQ 228 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +++++ L + R +F VGD+ Q IY + GA+ K +L ++ + Sbjct: 229 YQLVKMLAA----------AHRNIFVVGDDDQCIYQWRGADIKNILDFEKDYPE------ 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 +++L ++RS A+IL + V + Sbjct: 273 --AKVVKLEENYRSKANILNAANTVIKHNSQRKNKVL----------------------- 307 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + ++ + + + +Y D I+ I +I + Sbjct: 308 ----RTQNENGEKIKIYRAYSDMDEGL--------FISNEIKRLIKKENR---------S 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KD +L R + + + I D IKD+ A +FI + + Sbjct: 347 YKDFAILYRTNAQSRVFEDVF----MKRDIPYRIIGGLKFYDRKEIKDITAYLKFINNLQ 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVI 485 DD+S ++ P + KI + + E I + IS Sbjct: 403 DDISLKRIINVPKRAIGAATVSKIQDFANYMDECMYSVLLDVENIPGLSKRSISSINKFT 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 I+ S + IL + ++ E I+ + E ++ + E Sbjct: 463 SLINGFTRTKDKVSVSNLIQEILESTGYMKELKDSNEIEDISRIENIKELVSAAVEFENT 522 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + SL + ++ + + +MT+H+AKGLE PVVF+V + +F Sbjct: 523 SEDKSLSAFLEKITLVSDVDNYD--EDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFPG- 579 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YVG+TRA +Q Sbjct: 580 ---------------------------------AQSLENFAEMEESRRLCYVGITRAKEQ 606 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 L + S +S + D + + N + + + T S K + Sbjct: 607 LYMTSASTRKVFGRSVAYSESDFINEISPNLKEMVREGRTESAVKSSTVRL 657 >gi|241895871|ref|ZP_04783167.1| ATP-dependent deoxyribonuclease, subunit A [Weissella paramesenteroides ATCC 33313] gi|241870914|gb|EER74665.1| ATP-dependent deoxyribonuclease, subunit A [Weissella paramesenteroides ATCC 33313] Length = 1269 Score = 321 bits (822), Expect = 4e-85, Method: Composition-based stats. Identities = 145/969 (14%), Positives = 313/969 (32%), Gaps = 155/969 (15%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA---SLTLA 130 T+K P+ I + + LK++ +++ + + + + L Sbjct: 301 FTKKHDPELKIAWDRVKDEREALKKRFTIVLEKYFVLDQAGLVLAIQGAGRVIDRLVKLT 360 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 K + + K + VLDF DL ++ + ++ ++ + I++DE QDT+ Sbjct: 361 KDFSTDFLTEKLRRKVLDFNDLEHFALQIVSQE----KVKAELQERYTEIMVDEYQDTNQ 416 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q ++ +T LF VGD KQSIY F A+P + Sbjct: 417 LQEAILHEITS-----------GDNLFQVGDIKQSIYKFRQADPTLFAGKLATYPSD--- 462 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ- 309 +I L +FRS ++ ++ +F+ + + T + + Sbjct: 463 --TISEVITLQENFRSQPNVTNFINYIFAQAMSRSLGDIEYTGEAELVAGADYYPEELPK 520 Query: 310 -----LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 L+ +Q +S + + ++ S + A+ R A I ++ + Sbjct: 521 KAELLLYLDDANQDESPADAEVDAEADTLASDAPYTKATGQIRLTALKIQELMQSKFEIF 580 Query: 365 NG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 + KKR + DI +LV + + + R + I ++ + I + Sbjct: 581 DRQAQKKRPVNYGDITILVPTKGQNLDVLDVFREM----NIPIMIDGTENYFQTTEISVI 636 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---------------ETV 466 M+ + I + D+ V +L+SPL++ E+ + I Q E +T+ Sbjct: 637 MSFLQVIDNPHQDIPLVAVLRSPLYDIGENGLALIRAQTPEEDFYTAVKNLANDDEIDTI 696 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525 + ++ Q + + +A I G + Sbjct: 697 GDISPALVKNTQTQVQRFLADLAVFRDLAVQNQIVTLLWAIYNRTGWLDYVGGLPSGAQR 756 Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAK 581 L + +++S+ L + I+ + Q K + + V +MT+H +K Sbjct: 757 QANLHALYDRASAYQKSSFVGLYQFINYVTQLQSHDKDLGEADANVAQDSVSLMTIHHSK 816 Query: 582 GLESPVVFLVDTGSQVFSHK-HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 GLE P+VFL++ + S + + + K + + + Sbjct: 817 GLEFPIVFLLNATRTMISQRETQGSIILDAQAGGGMNYVDLQHHLKLITPQHEYIAQVKR 876 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTW 681 ++ E R+LYV +TRA QL I + ++ + +++ Sbjct: 877 QNAYAEQLRVLYVALTRAEQQLFIVGAYDNVDKLWQTWQQSAGVTEWMLPDTVRLAGKSF 936 Query: 682 YDMVYDSFHNDERVKKIKLT----------------------------NSINKDEWIAYE 713 D++ + + + IN + + Sbjct: 937 MDLLGMTLIRHPQAPEQFAPLRGYDVNDVMQFDEIRTKTPKNAFAFDLEVINTQDLVNRV 996 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPK---KLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + + ++ ++ + +E + + P + + S I + Sbjct: 997 ANYQPLSDDIVDTKDVTETSAEENTDWQSVLQFAYPYETATRATAYQSVSEIKRLFEDPD 1056 Query: 771 ESL---------------------------------LSDNQTFNRGLIIHKLLQVIFTLP 797 + + + G H ++Q + Sbjct: 1057 LAEGRQLLDRRLVTDDLAGLRMTDEELPEPDFMQESATRLSSAAIGTATHLVMQRLDLTK 1116 Query: 798 EHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLEN-PMMTTAM--SCDSYSEVSV 851 + I + + N KL K + + I R + P+ + + EV Sbjct: 1117 GVPTEVVIRTLIQQLVNEKLIDDKIAPLISVAKIGRFFNDSPLGKQMIQHADSLRREVPF 1176 Query: 852 SGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI-EHIPYTHIA 902 S ++ +++ G ID I++F+YKT H Q + + Sbjct: 1177 SLLLDAKRLYRAFDGDDKVLVHGIIDGYFQVDDEIWLFDYKTDHVSQQAATNILTKRYAG 1236 Query: 903 QLSIYEKIL 911 QL+IY + L Sbjct: 1237 QLNIYAQAL 1245 >gi|254423127|ref|ZP_05036845.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335] gi|196190616|gb|EDX85580.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335] Length = 784 Score = 321 bits (822), Expect = 4e-85, Method: Composition-based stats. Identities = 122/684 (17%), Positives = 227/684 (33%), Gaps = 107/684 (15%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETG--NPTILKKAQTLQQAS----QTQ 60 + ES K LP + + Y+ + G T + + Q+ Sbjct: 79 FAEQESLARHGKPFHMLPEREQIQLRSYIYKTFIKGLWVGTFHALCARILRYDIEKYQSA 138 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + S F + + K+I+ +N + + +++ T + Sbjct: 139 DGQRWTKSFSIFDESDAQSLVKSIVISGLNLDDRKFNPR--SVRFAISNAKNQGFTPDQY 196 Query: 121 KSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + Y++ N LDF+DLI L ++ + + + Sbjct: 197 EQENPHFKGRTIAEVYRLYQKGLSANNALDFDDLIRMPVQLFRQNE---QVLDYWHRRFR 253 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 HIL+DE QDT+ Q+++I+ L + + R++F VGD QSIYSF A+ ++ Sbjct: 254 HILVDEYQDTNRTQYDLIQLLATNGKGKGFDDWNNRSVFVVGDADQSIYSFRAADFTILM 313 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + T+ + ++++L ++RST++IL V + + +T Sbjct: 314 GFQTEFGDGLTDDETQ-TLVKLEENYRSTSNILDVANHLIENNTERIDKILRATR----- 367 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + + ++ A + I N+ Sbjct: 368 ------------------------------GEGDSILCHRADNEAMEAEYVVGQIRNL-- 395 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 K +Q +D +L R + + + + I D I Sbjct: 396 ------ELKNPELQWQDFAILYRTNAQSRAMEEVL----TRFGIPYRVVGGLRFYDRREI 445 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK----- 472 KD++A R ++ D +S ++ +P + + + E +++E IQ Sbjct: 446 KDMLAYMRLAVNPADSVSLKRIINTPRRGIGKTTLDNLDKAASELGVSLWEIIQDETSVK 505 Query: 473 -FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDV 528 A K + I P + +L S+ E I+ Sbjct: 506 TLAGRAGKKVTGFAEMIKGWQERVDSVGPAELVQDVLEQTGYIDSLKSKGTEEDETRIEN 565 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 + E N ++ E+ + L++ L + R S N+V +MT+H +KGLE PVV Sbjct: 566 IQELYNAVVQFEEENED--ATLLTFLANASLSTDRDDSDEGNQVTLMTLHASKGLEFPVV 623 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FLV +F + EE Sbjct: 624 FLVGLEQGLFPS----------------------------------FRSLEDAAAIEEER 649 Query: 649 RLLYVGMTRASDQLIICKHSNTSN 672 RL YVG+TRA D+L I Sbjct: 650 RLCYVGITRAQDRLFISHARERRT 673 >gi|323141943|ref|ZP_08076800.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp. YIT 12067] gi|322413578|gb|EFY04440.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp. YIT 12067] Length = 1140 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 142/963 (14%), Positives = 293/963 (30%), Gaps = 84/963 (8%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 E + + ++ + + + ++ + + Sbjct: 194 REDNLAEPYLKAKEELPALQQKLFAAVREVIEAREALGAKTKGRQTLTEAAGLLDEMQKQ 253 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132 L + + + L +L ++ ++ K L + + Sbjct: 254 LLAPEPECSLLDASGVVKVSGKALAAELTNLKNLRQELNHVLLNAKGCDLVQDWLAVLQE 313 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 A K++N +L +DL + + L+K + +R K + +I++DE QDT+ Q Sbjct: 314 FYACLSARKQENNILFNDDLDLLAIEHLQKNEA---LRQKYQERYKYIMVDEFQDTNERQ 370 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++I L + G LF VGD KQSIY F A+ + K + Sbjct: 371 RQLIYLLCGNKLDG------KNNLFIVGDVKQSIYRFRHADVSVFNKVKEDIAQ------ 418 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + + +FRST I+ + F + + H V L + Sbjct: 419 NAGQNLGMKTNFRSTQSIVESCNTAFCQLMD----LPKEEICLEHHEGANTGGAKVCLLQ 474 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 D +++ W ++ A I+ + + + R Sbjct: 475 VPYKSKDDDLGAKEDKW-----------------QKEAEAIAAYLQQELPKVEPQLRPGA 517 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +K +L+R + R Y I+ V + + D++ L + ++ Sbjct: 518 SK--AILLRAMTHC----EILRQTLQGYGINCVVVKGKGFYEQQEVLDILNLLAVLHNRY 571 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---------EYIQKFANCGISKFQH 483 L L+S F + + ++ Q + ++ E + Sbjct: 572 TSLELAGALRSNYFGLDDATLTQLFWQTENDKPLWDVLQAVGSGELQLNLQPEQQALAMQ 631 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQN 542 + + L A + + F + K G + + + + Q Sbjct: 632 AAERLRSLRQAAALMALPELFAQLWDELKPEFVLSQQENGPSKLANVKKLRRLAQQYCQT 691 Query: 543 SYSSLQELIS---ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +SL E + +L A + ++IMT+H +KGLE +V L V Sbjct: 692 KQASLAEWLQNVKDLRASSSKEPAATVQADDALQIMTIHNSKGLEFDLVILPQLDKSVKG 751 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 K + + + + +EE RLLYV MTR Sbjct: 752 DTASIKYFSGKEGEQGLLGIKVPDKEMQLQNSGVYELAKARDSELEEEESRRLLYVAMTR 811 Query: 658 ASDQLIICKHSNTSN------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 A QL++ + + W + + ++ + + + ++ Sbjct: 812 AKKQLLMVGTVAEEKLPEAVIALPAAKGWWQQLQAVYEVDWDKQESSCPWVRLLCADALS 871 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 + + L + F+ LE Sbjct: 872 PAVVQQGVQQQLALEPLALAPLPAYAACGRTCFTASALQTYLHCQRQYYYQQVLAVPELE 931 Query: 772 SLLSDNQTFNR-----GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 ++ Q G I+HK L++ + A A + K++ Sbjct: 932 QTVAGEQAHELPASVTGSIVHKALELYNGYNAEAVFAIA---LDEFAPGAAATQAKSMFD 988 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKT 885 + + + + E+ + G ID + N+ I +YKT Sbjct: 989 ---AYISSDLYKSLPKKQ-KRELEFVQPLQQELAA---EGVIDLLAFDEDDNMIIVDYKT 1041 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL-LIYVSEPKVFIIPQNK--LNK 942 E + + + QL++Y+ + YP K +VC L ++ V+ +P +K L + Sbjct: 1042 GTPP--EPDEVKLGYAYQLALYKDAAEKLYPGKRVVCAELHFLQNMSVWQLPLDKSYLQE 1099 Query: 943 AFA 945 A Sbjct: 1100 AIE 1102 >gi|254517672|ref|ZP_05129728.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA] gi|226911421|gb|EEH96622.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA] Length = 749 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 99/576 (17%), Positives = 201/576 (34%), Gaps = 116/576 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K+N LDF+DLI T +L K ++ +I++DE QDT+ Sbjct: 180 ADVYEMYQKRLKENNALDFDDLIFKTVELFKHD---KETLEFYQRKFQYIMVDEYQDTNK 236 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+E+IR L + + + + VGD+ Q IY + GA+ + +L ++ Sbjct: 237 VQYELIRLLADKY----------KNVCVVGDDDQCIYQWRGADIRNILDFEKDYP----- 281 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RS +IL + V N + Sbjct: 282 ---DAKVIKLEQNYRSKGNILDAANVVIVNNANRKSKVL--------------------- 317 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + + + + +Y DS + +A I+ + + Sbjct: 318 ------RTEQESGNKIKIYRAYSDSDEGD--------FVATQINKIKEEENK-------- 355 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD +L R + + R I D IKD+++ + +++ Sbjct: 356 -SYKDFAILYRTNAQSRIFEESLR----RKAIPYKILGGTRFYDRKEIKDMISYLKVLVN 410 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQH------ 483 D +S ++ P + + K + +++ + N ++ Sbjct: 411 PTDSISLRRIINVPKRGIGDATVNKVVDFADDYELPLWDALSTVRNIPTLTARNCGGIEI 470 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 ++ + + + +++ IL + E I+ L E ++ + E Sbjct: 471 FMEMMDKFMEMSEIMPVSTLIETILKETGYISELEKSKEIEDKSRIENLKELVSDAVDFE 530 Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++S + L + LE+ + + +MTVH+AKGLE PVVF+V + +F Sbjct: 531 RSSED--KSLSAYLEKVSLVQDTDKLQEEEDTIVLMTVHSAKGLEFPVVFMVGMENGIFP 588 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 589 GNASF----------------------------------ESDAEMEESRRLCYVGITRAK 614 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 +QL + ++ D + + + + Sbjct: 615 EQLFMTSAEVRRQFGRTVAYPQSDFIAEIKGDLKEY 650 >gi|82751561|ref|YP_417302.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] gi|82657092|emb|CAI81529.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] Length = 730 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|291525748|emb|CBK91335.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629] Length = 763 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 126/695 (18%), Positives = 224/695 (32%), Gaps = 125/695 (17%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T ++ + + L + + I T+ +K + ++ Sbjct: 89 TCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKRLEIDTKMYKEKM--FLNVISSAK 146 Query: 105 DEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 DE I + T K A + Y+ A K+N LDF+DL++ T +L K Sbjct: 147 DEMIDPIEFENRFTGDFVKRKQAL------VYKEYQNALKQNNALDFDDLLVKTVELFK- 199 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + + +I++DE QDT+ +Q+E+IR L + + L VGD+ Sbjct: 200 --LDKEVLDYYQERFRYIMVDEYQDTNTVQFELIRLLAMKY----------KNLCVVGDD 247 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY F GA +L ++ + +I+L ++RST +IL + V S Sbjct: 248 DQSIYKFRGANIYNILNFEKHFE--------DAKVIKLEQNYRSTQNILDAANSVISNNV 299 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + LW + + + Sbjct: 300 GRKDKR---------------------LWTDNGAGDRITFEQLESGF------------- 325 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A +A +I+ ++ + KD VL R + L I Sbjct: 326 -EEADYVARSIARLVRKGE---------ARYKDCAVLYRTNAQSRLFEEKFIA----ANI 371 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRH 461 IKD++A + I + DDL+ ++ P I K+ Sbjct: 372 PYKIVGGVNFYARKEIKDILAYLKTIDNGHDDLAVKRIINVPKRGIGATSINKVTDYALE 431 Query: 462 ETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + Y ++ K + + +I L A+ S I+ + Sbjct: 432 KGIDFYTALRYVDEVSGMARSAGKIKPFVMFIQSLRARAEMDSVSQLIQAIIDETGYVDE 491 Query: 517 FISRFGNEVI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEV 572 + +E + +DE +N + EQ +L + E+ N + V Sbjct: 492 LKAEGTDEAEQRIENIDELINKAVDYEQGEENPTLSGFLEEVALVADIDG--LDENSDYV 549 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H+AKGLE P V+L +F Sbjct: 550 VLMTLHSAKGLEFPNVYLAGMEDGLFPS-------------------------------Y 578 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF--- 689 + S EE RL YVG+TRA + L I ++ V + Sbjct: 579 MSITSDDATSEIEEERRLAYVGITRAKEHLTITSARMRMVRGETQFNKVSRFVKEIPREL 638 Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 E + + + I ++ Y + + TP Sbjct: 639 MAGEVYEPKRRDDDIERNSQSTYRKAKEAFKKTPT 673 >gi|330685592|gb|EGG97238.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU121] Length = 730 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 121/712 (16%), Positives = 224/712 (31%), Gaps = 128/712 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + + + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEQLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ + Sbjct: 148 KNELKTPEDAQKEANDYHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPEA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +I+ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLIKLLANKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEEDYP--------DAKTIFLEQNYRSTKTILNAANEVIKNNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 307 ---------------------LW-------TANTGGDKINYYEATTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D+ +L R + ++ I Sbjct: 332 VVREIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGVGPSSVEKIQTYAVQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + I LI +F + +L R Sbjct: 438 DALGEVDFIGLSKKVTQECIAFYEMIQNLIKEQEFLEISEIVEEVLVKSGYRDMLDREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTESGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE R+ YV +TRA + L I + +S + + + Sbjct: 586 DDHEMEEERRICYVAITRAEETLYITNATTRMLFGRSQSNMPSRFLKEIPED 637 >gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14911] gi|89088465|gb|EAR67575.1| PcrA [Bacillus sp. NRRL B-14911] Length = 746 Score = 321 bits (821), Expect = 4e-85, Method: Composition-based stats. Identities = 115/660 (17%), Positives = 214/660 (32%), Gaps = 116/660 (17%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146 + ++ K D + L ++ D K +A + Y+ +KN Sbjct: 132 KNLDPKKYDPRAILGSISSAKNELIDPEEYAKAAG--GYFEQIASDVYTEYQRRLRKNQA 189 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ + + F Sbjct: 190 LDFDDLIMTTIQLFQR---VPEVLEYYQRKFQYIHVDEYQDTNRAQYMLVKLMADRF--- 243 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 + L VGD QSIY + GA+ +L ++ Q I L ++RS Sbjct: 244 -------KNLCVVGDSDQSIYRWRGADIANILSFEKDYQN--------ARTILLEQNYRS 288 Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 T IL ++V + N + + + ++ Sbjct: 289 TKRILLAANEVIAKNLNRKAKNLWTENAEGNKLFHY------------------------ 324 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386 + S + +A I M+ + + +I +L R + Sbjct: 325 -----------RADSEQGEGQFVAGKIKEMVDSGKR---------KYSEIAILYRTNAQS 364 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 ++ + I D IKD++A R I + +DD+S ++ P Sbjct: 365 RVMEEVL----LKSNIEYSIVGGIKFYDRKEIKDILAYLRLIANPDDDISLQRVINVPKR 420 Query: 447 NFSEDDIFKI-CTQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSP 500 + KI + T+Y+ + I + ++ S Sbjct: 421 GIGSGSVDKIANFAQMHDMTMYQALDALDLIGLSPKITKAATEFRDLIRSYEQMQEYLSV 480 Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556 + +L R + E + +DEFL+ T E + +L +++L Sbjct: 481 TELVEEVLEKSGYRDMLKAEKSIEAQSRLENIDEFLSVTKNFEDGSEDKTLVAFLTDLAL 540 Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 K + V +MT+H+AKGLE PVVFL+ VF H Sbjct: 541 VADIDKLEDDGTKTDSVVLMTLHSAKGLEFPVVFLIGLEEGVFPHSRSLMEEAEMEEE-- 598 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 RL YVG+TRA ++L I + + Sbjct: 599 --------------------------------RRLAYVGITRAEEELYITNAQMRTLFGR 626 Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735 +N + + + + K + A R+ +K + Sbjct: 627 TNMNPPSRFIQEIPADLIEGIEPKKASPSPFGSPAAGGRQPSSSAPRQAMRKAVVKPAVA 686 >gi|168186071|ref|ZP_02620706.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str. Eklund] gi|169296014|gb|EDS78147.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str. Eklund] Length = 760 Score = 321 bits (821), Expect = 5e-85, Method: Composition-based stats. Identities = 117/637 (18%), Positives = 223/637 (35%), Gaps = 124/637 (19%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKY 132 L ++ + NI ++IN+ ++ K+ K +D I + + K F+ Sbjct: 119 LVKQCMKELNISDKDINE--KEIISKIGKQKDNLITAEEYKKRNEKDFRKNR-----IAE 171 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ K + LDF+DLI T +L KK + + +I++DE QDT+ Q Sbjct: 172 VYLLYQKKLKNSNALDFDDLIFKTVELFKKHPE---VLEFYQNKFKYIMVDEYQDTNKTQ 228 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +++++ L S+ R +F VGD+ Q IY + GA+ K +L ++ + Sbjct: 229 YQLVKMLA----------SAHRNIFVVGDDDQCIYQWRGADIKNILDFEKDYPE------ 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 +++L ++RS A+IL + V + Sbjct: 273 --AKVVKLEQNYRSKANILNAANTVIKNNSQRKDKVL----------------------- 307 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + ++ + + + +Y D IA I +I + Sbjct: 308 ----RTQNENGDRIKIYRAYSDMDEGI--------FIANEIKRIIKKENR---------S 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +D +L R + + + I D IKD+ A +FI + + Sbjct: 347 YRDFAILYRTNAQSRVFEDIF----MKRDIPYRIIGGLKFYDRKEIKDITAYLKFINNLQ 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVI 485 DD+S ++ P + KI + + E I + IS Sbjct: 403 DDISLRRIINVPKRAIGAATVTKIQDFANYMDECMYSVLLDVENIPGLSKRSISSINKFT 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 I+ S + IL + ++ E I+ + E ++ + E Sbjct: 463 SLINGFNRTKDKVSVSNLIQEILESTGYMKELKDSNEIEDISRIENIKELVSAAVEFENT 522 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + SL + ++ + + +MT+H+AKGLE PVVF+V + +F Sbjct: 523 SEDKSLSAFLEKITLVSDVDNYD--EDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFPG- 579 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 S EE RL YVG+TRA ++ Sbjct: 580 ---------------------------------AQSLENFSEMEESRRLCYVGITRAKER 606 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 L + S ++ + D + + N + + + Sbjct: 607 LYMTSASTRKVFGRTVAYSESDFISEISPNLKEMVRE 643 >gi|294495717|ref|YP_003542210.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219] gi|292666716|gb|ADE36565.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219] Length = 1018 Score = 320 bits (820), Expect = 6e-85, Method: Composition-based stats. Identities = 154/1020 (15%), Positives = 331/1020 (32%), Gaps = 177/1020 (17%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCI---- 62 + E E I + VS + Y L E + + L + Sbjct: 61 AAGEMEERIENRIGESSGITVSTFHSYCNDLLKEFSLYAGINQGTRLISQEHSHVWGINN 120 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 + F + + + +++ E + D ++ Q+ + D + Sbjct: 121 IDSFGFENIAIPNRPYDLITSLL--EGVSQLHDHLVGPQELQEYVKRKLDENIDEQERDD 178 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L LA +HY+E K+ + +D++D+I LL+ +V +R +I +++L+ Sbjct: 179 LLKLADLA-RFYSHYQEYKRDHNFMDYDDMISMVCRLLESNEV---VRNQIRNRYDYVLV 234 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q +I + + L V D+ Q IY F GA + + + Sbjct: 235 DEFQDTNYAQLYLINLIAD-----------GTNLTCVADDDQCIYRFRGAYLSNIKQLQD 283 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I L ++RS++ I+ + ++ + + + S Sbjct: 284 YY--------ASLEKIPLDRNYRSSSQIVQLSQQLIATNPEREDKTLHSH---------- 325 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + ++ D + A +A I +I + Sbjct: 326 ------------------NGDGEKIKVVKTPDDTSE-------ANWVADEIQRLIEEE-- 358 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 I +I VL RKR D + + I V L ++ +++ + Sbjct: 359 -------NIAPDEIFVLTRKRADGKKYSDALK----GKMIPVEYVGNLQLKNYPIVQEAL 407 Query: 423 ALGRFILSQEDD-LSFVCMLKSPLFNFSEDDIFKICTQRHETET------------VYEY 469 A + ++ ++F +L SE D+ KI T + + Y Sbjct: 408 AYMHIVADPFNNGIAFARILA--REGVSEHDLQKINTMAKKLSRETELEGDGIYSVLQHY 465 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA--KKGRQQFISRFGNEVID 527 + + + ++ ++ELI + P D +L + Q ++ + Sbjct: 466 LDDVPIIQKALVKSILTRLNELIDYRKNHLPSDTVKYLLSEKTDLYKSQLLADTFTSRRN 525 Query: 528 --VLDEFLNFTLRNEQNSYSS-LQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGL 583 +L+ + E S + LE I ++ N V++MT+H +KG Sbjct: 526 IHILNSLTSMVEDLELVDGGSEFARAVEYLELVFNLDIGDEETSEENTVKVMTIHQSKGK 585 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E+ VVF+ D + + KK +P + K Sbjct: 586 EAKVVFVCDLADRHLPLRFTKKQFRVPRELEKGVQRDV----------------EDKILH 629 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY------------DMVYDSFHN 691 EE RL YV MTRA ++L + + K+ + + + + + Sbjct: 630 LEEERRLAYVAMTRAREKLYLTFPEKYAGNKRGVKPSEFVTQLDYESNPLIEYIETDRLQ 689 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--------------------- 730 D + +DE++ E + Sbjct: 690 DTETVVTESPLKKKQDEYLRLMNMYAGQGQMKQALESLVVLTQLKEIEDKGNLAVFNIED 749 Query: 731 ---KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQT 779 D +++ + + ++ + S + + L+ + Sbjct: 750 FLKTTPRDIEELEALVNEEMPPLVDSDMRFSASKVRQYMECPLKFKYSNVLNIPIPQKTF 809 Query: 780 FNRGLIIHKLLQVIFTLP---EHKRKNFITSYCTK--NAKLWPAKEYK-NLLLSITRLLE 833 F G +H + + + + + + ++ ++ ++ L + ++LE Sbjct: 810 FQTGTDVHSVFEQLSRYRMQGKSIDMELANRILDETWDGSVFDSQTHEQQELDRVRQMLE 869 Query: 834 NPMMTTAMSCDSYSE-VSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891 + +E ++V K N G ID+I + + + +YKT P Sbjct: 870 ---YWFEFEKSNVNETIAVEEKFNLKLDGAQFGGVIDRIDQTPEGEYIVIDYKTSK-SPL 925 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV----SEPKVFIIPQNKLNKAFAEI 947 +P QL++Y + +++ Y + L+YV + ++ + Q+++N + Sbjct: 926 SKNKMPED--VQLALYCQAVRERYGKYPVKAGLMYVNPNIRDLRLMDVNQSQINSVLDGV 983 >gi|239638038|ref|ZP_04678997.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603] gi|239596321|gb|EEQ78859.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603] Length = 730 Score = 320 bits (820), Expect = 6e-85, Method: Composition-based stats. Identities = 121/712 (16%), Positives = 224/712 (31%), Gaps = 128/712 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + + + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEQLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ + Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPEA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +I+ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLIKLLANKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEEDYP--------DAKTIFLEQNYRSTKTILNAANEVIKNNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 307 ---------------------LW-------TANTGGDKINYYEATTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D+ +L R + ++ I Sbjct: 332 VVREIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGVGPSSVEKIQTYAVQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + I LI +F + +L R Sbjct: 438 DALGEVDFIGLSKKVTQECIAFYEMIQNLIKEQEFLEISEIVEEVLVKSGYRDMLDREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTESGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE R+ YV +TRA + L I + +S + + + Sbjct: 586 DDHEMEEERRICYVAITRAEETLYITNATTRMLFGRSQSNMPSRFLKEIPED 637 >gi|171463387|ref|YP_001797500.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192925|gb|ACB43886.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 1173 Score = 320 bits (820), Expect = 6e-85, Method: Composition-based stats. Identities = 173/976 (17%), Positives = 342/976 (35%), Gaps = 99/976 (10%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE----ERFSLLSSFFL 74 W P + ++++ + + Q L A + E S + FL Sbjct: 237 AAWNAPNAL--EDLQFLARCFQNSSAKDSDLLQYLLPAIACKECAGNVMEVASHFQTTFL 294 Query: 75 TQK-----------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 T+ +K + + + + + F + + +F Sbjct: 295 TKDPKYRSNNDKALGEAKKYLEKMGESHRIDEYIAIKQHWGHTFEEYLEWQAEQNVFAIN 354 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A L++ + AH K+ V DF+DL + + L+ K + +A+++ ++D + IL+D Sbjct: 355 EAWFALSQSMMAHANSQKENMRVRDFDDLEVGVSLLMGKSEHTAYLQSRLDAKYKQILVD 414 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ +QW+++R+ + G + +F VGD KQSIY F A+P+ + + Sbjct: 415 EFQDTNPLQWQILRA----WLAGYSEGDERPKVFIVGDPKQSIYRFRRADPRLFVSAAQ- 469 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS------TTTIRH 297 + + IE + R+ +I V+ +F + + Sbjct: 470 ----FLHQHHDAAYIEQDKTRRNAPEINNAVNAIFQGEQVPPDYPYSEQQTLWVAPDVGK 525 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTIS 354 + G + L + Q + ++ + +A I Sbjct: 526 PADVYAGQGEIYLLPLIAYAEQMQEPREGSAFDGAIADSSETVGVIQRQREGELVARLIK 585 Query: 355 NMIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 +I T + R +A D L+LV++RK P R +K Y+ +G Sbjct: 586 EIIATRRVADKEGGKEVWREARASDFLLLVKRRKYLPQYERALRNVKLAYESPRLGG--- 642 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 L + L I DL+AL +++ DL +L+SP+F F+E + ++ + Sbjct: 643 -LLNTLEIDDLVALLTVLVTPRHDLPLAQVLRSPIFGFAEKQMQQLAVAMTSG-PYRSWW 700 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVI 526 + + Q +Y+ H+ + HD LI R ++ + +V+ Sbjct: 701 DALQDGKDATLQAAARYLKHWHHLGERLPVHDLLDLIYQEGDVRLKYAAVCQDLDRPQVL 760 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISE-------------------------LEQYPPTI 561 LD FL L + Y SL I E L + Sbjct: 761 ANLDAFLEVALNQDGGQYPSLSRFIQEMNTKRRGDDDETPDEGDVDAASDDNLAEVDEEG 820 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + H VR+MT+H AKGLESP V ++D + + + + + P Sbjct: 821 EMSEEDRHKRVRLMTIHGAKGLESPFVVILDANNTDTNVDYSGVLIDWVPQEESPSHLSL 880 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 + +++ + KK ++E LLYV MTRA L I + + Sbjct: 881 FTSKTL-TSPRAEINEAEKKIGEKENWNLLYVAMTRARQGLWISGDAQKPTTNNPSGLDK 939 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + ++ + +T E +E T++ + + + Sbjct: 940 TSWYGKASK-----------AELSVYQVGEQVVATEKFEVIKPAQENTVEDFVLDWDPAQ 988 Query: 742 KLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEH 799 + + + +DI + S D + +L + G HKLL+ I Sbjct: 989 ESHAQMLSDIESGVTIEVFSGEDEQAGNPDPEILEE------GTNFHKLLEFITPDSANQ 1042 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859 + + N L+ + ++L P + ++ + + I+ + Sbjct: 1043 NKPAMPSEQELMNWLGVDRGGANKLIAHVQKVLTTPELKHYLTSGEWVQAWNELDISSEQ 1102 Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 S R+D++ ++ I +YK +P+ + QL Y+ L ++ Sbjct: 1103 GK---SYRMDRLVEFDNHLAIIDYK--LTIPEVGSEKYEKYRKQLQGYQAELTRIRKDRL 1157 Query: 920 LVCLLIYVSEPKVFII 935 LI ++ + Sbjct: 1158 NKAYLISSR-GEIVEV 1172 >gi|15924895|ref|NP_372429.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927479|ref|NP_375012.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|148268378|ref|YP_001247321.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH9] gi|150394440|ref|YP_001317115.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH1] gi|156980221|ref|YP_001442480.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|253316914|ref|ZP_04840127.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006692|ref|ZP_05145293.2| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426037|ref|ZP_05602459.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428710|ref|ZP_05605105.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431320|ref|ZP_05607696.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257434038|ref|ZP_05610389.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus E1410] gi|257436942|ref|ZP_05612984.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M876] gi|257793289|ref|ZP_05642268.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781] gi|258408883|ref|ZP_05681165.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763] gi|258421013|ref|ZP_05683944.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719] gi|258422982|ref|ZP_05685881.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635] gi|258430015|ref|ZP_05688385.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299] gi|258443467|ref|ZP_05691809.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115] gi|258445325|ref|ZP_05693516.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300] gi|258447889|ref|ZP_05696023.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224] gi|258453322|ref|ZP_05701307.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937] gi|269203558|ref|YP_003282827.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ED98] gi|282894572|ref|ZP_06302800.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117] gi|282904536|ref|ZP_06312421.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C160] gi|282906309|ref|ZP_06314161.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus Btn1260] gi|282909225|ref|ZP_06317041.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911530|ref|ZP_06319330.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914703|ref|ZP_06322488.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M899] gi|282917252|ref|ZP_06325007.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus D139] gi|282919740|ref|ZP_06327472.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C427] gi|282925144|ref|ZP_06332804.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C101] gi|282928078|ref|ZP_06335685.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102] gi|283771055|ref|ZP_06343946.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp. aureus H19] gi|283958666|ref|ZP_06376112.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus A017934/97] gi|293507780|ref|ZP_06667622.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 58-424] gi|293510282|ref|ZP_06668988.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M809] gi|293539337|ref|ZP_06672016.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M1015] gi|295407286|ref|ZP_06817085.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819] gi|296275663|ref|ZP_06858170.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MR1] gi|297246189|ref|ZP_06930040.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796] gi|54038823|sp|P64319|PCRA_STAAN RecName: Full=ATP-dependent DNA helicase pcrA gi|54041649|sp|P64318|PCRA_STAAM RecName: Full=ATP-dependent DNA helicase pcrA gi|13701698|dbj|BAB42991.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|14247677|dbj|BAB58067.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|147741447|gb|ABQ49745.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH9] gi|149946892|gb|ABR52828.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH1] gi|156722356|dbj|BAF78773.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|257271180|gb|EEV03337.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274354|gb|EEV05866.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257277969|gb|EEV08625.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257280964|gb|EEV11108.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus E1410] gi|257283731|gb|EEV13856.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M876] gi|257787261|gb|EEV25601.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781] gi|257840330|gb|EEV64792.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763] gi|257842961|gb|EEV67379.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719] gi|257846769|gb|EEV70784.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635] gi|257849609|gb|EEV73577.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299] gi|257851352|gb|EEV75292.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115] gi|257855843|gb|EEV78767.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300] gi|257858821|gb|EEV81690.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224] gi|257864530|gb|EEV87273.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937] gi|262075848|gb|ACY11821.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ED98] gi|282313102|gb|EFB43500.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C101] gi|282316378|gb|EFB46755.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C427] gi|282318879|gb|EFB49234.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus D139] gi|282321417|gb|EFB51743.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M899] gi|282324539|gb|EFB54851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326793|gb|EFB57090.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330506|gb|EFB60023.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus Btn1260] gi|282590142|gb|EFB95223.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102] gi|282595092|gb|EFC00059.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C160] gi|282763059|gb|EFC03191.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117] gi|283459649|gb|EFC06740.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp. aureus H19] gi|283471176|emb|CAQ50387.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ST398] gi|283789706|gb|EFC28528.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus A017934/97] gi|285817586|gb|ADC38073.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus 04-02981] gi|290919872|gb|EFD96941.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M1015] gi|291094843|gb|EFE25111.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 58-424] gi|291466646|gb|EFF09166.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M809] gi|294967861|gb|EFG43891.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819] gi|297176896|gb|EFH36153.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796] gi|298695247|gb|ADI98469.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|302333570|gb|ADL23763.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus JKD6159] gi|312437628|gb|ADQ76699.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH60] gi|312830278|emb|CBX35120.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129285|gb|EFT85279.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus CGS03] gi|315193435|gb|EFU23832.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus CGS00] gi|329724791|gb|EGG61295.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21172] Length = 730 Score = 320 bits (820), Expect = 7e-85, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|228476304|ref|ZP_04061005.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119] gi|228269587|gb|EEK11093.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119] Length = 730 Score = 320 bits (820), Expect = 7e-85, Method: Composition-based stats. Identities = 120/718 (16%), Positives = 229/718 (31%), Gaps = 128/718 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVEHLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFVGAISNL 147 Query: 111 RDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T M ++ + + + Y+ +N LDF+DLI+ T L ++ + Sbjct: 148 KNELKTPEDAMKEANDFHSQMVATVYSGYQRQLSRNEALDFDDLIMKTIRLFERVPDA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST ILT ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKTILTAANEVIKHNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + A Sbjct: 307 ---------------------LW-------TANNGGEKIKYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D+ +L R + ++ I Sbjct: 332 VVREIIKHRKSGK----------DYNDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R + + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPSSVDKIQRYALDNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + LI +F + IL RQ Sbjct: 438 DALGEVDFIGLSKKVTQECIQFYEMVQNLIKEQEFLEISEIVEEILEKSGYRQMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+++ Q LI+ L + + V +MT+H+ Sbjct: 498 IESRSRLENIDEFMSVPKDYEKDTPLEEQSLINFLTDLSLVADIDEAQIDSGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE R+ YV +TRA + L I ++ +S + + Sbjct: 586 DDHEMEEERRICYVAITRAEEVLYITHATSRMLFGRSQANLPSRFLKEIPEELLETPA 643 >gi|49484146|ref|YP_041370.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|295428487|ref|ZP_06821114.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus EMRSA16] gi|68605635|sp|Q6GFF2|PCRA_STAAR RecName: Full=ATP-dependent DNA helicase pcrA gi|49242275|emb|CAG40982.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|295127469|gb|EFG57108.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus EMRSA16] Length = 730 Score = 320 bits (820), Expect = 7e-85, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 GDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|319399870|gb|EFV88117.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis FRI909] Length = 729 Score = 320 bits (819), Expect = 8e-85, Method: Composition-based stats. Identities = 120/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + + + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEHLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +KE LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKEVLKSENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST +IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKHNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 307 ---------------------LW-------TANSGGDKIQYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + ++ +L R + ++ I Sbjct: 332 VVKEIMKHQRGGK----------KYSEMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI + +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYALQNSISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + I LI +F + +L + Sbjct: 438 DALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKSGYKDMLDREQS 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQNGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 EE R+ YV +TRA + L I + +S + + + Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLD 640 >gi|225376675|ref|ZP_03753896.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM 16841] gi|225211558|gb|EEG93912.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM 16841] Length = 760 Score = 320 bits (819), Expect = 8e-85, Method: Composition-based stats. Identities = 114/672 (16%), Positives = 222/672 (33%), Gaps = 116/672 (17%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L + + N+ T+ ++ L + K++DE + + + + S + + Sbjct: 123 LMKDICKRLNVDTKIYKER--SLLAAISKAKDELVD--PQEFSLRAAASGDFAKRKQAEI 178 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y++A ++N LDF+DLI+ T +L K A + + +I++DE QDT+ Q+ Sbjct: 179 YREYQDALRRNNALDFDDLIVKTVELFKTD---AQVLDYYQERFRYIMVDEYQDTNTAQF 235 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E+I L + + L VGD+ QSIY F GA +L ++ + Sbjct: 236 ELISILARKY----------KNLCVVGDDDQSIYKFRGANIYNILNFEKHFPEAV----- 280 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I+L ++RST +IL + V S + + LW Sbjct: 281 ---TIKLEQNYRSTQNILNAANGVISNNMGRKRKT---------------------LW-- 314 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 ++ + + + A +A I+ + Sbjct: 315 -----TDNEEGKKIGFKQFETGYEE-------AEYVAKDINACVKDGR---------YHY 353 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 D VL R + L I IKDL+A + I + D Sbjct: 354 GDCAVLYRTNAQSRLFEEKF----IVSNIPYKIVGGVNFYARKEIKDLLAYLKTIDNARD 409 Query: 434 DLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQHVIKY 487 DL+ ++ P + ++ + Y ++ + +K + + + Sbjct: 410 DLAVRRIINVPKRGIGATTLNRVADYAAAADISFYNALKMADDIPTLGKSAAKIKPFVNF 469 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NS 543 I + + S + I+ ++ + E I+ +DE ++ + E+ Sbjct: 470 IQVMRSKVEIISVSELLQEIIDETGYVKELEAEDTEEAKARIENIDELISKVVAYEEGEE 529 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + +L + E+ + + V +MT+H+AKGLE P V+L +F Sbjct: 530 HPTLSGFLEEVALVADID--SLDEGSDYVVLMTLHSAKGLEFPKVYLAGMEDGLFPS--- 584 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + EE RL YVG+TRA ++L Sbjct: 585 ----------------------------YMSITSDSSSEDLEEERRLAYVGITRAKEELT 616 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 I ++ V + + K ++ + + T Sbjct: 617 ITCARQRMIRGETQYNKVSRFVREIPSELLDSELRKPASARESSFGKESSFPSFLQNQTT 676 Query: 724 LEREETIKQLMD 735 + T + Sbjct: 677 ARPKRTTLRQQP 688 >gi|227500430|ref|ZP_03930492.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC 35098] gi|227217493|gb|EEI82812.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC 35098] Length = 1121 Score = 320 bits (819), Expect = 8e-85, Method: Composition-based stats. Identities = 154/910 (16%), Positives = 315/910 (34%), Gaps = 115/910 (12%) Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134 T+K + + + + + + + + + +L K Sbjct: 277 TKKDSEEDYQFIKSTRDRYKEEIKTISAFIKNTDSLTISLFEGLEKEILAELNSLVKDFM 336 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 Y + K + LDF D+ DL+ + R K+ +I DE QD++ IQ Sbjct: 337 GAYAKKKSEKSYLDFSDMEHKFIDLIDIEEA----RDKLRDRFAYIFFDEYQDSNEIQNY 392 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 +I L LF VGD KQSIY F AEPK L + ++ + Sbjct: 393 IIERLRG-----------ANNLFLVGDVKQSIYGFRRAEPKIFLEKLDSYEQD-----ED 436 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314 I L +FRS DIL + +F Sbjct: 437 SIRINLNQNFRSQKDILDFDNFIFDRLM-------------------------------- 464 Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374 ++ S + + FD + + I I + ++ + Sbjct: 465 -TKESSDIDYKNAGHRLNFDKNDKSPFKRAQVKVIDQKIREEDYLVELVEEIREMGYDYR 523 Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434 DI +L+R + + + +I + + + + + + +++ + +DD Sbjct: 524 DIAILLRSGAKSYIYEEAFK----KAEIPFFNDISKVSFRAVEVTFFINILKYLANPKDD 579 Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI-QKFANCGISKFQHVIKYIHELIH 493 LS + +L+S +F F+EDD+ +I + + K + + + H Sbjct: 580 LSLLSILRSEIFGFTEDDLVEIKLNSSAFSFYKAFKEYDKDDEIGEKIKDFLTKFADFSH 639 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELIS 552 + S ++F I Q ++R E I ++ F++ ++++ + L + Sbjct: 640 MLSLLSLYEFGNYIFEETGLYQFLMARDRAEDRIGNVESFIDIMDEFDKSNDNGLFAFLD 699 Query: 553 ELEQYPPTIK------RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 ++ R S + N +RIMT+H +KGLE PVV L D+ + + + + Sbjct: 700 FVDSLSMNQTDSIASARDLSESENLLRIMTIHKSKGLEFPVVILADSSKRFNNKHLKEAI 759 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 L + + + + + + + + + ++E R+LYV MTRA + L + Sbjct: 760 VFDDDLGIGINLSDYENKLRFSSIRKNLINDKITEENKKEEMRILYVAMTRAEEMLFVTG 819 Query: 667 HSNTSNEKK-------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 N +K ++ D + D + + +K IA Sbjct: 820 ERNLKTIEKIAGRVDFLKMNSYMDWLLAILSTDAVGSGLFESFETDKLTGIASLDVIDEC 879 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI-------------------LNPS 760 ++ + I +D++ I ++++ I+ ++PY +PS Sbjct: 880 KSIDKYQTCDINDFLDDENINEEIYKRIQEIHDKPYPYLAEIKDSIKKSVTEVSKDFDPS 939 Query: 761 TID-------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807 K N + + RG IIHKL Q + K ++ Sbjct: 940 ADGYKLPNYGEELNQSDFRKPNFITEEKTFKATERGTIIHKLFQALDFKDYEK-ESLEQE 998 Query: 808 YCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865 K K L+ I +N ++ ++ K D ++ Sbjct: 999 IAELITKKKIDKATTKLIEIDKILAFYQNHLIKNL--AQKAKKIRKEESFLMQKDDYYLN 1056 Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 G+ID + + I + ++KT + + Q+ IY++ ++++ K L+ Sbjct: 1057 GQIDLMFELEDEIILVDFKTDKKKREGF------YDKQIKIYKEAVEEAQAKKVSQALIY 1110 Query: 926 YVSEPKVFII 935 + + ++ I Sbjct: 1111 WYNFKEISEI 1120 >gi|314936042|ref|ZP_07843391.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp. hominis C80] gi|313655859|gb|EFS19602.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp. hominis C80] Length = 730 Score = 320 bits (819), Expect = 8e-85, Method: Composition-based stats. Identities = 121/718 (16%), Positives = 229/718 (31%), Gaps = 128/718 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVEHLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFVGAISNL 147 Query: 111 RDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T M ++ + + + Y+ +N LDF+DLI+ T L ++ + Sbjct: 148 KNELKTPEDAMKEANDFHSQMVATVYSGYQRQLSRNEALDFDDLIMKTIRLFERVPDA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST ILT ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKTILTAANEVIKHNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + A Sbjct: 307 ---------------------LW-------TANNGGEKIKYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D+ +L R + ++ I Sbjct: 332 VVREIIKHRKSGK----------DYNDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R + + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPSSVDKIQRYALDNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + LI +F + IL RQ Sbjct: 438 DALGEVDFIGLSKKVTQECIQFYEMVQNLIKEQEFLEISEIVEEILEKSGYRQMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+++ Q LI+ L + + V +MT+H+ Sbjct: 498 IESRSRLENIDEFMSVPKDYEKDTPLEEQSLINFLTDLSLVADIDEAQIDSGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFL+ +F H IK Sbjct: 558 AKGLEFPIVFLMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE R+ YV +TRA + L I ++ +S + + Sbjct: 586 DDHEMEEERRICYVAITRAEEVLYITHATSRMLFGRSQANLPSRFLKEIPEELLETPA 643 >gi|297590041|ref|ZP_06948681.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MN8] gi|297577169|gb|EFH95883.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MN8] Length = 739 Score = 320 bits (819), Expect = 8e-85, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|323439849|gb|EGA97565.1| ATP-dependent DNA helicase [Staphylococcus aureus O11] gi|323443012|gb|EGB00633.1| ATP-dependent DNA helicase [Staphylococcus aureus O46] Length = 730 Score = 320 bits (819), Expect = 9e-85, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|146296855|ref|YP_001180626.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410431|gb|ABP67435.1| ATP-dependent DNA helicase PcrA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 714 Score = 320 bits (819), Expect = 9e-85, Method: Composition-based stats. Identities = 108/549 (19%), Positives = 192/549 (34%), Gaps = 112/549 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + K+ DF+DL+ T L K I K + +IL+DE QDT+ Sbjct: 169 EVYRLYNKLLKEYNAFDFDDLLYYTIMLFKTNPD---ILEKYQHKFKYILVDEYQDTNHA 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +I L++ R + VGD+ QSIYSF GA+ + +L + + Sbjct: 226 QFYLIYLLSQ----------KHRNICVVGDDDQSIYSFRGADVRNILEFENVFP------ 269 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST IL+ ++V N + LW Sbjct: 270 --DAKVIKLEKNYRSTKTILSAANEVIKNNRNRKPKR---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ FD + + A ++ +I N+I I Sbjct: 307 -------TDNNEGEKIYLYPAFDEVDE-------ANFVSMSIKNLIQGG----------I 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +I +L R + + + I + IKD++A R I + Sbjct: 343 KPSEIGILYRTNAQSLNFENAL----SSHSIPYKVVGSLRFYERKEIKDIIAYLRLITNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------IQKFANCGISKFQHVI 485 +D+LS ++ P + KI E +F +K I Sbjct: 399 DDNLSLFRVINVPKRGIGPSTVEKIKVLSDEYGISAYRLLKERGDFEFDRRTYAKLYDFI 458 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 + + A+ S + L+L K + +S E +++ ++ E+ Sbjct: 459 LLLESMRTEAESKSVVEVIELVLDKTKYMESLLSSKNEEDFQRAKNIEQLISAAAMFEEE 518 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 + + L + L + + ++V +MTVH AKGLE VVFL +F Sbjct: 519 NED--KSLQNFLNSITLSFEEDDGQKEDKVMLMTVHAAKGLEFEVVFLTGLEEGLFP--- 573 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 ++ + ++ EE RL YV +TRA L Sbjct: 574 ----------------------------LLRSEGEIELQNELEEERRLCYVAITRAKRFL 605 Query: 663 IICKHSNTS 671 ++ +N Sbjct: 606 VLTYANNRR 614 >gi|21283575|ref|NP_646663.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49486724|ref|YP_043945.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650656|ref|YP_186790.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus COL] gi|87160459|ref|YP_494538.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195804|ref|YP_500614.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222055|ref|YP_001332877.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus str. Newman] gi|161510128|ref|YP_001575787.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729683|ref|ZP_04863848.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451029|ref|ZP_05699065.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948] gi|282923244|ref|ZP_06330925.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765] gi|284024952|ref|ZP_06379350.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus 132] gi|294849454|ref|ZP_06790196.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754] gi|297208935|ref|ZP_06925339.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913008|ref|ZP_07130446.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH70] gi|304379093|ref|ZP_07361840.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|38604904|sp|Q8NVT1|PCRA_STAAW RecName: Full=ATP-dependent DNA helicase pcrA gi|68605626|sp|Q6G828|PCRA_STAAS RecName: Full=ATP-dependent DNA helicase pcrA gi|81694154|sp|Q5HEL7|PCRA_STAAC RecName: Full=ATP-dependent DNA helicase pcrA gi|110282982|sp|Q53727|PCRA_STAA8 RecName: Full=ATP-dependent DNA helicase pcrA gi|21205016|dbj|BAB95711.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49245167|emb|CAG43633.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284842|gb|AAW36936.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus COL] gi|87126433|gb|ABD20947.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203362|gb|ABD31172.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374855|dbj|BAF68115.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368937|gb|ABX29908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726569|gb|EES95298.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257861271|gb|EEV84083.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948] gi|269941377|emb|CBI49774.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus TW20] gi|282593155|gb|EFB98154.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765] gi|294823591|gb|EFG40018.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754] gi|296886425|gb|EFH25354.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885786|gb|EFK80993.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH70] gi|304342328|gb|EFM08220.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196225|gb|EFU26580.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus CGS01] gi|320139714|gb|EFW31583.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MRSA131] gi|320142369|gb|EFW34183.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MRSA177] gi|329314582|gb|AEB88995.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus T0131] gi|329728640|gb|EGG65070.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21189] gi|329731448|gb|EGG67811.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21193] Length = 730 Score = 320 bits (819), Expect = 9e-85, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|317127162|ref|YP_004093444.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM 2522] gi|315472110|gb|ADU28713.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM 2522] Length = 760 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 109/598 (18%), Positives = 209/598 (34%), Gaps = 116/598 (19%) Query: 107 FIKIRDRFNTYKMFKSTLA-SLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++ T K ++ T + L + Y + KKN LDF+DLI+ T L K+ Sbjct: 147 ISSAKNELKTPKDYEKTASGPYELTVLKVYEAYTKELKKNQALDFDDLIMTTIKLFKQ-- 204 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + ++++DE QDT+ Q+ +++ + + + + VGD Q Sbjct: 205 -VPEVLEYYQRRFRYVMVDEYQDTNRAQYVLVKMMAD----------RHQNICVVGDSDQ 253 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY + GA+ + +L + ++I L ++RST IL ++V N Sbjct: 254 SIYRWRGADIQNILSFENDYPN--------VNVIMLEQNYRSTKKILQAANEVIENNSNR 305 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + LW + ++ + + S Sbjct: 306 KPKK---------------------LW-------TQNDDGEKIKFY-------EADSEHD 330 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 A+ + I + +A DI +L R + ++ + I Sbjct: 331 EAQYVVGKIKEATDSGR---------YRASDISILYRTNAQSRVMEEML----VKSNIPY 377 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHET 463 D IKDL+A R + + +DD+SF ++ P + KI Sbjct: 378 TIVGGTKFYDRKEIKDLLAYLRLVANPDDDISFRRIINVPRRGIGATTLAKIDDYAARND 437 Query: 464 ETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++++ +Q+ + I+ I+ + + + + +L R+ Sbjct: 438 LSIFQALQEVRHIGLSPRFEKTLTEFIEQINGWVQMQDYLPVTELVDELLDKTGYREMLK 497 Query: 519 SRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN-HNEVR 573 + E + ++EFL T E+ + +L +++L K N ++V Sbjct: 498 NEKNLEAEARLENINEFLTVTQEFEKTSEDKTLVAFLTDLALIADIDKVDDDGNQEDQVL 557 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE P+VFL+ VF H Sbjct: 558 LMTLHSAKGLEFPLVFLIGLEEGVFPHSRSLMEEAEMEEE-------------------- 597 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 RL YVG+TRA +L I + + ++N + + + Sbjct: 598 --------------RRLAYVGITRAEQELCISRARMRTLYGRTNMNPPSRFLNEIPDD 641 >gi|73662195|ref|YP_300976.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494710|dbj|BAE18031.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 738 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 118/761 (15%), Positives = 238/761 (31%), Gaps = 128/761 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + + +TL Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAKEMKARVETLVGEQAQVLWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T L ++ Sbjct: 148 KNELKTPEDAQKEANDYHEQMVATVYKGYQRQLSRNEALDFDDLIMVTIRLFER---VPD 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLDYYQNKFQYIHVDEYQDTNKAQYTLVKLLAAKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST +IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 307 ---------------------LW-------TGNTSGDKIHYYEATTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VVREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNLPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLRRVINIPKRGIGPSSVDKIQAYAAQNDLSMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + LI +F + +L R Sbjct: 438 DALAEVDFIGLSKKVTQECISFYDVMQNLIKQQEFLEITEIVEEVLTKTGYRDMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + + + +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDDAQIEDGITLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 + +E R+ YV +TRA + L + ++ + + + + + Sbjct: 586 DEHEMQEERRICYVAITRAEETLYLTHATSRMLFGRPQSNMPSRFLREIPEDLLENESKG 645 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 + S + ++ +T P + T + Sbjct: 646 KSKSQAQATSNRFQNATKQPAKRAHSQRATATKQKQSATNW 686 >gi|260881142|ref|ZP_05893318.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544] gi|260849631|gb|EEX69638.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544] Length = 773 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 116/698 (16%), Positives = 224/698 (32%), Gaps = 139/698 (19%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78 + L V+ + + ++ + + F + FL ++ Sbjct: 43 RIANLLAQGVAPYSILAITFTNKAATEMRERVDRMIGDAAKDVWLSTFHSFCARFLRREI 102 Query: 79 TP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIKIRDRFNTYKMFKS 122 ++N + + + +KE LK+ Q+ +++ K + Sbjct: 103 EATGIYKRNFVIYDASDSQTVIKECLKEMNLDDKQFTPASVQNAISNAKNQLMGPKAMER 162 Query: 123 TLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + + Y + N LDF+DL++ + LL++ + IR K +I Sbjct: 163 DADNFHQKKIAEVYRLYANKLRNNNALDFDDLLMISVVLLEENED---IRTKYQGRFRYI 219 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ Q+++ + L L VGD QSIY + GA+ + ++ Sbjct: 220 LVDEYQDTNGAQYQLTKILAA----------RHHNLCVVGDADQSIYGWRGADIRNIMDF 269 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + ++I+L ++RST +IL + V N + Sbjct: 270 EQDYPE--------ATVIKLEQNYRSTKNILAAANAVIEHNVNRKPK------------- 308 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 +LW ++ + D + A+ I TI Sbjct: 309 --------ELW-------TENATGEKLTSYQAMDERDE-------AQFITTTI------- 339 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 DI +L R + +I I D IKD Sbjct: 340 --MKQRTIFNASYGDIAILYRTNAQSRIIEETF----MRSGIPYTMVGGLKFYDRKEIKD 393 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE----------TVYEYI 470 ++A R I + D +S + ++ P + K+ E E V + I Sbjct: 394 ILAYLRVIYNPLDTVSLMRIINVPKRGLGATTMAKLTAFAEEQELSLFDVISNPEVLDAI 453 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VID 527 + +I ++ D +L + + E I+ Sbjct: 454 PGITARVKKPLELFTTFIFNFMNTHMNMKLDDLIDRVLKESGYIDELKADKKPEHESRIE 513 Query: 528 VLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 L EF+ E++ +L+ +S+L + V +MT+H+AKGLE P Sbjct: 514 NLKEFIGVARDFEKSEENPNLETFLSQLSLVSDIDNADIE--DDRVTLMTLHSAKGLEFP 571 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +VF++ +F H + EE Sbjct: 572 IVFMIGMEEGLFPHSRTL----------------------------------MNPDEIEE 597 Query: 647 YNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWY 682 R YVG+TRA +L + + + ++ + + Sbjct: 598 ERRTCYVGITRAQRKLYLTNARQRTIYGKTQAFPPSRF 635 >gi|51473902|ref|YP_067659.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington] gi|51460214|gb|AAU04177.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington] Length = 823 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 174/603 (28%), Positives = 276/603 (45%), Gaps = 36/603 (5%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K ++++E+ KK P L +L+K + + + ++ T L Sbjct: 237 KKLFFTKDGEKRKRLLSKELTKKYPQLLIELEKITFKIHHLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHILIDE QDTS Sbjct: 297 AYIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHEWLFHKLENEINHILIDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L F ++F VGDEKQSI+ F GA + T Sbjct: 357 TTQWNIITTLITKFNA---AEKPNNSIFIVGDEKQSIFRFQGANLHNFNLINEQLKINLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + +KF I L S+RS +IL V + + + + SS G+V Sbjct: 414 STNKKFKNITLEYSYRSCPEILQFTHNVLNNIKYNYPNLFLADNPL--ISSLRIHQGSVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V + + W D +S+A +L +I I I + I + + Sbjct: 472 VWPLVTNNKQKEF-----FWILPEDDKNAKSAADLLIEKIVNFIKEKIESKKILPSTASQ 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + N K+ V +DR L ++L I DL+A +F+L Sbjct: 527 -ISEKDFMILVRKRD---KFSQNLIKELNKAKLKVEISDRINLKENLPILDLIAAAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ C+LKSP+ SE ++ + T++E + + + Sbjct: 583 LPDDDLNLACLLKSPIIGISEQKLYTLLV-NKNDHTLWEVLSTHT--------DIYNKLD 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 +I I + S DFF L++ R + GN D+++E L + +SLQ Sbjct: 634 SIIKIYKIASAEDFFDLVVNRLNLRAIY----GNNNDDMINELLTLSKDYANAIDNSLQG 689 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 I+ E IKR + +++R+MTVH +KGLE+P V L D+ + + Sbjct: 690 FIAWFENNEIYIKRDM-EHSDKIRVMTVHGSKGLEAPFVILCDSTTLPIRNNKF------ 742 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + ++ + +L + K +EY RLLYV MTRA DQLIIC SN Sbjct: 743 --IWDDNGQMFFSLNAEDTPAFLQELKESEKLKDLQEYMRLLYVAMTRAQDQLIICGFSN 800 Query: 670 TSN 672 N Sbjct: 801 KDN 803 >gi|116749176|ref|YP_845863.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB] gi|116698240|gb|ABK17428.1| DNA helicase/exodeoxyribonuclease V, subunit A [Syntrophobacter fumaroxidans MPOB] Length = 1162 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 141/983 (14%), Positives = 288/983 (29%), Gaps = 105/983 (10%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSM-------------ETGNPTILKKAQT 52 L + + + + L ++ + + S G + + Sbjct: 216 ALDRTRTEDYAARAVRELVEVELRALRGAFAGSPLGKAWGSFIEDLENRGASAGTELPRP 275 Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE----------INKKSPDLKEKLKK 102 + A+ + + + ++ LT+ P+K+ +L+ Sbjct: 276 VPGATWEELPQ--WRRIADALLTKAGAPRKSFGPASGFYSGFGKTPWCNLVRELEGDTAD 333 Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 ++ + + ++ + L + Y+E + +LDF L + L Sbjct: 334 RLHRIRELPVKEASRPDAETLFDLILLLHAIIEAYDERCRSRRLLDFSALEMAALRLF-D 392 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + ++ +D + H+L+DE QDTS QW ++R L E + G +TLF VGD Sbjct: 393 QVRPSDLQLLLDHRVRHVLVDEFQDTSRQQWRLLRHLFEGWEAGD-----AKTLFVVGDP 447 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 KQSIY+F AE K + + L +FRS ++ + +F Sbjct: 448 KQSIYAFRKAEVMLFTEAKNGLPID-EHRRLPLESLVLSTNFRSQPHLIQWANGLFGQTV 506 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 E + + + + A Sbjct: 507 MRDPRPEIDEVPFIPSVAS----------PATRPVECPEPPELALFNGWPAPAAARRREA 556 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 LAR + + R I VL+ R + K + Sbjct: 557 EWLARNV---------------WEETRESPDTRIGVLLFARTHLATYLEAFQRWK----V 597 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 V + L + +K L L R ++ DDL++ L SP DD++ + + + Sbjct: 598 PVQVAEGLKLLERPEVKYLRQLCRALVLPHDDLAWASQLHSPWLVLGFDDLYAVSLETGD 657 Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + + D + G + R+G Sbjct: 658 S---WVEKIRSFAQKDERVAGFWNGLEAARRHLGHEPLADVMEIAWLDLGGARIVSQRWG 714 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 + F E + + EL + V +MTVH AKG Sbjct: 715 GRGLACCRRFFQLIREAETHEPVETLRRLEEL-LENAYEPVDPETARSGVSVMTVHRAKG 773 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ-----SKSRNNIVSDLIK 637 LE V+L + + + G + + + S L + Sbjct: 774 LEFDSVYLPFLDWNPVVRQRSSQQPYLLERVPGSGELFLLAAHPDRLKGEPDPLFSWLAR 833 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK- 696 E RL YV +TR+ +L + + + + + + Sbjct: 834 LQADRAWGEAKRLFYVAVTRSRTRLHLSGVVPLRKSSEELIFPPKCPLAWLNEHFDFSES 893 Query: 697 --------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 W + +E + + P Sbjct: 894 PGAQGFSLPEGSEGGEVPAAWRREWSAGGDALRVLVEPAPSKPPAGAAETYEPVEIHPAA 953 Query: 749 NDINEP--YILNPSTIDTK---------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 + P I +PS++ + + + RG ++H+LL Sbjct: 954 FERERPLFRITSPSSLALPYDEEEGEEDFEPSAPWESPETLPRLRGTLVHRLLADFACGR 1013 Query: 798 EHKRKNFITSYCTKNAKLWP--AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVS 852 + I S + + +++L + R LE+P ++ + + E S+ Sbjct: 1014 KLPSIEAIRSRLGREGMDAEGAGETARSVLAEVERCLEDPWLSPCFALPPDLLFVEYSLE 1073 Query: 853 GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI-----PYTHIAQLSIY 907 + ++SG+ID + + +YKT E + QL+ Y Sbjct: 1074 ---SLHDPRELLSGKIDLAAYLDGRWRLIDYKTSRGKAGESAETLCRRELERYAPQLAAY 1130 Query: 908 EKILKDSYPNK--SLVCLLIYVS 928 ++ + + + + Sbjct: 1131 RQMWARLRGVEEGEVEIYVYLTA 1153 >gi|221140358|ref|ZP_03564851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751778|gb|ADL65955.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 730 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVVKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|291518464|emb|CBK73685.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens 16/4] Length = 801 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 117/575 (20%), Positives = 196/575 (34%), Gaps = 115/575 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y+ ++N DF+DLI+ T +LL+ + +R + + +I++DE QDT+ Sbjct: 170 ATVYREYQARLRQNNAFDFDDLIMKTVELLR---LDGDVRAYYNDKFKYIMVDEYQDTNA 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E++R LT + L VGD+ QSIY F GA+ +L ++ Sbjct: 227 AQFELVRLLTG----------GAQNLCVVGDDDQSIYKFRGADIYNILNFEQHFPA---- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST +IL + V + E + + L Sbjct: 273 ----AHVIKLEQNYRSTGNILEAANAVIANNEGRKEKA---------------------L 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + Q Q SA A IA I ++ Sbjct: 308 WTEAEDGDKIQFQ--------------QFDSAYEEASFIASNIGALVRKGE--------- 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD VL R + LI I IKD++A + + + Sbjct: 345 ADYKDCAVLYRTNAQSRLIEEKM----IYEGIPYKIVGGVNFYSRKEIKDVLAYLKTVDN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQHV 484 DD++ ++ P I K+ R YE + + +K Q Sbjct: 401 GSDDIAVQRIINIPKRGIGATTITKVSDFARENGLNFYEALLHCEDVPSIGKAATKIQGF 460 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I +L IA+ S IL + + +E I+ +DE L + E+ Sbjct: 461 TSLIEKLRKIAKEESVSALVEEILEQTDYVAELRAEGTDEAKARIENIDELLTKAVAYEK 520 Query: 542 N-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 + +L + ++ + N V +MT+H AKGLE P V++ Sbjct: 521 DARDDGEEPTLSGFLEDVALVADIDSY--EESDNYVVLMTLHGAKGLEFPRVYMAGMEDG 578 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F + + D G S EE RL YVG+T Sbjct: 579 LFPGQAA--------IFDGGGA----------------------DSELEEERRLAYVGIT 608 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 RA + L + ++ V + Sbjct: 609 RAREHLTMTAARMRMVRGETAFHKISRFVKEIPEE 643 >gi|309389840|gb|ADO77720.1| ATP-dependent DNA helicase PcrA [Halanaerobium praevalens DSM 2228] Length = 715 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 112/613 (18%), Positives = 204/613 (33%), Gaps = 127/613 (20%) Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 F L L ++ KN+ ++ + ++ ++ T + A Sbjct: 114 FDSLDQRKLVKEILKSKNLDPKKTKA---------RSVLNKISNAKNELKTPQQMTKLAA 164 Query: 126 SL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 S A + A Y++ K+N +DF+DLI T L ++ + + + +IL+D Sbjct: 165 SFFEKTAAEIYAEYQKRLKENNAMDFDDLIQQTVRLFEEFPL---VLEHYQERFKYILVD 221 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QD + Q++++ L + + R L VGD Q IY F GA+ + +L + Sbjct: 222 EYQDVNHAQYQLVNLLAKLY----------RNLCVVGDPDQGIYGFRGADIRNILNFEDD 271 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 I L ++RS A+IL V + + Sbjct: 272 YP--------DAKTIRLEQNYRSKANILKAAQAVIKNNSSRKEK---------------- 307 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 +LW Q + D + A + T + ++ Sbjct: 308 -----ELW-------TDQGEGAKIELYEAKDEKEE-------ADFVCRTAKKLTKSE--- 345 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + D+ +L R + + YKI + + IKD+MA Sbjct: 346 ------PLTYDDLAILYRTNSQSRAFEDML----MKYKIPYQIVGGVRFYERMEIKDIMA 395 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANC 476 R I + DD+SF+ ++ P + K+ +YE + Sbjct: 396 YLRLIYNPADDISFLRVINRPKRGIGAGTLAKVQKFAEANNLDLYEAALKSKENPNLSGT 455 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFL 533 + H + I +L + +L R + + + ++E Sbjct: 456 YAKRVLHFTQIIEDLRAEQDQIALARLTEKLLDKSGYRHNLEAEKTAKAESRLENIEELF 515 Query: 534 NFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 + + + +SL + E+ + + + +MT+H+AKGLE PVVFLV Sbjct: 516 SVINEYMKNSENNSLAGFLEEVTLMSDIDSMDKNQS--VLTLMTIHSAKGLEFPVVFLVG 573 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F H + ++ EE RL Y Sbjct: 574 MEEGIFPHSNS----------------------------------MFEQQGMEEERRLCY 599 Query: 653 VGMTRASDQLIIC 665 VGMTRA +L + Sbjct: 600 VGMTRAESRLFLS 612 >gi|289550376|ref|YP_003471280.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis HKU09-01] gi|289179908|gb|ADC87153.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis HKU09-01] Length = 746 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 121/720 (16%), Positives = 231/720 (32%), Gaps = 128/720 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L + Sbjct: 28 GAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNKAAKEMKQRVEQLVGEEASVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFISAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + + Y+ +N LDF+DLI+ T L ++ + Sbjct: 148 KNELKTPDDAQKEANNYHEQMIATVYSGYQRQLSRNEALDFDDLIMTTIRLFERVPDA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKMLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKSIYLEQNYRSTKTILNAANEVIKNNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIKYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + + DI +L R + ++ I Sbjct: 332 VVREVMKHQRNGK----------SYGDIAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R + + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPSSVEKIQAYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + LI +F + IL R Sbjct: 438 DALSEADFIGLSKKVTQGCIQFYDLLQNLIKEQEFLEISEIVEEILEKTGYRAMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEAQIDDGVTMMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFL+ +F H IK Sbjct: 558 AKGLEFPIVFLMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +E R+ YV +TRA +QL I + ++ +S + + + + + Sbjct: 586 DDHDMQEERRICYVAITRAEEQLYITRATSRMLFGRSQSNMPSRFLEEIPEDLLELPNLD 645 >gi|242371786|ref|ZP_04817360.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W1] gi|242350487|gb|EES42088.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W1] Length = 729 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 123/763 (16%), Positives = 240/763 (31%), Gaps = 128/763 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKQRVEQLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ + Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPDA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST +IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 307 ---------------------LW-------TANTGGDKIQYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D+ +L R + ++ I Sbjct: 332 VVREIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYAVQNQISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F D +L R Sbjct: 438 DALGEVDFIGLSKKVTQECINFYETITNLIKEQEFLEISDIVDEVLQKSGYRDMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQSGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 EE R+ YV +TRA + L I + +S + + + Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLREIPEDLLESHTGT 645 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 +I++ + + + + + ++ D+ Sbjct: 646 KRQTISQAKPQQKRGFSKRTTSPKKQVSSSDWKVGDKVTHKAW 688 >gi|91205173|ref|YP_537528.1| ATP-dependent helicase [Rickettsia bellii RML369-C] gi|157827491|ref|YP_001496555.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389] gi|91068717|gb|ABE04439.1| ATP-dependent helicase [Rickettsia bellii RML369-C] gi|157802795|gb|ABV79518.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389] Length = 809 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 292/634 (46%), Gaps = 51/634 (8%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 ++ +E L F T+ +K+++++E+ KK P L +L+K + K+ Sbjct: 221 DKIKNLFADYDLEIEPKEL---FFTKDGKKRKSLLSKELTKKHPKLLLELEKLTSQIYKL 277 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 + + ++ T LA L YE+ K++N +LD++DLI + L + + + W+ Sbjct: 278 DEEYRIEELEYHTNLLSKLAYILLEKYEKFKEENNLLDYDDLIYHAEKLFQNKAIHEWLS 337 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 +K++ EI+HIL+DE QDTS QW +I +L +F + ++F VGD+KQSIYSF Sbjct: 338 HKLESEIDHILVDEAQDTSRDQWNIISTLITEF------NRPDSSIFIVGDDKQSIYSFQ 391 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+ Q A +KF I L S+RS +IL +VF + Sbjct: 392 GADLANFNLVNEKLQTNLAKANKKFKKITLEYSYRSCGEILQFTHQVFKYIKAHYPTLFL 451 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 S + S+ G+V +W V S+ ++ W D SSA +L +I Sbjct: 452 SDNPV--ISAFRTHTGSVTVWSLVTSEKQ-----EELFWALPQDYANALSSADLLIEKIV 504 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I I + I I KD ++LVRKR + + N K+ V +D+ Sbjct: 505 SFIKEKISSKEILP-ATGNPISEKDFMILVRKRDE---FSNNLIKELNKTKLKVEASDKV 560 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 + +HL I DL+++ +F L DDL+ +LKSP+ SE ++++ T ++++E Sbjct: 561 NIKEHLPIMDLISVAKFALLPYDDLNLAALLKSPIIGISEQQLYELLT-NKNDKSLWE-- 617 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530 +S + + I + Q + +FF L ++ + D+++ Sbjct: 618 ------NLSSHPDIYNKLTSFIELYQNSTLDNFFDL----------LVNTLNLHIDDMVN 661 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E L + N +SLQ +S E IKR + +++R+MTVH +KGLE+P++ L Sbjct: 662 ELLTLSSNYANNMDNSLQSFVSWFENNDIWIKRDM-EHSDKIRVMTVHGSKGLEAPIIIL 720 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 D+ + S + D G + + + +L + K +EY RL Sbjct: 721 CDSTTLPISSNKF--------IWHDNGDMYFSASAADTPKFLQELKEAEKLKDLQEYIRL 772 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 LYV MTRA D LIIC SN+ + WY++ Sbjct: 773 LYVAMTRAKDHLIICGF---SNKSNIPENCWYEI 803 >gi|160945992|ref|ZP_02093218.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii M21/2] gi|158443723|gb|EDP20728.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii M21/2] Length = 1228 Score = 319 bits (817), Expect = 2e-84, Method: Composition-based stats. Identities = 153/1038 (14%), Positives = 309/1038 (29%), Gaps = 142/1038 (13%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 LK + + + + V+ E + K A QA Q Sbjct: 228 LKAALADCHADFDQELAVAEEKKTPSARAKAQATVAEKYEEAGTRLEKAAALFAQAEQLA 287 Query: 61 C---IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF---------- 107 + + LL+ + L + P + + + + Sbjct: 288 ATGQWDPLYDLLTPYVLGMEEAPGLKGMKKRLGGDHKAEIKTRSDEAAALFEQMTQLICC 347 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + + A + +A + K++ +L+F D LL+ + Sbjct: 348 SEAEAETDRQITLPRLRALFAAVRDFDARFTARKRERKLLEFSDFEHLALRLLRTPEGKP 407 Query: 168 WIR-YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 I Q+ +++DE QDT+ +Q + R L + LF VGD KQSI Sbjct: 408 TPLCENIRQDYAAVMVDEYQDTNALQDALYRCLAA---------PAGDNLFLVGDLKQSI 458 Query: 227 YSFHGAEPKRVLREKRINQ---------KRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 Y F AEP ++ + +++ L +FRS ++ ++ Sbjct: 459 YRFRQAEPGIFRQKLDSWPLLPGAKARPRPPEGTPGTDALLALDANFRSAPQVVAGINYF 518 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 F + R G + E D Sbjct: 519 FEQLMTPELGDTAYGDGQRLVCGAPG-----------------EYQGSVEVQFLPDDETE 561 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + A IA I+ ++ G R ++ +D VL+ R + P Sbjct: 562 TD------AGWIAERIAQLVSAGEPVREGSTTRPVRYEDCCVLLAARTEFPAYVEALTA- 614 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I V + R L I+ L+AL + I D+ + P+F F+EDD+ ++ Sbjct: 615 ---RGIPVYADARENLMLAPHIRPLIALLKVIDDPSQDIYLAAAMLGPMFGFTEDDLVRL 671 Query: 457 CTQRHE---------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501 + + + + K + ++ L +A+ Sbjct: 672 RARSRQVQAEPDKKPARISLYGALLLALEDPADDPFTEKVKDFYAHLTALRQMARSAPAE 731 Query: 502 DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP- 559 I + + G + F +F + S+L I Q Sbjct: 732 QLLEEIFASTGYLAALGVLENGARRREDARRFASFCATSGAGGISALVRAIDAAAQAGST 791 Query: 560 -TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + V IMT+H +KGL+ PVVF+ DT + + + + + + + Sbjct: 792 GQDTVPSGVHPGCVSIMTIHRSKGLQFPVVFVGDTARKFNASDIRQPVLVHRTFGAGLRL 851 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK--- 675 + + + L + + E RLLYV +TRA D+LI+ ++ K Sbjct: 852 RPENGEGAYKTAAYTALANVHARELRSEQMRLLYVALTRAQDKLILTVPMSSGKSAKPFA 911 Query: 676 ---------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI---------- 710 ++ D + + ++ + + ++ Sbjct: 912 KAAAFLAAGAGATLHQQANSFADWLRAALLVHPDGGMLRQLSGNRELLFVQTESVMAIRV 971 Query: 711 ---AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG- 766 A + S +T E ET L+++ + P P ++ ++I K Sbjct: 972 CDDAVQLSEKPDADTENEVPETDLALVEKLRQGFAWQYPAAALAQVPAKVSVTSIVHKAE 1031 Query: 767 ----KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE-------HKRKNFITSYCTKNAKL 815 + G +H L+ + + A Sbjct: 1032 QTTLERPGFLSKDGLTAAEMGTALHAFLEHADFARLAAAKAAGTLDEAIPAERDRQVAVQ 1091 Query: 816 WPAKEYKNLLLSI--TRLLENPMMTTAMSC-DSYSEVSVSGKIN---------------C 857 A E L ++ R +E+ + E+ + Sbjct: 1092 LTAPEIAEKLDAVCIRRFVESEAFAKICAAQQVLRELPFITALPAGAVLAAQGHEELPAA 1151 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 +++ G D + + ++ + +YKT + + AQL++Y ++ + Sbjct: 1152 ADAQVLVQGIADLVLVYPDHLELLDYKTDRRKAES--DFLRAYRAQLNLYAIAIEKRFAP 1209 Query: 918 KSLV-CLLIYVSEPKVFI 934 K + + + K+ Sbjct: 1210 KKVTYKGIYSFALGKLIE 1227 >gi|219856415|ref|YP_002473537.1| hypothetical protein CKR_3072 [Clostridium kluyveri NBRC 12016] gi|219570139|dbj|BAH08123.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 754 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 113/617 (18%), Positives = 210/617 (34%), Gaps = 116/617 (18%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156 KE + + + + + K + +A + Y++ K+N LDF+DLI T Sbjct: 145 KEIINRISRQKDNLISQDRFKKENEGNFRMNKIA-DVYVMYQKKLKENNALDFDDLIFKT 203 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 L K+ + ++ +I++DE QDT+ Q+E IR L + + + Sbjct: 204 VQLFKEHPD---VLEFYQRKFKYIMVDEYQDTNKSQYEFIRLLAQ----------VEKNI 250 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD+ Q IY++ GA+ + +L + +I+L ++RS A+IL + Sbjct: 251 CVVGDDDQCIYAWRGADVENILNFENDY--------INSKVIKLEQNYRSKANILKAAND 302 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 V S + + + + + + + + D Sbjct: 303 VISNNFHRKQKVL---------------------------KTANDSGDKIKLYRATTDID 335 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 R IA I ++ + +D VL RK + + + Sbjct: 336 EG--------RYIASRIKEILN--------IDKDKHYRDFAVLYRKNVQSRIFEDVF--- 376 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I D IKD++A +FI + D++S ++ P N E I KI Sbjct: 377 -MKSNIPYRIIGGLKFYDRKEIKDILAYLKFINNPLDNVSLRRIINVPKRNIGEATIQKI 435 Query: 457 C-TQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 E++Y + + + + I+ I S + IL Sbjct: 436 QSFADSMDESIYNALLDIDKSMNLTQRSINSIKKFVSLINSFIKSRDKISVSELIKEILN 495 Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAH 565 ++ + I+ L E ++ + E + +SL + ++ Sbjct: 496 TTGYLEELKHSKEPDSISRIENLKELVSAAVEFEVTSEDTSLSAFLEKVTLVSDIDNFD- 554 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 555 -NNADSVVLMTVHSAKGLEFPVVFMVGMENGIFPG------------------------- 588 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + EE RL YVG+TRA + + + K D + Sbjct: 589 ---------IQSLDNPKEMEESRRLCYVGITRAKENVYMTFADTRRVFGKMVSYKQSDFI 639 Query: 686 YDSFHNDERVKKIKLTN 702 + + + ++ Sbjct: 640 DEISDELKEYDNFRKSD 656 >gi|153956081|ref|YP_001396846.1| PcrA [Clostridium kluyveri DSM 555] gi|146348939|gb|EDK35475.1| PcrA [Clostridium kluyveri DSM 555] Length = 745 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 113/617 (18%), Positives = 210/617 (34%), Gaps = 116/617 (18%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156 KE + + + + + K + +A + Y++ K+N LDF+DLI T Sbjct: 136 KEIINRISRQKDNLISQDRFKKENEGNFRMNKIA-DVYVMYQKKLKENNALDFDDLIFKT 194 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 L K+ + ++ +I++DE QDT+ Q+E IR L + + + Sbjct: 195 VQLFKEHPD---VLEFYQRKFKYIMVDEYQDTNKSQYEFIRLLAQ----------VEKNI 241 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD+ Q IY++ GA+ + +L + +I+L ++RS A+IL + Sbjct: 242 CVVGDDDQCIYAWRGADVENILNFENDY--------INSKVIKLEQNYRSKANILKAAND 293 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 V S + + + + + + + + D Sbjct: 294 VISNNFHRKQKVL---------------------------KTANDSGDKIKLYRATTDID 326 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 R IA I ++ + +D VL RK + + + Sbjct: 327 EG--------RYIASRIKEILN--------IDKDKHYRDFAVLYRKNVQSRIFEDVF--- 367 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I D IKD++A +FI + D++S ++ P N E I KI Sbjct: 368 -MKSNIPYRIIGGLKFYDRKEIKDILAYLKFINNPLDNVSLRRIINVPKRNIGEATIQKI 426 Query: 457 C-TQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 E++Y + + + + I+ I S + IL Sbjct: 427 QSFADSMDESIYNALLDIDKSMNLTQRSINSIKKFVSLINSFIKSRDKISVSELIKEILN 486 Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAH 565 ++ + I+ L E ++ + E + +SL + ++ Sbjct: 487 TTGYLEELKHSKEPDSISRIENLKELVSAAVEFEVTSEDTSLSAFLEKVTLVSDIDNFD- 545 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 546 -NNADSVVLMTVHSAKGLEFPVVFMVGMENGIFPG------------------------- 579 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + EE RL YVG+TRA + + + K D + Sbjct: 580 ---------IQSLDNPKEMEESRRLCYVGITRAKENVYMTFADTRRVFGKMVSYKQSDFI 630 Query: 686 YDSFHNDERVKKIKLTN 702 + + + ++ Sbjct: 631 DEISDELKEYDNFRKSD 647 >gi|229917962|ref|YP_002886608.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b] gi|229469391|gb|ACQ71163.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b] Length = 738 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 118/688 (17%), Positives = 225/688 (32%), Gaps = 132/688 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + + L Sbjct: 32 GAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNKAAREMKDRIARLVGGVAEDIWIST 91 Query: 66 FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------ 116 F + L + ++ + + + +K+ LK+ + K R Sbjct: 92 FHSMCVRILRRDIDRIRYDRSFSILDASDQLTAIKQVLKELNLDPKKYEPRTLLGMISNH 151 Query: 117 ---YKMFKSTLASL------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + K A + + + YE+ K+N VLDF+DLI+ T L ++ + Sbjct: 152 KNELRTAKDAAALVGNNPYERIISDVYTAYEKKLKQNNVLDFDDLIMKTIHLFQE---AP 208 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + ++ +I +DE QDT+ Q+ +++ L + + L VGD QSIY Sbjct: 209 DVLAFYQKKFKYIHVDEYQDTNRAQYTLVKLLAQ----------AHENLCVVGDSDQSIY 258 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ +L ++ +I L ++RST IL + V + + Sbjct: 259 RWRGADIANILTFEKDYP--------SAHVILLEQNYRSTKRILEAANGVIQNNASRKEK 310 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW ++ D + A Sbjct: 311 N---------------------LW-------TENDEGEKLLLHVASDDRDE-------AF 335 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I + + K + + VL R + + + I Sbjct: 336 FIMNQMKEL----------KMEGMDYGQMAVLYRTNAQSRGLEEML----LKSNIPYKMV 381 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 + IKD++A R I + ++D+SFV ++ P I K+ + ++ Sbjct: 382 GGTKFYERKEIKDVLAYLRLIANPDEDISFVRVVNEPKRGIGAATIDKLGDFADMQGVSL 441 Query: 467 YEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + I+ A +K + + +L +A + S + +L + Sbjct: 442 MDAIRDIELSGIAPRTATKLADFRQMMMDLRQMADYLSISELVEEVLKKTGYEEMLKIEK 501 Query: 522 GNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E + L EFL+ E ++ +L +++L ++V +MT+ Sbjct: 502 TLEAESRLENLQEFLSVAQNFEKESDEQTLVAFLTDLTLVSDLDSLDEVDESHQVTLMTL 561 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVFL+ +F H Sbjct: 562 HSAKGLEFPVVFLIGMEEGLFPHSRALNDEEEMEEE------------------------ 597 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIIC 665 RL YVG+TRA +L + Sbjct: 598 ----------RRLAYVGITRAEKRLYLT 615 >gi|212638095|ref|YP_002314615.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1] gi|212559575|gb|ACJ32630.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1] Length = 726 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 121/748 (16%), Positives = 234/748 (31%), Gaps = 145/748 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + + Sbjct: 37 GAGSGKTRVLTHRIAYLMAEKGVAPWNILAITFTNKAAREMKERVERIVGKQAEDIWIST 96 Query: 66 FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106 F + L T + + K+I+ + I+ K D + L Sbjct: 97 FHSMCVRILRRDIDRIGIHANFSILDPTDQLSVLKHILKDRNIDPKKYDPRALLGAISSA 156 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + L + Y++ +N LDF+DLI+ T L ++ Sbjct: 157 KNDLVTPEKYAEQAANPYE--KLVAEVYQEYQKRLLRNHALDFDDLIMTTIQLFQR---V 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ ++ L + F + L VGD QSI Sbjct: 212 PEVLEYYQRKFQYIHVDEYQDTNRSQYLLVNMLAKRF----------QNLCVVGDSDQSI 261 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ +I L ++RST IL + V + Sbjct: 262 YRWRGADISNILSFEKDYPN--------AKVILLEQNYRSTKRILQAANAVIEHNTQRKP 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + + H + V A Sbjct: 314 KKLWTENSEGHALVYYEAMTEVD-----------------------------------EA 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + + I + KD VL R + ++ + I Sbjct: 339 QFVVGKIKEYVDAGKR---------TYKDFAVLYRTNAQSRVLEEML----LKANIPYKI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + DD+SF ++ P I KI + + Sbjct: 386 VGGLKFYDRKEIKDILAYLRLIANPNDDISFTRIINVPKRGIGASTIDKIAAYASSQGIS 445 Query: 466 VYEY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +++ + + + IH + + S + +L R Sbjct: 446 MFDALGSIEEMGISARIAAPLVQFREQIHHWSQMQHYLSVTELVEDVLDRSGYRDMLREE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANH---NEVR 573 E + +DEFL+ T EQ N SL +++L + + + + V Sbjct: 506 KTLEAHSRLENIDEFLSVTQHFEQVNEDKSLVAFLTDLALVADIDQLDNDSEGQTNDAVV 565 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE PVVFLV +F H Sbjct: 566 LMTLHSAKGLEFPVVFLVGLEEGIFPHNRSLNDEDEMEEERR------------------ 607 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMV 685 L YVG+TRA ++L + ++ + + +++ Sbjct: 608 ----------------LAYVGITRAEEKLFLTRAHMRTLFGQTHVNAPSRFIDEIPEELI 651 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYE 713 + ++ ++ ++ EW + Sbjct: 652 EYAHKRVKKSSASVRPSTASQGEWRVGD 679 >gi|194015861|ref|ZP_03054476.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061] gi|194012216|gb|EDW21783.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061] Length = 740 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 122/749 (16%), Positives = 234/749 (31%), Gaps = 132/749 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ Q + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQAILGPGADDIWIST 91 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110 F + L + I S L ++ Sbjct: 92 FHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVIKNILKERNIDPKKFDPRSILGSISSA 151 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + + T + + + Y++ KN LDF+DLI+ T L ++ Sbjct: 152 KNELIDAEEYAKTASDFYDQVVSDVYTDYQKRLLKNQSLDFDDLIMMTIRLFER---IPE 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ +++ L + F + + VGD QSIY Sbjct: 209 VLEHYQRKFQYIHVDEYQDTNRAQYMLVKLLAQRF----------QNICVVGDSDQSIYR 258 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ +I L ++RST IL + V N + + Sbjct: 259 WRGADITNILSFEKDYPSS--------EVILLEQNYRSTKRILNAANTVIQNNSNRKPKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + + Sbjct: 311 ---------------------LW-------TENDEGAKIAYYRADNEFGEG-------QF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I + + + D +L R + +I I Sbjct: 336 VAGKIHQLHQSGKR---------KLSDFAILYRTNAQSRVIEETL----LKSNIQYNIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKD++A R + + +DD+SF ++ P + KI +++ Sbjct: 383 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGIGATSVDKIAAYAEMNDLSMF 442 Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + + + I +L ++ + S + IL R+ Sbjct: 443 EALGQVDFIGLSARAANALDEFKQLIDQLTNMQDYLSVTELTEEILEKTGYREALKVEKT 502 Query: 523 NEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMT 576 E + +DEFL+ T EQN SL +++L K + + V +MT Sbjct: 503 IEAQSRLENIDEFLSVTKNFEEQNEDKSLVTFLTDLALVADIDKLDENEEEDQDAVILMT 562 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H AKGLE PVVFL+ VF H Sbjct: 563 LHAAKGLEFPVVFLMGMEEGVFPHSRSL-------------------------------- 590 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 ++ + EE RL YVG+TRA ++L + + ++N + + + Sbjct: 591 --MEDAEMEEERRLAYVGITRAEEELYLSSAKMRTLFGRTNMNLESRFIREIPADLLDNL 648 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725 K + + Sbjct: 649 NEKKETKTPFGQTRERPQRRGPVSRPQTQ 677 >gi|302874255|ref|YP_003842888.1| UvrD/REP helicase [Clostridium cellulovorans 743B] gi|307689481|ref|ZP_07631927.1| UvrD/REP helicase [Clostridium cellulovorans 743B] gi|302577112|gb|ADL51124.1| UvrD/REP helicase [Clostridium cellulovorans 743B] Length = 753 Score = 318 bits (815), Expect = 3e-84, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 194/576 (33%), Gaps = 116/576 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K+N LDF+DLI T +L +K + + ++ +I+IDE QDT+ Sbjct: 170 ADVYLLYQKKLKQNNALDFDDLIFKTVELFEKS---SEVLEFYQRKFKYIMIDEYQDTNY 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q++ + L + + VGD+ QSIY + GA+ + +L ++ K Sbjct: 227 SQYKFAKLLAA----------KEKNICVVGDDDQSIYGWRGADIRNILNFEKDYDK---- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +II+L ++RS A+IL + V + Sbjct: 273 ----ATIIKLEENYRSKANILEAANSVIKNNPHKHEKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + ++ + + D R +A I + + Sbjct: 308 ------RTTNESGDKIRIYRGSNDIDEG--------RFVAVEIERL---------KEIDS 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD +L R + + + I D IKD+MA + I + Sbjct: 345 RRYKDYSILYRTNAQSRIFEDIF----VKANIPYRIIGGLKFYDRKEIKDIMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ E + + ++ Sbjct: 401 PSDDVSLQRIINVPKRSIGDTTVNKLVDFAAFEEEPIYSILLDVDLVPGLTPRAVTSLNK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I+ I S D IL + E I+ L + ++ + E Sbjct: 461 FTSLINSFIRRKDSISVSDLIKEILNESGYLAELKDSKDVEDISRIENLKQLVSAAVEFE 520 Query: 541 QNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + SL + + + + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 RTEEDTSLAAFLEKTTLVADVDNYD--EDADTVTMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + S EE RL YVG+TRA Sbjct: 579 GSASFN----------------------------------EDSEMEESRRLCYVGITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++L + + + ++ D + + + + Sbjct: 605 EKLYMTSAESRNVFGRTVFYAPSDFLTEIKEDQKEY 640 >gi|15604569|ref|NP_221087.1| ATP-dependent nuclease subunit A (addA) [Rickettsia prowazekii str. Madrid E] gi|3861264|emb|CAA15163.1| ATP-DEPENDENT NUCLEASE SUBUNIT A (addA) [Rickettsia prowazekii] gi|292572376|gb|ADE30291.1| ATP-dependent helicase [Rickettsia prowazekii Rp22] Length = 822 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 171/634 (26%), Positives = 280/634 (44%), Gaps = 39/634 (6%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 + + + L F T+ +K ++++E+ KK P L Sbjct: 209 KRLALEQLNNIYDKVASLFTAYDLAIAPKTL---FFTKDGGKRKRLLSKELTKKYPQLLT 265 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 +L+K + + + ++ T LA Y+ K++N +LD++DLI T Sbjct: 266 ELEKITAKIHHLDELRRIEELKYHTNLLTKLAYIFLKKYDSYKEENNLLDYDDLIYYTEK 325 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 LL + W+ +K + EINHILIDE QDTS QW +I +L V + F Sbjct: 326 LLNNKTTHEWLFHKFENEINHILIDEAQDTSPTQWNIITTLITKLNV---AEKPSNSTFI 382 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD+KQSI+ F GA + T+ +KF I L S+RS +IL V Sbjct: 383 VGDDKQSIFRFQGANLHNFNLVNDQLKINLTSNNKKFKNITLEYSYRSCPEILQFTHNVL 442 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + ++ + + SS G+V +W + +Q + WT D Sbjct: 443 NNIKSNYPNLFLADNPL--ISSLRIHQGSVTVWPLLTNQKQKEF-----FWTLPEDDKNA 495 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +S+A +L +I I I + I ++ R I KD ++LVRKR + + Sbjct: 496 KSAADLLIDKIVNFIKEKIKSKGILTSTASR-ISEKDFMILVRKRD---KFSHNLIKELS 551 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 K+ V +DR L ++L I DL+A +F+L +DDL+ C+LKSP+ SE ++ + Sbjct: 552 KAKLKVEISDRINLKENLPILDLIAAAKFVLLPDDDLNLACLLKSPIIGISEQKLYTLLV 611 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + T++E +S + + + +I I + + +FF L++ R + Sbjct: 612 -KKNDHTLWE--------VLSSHKDIYHKLDSIIEIYKIATAENFFDLLVNRLNLRAIY- 661 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 G D++++ L + + +SLQ I+ E IKR + +++R+MTVH Sbjct: 662 ---GKNTDDMINDLLTLSKDYANSIDNSLQGFIAWFENNDIYIKRDM-EHSDKIRVMTVH 717 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE+P V L D + + DD G + S+ + +L + Sbjct: 718 GSKGLEAPFVILCD--------STTLPIRSNKFIWDDNGQMFFSLNSEDTPAFLQELKES 769 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 K +EY RLLYV MTRA D LIIC SN Sbjct: 770 EKLKDLQEYMRLLYVAMTRAQDHLIICGFSNKDT 803 >gi|293400338|ref|ZP_06644484.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306738|gb|EFE47981.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1081 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 160/944 (16%), Positives = 320/944 (33%), Gaps = 97/944 (10%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 + + E I + Y S++ K ++ L Q + Sbjct: 223 LAVECSRYEEGILRIQELYRYRYDSEVKKA---ALVEQKVQALPSLQETLAKRDYEGFRL 279 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 F ++ L + + K+S +L+++L + K Sbjct: 280 AFQSIAHGILPPSPDKEDKEYV-HLRKQSQELEDRLLGLLFSEQQFIKDMQALK--PYVR 336 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 + + K Y K++ V+DF+D+ ++L+ +D + + ++ I++DE Sbjct: 337 KLIEMVKDYRRSYARIKQEQAVIDFDDMEHYALEILQCKD--GQVAQRYREQFTEIMVDE 394 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QD++ +Q +++S+ + +F VGD KQSIY F A+P + Sbjct: 395 FQDSNDVQNTLVQSICRE-----------NNVFRVGDIKQSIYGFRHAKPSLM------- 436 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS-SRIG 303 + G +I L ++RS I+ + +F N G S + Sbjct: 437 RGIIEQQGIYDEVIYLSNNYRSKKMIVDFNNLLFKQLMNLDGFSCRYADADDVETGVAEQ 496 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 V + + + + + A IA I + + Sbjct: 497 LQDNVPICFHAIFHDEIKKANALILAKNDLK-----------ASYIANQILEIREKEQR- 544 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 Q KD +VLVR + + L I + + A+ +++ Sbjct: 545 --------QWKDFVVLVRGNARKENMKKVFDEL----HIPYFIDVKSGFYQSSAVSLMLS 592 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQKFANCGISK 480 R I +D++ + +L SPLF S + I + + + + + + + + Sbjct: 593 ALRAIEDPHNDIALIAILLSPLFPCSAEQIAQSKLAKRQEAQKASQQAAHKVYESSFYAY 652 Query: 481 FQH----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536 + + EL CS + + LD Sbjct: 653 LKEHPIPGFQAFEELRKECFGCSLTKTLNRLYEQNNYYA---LHTSVQEKTNLDLLFEKG 709 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDT 593 EQ + ++++EQ + + VR+M++H +KGL+ PVVFL Sbjct: 710 ATFEQQQAMGIHAFLNQIEQIKDAQTAEAIPIGSEADVVRVMSIHQSKGLQFPVVFL--W 767 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS-DLIKHLKKSTQEEYNRLLY 652 + + K + I S + +P+ R I + K EE R+LY Sbjct: 768 SNDAMTAIEFKDLCICDSELGIALKRMELPERYVRTTIPRIAMEHKKDKEELEEEMRILY 827 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V TRA Q+ I D V D ++ + + + W+ Sbjct: 828 VATTRAQQQMHIV-----------------DCVLDLEQYNKPLTTSSIYDRGGYTSWLLQ 870 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + H + ++ T+ Q + Q+ K I+ E L +T K T++ Sbjct: 871 TFLQHPNDLFTIKEVHTLWQSLPLQEPIK-PQYHIQPYHQEVETLQFATASAKKATDIAI 929 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 L + G ++HK+++ + I + ++ K L L Sbjct: 930 TLQKPKGMQYGTMMHKMIEALGNSTYED--TAIRQCAARLHITLSEQDVKRLHD----LY 983 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 EN + + Y E+ K + ++ G +D ++I + I I ++KT Sbjct: 984 ENEVFQRCLKTTCYYELPFMVK----DGEEVLHGFMDFVAIQENGITIIDFKTDAIF--S 1037 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + + + QL +Y+K + YPN + C + + ++ + Sbjct: 1038 ADELITRYREQLLLYQKAMNTLYPNSKIACYIYSLHLSEMIQVS 1081 >gi|153062|gb|AAA72091.1| helicase [Staphylococcus aureus] gi|742312|prf||2009360A helicase Length = 675 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|291539996|emb|CBL13107.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis XB6B4] Length = 755 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 114/613 (18%), Positives = 203/613 (33%), Gaps = 116/613 (18%) Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 + S L + + I T+ + + ++DE I + + S+ Sbjct: 119 YDADDSKSLMKDICKRLEIDTKIYKE--KSFLAAISSAKDELITPTELMQ--RALTSSDY 174 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + Y+EA KN LDF+DLI+ T +LL+ ++ + ++I++DE Sbjct: 175 AKRKQAEVYREYQEALHKNNALDFDDLIMKTVELLQSDPE---VKNYYQERFHYIMVDEY 231 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+E+IR L + + L VGD+ QSIY F GA +L ++ Sbjct: 232 QDTNTAQFELIRLLAGKY----------QNLCVVGDDDQSIYKFRGANIYNILNFEKHFP 281 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 I+L ++RST +IL + V + + + Sbjct: 282 --------DAKTIKLEQNYRSTQNILNAANSVIANNVGRKSKT----------------- 316 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + A IA I+ + Sbjct: 317 ----LWTANDEGKKIDFEQFNTGY--------------EEADYIARDIAGGVRNG----- 353 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 D VL R + L I +KDL+A Sbjct: 354 ----DYHYGDYAVLYRTNAQSRLFEERF----IVSNIPYKIVGGVNFYARKEVKDLLAYL 405 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-----S 479 + I + DDL+ +L P + ++ + Y+ +++ S Sbjct: 406 KTIDNARDDLAVRRILNVPKRGIGATTVNRVSDYAESYDISFYDALKRADEIPSIGKAAS 465 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 K + + I +F S D ++ ++ + +E + +DE L+ Sbjct: 466 KVKPFVNLIQVFRSKLEFISISDLLREVIEETGYVKELEAEGTDEAEARIENIDELLSKV 525 Query: 537 LRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + E++ +L + E+ + + + V +MT+H+AKGLE P V+L Sbjct: 526 VSYEESEEHPTLSGFLEEVALVADID--SLEDDSDYVVLMTLHSAKGLEFPKVYLAGMED 583 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + EE RL YVG+ Sbjct: 584 GLFPS-------------------------------YMSITSDDSSEQLEEERRLAYVGI 612 Query: 656 TRASDQLIICKHS 668 TRA +L I Sbjct: 613 TRAMKELTITCAK 625 >gi|169237545|ref|YP_001690749.1| putative helicase [Halobacterium salinarum R1] gi|167728772|emb|CAP15640.1| putative helicase [Halobacterium salinarum R1] Length = 1211 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 149/898 (16%), Positives = 295/898 (32%), Gaps = 81/898 (9%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNT------YKMFKSTLASLTLAKYLNAHYEEAKKKN 144 DLK+ + D T LA + + A Y K + Sbjct: 310 DVYDDLKDTIDAVIAAVEPHADAVETTPGELEANSAHYALALMRAFDDVLAAYTAEKDRR 369 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 LDF D+I T + L+ D + ++ ++ +++DE QDT QWE+++ LT Sbjct: 370 DTLDFPDVIETTLEFLRANDA---VTERLREQFAAVMVDEFQDTDPRQWELVKLLTGV-- 424 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK---------F 255 + +F VGDEKQSIY F GA+ +R Q G Sbjct: 425 ----DEGTASNVFLVGDEKQSIYGFRGADVTTFGNARRELQTVNEARGVDDVPDGEAESP 480 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR-----IGQVGTVQL 310 + +EL +FR+ + L+ ++++F +G + + + G Sbjct: 481 TALELSGNFRTLDEPLSFLNELFEYLLQPEGDTHEPYEAPPQELTTQRDRIEDIEGLTGS 540 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG---TDTIFSNGK 367 E + D+ + + + A+ +A ++++ G Sbjct: 541 VEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALAARLTHLFDDPPQVQDPDTGV 600 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R D +L+R+R Y I D ++ L L R Sbjct: 601 HREATPDDTAILLRRRTHLDRYQRALEE----YDIPYTVVGGVGFYDTPEVQALTNLLRV 656 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 + EDD+S +L+SPLF F++D + E ++V++ A + Sbjct: 657 LGDPEDDVSLYGVLRSPLFGFADDRLAP---AVAEADSVWDA---LAETDDPQLADAFDL 710 Query: 488 IHELIHIAQFCSPHD--------FFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLR 538 + ++ +P + + ++ G + I +++F + Sbjct: 711 LSTWRTLSGCAAPSENGVLPWNRLLSRVIDDTGYLASVSADERGRQAIANVEKFRDQVRT 770 Query: 539 NEQNSYSSLQELISELEQYPP----TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 +N + L+ +++ + + VRIMT+H+AKGLE P+V + D G Sbjct: 771 WSENGVHTAAGLLHRIDRQAEIDPREGEADIPGDAEGVRIMTIHSAKGLEFPIVTVPDLG 830 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN---------IVSDLIKHLKKSTQE 645 S + + + + ++ P + + + + Sbjct: 831 SDLNFGRSVDDHGYVRLVDGTDDAPPVPAVGGPDPGDAFSIEKTAVHEYADRQSRPQERA 890 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-----------QRTWYDMVYDSFHNDER 694 E RLLYV TR D L++C + ++ W D V + + Sbjct: 891 ESKRLLYVACTRTRDHLLLCGTHDIDVDESGAIELGEPAAFDDADRWRDWVQPALLDGAL 950 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP-KKLFSPIKNDINE 753 V + + A P ++ E IP +P K Sbjct: 951 VAEAIRDGQARGEMDEASYTVRRPPRPVDWHTDDDAVDPALEISIPSPPSLAPAKRIAAT 1010 Query: 754 PYILNPSTIDTKGKT-NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812 + + T G + + + G ++H++ ++ P + I Sbjct: 1011 TLVNAVADASTDGHSYSQREESAGLSPTTFGTVVHRINELRP--PRDEWSTLIHRLSRMT 1068 Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872 ++ + + + + + S EV + + I+G ID++ Sbjct: 1069 GEVPTEADVREAVDHAADAV--EFVDHIESGSQLQEVHDEYSVVARIDESRIAGYIDRLL 1126 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 + I +YKT+ + + + Q+ Y L + + L + E Sbjct: 1127 VMPDAFHIIDYKTNDLSATTSDELADHYRPQMLAYALALLQHDQTRDVRASLRFTDEG 1184 >gi|325479866|gb|EGC82951.1| putative ATP-dependent nuclease subunit A [Anaerococcus prevotii ACS-065-V-Col13] Length = 1121 Score = 318 bits (813), Expect = 4e-84, Method: Composition-based stats. Identities = 149/937 (15%), Positives = 319/937 (34%), Gaps = 124/937 (13%) Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKN-----IITQEINKKSPDLKEKLKKSQDEFIK 109 + + + +K+ + + +++ K Sbjct: 252 DLLIEKDWDRFIKNIQKISFGAIRKSKKDNIEDYDFIKNTRDNYKNSLKEMGKFVKNTDS 311 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + K F+ L K Y+ K++ LDF D+ DL+ + Sbjct: 312 VTIEIFVKKEFEILSEINKLVKDFITTYQALKEEKSYLDFSDMEHKFIDLIDIDEA---- 367 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R K+ ++I DE QD++ IQ +I +L + LF VGD KQSIY F Sbjct: 368 REKLRSSFDYIFFDEYQDSNEIQNYIIEALKGED-----------NLFFVGDVKQSIYGF 416 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 AEP+ L + + + I L +FRS DIL + +F + Sbjct: 417 RRAEPRLFLEKLETYDESNNSL-----RINLNKNFRSEKDILDFDNFIFDRLMTKESSDI 471 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 D + G +L ++ +++ + + Sbjct: 472 DY------------KNGGHRLNPAKDTKTENKKV-----------HVNVIDQDIAEEDYL 508 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I ++ KDI +L+R + L + +I + Sbjct: 509 VDLIEEIVSDG----------YDYKDIAILLRSGTKSYLYEEAFK----KAEIPFFNDIS 554 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + + + + + +++++ +DDL+ + +L+S +FNFSEDD+ KI V + Sbjct: 555 KVSFGAVEVSFFINMLKYLVNPKDDLTLLSILRSEIFNFSEDDLVKIRLASDSYSFVKAF 614 Query: 470 I-QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVID 527 + ++K +L HI+ + ++F + + ++R E I Sbjct: 615 ESYDNDDELVAKINDFNTIFTDLSHISSLVNLYEFGNYLFEKTGFYKFLLARDRAEERIA 674 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAK 581 ++ F++ ++++ + L IS ++ R S N N VRIMT+H +K Sbjct: 675 NVEGFIDLMEDYDRSNDNGLYGFISYVDKLSKYRSDDMKTSRDLSENENLVRIMTIHKSK 734 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVV L + + + + + L + + + + + + ++ + + Sbjct: 735 GLEFPVVILAEASKRFSNQDLKQAIVFDDDLGIGINLSDYDNKLRFPSIKKNLILDRITE 794 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------RTWYDMVYDSFHNDER 694 + ++E R+LYV MTRA ++L I + N K + + D + D+ Sbjct: 795 NNKKEEMRVLYVAMTRAEERLYITGNRNLKTINKLDLRRDFLKMSNYLDWILAILSTDKV 854 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--------EQKIPKKLFSP 746 + + + + + I + ++ K + Sbjct: 855 SEDLFDNYETDLLGDFSEINIITEASSIDKYENTDISEFLEDDYVNSEVYIKFKEIFDKA 914 Query: 747 IKNDINEPYILNPSTIDTKGKTNLESL-------LSDNQTFNR----------------- 782 + + S + + SD + Sbjct: 915 YPYTEDTNESIKKSVTEISKDFDPSMDGYSLPTYESDLIATDFKKPNFIEDVKVYKPVDK 974 Query: 783 GLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840 G IIHK Q + E++ + + K + + +P + Sbjct: 975 GTIIHKAFQALEFKDYDENEISKSLDKLIAERKIDKDTKNIVEI-EKLLAFFNDPYIKKM 1033 Query: 841 M--SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 + + E S +I D ++G+ID + ++ + ++KT + Sbjct: 1034 SKEAKNIRKEESFLMEI----DDYYVNGQIDLLFEMDNDLVLIDFKTDRKKRDGL----- 1084 Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + Q++IY++ ++++ K ++ + + + I Sbjct: 1085 -YDRQIAIYKEAIEEALGKKVKKSMIYWYNFKEFSEI 1120 >gi|187776812|ref|ZP_02993285.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC 15579] gi|187775471|gb|EDU39273.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC 15579] Length = 738 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 106/575 (18%), Positives = 196/575 (34%), Gaps = 116/575 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K N LDF+DLI T +L K + ++ +I++DE QDT+ Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTNKEA---LEFYQRKFKYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E+++ L S R + VGD+ Q IY + GA+ +L ++ Sbjct: 227 SQYELVKLLA----------SVHRNICVVGDDDQCIYEWRGADISNILNFEKDY------ 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ +I+L ++RS +IL ++V + Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++ + + + +Y D A+ +A + +I Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEMKKIIKDSDK-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + + + I D IKDLMA + I + Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD+S ++ P + + + K+ +E + + I + I+ + Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + ++ I S IL ++ S + ++ L E ++ E Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKSSKNPDDVSRVENLKELVSAAADFE 520 Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++ SL + ++ N + V +MTVH+AKGLE PVVF+V + +F Sbjct: 521 KESEDKSLGMFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 EE RL YV +TRA Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 +QL I ++ D V + + + Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639 >gi|317497585|ref|ZP_07955903.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 5_1_63FAA] gi|316895144|gb|EFV17308.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 5_1_63FAA] Length = 733 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 102/571 (17%), Positives = 183/571 (32%), Gaps = 114/571 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K N LDF+DLI T +L + + + +I++DE QDT+ Sbjct: 169 AQIYKEYQKQLKANNALDFDDLIFKTVELFQFHPE---VLDYYQERFRYIMVDEYQDTNT 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ++++ L + + L VGD+ QSIY F GA K +L + + + Sbjct: 226 IQFQLVSMLARKY----------QNLCVVGDDDQSIYKFRGANVKNILNFENVFPEAV-- 273 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I+L ++RST +IL ++V + + L Sbjct: 274 ------TIKLEQNYRSTKNILNAANEVIKHNKGRKTKK---------------------L 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + Y + AR+I + I ++ Sbjct: 307 W-------TENEEGDLIEFHQYGTEYEE-------ARKIIHEIEDLSKEG---------- 342 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 K++ +L R + + I +KD+++ + + + Sbjct: 343 YDYKNMAILYRTNAQSRVFEESF----MIKNIPYRIVGGTNFYQRKEVKDILSYLKVVDN 398 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKFQHV 484 DDL+ ++ P I KI + + + K Sbjct: 399 GLDDLAVRRIINVPRRGIGAATIEKINVYAVEHNISFLDACFSADSIDTLGNAKKKINGF 458 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 I E Q S + F I + E + ++E LN + EQ Sbjct: 459 ADLIREFRRKMQEGSLEELFKYITDETGYIANLKAEETEEAEGRIENINELLNKVVTYEQ 518 Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 +SL EL+ E+ + N V +MT+H+AKGLE P VF+ +F Sbjct: 519 EAEEASLSELLEEIALVADIDN--LEDSDNRVVLMTLHSAKGLEFPYVFICGMEDGIFPS 576 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + ++ RL YVG+TRA Sbjct: 577 YMTVMSEDDDDMEEE--------------------------------RRLCYVGITRAKK 604 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 +L + + ++ + + Sbjct: 605 KLYLSAAKRRMMQGRTQFNKVSRFIDEIPEQ 635 >gi|259502070|ref|ZP_05744972.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041] gi|259169983|gb|EEW54478.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041] Length = 1386 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 146/1083 (13%), Positives = 310/1083 (28%), Gaps = 184/1083 (16%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSME----TGNPTILKKAQTLQQASQTQCIEERFS 67 E L ++ + ++ L++ ++ + Sbjct: 329 DKETALARLDQFSARFQELRDRAAAAQLDGKTLASLDKDLQQFAQARRLLVPDTWNAVRA 388 Query: 68 LLSSF-FLTQKFTPQKNIITQ-------EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 ++ F T P+ + + + ++ S + + + + +++ Sbjct: 389 IIRGAKFRTMAGKPKGDPVAAEVYATLTASRQALKKQLTGIQDSYFAYDEDQFQEISHQS 448 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY---KIDQE 176 + + Y++AK VL+F DL +L + + + Sbjct: 449 QRLLTKLSKVTVAFRRAYQQAKLSRHVLEFSDLEHYAYQILTPPADQPDWQELVANLQRH 508 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 I++DE QDT+ +Q ++ LT + LF VGD KQSIY F A+P Sbjct: 509 YQEIMVDEYQDTNRLQEAILTRLT---------NPDQHNLFMVGDVKQSIYRFRQADPSL 559 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTT 294 L + + Q+ G I L +FRS +++ + +F+ A + D Sbjct: 560 FLHKYQRYQQ----PGAGDEAIVLGENFRSMSNVTDFTNLLFAQLMGADVGEIEYDQAAH 615 Query: 295 IRHRSSR----IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 +++ ++ Q ++ + + + ++ + + + Sbjct: 616 LKYAATYYETADNQPQPTEVMLYDANADQAAIKESPDQH--------EDDKLAGELKMVG 667 Query: 351 YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I M+ + + + R + DI++L R + I + +I + + Sbjct: 668 MRIKQMVANEERIFDPATKQLRPVNYGDIVLLERTKS----INNTLMEEFSKLEIPLTVH 723 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 D ++ +MAL R I + D+ V +L+SPL + S ++ I Q + Sbjct: 724 DVESYFQATEVRVMMALLRLIDNPHQDIPLVAVLRSPLVSLSTKELAFIRLQNRTADYYG 783 Query: 468 ---------------------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 + K H + + AQ S Sbjct: 784 ALQSFKSNYANADRHLIKPELLNATATDDQPDPVAALYDKVSHFLDQLATFRQTAQQQSL 843 Query: 501 HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 D I G + L F EQ+S+ L + I +E+ Sbjct: 844 VDLIWQIYNETGYLDYVGAMPGGAQRQANLHAFYQRAHDYEQSSFKGLYQFIRFIEKMQE 903 Query: 560 TIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 K A N V +MT+H +KGL+ P+VFL+D + + Sbjct: 904 HDKDLGVAPTQLVKNTVNVMTIHGSKGLQFPIVFLIDATHGFNQQATRETAVVDAVNKVG 963 Query: 616 PGIPIWIPQSKSRN---NIVSDLIKHLKKSTQE--------------------EYNRLLY 652 I++ + + + E NR Sbjct: 964 IEYTDQEHVRYDTPQRQAIINAVQQGERAEDLRVLYVALTRAEQRLVITGSFNEENRRQN 1023 Query: 653 VGMTRAS-DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK-------------- 697 + A + + + R++ D + + + Sbjct: 1024 LASAWARWQKAFQSPAILLGPQLRVTARSFMDWIGLALARSAAFRAKQVAPARMELDESA 1083 Query: 698 --------------IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 S + + P+ ++T + +I + L Sbjct: 1084 MADYQHYQSLFTGQRFTVASYTAADVAQQLAGLQAQQAAPVVTDQTAIDQQELARIKQLL 1143 Query: 744 FSPIKNDINEPYILNPSTID-----------------------------------TKGKT 768 + + S D Sbjct: 1144 GARYPYPVATKTTAYQSVTDVKRLFEYPDNAVEAQWDYEQQQREKQAQGIYFNQHFAEPA 1203 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK---NAKLWPAKEYKNLL 825 ++ G H + Q + + + + L PA K + Sbjct: 1204 FIKQADEQPAATTIGTATHLVFQKLPLTAGPVTPASVQAEVQRLVDQGLLTPAVAAKINV 1263 Query: 826 LSITRLLENPMMTTAMSC--DSYSEVSVSGKINCPK----------KDIIISGRIDQISI 873 + + + ++ + E + +N + + +++ G ID Sbjct: 1264 TGVAGFFQTAVGQQILAAPEHYHREEPFAMVMNGAELFKEIKTSNNEQVLLHGIIDGYLE 1323 Query: 874 SQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 + I + +YKT H P + I + QL++Y++ L P + L V + Sbjct: 1324 TPTGIILVDYKTDHLRPGFGVAEIVARYRGQLNLYQEALSLMKPLPVVQKGLYLVESEQF 1383 Query: 933 FII 935 I Sbjct: 1384 ITI 1386 >gi|170017499|ref|YP_001728418.1| ATP-dependent exoDNAse beta subunit [Leuconostoc citreum KM20] gi|251764532|sp|B1MZM2|ADDA_LEUCK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169804356|gb|ACA82974.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Leuconostoc citreum KM20] Length = 1236 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 146/926 (15%), Positives = 286/926 (30%), Gaps = 134/926 (14%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ + + +TL + + + AK+ ++DF DL ++L + Sbjct: 339 QYVEKQATELVNTLVTLTQACQSAFTTAKRDAQLVDFPDLGALALEILNDDMTRKTV--- 395 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + IL+DE QD + +Q ++ + S+ ++ VGD KQSIY F A Sbjct: 396 -SGQFQEILVDEYQDINQLQETLLTKV-----------SNGHNMYMVGDVKQSIYGFRQA 443 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 EP R+ R S IEL +FRS ++ V + +F+ + + T Sbjct: 444 EPTLFARKYRQF----ALPDNPDSRIELADNFRSQNNVTRVTNLIFTQLMDEKLGDIAYT 499 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + + V + ++ D + ++A Sbjct: 500 GEAKLVP-KANYPTDVTPVFNMTIIKQPNVTTSED-----EDESQEFEKRQAQYAQLANQ 553 Query: 353 ISNMIGT---DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I ++ T D R +Q DI +L R + + R I + Sbjct: 554 ILSLRDTTIFDRKAEPAGMRPVQYGDIAILTRSKTGYIDLVATLR----QAGIPTQVDSV 609 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + + ++ + R I + D+ +L+SP+F +SE+D+ + + + Sbjct: 610 GNYFQTMEVYLMLDVLRVIDNPHQDIPLAAILRSPMFGYSENDLAAVRLADKKHDYWSA- 668 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDV 528 + Q VI I + +A I G + Sbjct: 669 -LTVFAQADQRSQTVIDLIKKWHQLAIQNDLVALIWAIFDDTSWLDYVAGMPGGAQRQAN 727 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLE 584 L ++ ++N+++ L I +EQ + AN VRIMT+H +KGLE Sbjct: 728 LHALYDYARTYQENTHAGLFRFIRYIEQLQENDGQLGEAPQEANEQAVRIMTIHASKGLE 787 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 P+VFL + + KM I + + + LK+ + Sbjct: 788 FPIVFLPEFDKSFNTQDLSGKMLIQKNAGIGLEYLQPEALVAMPTLKKLTVQQALKRQSW 847 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEK------------------------------ 674 E RLLYV +TRA Q+ + + Sbjct: 848 SEEMRLLYVALTRAEQQIYVVGTVKLDENEENQRLIALWQRAKETSGQFLAEDLRLSAKS 907 Query: 675 ----------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN--- 721 ++ + D + L + I+ + P+ Sbjct: 908 YFDWLLISLARTKNDDLESWLGDGHLPHVLGPETTLDSQISVRFINESDVVIPEPQGNET 967 Query: 722 -TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL------ 774 + K P + + S + + + L Sbjct: 968 KEITRASTYQAEDFARAKAILDYQYPFQQATRTAAYQSVSEMKRLFEDPDRANLKTLNVL 1027 Query: 775 --------------------------SDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFIT 806 + G H +LQ++ + H+ + Sbjct: 1028 ENGQLQPANELVSDKLVLPTFMTDGSQKPSSAAVGTATHLMLQLLDFKQIQTHQSLTALR 1087 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT--AMSCDSYSEVSVSGKINC------- 857 +L + I L+ P + E + + + Sbjct: 1088 DDLVTQGRLTAPVAALIDIDQILNFLQTPFAQRLCLHADSLRREATFAMIMPANQIYEHV 1147 Query: 858 -PKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKI 910 + +++ G ID I ++ I +F+YKT +E + + QL++Y++ Sbjct: 1148 HDQASVLVHGIIDGYFIDKKTKSITLFDYKTDFVRHGRVEEDISKMMVRYRGQLTLYKQA 1207 Query: 911 LKDSYPNKSL-VCLLIYVSEPKVFII 935 L +P+ + LI ++ +V I Sbjct: 1208 LMQEFPDYTFYEPQLIILNVGRVIPI 1233 >gi|228963386|ref|ZP_04124547.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228796280|gb|EEM43727.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar sotto str. T04001] Length = 584 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 107/549 (19%), Positives = 192/549 (34%), Gaps = 114/549 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L + Y++ KN LDF+DLI+ T L ++ + ++ +I +DE QD Sbjct: 7 KLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---VPEVLEFYQRKFQYIHVDEYQD 63 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L F + L VGD QSIY + GA+ +L ++ + Sbjct: 64 TNKAQYLLVKHLAARF----------KNLCVVGDSDQSIYRWRGADISNILSFEKDYEN- 112 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RS+ +IL + V N + Sbjct: 113 -------AQVILLEQNYRSSQNILNAANAVIEKNTNRKPKK------------------- 146 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S+ + A +A I + + Sbjct: 147 --LW-------TDNQVGSKISYYRAATEKDE-------AYFVAKKIRDDLQMGKR----- 185 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D VL R + ++ + I D IKD++A R Sbjct: 186 ----KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKIVGGTKFYDRKEIKDILAYLRL 237 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFAN-----CGISKF 481 I + +D++SF ++ P I K I ++ + + Sbjct: 238 IGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGISLTAVFDEIEHVGVSAKITKAV 297 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + +H +++ ++ S + ++ R + E + LDEFL+ T Sbjct: 298 KEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNERSLEAEGRLENLDEFLSVTQT 357 Query: 539 NE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E Q+ SL +++L + EV +MT+H+AKGLE PVVF+V Sbjct: 358 FESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILMTMHSAKGLEFPVVFIVGLEEG 417 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H +++ +E RL YVG+T Sbjct: 418 IFPHTRSL----------------------------------MEEDEMQEERRLAYVGIT 443 Query: 657 RASDQLIIC 665 RA ++L + Sbjct: 444 RAEEELYLS 452 >gi|157691415|ref|YP_001485877.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] gi|157680173|gb|ABV61317.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] Length = 740 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 121/749 (16%), Positives = 234/749 (31%), Gaps = 132/749 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ Q + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQAILGPGADDIWIST 91 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110 F + L + I S L ++ Sbjct: 92 FHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVIKNILKERNIDPKKFDPRSILGSISSA 151 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + + T + + Y++ KN LDF+DLI+ T L ++ Sbjct: 152 KNELIDAEEYAKTAGDFYDQVVSDVYTDYQKRLLKNQSLDFDDLIMMTIRLFER---IPE 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ +++ L + F + + VGD QSIY Sbjct: 209 VLEHYQRKFQYIHVDEYQDTNRAQYMLVKLLAQRF----------QNICVVGDSDQSIYR 258 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ +I L ++RST IL + V N + + Sbjct: 259 WRGADITNILSFEKDYPSS--------EVILLEQNYRSTKRILNAANTVIQNNSNRKPKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + + Sbjct: 311 ---------------------LW-------TENDEGAKIAYYRADNEFGEG-------QF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I + + + D +L R + +I I Sbjct: 336 VAGKIHQLHQSGKR---------KLSDFAILYRTNAQSRVIEETL----LKSNIQYNIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKD++A R + + +DD+SF ++ P + KI +++ Sbjct: 383 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGIGATSVDKIAAYAEMNDLSMF 442 Query: 468 EYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + + + + I ++ ++ + S + IL R+ Sbjct: 443 EALAQVDFIGLSARAANALDEFKQLIDQMTNMQDYLSVTELTEEILEKTGYREALKVEKT 502 Query: 523 NEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMT 576 E + +DEFL+ T EQN SL +++L K + + V +MT Sbjct: 503 IEAQSRLENIDEFLSVTKNFEEQNEDKSLVTFLTDLALVADIDKLDENEEEDQDAVILMT 562 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H AKGLE PVVFL+ VF H Sbjct: 563 LHAAKGLEFPVVFLMGMEEGVFPHSRSL-------------------------------- 590 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 ++ + EE RL YVG+TRA ++L + + ++N + + + Sbjct: 591 --MEDAEMEEERRLAYVGITRAEEELYLSSAKMRTLFGRTNMNLESRFIREIPADLLDNL 648 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725 K + + Sbjct: 649 NEKKETKTPFGQTRERPQRRGPVSRPQTQ 677 >gi|224476962|ref|YP_002634568.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421569|emb|CAL28383.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 731 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 117/712 (16%), Positives = 234/712 (32%), Gaps = 127/712 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKGVSPYNVLAITFTNKAAREMKERVEKLVGEEAQAIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK+ + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKRENIDPKRYEPRMFIGAISNL 147 Query: 111 RDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + ++T + + Y+ +N LDF+DLI+ T L ++ Sbjct: 148 KNELKTPEDAVAEATDFMSDMVARVYEGYQRQLSRNAALDFDDLIMTTITLFER---VPD 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L + F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNRAQYTLVQLLAKKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPN--------AKTIFLEQNYRSTKVILNAANEVIKNNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ ++ + A+ Sbjct: 307 ---------------------LW-------TANNEGKKINYYEAVTEKDE-------AQY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D+ +L R + ++ I Sbjct: 332 VVKEIMRQQRENNK---------SFNDMAILYRTNAQSRVLEETF----MKANIPYTMVG 378 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R + + DD+S ++ P + KI + +++ Sbjct: 379 GHKFYDRKEIKDLLSYLRLVANSNDDISLQRIINVPKRGIGPTSVEKIQNYAQQNDISMF 438 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK I LI +F + IL ++ Sbjct: 439 DALAEADFIGLSKKVVKEALVFYNLISNLIKEQEFLEITEIVEEILEKSGYKEMLERDQS 498 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ ++EF++ + E+N Q LI+ L + N V +MT+H+ Sbjct: 499 LESRSRLENIEEFMSVPMDYEKNIPLEEQSLINFLTDLSLVADIDEADIENGVTLMTMHS 558 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 559 AKGLEFPIVFIMGMEESIFPHIRS--------------------------------IKSD 586 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + EE R+ YV +TRA ++L + ++ + + + + + Sbjct: 587 DEHEMEEERRICYVAITRAEEELYLTHATSRTLFGRIQSNAESRFLKEIPED 638 >gi|160942246|ref|ZP_02089555.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC BAA-613] gi|158434803|gb|EDP12570.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC BAA-613] Length = 780 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 120/697 (17%), Positives = 232/697 (33%), Gaps = 145/697 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ L Sbjct: 27 GAGSGKTRVLTHRVAYLIEEKQVNPWNILAITFTNKAAGEMRERVDQLVGFGAESIWVST 86 Query: 66 FSL--------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEK-----LKKS 103 F ++ F QK ++ + ++ + KE+ + + Sbjct: 87 FHSTCVRILRRHIEYLGYTTNFSIYDSDDQKTLMKQVFKAMDVDTKQFKERSVLGTISSA 146 Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 +D+ + + Y++ KKN LDF+DLI+ T +L + Sbjct: 147 KDKLTGPEEFLLNAGQDFRQRRI----GEIYKEYQKRLKKNNALDFDDLIVKTVELFQNN 202 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + + +I++DE QDT+L Q++++ L + R L VGD+ Sbjct: 203 ---SEVLNYYQERFKYIMVDEYQDTNLAQFKLVSLLASKY----------RNLCVVGDDD 249 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F GA+ +L + + +I+L ++RST +IL + V Sbjct: 250 QSIYRFRGADIGNILSFEEMFP--------GAKVIKLEQNYRSTQNILNAANGVIRHNRG 301 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + + LW + + + + + Sbjct: 302 RKDKT---------------------LW-------TANGEGDLIRFKQFDTAREE----- 328 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 A +A I + ++ VL R + L+ Y + Sbjct: 329 --ADFVAREIRD-------------SGYAYQEQAVLYRTNAQSRLLEER----CIFYNVP 369 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462 IKD++A + I + DDLS + ++ P + K+ Sbjct: 370 YRLVGGVNFYQRKEIKDILAYLKTIANGVDDLSVLRIINVPKRGIGATTMGKVTIFASEH 429 Query: 463 TETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQ 515 ++Y+ +++ K I + AQ + D I+ +Q Sbjct: 430 GMSLYDALREARQIPGLGKAAEKIGAFIGQMESFRARAQSDDYTIQDLIEGIMDETGYQQ 489 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ ++E +N + E+ + + SL E + ++ + N Sbjct: 490 ELEAEGEVESQTRLENIEELVNKAVSYEEDSEHPSLDEFLEQVALVADIDNMD--ESENR 547 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H+AKGLE P V+LV +F Sbjct: 548 VTLMTLHSAKGLEFPKVYLVGLEDGLFPSMMS---------------------------- 579 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 I K+ EE RL YVG+TRA ++L+I Sbjct: 580 ----INSDDKTDMEEERRLCYVGITRAKNELVITSAR 612 >gi|167461916|ref|ZP_02327005.1| PcrA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382982|ref|ZP_08056812.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153005|gb|EFX45465.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 776 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 117/714 (16%), Positives = 227/714 (31%), Gaps = 132/714 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + + + + + L + Sbjct: 34 GAGSGKTRVLTHRIAYLIASRKAAPWSILAITFTNKAAREMQDRVGKLAGPAAEDIWVST 93 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110 F + L + + I S L + K Q Sbjct: 94 FHSMCVRILRKDISRLGFTSNFSILDSSDQLSVIKTCMKELNIDTKKFEPKAIQAAIGTA 153 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + T + + A Y++ K+N LDF+DLI+ T +L K+ Sbjct: 154 KNELVTPARYDERTGDYFKGIVSKVYALYQKKLKQNNSLDFDDLIMTTIELFKE---VPE 210 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ + + + + + + VGD QSIY Sbjct: 211 VLDFYQNKFQYIHVDEYQDTNRAQYMLCQMIAD----------KHKNICVVGDSDQSIYR 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ I L ++RST++IL ++V S + + Sbjct: 261 WRGADITNILNFEQDYP--------DAVTIMLEQNYRSTSNILNAANQVISNNSGRKPKN 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW D + + + + + + Sbjct: 313 ---------------------LW------TDKGEDSKIKLYNADSEHEEGY--------F 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 IA I+ I Q D +L R + +I + I Sbjct: 338 IAGEINKNIRNGK----------QYSDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 383 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKD++A R I + +DDLS ++ P + + K+ ++Y Sbjct: 384 GIKFYDRKEIKDILAYLRLISNPDDDLSLRRIVNVPKRGIGDTTMDKVADAAAKRGMSLY 443 Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + I L + ++ S D +L + R + Sbjct: 444 ALLSEVDSLEISTRAKNALRDFYDMISNLNRMVEYVSVTDLTEKMLEMTEYRIELQRENT 503 Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTV 577 E ++ +DEF++ T+ E +N SL +++L A + V +MT+ Sbjct: 504 LESKARLENIDEFISVTMDFEKRNDNKSLVSFLTDLALIADIDTMDKEDAPQDAVVLMTM 563 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VF++ VF H Sbjct: 564 HSAKGLEFPTVFIIGMEEGVFPHSRAFTDDEELEEERRL--------------------- 602 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 YVG+TRA +L + + ++ + + Sbjct: 603 -------------AYVGITRAEQELFLTCARMRTLFGRTTANAPSRFLQELPEE 643 >gi|308235914|ref|ZP_07666651.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14018] Length = 956 Score = 317 bits (812), Expect = 6e-84, Method: Composition-based stats. Identities = 111/648 (17%), Positives = 200/648 (30%), Gaps = 131/648 (20%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------YKMFKSTLASLTLAKYLNA 135 K + + K D K L Q+ + F + + L + A Sbjct: 221 KKFTPKLLLSKISDFKNNLVTWQENLKNYAPDYKPGASVSGASSFNAAGNADALYAAVYA 280 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y+ + +DF+DLI+ T LL++ + ++ +IL+DE QDT+ Q+ + Sbjct: 281 EYQNRLSVSNAVDFDDLIMLTVKLLRQNP---QVSAYYKRKFRYILVDEYQDTNHAQYVL 337 Query: 196 IRSLTEDFFVG---------------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 IR L G +T ++ VGD QSIY+F GA+ + + Sbjct: 338 IRELAGVDDAGVDDYSTDSTVSSVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDF 397 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + I L ++RST IL + V S N + Sbjct: 398 EQDFP--------SATTIMLEQNYRSTQTILDAANAVISNNANRKPKK------------ 437 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + ++ + A +A I+ + G D Sbjct: 438 ---------LWTSL-------GKGSPIVGYVADNAQGE-------ASWVAQEIARLAGED 474 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + DI ++ R + + + + +KD Sbjct: 475 ---------GVNYSDIAIMYRANSQSRSLEDAL----IKSGLPYQLVGGTKFYERREVKD 521 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN---- 475 +A + I + +DD++ +L P +I + + + + + + Sbjct: 522 ALAYLQSIANPDDDVNMRRILNVPKRGLGARAESQITSYAKENSISFWSALSQIDKIAEQ 581 Query: 476 -----CGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + LI A P +L Q + Sbjct: 582 IGISSRTFNALKSFRDLMTSLIDFMKANDSKPSKVVENVLNESGLLQDLRESKDPQDEFR 641 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGL 583 +D L + + EQN+ ++ + + +V +MT+HTAKGL Sbjct: 642 VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVADSDQLPDQGEDTGKVTLMTLHTAKGL 701 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 702 EYPVVFLTGMEQGTFPHSRCVD----------------------------------NQKE 727 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 E RL YVG+TRA L + + S KS + + + + Sbjct: 728 LCEERRLAYVGITRAKKILYVTWAAERSQWGKSAEMIQSQFLDEIPAD 775 >gi|323693634|ref|ZP_08107834.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673] gi|323502325|gb|EGB18187.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673] Length = 813 Score = 317 bits (812), Expect = 6e-84, Method: Composition-based stats. Identities = 116/751 (15%), Positives = 231/751 (30%), Gaps = 131/751 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ + Sbjct: 27 GAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEMRERVDKIVGFGAESIWVST 86 Query: 66 FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKI 110 F S+ F Q+ ++ Q + D K+ +++ Sbjct: 87 FHSSCVRILRRHIEYLGYSTNFTIYDGDDQRTLMKQIFKRLDVDTKQFKERAVLSRISSA 146 Query: 111 RDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +D T + F+ + Y++ KKN LDF+DLI+ T +L + Sbjct: 147 KDDMITPEEFELNAGGDFREKKVAQIYKEYQKELKKNNALDFDDLIVKTVELFQN---VP 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I++DE QDT+++Q++++ L + R + VGD+ QSIY Sbjct: 204 DVLNYYQERFRYIMVDEYQDTNMVQFKLVDLLAGKY----------RNICVVGDDDQSIY 253 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA + +L ++ +I+L ++RST +IL + V + Sbjct: 254 KFRGANIENILSFEKAFP--------GAKVIKLEQNYRSTQNILNAANGVIRNNRGRKDK 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + + V+ + + + A Sbjct: 306 TLWTAN---------DEGNLVRFLQFDTAYEE--------------------------AE 330 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I I ++ + D VL R + L+ Y I Sbjct: 331 AIVKDIRR---------EKEETGREYSDFAVLYRTNAQSRLLEEK----CILYSIPYRLV 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 IKD++ + I + +DDL+ ++ P + K+ + Sbjct: 378 GGVNFYQRKEIKDILCYLKTIANGQDDLAVQRIINVPKRGIGATSVGKVTIFASANGMSF 437 Query: 467 YEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 Y+ + + K + I + S + +L +++ + Sbjct: 438 YDALLRVRGIPTLGKAADKIGVFTEQIEDFKARLPKMSIKELIEEVLENTGYKKEIEAEG 497 Query: 522 GNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E + ++E +N + E +L + E+ + N + +MT+ Sbjct: 498 EIESETRLQNIEELINKAVSYSENEENPTLDGFLEEVALVADVDNMD--ESENRIVLMTL 555 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P V+L +F I Sbjct: 556 HSAKGLEFPYVYLSGLEDGLFPSSMS--------------------------------IM 583 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 K EE RL YVG+TRA ++L + ++ V + ++ Sbjct: 584 SDDKDAVEEERRLCYVGITRAREKLTLTMARQRMTNGETRYSRASRFVEEIPAWLLEQEE 643 Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 S S + E Sbjct: 644 QPSVFSRAAGRSWGGSPSASSSDRGFGEAAS 674 >gi|311114987|ref|YP_003986208.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019] gi|310946481|gb|ADP39185.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019] Length = 964 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 111/648 (17%), Positives = 200/648 (30%), Gaps = 131/648 (20%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------YKMFKSTLASLTLAKYLNA 135 K + + K D K L Q+ + F + + L + A Sbjct: 229 KKFTPKLLLSKISDFKNNLVTWQENLKNYAPDYKPGASVSGASSFNAAGNADALYAAVYA 288 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y+ + +DF+DLI+ T LL++ + ++ +IL+DE QDT+ Q+ + Sbjct: 289 EYQNRLSVSNAVDFDDLIMLTVKLLRQNP---QVSAYYKRKFRYILVDEYQDTNHAQYVL 345 Query: 196 IRSLTEDFFVG---------------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 IR L G +T ++ VGD QSIY+F GA+ + + Sbjct: 346 IRELAGVDDAGVDDYSTDSTVSSVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDF 405 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + I L ++RST IL + V S N + Sbjct: 406 EQDFP--------SATTIMLEQNYRSTQTILDAANAVISNNANRKPKK------------ 445 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + ++ + A +A I+ + G D Sbjct: 446 ---------LWTSL-------GKGSPIVGYVADNAQGE-------ASWVAQEIARLAGED 482 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + DI ++ R + + + + +KD Sbjct: 483 ---------GVNYSDIAIMYRANSQSRSLEDAL----IKSGLPYQLVGGTKFYERREVKD 529 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN---- 475 +A + I + +DD++ +L P +I + + + + + + Sbjct: 530 ALAYLQSIANPDDDVNMRRILNVPKRGLGARAESQITSYAKENSISFWSALSQIDKIAEQ 589 Query: 476 -----CGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + LI A P +L Q + Sbjct: 590 IGISSRTFNALKSFRDLMTSLIDFMKANDSKPSKVVENVLNESGLLQDLRESKDPQDEFR 649 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGL 583 +D L + + EQN+ ++ + + +V +MT+HTAKGL Sbjct: 650 VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVADSDQLPDQGEDTGKVTLMTLHTAKGL 709 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 710 EYPVVFLTGMEQGTFPHSRCVD----------------------------------NQKE 735 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 E RL YVG+TRA L + + S KS + + + + Sbjct: 736 LCEERRLAYVGITRAKKILYVTWAAERSQWGKSAEMIQSQFLDEIPAD 783 >gi|296121632|ref|YP_003629410.1| exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776] gi|296013972|gb|ADG67211.1| Exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776] Length = 1226 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 158/969 (16%), Positives = 309/969 (31%), Gaps = 109/969 (11%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK--FTPQKNIITQEINKKSPDLKEKLK 101 + + + L+ + L + L + + + + ++ + +L +++ Sbjct: 245 KILRQIMEQLKSQQDSPEPGRLAELFAELSLQARVVGVKPDHWGSPDDHELAKELFTQVR 304 Query: 102 KSQDEFIKI--RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159 + I+ + + +LA L++A YE KK +DF+DL++ + DL Sbjct: 305 DDCKKLIETIQLAQTEFVPYAEKSLAWLSVAGESIRDYELIKKSRACVDFDDLLVLSRDL 364 Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 L+ +R + + I +++DE QDT +Q +++ + + LF V Sbjct: 365 LRND---LTVRQALSRSIRVLMVDEFQDTDPVQADLVEMICGKEL-------TTGKLFLV 414 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD+KQSIY F GA+P K + L ++FRS IL V+ +F Sbjct: 415 GDQKQSIYRFRGADPLVFRSLKSKIPAAGQ--------LPLTINFRSQPPILHFVNILFR 466 Query: 280 IPEN------------------AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 +T + +++ + TV L + + + Sbjct: 467 RVMGADYEALEPSFADEKPELERIEFLWATTDVVENKAVQGSIPSTVPLAQGLADEQARD 526 Query: 322 CNPQQESWTSYFDSLPQESS---------ASILARRIAYTISNMIGTDTIF---SNGKKR 369 + D + S A IA I ++ T +G R Sbjct: 527 AADAESQDVENIDDDSRSDSGEKQTAPFLRRREADWIARRILELLADPTPRIREKSGPWR 586 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I DI +L R + + I I DL L +F+ Sbjct: 587 TIVPGDITILFRALTNLEVYEQALEA----AGIDYYVAGGRAFFAQQEIYDLAHLCQFLD 642 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----FANCGISKFQHVI 485 ED S V +L+SP F FS+ I ++ ++ + ++ Q Sbjct: 643 DPEDGFSLVGLLRSPFFCFSDPLIHRLASRAGGITQSLFAEASVVSGLSPEETAQVQFAA 702 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSY 544 + + L+ L G+ + + + + + + Sbjct: 703 QTLGSLVEQRDHWPLARIIRRALELTGYEAIVSQEFLGSRKLANVHKAIELARQFDLAGG 762 Query: 545 SSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 S + E + + + + VR+M++H +KGLE PVVF+ D Sbjct: 763 SRAAFVTQLRESIDQESREELAATHPESSSVVRLMSIHQSKGLEFPVVFVADMNR---PR 819 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + P + ++ + + + ++ EEY RLLYV TRA D Sbjct: 820 KTESLPPTLHPQLGALVTPSNPLGERQKHPVGQFIEIMEEAASLEEYQRLLYVAATRARD 879 Query: 661 QLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 LI+ K S V+ R + + H Sbjct: 880 LLILSAGIKGFDEGKFSPWMLVLKQVFHLETGLLRNDPWFASGHEDVKTPQEIPLIRTHH 939 Query: 720 ENTPLE--------------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 + + + + E +L + ++ L+ S ++ Sbjct: 940 QPPQFIDHRVQRQGVHKLSFPQVWNELELAESLPWPQLVADVQRGAEGRRRLSVSRLEEF 999 Query: 766 GKTNL---------------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810 + + + LS + G +IH +L+ + + + Sbjct: 1000 QEQSSSKLKSLVPAGELEAHSASLSRSDAELLGEMIHGVLERFEPRAAEESEKALLHRLW 1059 Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-----SEVSVSGKINCPKK----D 861 + PA +L + L+ T + + E+ S + + Sbjct: 1060 LWCQRQPAPPGGQILEQAQQWLKTFASTELIDELAMASELNRELEFSLDWKMTGEEPKRE 1119 Query: 862 IIISGRIDQISIS-QQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKS 919 I G ID + Q + I +YKT E + + QL Y ++ + Sbjct: 1120 TEIYGLIDVLMKDSQDDWIILDYKTSRLAAGVTDELLLQPYRLQLGTYALAVQRLFGRLP 1179 Query: 920 LVCLLIYVS 928 LI++ Sbjct: 1180 KKAELIFMR 1188 >gi|315660158|ref|ZP_07913015.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590] gi|315494839|gb|EFU83177.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590] Length = 730 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 121/717 (16%), Positives = 230/717 (32%), Gaps = 128/717 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L + Sbjct: 28 GAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNKAAKEMKQRVEQLVGEEASVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFISAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + + Y+ +N LDF+DLI+ T L ++ + Sbjct: 148 KNELKTPDDAQKEANNYHEQMIATVYSGYQRQLSRNEALDFDDLIMTTIRLFERVPDA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKMLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + I L ++RST IL ++V + Sbjct: 255 WRGADIQNILSFEEDYPE--------AKSIYLEQNYRSTKTILNAANEVIKNNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIKYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + + DI +L R + ++ I Sbjct: 332 VVREVMKHQRNGK----------SYGDIAILYRTNAQSRVLEETF----MKSNIPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R + + DD+S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPSSVEKIQAYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + LI +F + IL R Sbjct: 438 DALSEADFIGLSKKVTQGCIQFYDLLQNLIKEQEFLEISEIVEEILEKTGYRAMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ LDEF++ E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEAQIDDGVTMMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFL+ +F H IK Sbjct: 558 AKGLEFPIVFLMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 +E R+ YV +TRA +QL I + ++ +S + + + + Sbjct: 586 DDHDMQEERRICYVAITRAEEQLYITRATSRMLFGRSQSNMPSRFLEEIPEDLLELP 642 >gi|302390294|ref|YP_003826115.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM 16646] gi|302200922|gb|ADL08492.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM 16646] Length = 731 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 111/668 (16%), Positives = 223/668 (33%), Gaps = 126/668 (18%) Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 L + +K + K++L+ ++ + +D Sbjct: 118 LIRDCIKALGLDEKKYAPTAVLNYIGRAKDRLQTPEECHDRAKDIREKA----------- 166 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + Y++ K++ LDF+DLI+ T +L +K + HIL+DE QDT Sbjct: 167 -MSRVYELYQKRLKESNALDFDDLIMKTVELFRKNPE---VLSYYQNRFRHILVDEYQDT 222 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +++ L E R L VGD+ QSIY F GA+ + +L + Sbjct: 223 NRAQYVLVKLLAE----------KHRNLCVVGDDDQSIYGFRGADIRNILDFEEDFP--- 269 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 ++I L ++RST +IL + V S + + S Sbjct: 270 -----DATVIRLEQNYRSTQNILDAANSVISHNFDRKQKS-------------------- 304 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW + + + + A IA I ++ Sbjct: 305 -LW-------TENGRGDKIYLATLGNEHEE-------AFFIAREIEKLVN---------M 340 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + + +D VL R + ++ + + IKD++A R + Sbjct: 341 KNFRFRDFAVLYRTNAQSRVLEEMM----VKMGLPYKIVGGVRFYQRREIKDILAYLRVV 396 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-----VYEYIQKFANCGISKFQH 483 + D++S + ++ P E + + E E + E + + ++ SK + Sbjct: 397 ANPSDNVSLLRIINVPRRGIGEATVETLKLLAEEREKSVYHIMKEELAELSSRVRSKLRD 456 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 + I + I A S D IL ++ + + + L E + + E Sbjct: 457 FVDMIDDFIKKAGELSVPDLIAYILDRSGYLKELEAENTPDAQSRIENLKEMIGVAIEFE 516 Query: 541 QN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + ++LQ+ ++E+ + + V +MT+H+AKGLE PVVFL +F Sbjct: 517 KKFPGAALQDFLAEIALVSDVD--EFDEDRDAVILMTLHSAKGLEFPVVFLSGMDEGIFP 574 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H YVG+TRA Sbjct: 575 HSRAMFDEEELEEERRL----------------------------------CYVGITRAK 600 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 +L + + + + ++ + + + + + +++ + + Sbjct: 601 KRLYLTRAWSRNLYGNTSYYSASRFIDEIPARLIKEIRPGDDTLEEEEKPREDKKAEQAV 660 Query: 720 ENTPLERE 727 P ++ Sbjct: 661 PVKPRTQK 668 >gi|256848517|ref|ZP_05553959.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN] gi|256714784|gb|EEU29763.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN] Length = 1281 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 151/836 (18%), Positives = 281/836 (33%), Gaps = 75/836 (8%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLS----METGNPTILKKAQTLQQASQTQCIEERF 66 ++ I + + + S S + L + LQ++ T +E Sbjct: 220 QTLLPILRQFFDQLIADWEGLVTKASTSGFDNLAETLTGDLILVKDLQKSLTTATWDELQ 279 Query: 67 SLLSSFFLTQ------KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + +S + K P E+ +LK++LK QD++ + +R K Sbjct: 280 AQISGIKFGRLKTQRFKDDPDGKAHYDELKDGRNELKKRLKTLQDKYFQYDERELRAKTA 339 Query: 121 KS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-RDVSAWIRYKIDQE 176 + +++ K Y+EAK +LDF DL +L D + ++ Sbjct: 340 AARMMVEELVSVTKDFRQSYQEAKLARHMLDFSDLEHYAYQILTNQSDAGKQVLNELRHH 399 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 IL+DE QDT+ +Q +++ L LF VGD KQSIY F A+P Sbjct: 400 YREILVDEYQDTNRLQDDLLNQL---------HDPQLNHLFMVGDVKQSIYRFRQADPTL 450 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTT 294 L + Q + + I L +FRS ++ + VF+ + + D Sbjct: 451 FLDKYERYQS----SSKNDETIILAENFRSMNNVTEFTNLVFTQLMDRTVGEMPYDDQAQ 506 Query: 295 IRHRSSRIG----QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 ++ + +L + + ++E+ Y + +A Sbjct: 507 LKFAAKWYDPKEVSPVPTELMVYDANADNETIIDKEENQQRYIKLPEGSDKYAGEVWMVA 566 Query: 351 YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I M+ + G +R IQ DI++L R + I L I VV Sbjct: 567 MRIRQMLDNQERIYDPELGHERPIQPADIVILERTKSPNNRIVEQFGQL----NIPVVVQ 622 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 D ++ +++L + I + D+ V +L+SP+ +E ++ + H Y Sbjct: 623 DVQNYFKATEVRTMISLLKVIDNPYQDIPLVAVLRSPIVGLTEPEMAYL-RINHRYGNFY 681 Query: 468 EYIQKFANCGIS---------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 E +Q F K + + + AQ S D I Sbjct: 682 EAVQFFTQQDPEQWSATTDVDLEKLHVKLSRFLDRLTKFKVTAQQQSLVDLIWQIYQTTG 741 Query: 513 GRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA---- 567 G++ L EQ+S+ L + I +E+ + A Sbjct: 742 YLDYVGGIPGGSQRQANLHALYERAHTYEQSSFKGLYQFIHFIERMQKRDEDLGEAPVEL 801 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + V +MT+H +KGL+ P+VF++D S + I P L P Sbjct: 802 ATDAVNVMTIHGSKGLQFPIVFVIDMNHHFNSRDVAGNLVIEPHLGIGIRYLGDAPMKGD 861 Query: 628 RNNIVSD-------------LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 ++ ++ + + ++ + E RLLYV +TRA +LI+ N N K Sbjct: 862 DQSLTAENIKVTYDLPQRTVVADAITRANRAEEMRLLYVALTRAEQRLILTGSVNEKNSK 921 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 + + + +S + +WI ++ + + +T Sbjct: 922 NNLKALGKQWSKGLQGFQTVLGPQLRLDSRSMLDWIGLTLVRTPQFDSQVMKMDTDGAPH 981 Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790 + L + ++ R IH++L Sbjct: 982 QLGLPKADYSMQLWTANGVEKELAKLRTAHRETIVGDAGSQPLTADER-QFIHRVL 1036 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 20/182 (10%) Query: 773 LLSDNQTFNRGLIIHKLLQVIF----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828 S G H + Q++ + + + I + + + I Sbjct: 1101 GDSAPAPTEVGTATHLVFQMLDLTTGEVTADQVQQTIDQLVRERLIANRRIAAQIDVAGI 1160 Query: 829 TRLLENPMMTTAMS--CDSYSEVSVSGKINCP---------KKDIIISGRIDQISISQQN 877 + + + E S + I+I G ID Q Sbjct: 1161 VEFYQTALGQRILQQPAAVVREQPFSMLLEGDQLFKNLDHDDGQILIHGIIDGYLKGNQG 1220 Query: 878 IFIFEYKTHHHVPQE---IEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVF 933 I +F+YKT + +P + + I + Q+++Y L+ + L V ++ Sbjct: 1221 IELFDYKTDYLLPHDDQRLAEIVDRYQGQVNLYAAALRQM-TGLPVSHRYLYLVKTGTLY 1279 Query: 934 II 935 + Sbjct: 1280 EL 1281 >gi|240146225|ref|ZP_04744826.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82] gi|257201636|gb|EEU99920.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82] Length = 755 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 114/613 (18%), Positives = 203/613 (33%), Gaps = 116/613 (18%) Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 + S L + + I T+ + + ++DE I + + S+ Sbjct: 119 YDADDSKSLMKDICKRLEIDTKIYKE--KSFLAAISSAKDELITPTELMR--RALTSSDY 174 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + Y+EA KN LDF+DLI+ T +LL+ ++ + ++I++DE Sbjct: 175 AKRKQAEVYREYQEALHKNNALDFDDLIMKTVELLQSDPE---VKNYYQERFHYIMVDEY 231 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+E+IR L + + L VGD+ QSIY F GA +L ++ Sbjct: 232 QDTNTAQFELIRLLAGKY----------QNLCVVGDDDQSIYKFRGANIYNILNFEKHFP 281 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 I+L ++RST +IL + V + + + Sbjct: 282 --------DAKTIKLEQNYRSTQNILNAANSVIANNVGRKSKT----------------- 316 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + A IA I+ + Sbjct: 317 ----LWTANDEGKKIDFEQFNTGY--------------EEADYIARDIAGGVRNG----- 353 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 D VL R + L I +KDL+A Sbjct: 354 ----DYHYGDYAVLYRTNAQSRLFEERF----IVSNIPYKIVGGVNFYARKEVKDLLAYL 405 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-----S 479 + I + DDL+ +L P + ++ + Y+ +++ S Sbjct: 406 KTIDNARDDLAVRRILNVPKRGIGATTVNRVSDYAEAYDISFYDALKRADEIPSIGKAAS 465 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 K + + I +F S D ++ ++ + +E + +DE L+ Sbjct: 466 KVKPFVNLIQVFRSKLEFISISDLLREVIEETGYVKELEAEGTDEAEARIENIDELLSKV 525 Query: 537 LRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + E++ +L + E+ + + + V +MT+H+AKGLE P V+L Sbjct: 526 VSYEESEEHPTLSGFLEEVALVADID--SLEDDSDYVVLMTLHSAKGLEFPKVYLAGMED 583 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + EE RL YVG+ Sbjct: 584 GLFPS-------------------------------YMSITSDDSSEQLEEERRLAYVGI 612 Query: 656 TRASDQLIICKHS 668 TRA +L I Sbjct: 613 TRAMKELTITCAK 625 >gi|70726047|ref|YP_252961.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435] gi|68446771|dbj|BAE04355.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 731 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 119/717 (16%), Positives = 227/717 (31%), Gaps = 128/717 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVEQLVGEEAQVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147 Query: 111 RDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + ++ + + + Y+ +N LDF+DLI+ T L ++ + Sbjct: 148 KNELKTPEDAINEANDFHSQMVATVYSGYQRQLTRNEALDFDDLIMKTIQLFERIPDA-- 205 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + I L ++RST ILT ++V + Sbjct: 255 WRGADIQNILSFEEDYP--------DAKTIFLEQNYRSTKTILTAANEVIKHNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + A Sbjct: 307 ---------------------LW-------TANTGGEKIKYYEAMTERDE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I D+ +L R + ++ + Sbjct: 332 VVREIMKHRKAGK----------DYSDMAILYRTNAQSRVLEETF----MKSNLPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R + + D++S ++ P + KI +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRVVANSNDEISLQRIINVPKRGIGPSSVEKIQRYANDNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + I LI +F + IL R Sbjct: 438 DALAEVDFIGLSKKVTQECIKFYELIQNLIKEQEFLEVSEIVVEILDKSGYRDMLEREQT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEAQIESGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFL+ +F H IK Sbjct: 558 AKGLEFPIVFLMGMEESLFPHIR--------------------------------AIKSD 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 EE R+ YV +TRA + L I ++ +S + + + Sbjct: 586 DDHEMEEERRICYVAITRAEEVLYITHATSRMLYGRSQSNMPSRFLREIPEDLLETP 642 >gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91680975|gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] Length = 1115 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 155/966 (16%), Positives = 306/966 (31%), Gaps = 106/966 (10%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 ++ + +E + ++L + A Sbjct: 214 IAAVKRFEDALAAVGFEEEDTGLRCRTLIALVDILNPGKLSAGAPDTAALIAALNFPR-- 271 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKS----------PDLKEKLKKSQDEFIKIRDRFNT 116 + T+K T ++ + + + L D + Sbjct: 272 ---HTSCFTEKGTRRQLRNGTKWQDAAAKVGLKKADGKKTSDALVPLYDGCHNALETLLA 328 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + L + + K+ +LDF+DL+ DLL +R + Q Sbjct: 329 AIAGELLSRLCAEMQGLLLEWRDYKRDAALLDFDDLLFTARDLLAGHPE---VRRALSQR 385 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-----SPRTLFAVGDEKQSIYSFHG 231 ++L+DE QDT +Q E++ + + G + P LF VGD KQ+IY F G Sbjct: 386 YRYVLVDEFQDTDPLQTEILWMICGEDCEGADGAPLKRPLRPGALFMVGDPKQAIYRFRG 445 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ L + + A + + +FRS IL V+K F Sbjct: 446 ADVNAYLAARSAVPQDA--------RLAITANFRSVEPILAFVNKRFERV---------- 487 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 S GQ G +L D+ T + + A +A Sbjct: 488 ------LSEEAGQPGFAELSPVRPPNGDAPAVVAL-DVTLPQGASGVSAIRDAEAAALAE 540 Query: 352 TISNMIG--TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 ++G + R + DI +L + + D I V Sbjct: 541 LCCRLVGNLQVHDPETKELRPCRLGDIALLAPAGTELWRFEEVLE----DRGIPVATQAG 596 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHET 463 I DL+AL R + D L+ +L+ PL +E+++ I R Sbjct: 597 KGFFRRQEIHDLIALVRTLADPRDTLALGALLRGPLIGLTENELLDIMEGLPVDPDRPAR 656 Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG- 522 + + + I+ + L + +P+ + R RF Sbjct: 657 LPTLTVGTNPEHIAHAVARKAIENLQALRRRIRITTPYALLADAMSDFHVRPHLRQRFRT 716 Query: 523 --NEVIDVLDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + +D FL F + + ++ ++ E + A V ++TVH Sbjct: 717 GAERAVANVDLFLEFARAYDVRGLRAFSRDMTAKWEDDEDQAEGRPDAEEESVSLITVHA 776 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVV ++ + F+ + + D P IP + + + + Sbjct: 777 AKGLEWPVVIPINMTGKPFAGGVL--------MQDRPNSRFSIPVLGTEPSDYAAMKTMN 828 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 E RL YVG+TR+ D L++ ++ + + + Sbjct: 829 ALERDRERVRLWYVGVTRSRDLLVL--------------PRHTELPKECWATLVDLDVGA 874 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 L + A + N + K ++ + P Sbjct: 875 LPAVDPESFGPAGTRAARIEANEQTREIFAAEAGRIFAAREKIVWRQPSRSEVDGEGEKP 934 Query: 760 STIDTKGKTNLESLLSDN---QTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNA 813 + + + + RG+I+HKL++ I + + I + ++ Sbjct: 935 DIRIDHSEPPGPAEVEKPVVVGSAQRGVILHKLMEEIINGEVGEHMSEIESRAALLKQHL 994 Query: 814 KLWP--AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871 + P + L ++ + L P + +E+ V G + ++++ISG++D + Sbjct: 995 GIEPTAEPQPVELAATVLKTLALPAIKAL-RPRMVAELPVFGSVAGADEEVLISGQVDVV 1053 Query: 872 SISQ-QNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 ++ I + ++K+ + Q+ Y K LL++++ Sbjct: 1054 ALDDAGEIDVVVDWKSDVDPS---AAAVDHYRQQIGDYR----RLTGAK--KALLVFMTA 1104 Query: 930 PKVFII 935 +V I Sbjct: 1105 GQVVEI 1110 >gi|302670100|ref|YP_003830060.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus B316] gi|302394573|gb|ADL33478.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus B316] Length = 1317 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 150/1102 (13%), Positives = 316/1102 (28%), Gaps = 245/1102 (22%) Query: 43 NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT-------PQKNIITQEINKKSPD 95 + ++ A + ++ F L + + P K + K D Sbjct: 248 GDNLDADKNSILAALKQDTYDQLFDGLRGISFGRISSKKDPTVNPDKREYVKNERGKIKD 307 Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 + L ++ ++ L ++ K++ ++DF D+ Sbjct: 308 RVKDLVETYFALPAETVVEQMALCDRAVRELCRLTIRYKQLFDAKKREKQLIDFPDMEHF 367 Query: 156 TNDLLKKRDVSAW-----------------IRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 +L + + +LIDE QD++ +Q ++RS Sbjct: 368 ALQILVDHPDEEEAKGKTCAEIIEMCTPSAVALEYRDYYREVLIDEYQDSNNVQELMLRS 427 Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 ++ D F VGD KQSIY F A P+ + + K I Sbjct: 428 ISGDMPDKSER-------FMVGDVKQSIYKFRLARPEIFMEKLHSYDKNEKALD---RRI 477 Query: 259 ELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 +L +FRS ++L + +F A + D + + + E ++ Sbjct: 478 DLHKNFRSRKEVLEATNYIFEKIMGADLGSVDYDEDAKLVTGADYYEEPTYNVTPELILF 537 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 DS ++L A IA I ++ D + ++ KD+ Sbjct: 538 DKDSDN-----------EALSDFDPKEKEALVIAERIHKLMDED--------KNLRFKDM 578 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 ++L+R + + + + I + + + ++ L + + D+ Sbjct: 579 VILLRSLSG---WDDVFKKVLEEQGIPTYIESKSGYFEAYEVAVILYLLTIVDNPSQDIP 635 Query: 437 FVCMLKSPLFNFSEDDIFKIC--------------------------------------- 457 V ++ SP+ F+++++ ++ Sbjct: 636 LVSVMHSPIGGFTDEELARLRVMVKEDDKASIEDSLYYGLKALTRESDEATSTGRDVLMN 695 Query: 458 -------------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 + + E N + K I ++ EL I+ + H+ Sbjct: 696 EASAGKVGLMDEVASTGKAGAMNEVASAGRNALMDKLVKFIDFVEELRTISIYTPVHELL 755 Query: 505 TLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----P 558 I+ + GN+ LD + L E+ S+ L + +E Sbjct: 756 QHIMDETGFDKYCLAMPAGNQRKANLDLLMARALSFEKTSFKGLFHFVRYIEHMKLVEVD 815 Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 N + VRIM++H +KGLE PVVF+ V + + + L Sbjct: 816 YGEAGIIDENADVVRIMSIHKSKGLEFPVVFVSGLAKGVNLRETKGDLIVDMDLGIGVKS 875 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR--------------------- 657 + K + +K + E R+LYV +TR Sbjct: 876 INSEIRVKYDTLKRIIIADKMKTDSLGEELRVLYVALTRAKEKLIMTGALKKPLDAITKE 935 Query: 658 ASDQLIICKHSNT-SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 A +I + + ++ D++ S + K + + + Y+ S Sbjct: 936 ARRLPVIAGKEKLLPYSLRESAGSYLDLILPSVVSHPGFSKGLAALGVPDEMYRGYQESE 995 Query: 717 HHPENTP--------------------LEREETIKQLMDEQKIPKKLFSPIKNDINEP-- 754 + + R++ + + + K + P Sbjct: 996 SQVPDFSFVFLSDDEIAADMLKGDVMGISRQQELSDAVKAYSGEEAERLREKFEAKYPFE 1055 Query: 755 -----------------------YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 + S + + + + RG H++++ Sbjct: 1056 YLKGLFTKTTVTELKKHMLEEMGEVFTHSADYAEERNDDIEHIKKLTGAERGTAYHRIME 1115 Query: 792 VIFT-------LPEHKRKNFITSYCTKNAKLWPA-----KEYKNLLLS------------ 827 ++ L + R + + + + +E +N+ Sbjct: 1116 ILDKDIYGNEKLMQEARDIYGNDELEQESGDIRSNEELMQEAENIKTEHRKIDPVSKRIY 1175 Query: 828 ------------------------ITRLLENPMMTTA---MSCDSY-SEVSVSGKINCPK 859 IT L + E I + Sbjct: 1176 GWMKGMISKGMITEEYLPSIWCPDITTFLSTDLGQRMGMAFRRGELVREKPFMMGIPASE 1235 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911 + ++I G ID I I + +YKT QE + + + QL +Y++ L Sbjct: 1236 LDDKYPESETVLIQGIIDAWFIEDGQIVLLDYKTDRV--QEEQELVDRYSIQLDLYKRAL 1293 Query: 912 KDSYPNKSLVCLLIYVSEPKVF 933 + + K + + KV Sbjct: 1294 ESATNMKVKEVFIYAFALGKVI 1315 >gi|67458566|ref|YP_246190.1| ATP-dependent helicase [Rickettsia felis URRWXCal2] gi|67004099|gb|AAY61025.1| ATP-dependent helicase [Rickettsia felis URRWXCal2] Length = 815 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 171/620 (27%), Positives = 290/620 (46%), Gaps = 42/620 (6%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 F T+ +K+ +++E+ +K L +L+K E ++ + ++ T L Sbjct: 237 KEIFFTKDGKKRKSFLSKELIRKYLKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ EINHIL+DE QDTS Sbjct: 297 AHIILKKYDFYKEENNLLDYDDLIYYTEKLLNNKTTHEWLLHKLESEINHILVDEAQDTS 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L +F + + F VGD+KQSI+SF GA+ + T Sbjct: 357 PQQWNIITTLITEFNA---ANKPNNSTFIVGDDKQSIFSFQGADLHNFSLVNEQLKTNLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 NA +KF I L S+RS A+IL V ++ S + SS G + Sbjct: 414 NANKKFKNITLEYSYRSCAEILQFTHNVLKNIKSNYPSLFLSDNPL--ISSFRTHQGFIT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W V S+ ++ W D +S+A +L +I I I + I + R Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIQEQIESKEILPSTASR 526 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KD ++LVRKR + + + K+ V +DR L ++L I DL+++ +F+L Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEISDRINLKENLTIMDLISVAKFVL 582 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +DDL+ +LKSP+ +E ++++ + +S + + ++ Sbjct: 583 LSDDDLNLAGLLKSPIIGMNEKQLYEL---------LVNKTDNSLWDNLSACEEIYAKLN 633 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 LI I + + +FF L++ R+ + D+++E L + + +SLQ Sbjct: 634 SLIVIYKISTVENFFDLVVNNLNLREIY-------DDDMINELLTLSKNYTNDIDNSLQG 686 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 I+ E IKR + +++R+MTVH +KGLE+P+V L D + Sbjct: 687 FIAWFENNDIYIKRDM-EHSDKIRVMTVHGSKGLEAPIVILCD--------STTLPVSSN 737 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + DD G + + +L + K +EY RLLYV MTRA D+LIIC Sbjct: 738 KFIWDDKGEMFFSANIVDTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 795 Query: 670 TSNEKKSNQRTWYDMVYDSF 689 SN+ + + WY++V +F Sbjct: 796 -SNKAAAPENCWYEIVKQTF 814 >gi|15613211|ref|NP_241514.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] gi|10173262|dbj|BAB04367.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] Length = 747 Score = 316 bits (810), Expect = 8e-84, Method: Composition-based stats. Identities = 115/631 (18%), Positives = 211/631 (33%), Gaps = 122/631 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y++ KKN LDF+DLI+ T L KK + ++ +IL+DE QDT+ Sbjct: 181 AAEVYVEYQKQLKKNQALDFDDLIMKTTSLFKK---VPEVLEYYQRKFQYILVDEYQDTN 237 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +++ L + + VGD QSIY + GA+ +L + Q Sbjct: 238 RAQYMLVKML----------GDRHKNVCVVGDSDQSIYKWRGADIANILSFEEDYQ---- 283 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I L ++RST IL ++V + + Sbjct: 284 ----DAEVILLEQNYRSTKTILEAANRVIENNVKRKPKN--------------------- 318 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + + + A+ + I I Sbjct: 319 LW-------TENEQGAKIGFYKADTEQGE-------AQFVVEKIREAIQDG--------- 355 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 KDI +L R + ++ + I D IKD++A R + Sbjct: 356 -ASYKDIAILYRTNAQSRVMEEML----IKSNIDYNIVGGTKFYDRKEIKDVLAYLRLVA 410 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQH 483 + +DD+S ++ P + KI + +++ +++ +SK Sbjct: 411 NPDDDISLQRIINVPKRGIGATTVDKIAAYAERQGISMFAALKEIEQIGVTSRAVSKLVE 470 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 + + + + ++ S + +L R + E + +DEFL+ T E Sbjct: 471 FTEQLGHWVQMQEYLSVTELVEELLERTGYRDMLQNEKTLEAQSRLENIDEFLSVTQEFE 530 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGS 595 + + SL +++L K + + V +MT+H+AKGLE P+VFL+ Sbjct: 531 KSSDDKSLIAFLTDLALISDIDKLDDEDDGAKPTDAVVLMTLHSAKGLEFPIVFLIGLEE 590 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F H L YVG+ Sbjct: 591 GIFPHSRSLFEDDEMEEERR----------------------------------LAYVGI 616 Query: 656 TRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN-SINKDEWIA 711 TRA QL + + + D + + + +L ++ A Sbjct: 617 TRAEKQLYLTSAQLRTIYGRTNANPPSRFIDEIPEDCLEFLNEPQEELPWMKTSRPVTKA 676 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + S P+ T E+ + D+ + K Sbjct: 677 KQPSRSVPQMTTTGGEQFAWTVGDKAEHKKW 707 >gi|313115007|ref|ZP_07800500.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf. prausnitzii KLE1255] gi|310622698|gb|EFQ06160.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf. prausnitzii KLE1255] Length = 1240 Score = 316 bits (810), Expect = 9e-84, Method: Composition-based stats. Identities = 148/1039 (14%), Positives = 295/1039 (28%), Gaps = 145/1039 (13%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L ++ K + + +++ S + G L A Sbjct: 241 LAQAQAEEKGKTAASKAKAVAGVNDKFAEPLSRLESAAALLGEVERLAAAGQWTPLYDKL 300 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK-- 118 + + ++ + + + + + + Sbjct: 301 TPY-VLGMEEIPGFKGMKKRLTGDHKAAVRTRADEAAKLFEHITELVSCSEEEAEADRRA 359 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEI 177 A + +A + KK+ +L+F D LL+ D V + I Q Sbjct: 360 ALPRLRALFVAVRDFDARFSAKKKERKLLEFSDFEHQALRLLRTPDGVCTPLCQSIRQSY 419 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +++DE QDT+ +Q + R L + LF VGD KQSIY F A+P Sbjct: 420 AAVMVDEYQDTNALQDAIYRCLAS---------PAGDDLFLVGDLKQSIYRFRQADPSIF 470 Query: 238 LREKRIN---------QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + + A +++ L +FRS ++ ++ +F Q Sbjct: 471 RAKLNAWAPLPSGTARPRPAEGTPGTDALLALDANFRSAPQVVAGINFIFEQLMTPQLGD 530 Query: 289 EDSTTTIRHRSSRIGQ-VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 R G+ G+V+ ++ A Sbjct: 531 TAYGDGQRLVCGAPGEYAGSVEAHFLPDDTAETD------------------------AA 566 Query: 348 RIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 IA + ++ +G R +Q +D +L+ R D I V Sbjct: 567 WIAQRVEELVKNGEPVRDGSSTRPVQYEDCCILLAARGDFLAYEEALTA----RGIPVYA 622 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------- 459 + R L + I+ L++L + I + D+ + P+F F++DD+ ++ Q Sbjct: 623 DARENLMEAAHIRPLISLLKVIDNPAQDIYLAAAMLGPMFGFTDDDLVRLRAQSAAMQKK 682 Query: 460 ------------RHETETVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHD 502 R ++Y + + G K + + L +A+ Sbjct: 683 AQEEQGAKKTGKRASRMSLYGAVLQVVQNGDETPFTRKVKDFYDRLTALRRMARSAPAEQ 742 Query: 503 FFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-- 559 I + + G + F F + N S+L I Q Sbjct: 743 LLEEIFVSTGYLAALGVLENGAHRREDARRFAAFCAQTGANGISALVRAIDAAAQAGSTG 802 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 A V IMT+H +KGL+ PVVF+ DT + + + + Sbjct: 803 QDTVPGGARPGCVTIMTIHRSKGLQFPVVFVGDTARHFNLSDTYQPVLLHREYGAGLRLR 862 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-- 677 +S + + L + T+ E RLLYV +TRA D+LI+ + Sbjct: 863 PEQGESMYKTAAYAALASVHAQETRSEQMRLLYVALTRAQDKLILTVPLGMTKTGNPFAK 922 Query: 678 ----------------QRTWYDMVYDSFHNDERVKKIK-----------LTNSINKDEWI 710 ++ D + + ++ T S Sbjct: 923 AAAFLAAGAGETLNQQAGSFADWLRAALLVHPFGGPLRRLAGDLELPFVFTESEIMVTVQ 982 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-------TID 763 + PE P E ++ + S Sbjct: 983 EAQPEPETPEQEPEAAEPVPADPALVAQLQEGFAWRYPAAKLAAVPAKVSVTSIVHKAEQ 1042 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH--------KRKNFITSYCTKNAKL 815 T + G +H L+ + + +L Sbjct: 1043 TTLERPAFLSKDGLTAAEMGTALHAFLEHADFASLAAAKAAGTLEEAILAERQRQVDTRL 1102 Query: 816 WPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYSEVSVSGKIN----------------- 856 + + L I R E+ + E++ + Sbjct: 1103 VAPEIAEKLNAGRIRRFAESEAFAKICAAEKVLRELAFITALPASAVLTAQGASAQEAAA 1162 Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916 + +++ G D + + ++ + +YKT + + QL++Y + + Sbjct: 1163 VQDEQVLVQGIADLVLVFPDHLELLDYKTDRR--KTEADFLSAYRPQLNLYALAIDKRFA 1220 Query: 917 NKSLV-CLLIYVSEPKVFI 934 K + + + ++ Sbjct: 1221 PKKVTYKGIYSLELGRLIE 1239 >gi|295702475|ref|YP_003595550.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319] gi|294800134|gb|ADF37200.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319] Length = 749 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 129/756 (17%), Positives = 242/756 (32%), Gaps = 139/756 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + Sbjct: 40 GAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKAAREMRERVSNIVGGVAEDIWIST 99 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKK------------SQDEFIKI 110 F + L + +N + + +K LK Sbjct: 100 FHSMCVRILRRDIDRIGFNRNFTILDSTDQLSVIKNILKDQNIDPKKFDPRSLLGSISSA 159 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + F T A + + YE+ KKN LDF+DLI+ T L K+ Sbjct: 160 KNELKVAEEFDKTAAGPYEEVVSKVYKEYEKRLKKNQALDFDDLIMTTIQLFKR---VPE 216 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ ++R L F + VGD QSIY Sbjct: 217 VLTYYQRKFQYIHVDEYQDTNHAQYMLVRLLAARFE----------NVCVVGDSDQSIYR 266 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ K I L ++RST IL + V + N + + Sbjct: 267 WRGADITNILSFEKDYPK--------AKTILLEQNYRSTKTILAAANGVIANNMNRKVKN 318 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW ++ + + + + A+ Sbjct: 319 ---------------------LW------TENDEGQKIYHYQAMSEHDE--------AQF 343 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I + + + D +L R + ++ + I+ Sbjct: 344 VARKIKEAVDSGKR---------KYSDFAILYRTNAQSRVMEEVL----LKSNINYTIVG 390 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKDL+A R I +Q+DD+S ++ P + K+ +++ Sbjct: 391 GIKFYDRKEIKDLLAYLRLIANQDDDISLARIVNVPKRGVGATSVDKVANYGNVHDISIF 450 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + I L + + S + +L R+ Sbjct: 451 KALDEVELMGLTGKATKALRDFQSMISNLAQMQDYMSVTELVEQVLERTGYREALKVEKT 510 Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMT 576 E + +DEFL+ T E+ + SL +++L K + +V +MT Sbjct: 511 IEAQSRLENIDEFLSVTKTFEEASEDKSLVAFLTDLALVADIDKLDDEEEEENEQVILMT 570 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE PVVFL+ VF H Sbjct: 571 LHSAKGLEFPVVFLMGMEEGVFPHSRSL-------------------------------- 598 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 + + EE RL YVG+TRA +L + + K+N + + Sbjct: 599 --FEDNEMEEERRLAYVGITRAEQELYLLNAQMRTLFGKTNVNPKSRFI-------GEIP 649 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + + A S R+ + + Sbjct: 650 SELVESLNEAMRKPAAGRSGASASPFAARRQAAVAK 685 >gi|196250519|ref|ZP_03149210.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16] gi|196210009|gb|EDY04777.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16] Length = 724 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 123/695 (17%), Positives = 225/695 (32%), Gaps = 137/695 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ Q L + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQALLGGAAEDVWIST 91 Query: 66 FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106 F + L T + + K I+ + I+ K + + L Sbjct: 92 FHSMCVRILRRDIDRIGINRNFSILDPTDQLSVIKAILKEKNIDPKKFEPRTILGTISGA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + K +++ + + Y++ +N LDF+DLI+ T L + Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVSDVYQEYQQRLLRNHSLDFDDLIMTTLQLFDR---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I IDE QDT+ Q+ +++ L E F + + AVGD QSI Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL ++V N + Sbjct: 257 YRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + ++ + + A Sbjct: 309 KR---------------------LW-------TENPEGKPITYYEAMNEADE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I I + + D VL R + +I + I Sbjct: 334 QFVAGRIQEAIESGAR---------RYSDFAVLYRTNAQSRVIEEML----LKANIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DDLS + ++ P I K+ + Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E + + + + + ++ S + +L R + Sbjct: 441 LFEALGELEMIGLSAKATGALAAFRGQLEQWTQLQEYVSVTELVEEVLDKSGYRDMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573 E + LDEFL+ T E + SL +++L + + V Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENASDDKSLIAFLTDLALISDLDELNGNDQTEEGDAVV 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ +F H Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLDDEDEMEEE-------------------- 600 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 RL YVG+TRA ++L++ Sbjct: 601 --------------RRLAYVGITRAEEELVLTSAQ 621 >gi|284124401|ref|ZP_06386963.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3] gi|283829217|gb|EFC33632.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3] Length = 1180 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 159/845 (18%), Positives = 294/845 (34%), Gaps = 101/845 (11%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 LTL + + Y+EAK LDF DL + T DLL+ + IR ++ + ++DE Sbjct: 344 LLTLYTRVLSDYDEAKLSQGTLDFNDLQLKTRDLLRDNE---KIRKELVDRHQYYMVDEY 400 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q+E++ LT + LF VGD KQSIY F A+ + + K+ Sbjct: 401 QDTNELQYELVMLLTNELKSA--------NLFIVGDPKQSIYGFRDADVRVFNKTKQKIV 452 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ- 304 + + I L +FRS D++ V+ FS +E +R + Sbjct: 453 R------EDGKRISLTENFRSLRDVIGFVNYFFSHLMGPGNENEFEVEYEALTQARHAKT 506 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI---SNMIGTDT 361 G +++ D P + ++A+RI I + I Sbjct: 507 NGAIEIL-------------------IGQDGDPSANEYKLIAQRIENMITDAAETIRVRD 547 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +R IQ DI +L+R R P I + I + I D+ Sbjct: 548 KDGKLSERPIQYDDIAILIRARTHLPDIEHAL----LEAGIPYLTTGGIGFYQRQEIYDI 603 Query: 422 MALGRFILSQED-DLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYEYIQKFANCG 477 F+ + D ++S +L+SP F S+ ++++I Q+ E ++ ++ + Sbjct: 604 WNYLNFLNNPSDSNISLAAILRSPAFGISDAELYEISLQKETKQEKKSFWDKTLDY-QGC 662 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFT 536 + + I + I A+ + I+ + G + + L+ Sbjct: 663 TEQLRCAIDTLKTHIEFARRMPVNRLVGTIVNETGLIGTLRTGKQGKQRWANYQKLLDLA 722 Query: 537 LRNEQNSYSS-LQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLV 591 + + L + I L+ R A+ V+IMTVH AKG + PVV L Sbjct: 723 RNFDGDENRQILPDFIDFLDILITEEPREGQAPIKASSGAVQIMTVHAAKGKQFPVVMLP 782 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNR 649 + + + + P+ + IV+ + + E R Sbjct: 783 RLDKK----GQTDQEPFIDAEFGIGFSPLHPANDYQKTEPAIVNFMKSRANEKNVAEKKR 838 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE---------------R 694 L YVG TRA D+LI+ +++ + Y + ++ Sbjct: 839 LFYVGATRAEDRLILSGTLRDNSKPQQMLEWLYTHLEIGEADNLLNLDVKQDVYKNGSTI 898 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP-IKNDINE 753 + +L I++ + E P+E E + + ++P L +P + N Sbjct: 899 DQHFRLQIPISRTLTDTTDTDAASDETMPIEFPEDLPSALQPTEVPTALSAPELANYARC 958 Query: 754 PYILNPSTI----DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809 P + K L+Q+ I Sbjct: 959 PLRYQLENVLRIPSIKQAEPDSDENEMKNAILY-----VLMQIREPSDTQNLDTRIQQAF 1013 Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869 ++ A+ L I L++ + TA+ SE + I I+ GRID Sbjct: 1014 ENFPEIADAE--TELRKHINSFLDSELGQTALRA---SETETNQHIYADVDGHILDGRID 1068 Query: 870 QISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS-LVCLLIY 926 ++ + + I Y T P ++ +Y ++ YP + + + + Sbjct: 1069 RLFRDETGHWQAII-YGTG------DAQHPTVCSPEMELYSLLIHRCYPEQPTVKINIFF 1121 Query: 927 VSEPK 931 + + Sbjct: 1122 TEQGQ 1126 >gi|157803400|ref|YP_001491949.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel] gi|157784663|gb|ABV73164.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel] Length = 872 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 168/655 (25%), Positives = 296/655 (45%), Gaps = 76/655 (11%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 FF T+ +K+++++E+ +K P L +L+K E + + ++ T L Sbjct: 237 KEFFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYHLDELRRIEELEYHTNLLTKL 296 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K++N +LD++DLI T LL + W+ +K++ +INHIL+DE QDT+ Sbjct: 297 AYIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKATHEWLLHKLESKINHILVDEAQDTT 356 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 QW +I +L +F ++F VGD+KQSI+SF GA+ + + T Sbjct: 357 PTQWNIITTLITEFNA---MDKPNNSIFIVGDDKQSIFSFQGADLRNFSLVNEQLKANLT 413 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 A +KF I L S+RS +IL V ++ SS GTV Sbjct: 414 KANKKFKNITLEYSYRSCTEILQFTHYVLQNIKS--DYPNLFFPDNPLISSFRTHQGTVT 471 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---- 365 +W V S+ ++ W D +S+A +L +I I I + I + Sbjct: 472 VWPLVTSKKQ-----EELFWALPEDYKNSKSAADLLIEQIVNFIKEKIESKEILPSICAM 526 Query: 366 -----------------------------------------GKKRVIQAKDILVLVRKRK 384 I KD ++LVRKR Sbjct: 527 KSGYTKINLENSKEFVNQGAECILNVQCPSHSDYKNDSANFSNSSRISEKDFMILVRKRD 586 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + + K+ + +DR L DHL+I DLM++ +F+L +DDL+ C+LKSP Sbjct: 587 E---FSNNLIKELSKAKLKIEISDRINLKDHLSIMDLMSVAKFVLLPDDDLNLACLLKSP 643 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 + +E ++++ + +++++ +S + + + ++ I I + + +FF Sbjct: 644 IIGINEQQLYELLI-NKKDQSLWD--------TLSLYLDIYEKLNSFIEIYKTSTAENFF 694 Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564 T+++ + R+ G++ D+++E L + + +SLQ ++ E IKR Sbjct: 695 TIVVNSLNLRELLNVHNGDDSDDMINELLTLSSNYANDIDNSLQGFVAWFENNNIYIKRN 754 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + +++R+MTVH +KGLE+P+V L D+ S S + +D G + Sbjct: 755 M-EHSDKIRVMTVHGSKGLEAPIVILCDSTSLPVSSNKF--------IWNDNGEMFFSAN 805 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 + + +L + K +EY RLLYV MTRA D LIIC SN + +++ Sbjct: 806 AADTPQFLQELKEAEKLKDLQEYIRLLYVAMTRAKDHLIICGFSNKATTSENSWY 860 >gi|160914774|ref|ZP_02076988.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991] gi|158433314|gb|EDP11603.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991] Length = 1080 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 148/873 (16%), Positives = 295/873 (33%), Gaps = 110/873 (12%) Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 + T+ + K+S +L++ L + K+ + + + Sbjct: 303 SPDKEDKEYTR-LRKESQELEDSLLAILYREDTLIRDM--TKLAPYVQKLVCMCQDYRQS 359 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y K K+ ++DF+D+ +L+ S I ++ I++DE QD++ +Q ++ Sbjct: 360 YAALKAKHEMIDFDDMEHFALAILQANQGS--IAKLYREQFVEIMVDEFQDSNDVQNSLV 417 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 + + + +F VGD KQSIYSF A+P + G+ Sbjct: 418 QLICRE-----------NNVFRVGDIKQSIYSFRHAKPDLMKSL-------IEQKGENDE 459 Query: 257 IIELPLSFRSTADILTVVDKVFS--IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314 +I L ++RS I+ +++F + + S + + V + Sbjct: 460 VIYLSNNYRSKKMIVDFNNELFKILMNMDRFSCSYRKEDDVD-TGVPAQEENNVPICFHA 518 Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374 + + + Q + A IA I ++ + Q K Sbjct: 519 IFHDEIKEAQQLIVAKNTLK-----------ANYIANQIIHIKDKEKR---------QWK 558 Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434 D +VLVR + ++ I + ++ +++ +++ + + + DD Sbjct: 559 DFVVLVRSNARK----DNLKAAFDELNIPYFIDIKYGFYQSSSVQVILSTLKALCNPHDD 614 Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494 +SFV + SPL+N+S + +I ++ + E+ Y Y+ K + L Sbjct: 615 ISFVACMMSPLWNYSAQAMAEIKLKKDKQESYYRYMSKHTPDE-------LADFEALRQK 667 Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 H+ + + + LD ++ E SL+ ++++ Sbjct: 668 RYTYKLHEIINQLFLFHDYYAK---HTSIQEKTNLDLLFEKAIQFEAKEAGSLESFLAQI 724 Query: 555 EQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 +Q + + VR+M++H +KGL+ PVVFL + + + Sbjct: 725 DQIQDAQTAEAIPVGSEADVVRVMSIHQSKGLQFPVVFLWS-SDKQTPIEFKDFCILDAE 783 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L + + K EE R+LYV TRA Q+ I Sbjct: 784 LGIGMKAMELPKRYVRTTLPRIAMEHKKDKEELEEEMRILYVATTRAQQQMHIV------ 837 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW-STHHPENTPLEREETI 730 D + + + WI + S P T E Sbjct: 838 -----------DCILSLEPYRHPLTTSDIYKRKGYTAWILQAFLSMQSPLFTLKEVHHLW 886 Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790 + + ++ PI + L+ ++ T N G +HKL+ Sbjct: 887 ENQVQTKQATTYKKLPIYTKEASSWRLSTASEQNINTTEPFQWKQKNDGTIYGSAMHKLV 946 Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT--------TAMS 842 ++ K KEYK L +I L + + Sbjct: 947 EL------------------SQGKSLTPKEYKALAETINFTLHDSDIKKLNALQSNPIYQ 988 Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902 S N D I+ G +D +SI +Q+I + ++KT + + + + + Sbjct: 989 NALQVWHSYEMPFNVAIHDEILHGYMDFVSIGEQDIILIDFKTDATL--DAQELTKHYRE 1046 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 QL Y++ L+ YP + L + ++ I Sbjct: 1047 QLHTYQRALQALYPQHQIHAYLYSFALNQMLPI 1079 >gi|226310272|ref|YP_002770166.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] gi|226093220|dbj|BAH41662.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 782 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 116/675 (17%), Positives = 213/675 (31%), Gaps = 122/675 (18%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 + ++ + + +A + Y++ + N LDF+DLI+ T Sbjct: 142 RSILAAISGAKNELTDPETYTRLAGDPFAQVAAKVYTAYQKKLRNNQSLDFDDLIMTTVR 201 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 L K+ + ++ +I +DE QDT+ Q+ +I L + R + Sbjct: 202 LFKE---VPEVLEFYQKKFRYIHVDEYQDTNRAQYLLISMLAD----------KHRNVCC 248 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD QSIY + GA+ +L ++ + +I+L ++RST IL ++V Sbjct: 249 VGDADQSIYKWRGADISIILNFEKDYP--------EAKLIKLEQNYRSTKTILQAANQVI 300 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + + + LW + C Q Sbjct: 301 ANNKLRKEKK---------------------LWTENPGGDKIMCF--------------Q 325 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 S A I TI + +L R + ++ + Sbjct: 326 GDSEHDEAYFIVDTIRKQMAQYK----------SYDKFAILYRTNAQSRVVEEVF----I 371 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457 + D IKD++A R I + +DD+S ++ P N + + K+ Sbjct: 372 KSNMPYTIVGGTKFYDRKEIKDILAYLRLISNPDDDISLQRIINVPKRNIGDTTVDKLQA 431 Query: 458 TQRHETETVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 +++++ IQ+ A G+ I L+ + + S + +L Sbjct: 432 YANANGQSLFQAIQETAYMGLPSRTTNAILSFNDLISNLMQMTDYLSVTELVEEVLKRSG 491 Query: 513 GRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYP------PTIK 562 R E + ++EFL+ T E+ N SL +++L Sbjct: 492 YRDSLKEEKTLEAQARLENIEEFLSVTQEFERKNEDKSLLAFLTDLALVADIDSLGDDGA 551 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + + +V +MT+H+AKGLE PVVFLV VF H Sbjct: 552 QEEVSAEGQVVLMTLHSAKGLEFPVVFLVGCEEGVFPHSRSL------------------ 593 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 + EE RL YVG+TRA ++L + + ++N Sbjct: 594 ----------------FDDAEMEEERRLAYVGITRAEERLYMTCARMRTLFGRTNVNAPS 637 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + + + + + K Sbjct: 638 RFLQEIPAELLEGNPATADRGFSGGGRSSAFGQRDGSAFGRDTGARPFGAPSSQAGSAPK 697 Query: 743 LFSPIKNDINEPYIL 757 S + + P Sbjct: 698 FGSAQRTPSSTPATF 712 >gi|291537470|emb|CBL10582.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis M50/1] Length = 747 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 114/613 (18%), Positives = 203/613 (33%), Gaps = 116/613 (18%) Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 + S L + + I T+ + + ++DE I + + S+ Sbjct: 111 YDADDSKSLMKDICKRLEIDTKIYKE--KSFLAAISSAKDELITPTELMQ--RALTSSDY 166 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + Y+EA KN LDF+DLI+ T +LL+ ++ + ++I++DE Sbjct: 167 AKRKQAEVYREYQEALHKNNALDFDDLIMKTVELLQSD---TEVKNYYQERFHYIMVDEY 223 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+E+IR L + + L VGD+ QSIY F GA +L ++ Sbjct: 224 QDTNTAQFELIRLLAGKY----------QNLCVVGDDDQSIYKFRGANIYNILNFEKHFP 273 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 I+L ++RST +IL + V + + + Sbjct: 274 --------DAKTIKLEQNYRSTQNILNAANSVIANNVGRKSKT----------------- 308 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + A IA I+ + Sbjct: 309 ----LWTANDEGKKIDFEQFNTGY--------------EEADYIARDIAGGVRNG----- 345 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 D VL R + L I +KDL+A Sbjct: 346 ----DYHYGDYAVLYRTNAQSRLFEERF----IVSNIPYKIVGGVNFYARKEVKDLLAYL 397 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-----S 479 + I + DDL+ +L P + ++ + Y+ +++ S Sbjct: 398 KTIDNARDDLAVRRILNVPKRGIGATTVNRVSDYAESYDISFYDALKRADEIPSIGKAAS 457 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 K + + I +F S D ++ ++ + +E + +DE L+ Sbjct: 458 KVKPFVNLIQVFRSKLEFISISDLLREVIEETGYVKELEAEGTDEAEARIENIDELLSKV 517 Query: 537 LRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + E++ +L + E+ + + + V +MT+H+AKGLE P V+L Sbjct: 518 VSYEESEEHPTLSGFLEEVALVADID--SLEDDSDYVVLMTLHSAKGLEFPKVYLAGMED 575 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + EE RL YVG+ Sbjct: 576 GLFPS-------------------------------YMSITSDDSSEQLEEERRLAYVGI 604 Query: 656 TRASDQLIICKHS 668 TRA +L I Sbjct: 605 TRAMKELTITCAK 617 >gi|319655031|ref|ZP_08009102.1| PcrA protein [Bacillus sp. 2_A_57_CT2] gi|317393298|gb|EFV74065.1| PcrA protein [Bacillus sp. 2_A_57_CT2] Length = 743 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 119/677 (17%), Positives = 214/677 (31%), Gaps = 118/677 (17%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 Q+ + + + ++ K D + L ++ K +A + Sbjct: 121 QQSVIKSILKDKNLDPKKFDPRAILGSISSAKNELITPEEYAKTAG--DYIQQVASDVYT 178 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y++ ++N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ + Sbjct: 179 EYQKRLRRNQALDFDDLIMITIQLFQR---VPEVLEYYQRKFQYIHVDEYQDTNRAQYML 235 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 ++ L F + L VGD QSIY + GA+ +L ++ Sbjct: 236 VKLLASRF----------KNLCVVGDSDQSIYKWRGADIANILSFEKDYPN--------A 277 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 I L ++RST IL ++V S N + + LW Sbjct: 278 QTIMLEQNYRSTKRILLAANEVISKNLNRKPKN---------------------LW---- 312 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 + + S A+ +A I I + D Sbjct: 313 ---TENAEGNKIFYYRA-------DSEQGEAQFVAGKIKEYISSGKR---------SFSD 353 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I +L R + ++ + I D IKD++A R I + +DD+ Sbjct: 354 IAILYRTNAQSRVMEEVL----LKSNIEYSIVGGIKFYDRKEIKDILAYLRLIANPDDDI 409 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK-----FANCGISKFQHVIKYIH 489 S ++ P + KI +++E ++ + + Sbjct: 410 SLQRVINVPKRGIGSGSVDKIANFAQLHEMSMFEALESIELIGLSPKITKGAIEFRDLVK 469 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYS 545 + ++ S + +L R I+ E + +DEFL+ T E+ + Sbjct: 470 NYTQMQEYLSVTELVEELLEKSGYRDMLIAEKSIEAQSRLENIDEFLSVTKNFEEASEDK 529 Query: 546 SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 SL +++L K V +MT+H+AKGLE PVVFL+ VF H Sbjct: 530 SLIAFLTDLALVADIDKLDDDGEKAESVVLMTLHSAKGLEFPVVFLLGLEEGVFPHSRSL 589 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 YVG+TRA ++L I Sbjct: 590 MEESEMEEERRL----------------------------------AYVGITRAEEELYI 615 Query: 665 CKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 + N + + + D K + + P+ Sbjct: 616 TNAQMRTLFGRTNMNPPSRFIKEIPADLLDGLEPAKKPSPFGSSPFGSPSASRGAQPQRK 675 Query: 723 PLEREETIKQLMDEQKI 739 + R DE Sbjct: 676 AVVRPSASNTGGDEIDW 692 >gi|294497110|ref|YP_003560810.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551] gi|294347047|gb|ADE67376.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551] Length = 741 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 129/756 (17%), Positives = 243/756 (32%), Gaps = 139/756 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ ++ Sbjct: 32 GAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKAAREMRERVASIVGGVAEDIWIST 91 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKK------------SQDEFIKI 110 F + L + +N + + +K LK Sbjct: 92 FHSMCVRILRRDIDRIGFNRNFTILDSTDQLSVIKNILKDQNIDPKKFDPRSLLGSISSA 151 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + F T A + + YE+ KKN LDF+DLI+ T L K+ Sbjct: 152 KNELKVAEEFDKTAAGPYEEVVSKVYKEYEKRLKKNQALDFDDLIMTTIQLFKR---VPE 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ ++R L F + VGD QSIY Sbjct: 209 VLTYYQRKFQYIHVDEYQDTNHAQYMLVRLLAARFE----------NVCVVGDSDQSIYR 258 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ K I L ++RST IL + V + N + + Sbjct: 259 WRGADITNILSFEKDYPK--------AKTILLEQNYRSTKTILAAANGVIANNMNRKVKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW ++ + + + + A+ Sbjct: 311 ---------------------LW------TENDEGQKIYHYQAMSEHDE--------AQF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I + + + D +L R + ++ + I+ Sbjct: 336 VARKIKEAVDSGKR---------KYSDFAILYRTNAQSRVMEEVL----LKSNINYTIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKDL+A R I +Q+DD+S ++ P + K+ +++ Sbjct: 383 GIKFYDRKEIKDLLAYLRLIANQDDDISLARIVNVPKRGVGATSVDKVANYGNVHDISIF 442 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + I L + + S + +L R+ Sbjct: 443 KALDEVELMGLTGKATKALRDFQSMISNLAQMQDYMSVTELVEQVLERTGYREALKVEKT 502 Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMT 576 E + +DEFL+ T E+ + SL +++L K + +V +MT Sbjct: 503 IEAQSRLENIDEFLSVTKTFEEASEDKSLVAFLTDLALVADIDKLDDEEEEENEQVILMT 562 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE PVVFL+ VF H Sbjct: 563 LHSAKGLEFPVVFLMGMEEGVFPHSRSL-------------------------------- 590 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 + + EE RL YVG+TRA +L + + K+N + + Sbjct: 591 --FEDNEMEEERRLAYVGITRAEQELYLLNAQMRTLFGKTNVNPKSRFI-------GEIP 641 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + + A S R+ + + Sbjct: 642 SELVESLNEAMRKPAAGRSGASASPFAARRQAAVAK 677 >gi|253734985|ref|ZP_04869150.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus TCH130] gi|253727167|gb|EES95896.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus TCH130] Length = 730 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 231/711 (32%), Gaps = 128/711 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK + Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + + + + Y+ +N LDF+DLI+ T +L ++ Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L F + L VGD QSIY Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + + I L ++RST IL +V + Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAAHEVIKNNSERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + N ++ + + A Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +D+ +L R + ++ + Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R I + DD+S ++ P + K+ +++ Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + G+SK + + I LI +F H+ +L R+ Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ E+N+ Q LI+ L + N V +MT+H+ Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H IK Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 +E R+ YV +TRA + L I ++ + + + Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636 >gi|225388641|ref|ZP_03758365.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme DSM 15981] gi|225045317|gb|EEG55563.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme DSM 15981] Length = 769 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 121/756 (16%), Positives = 246/756 (32%), Gaps = 137/756 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L Sbjct: 18 GAGSGKTRVLTHRVAYLIEEKEVNPWNIMAITFTNKAAGEMRERVDKLVGFGAESIWVST 77 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L + + + + + +K+ K + ++++R + + Sbjct: 78 FHSSCVRILRRHIEALGYSTSFSIYDTDDQRTLMKQVFKTLDVDTKQLKERGALSAISSA 137 Query: 123 TLASL---------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + + Y++ KKN +DF+DLI+ T +L + Sbjct: 138 KDKLIGPEEFLLNATGDFRQRRIGEIYQEYQKQLKKNNAMDFDDLIVKTVELFQNNPD-- 195 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I++DE QDT+L Q+++I L + + L VGD+ QSIY Sbjct: 196 -VLSYYQERFKYIMVDEYQDTNLAQFKLISLLAAKY----------KNLCVVGDDDQSIY 244 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA + +L + +I+L ++RST +IL + V + Sbjct: 245 KFRGANIENILNFEDAFP--------GARVIKLEQNYRSTQNILNAANGVIRHNRGRKDK 296 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + + + ++ + A Sbjct: 297 T---------------------LW-------TANSEGTLVHFKQFENARDE-------AD 321 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I + +D VL R + L+ Y + Sbjct: 322 YVARQIRD-------------SGFSYQDQAVLYRTNAQSRLLEER----CIYYNVPYRLV 364 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 IKD++A R I + DDLS + ++ P + ++ ++ Sbjct: 365 GGVNFYQRKEIKDILAYLRTIANGVDDLSVLRIINVPKRGIGATTMGRVTIFASEHGMSL 424 Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFIS 519 Y+ ++ +K + + I ++ + D IL RQ+ + Sbjct: 425 YDALKAARQVPGLGKAAAKIEAFVGQIDSFKVRANSEDFTIQDLIEGILDETGYRQELEA 484 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 E ++ ++E +N + EQ + + SL E + ++ + N V +M Sbjct: 485 EGEIESQTRLENIEELVNKAVSYEQDSEHPSLDEFLEQVALVADIDNMD--ESENRVTLM 542 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P V+LV +F Sbjct: 543 TLHSAKGLEFPKVYLVGMEDGLFPSMMS-------------------------------- 570 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 I KS EE RL YVG+TRA ++L++ ++ V + + Sbjct: 571 ITADDKSEIEEERRLCYVGITRAREELVMTSARQRMVNGETRYSKPSQFVEELPASAVEF 630 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731 +++ S + T ++++ Sbjct: 631 DRLEPALSGYGGFGGGSGSAGGSGRKTDAYADDSLP 666 >gi|167766232|ref|ZP_02438285.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1] gi|167712059|gb|EDS22638.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1] gi|291559884|emb|CBL38684.1| ATP-dependent DNA helicase PcrA [butyrate-producing bacterium SSC/2] Length = 733 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 101/571 (17%), Positives = 183/571 (32%), Gaps = 114/571 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K N LDF+DLI T +L + + + +I++DE QDT+ Sbjct: 169 AQIYKEYQKQLKANNALDFDDLIFKTVELFQFHPE---VLDYYQERFRYIMVDEYQDTNT 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ++++ L + + L VGD+ QSIY F GA K +L + + + Sbjct: 226 IQFQLVSMLARKY----------QNLCVVGDDDQSIYKFRGANVKNILNFENVFPEAV-- 273 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I+L ++RST +IL ++V + + L Sbjct: 274 ------TIKLEQNYRSTKNILNAANEVIKHNKGRKTKK---------------------L 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + Y + AR+I + I ++ Sbjct: 307 W-------TENEEGDLIEFHQYGTEYEE-------ARKIIHEIEDLSKEG---------- 342 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 K++ +L R + + I +KD+++ + + + Sbjct: 343 YDYKNMAILYRTNAQSRVFEESF----MIKNIPYRIVGGTNFYQRKEVKDILSYLKVVDN 398 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKFQHV 484 DDL+ ++ P I KI + + + K Sbjct: 399 GLDDLAVRRIINVPRRGIGAATIEKINVYAVEHNISFLDACFSADSIDTLGNAKKKINGF 458 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 I E Q S + F I + E + ++E LN + EQ Sbjct: 459 ADLIREFRRKMQEGSLEELFKYITDETGYIANLKAEETEEAEGRIENINELLNKVVIYEQ 518 Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++L EL+ E+ + N V +MT+H+AKGLE P VF+ +F Sbjct: 519 EAEEANLSELLEEIALVADIDN--LEDSDNRVVLMTLHSAKGLEFPYVFICGMEDGIFPS 576 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + ++ RL YVG+TRA Sbjct: 577 YMTVMSEDDDDMEEE--------------------------------RRLCYVGITRAKK 604 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 +L + + ++ + + Sbjct: 605 KLYLSAAKRRMMQGRTQFNKVSRFIDEIPEQ 635 >gi|125975357|ref|YP_001039267.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC 27405] gi|256005497|ref|ZP_05430459.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360] gi|281419317|ref|ZP_06250332.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20] gi|125715582|gb|ABN54074.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC 27405] gi|255990552|gb|EEU00672.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360] gi|281406937|gb|EFB37200.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20] gi|316939472|gb|ADU73506.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 1313] Length = 741 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 104/626 (16%), Positives = 201/626 (32%), Gaps = 99/626 (15%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V + + ++ L + Sbjct: 27 GAGSGKTKVLTHRIAYLIKEKNVHPASILAITFTNKAAREMRERIDRLVEDVSDSIWVST 86 Query: 66 FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + KN + + + +K+ LK+ + + Sbjct: 87 FHSMCVRILRRDIEKIDYDKNFVIFDYADQQNVVKDCLKELNLSDKNFPPKSILEMIGRA 146 Query: 111 RDRFNTYKMFKSTLA-SLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +D T + + + + Y++ K+N LDF+D+I+ T L Sbjct: 147 KDELITPDSYLKMYSGDFRMEKIARVYELYQKKLKQNNALDFDDIIMLTIKLFLDNPE-- 204 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + ++ +IL+DE QDT+ Q+ ++ L + + R L VGD+ QSIY Sbjct: 205 -VLNYYQRKFKYILVDEYQDTNTAQYSLVSLLAQGY----------RNLCVVGDDDQSIY 253 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA + +L ++ + +I+L ++RST IL + V + Sbjct: 254 GWRGANIRNILDFEKEF--------KDAKVIKLEQNYRSTQIILDAANHVIKNNVGRKAK 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW + + + + A Sbjct: 306 R---------------------LW-------TNNKGGDGIRYLECLNEHEE-------AY 330 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I + KD VL R + +I IS Sbjct: 331 FVASEIKRLCREQNR---------SYKDFAVLYRINAMSRVIEDEL----MREGISYKIF 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 D IKD++A R I + D++S ++ P I ++ Sbjct: 378 GGLRFYDRKEIKDVIAYLRVIQNPSDNISLKRIINEPKRGIGNATIDTAERLANERGVSI 437 Query: 467 Y-----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + SK + + I+ L + + + +L + + Sbjct: 438 FSIISSAAEIPELARASSKLEKFVSLINSLRAQSMVMTASEMIEEVLERTGILEAYRQEN 497 Query: 522 GNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E + + E L+ + E ++ SL + ++ + N V +MT+ Sbjct: 498 TLEAQSRIENIKELLSVAIEFENESEEKSLTDFLAHVSLVSDVDTMD--ENSEYVALMTL 555 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHI 603 H+AKGLE PVVFLV +F Sbjct: 556 HSAKGLEFPVVFLVGMEEGIFPGYRS 581 >gi|302670353|ref|YP_003830313.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316] gi|302394826|gb|ADL33731.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316] Length = 847 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 118/730 (16%), Positives = 213/730 (29%), Gaps = 130/730 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + Sbjct: 27 GAGSGKTRVLTHRVAYLIDECNVNPWNIMAITFTNKAAGEMRERVDKIVGFGAESIWVST 86 Query: 66 FSLLSSFFL------------------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107 F L T K+I + + + ++ S + Sbjct: 87 FHSSCVRILRRYADKLGFSNNFTIYDTDDSKTLMKDICKKYQLETTQLKLRQIMSSISKC 146 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 Y + Y+ A KKN +DF+DLI+ T +L K Sbjct: 147 KDNLVSPEEYALATQNDFIKAKISKAYLEYQAALKKNNAMDFDDLIMKTVELFK---ACP 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I++DE QDT+ Q+E+IR L + + L VGD+ QSIY Sbjct: 204 EVLDSYQERFRYIMVDEYQDTNNAQFELIRLLADKY----------HNLCVVGDDDQSIY 253 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA + +L +++ ++I+L ++RST IL + V + Sbjct: 254 RFRGANIRNILDFEKVYP--------DATVIKLEQNYRSTQQILDAANAVIHNNRGRKDK 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + N + + + + A Sbjct: 306 A---------------------LW-------TDEKNGEFVKLKQFDTAYDE-------AE 330 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 IA I + + + VL R + LI I Sbjct: 331 FIAGDIGKLKRNG---------KLSYDECAVLYRTNAQSRLIEERF----VHEGIPYDIV 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 IKDL+A + I + DD++ ++ P I + + Sbjct: 378 GGVNFYSRREIKDLLAYLKTIDNGSDDIAVKRIINVPKRGIGATTIDYVQNYADERKISF 437 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--- 518 Y+ + + K + + I + S D ++ Sbjct: 438 YDALCEADQIMAVSRSAGKLKDFVTMIRAFRTKMKTYSLEDLLKDVIDTVGYMNYLRTLD 497 Query: 519 ---SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRI 574 N+ +DE ++ E+N L LE+ ++ +V + Sbjct: 498 EDDDSEDNDRAQNVDELISKIASYEENEEVEQPTLSGFLEEVALVADIDRIGEDNEKVLL 557 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H+AKGLE V+L VF ++ Sbjct: 558 MTLHSAKGLEFEHVYLAGMEEGVFPS------------------------------YMTL 587 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + EE RL YVG+TRA L +C ++ V + N Sbjct: 588 QNEDSDPEGIEEERRLAYVGITRAKKHLTLCAARRRMVRGETMYNRLSRFVTEIPDNLLD 647 Query: 695 VKKIKLTNSI 704 Sbjct: 648 KSGASSEKPA 657 >gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 724 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 123/695 (17%), Positives = 224/695 (32%), Gaps = 137/695 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V N + ++ Q L + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKHVVPWNILAITFTNKAAREMRERVQALLGGAAEDVWIST 91 Query: 66 FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106 F + L T + + K I+ + I+ K + + L Sbjct: 92 FHSMCVRILRRDIDRIGINRNFSILDPTDQLSVIKAILKEKNIDPKKFEPRTILGTISGA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + K +++ + + Y++ +N LDF+DLI+ T L + Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVSDVYQEYQQRLLRNHSLDFDDLIMTTLQLFDR---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I IDE QDT+ Q+ +++ L E F + + AVGD QSI Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL ++V N + Sbjct: 257 YRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + ++ + + A Sbjct: 309 KR---------------------LW-------TENPEGKPITYYEAMNEADE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I I + + D VL R + +I + I Sbjct: 334 QFVAGRIQEAIESGAR---------RYSDFAVLYRTNAQSRVIEEML----LKANIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DDLS + ++ P I K+ + Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E + + + + + ++ S + +L R + Sbjct: 441 LFEALGELEMIGLSAKATGALAAFRGQLEQWTQLQEYVSVTELVEEVLDKSGYRDMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573 E + LDEFL+ T E + SL +++L + + V Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENASDDKSLIAFLTDLALISDLDELNGNDQTEEGDAVV 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ +F H Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLDDEDEMEEE-------------------- 600 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 RL YVG+TRA ++L++ Sbjct: 601 --------------RRLAYVGITRAEEELVLTSAQ 621 >gi|302037409|ref|YP_003797731.1| hypothetical protein NIDE2086 [Candidatus Nitrospira defluvii] gi|300605473|emb|CBK41806.1| conserved protein of unknown function, putative ATP-dependent nuclease, subunit A [Candidatus Nitrospira defluvii] Length = 1128 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 141/925 (15%), Positives = 302/925 (32%), Gaps = 62/925 (6%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK------NIITQEINKK 92 + +L + ++ + L + + ++ +++ Sbjct: 238 RKAQAERLLARYDRPKRRKIELMLAAVADLFALLLAEGLGAVRSFSGESQELLLKDLGAA 297 Query: 93 SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 +E ++ + +I R + L L ++ + L F+ L Sbjct: 298 PTGWEEDDYEAVESLQRIAKRLLRVD-HELLQNLLALLSPFVQLVRKSFLDSGWLTFDGL 356 Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE----DFFVGKN 208 + LL+ IR ++ ++ +L+DE QDT +Q+E++ L E + Sbjct: 357 VGKARTLLRDHP---PIREQLKRDYRALLVDEFQDTDPVQYEIVLYLAERPGTQAGSWRE 413 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 T LF VGD KQSIY+F A+ + + G EL +FRS A Sbjct: 414 TELESGKLFIVGDPKQSIYAFRRADIEAFDHVVDRLE------GSGALRCELATNFRSHA 467 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 +L +V+ VF+ AQ + + + +R SQ + + Sbjct: 468 QVLDLVNGVFNRLLVAQPAIQPPNVPLTVQPNRS-------------SQFRNPGVELRLV 514 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIG--TDTIFSNGKKRVIQAKDILVLVRKRKDT 386 + L ++ + A +IA +S ++ + G + ++ I +L RK Sbjct: 515 ASEDDGELDSAAATRVEAEQIALMVSGLLRPAGQGGEARGPENGLRPGHIALLFRKLTQA 574 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 R + I+ + + + DL+ + R + + D ++ V +L+S + Sbjct: 575 EHYLEALR----RHGIAYIIDGEKHFYRRQEVIDLVNILRCVDNPHDRIALVGLLRSAVG 630 Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 + + + + E + +++ + + + L A C + L Sbjct: 631 GLPDSALVSLQERAALDYRAVERLADWSSSHAEPLRRLYGRLARLHEQAPRCPLPEVLDL 690 Query: 507 ILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565 I + + G + + L + +L + + + Sbjct: 691 IFAQLPVLELAATSLHGEQAVANLFKVRQMAADLADRPNLTLNGFVELMLERLTEQPEEA 750 Query: 566 SANH-----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 + + VR++T+H AKGLE P+V L + + + I + Sbjct: 751 ESALSEDTLDAVRVLTIHKAKGLEFPLVILAGLHHGDGAGRGPARPLIWHDWSTGVQGLD 810 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680 + +V+ + + Q E RL YVGMTRA + L++ + + Sbjct: 811 LGDRCSLGAVLVA---EKARTREQAERRRLFYVGMTRARECLVLSGALPRRRVRGALLEL 867 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 + E+ + I + + + + + E + Sbjct: 868 LEEAAGAELGRAEQ-QDIPVGAVGLRQIVLQGDDRPPARQRERPVELEGAAMDRSFSERW 926 Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQVIFTL 796 K +EP +++PS K E + G I+H+LLQ Sbjct: 927 MLRDRNWKAQRSEPLMVSPSDFIQKPAPASERETGRVRRVTPGKTVGTIVHRLLQYWDFT 986 Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-----SEVSV 851 + + + + + + ++ + LL + A EV Sbjct: 987 ADVASQVALIDHTSLALDEPDTVMQEAVIEEVRDLLRTFAQSAAYDRLRRATVIGREVPF 1046 Query: 852 SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911 N I+ G ID + ++I +YKT ++ + Q +Y + Sbjct: 1047 LVPWN--GGRQIMEGVIDLLYRIDGALWIADYKTDMIPADQVAARAELYREQARLYRAAV 1104 Query: 912 KDSYPNKSLVCL-LIYVSEPKVFII 935 + S + + I++ + Sbjct: 1105 EQSL-GEPVTGFEFIFLRHGVAVTV 1128 >gi|291521009|emb|CBK79302.1| ATP-dependent DNA helicase PcrA [Coprococcus catus GD/7] Length = 768 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 125/737 (16%), Positives = 233/737 (31%), Gaps = 135/737 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ + Sbjct: 27 GAGSGKTRVLTHRIAYLIDECQVNPWNILAITFTNKAAGEMRERVDQIVDFGAEDIWVST 86 Query: 66 FSL--------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFI 108 F F QK +I +++N + KE+ Sbjct: 87 FHSTCVRILRRYIDRLGYDRSFTIYDGDDQKTVIKEVCKKLNIDTKIYKER--TLLSAIS 144 Query: 109 KIRDRF---NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 +D Y + + + Y++ + N LDF+DL+ T +L K Sbjct: 145 SAKDEMIGPKEYLLRSEGDYARQRIAQVYEEYQKRLRSNNALDFDDLLFKTVELFKTD-- 202 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 A + +I++DE QDT+ +Q++ + L + R L VGD+ QS Sbjct: 203 -AEVLNYYQDRFKYIMVDEYQDTNTVQFQFVSLLAAKY----------RNLCVVGDDDQS 251 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F GA +L ++ +I+L ++RST IL + V + + Sbjct: 252 IYKFRGANIHNILDFEKTFP--------DAKVIKLEQNYRSTKTILNAANGVIHHNQGRK 303 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + LW + Y + Sbjct: 304 DKT---------------------LW-------TDNEQGVPIALNQYQTEYEE------- 328 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A I I+ ++ + KD VL R + ++ I Sbjct: 329 AMGIVNDIAA---------KTERHEAEYKDFAVLYRTNAQSRVLEEKF----VTRNIPYR 375 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464 IKD++A + I + +DD++ ++ P + K Sbjct: 376 VVGGVNFYQRKEIKDILAYLKIINNGQDDVAVRRVVNVPKRGIGATTVTKAAEYADQWGI 435 Query: 465 TVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 ++YE ++ +K + I A++ S + + +L ++ + Sbjct: 436 SLYEAFKQVDGIPGLGRAAAKINGFVNLIQVFRTKAEYMSLAELYDEVLEDTGYLKELQA 495 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 +E I+ LDE N + E+ SL EL+ ++ + N+V +M Sbjct: 496 EQTDEATTRIENLDELRNKIVAYEEETEQPSLNELLEQIALVADVDNMDD--SDNKVILM 553 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P V+L +F M +NDDP Sbjct: 554 TLHSAKGLEFPYVYLCGMEDGLFPS-------YMTIVNDDPM------------------ 588 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 EE RL YVG+TRA +L + ++ V + Sbjct: 589 -------EIEEERRLCYVGITRAMKKLTLSYAMCRMMHGQTQYNKISRFVKEIPPQLIGG 641 Query: 696 KKIKLTNSINKDEWIAY 712 + ++ + + Sbjct: 642 SLPRERFPRKAEDDLPW 658 >gi|323138754|ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] gi|322396001|gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] Length = 1130 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 161/928 (17%), Positives = 301/928 (32%), Gaps = 76/928 (8%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER-FS 67 + V+ + + ++ N L ++ + Sbjct: 219 AAADFAGFMDGAAAAEPETVTIVERLAEMATALANGPDPATPAGLVHLLTSRPHPDLCTK 278 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPD-LKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 + +K ++K D L + + + A Sbjct: 279 AGAFASYRRKGKWAAAAKQAGLSKADGDRLNDAAETHYTACCDAWAALAQAAAGHALAAL 338 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + A+ + Y + K+ + LDF+DLI DLL+ D +R + Q H+L+DE Q Sbjct: 339 IDEARPILQRYRDHKRASAQLDFDDLIFAARDLLRDYDA---VRRALGQRFVHVLVDEFQ 395 Query: 187 DTSLIQWEVIRSLTEDFFVGKNT----HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DT Q E+ L + G + P LF VGD KQ+IY F GA+ ++ + Sbjct: 396 DTDPQQTEIFWRLCGEPVDGDDDWTRFRIRPGALFLVGDPKQAIYRFRGADVGTYVQARD 455 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + +A + ++ + +FRS A ILT V++ F +A Sbjct: 456 AFRAQAPGS-----LLSISTNFRSCASILTFVNERFEAVLSA-----------------D 493 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 GQ G L + + E A IA + +I I Sbjct: 494 GQPGFTALDPFHDDRGGPCVAALDIAVADENGKATAEQQRDAEAEAIAELCARLIENHPI 553 Query: 363 FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 +G +R Q DI +L + I V L I+D Sbjct: 554 IDRRSGAERACQPGDIALLAPTGAELWRYEEALE----RRGIPVATQAGKGLFRRQEIQD 609 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 L+AL R + + D L+ +L+ PL +E+D+ I +E + I + Sbjct: 610 LIALTRVLADRRDTLALGALLRGPLVGLTEEDLLDIIWGLPRSEKQPDRIPRLDLGIDPA 669 Query: 481 F------QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDE 531 + VI+ + L + H + + + R + R + +D Sbjct: 670 VIAHPLTREVIERLQSLSRRGNSTTAHALLSQAVDVMRVRPLLLERHRGQAERALANVDL 729 Query: 532 FLNFTLRNEQNSYSSL-QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 +L+ + + + + S ++ A V + T+H AKGLE P+V Sbjct: 730 YLSLSTGYAVRGLRAFAEAMTSAWSDEARAVEGRPDAQEEAVALFTMHAAKGLEWPIVIP 789 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 V+T + V + + + D + P + K+ E RL Sbjct: 790 VNTMTGVIAAESA--------VIDRQTETFYCPVLGVTPEGYETARQAEKEELDRERIRL 841 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 YV TRA + L++ + ++ W +V S + + +L Sbjct: 842 WYVAATRARELLVL-----PRLDTTPSKSAWIGLVDLSLADLPGLDVSRLPAGRTAASAG 896 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 T E + + + + E L + D + L Sbjct: 897 EDNTQTRASFAAEAETIAAAQTRLTWLAPSRDENAAGTVLREEEAALWTGSAD-DQRPEL 955 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK---------EY 821 E+ RGLI+HKL++ + T + + +T + Sbjct: 956 EAAALVQGGRERGLILHKLMEEVLTGETAEAEAALTERAADLIRALGQAPVADPATGLSA 1015 Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN--IF 879 + L + R L P + +E V + + +G D +++ + + Sbjct: 1016 EELAACVVRTLALPDIAAL-RPGLLAEFPVYAAQSSDGVETATAGIADALTVGEDGRPVV 1074 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 + ++K+ + + AQ+S Y Sbjct: 1075 VVDWKSDVNP---EAQTLDHYRAQVSAY 1099 >gi|253680774|ref|ZP_04861577.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873] gi|253562623|gb|EES92069.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873] Length = 761 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 108/580 (18%), Positives = 195/580 (33%), Gaps = 116/580 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K + LDF+DLI T +L KK I + +I++DE QDT+ Sbjct: 170 ADVYLLYQKKLKNSNALDFDDLIFKTVELFKKNPD---ILEFYQNKFKYIMVDEYQDTNK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+++++ L S+ R +F VGD+ Q IY + GA+ K +L + + Sbjct: 227 TQYQLVKMLA----------SAHRNIFVVGDDDQCIYQWRGADIKNILDFEGDYPE---- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RS A+IL + V + Sbjct: 273 ----AKVIKLEENYRSKANILNAANTVIKHNSQRKNKVL--------------------- 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + ++ + + + A I +I + Sbjct: 308 -------RTQNSDGEKIKIYRAYSDIDEGI-------FTANEIKRLIEKENR-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD +L R + + + I D IKD+ A +FI + Sbjct: 346 -SFKDFAILYRTNAQSRMFEDVF----MKRDIPYRIIGGLKFYDRKEIKDITAYLKFINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 +DD+S ++ P I KI + + E I + IS Sbjct: 401 LQDDISLKRIINVPKRAIGAATISKIQEFANYMDECMYSVLLDAENIPGLSKRTISSINK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I+ S + IL + ++ E I+ + E ++ + E Sbjct: 461 FTSLINGFTRTKDKVSVSNLIQEILESTGYMKELKDSNEIEDISRIENIKELVSAAVEFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + SL + ++ + + +MT+H+AKGLE PVVF+V + +F Sbjct: 521 NTSEDKSLSAFLEKITLVSDVDNYD--EDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 S EE RL YVG+TRA Sbjct: 579 G----------------------------------AQSLENFSEMEESRRLCYVGITRAK 604 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +QL + SN ++ + + + + + + K + Sbjct: 605 EQLYMTSASNRKVFGRTVAYSESSFINEISPDLKELVKEE 644 >gi|163815569|ref|ZP_02206942.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759] gi|158449206|gb|EDP26201.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759] Length = 789 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 128/815 (15%), Positives = 257/815 (31%), Gaps = 141/815 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ + ++ + + + V+ +N + + + + Sbjct: 40 GAGSGKTRVITHRVAYLMDHEGVNPLNILAITFTNKAAREMRDRVDLIVGEGADRVWVST 99 Query: 66 FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQ------------DEFIKI 110 F L L + +KN + + + +K LK Q E K Sbjct: 100 FHSLCVRILRRYADKIGYEKNFDIYDSDDQKSTVKSILKDFQIDPKRYPEKMFMSEISKA 159 Query: 111 RDRFNTYKM-FKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++++ + + A + Y+ KKN +DF+DLI T +L + Sbjct: 160 KEKYMSPDEFARRNAADYAATKVAEVYTEYQGRLKKNNAMDFDDLIYKTVELFEHNPD-- 217 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I++DE QDT+ IQ+ +++ L + R L VGD+ QSIY Sbjct: 218 -VLDTYQNRFRYIMVDEYQDTNHIQFLMVKMLARKY----------RNLCVVGDDDQSIY 266 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA +L ++ + +I+L ++RS +IL + V E + Sbjct: 267 KFRGANITNILNFEKEYE--------DAKVIKLEQNYRSCGNILAAANAVIQHNEGRKDK 318 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW Q ++ S+ + Sbjct: 319 A---------------------LW-------TDQDAGEKISFDQCDTEYAEGD------- 343 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I ++ + +DI +L R + + I Sbjct: 344 LVASRIKTLVRQG----------VGYRDIAILYRTNAQSR----VLGEKMVYANIPYRVY 389 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 IKD++A + I + D+L F ++ P E + K+ ++ Sbjct: 390 GGTNFYARKEIKDVLAYLKVINNTTDNLYFRRVVNVPKRGIGEASLSKVESFADAYGLSM 449 Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFIS 519 + + A K + I + Q S + IL + I+ Sbjct: 450 MDAAARADEIPGMAVKTSGKIKQFATLIQSFRDMLQDGESLDAVYDRILEDTGYESELIA 509 Query: 520 RFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 E ++ +DE N + ++N + L E + E+ S + N+V++M Sbjct: 510 EHTEESMTRLENIDELRNKVVEFVDENEEAGLSEFLEEIALVSDLDSM--SEDDNQVKLM 567 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P VF+ +VF Sbjct: 568 TLHSAKGLEFPYVFICGMEDRVFPSGMALNSDDPD------------------------- 602 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------SNEKKSNQRTWYDMVYDS 688 EE RL YVG+TRA +L + S++ R ++++ Sbjct: 603 -------ALEEERRLCYVGITRAMKKLYLSAARERMMHGNRISSDVSRFIREIPPLLFEH 655 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + K + T S+++ + + + + K+ + Sbjct: 656 EADMRNMAKRRETESVDRYNRGDLYSDSSYGSSYNYKPRTPGKEYGQKNPYSSYARQKSY 715 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783 + + + + + + G Sbjct: 716 GQPSTQPAFGKAFVVSASGKPDYEVGDRVRHIKFG 750 >gi|229817712|ref|ZP_04447994.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM 20098] gi|229785501|gb|EEP21615.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM 20098] Length = 889 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 121/732 (16%), Positives = 222/732 (30%), Gaps = 124/732 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + A L+ + Sbjct: 94 AAAEMRERLTALIGPVAQRMWVSTFHSACVRILRRDGK-----ALGLKSGFSIYDSADS- 147 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L T+ K + I + D K +L + + F Sbjct: 148 ERLVKIIATEFNVDVKRYTPRSILGRISDYKNQLIGWRAQLAAYAPDFKPGSRNYRISKF 207 Query: 127 L---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + A YE +DF+DLI+ T +LL+ + + +IL+D Sbjct: 208 DNVEELYAIIYAEYEHRLAMANAVDFDDLIVRTVELLRDHPD---VADYYRHKFRYILVD 264 Query: 184 EVQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ +IR L P + VGD QSIY+F GA+ + Sbjct: 265 EYQDTNHAQYVLIRELAGVDAGETPAPTATAAGRQGPAWVTVVGDSDQSIYAFRGADIRN 324 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + + I L ++RST IL + V S E + Sbjct: 325 IQDFEEDFPN--------AKTILLEQNYRSTQTILDAANAVISHNEGRKPKK-------- 368 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW V + + + A A +A I+ + Sbjct: 369 -------------LWTAV-------GKGEPIVGYAADN-------AQQEAVWVASEIARL 401 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 D + D+ ++ R + + + + + Sbjct: 402 HAED---------GVAYSDMAIMYRANAQSRSLEEAL----INAGLPYQLIGGTKFYERK 448 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS-EDDIFKICTQRHETETVYEY--IQKF 473 IKD +A + IL+ DD++ +L P + + R + ++ + Sbjct: 449 EIKDALAYLQAILNPADDVNLRRILNVPKRGLGARAESIVLEYARERGTSFFDALMHMEQ 508 Query: 474 ANCGISKFQHVIKYIHELI------HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 ++ +K +L+ A P D +L ++ + Sbjct: 509 IEDMPTRTAKGLKAFRDLMASMSAFARANINKPSDIVAEVLAKSGLLEELQKSVDPQDQS 568 Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKG 582 ++ L + + EQN+ +L + + + +V +MT+HTAKG Sbjct: 569 RVENLSQLQSTAAEYEQNTPDATLGGFLETTALVADSDQLPNGNEDSGKVTMMTLHTAKG 628 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H + Sbjct: 629 LEYPVVFLTGLEQGTFPHSRSL----------------------------------EDTA 654 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YVG+TRA +L I + + + ++N+ + + K+ + + Sbjct: 655 ELSEERRLAYVGITRAKRRLYITRAAVRAQWGQANEMLPSQFLEEIPDELIDWKRRETGS 714 Query: 703 SINKDEWIAYEW 714 + W + Sbjct: 715 ERMRTGWGDGDE 726 >gi|323484921|ref|ZP_08090276.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163] gi|323401802|gb|EGA94145.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163] Length = 813 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 113/722 (15%), Positives = 227/722 (31%), Gaps = 131/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ + Sbjct: 27 GAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEMRERVDKIVGFGAESIWVST 86 Query: 66 FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKI 110 F S+ F Q+ ++ Q + D K+ +++ Sbjct: 87 FHSSCVRILRRHIEYLGYSTNFTIYDGDDQRTLMKQIFKRLDVDTKQFKERAVLSRISSA 146 Query: 111 RDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +D T + F+ + Y++ KKN LDF+DLI+ T +L + Sbjct: 147 KDDMITPEEFELNAGGDFREKKVAQIYKEYQKELKKNNALDFDDLIVKTVELFQN---VP 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I++DE QDT+++Q++++ L + R + VGD+ QSIY Sbjct: 204 DVLNYYQERFRYIMVDEYQDTNMVQFKLVDLLAGKY----------RNICVVGDDDQSIY 253 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA + +L ++ +I+L ++RST +IL + V + Sbjct: 254 KFRGANIENILSFEKAF--------SGAKVIKLEQNYRSTQNILNAANGVIRNNRGRKDK 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + + V+ + + + A Sbjct: 306 TLWTAN---------DEGNLVRFLQFDTAYEE--------------------------AE 330 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I I ++ + D VL R + L+ Y I Sbjct: 331 AIVKDIRR---------EKEETGREYSDFAVLYRTNAQSRLLEEK----CILYSIPYRLV 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 IKD++ + I + +DDL+ ++ P + K+ + Sbjct: 378 GGVNFYQRKEIKDILCYLKTIANGQDDLAVQRIINVPKRGIGATSVGKVTIFASANGMSF 437 Query: 467 YEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 Y+ + + K + I + S + +L +++ + Sbjct: 438 YDALLRVRGITTLGKAADKIGVFTEQIEDFKARLPKMSIKELIEEVLENTGYKKEIEAEG 497 Query: 522 GNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E + ++E +N + E +L + E+ + N + +MT+ Sbjct: 498 EIESETRLQNIEELINKAVSYSENEENPTLDGFLEEVALVADVDNMD--ESENRIVLMTL 555 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P V+L +F I Sbjct: 556 HSAKGLEFPYVYLSGLEDGLFPSSMS--------------------------------IM 583 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 K EE RL YVG+TRA ++L + ++ V + ++ Sbjct: 584 SDDKDAVEEERRLCYVGITRAREKLTLTMARQRMTNGETRYSRASRFVEEIPAWLLEQEE 643 Query: 698 IK 699 Sbjct: 644 QP 645 >gi|110637958|ref|YP_678165.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406] gi|110280639|gb|ABG58825.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406] Length = 749 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 106/656 (16%), Positives = 218/656 (33%), Gaps = 113/656 (17%) Query: 96 LKEKLKKSQDEFIKIRDRFNTYK-MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 + ++ +++ I ++ M A L Y+E + +DF+DL+ Sbjct: 138 VFNRISAAKNRLISYKEYIANPNYMADDRAALRPEMGKLYQMYQERLIRAGAMDFDDLLF 197 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 T L + + K + +I++DE QDT++ Q+ + + L R Sbjct: 198 YTYKLFNEHPD---VLNKYQHKFKYIMVDEFQDTNIAQYNITKKLAAM----------NR 244 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + VGD+ QSIY+F GA+ + +L ++ + +++L ++RST I+ Sbjct: 245 NICVVGDDAQSIYAFRGADIQNILNFEKDYPE--------LKVLKLEQNYRSTKTIVEAA 296 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + V + + +W ++ + + + D Sbjct: 297 NNVITKNKAQLKK---------------------DVW------TSNESGEKIHVYRAASD 329 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 + R IA TI F N ++ KD +L R + R Sbjct: 330 NEEG--------RIIAQTI---------FENKMNMQLRNKDFAILYRTNSQSRSFEEALR 372 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 L I+ IKD++A RF+L+ +D+ SF ++ P + I Sbjct: 373 KL----NINYKVVGGMSFYQRKEIKDVLAYLRFVLNDQDEQSFRRIVNFPKRGIGDTTIA 428 Query: 455 KIC-TQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILG 509 K+ + TV++ + + + + + I +A + I Sbjct: 429 KLFVIADEQGTTVWDILCNVKSIMTGRLVPVIEGFVDLIKSYKILANTKDAFEAANEIAK 488 Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 ++ E + + E LN + L S L++ Sbjct: 489 QSGLLKELYEDKTVEGIARYENVQELLNGIKEFVDRPDQEDKSLGSYLQEISLLTDTEKD 548 Query: 567 -ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + + V +MT+H+AKGLE VF+V +F + Sbjct: 549 KEDKDSVTLMTIHSAKGLEFNQVFVVGIEEDLFPSAMMLNS------------------- 589 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 ++ EE RL YV +TRA +L + ++ + + + Sbjct: 590 ---------------RADLEEERRLFYVAITRAEKRLTLSFATSRYRFGQLKSCSPSRFL 634 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + ++ I + +++ A+ ++ + + + K Sbjct: 635 EEIDPRHLQMTSITANSIGSQESGPAFSGIKPKTAAATVQVKAKVAPAYTPSEDFK 690 >gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] gi|39576917|emb|CAE78146.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] Length = 762 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 112/584 (19%), Positives = 200/584 (34%), Gaps = 115/584 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE KK LDF+DL++ T DL + + + ++ +I++DE QDT+ I Sbjct: 178 EVYKAYEREMKKANSLDFDDLLLKTYDLFR---MYPDVLQMYQKKFRYIMVDEYQDTNHI 234 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +++ L S+ R L VGDE QSIYS+ GA+ K +L ++ + Sbjct: 235 QYLLVQMLA----------SAHRNLCVVGDEDQSIYSWRGADIKNILDFEKDFR------ 278 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RS+A+I+ V + + G Sbjct: 279 --DAKVIKLEENYRSSANIVNGATAVIKNNSQRKDKTL----------FTSNDPG----- 321 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + +E + R +A TI +M+ Sbjct: 322 --------------------DLIHVREEKNEYEEGRFVAKTIQSMMNEGEG--------- 352 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D + R + ++ R + I + + IKD+++ + ++ Sbjct: 353 SYNDYAIFYRTNAQSRVLEEQLRTM----GIPYRLVGGVRFYERMEIKDMISYLKLSINP 408 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DD++ ++ P + I KI H+ +++E +K K + Sbjct: 409 ADDIALKRIINVPARGIGKTTIEKIEEYAAHKNLSMFEAAEKACEERLFNAGTTGKIRRF 468 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 I + +L AQ +FF ++L + E I+ L+E N + Sbjct: 469 IDLMKDLQQNAQHLKLLEFFAVVLDRTEYLAALKKDESPESQARIENLEELDNAIAQFVQ 528 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E+ S+L + E+ N V +MT+H +KGLE P VF+V +F Sbjct: 529 ERGEESTLISFLEEMALVNDVDSLDQEQ--NSVTMMTLHISKGLEYPYVFVVGLEENLFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 587 SARS--------------------------------AESDNEQDVEEERRLAYVGMTRAR 614 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +L + + + + N K Sbjct: 615 QKLWLTYAKMRRVWGQEQFNPPSRFIKEIPQNLIDFKTSAEAPR 658 >gi|20807099|ref|NP_622270.1| superfamily I DNA/RNA helicase [Thermoanaerobacter tengcongensis MB4] gi|20515591|gb|AAM23874.1| Superfamily I DNA and RNA helicases [Thermoanaerobacter tengcongensis MB4] Length = 713 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 109/567 (19%), Positives = 191/567 (33%), Gaps = 111/567 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 K + Y+ KK LDF+D+II T +L K+ I ++ +I++DE QDT+ Sbjct: 176 KEIYKLYQHKLKKINALDFDDIIIKTIELFKENPE---ILEFYQRKFRYIMVDEYQDTNT 232 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ + L + R L VGD+ QSIY + GA+ + +L ++ Sbjct: 233 PQYYFVNLLAQ----------RHRNLCVVGDDDQSIYGWRGADVRNILNFEKDYP----- 277 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + +I+L ++RST IL + V + S L Sbjct: 278 ---EAKVIKLEQNYRSTKIILEAANHVIDNNVYRKKKS---------------------L 313 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W ++ + + + I + + Sbjct: 314 W-------TQNKEGEKIVLCELENEREEAE-------FVIQEIIKLKERENR-------- 351 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD +L R + +K + D IKD++A R I++ Sbjct: 352 -SFKDFAILYRTNAQSRPFEEALMKVK----VPYKVVGALRFYDRKEIKDILAYLRLIVN 406 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN-CGISKFQHVIKYI 488 DD+SF ++ P I + R + +++ I+ N ++I Sbjct: 407 PYDDISFKRIVNVPRRGIGPATIEALEKVAREKDTSLFFAIEDLKNARNKGSLLQFKQFI 466 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSY 544 +LI S D IL ++ E + L+EFLN E+ + Sbjct: 467 LDLIDKKDAMSVSDLIKYILEQTGYIEELKREESEEAEGRIENLNEFLNAAYEFEESSED 526 Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 SL+ ++ + V +MT+H+AKGLE PVVF+V +F Sbjct: 527 KSLEAFLAGITLVSDIDMAGDI--GESVVLMTLHSAKGLEFPVVFMVGMEEGLFPSYSSF 584 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL YVG+TR+ ++L + Sbjct: 585 ----------------------------------EDDHELEEERRLCYVGITRSKERLYL 610 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S ++ + + Sbjct: 611 TYARQRNLYGRSQYNSYSRFISEIPER 637 >gi|302871914|ref|YP_003840550.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47] gi|302574773|gb|ADL42564.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47] Length = 714 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 109/550 (19%), Positives = 186/550 (33%), Gaps = 114/550 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + ++ DF+DL+ T L + I K + +IL+DE QDT+ Sbjct: 169 DVYKLYNKLLREYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I L++ R + VGD+ QSIYSF GA K +L +++ Sbjct: 226 QFYFIYLLSQ----------KHRNICVVGDDDQSIYSFRGANIKNILEFEKMF------- 268 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + +I+L ++RST IL+ ++V + LW Sbjct: 269 -SEAKVIKLEKNYRSTKTILSAANEVIKNNYYRKSKK---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ S FD + + A +A ++ N+IG+ + Sbjct: 307 -------TDNIDGEKIFLYSAFDEMNE-------AEFVASSVKNLIGSG----------L 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I VL R + Y + + IKD++A R I + Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------TVYEYIQKFANCGISKFQHVI 485 DDLS ++ P + KI E + F K + Sbjct: 399 HDDLSLFRIINVPRRGIGNSTLEKIKVLSEEYGVSAYTVLLERAKFDFDKKTYEKLNSFV 458 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 I EL ++ S L+L + +S E +++ ++ E+ Sbjct: 459 SLIEELKAESENLSVSQTIKLVLDRTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518 Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++Q ++ + +V +MTVH AKGLE VVFL +F Sbjct: 519 NEEPTMQNFLNSITLNSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFP-- 573 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 +V + EE RL YV +TRA Sbjct: 574 -----------------------------LVRAEEPLEAEKELEEERRLCYVAITRAKKL 604 Query: 662 LIICKHSNTS 671 L++ +N Sbjct: 605 LVLTYANNRR 614 >gi|331270358|ref|YP_004396850.1| UvrD/REP helicase [Clostridium botulinum BKT015925] gi|329126908|gb|AEB76853.1| UvrD/REP helicase [Clostridium botulinum BKT015925] Length = 761 Score = 314 bits (804), Expect = 5e-83, Method: Composition-based stats. Identities = 116/638 (18%), Positives = 220/638 (34%), Gaps = 124/638 (19%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKY 132 L ++ + NI ++IN+ ++ K+ K +D I + + + F+ Sbjct: 119 LIKQCMKELNINDKDINE--KEIISKIGKQKDNLITAEEYKKRNERDFRKNK-----IAD 171 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ K + LDF+DLI T +L KK + + +I++DE QDT+ Q Sbjct: 172 VYLLYQKKLKNSNALDFDDLIFKTVELFKKNPD---VLEFYQNKFKYIMVDEYQDTNKTQ 228 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +++++ L S+ R +F VGD+ Q IY + GA+ K +L + + Sbjct: 229 YQLVKMLA----------SAHRNIFVVGDDDQCIYQWRGADIKNILDFEVDYPE------ 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++I+L ++RS A+IL + V + Sbjct: 273 --ATVIKLEENYRSKANILNAANTVIKHNSQRKNKVL----------------------- 307 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + ++ + + + A I +I + Sbjct: 308 -----RTQNSDGEKIKIYRAYSDIDEGI-------FTANEIKRLIKKEDR---------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KD +L R + + + I D IKD+ A +FI + + Sbjct: 347 FKDFAILYRTNAQSRMFEDVF----MKRDIPYRIIGGLKFYDRKEIKDITAYLKFINNLQ 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVI 485 DD+S ++ P + KI + + E I + IS Sbjct: 403 DDISLKRIINVPKRAIGAATVSKIQEFANYMDECMYSVLLDVENIPGLSKRTISSINKFT 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 I+ S + IL + ++ E I+ + E ++ + E Sbjct: 463 SLINGFTRTKDKVSVSNLIQEILESTGYMKELKDSNEIEDISRIENIKELVSAAVEFENT 522 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + SL + ++ + + +MT+H+AKGLE PVVF+V + +F Sbjct: 523 SEDKSLSAFLEKITLVSDVDNYD--EDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFPG- 579 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 S EE RL YVG+TRA +Q Sbjct: 580 ---------------------------------AQSLENFSEMEESRRLCYVGITRAKEQ 606 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 L + S ++ + D + + + + + K + Sbjct: 607 LYMTSASTRKVFGRTVAYSESDFINEISPSLKELVKEE 644 >gi|52079148|ref|YP_077939.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580] gi|52784515|ref|YP_090344.1| PcrA [Bacillus licheniformis ATCC 14580] gi|52002359|gb|AAU22301.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580] gi|52347017|gb|AAU39651.1| PcrA [Bacillus licheniformis ATCC 14580] Length = 739 Score = 314 bits (804), Expect = 5e-83, Method: Composition-based stats. Identities = 119/720 (16%), Positives = 233/720 (32%), Gaps = 134/720 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ +++ Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVESILGPGADDIWIST 91 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110 F + L + I S L ++ Sbjct: 92 FHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKERNIDPKKFDPRSILGSISSA 151 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + ++ T + + Y++ +KN LDF+DLI+ T L + Sbjct: 152 KNELIAPEEYEKTAGGFFEQVVSDVYKDYQKKLRKNQSLDFDDLIMTTIVLFDR---VPE 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ +++ + + F + + VGD QSIY Sbjct: 209 VLEYYQRKFQYIHVDEYQDTNRAQYLLVKKMAQRF----------QNICVVGDSDQSIYR 258 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ S+I L ++RST IL ++V N + + Sbjct: 259 WRGADIANILSFEKDYPN--------ASVILLEQNYRSTKRILNAANEVIQNNSNRKPKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + S+ + + + Sbjct: 311 ---------------------LW-------TENDEGAKISYFRGDNEFGEG-------QF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I ++G+ DI +L R + +I I+ Sbjct: 336 VAGKIRELVGSGKR---------SFSDIAILYRTNAQSRVIEETL----MKANINYNIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKD++A R + + +DD+SF ++ P + KI +++ Sbjct: 383 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGVGATSVDKIAAYADMNGMSLF 442 Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + + + I L ++ ++ S + IL + R+ + Sbjct: 443 EALGQVDFIGLSARAANALDEFRQTIENLTNMQEYLSVTELTEEILEKTEYREMLKAEKS 502 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANH----NEVRI 574 E + +DEFL+ T E Q+ SL +++L + + V + Sbjct: 503 LEAQSRLENIDEFLSVTKNFEQQSEDKSLVAFLTDLALIADIDQLDQKEEETGNQDAVIL 562 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE PVVFL+ VF H Sbjct: 563 MTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEE--------------------- 601 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 RL YVG+TRA ++L + + ++N + + Sbjct: 602 -------------RRLAYVGITRAEEELYLTNARMRTLFGRTNMNPESRFIAEIPEELLD 648 >gi|163789389|ref|ZP_02183828.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7] gi|159875243|gb|EDP69308.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7] Length = 750 Score = 314 bits (803), Expect = 6e-83, Method: Composition-based stats. Identities = 113/708 (15%), Positives = 235/708 (33%), Gaps = 132/708 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAKEMKERVTRLMKEGGSDVWVST 90 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + F + Q+ ++ + + +++ D K+ + E Sbjct: 91 FHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILKERNIDPKKYNPRAILGEISNA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ +T + ++ S + Y+ ++N +DF+DLI+ L K+ + Sbjct: 151 KNELDTPEDYRKRAGSFFEKIVADCYDDYQRELRRNQAVDFDDLIMLAIRLFKESPET-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L E F + L VGD QSIY Sbjct: 209 -LDYYQNKFHYIHVDEYQDTNEAQYTLVNMLAERF----------KNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + + L ++RST IL + V + Sbjct: 258 WRGANMENILNFEKDYP--------DATTVLLEQNYRSTKFILQAANDVIGNNSKRKVKK 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ ++ + S +R Sbjct: 310 ---------------------LW-------TDNHDGEKITYY-------RGQSEGDESRY 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + D VL R + +I I Sbjct: 335 VISKIQEEMKANH---------YNYGDFAVLYRTNAQSRVIEDSL----LKSNIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET--- 465 D I+D++A R I + +D++SF ++ P I K+ T ++ + Sbjct: 382 GHKFYDRKEIRDVLAYLRLIANPDDNMSFERVVNVPKRGIGPGTIEKLRTSSNQYDWSLL 441 Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + I + ++ + + +L + ++ + +L ++ Sbjct: 442 ETALNVSITPISGKAANELEAFGFMMKDLRQMQEYVPVTELVEEVLKRSGYQKSLELERT 501 Query: 523 NE---VIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E ++ + EFL T + E+ SL +++L +EV +MT+ Sbjct: 502 LESETRLENIQEFLTVTQQFEKENTEDKSLLTFLTDLALVSDLDNLE-EEPQSEVTLMTL 560 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H AKGLE P+VFL+ +F Sbjct: 561 HAAKGLEFPIVFLIGLEEGIFPLS----------------------------------RS 586 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 +++ EE RL YVG+TRA +L I + ++ + + Sbjct: 587 MMEEDQLEEERRLAYVGITRAEKKLYITNAYSRVLYGRTQSNSASRFI 634 >gi|315924258|ref|ZP_07920482.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622419|gb|EFV02376.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus ATCC 23263] Length = 736 Score = 314 bits (803), Expect = 6e-83, Method: Composition-based stats. Identities = 116/712 (16%), Positives = 216/712 (30%), Gaps = 134/712 (18%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E + I P + + M + Sbjct: 63 AAGEMRDRIAAMDIPETNRIWMYTFHAMCARIMRMHAK-----------LLGYGDNFVIY 111 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L ++ + ++ ++ + K + D+ +A Sbjct: 112 DTDDQKRLYKQIAKELDLSDKQYPFGYVIGEISAAKEKGMLPNAFDKLAAGDFRLEKVAL 171 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y EA +N +DF+DLI+NT L K++ I Q +IL+DE Q Sbjct: 172 ------FYHRYREALMQNNAMDFDDLILNTLILFKEQPE---ILAGYQQRFKYILVDEYQ 222 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+E++ L R L GD+ QSIY + GA+ + +L ++ Sbjct: 223 DTNHSQYELVNLLAG----------GHRNLCVCGDDDQSIYGWRGADIRNILDFEKDYP- 271 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +++L ++RST IL + V + + + Sbjct: 272 -------DAKVVKLEENYRSTPVILEAANGVIANNTGRKEKN------------------ 306 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ + A IA I + + Sbjct: 307 ---LWTHNPGSEKI--------------AVSAYDQGNEEADAIADEIERLRRDE------ 343 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 D VL R + L I + +KD++ Sbjct: 344 ---AFTYGDCAVLYRTNAQSRLFEEAF----MRRTIPYQLVGGTGFYARMEVKDIVTYLH 396 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGIS 479 +L+ D+L V ++ +P I K+ E + + + Sbjct: 397 VLLNPADNLGTVRIINTPKRGIGGMTIQKLQDFADFKGYSLMDAVLNVEAVPTLSAGIQT 456 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536 K +H + ELI A S ++ A I+ L E ++ Sbjct: 457 KVRHFADMMQELIAAAAEESVAALIKHVIDATGYLTMLEMGKVEKAEARIENLQELISSA 516 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 E+NS + L + LE T + + +V +MT+H AKGLE PVVF+ Sbjct: 517 ADFEKNSDDT--SLTAYLETVALTSETDKYETDEGKVLLMTLHNAKGLEFPVVFMPGMED 574 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + + EE R+ YVG+ Sbjct: 575 GIFPNARSFDDP----------------------------------AQMEEERRICYVGI 600 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 TRA +L + S + + + + + + ++ + +++ + Sbjct: 601 TRAEKKLYLSHASERTVFGRRQPQIASRFLRELPADCIHEEEHRSRDAVISE 652 >gi|229137928|ref|ZP_04266527.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST26] gi|228645585|gb|EEL01818.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST26] Length = 907 Score = 314 bits (803), Expect = 6e-83, Method: Composition-based stats. Identities = 132/748 (17%), Positives = 260/748 (34%), Gaps = 68/748 (9%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67 + +D+ I K L+M P L TL A++ + + Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 208 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120 + + +K+ +++ K+ L+ K K + + M Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175 + L K ++ K+ ++DF DL +L ++ + + + Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAVALQYRN 328 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 + +L+DE QDT+ +Q +I+ +T+D LF VGD KQSIY F AEP Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293 L + + + G K I+L +FRS ++L + +F E + D+ Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ +S + + + ++ + A + AR +A I Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 M+ + + K R +Q +D ++L+R P I + I V + Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465 + + +M + R I + D+ +L+SP+ +++++ + + Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605 Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522 + + K + + A+ S D + G G Sbjct: 606 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665 Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577 + L + + E S+ L + +E+ RA + VRIMT+ Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE PVVF+ G + + +K+ + + K + + Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 +K E R+LYV +TRA ++LI+ + ++ + H++ + Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKE------MEKWLDAREHSEWLLPD 839 Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLE 725 + +WIA H LE Sbjct: 840 HIRAGASCYLDWIAPSLYRHRDSEILLE 867 >gi|307717800|ref|YP_003873332.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192] gi|306531525|gb|ADN01059.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192] Length = 1152 Score = 314 bits (803), Expect = 6e-83, Method: Composition-based stats. Identities = 162/936 (17%), Positives = 313/936 (33%), Gaps = 83/936 (8%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 +W + + + + + L + + + L T Sbjct: 236 MWEVVEAAWDRVRSRREGGSGLVPEVVREWREALDEVASSLKGLRV-DELRDAIDT---- 290 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 + +E+ L + + + +R + + + + E Sbjct: 291 -----LKKELGVGKKPPSSSLSAVAGDLVSLLERR------EEASSLFGVLAEWHGEVER 339 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +L F D++ LLK+ +R + IL+DE QD + +Q +++ L Sbjct: 340 FKKERNLLTFGDVMHLVLTLLKEE---KEVREFYKGRFDAILVDEFQDNNGLQRDLLFLL 396 Query: 200 TEDFFVGKNT-----HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 E + P LF VGDEKQSIY F GA+ L K N Sbjct: 397 AERKGRCGDGVPSFEDLEPGKLFVVGDEKQSIYLFRGADVGVFLDLKER-----ANRSSH 451 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314 ++ LP ++RS +L V+++ + + R G T ++ V Sbjct: 452 GEVMRLPHNYRSEPGLLDAVNRM---AGAFPEEMRGGIEFLPAEAGREGAGFTPRIEAGV 508 Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI--FSNGKKRVIQ 372 + + + + + A +A I + + + R ++ Sbjct: 509 YVKEEEKARAEGRDLVDAG---------TAEAWWVAGRIRRWVEEGELVVRDGEEVRPVR 559 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 DI VL+R + R + I L DL + + Sbjct: 560 YGDIAVLMRTGTNQLAFERAFRA----HGIPYTAAYSRNLFLEAPANDLFSWLFIAVYPH 615 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ--------RHETETVYEYIQKFANCGISKFQHV 484 D LS+ +L+ PL S+ DI ++ + R E E + ++ + +++ Sbjct: 616 DLLSYAAVLRGPLVGLSDRDILRLIEREEGCFSLSREEVEEMLGDEEELLRERVERYERG 675 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQNS 543 + L+ + R + R + + DE + F R E+ Sbjct: 676 KEIYDWLVSHRDRVPHERLLRYLWVDCGYRMVLLGREQLHPFLRFYDELVAFVRRWEERP 735 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + + E + + VRIMT+H AKGLE PVV L G++ Sbjct: 736 LARCLDEVKEELGRYGRVDVEEGRGEDAVRIMTIHAAKGLEFPVVVLASCGAESRREGEG 795 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 K + M G K N + + +KK EE RLLYVG+TRA L+ Sbjct: 796 KMPYFMVEGVPAFGFEGDEEGKK-ENPLYRRAAEEMKKKEAEEMLRLLYVGLTRAQSHLL 854 Query: 664 ICKHS---------NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 I + K ++ +++++ + V+ I EW E Sbjct: 855 ITGEWRGAVGKEEHGADDGSKKTVPSFMSLLFEAKIEEPEVRFKADQEGIAGVEWRDPER 914 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIK-NDINEPYILNPSTIDTKGKTNLESL 773 E ER + + ++ + + P +L+ S + + + Sbjct: 915 IPGITEEELRERVGSGSRGGRWEEAARWYEEVDEGVGGVRPGVLSVSVLAGEWEAER-GG 973 Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS---YCTKNAKLWPAKEY--KNLLLSI 828 + + G ++H+ + + L + R W + + + Sbjct: 974 EARGRGAVFGSLVHRGMVLWARLGDEGRVREALRGEALAWGGDGEWGEVDRVCEEAAALV 1033 Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 R E+ + + + EV + + ++ G +D + + + I+E+KT Sbjct: 1034 RRWAESEVGREVLGNGAGWEVECVAEW----EGRVLHGVMDAVWVGDGVVRIYEWKT--- 1086 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 E E + AQL +Y I +P + + C+L Sbjct: 1087 ---EEEPDVERYRAQLFLYGLIASRVWPGRRVECVL 1119 >gi|91788136|ref|YP_549088.1| UvrD/REP helicase [Polaromonas sp. JS666] gi|91697361|gb|ABE44190.1| UvrD/REP helicase [Polaromonas sp. JS666] Length = 1095 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 154/928 (16%), Positives = 310/928 (33%), Gaps = 109/928 (11%) Query: 21 WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80 W + + + PT K L+QA + FS L LT K +P Sbjct: 265 WLAHPARRQTLLEAAKALGRASAPTFSAKGVELEQALTAGDMSAVFSAL----LTDKGSP 320 Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 +K + ++++QD ++ ++ + L + L A + Sbjct: 321 RKFGEKIAG-------IDIVRQAQDLALRAVAACQQHEAWTHQQRMARLTRALIAQFTGL 373 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 K++ +D D+ +L +S W++ ++D I H++IDE QDT+ +QW+ + + Sbjct: 374 KRERGWVDMNDVERAALVMLGDPVLSGWVQERLDARIKHLMIDEFQDTNPLQWQSLYA-- 431 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + +G + S ++F VGD KQSIY F AEP+ + G ++ Sbjct: 432 --WLIGYSGAGSAPSVFLVGDPKQSIYRFRRAEPQVFRAAQA-----FVVEGLGGDLLSC 484 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 + R+ ++ V+ + A G T S RIG G + + ++ Sbjct: 485 DHTRRNAEAVIDTVNAAMATARAADGYEGFREHTTA--SGRIGAAGRLPPIPRQKDTDEA 542 Query: 321 QCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377 + W LP+E+ + A + A IS + + ++ DI+ Sbjct: 543 ALAGPESGWRDSLTTPRELPEETLRTREALQAAAWISGQLASG----------LKPSDIM 592 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 VL RKR + R L I ++ L D + D++AL ++S + DLS Sbjct: 593 VLSRKRAGLLPLQDELRAL----HIPAQVGEKTDLIDCCEVLDVVALLDALVSPQHDLSL 648 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497 L+SPLF ++ + ++ + E + + + + Q + Sbjct: 649 ARALRSPLFGVADAGLVQLALLQRELRMPWYQVLQKTELLAPELQGPGAVLTRWKGWLDQ 708 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISE 553 PHD I +F++ L L L + Y++ + Sbjct: 709 LPPHDALQSIYDDGDVLARFVAAAPAAQRGTVLANLRALLGVALDRDGGRYATPYAFVRA 768 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 L+ + +++ VR++T+H AKGLE+ V L+DT + + + + P Sbjct: 769 LKAGGTLA--PAAVSNDAVRLLTIHGAKGLEAEAVLLLDTDTLERNADSMGVLVDWPGEA 826 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 P +++ ++ + + E LYV +TRA L+I Sbjct: 827 VAPHKFVFLVSESRPPACAEKVLADELLARKREELNALYVALTRARHTLVISSIEPHRET 886 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 +S + Y +V P E+I Sbjct: 887 SESWWQRLYGLVG----------------------------------ELPAPVVESIGPA 912 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793 + + P + D+ G +H+LL+ Sbjct: 913 AASAAKSQIFYLPELPVLP--------DTAIHKVLPDTPEDEDSTVARVGKAMHRLLEWG 964 Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853 + + + R+L A + ++ + Sbjct: 965 GPFSAQQLAAVAREF------RLSPAQAARAGGLAERIL-TGEGAWAWNPNAVAWQGNEI 1017 Query: 854 KINCPKKDIIISGRIDQISI-----SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 + + + + D++ + + ++ +YK+ + + Q+ Y Sbjct: 1018 DLVYQGQPLRL----DRLVQRKDAGHEGHWWVLDYKSAGAPQSQPALLA-----QMQTYR 1068 Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFIIP 936 ++ YP ++ + V + Sbjct: 1069 AAVQQIYPAATVKAAFL-TGSGAVVELS 1095 >gi|299820618|ref|ZP_07052508.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601] gi|299818113|gb|EFI85347.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601] Length = 730 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 110/575 (19%), Positives = 198/575 (34%), Gaps = 118/575 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + YE+ K+N LDF+DLI+ T L ++ + ++ +I +DE QD Sbjct: 171 KMVGDVYEAYEKKLKRNQALDFDDLIMVTIQLFER---VPEVLEYYQRKFQYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L F + L VGD QSIY + GA+ +L ++ K Sbjct: 228 TNHAQYLLVKLLAARF----------KNLCVVGDSDQSIYGWRGADISNILSFEKDYPK- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++I L ++RST IL + V N + Sbjct: 277 -------AAVILLEENYRSTKRILEAANSVIENNSNRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW S ++ + + A + I + Sbjct: 311 --LW-------TSNSEGKKIFYHKALTEKEE-------AAYVVSKIQELKR--------- 345 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 DI +L R + ++ I+ D IKD++A R Sbjct: 346 ----PYSDIAILYRTNAQSRVLEEYF----MKSNIAYTMVGGTKFYDRKEIKDILAYLRL 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN-----CGISKF 481 + + +DD+S ++ P + K+ ++E + + + Sbjct: 398 VSNNDDDISLTRIVNVPKRGVGAGTLDKLNNVATSYDLPLFEVLNRIEMAGISAKVSKQL 457 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + +H + + S + IL R+ + E + +DEFL+ T Sbjct: 458 VEFYELVHGFTQMQDYLSVTELVEEILKKTGYREMLENERTIEAQTRLENIDEFLSVTQN 517 Query: 539 NE-QNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E ++ SL +++L + N+ V +MT+H+AKGLE PVVFLV Sbjct: 518 FEKESEDKSLLAFLTDLALVADVDRLEDETENNGSVTLMTLHSAKGLEFPVVFLVGMEEG 577 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H ++S EE RL YVG+T Sbjct: 578 IFPHS----------------------------------RAIYEESEMEEERRLAYVGIT 603 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 RA ++L I + + + + + + Sbjct: 604 RAEEELFITSAYSRMLYGRPSSNLESRFIGEIPAD 638 >gi|323341292|ref|ZP_08081537.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644] gi|323091286|gb|EFZ33913.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644] Length = 756 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 123/781 (15%), Positives = 236/781 (30%), Gaps = 144/781 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + V+ N + ++ L + Sbjct: 41 GAGSGKTRVLTHRVAYLIEHQNVNPWNILAITFTNKAAREMRERIDRLVEYGSEAVWVST 100 Query: 66 FSLLS--------------SFFLTQKFTPQKNII------TQEINKKSPDLKEKLKKSQD 105 F L F + QK ++ T ++ K D + L Sbjct: 101 FHALCVRILRRDAEKVGFSKAFTIGSPSEQKTLMKHIVADTLNLDTKQYDPRSFLASISS 160 Query: 106 EFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++ + + A Y++ KKN +DF+DLI+ T L + Sbjct: 161 WKNELIEPEEALLQANAEANPMEVAAARAYQIYQDELKKNQTMDFDDLIMKTIQLFESSP 220 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + ++ +I +DE QDT+ Q+ ++ L + F R L VGD Q Sbjct: 221 ET---LEFYQRKFRYIHVDEYQDTNEAQYRLVNMLAKGF----------RNLCVVGDADQ 267 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY + GA + +L ++ + ++I+L ++RST IL ++V N Sbjct: 268 SIYGWRGANMENILNFEKDY--------KDATVIKLEQNYRSTKTILQAANEVIEHNLNR 319 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW + + ++ ++ + Sbjct: 320 KDKT---------------------LW-------TENESGDKITYYRADNAADEGY---- 347 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 + I I D +L R + + I Sbjct: 348 ---FVIKNIQKEIREKHR---------SYNDFAILYRTNAQSRTLEETF----VKANIPY 391 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHET 463 D I D++A R + + +D +SF ++ P I K+ Sbjct: 392 KLVGAHRFYDRKEIMDILAYLRLVANPDDSMSFARVVNEPKRGIGATSITKLQNFADMHG 451 Query: 464 ETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++YE + K + + + + + IL ++ Sbjct: 452 ISLYEAGKSVDLTGIPVRTAKKITEFCDMLKLFHQVQKQATITEMTEQILSITGYQKALN 511 Query: 519 SRFGNEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANH 569 E + L+EFL+ T E + +++L N Sbjct: 512 DANTLEAKGRLENLEEFLSVTKEFDENWDPEDEESDPFTDFLADLALVSDQDGVD--QND 569 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629 + V +MT+H AKGLE PVVFL+ +F Sbjct: 570 DVVTLMTLHAAKGLEFPVVFLIGMEEGIFPLG---------------------------- 601 Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVY 686 + +S EE RL YVG+TRA ++L + + +++ + + Sbjct: 602 ------RAAMNESDLEEERRLAYVGITRAEEKLYLTNALSRMLYGRTQQNTASRFIGEIS 655 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 D+ + + A + +ER KI K+ Sbjct: 656 DALLESANETVRNSSYPFSSGPVAAKKVEKPRKRPGTIERPAQTGAENVGWKIGDKVEHK 715 Query: 747 I 747 Sbjct: 716 A 716 >gi|291483101|dbj|BAI84176.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto BEST195] Length = 739 Score = 313 bits (802), Expect = 9e-83, Method: Composition-based stats. Identities = 118/616 (19%), Positives = 208/616 (33%), Gaps = 124/616 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y++ KN LDF+DLI+ T L + + ++ +I +DE QD Sbjct: 171 QVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDR---VPEVLEFYQRKFQYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L E F + L VGD QSIY + GA+ +L ++ Sbjct: 228 TNRAQYMLVKQLAERF----------QNLCVVGDSDQSIYRWRGADITNILSFEKDYPN- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 S+I L ++RST IL ++V N + + Sbjct: 277 -------ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKN------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S+ + + + +A I + + Sbjct: 311 --LW-------TENDEGIKISYYRGDNEFGEG-------QFVAGKIHQLHSSGKR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + DI +L R + +I ++ D IKD++A R Sbjct: 350 ----KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481 + + +DD+SF ++ P + KI + ++ IQ+ + Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDFIGVSAKAANAL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + I L ++ + S + IL + R+ + E + +DEFL+ T Sbjct: 462 DSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKN 521 Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDT 593 EQ + +L +++L + + + +MT+H AKGLE PVVFL+ Sbjct: 522 FEQKSEDKTLVAFLTDLALIADIDQLDQQEEESGGKDAITLMTLHAAKGLEFPVVFLMGL 581 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF H RL YV Sbjct: 582 EEGVFPHSRSLMEEAEMEEE----------------------------------RRLAYV 607 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 G+TRA +L + + ++N + + L N K E A Sbjct: 608 GITRAEQELYLTNAKMRTLFGRTNMNPESRFIA-------EIPDDLLENLNEKKETRATS 660 Query: 714 WSTHHPENTPLEREET 729 P P+ R + Sbjct: 661 ARKMQPRRGPVSRPVS 676 >gi|239625785|ref|ZP_04668816.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520015|gb|EEQ59881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 854 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 116/730 (15%), Positives = 237/730 (32%), Gaps = 145/730 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 27 GAGSGKTRVLTHRVAYLIDEKDVNPWNILAITFTNKAAGEMRERVDQLVGFGAESIWVST 86 Query: 66 FSL--------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEK-----LKKS 103 F ++ F QK ++ + ++ + KE+ + + Sbjct: 87 FHSTCVRILRRHIECLGYTTSFSIYDSDDQKTLMKQVFKSLDVDTKQFKERSVLGVISSA 146 Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 +D+ I + + Y++ KKN LDF+DLI+ T +L + Sbjct: 147 KDKLIMPEEFLLNAGQDFRQKK----VGEIYREYQKQLKKNNALDFDDLIVKTVELFQNN 202 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 A + + +I++DE QDT+ Q++++ L + + R L VGD+ Sbjct: 203 ---AEVLNYYQERFKYIMVDEYQDTNQAQFKLVNLLADKY----------RNLCVVGDDD 249 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY F GA+ + +L + +I+L ++RST +IL + V Sbjct: 250 QSIYRFRGADIENILSFESAFP--------GAKVIKLEENYRSTQNILNAANGVIRHNRG 301 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + + LW + + + + + Sbjct: 302 RKDKT---------------------LW-------TANGEGNLIRFKQFDMARDE----- 328 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 A +A I + +D VL R + LI Y + Sbjct: 329 --ADYVARQIRD-------------SEFAYQDQAVLYRTNAQSRLIEER----CIFYNVP 369 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 IKD++A + I + DDL+ + ++ P + K+ Sbjct: 370 YRLVGGVNFYQRREIKDILAYLKTIANGVDDLAVLRIINVPKRGIGATTMGKVTAFASEH 429 Query: 463 TETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQ 515 ++Y +++ K + + A+ S D I+ +Q Sbjct: 430 GMSLYGALKEARQVPGLGKAAEKILKFVGQMESFRARAESEDFSIRDLIEGIMDETGYQQ 489 Query: 516 QFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E + ++E +N + E+ + + +L E + ++ + + Sbjct: 490 ELEAEGEIEAQTRLENIEELVNKAVSYEEDSEHPTLDEFLEQVALVADIDSMD--ESEDR 547 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H+AKGLE P V+LV +F Sbjct: 548 VTLMTLHSAKGLEFPKVYLVGMEDGLFPSMMS---------------------------- 579 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 I ++ EE RL YVG+TRA +L++ ++ + + Sbjct: 580 ----INSDDRTDLEEERRLCYVGITRAKKELVLTSARQRMVNGETRYCKPSRFLEEVPAE 635 Query: 692 DERVKKIKLT 701 ++++ Sbjct: 636 LLDEERLEPV 645 >gi|296330119|ref|ZP_06872601.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673364|ref|YP_003865036.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152708|gb|EFG93575.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411608|gb|ADM36727.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 739 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 118/616 (19%), Positives = 208/616 (33%), Gaps = 124/616 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y++ KN LDF+DLI+ T L + + ++ +I +DE QD Sbjct: 171 QVVSDVYTDYQKKLLKNQSLDFDDLIMTTIKLFDR---VPEVLEFYQRKFQYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L E F + L VGD QSIY + GA+ +L ++ Sbjct: 228 TNRAQYMLVKQLAERF----------QNLCVVGDSDQSIYRWRGADITNILSFEKDYPN- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 S+I L ++RST IL ++V N + + Sbjct: 277 -------ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKN------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S+ + + + +A I + + T Sbjct: 311 --LW-------TENDEGIKISYYRGDNEFGEG-------QFVAGKIHQLHSSGTR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + DI +L R + +I ++ D IKD++A R Sbjct: 350 ----KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481 + + +DD+SF ++ P + KI + ++ IQ+ + Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGLSFFQAIQQVDFIGVSAKAANAL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + I L ++ + S + IL + R+ + E + +DEFL+ T Sbjct: 462 DSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKN 521 Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDT 593 EQ + +L +++L + + + +MT+H AKGLE PVVFL+ Sbjct: 522 FEQKSEDKTLVAFLTDLALIADIDQLDQQEEESGGKDAITLMTLHAAKGLEFPVVFLMGL 581 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF H RL YV Sbjct: 582 EEGVFPHSRSLMEEAEMEEE----------------------------------RRLAYV 607 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 G+TRA +L + + ++N + + L N K E A Sbjct: 608 GITRAEQELYLTNAKMRTLFGRTNMNPESRFIA-------EIPDDLLENLNEKKETRAPS 660 Query: 714 WSTHHPENTPLEREET 729 P P+ R + Sbjct: 661 ARKMQPRRGPVSRPVS 676 >gi|314936814|ref|ZP_07844161.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp. hominis C80] gi|313655433|gb|EFS19178.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp. hominis C80] Length = 1224 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 141/928 (15%), Positives = 294/928 (31%), Gaps = 131/928 (14%) Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 +++D + + K + + + K+ VLDF D +L Sbjct: 324 LMRSVDELKDDMKQL--APRIKYLVQIIKDIINDFAKKKRSRNVLDFADYEHFALQILTD 381 Query: 163 -RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + I + + ILIDE QDT+ +Q +I ++ LF VGD Sbjct: 382 ENGTPSTIAKEYRHQFEEILIDEYQDTNQVQEAIISTIKR-------GDELDGNLFMVGD 434 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI- 280 KQSIY F A+P + + K G I+L +FRS ++L+ + +F Sbjct: 435 VKQSIYKFRQADPTLFMSKYHRFTKEGQQTGL---RIDLSNNFRSRKEVLSTTNYLFDHM 491 Query: 281 -PENAQGLSEDSTTTIRHRSSR-IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 E ++ D+ + + + ++L + S+++ Sbjct: 492 MDEAVGEINYDADARLYFGAHYYPEKAMPLELHALIKSENED----------------ID 535 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFL 396 A + + +++ ++ R KDI++L R + + + Sbjct: 536 LDRQEQEAYYVVEQVKHILDNKLVYDAKNNAYRKATYKDIVILERGMSNARR----LQKV 591 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 D I N + + ++ +++ R I + D+ V +++S ++ F+ED++ +I Sbjct: 592 FKDNNIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEDELAEI 651 Query: 457 CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + Y+ I + +K + I+ IH Q + Sbjct: 652 RVVSSNDDYFYQSILHYIKYDQANAQLVNKLRRFIEDIHLYQDYGQTHPVYQLIDKFYND 711 Query: 511 KKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN- 568 Q F G + L N + E +++ L + I +++ K N Sbjct: 712 HYVIQYFSGLIGGKGRRANLFGLFNKAIEFENSTFRGLYQFIRFIDELIERKKDFGEENV 771 Query: 569 ----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI---- 620 N VR+MT+H++KGLE P V K + + Sbjct: 772 IGPNDNVVRMMTIHSSKGLEFPYVIYSGLSKNFNKEDIRKPLVLNQKYGLGMEYYDLTNN 831 Query: 621 -----------------------------------------------WIPQSKSRNNIVS 633 + R I + Sbjct: 832 ISYPSLSSVVVKSLTEKELISEEMRLMYVALTRAKEQLILIGTVDKEEKLRKYERLPISN 891 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 LI K+ + E L+Y + + Q I + ++ + + + H DE Sbjct: 892 QLIALHKRLSVERPFNLVYSILAKHLSQSITSDYQFETSINQLDDSLKPYVDLKIIHFDE 951 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENT-----------PLEREETIKQLMDEQKIPKK 742 ++++ E + ++ E+ P + ++ ++ Sbjct: 952 LSLIGDSNETLHRTINDIEEEAPNNKESEQQMIHQLTFKYPFIKNTQKPSKQSVSELKRQ 1011 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 L + + T + + G ++H ++Q + + + Sbjct: 1012 LETKEDGTSYDRVRQYRIGAYTYERPKFLRQERKRKANEIGTLMHTVMQHLPFREQRLTE 1071 Query: 803 NFITSYCT--KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSG----- 853 + Y + + K++ I + + + D Y E+ Sbjct: 1072 TELDDYIHMLIDQHIIEEDAKKDIQFERIMEFIRSDLYMKIAQADEVYRELPFVVNQARV 1131 Query: 854 -KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE---HIPYTHIAQL 904 +I +D+ II G ID I I + +YKT + E + + Q+ Sbjct: 1132 DEIPDLDEDVSIIQGMIDLIFIKDNQYYFVDYKTDAFNRRRGMTDQEIGIQLRDKYKIQM 1191 Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKV 932 Y+ L+ NK + L + ++ Sbjct: 1192 KYYKNTLETIL-NKRVHGYLYFFQFGEM 1218 >gi|297528689|ref|YP_003669964.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3] gi|297251941|gb|ADI25387.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3] Length = 724 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 124/692 (17%), Positives = 230/692 (33%), Gaps = 137/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ Q L + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEDVWIST 91 Query: 66 FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + + + + I+ K +L+ L Sbjct: 92 FHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKDKNIDPKKFELRTILATISGA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + K +++ + + Y++ +N LDF+DLI+ T L + Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFDR---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I IDE QDT+ Q+ +++ L E F + + AVGD QSI Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL ++V + N + Sbjct: 257 YRWRGADIRNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIAHNVNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + + + + + A Sbjct: 309 KR---------------------LW-------TENPEGKPIVYYEAMNEVDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I + + + +D VL R + +I + I Sbjct: 334 QFVARRIQEAVESGER---------RYRDFAVLYRTNAQSRVIEEMF----LKANIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DDLS + ++ P I K+ + Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E + + + + + ++ + +L R+ + Sbjct: 441 LFEALGELEMIGFSTKTAGALAAFRGQLEQWTQLQEYVPVTELVEEVLDQSGYREMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573 E + LDEFL+ T E + SL +++L +A + V Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDLALISDLDELNGTDQAAEGDAVV 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 MT+H AKGLE PVVFL+ +F H Sbjct: 561 FMTLHAAKGLEFPVVFLIGMEEGIFPH--------------------------------- 587 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 L + EE RL YVG+TRA ++L++ Sbjct: 588 -LRSLENEDEMEEERRLAYVGITRAEEELVLT 618 >gi|325662111|ref|ZP_08150729.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 4_1_37FAA] gi|325471560|gb|EGC74780.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 4_1_37FAA] Length = 741 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 115/604 (19%), Positives = 193/604 (31%), Gaps = 111/604 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 YE K N LDF+DL++ T L + + I + +I++DE QDT+ Sbjct: 170 AEAYKEYERQLKANNALDFDDLLVKTVQLFQTQPE---ILEYYQERFRYIMVDEYQDTNT 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+++I L + + L VGD+ QSIY F GA + +L ++ + Sbjct: 227 VQFKLISLLAAKY----------KNLCVVGDDDQSIYKFRGANIQNILSFEKEFEH---- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST+ IL + V + S L Sbjct: 273 ----TKVIKLEQNYRSTSTILDAANAVIKNNVGRKAKS---------------------L 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W ++ + + + + A I I + Sbjct: 308 W-------TENGEGEKIQFRQFDTAYDE-------AEYIVGDIRERVDNG---------K 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + L I IKDL+A + I + Sbjct: 345 AAYCDHAVLYRTNAQSRLFEEKM----ITANIPYKIVGGVNFYARKEIKDLLAYLKTIDN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFA-----NCGISKFQHV 484 +DDL+ ++ P + +I + + YE + ISK + Sbjct: 401 GKDDLAVRRIINVPKRGIGLTTVNRITEAAQQRGISFYEALCSADLVPGLGRSISKLESF 460 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I A+ S + IL ++ + E + +DEFLN E+ Sbjct: 461 AAMIEYFRKEAEHLSITELMKEILTETGYVEELKAEGEEEAEVRLQNIDEFLNKIAAYEE 520 Query: 542 NSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L L LE+ + V +MT+H+AKGLE P V+L +F Sbjct: 521 SCEEELPTLSGFLEEVALVADIDSLDEESDYVVLMTLHSAKGLEFPYVYLAGMEDGIFPS 580 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 I + EE RL YVG+TRA Sbjct: 581 YMT--------------------------------ITADDPTELEEERRLCYVGITRAKK 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +L + ++ + + KI + + AY + + Sbjct: 609 ELAMTCARRRMIRGETQYNKMSRFLKEVPPQLLSTGKIVEKEELELPKQNAYVQAKQSFQ 668 Query: 721 NTPL 724 P Sbjct: 669 AKPF 672 >gi|228474316|ref|ZP_04059051.1| recombination helicase AddA [Staphylococcus hominis SK119] gi|228271675|gb|EEK13022.1| recombination helicase AddA [Staphylococcus hominis SK119] Length = 1221 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 142/928 (15%), Positives = 294/928 (31%), Gaps = 131/928 (14%) Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 +++D + + K + + + K+ VLDF D +L Sbjct: 321 LMRSVDELKDDMKQL--APRIKYLVQIIKDIINDFAKKKRSRNVLDFADYEHFALQILTD 378 Query: 163 -RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + I + + ILIDE QDT+ +Q +I ++ LF VGD Sbjct: 379 ENGTPSTIAKEYRHQFEEILIDEYQDTNQVQEAIISTIKR-------GDELDGNLFMVGD 431 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI- 280 KQSIY F A+P + + K G I+L +FRS ++L+ + +F Sbjct: 432 VKQSIYKFRQADPTLFMSKYHRFTKEGQQTGL---RIDLSNNFRSRKEVLSTTNYLFDHM 488 Query: 281 -PENAQGLSEDSTTTIRHRSSR-IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 E ++ D+ + + + ++L + S+++ Sbjct: 489 MDEAVGEINYDADARLYFGAHYYPEKAMPLELHALIKSENEDTDL--------------- 533 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFL 396 A + + +++ ++ R KDI++L R + + + Sbjct: 534 -DRQEQEAYYVVEQVKHILDNKLVYDAKNNAYRKATYKDIVILERGMSNARR----LQKV 588 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 D I N + + ++ +++ R I + D+ V +++S ++ F+ED++ +I Sbjct: 589 FKDNNIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEDELAEI 648 Query: 457 CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + Y+ I + +K + I+ IH Q + Sbjct: 649 RVVSSNDDYFYQSILHYIKYDQANAQLVNKLRRFIEDIHLYQDYGQTHPVYQLIDKFYND 708 Query: 511 KKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN- 568 Q F G + L N + E +++ L + I +++ K N Sbjct: 709 HYVIQYFSGLIGGKGRRANLFGLFNKAIEFENSTFRGLYQFIRFIDELIERKKDFGEENV 768 Query: 569 ----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI---- 620 N VR+MT+H++KGLE P V K + + Sbjct: 769 IGPNDNVVRMMTIHSSKGLEFPYVIYSGLSKNFNKEDIRKPLVLNQKYGLGMEYYDLTDN 828 Query: 621 -----------------------------------------------WIPQSKSRNNIVS 633 + R I + Sbjct: 829 ISYPSLSSVVVKSLTEKELISEEMRLMYVALTRAKEQLILIGTVDKEEKLRKYERLPISN 888 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 LI K+ + E L+Y + + Q I + ++ + + + H DE Sbjct: 889 QLIALHKRLSVERPFNLVYSILAKHLSQSITSDYQFETSINQLDDSLKPYVDLKIIHFDE 948 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENT-----------PLEREETIKQLMDEQKIPKK 742 ++++ E + ++ EN P + ++ ++ Sbjct: 949 LSLISDSNETLHRTINDIEEEAPNNKENEQQMIHQLTFKYPFIKNTQKPSKQSVSELKRQ 1008 Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 L + + T + + G ++H ++Q + + + Sbjct: 1009 LETKEDGTSYDRVRQYRIGAYTYERPKFLRQERKRKANEIGTLMHTVMQHLPFREQRLTE 1068 Query: 803 NFITSYCT--KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSG----- 853 + Y + + K++ I + + + D Y E+ Sbjct: 1069 TELDDYIHMLIDQHIIEEDAKKDIQFERIMEFIRSDLYMKIAQADEVYRELPFVVNQARV 1128 Query: 854 -KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE---HIPYTHIAQL 904 +I +D+ II G ID I I + +YKT + E + + Q+ Sbjct: 1129 DEIPDLDEDVSIIQGMIDLIFIKDNQYYFVDYKTDAFNRRRGMTDQEIGIQLRDKYKIQM 1188 Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKV 932 Y+ L+ NK + L + ++ Sbjct: 1189 KYYKNTLETIL-NKRVNGYLYFFQFGEM 1215 >gi|258512041|ref|YP_003185475.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478767|gb|ACV59086.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1240 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 149/1014 (14%), Positives = 326/1014 (32%), Gaps = 133/1014 (13%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 GL+ E K + +S++ + ++L G P + L Sbjct: 237 GLAELERMRAPEK-VVAGALSILSNLKEALALLSTPGAPLDPDRLAPLV----------- 284 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 S L++++ P K + N+ L++ L++ + + M Sbjct: 285 --HWESARLSKEYEPFKKWRGKA-NEAMKLLRKVLRRGRAALEA-----DVRAMRPHIEV 336 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 +A+ A + + + L F DL ++LL K + +R + ++ +DE Sbjct: 337 LTGVARDTLARAQSRRLEENRLSFSDLEHLAHELLAKDEG---VRAALHARYRYVFVDEY 393 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDTS IQ ++ ++ P LF VGD KQSIY F AEP L R Sbjct: 394 QDTSPIQDAIVDAVA-----------PPGGLFLVGDVKQSIYGFRMAEPGLFLARYRRYA 442 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIG 303 ++ I+L ++RS + I+ V+ +F +A G ++ ++ Sbjct: 443 EK-----DGGEAIDLSANYRSRSGIVRFVNYLFGQLFHADVAGFDYADGHEMKPEAAYPD 497 Query: 304 QVGTVQLWEQ---------VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 G + +++ + ++ D I A +A I+ Sbjct: 498 DDGGPCPVKIKLFFSGDAGNDRVEETEEPERADAKGEDEDEQVAREKLEIEAMWVADQIA 557 Query: 355 NMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 + + R ++ +D+ +L+R + + I V Sbjct: 558 RALERQERVYDRAAKAYRPLRYQDVAILLRAGGENLN---TVVQVLASRGIPAVARSSSG 614 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 + I+ ++L + + D L+ LKSP S+DD+ + + Sbjct: 615 FFRAMEIRWAVSLLTALDNPLDSLALAAALKSPFVGLSDDDLAAARIACPRGPLWHAVRE 674 Query: 472 KFANCG--ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDV 528 + + ++ + +A +P D I + G Sbjct: 675 AARDTEGARDALRLAVERLERWRGLAHTLAPGDLLREIAREVEIDLYLRAMPRGLARAAN 734 Query: 529 LDEFLNFTLRNE--QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 L++ + + ++ LE+ + AH A+ + V +MT+H +KGLE P Sbjct: 735 LEQLIRLAQSHAPHAGDLYRFLAMVRGLEEADVDLGHAHGASADSVAVMTIHGSKGLEFP 794 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 V+++ G + F H + + + L + R + + ++++ E Sbjct: 795 HVYVLCLG-RQFPHN-KRTLALHRRLGIGATMCDVQTGVHWRTVPSIAVDQANLEASRAE 852 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVY 686 R+LYV +TRA ++L++ H+ + K ++ +W Sbjct: 853 EARVLYVALTRAKERLVLVGHAGKVAKLADAAEGHDDEGRLTPEAFLKGNSYASWILPAL 912 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN-----------------TPLEREET 729 + ++K + + + PL E Sbjct: 913 MRHPDGAWLRKEAGDARAALLDAPGVRFELEVEVDGRPQGQESGEPRSSLFKAPLPPAEE 972 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPS------------------------TIDTK 765 +++ + +E S + Sbjct: 973 VERELRRLWQGPAWRYRAVRVASEQRGSRVSLPSKLTATDIRRLFAERELRARGRHAGSV 1032 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + S RG+ H +Q P + + + + + L Sbjct: 1033 LEDPAFVRQSGASPRERGVAFHAFMQRAPMQPYANPDDVRRAAQALLEQGLLDERMASAL 1092 Query: 826 --LSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKD----IIISGRIDQISISQQNI 878 + +P+ ++ Y E +++ D +++ G ID + + Sbjct: 1093 DPDDVLAFFASPLGRRVLAAGEVYREQPFFYRLDVRAGDAQAPVVVQGVIDCLIRDARGY 1152 Query: 879 FIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + +YKT +++ + + Q++ Y ++++ + L +V + Sbjct: 1153 AVIDYKTDQVRDASDLDRLVRAYEPQVATYAAAVREAVGTEP-EVYLYFVHARE 1205 >gi|154483242|ref|ZP_02025690.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC 27560] gi|149736050|gb|EDM51936.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC 27560] Length = 780 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 111/574 (19%), Positives = 196/574 (34%), Gaps = 82/574 (14%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 QK + I ++ K L K D K+ +M +S L L + Sbjct: 120 QKKLLKDVIKNLNLDPKMYKENAVLGKISDFKNKLVTTGEVAQMAQSDFKLLNL-SKIYN 178 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 +Y+EA KKN LDF+DLI+ T L +K + + + +I++DE QDT+ Q+ Sbjct: 179 NYQEALKKNNALDFDDLIMKTVHLFRK---CPEVLESYQERLKYIMVDEYQDTNGAQFAF 235 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 I+ L + + L VGD+ QSIY F GA+ +L+ ++ Sbjct: 236 IKLLASKY----------QNLCVVGDDDQSIYKFRGADISNILQFEKNFNN--------A 277 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 +++L ++RST IL ++V + + + LW Sbjct: 278 RVVKLEQNYRSTKTILDAANEVIHNNKGRKDKT---------------------LW---- 312 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 ++ D+ + A +A TI + D Sbjct: 313 ---SDNEQGEKIDLYQAEDAYAE-------ADMVASTIKENVDFGR---------ADYSD 353 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 +L R + + I IKD++A R I + DD+ Sbjct: 354 YAILYRTNAQSRALEEKL----LLRNIPYKIIGGQNFYQRKEIKDVLAYLRIICNATDDI 409 Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQHVIKYIH 489 + ++ P + K R +YE + + N +K + I Sbjct: 410 AVERIINVPKRGIGATTVTKAKDFARAYGFNLYESLLEVENIPGLERAATKVRKFTDLIE 469 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYS 545 Q S + +L + + +E + +DE + E+N Sbjct: 470 NFKDQQQSMSLKELVNEVLNETGYVAELAAENTDEANGRIENIDELITKVTEYEENTDNP 529 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 SL E + E+ + + V +MTVH+AKGLE P VFL +F Sbjct: 530 SLAEFLEEVALVSEIDN--LDEDSSYVVLMTVHSAKGLEFPNVFLCGMEDGLFPGYMSIM 587 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 L ++ + ++ +S + + Sbjct: 588 SDDPEELEEERRLCYVAITRAMKHLTISYAKRRM 621 >gi|240139167|ref|YP_002963642.1| UvrD/REP helicase [Methylobacterium extorquens AM1] gi|240009139|gb|ACS40365.1| UvrD/REP helicase [Methylobacterium extorquens AM1] Length = 1124 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 161/976 (16%), Positives = 317/976 (32%), Gaps = 98/976 (10%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L FG + +++ + +++ + +++ A A T Sbjct: 211 LVRAFG-ASVQAFADFQRSCGVSEGETAANVRAFQAMAARL---PDTGVADADLVAILTA 266 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF----IKIRDRFNT 116 E F + K ++ ++L+ S + + R Sbjct: 267 AAEASLCKADGDFAKYRGGKGKWAGAAKLVGLPKTEADRLQASAERLHVACCEAWRRLKA 326 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + + + Y+ K+ +LDF+DLI LL+ + +R + + Sbjct: 327 NAASELLARLVGTVRTVLDRYQARKRDGALLDFDDLIAAAATLLRAHET---VRQALGRR 383 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----TLFAVGDEKQSIYSFHG 231 H+L+DE QDT IQ E++ L + G + R LF VGD KQ+IY F G Sbjct: 384 YRHVLVDEFQDTDPIQTEILWRLCGELPDGAADAWTERVLRPGALFLVGDPKQAIYRFRG 443 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ +R + R+ + ++ + +FRS IL VD+ F N G + Sbjct: 444 ADVSTYVRARDRILARSPDD-----VLAISTNFRSCRSILAYVDERFGDILNGVGQPGFA 498 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 H L + + A +A Sbjct: 499 ALDAFH-PDHDRGPCIAALDVPAGADGAKRTAEALRD---------------AEAEAVAD 542 Query: 352 TISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 + +IG + R ++A DI +L D I V Sbjct: 543 LCARLIGHQLVTCKRAGTRTLRAGDIALLAPSGSDLWRYEEALEA----RGIPVSTQAGK 598 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI------CTQRHETE 464 + DL+AL R + D L+ +L+ P +++++ + +R E+ Sbjct: 599 GFFRRQEVHDLIALTRVLADPRDTLALGALLRGPAVGLTDEELLDLVDGLPRDPERPESV 658 Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 A + V++ + L A +PHD + + A R R Sbjct: 659 PRLRLHVDVAQVNHPVARPVLERLQALAKRALGTTPHDILSQAVDALMLRPVVQQRHDGH 718 Query: 525 VID---VLDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 +D FL + + + + E T++ A V ++T+H + Sbjct: 719 AERALANIDLFLEMSRPFAVRGLRAFAGAMRAAWEGRTRTVEGRPDAQEAAVSLLTMHAS 778 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE PVV ++T ++ + + +L D ++ P R + ++ K Sbjct: 779 KGLEWPVVIPINTTTRTKA--------VSGALVDRASNCLYCPVFGVRPAGYDEALEAEK 830 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 + E RL YV TRA + L++ + + + + L Sbjct: 831 REVGNERVRLWYVAATRARETLVLTRFAEPGASTS-------------WSAVVDLGLADL 877 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NP 759 + + + N + ++ + P + D P P Sbjct: 878 PSIDVERLPVGTPAVAPEFANGQTREIFAAEAAAVARQRRLRWIVPSRGDAAGPETSGAP 937 Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS--YCTKNAKLWP 817 ++ + RG++IHKLL+ I T + + + L Sbjct: 938 GLVEGGTDGGRGPGGRPTGSRERGILIHKLLEEILTGEASEGDDLGRRAGLLARQLGLGT 997 Query: 818 ------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871 + + S+TR L P + +E+ V G + +D +G +D I Sbjct: 998 GDAAGAEVDLAEVAASVTRALGLPEIAGI-RERLQAELPVFGFESLADEDQATAGVVDAI 1056 Query: 872 SIS----QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 + + ++K+ E + + Q++ Y L+++V Sbjct: 1057 ACDAVGKPD--IVVDWKSDVDP---AEAVLADYRRQVARYLLTTGARL------GLIVFV 1105 Query: 928 SEPKVFIIPQNKLNKA 943 + +V + + + Sbjct: 1106 TSGRVVPVTRAAMADV 1121 >gi|319647077|ref|ZP_08001303.1| PcrA protein [Bacillus sp. BT1B_CT2] gi|317390901|gb|EFV71702.1| PcrA protein [Bacillus sp. BT1B_CT2] Length = 725 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 119/720 (16%), Positives = 233/720 (32%), Gaps = 134/720 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ +++ Sbjct: 18 GAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVESILGPGADDIWIST 77 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110 F + L + I S L ++ Sbjct: 78 FHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKERNIDPKKFDPRSILGSISSA 137 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + ++ T + + Y++ +KN LDF+DLI+ T L + Sbjct: 138 KNELIAPEEYEKTAGGFFEQVVSDVYKDYQKKLRKNQSLDFDDLIMTTIVLFDR---VPE 194 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ +++ + + F + + VGD QSIY Sbjct: 195 VLEYYQRKFQYIHVDEYQDTNRAQYLLVKKMAQRF----------QNICVVGDSDQSIYR 244 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ S+I L ++RST IL ++V N + + Sbjct: 245 WRGADIANILSFEKDYPN--------ASVILLEQNYRSTKRILNAANEVIQNNSNRKPKN 296 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + S+ + + + Sbjct: 297 ---------------------LW-------TENDEGAKISYFRGDNEFGEG-------QF 321 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I ++G+ DI +L R + +I I+ Sbjct: 322 VAGKIRELVGSGKR---------SFSDIAILYRTNAQSRVIEETL----MKANINYNIVG 368 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKD++A R + + +DD+SF ++ P + KI +++ Sbjct: 369 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGVGATSVDKIAAYADMNGMSLF 428 Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + + + I L ++ ++ S + IL + R+ + Sbjct: 429 EALGQVDFIGLSARAANALDEFRQTIENLTNMQEYLSVTELTEEILEKTEYREMLKAEKS 488 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANH----NEVRI 574 E + +DEFL+ T E Q+ SL +++L + + V + Sbjct: 489 LEAQSRLENIDEFLSVTKNFEQQSEDKSLVAFLTDLALIADIDQLDQKEEETGNQDAVIL 548 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE PVVFL+ VF H Sbjct: 549 MTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEE--------------------- 587 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 RL YVG+TRA ++L + + ++N + + Sbjct: 588 -------------RRLAYVGITRAEEELYLTNARMRTLFGRTNMNPESRFIAEIPEELLD 634 >gi|284928732|ref|YP_003421254.1| Rep family ATP-dependent DNA helicase [cyanobacterium UCYN-A] gi|284809191|gb|ADB94896.1| ATP-dependent DNA helicase, Rep family [cyanobacterium UCYN-A] Length = 772 Score = 313 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 112/556 (20%), Positives = 191/556 (34%), Gaps = 99/556 (17%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ +N LDF+DLI+ L + + + HIL+DE QD Sbjct: 206 RVIAEIYDEYQTQLAENNALDFDDLILIPVCLFQDN---KSVLGYWHSQFKHILVDEYQD 262 Query: 188 TSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ IQ+ +I+ LT + + + R++F VGD QSIYSF A+ +L + Sbjct: 263 TNRIQYTLIQLLTTNGKINKNSWNWKNRSIFVVGDADQSIYSFRMADFTILLNFQAEFGD 322 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + K ++I+L ++RST +IL + + + +T Sbjct: 323 GLPDDDTK-TMIKLENNYRSTENILVAANNLIYKNSQRIDKTLKATR------------- 368 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 ++ D + A + I +I Sbjct: 369 ---------------GKGEKIYCYKADDEHIE-------AEFVISKIQELIS-------- 398 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + KDI L R + + I F D IKD +A R Sbjct: 399 INSELSWKDIAFLYRVNSQSRPFEDIL----VRKSIPYTIVGGFKFYDRQEIKDSVAYLR 454 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGIS 479 I++ D +S + ++ SP + I + E +++E ++ Sbjct: 455 LIVNPYDTVSLLRVINSPRRGIGKTTIDLLLKASQELKTSLWEILIDETSVKTLTGKSSK 514 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + I +L + D F ++ + E ++ L E N Sbjct: 515 AVLNFVHMIKKLQEKSTELVSTDIFNQVMQKSGYIDDLKRKETEESDNRLENLQELYNAM 574 Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + E+N+ SLQ ++ +N+V +MT+H+AKGLE PVVFLV Sbjct: 575 NQYREENNDPSLQGYLTNASLASDLDN--LENENNKVSLMTLHSAKGLEFPVVFLVGLEQ 632 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 H + + EE RL YVG+ Sbjct: 633 GTLPHIRSLNNPL----------------------------------SLEEERRLCYVGI 658 Query: 656 TRASDQLIICKHSNTS 671 TRA ++L I S Sbjct: 659 TRAQEKLFITYARERS 674 >gi|260590017|ref|ZP_05855930.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583] gi|331084334|ref|ZP_08333438.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 6_1_63FAA] gi|260539529|gb|EEX20098.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583] gi|330401598|gb|EGG81179.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 6_1_63FAA] Length = 736 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 110/670 (16%), Positives = 220/670 (32%), Gaps = 119/670 (17%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 + + L + + NI T+ + + + ++DE I Sbjct: 96 RRFIDRLGYDTNFTIYDADDQKTLMKDICKRLNIDTKVYKE--KAILAAISSAKDELIS- 152 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 + + M + + LA Y++ KKN LDF+DLI+ T +L + + Sbjct: 153 PEEYELQNMADFSKKKVILA---YKEYQKELKKNNALDFDDLIVKTVELFQS---CPDVL 206 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + +I++DE QDT+ Q++ + L + + L VGD+ QSIY F Sbjct: 207 EYFQERFRYIMVDEYQDTNTAQFKFVSLLASKY----------QNLCVVGDDDQSIYKFR 256 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA +L +++ +I L ++RST +IL ++V + + Sbjct: 257 GANIGNILGFEKVFSN--------AKVIRLEQNYRSTQNILNAANQVIQNNMERKRKT-- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 LW ++ + + ++ + A + Sbjct: 307 -------------------LW-------TENEEGEKLHFRQFMNAYEE-------AEYVV 333 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 IS + + +D VL R + L I Sbjct: 334 GEISKKVREGDG---------EYRDFAVLYRTNAQSRLFEEKL----LMANIPYKLVGGV 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469 IKDL+A + + + +DDL+ ++ P + ++ Y+ Sbjct: 381 NFYARKEIKDLLAYLKTVDNAKDDLAVRRIINVPKRGIGATTLSRVQDYASERGIGFYDA 440 Query: 470 IQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 +++ K + + +I L +F SP + I+ + ++ + +E Sbjct: 441 LREAEQIPSIGRAAVKVEPFVTFIQTLRSKQEFLSPSELLKDIIESTGYVEELRNEGTDE 500 Query: 525 VI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 + +DE + + E+ + +L + E+ + N+V +MT+H+A Sbjct: 501 AEARIENIDELITKVVSYEEENEAPTLSGFLEEVALVADIDSVD--GDDNQVLLMTLHSA 558 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P V+L +F I Sbjct: 559 KGLEFPYVYLAGMEDGIFPSYMT--------------------------------ITADD 586 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 + EE RL YVG+TRA +L + ++ + + + + Sbjct: 587 PTEIEEERRLCYVGITRAMKELTLSCAQQRMIRGETQYNKVSRFIKEIPRELVELGREFP 646 Query: 701 TNSINKDEWI 710 + + Sbjct: 647 EKKLKEIPMP 656 >gi|261418602|ref|YP_003252284.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61] gi|261375059|gb|ACX77802.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61] Length = 725 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 123/692 (17%), Positives = 229/692 (33%), Gaps = 137/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ Q L + Sbjct: 33 GAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEDVWIST 92 Query: 66 FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + + + + I+ K + + L Sbjct: 93 FHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKDKNIDPKKFEPRTILATISGA 152 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + K +++ + + Y++ +N LDF+DLI+ T L + Sbjct: 153 KNDLLTPEQFAK--RASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFDR---V 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I IDE QDT+ Q+ +++ L E F + + AVGD QSI Sbjct: 208 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 257 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL ++V + N + Sbjct: 258 YRWRGADIRNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIAHNVNRKP 309 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + + + + + A Sbjct: 310 KR---------------------LW-------TENPEGKPIVYYEAMNEVDE-------A 334 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I + + + +D VL R + +I + I Sbjct: 335 QFVARRIQEAVESGER---------RYRDFAVLYRTNAQSRVIEEMF----LKANIPYQI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DDLS + ++ P I K+ + Sbjct: 382 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 441 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E + + + + + ++ + +L R+ + Sbjct: 442 LFEALGELEMIGFSTKTAGALAAFRGQLEQWTQLQEYVPVTELVEEVLDQSGYREMLKAE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573 E + LDEFL+ T E + SL +++L +A + V Sbjct: 502 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDLALISDLDELNGTDQAAEGDAVV 561 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 MT+H AKGLE PVVFL+ +F H Sbjct: 562 FMTLHAAKGLEFPVVFLIGMEEGIFPH--------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 L + EE RL YVG+TRA ++L++ Sbjct: 589 -LRSLENEDEMEEERRLAYVGITRAEEELVLT 619 >gi|119510681|ref|ZP_01629809.1| DNA helicase II [Nodularia spumigena CCY9414] gi|119464635|gb|EAW45544.1| DNA helicase II [Nodularia spumigena CCY9414] Length = 774 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 112/624 (17%), Positives = 209/624 (33%), Gaps = 103/624 (16%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 K I+ +++N + + +++ + + F+ + + + Y+E Sbjct: 160 KEIVNKQLNLDDKKFDAR--SVRYAISNAKNQGFSPQEFEREQPNYRGRVIAQVYNCYQE 217 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 +N LDF+DLI+ L ++ D + ++ NHIL+DE QDT+ Q+++IR L Sbjct: 218 KLAENNALDFDDLILVPTRLFQQND---QVLDYWHRKFNHILVDEYQDTNRTQYDLIRLL 274 Query: 200 TEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + K+ R++F VGD QSIYSF A+ +L ++ + + S++ Sbjct: 275 VTNGEESKSAWEWQNRSVFVVGDADQSIYSFRMADVTILLEFQQDFGDGLADDDTR-SMV 333 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL +++ T Sbjct: 334 KLEENYRSCENILQAANELIENNTQRIDKVLKPTR------------------------- 368 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 + +Q + + + A + I N+ + + Sbjct: 369 ---GSGEQIYCHKADNEIEE-------AEFVIGQIRNLAQQNPELD--------WGSFAI 410 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + L Y+I D IKD++A R I + D +S + Sbjct: 411 LYRTNAQSRPFEE----LLVRYQIPYTVVGGMKFYDRKEIKDIIAYLRAIANPADTVSLL 466 Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYIHEL 491 ++ +P + I + +E ++E + A + K I+ Sbjct: 467 RVINTPRRGIGKATIESLVNASYELGTPLWEILSDETSVNTLAGRSAKAVNNFAKMINTC 526 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-EQNSYSSL 547 A + +L Q ++ +E D + E N L+ E++ SL Sbjct: 527 KAQAARVPVSELLQELLNESGYIQDLQNQGTDEAEDRIQNVQELYNAVLQFQEESEDVSL 586 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + V +MT+H++KGLE PVVFLV +F + Sbjct: 587 TAFLQSSALSSDLDN--LKDGQKAVSLMTLHSSKGLEFPVVFLVGLEQGLFPNYRSINNP 644 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA ++L I Sbjct: 645 ----------------------------------ESLEEERRLCYVGITRAQERLYISHA 670 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHN 691 + + Sbjct: 671 RERRLYGSREPAMRSQFLDELPEE 694 >gi|223983369|ref|ZP_03633555.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM 12042] gi|223964541|gb|EEF68867.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM 12042] Length = 1076 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 151/941 (16%), Positives = 297/941 (31%), Gaps = 102/941 (10%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ---CIEERFSLLSS 71 + Q+ I E +L L A Q E L Sbjct: 226 AVEAGRLEDCAVQMQRILYDAYPDKEKQANEVLLFLGKLTPAIQAAKNYDYREYRRALFG 285 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 T+ T + + + K+ L + L + + L Sbjct: 286 AIQTKISTLKDALDFNALRKQLNALAKDLVSRTYSEETLLSDLAL--TYTIIKPLTALTL 343 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 A Y E K+ +DF+D+ +L + A + + + I++DE QD++ + Sbjct: 344 DYLALYAELKETQGGIDFDDMEHFAYQILTAENKLA--AKRYQERFDEIMVDEFQDSNDL 401 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q +I + S +F VGD KQSIY F G +P+ + + Sbjct: 402 QNAIINLI-----------SRGANVFRVGDVKQSIYRFRGGKPQIMRDLMNDVR------ 444 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR---SSRIGQVGTV 308 + I L ++RS I+ + +F N G S+ T + ++ V Sbjct: 445 -PENCFIHLSSNYRSKQMIVDFNNDLFLRLMNIPGCSDQYTDHDCVKTGAPAQKQDNYPV 503 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + + Q + ++ I A+ IA I T Sbjct: 504 EFHALMTKALKEQDEGAENL-----------AANQIKAQYIAQQILTRHETSDFR----- 547 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 Q KD +VLVR + + + I + + A++ L++ R + Sbjct: 548 ---QWKDYVVLVRSHA----VKSHLKQAFDQAGIPYYIDAKAGFYQSEAMQILLSWFRIL 600 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 ++ D+LS +L S + ++++ ++ +R ++ + Sbjct: 601 INPADNLSLTAVLSSDFYQADDEELARLTLKRERRPIFEILKEEHHPLVADR-------- 652 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 L IAQ + ++ + D + SL Sbjct: 653 QRLNDIAQKQGLCALLDALFQIHHFYEE---HCTAQQRTNCDLLRQKAEQYSAEHSDSLT 709 Query: 549 ELISELEQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 ++ ++Q + V++MT+H +KGL+ PVVF S K+ Sbjct: 710 GFLAMIDQVSEEKTSEAIPVGNEDDVVKVMTIHQSKGLQFPVVF--YWASSRIDIMDKKE 767 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK-HLKKSTQEEYNRLLYVGMTRASDQLII 664 I + + +P R + I+ + EE R+LYV +TRA +Q+I+ Sbjct: 768 TCIADADLGVGLPALELPWRFKRPTAIRQAIEYKITLEELEENIRILYVALTRAQNQMIL 827 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 E T ++ D + A S H Sbjct: 828 --VDTVKGELPHKPVTMNTLLDRKGTTDLILS--------------AMCESDSHFWKVRT 871 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-QTFNRG 783 + Q + ++ + P L PS + S + RG Sbjct: 872 IEDRWEVQQLQRRRKEVVSLPRYTEEKPLPVTLTPSETEQTAYIPALFPKSKAVRPAQRG 931 Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843 + +H+ ++ + ++ I S + + LL Sbjct: 932 IQLHEAVERLPEG--EWTESLIRSLL------------PEIKRADLLLLLQLNKQPLFER 977 Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903 V + I G++D ++ + + + ++K+ H + + + + Q Sbjct: 978 CQKMSVDKELSFAVLSGNEFIQGQMDYVAQDENEVILIDFKSDRH--AQADQLKTLYARQ 1035 Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFII-PQNKLNKA 943 +SIY + L + P+K++ L + + P+ +L A Sbjct: 1036 ISIYLRCLHEMIPDKTIHAYLYSFDLDQFIEMTPEAELAAA 1076 >gi|294791935|ref|ZP_06757083.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27] gi|294457165|gb|EFG25527.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27] Length = 729 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 205/615 (33%), Gaps = 117/615 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +YE +KN LDF+DL++ LL+ + + K + +++IDE QDT+ Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSNEA---VLDKYSKRFRYVMIDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + + L + + + VGD QSIY++ GA+ + +L ++ Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + I+L ++RST IL + V E + Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIENNEGRPKKN--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW D + + +T+ + A I TI+ Sbjct: 307 LW------TDKTEGAKIQHFTAQSEHEE--------AAFIGDTIAKKHD---------IH 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D+ +L R + ++ + D IKD++A R + Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482 + DDLS + ++ P + + K+ R +++ + + K + Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYARANGTSLFMTLTQLHLVDTIKGKTKEKLE 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I L+ + + D IL Q + + + E L+ Sbjct: 460 EFGILIFTLVAEMEDKTVLDILESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519 Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + + +++ + ++ + V +MT+H AKGLE P+VFL +F Sbjct: 520 QDTNPNGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H + EE RL YVG+TRA Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717 +L I + + +++ + + + ++ + K + T Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663 Query: 718 HPENTPLEREETIKQ 732 P P+ R E I Sbjct: 664 RPVTKPIVRNEVIAD 678 >gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] Length = 1149 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 170/949 (17%), Positives = 319/949 (33%), Gaps = 117/949 (12%) Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI---NKKSPDLKEKLKKSQDEFIKIRDR 113 + + + + T K QK ++ + L E L+K+ F D+ Sbjct: 255 APPETLHKAAEEFLKIRPTGKLGSQKIWDNDDLIRFREAKTCLIENLEKAVPFFSLYIDK 314 Query: 114 FNTYKMFKST--LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + T +A Y K++ +DF DLI T + L+ + Sbjct: 315 DSRFTASTITFFRDLALVAGYYFDLLHMLKRQANGVDFNDLIQLTREFLQSHQ--DIVAR 372 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 I +IL+DE QDT Q+E+I ++ + G R+LF VGD KQSIY F Sbjct: 373 HIRPRYQYILVDEFQDTDPAQFEIITAIIGELQPGT------RSLFIVGDPKQSIYLFRN 426 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED- 290 A+ R + K ++I L SFRS +++ V+ +FS + + Sbjct: 427 ADVTRFKEAQTRILSD-----CKGNLINLDTSFRSCREVIGCVNYLFSRIFASTEKPWEF 481 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 I+ R G++ + + S+ + +E + + + Sbjct: 482 GYEPIQVCDDRKASPGSITVLLPGKAPKGSERSETKEI-------------EAGMVADLV 528 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 + I + +G R DI +L+ +R T + + Sbjct: 529 HQIVSCGSFQITDRDGVMRPAGYGDIAILIERRTHLTRYTTALSRKET----PFYVHGGI 584 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYE 468 I D+ + F+L D + +L+SP F+FS+ I+ I ++YE Sbjct: 585 GFYSRQEIYDIYNILSFLLRPYDSAALFGVLRSPYFSFSDPLIYHILNVPGAKRRWSLYE 644 Query: 469 YIQKFANCGISK--------------------FQHVIKYIHELIHIAQFCSPHDFFTLIL 508 ++ A ++ + + ++A I+ Sbjct: 645 KLRACAERFCTRPSEIEPSAEILSCSPADQELILRAARLLESWRNLAGREPVVPLVNRII 704 Query: 509 GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567 + + G + L + L + Y SL +L+ ++ +R A Sbjct: 705 RESGILTIYGALEQGEQQAANLTKLLGIIRGRTEGGYYSLFDLVQDMMISIADEEREGEA 764 Query: 568 NHN-----EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + V IMTVH AKGLE PVV L D GS P L Sbjct: 765 ALDTLSKTSVNIMTVHAAKGLEFPVVILPDMGSSREGKLGPILSGDHPHLYGVRIPDPDQ 824 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN----TSNEKKSNQ 678 + + L K+ E RL YVG TRA D L++C S +K +N+ Sbjct: 825 DFDIKETPVYTALSLIQKEKESAERKRLFYVGATRARDHLVLCGKQPDKFYESVDKSNNR 884 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 W ++ + + + + + I T + T + +E + L + Sbjct: 885 IDWVCTLFGITKDIAEEGGVISIDPEDGGKPIDITILTDPDQLTRMWAQEALPPLTLPDE 944 Query: 739 I-------PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL---------SDNQTFNR 782 + L+S + ++ + + I GK S Sbjct: 945 YAKLSGTRKRGLYSDMPDEKATIRPVPVTDIGLLGKATGHEETIHQVTIPGGSHLLPDEI 1004 Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI-TRLLENPMMTTAM 841 G ++H + K+ + SY + E ++ ++ R P++ Sbjct: 1005 GTLLHHIF------SGKDTKSVLVSY------GITSPEAESFCNTLYQRFCSTPLIRD-- 1050 Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTH 900 + S+ EVS + ++GRID++ + + +YK+ E Sbjct: 1051 AVRSFQEVSFI----TYSGNFPVTGRIDRLIQDSRNEWAVIDYKSGDKTGAE-------- 1098 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI---IPQNKLNKAFAE 946 QL++Y + + + L + + + +++ A Sbjct: 1099 -LQLNVYRIA-AEVLTGQPVRMFLYSMKTGEFTEPRFLSDEEIHVALKR 1145 >gi|319765417|ref|YP_004130918.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52] gi|317110283|gb|ADU92775.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52] Length = 724 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 123/692 (17%), Positives = 229/692 (33%), Gaps = 137/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ Q L + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEDVWIST 91 Query: 66 FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + + + + I+ K + + L Sbjct: 92 FHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKDKNIDPKKFEPRTILATISGA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + K +++ + + Y++ +N LDF+DLI+ T L + Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFDR---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I IDE QDT+ Q+ +++ L E F + + AVGD QSI Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL ++V + N + Sbjct: 257 YRWRGADIRNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIAHNVNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + + + + + A Sbjct: 309 KR---------------------LW-------TENPEGKPIVYYEAMNEVDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I + + + +D VL R + +I + I Sbjct: 334 QFVARRIQEAVESGER---------RYRDFAVLYRTNAQSRVIEEMF----LKANIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DDLS + ++ P I K+ + Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E + + + + + ++ + +L R+ + Sbjct: 441 LFEALGELEMIGFSTKTAGALAAFRGQLEQWTQLQEYVPVTELVEEVLDQSGYREMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573 E + LDEFL+ T E + SL +++L +A + V Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDLALISDLDELNGTDQAAEGDAVV 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 MT+H AKGLE PVVFL+ +F H Sbjct: 561 FMTLHAAKGLEFPVVFLIGMEEGIFPH--------------------------------- 587 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 L + EE RL YVG+TRA ++L++ Sbjct: 588 -LRSLENEDEMEEERRLAYVGITRAEEELVLT 618 >gi|331085909|ref|ZP_08334992.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406832|gb|EGG86337.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 741 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 115/604 (19%), Positives = 192/604 (31%), Gaps = 111/604 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 YE K N LDF+DL++ T L + + I +I++DE QDT+ Sbjct: 170 AEAYKEYERQLKANNALDFDDLLVKTVQLFQTQPE---ILEYYQDRFRYIMVDEYQDTNT 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+++I L + + L VGD+ QSIY F GA + +L ++ + Sbjct: 227 VQFKLISLLAAKY----------KNLCVVGDDDQSIYKFRGANIQNILSFEKEFEH---- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST+ IL + V + S L Sbjct: 273 ----TKVIKLEQNYRSTSTILDAANAVIKNNVGRKAKS---------------------L 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W ++ + + + + A I I + Sbjct: 308 W-------TENGEGEKIQFRQFDTAYDE-------AEYIVGDIRERVDNG---------K 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VL R + L I IKDL+A + I + Sbjct: 345 AAYCDHAVLYRTNAQSRLFEEKM----ITANIPYKIVGGVNFYARKEIKDLLAYLKTIDN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFA-----NCGISKFQHV 484 +DDL+ ++ P + +I + + YE + ISK + Sbjct: 401 GKDDLAVRRIINVPKRGIGLTTVNRITEAAQQRGISFYEALCSADLVPGLGRSISKLESF 460 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I A+ S + IL ++ + E + +DEFLN E+ Sbjct: 461 AAMIEYFRKEAEHLSITELMKEILTETGYVEELKAEGEEEAEVRLQNIDEFLNKIAAYEE 520 Query: 542 NSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L L LE+ + V +MT+H+AKGLE P V+L +F Sbjct: 521 SCEEELPTLSGFLEEVALVADIDSLDEESDYVVLMTLHSAKGLEFPYVYLAGMEDGIFPS 580 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 I + EE RL YVG+TRA Sbjct: 581 YMT--------------------------------ITADDPTEIEEERRLCYVGITRAKK 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +L + ++ + + KI + + AY + + Sbjct: 609 ELAMTCARRRMIRGETQYNKMSRFLKEVPPQLLSTGKIVEKEELELPKQNAYVQAKQSFQ 668 Query: 721 NTPL 724 P Sbjct: 669 AKPF 672 >gi|153809769|ref|ZP_01962437.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174] gi|149833947|gb|EDM89027.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174] Length = 744 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 117/739 (15%), Positives = 223/739 (30%), Gaps = 135/739 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + + Sbjct: 28 GAGSGKTRVLTHRIAYLIAEKGVNPWNILAITFTNKAAHEMRERVDKIAGSEGGSVWVST 87 Query: 66 FSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKL-------------KKSQDEFIKI 110 F L + N T L +++ + + Sbjct: 88 FHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLIKEICRKMNIDTKKVKERALLAQISHA 147 Query: 111 RDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +D + + A + Y+ A ++N LDF+DLI T +L + Sbjct: 148 KDELLNPDEMEMNAGADFNQKRAAQVYREYQAALRRNNALDFDDLICKTVELFQN---CG 204 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I++DE QDT+ Q++ + L + L VGD+ QSIY Sbjct: 205 DVLQSYQERFRYIMVDEYQDTNTAQFKFVSLLASRYE----------NLCVVGDDDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA +L +R+ +I L ++RST +IL + V + + Sbjct: 255 RFRGANIGNILGFERVFP--------DAKVIRLEQNYRSTQNILNAANGVIANNTERKEK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW ++ + + + + A Sbjct: 307 T---------------------LW-------TENPEGEKIHFRQFMNGYEE-------AE 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I+ T + + VL R + L I Sbjct: 332 FVVGDIARRHREGT---------AEYHNCAVLYRTNAQSRLFEEK----CLLANIPYKIV 378 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 IKDL+ + + + DDL+ +L P + +I + Sbjct: 379 GGVNFYARKEIKDLLCYLKTVDNAADDLAVRRILNVPKRGIGATTVGRIQDYADMMNISF 438 Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 Y+ ++ +SK + +I L AQ S + I+ + + Sbjct: 439 YDALRVAEEVPSIGRSLSKVDGFVTFIQSLKSKAQAYSVSELLEEIIDLTGYVDELKAED 498 Query: 522 GNEVI---DVLDEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + +DE ++ T+ E+ N ++L + E+ N + V Sbjct: 499 TEEARARVENIDELISKTVSYEETMKAENREATLSGFLEEIALIADIDSVD--ENQDYVV 556 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE P V+L +F Sbjct: 557 LMTLHSAKGLEFPYVYLAGMEDGMFPSSMC------------------------------ 586 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 I +S EE RL YVG+TRA +L + ++ V + Sbjct: 587 --IFSGDQSDLEEERRLCYVGITRAMKELTMTSAQQRMVRGETQYNRVSRFVREIPRELV 644 Query: 694 RVKKIKLTNSINKDEWIAY 712 + + E + Sbjct: 645 DLGHTVQEHKPKIPEAKSP 663 >gi|308172547|ref|YP_003919252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|307605411|emb|CBI41782.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|328552312|gb|AEB22804.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens TA208] gi|328910656|gb|AEB62252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens LL3] Length = 739 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 119/734 (16%), Positives = 233/734 (31%), Gaps = 134/734 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ +++ + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADEIWIST 91 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110 F + L + I + L ++ Sbjct: 92 FHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKERNIDPKKFDPRSILGSISSA 151 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + F T + + A Y++ KN LDF+DLI+ T L ++ Sbjct: 152 KNELIEPEEFAKTAGGYYDQVTSDVYADYQKKLLKNQSLDFDDLIMTTIKLFER---VPE 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ +++ L + VGD QSIY Sbjct: 209 VLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLE----------NICVVGDSDQSIYR 258 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ ++I L ++RST IL ++V N + + Sbjct: 259 WRGADIANILSFEKDYP--------SANVILLEQNYRSTKRILQAANEVIKNNSNRKPKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + S+ S + + + Sbjct: 311 ---------------------LW-------TGNDEGVKLSYYSGDNEFGEG-------QF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I + + + DI +L R + +I ++ Sbjct: 336 VAGKIYELNSSGRR---------KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKD++A R + + +DD+SF ++ P + KI +++ Sbjct: 383 GTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGMSLF 442 Query: 468 EYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + I++ + I L ++ + S + IL + R+ + Sbjct: 443 QAIKQVDFIGVSAKAANALDGFGAMIENLTNMQDYLSITELMEEILDKTEYREMLKAEKS 502 Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRI 574 E + +DEFL+ T EQ + SL +++L + + V + Sbjct: 503 IEAQSRLENIDEFLSVTKNFEQKSEDKSLVAFLTDLALIADIDQLDQKEEESGGKDAVTL 562 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE PVVFL+ VF H Sbjct: 563 MTLHAAKGLEFPVVFLMGMEEGVFPHSRSLMEEAEMEEE--------------------- 601 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 RL YVG+TRA ++L + + ++N + + + Sbjct: 602 -------------RRLAYVGITRAEEELYLTNAKMRTLFGRTNMNPESRFIREIPGDLLE 648 Query: 695 VKKIKLTNSINKDE 708 K + Sbjct: 649 NLNEKKNPRMQPGR 662 >gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16] gi|56909097|dbj|BAD63624.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii KSM-K16] Length = 751 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 110/697 (15%), Positives = 232/697 (33%), Gaps = 133/697 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E + + + + P+ I+ + S+ + + + + ++ S Sbjct: 72 AAREMKDRVAQLVGPIAEDIW--ISTFHSMCVRM-LRRDIDRI-GYSRNFTILDSSDQLS 127 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 ++ +Q P+K + I K +L+ + + ++ Sbjct: 128 VIKQILKSQNVDPKK-FDPKAILGMISAAKNELQTA------------SKFAQIASGVFE 174 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 +A + + YE+ K+N LDF+DLI+ T L + + ++ +I +DE QD Sbjct: 175 QVAADVYSEYEKRLKQNNALDFDDLIMKTIQLFNE---VPEVLDFYQRKFQYIHVDEYQD 231 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L + + VGD QSIY + GA+ + +L ++ Sbjct: 232 TNKAQYRLVKLL----------GDRLQNICVVGDSDQSIYRWRGADIQNILSFEKDYP-- 279 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++I L ++RST IL + V + N + + Sbjct: 280 ------DATVILLEQNYRSTKTILKAANSVIANNGNRKPKN------------------- 314 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ + + + ++ A+ + I Sbjct: 315 --LW------TENDEGAKISVY--------EAATEQAEAQFVVEKIKE---------AAA 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD+ +L R + +I + D IKD++A R Sbjct: 350 EPGFSYKDVAILYRTNAQSRIIEEYF----VKSNLDYNIVGGTKFYDRKEIKDVLAYLRL 405 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481 + + +DD+S ++ P + KI ++++ + + +K Sbjct: 406 VANPDDDISLQRVVNVPKRGIGATTVDKIAAYADAHGLSMFKALGELEQIGVTARARTKL 465 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 ++ +H+ + S + +L R+ + E + +DEF+ T Sbjct: 466 VEFRDQVNNWVHMQDYLSVTELVEELLDKTGYREMLKNEQTIEAQSRLENIDEFITVTQE 525 Query: 539 NE-QNSYSSLQELISELEQYPPTIKRAHSAN---HNEVRIMTVHTAKGLESPVVFLVDTG 594 E ++ L +++L + + +MT+H+AKGLE P VFL+ Sbjct: 526 FEKRSEEKDLVSFLTDLALVADIDQLDKDEEATKKEAITLMTLHSAKGLEFPYVFLIGME 585 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 VF H RL YVG Sbjct: 586 EGVFPHSRSLFEEEEMEEE----------------------------------RRLAYVG 611 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 +TRA +L + + ++N + + Sbjct: 612 ITRAEKRLYLTSAKMRTLYGRTNTNPTSRFIAEIPAE 648 >gi|312144162|ref|YP_003995608.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus'] gi|311904813|gb|ADQ15254.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus'] Length = 715 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 115/588 (19%), Positives = 196/588 (33%), Gaps = 116/588 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 L Y++ K N +DF+DLI T L KK + + +IL+DE QD + Sbjct: 172 ADLYEKYQKQLKANNAVDFDDLIQLTVKLFKKYP---KVLEHYQERFKYILVDEYQDINH 228 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E++ L E + R + VGD Q IY F GA+ + +L + Sbjct: 229 AQYELVNLLAERY----------RNVCVVGDPDQGIYGFRGADIRNILNFEDDYP----- 273 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 II+L ++RS A+IL V + + S L Sbjct: 274 ---DAKIIKLEQNYRSKANILKAAQAVIKNNSSRKEKS---------------------L 309 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + P+ E + + S A + K + Sbjct: 310 W------TEKESGPEIELY--------EAESEKDEADFFCRMAKEL---------KKSKD 346 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D+ VL R + + Y I + L IKD+MA R I + Sbjct: 347 YSYDDMAVLYRTNSQSRAFEDML----MKYGIPYQITGGVRFYERLEIKDIMAYLRLIYN 402 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEY------IQKFANCGISKFQH 483 DD+SF+ + P + KI E+ ++Y+ ++ + Sbjct: 403 PADDISFLRITNRPKRGIGAGTLAKIQQYAETESISLYQAALQSKSNPDLSSSYQKRVLA 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 K I EL + +L R+ N+ + ++E + Sbjct: 463 FTKIIEELREQKDEIALARLTETLLEKSGYRKDLEEEKTNKAETRLENIEELFSVINDYM 522 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + ++ ++L + E+ + V +MT+H+AKGLE PV+FLV +F Sbjct: 523 KNSNENTLAGFLEEVTLMSDIDT--LEEEQSAVTLMTIHSAKGLEFPVIFLVGLEEGIFP 580 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H + ++ EE RL YVGMTRA Sbjct: 581 HANSL----------------------------------YERDGIEEERRLCYVGMTRAM 606 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 D+L + + + + + K + T+ + Sbjct: 607 DRLFLSRAKIRLRFGERQINPPSQFLEEIPEELLIDPKKEKTDIAKEA 654 >gi|299535245|ref|ZP_07048569.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1] gi|298729366|gb|EFI69917.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1] Length = 750 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 102/608 (16%), Positives = 201/608 (33%), Gaps = 114/608 (18%) Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 I+ K + + L + + + YE+ ++N LD Sbjct: 135 IDPKRFEPRAILNAISAAKNECIAADDYAGQMNDKNPYEQTVARVYKGYEKRLRRNQSLD 194 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F+DLI+ T L K+ + + +I +DE QDT+ Q+ +++ L + F Sbjct: 195 FDDLIMTTITLFKR---VPEVLEYYQNKFQYIHVDEYQDTNKSQYLLVQLLAKKF----- 246 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 + + VGD QSIY + GA+ +L ++ +I L ++RST Sbjct: 247 -----KNICVVGDSDQSIYRWRGADIGNILSFEKDYPT--------AKVIMLEQNYRSTK 293 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 IL + V ++ + Sbjct: 294 RILQAANDVIQNNTTRYPKEL----------------------------RTENSEGEKIA 325 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388 ++ + A+ + TI +I + D +L R + + Sbjct: 326 LYKAYNEQEE-------AQFVVQTIQQLIEKENR---------SFDDFAILYRTNAQSRV 369 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 + + ++ D IKDL+A R I + +DDLS ++ P + Sbjct: 370 MEEVL----VKSNMAYQIVGGTKFYDRKEIKDLLAYLRLIANNDDDLSLARIINEPKRSI 425 Query: 449 SEDDIFKI-CTQRHETETVYEYIQKFANC-----GISKFQHVIKYIHELIHIAQFCSPHD 502 K+ + ++++ + + + I + ++ S + Sbjct: 426 GATSFEKMARYAIDQDRSIFDAMNDLVFMGLSGKAANSAEQFYAMIKGFTQMQEYLSVTE 485 Query: 503 FFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYP 558 ++ R + E + ++EFL+ T E++ SL +++L Sbjct: 486 IVEQVIDKSGYRAMLQNEKTIEAESRLENIEEFLSVTKAFEERSDDRSLIAFLTDLALIA 545 Query: 559 PTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 A+ + +MT+H AKGLE PVVF++ +F H Sbjct: 546 DIDALDKEDASKGNIILMTMHAAKGLEFPVVFIIGMEENIFPHSRSLD------------ 593 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + EE RL+YVG+TRA ++L + + + +S+ Sbjct: 594 ----------------------DQDEMEEERRLMYVGVTRAEERLYLTCAQSRTIFGRSS 631 Query: 678 QRTWYDMV 685 + Sbjct: 632 FNNASRFL 639 >gi|126649601|ref|ZP_01721842.1| PcrA [Bacillus sp. B14905] gi|126593926|gb|EAZ87849.1| PcrA [Bacillus sp. B14905] Length = 750 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 98/575 (17%), Positives = 194/575 (33%), Gaps = 114/575 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + YE+ ++N LDF+DLI+ T L K+ + + +I +DE QD Sbjct: 174 QTVARVYKGYEKRLRRNQSLDFDDLIMTTITLFKR---VPEVLEYYQNKFQYIHVDEYQD 230 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L E F + + VGD QSIY + GA+ +L ++ Sbjct: 231 TNKSQYLLVQLLAEKF----------KNICVVGDSDQSIYRWRGADIGNILSFEKDYPN- 279 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST IL + V Sbjct: 280 -------AKVIMLEQNYRSTKRILQAANDVIQNNTTRYPKEL------------------ 314 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 ++ + ++ + A+ + TI ++ + Sbjct: 315 ----------RTENAEGEKIALYKAYNEQEE-------AQFVVQTIQQLMEKENR----- 352 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D +L R + ++ + + D IKDL+A R Sbjct: 353 ----TFDDFAILYRTNAQSRVMEEVL----VKSNMVYQIVGGTKFYDRKEIKDLLAYLRL 404 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC-----GISKF 481 I + +DDLS ++ P + K+ + ++++ + + Sbjct: 405 IANNDDDLSLARIINEPKRSIGATSFEKMARYAIEQDRSIFDAMNDLIFMGLSGKAANSA 464 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + I + ++ S + ++ R + E + ++EFL+ T Sbjct: 465 EQFYAMIKGFTGMQEYLSVTELVEQVIDKSGYRTMLQNEKTIEAESRLENIEEFLSVTKA 524 Query: 539 N-EQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E++ SL +++L A+ + +MT+H AKGLE P+VF++ Sbjct: 525 FEERSDDKSLIAFLTDLALIADIDALDKEDASKGNIILMTMHAAKGLEFPIVFIIGMEEN 584 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H + EE RL+YVG+T Sbjct: 585 IFPHSRSLD----------------------------------DQDEMEEERRLMYVGVT 610 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 RA ++L + + + +S+ + + + Sbjct: 611 RAEERLYLTCAQSRTIFGRSSFNNASRFLGEISED 645 >gi|295093819|emb|CBK82910.1| Superfamily I DNA and RNA helicases [Coprococcus sp. ART55/1] Length = 782 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 122/695 (17%), Positives = 228/695 (32%), Gaps = 134/695 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ + ++ + + + V+ +N + ++ + + Sbjct: 24 GAGSGKTRVITHRVAYLMEHEGVNPLNILAITFTNKAAREMRERVDLIVGDGADRVWVST 83 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQ------------DEFIKI 110 F L L + KN + + + +K LK Q E K Sbjct: 84 FHSLCVRILRRYADKIGYGKNFDIYDSDDQKSTVKSILKDFQIDPKRYPEKMFMAEISKA 143 Query: 111 RDRFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++++ + F A+ A + Y+ KKN +DF+DLI T +L + Sbjct: 144 KEKYLSPDEFAKKNAADYAGTKAAEVYTEYQSRLKKNNAMDFDDLIYKTVELFEHNPD-- 201 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I++DE QDT+ IQ+ +++ L + R L VGD+ QSIY Sbjct: 202 -VLDTYQNRFRYIMVDEYQDTNHIQFLLVKMLARKY----------RNLCVVGDDDQSIY 250 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA +L ++ + +I+L ++RS +IL + V + Sbjct: 251 KFRGANITNILNFEKEYE--------DAKVIKLEQNYRSCGNILAAANAVIQHNAGRKDK 302 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + ++ S+ + Sbjct: 303 A---------------------LW-------TDKDAGEKISFEQCDSEYAEGD------- 327 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I ++ + +DI +L R + + I Sbjct: 328 MVASRIKTLVRQG----------VDYRDIAILYRTNAQSR----VLGEKMVYANIPYRVY 373 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 IKD++A + I + D+L F ++ P E + K+ ++ Sbjct: 374 GGTNFYARKEIKDVLAYLKVINNSTDNLYFRRVVNVPKRGIGEASLSKVESFADAYGLSM 433 Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFIS 519 + + A +K + + I + A S + IL + I+ Sbjct: 434 MDAAARADEIPGMAAKTSAKIRQFAELITSFRDMLADGESLDSVYDRILEDTGYESELIA 493 Query: 520 RFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 E + + +DE N + E N + L E + E+ S + N+V++M Sbjct: 494 EHTEEAMTRLENIDELRNKVVEFTEDNEEAGLSEFLEEIALVSDLDAM--SEDDNQVKLM 551 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P VF+ +VF Sbjct: 552 TLHSAKGLEFPYVFICGMEDRVFPSGMALNSDDPD------------------------- 586 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL YVG+TRA +L + Sbjct: 587 -------ALEEERRLCYVGITRAMKKLYLSAAKER 614 >gi|294793798|ref|ZP_06758935.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44] gi|294455368|gb|EFG23740.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44] Length = 729 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 205/615 (33%), Gaps = 117/615 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +YE +KN LDF+DL++ LL+ + + K + +++IDE QDT+ Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSNEA---VLDKYSKRFRYVMIDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + + L + + + VGD QSIY++ GA+ + +L ++ Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + I+L ++RST IL + V E + Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIENNEGRPKKN--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW D + + +T+ + A I TI+ Sbjct: 307 LW------TDKTEGAKIQHFTAQSEHEE--------AAFIGDTIAKKHD---------IH 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D+ +L R + ++ + D IKD++A R + Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482 + DDLS + ++ P + + K+ R +++ + + K + Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYARANGTSLFMTLTQLHLVDTIKGKTKEKLE 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I L+ + + D IL Q + + + E L+ Sbjct: 460 EFGILIFTLVAEMEDKTVLDILESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519 Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + + +++ + ++ + V +MT+H AKGLE P+VFL +F Sbjct: 520 QDTNPNGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H + EE RL YVG+TRA Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717 +L I + + +++ + + + ++ + K + T Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663 Query: 718 HPENTPLEREETIKQ 732 P P+ R E I Sbjct: 664 RPVTKPIVRNEVIAD 678 >gi|145589486|ref|YP_001156083.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047892|gb|ABP34519.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 1185 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 173/990 (17%), Positives = 336/990 (33%), Gaps = 110/990 (11%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINK--------YVSLSMETGNPTILKKAQTLQQAS 57 G+S + + L LP + + +++ + + L A Sbjct: 226 GISPVDRLTQVLHRL-HLPNPLMVLWDASNALEDLRFLAKCFANSSSQDSDLLEYLLPAI 284 Query: 58 Q----TQCIEERFSLLSSFFLTQK-----------FTPQKNIITQEINKKSPDLKEKLKK 102 + + S L + FLT+ QK + + ++ + + + Sbjct: 285 DCKEQGGSVMDVASTLQTTFLTKDLKYRSNNDKALGALQKYLDAEGLSDRVAEHIAIKQS 344 Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 F + A L + + AH K+ V DF+DL I + L+ Sbjct: 345 WGHSFEAYLLWQAEQDVLAINQAWFALNQSMMAHASAKKENMRVRDFDDLEIGVSTLMAD 404 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 +A+++ ++D + ILIDE QDT+ +QW+++R+ + G + +F VGD Sbjct: 405 AANAAYLQARLDAKYKQILIDEFQDTNPLQWQILRA----WLAGYSAGDDKPKVFIVGDP 460 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 KQSIY F A+P+ K+ + IE + R+ +I V+++F+ + Sbjct: 461 KQSIYRFRRADPRLFESAKQ-----FLHEELGAVYIEQDKTRRNAPEINQAVNRIFTDEQ 515 Query: 283 NAQGLSEDSTTTIRHRSSRI------GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 T+ + G V L + + + ++ Sbjct: 516 IPPEYPYSKQETLWTSPVLDRPGDAYAEQGEVFLLPLIPYAEKLEEVREGSAFDKAIADP 575 Query: 337 PQESS---ASILARRIAYTISNMIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLI 389 Q ++ + + I++++ T + R +A D L+LV++R+ Sbjct: 576 GQTNAAIQRYREGQALGRLINHLLKTRKVPDQADGKTVWRAARASDFLLLVKRRQFLTEY 635 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 R ++ + L + L + DL+AL +++ DL +L+SP+FNF+ Sbjct: 636 ERALRE----AGLAYESSRLGGLLNTLEVDDLIALLTVLVTPRHDLPLAQVLRSPIFNFT 691 Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 E + K+ + + + ++ Q +Y+ + + HD I Sbjct: 692 EKQMQKLAVA-MNADQYRSWWDALQDSQDAQLQTAARYLKHWHLLGERLPVHDLLDRIYQ 750 Query: 510 AKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--------- 556 R ++ + +V+ LD FL L Y SL I E+ Sbjct: 751 EGDVRIKYAAICQEIDRPQVLANLDAFLEVALDQNGGQYPSLSRFIQEINAKRRGDDDET 810 Query: 557 ----------------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + VR+MT+H AKGLESP V L+D + + Sbjct: 811 PDEGDVDATGDENLVELNGENDMSEEDQQQRVRMMTIHGAKGLESPFVILLDANNTDANV 870 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + P + +LI+ K + E LLYV MTRA Sbjct: 871 DYSGVLMDWAPHEQSPSHLSLFTSKTL-TSPRLELIEAEKSIGENENWNLLYVAMTRARQ 929 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 L I + + + K + Sbjct: 930 GLWISGDAQKPTKNNPDGLDKSSW-------------------YGKASNAGIPIAVVPVG 970 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN----PSTIDTKGKTNLESLLSD 776 E K E I + + + N +L+ T++ + + D Sbjct: 971 MEHKEPAHLTKDGAHESAIEDFVLNWLPAIQNHDQLLSDIEGGQTLEVFVGGDKQVDEPD 1030 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 + G H+LL+++ + + + + L+ +T +LE P Sbjct: 1031 PEILEEGNHFHQLLEMMTAQTSAPLMQAMPSKQEIVDWLGIHEDHAEQLIKRVTAVLETP 1090 Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895 + ++ ++ + I S R+D++ ++ I +YK +P E Sbjct: 1091 ALKKYLTDGAWVQAWNELDIASQDGK---SYRMDRLVEFDTHLAIIDYK--LTIPPEGSE 1145 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 + QL+ Y+K+L+ +K LI Sbjct: 1146 QYEKYCKQLANYQKVLEHIRSDKPSKAFLI 1175 >gi|331091397|ref|ZP_08340236.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404261|gb|EGG83808.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 2_1_46FAA] Length = 741 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 97/553 (17%), Positives = 183/553 (33%), Gaps = 115/553 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + YE+ + N LDF+DL++ T L + A + + +I++DE QDT+ Sbjct: 169 VAKVYKEYEKQLRDNNALDFDDLLLKTVQLFQT---QADVLDYYQERFRYIMVDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q+++IR L + + L VGD+ QSIY F GA + +L +++ Sbjct: 226 TVQFQLIRILAGKY----------KNLCVVGDDDQSIYKFRGANIQNILNFEKVF----- 270 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I+L ++RSTA+IL + V + + Sbjct: 271 ---ADARVIKLEQNYRSTANILNAANAVIRHNTGRKDKT--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW ++ + + + + A I I + + Sbjct: 307 LW-------TDNEEGEKIGFRQFDTAFDE-------AEYIVDEIRKGVSG---------K 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 D +L R + + I + IKDL++ + I Sbjct: 344 GYTYSDNAILYRTNAQSRMFEEKFVA----ANIPYKIIEGVNFYARREIKDLLSYLKTID 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQH 483 + +DDL+ ++ P + + ++ + Y+ + +SK + Sbjct: 400 NGKDDLAVRRIINVPKRSIGLTTVNRVQENALERGISFYDALSSADLIDNIGRSLSKIES 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 + I ++ S I+ + + E + ++E + + E Sbjct: 460 FVALIEHFKEQSEKMSLSQLMEEIIEMTGYIESLEAESEIEAETRIENIEELKSKIIAYE 519 Query: 541 QN---SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 ++ +L + E+ N + V +MT+H+AKGLE P V+L + Sbjct: 520 ESCEDEKPTLSGFLEEVALVADVDT--LDENSDYVVLMTLHSAKGLEFPNVYLAGMEDGL 577 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F I EE RL YVG+TR Sbjct: 578 FPSYMT--------------------------------ITADDPMEIEEERRLCYVGITR 605 Query: 658 ASDQLIICKHSNT 670 A L + Sbjct: 606 ARKHLTMTCARRR 618 >gi|16077729|ref|NP_388543.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221308498|ref|ZP_03590345.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221312821|ref|ZP_03594626.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317745|ref|ZP_03599039.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322024|ref|ZP_03603318.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. SMY] gi|7674149|sp|O34580|PCRA_BACSU RecName: Full=ATP-dependent DNA helicase pcrA gi|2577965|emb|CAA75552.1| PcrA protein [Bacillus subtilis subsp. subtilis str. 168] gi|2632975|emb|CAB12481.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 739 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 119/616 (19%), Positives = 208/616 (33%), Gaps = 124/616 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y++ KN LDF+DLI+ T L + + ++ +I +DE QD Sbjct: 171 QVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDR---VPEVLEFYQRKFQYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L E F + L VGD QSIY + GA+ +L ++ Sbjct: 228 TNRAQYMLVKQLAERF----------QNLCVVGDSDQSIYRWRGADITNILSFEKDYPN- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 S+I L ++RST IL ++V N + + Sbjct: 277 -------ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKN------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S+ + + + +A I + T Sbjct: 311 --LW-------TENDEGIKISYYRGDNEFGEG-------QFVAGKIHQLHSTGKR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + DI +L R + +I ++ D IKD++A R Sbjct: 350 ----KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481 + + +DD+SF ++ P + KI + ++ IQ+ + Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDFIGVSAKAANAL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + I L ++ + S + IL + R+ + E + +DEFL+ T Sbjct: 462 DSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKN 521 Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDT 593 EQ + +L +++L + + + +MT+H AKGLE PVVFL+ Sbjct: 522 FEQKSEDKTLVAFLTDLALIADIDQLDQKEEESGGKDAITLMTLHAAKGLEFPVVFLMGL 581 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF H RL YV Sbjct: 582 EEGVFPHSRSLMEEAEMEEE----------------------------------RRLAYV 607 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 G+TRA +L + + ++N + + L N K E A Sbjct: 608 GITRAEQELYLTNAKMRTLFGRTNMNPESRFIA-------EIPDDLLENLNEKKETRATS 660 Query: 714 WSTHHPENTPLEREET 729 P P+ R + Sbjct: 661 ARKMQPRRGPVSRPVS 676 >gi|256821959|ref|YP_003145922.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] gi|256795498|gb|ACV26154.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] Length = 1138 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 157/882 (17%), Positives = 314/882 (35%), Gaps = 83/882 (9%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK----------MFKSTLASLTLAKYLNAH 136 + I K D ++ E+ + + ++ + L + AH Sbjct: 307 KAIIKLKKDEAAEVMAELAEYSAFVEHMAIVRNFPNIHYQDDEWEVIESLTELMRIATAH 366 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 K+ V+DF ++ + + L D + + K+D I+HIL+DE QDTS Q+++I Sbjct: 367 LTIEFKRQGVVDFTEISMAADRALGNIDAPSELALKLDYGISHILVDEFQDTSYGQYQLI 426 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 LT + RTLF VGD QSIY F A ++ + + Sbjct: 427 EKLTAGWQADDG-----RTLFVVGDPMQSIYRFREANVGLFIQARDH-----GIGDIRLE 476 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 ++L +FRS+ ++ V+K F+ + + ++ ++ ++ ++ Sbjct: 477 FLQLTSNFRSSETVVNWVNKSFANIFPSYDDAVLGAVSLAEATATKDSSDEDKVDFKIFF 536 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 DS + Y +A+ A IA I ++ +DI Sbjct: 537 GDDSNSPG-----SDYDSEETITDAATQEANYIAEQIEVLLKEQPE-----------QDI 580 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 VLVR R I + I+ V + L + ++ D++ L R ++ D ++ Sbjct: 581 AVLVRARNHGVAIIEALQ----QRAIAYVAEEFEELAEKQSVLDVLTLLRVLIHPHDKVA 636 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETE----TVYEYIQKFANCGISKFQHVIKYIHELI 492 ++ +LKSP F + D+ I + + T Y + + +S + + + Sbjct: 637 WMALLKSPWFGLTLTDMSLIESVFGDEVYRVLTDYPAVDGLSLQAVSALEKQGAILEKHR 696 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 + G + G I+ + FL+F EQN + + Sbjct: 697 WQLYQQPLAIQLEALWLHLGG--ALSCQPGE--IEQVYTFLDFVSGYEQNQI--ITDYNP 750 Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 L +H V IMT+H +KGLE VFL ++ + Sbjct: 751 LLLAMSKLHAPPSREDHCRVSIMTMHKSKGLEFDTVFLPQLNKGSGNNDKQLMVWEEFPA 810 Query: 613 NDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 DD + P + N++ + ++ + E RLLYV TRA +L + Sbjct: 811 QDDSSQYLMAPVDQVGESNSLYKFVNDFSRQKNRLESGRLLYVASTRAKRRLFLTCCGAV 870 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 S +K + +DS N R + E + E + ++ + + Sbjct: 871 SYNQKEERLKVGSFGHDSLMNLLRPIYETFI----ESEVLRLELNEEADHSSEQILDHSW 926 Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790 ++L + + + L + +E + + G+++H+ L Sbjct: 927 QRLKA-----DWSYPKLSDSFKGIKSLLEKNSIIAEQATIEFDWATDVAKTIGVLMHRQL 981 Query: 791 QVIFTL-----PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR----LLENPMMTTAM 841 ++I + R Y + + K + I + +L +P + Sbjct: 982 ELISKGLWQLNQQSIRDYAAAMYEQLLSSGYNEKNARYAQQRIEQGLTNVLNDPKAQWIL 1041 Query: 842 SCDSY---SEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIE--- 894 S E++++G ++ K + ID+ + + +I +YKT H+ +I Sbjct: 1042 SAQHQDSACELALTGVVDGEYKAFV----IDRTFVDEEGTRWIVDYKTGSHLGDDIAGFI 1097 Query: 895 -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + AQL Y+ ++ + + L + + + Sbjct: 1098 QSEKERYQAQLEQYKTLMAQID-QRPIKLALYFPMMKRFEEL 1138 >gi|311067135|ref|YP_003972058.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942] gi|310867652|gb|ADP31127.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942] Length = 739 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 125/757 (16%), Positives = 242/757 (31%), Gaps = 145/757 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ +++ Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADDIWIST 91 Query: 66 FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + + + + I+ K D + L Sbjct: 92 FHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKERNIDPKKFDPRSMLGSISSA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ D K + + Y++ KN LDF+DLI+ T L + Sbjct: 152 KNELIDPEEYAKSAGGYYD--QVVSDVYTDYQKKLLKNQSLDFDDLIMTTIKLFDR---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ +++ + + F + + VGD QSI Sbjct: 207 PEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKQMAKRF----------QNICVVGDSDQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ S+I L ++RST IL ++V N + Sbjct: 257 YRWRGADIANILSFEKDYPN--------ASVILLEQNYRSTKRILHAANEVIKNNSNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW + + S+ + + Sbjct: 309 KN---------------------LW-------TENDDGIKISYYRGDNEFGEG------- 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I + + + DI +L R + +I ++ Sbjct: 334 QFVAGKIHQLSSSGKR---------RLSDIAILYRTNAQSRVIEETL----LKAGLNYNI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R + + +DD+SF ++ P + KI + Sbjct: 381 VGGTKFYDRKEIKDILAYLRLVSNPDDDISFNRIVNVPKRGVGATSMNKIAEYAAMNGMS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +++ + + + + I L ++ + S + IL + R+ + Sbjct: 441 LFQALGQVDFIGVSAKAANALDSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEV 572 E + +DEFL+ T EQ + +L +++L + + V Sbjct: 501 KSIEAQSRLENIDEFLSVTKNFEQKSEDKTLVAFLTDLALIADIDQLDQQEEESGTNDAV 560 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFL+ VF H Sbjct: 561 TLMTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEE------------------- 601 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 RL YVG+TRA +L + + ++N + Sbjct: 602 ---------------RRLAYVGITRAEQELYLSNAKMRTLFGRTNMNPESRFIS------ 640 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729 + L N K E A P P+ R + Sbjct: 641 -EIPDELLENLNEKKETRAASARKMQPRRGPVSRPVS 676 >gi|238917480|ref|YP_002930997.1| hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750] gi|238872840|gb|ACR72550.1| Hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750] Length = 822 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 114/625 (18%), Positives = 206/625 (32%), Gaps = 127/625 (20%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SLTLAKYLNAHYEEAKK 142 +++N + LKE+ + +D T F+ +A + Y++ K Sbjct: 124 KKMNIDTKMLKER--AIMSKISSAKDELKTPDEFELEAGNDYNLRRIAG-VYREYQKTLK 180 Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 N LDF+DLI T +L + A + +I++DE QDT+ Q++++ L Sbjct: 181 LNNALDFDDLIFKTVELFQSD---AEVLEHYQDRFRYIMVDEYQDTNTSQFKLVAMLAAK 237 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 + + VGD+ QSIY F GA +L + + +I+L Sbjct: 238 Y----------GNICVVGDDDQSIYKFRGANIYNILNFENVF--------TGAKVIKLEQ 279 Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322 ++RST IL + V S + S LW Sbjct: 280 NYRSTQTILNAANAVISNNIGRKSKS---------------------LW-------TDNG 311 Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382 ++ ++T Y + + A +A I+ + D+ +L R Sbjct: 312 EGEKVNYTLYENGYDE-------AEGVASGIAEYVRDG----------WNYNDVAILYRT 354 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 + + + I IKD++A + I + D + ++ Sbjct: 355 NAQSRALEEKL----MIHNIPYKIYGGQNFYQRKEIKDILAYLKTIDNGLDGQAVKRIIN 410 Query: 443 SPLFNFSEDDIFKICTQRH-ETETVYEY------IQKFANCGISKFQHVIKYIHELIHIA 495 P I ++ T +E I N +SK + + I L Sbjct: 411 VPKRGIGNTTIDRLQEYADFNDITFWEALVNAKDIDTIKNAALSKLEPFVDLIGRLRAKE 470 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQN-----SYSS 546 +F S + ++ + E + LDEF+N + E++ + Sbjct: 471 EFMSLKELAEAVIEDTGYIESLSQNETVEEVEARRENLDEFINKVVSYEESCKEAGEEPT 530 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L L+ E+ S H V +MT+H+AKGLE P+V++ +F Sbjct: 531 LSGLLEEVALIADIDNLDESEPH--VMLMTLHSAKGLEFPIVYMTGMEDGLFPSYMT--- 585 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 I + EE RL YVG+TRA L + Sbjct: 586 -----------------------------IVSDDSTEIEEERRLCYVGITRAEKILNLTS 616 Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHN 691 + ++ + + + Sbjct: 617 AKSRMVRGETQMNKVSRFINEIPKD 641 >gi|154685156|ref|YP_001420317.1| PcrA [Bacillus amyloliquefaciens FZB42] gi|154351007|gb|ABS73086.1| PcrA [Bacillus amyloliquefaciens FZB42] Length = 739 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 119/734 (16%), Positives = 233/734 (31%), Gaps = 134/734 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ +++ + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADEIWIST 91 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110 F + L + I + L ++ Sbjct: 92 FHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKERNIDPKKFDPRSILGSISSA 151 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + F T + + Y++ KN LDF+DLI+ T L ++ Sbjct: 152 KNELIEPEEFAKTAGGYYDQVTSDVYTDYQKKLLKNQSLDFDDLIMTTIKLFER---VPE 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ +++ L + VGD QSIY Sbjct: 209 VLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLE----------NICVVGDSDQSIYR 258 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ ++I L ++RST IL ++V N + + Sbjct: 259 WRGADIANILSFEKDYP--------SANVILLEQNYRSTKRILQAANEVIKNNSNRKPKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + S+ S + + + Sbjct: 311 ---------------------LW-------TENDEGIKLSYYSGDNEFGEG-------QF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I + + + DI +L R + +I ++ Sbjct: 336 VAGKIYELHSSGRR---------KLSDIAILYRTNAQSRVIEETL----LKSGLNYNIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKD++A R + + +DD+SF ++ P + KI +++ Sbjct: 383 GTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGMSMF 442 Query: 468 EYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + I++ + I L ++ + S + IL + R+ + Sbjct: 443 QAIKQVDFIGVSAKAANALDGFGAMIENLTNMQDYLSITELTEEILEKTEYREMLKAEKS 502 Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRI 574 E + +DEFL+ T EQ + SL +++L + + V + Sbjct: 503 IEAQSRLENIDEFLSVTKNFEQKSEDKSLVAFLTDLALIADIDQLDQKEEESGGKDAVTL 562 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE PVVFL+ VF H Sbjct: 563 MTLHAAKGLEFPVVFLMGMEEGVFPHSRSLMEEAEMEEE--------------------- 601 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 RL YVG+TRA ++L + + ++N + + + Sbjct: 602 -------------RRLAYVGITRAEEELYLTNAKMRTLFGRTNMNPESRFIREIPGDLLE 648 Query: 695 VKKIKLTNSINKDE 708 K T + Sbjct: 649 NLNEKKTPRMQPGR 662 >gi|222151885|ref|YP_002561045.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402] gi|222121014|dbj|BAH18349.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402] Length = 721 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 116/724 (16%), Positives = 232/724 (32%), Gaps = 130/724 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + VS + ++ + + Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKDVSPYKILAITFTNKAAKEMKERVKKIIGDESDVIWIST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK+ E + Sbjct: 88 FHSMCVRILRRDIDRIGIERNFTILDPTDQRSVVKDILKRENIDPKKYDPRMFVAEISNL 147 Query: 111 RDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + + + + A Y+ KN LDF+DLI+ T L ++ Sbjct: 148 KNEMKSPDDAIEAASDFMGMMISKVYAEYQRVLLKNHALDFDDLIMTTIQLFER---VPE 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ +++ L + F + + VGD QSIY Sbjct: 205 VLDYYQSKFQYIHVDEYQDTNRAQYLLVKMLADKF----------KNICVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L + ++ I L ++RST +IL ++V + + Sbjct: 255 WRGADIYNILSFEDDY--------KEAKTIFLERNYRSTKNILFAANEVIKNNTERKPKA 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 307 ---------------------LW-------TDNDHGSKINYYKAMSERAE-------AEY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I K+ D+ +L R + +I IS Sbjct: 332 IVAEI----------LKKKRENYALSDMAILYRTNAQSRVIEETL----MKSNISYTMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKDL++ R + + +D+SF ++ +P + KI H + + Sbjct: 378 GTKFYDRKEIKDLLSYLRLVANSNEDISFTRIINTPKRGIGPGALDKIITYAEHNGLSYF 437 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + K + L+ +F S + ++L + + Sbjct: 438 DALAEVDFIGLPKKTTEKLVEFYTMMDNLMKQQEFLSITELTQMLLDKSGYMKMLEAENT 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E I+ + EF+N E+++ Q LI+ L ++ V +MT+H+ Sbjct: 498 LESQSRIENIQEFMNVPKDYEKDTPVEEQSLINFLTDLQLVADVDNADLEAGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE VVF+ +F H Sbjct: 558 AKGLEFKVVFIAGLEESIFPHSRSLNS--------------------------------- 584 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 S EE RL+YV +TRA + L + + ++ + + + V + Sbjct: 585 -DSEMEEERRLMYVAITRAEEHLYLSHAEMRNLFGRTQANKKSRFISEIPEDILDVPVAR 643 Query: 700 LTNS 703 + Sbjct: 644 KIPA 647 >gi|328957929|ref|YP_004375315.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4] gi|328674253|gb|AEB30299.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4] Length = 748 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 114/708 (16%), Positives = 233/708 (32%), Gaps = 132/708 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAKEMKERVTRLMKEGGSDVWVST 90 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + F + Q+ ++ + + +++ D K+ + E Sbjct: 91 FHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILKERNIDPKKYNPRAILGEISNA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ +T ++ S + Y+ ++N +DF+DLI+ L K+ + Sbjct: 151 KNELDTPVDYRKRAGSFFEKIVADCYDDYQRELRRNQAVDFDDLIMLAIRLFKESPET-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L E F + L VGD QSIY Sbjct: 209 -LDYYQNKFHYIHVDEYQDTNEAQYTLVNMLAERF----------KNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + + L ++RST IL + V + Sbjct: 258 WRGANMENILNFEKDYP--------DATTVLLEQNYRSTKFILQAANDVIGNNSKRKVKK 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ ++ + S +R Sbjct: 310 ---------------------LW-------TDNHDGEKITYY-------RGQSEGDESRY 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D VL R + +I I Sbjct: 335 VISKIQEEMKE---------NNYNYGDFAVLYRTNAQSRVIEDSL----LKSNIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET--- 465 D I+D++A R I + +D++SF ++ P I K+ T ++ + Sbjct: 382 GHKFYDRKEIRDVLAYLRLIANPDDNMSFERVVNVPKRGIGPGTIEKLRTSSNQYDWSLL 441 Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + I + S+ + + +L + ++ + +L ++ Sbjct: 442 ETALNVSITPISGKAASELEGFGFMMKDLRQMQEYVPVTELVEEVLKRSGYQKSLELERT 501 Query: 523 NE---VIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E ++ + EFL T + E+ SL +++L +EV +MT+ Sbjct: 502 LESETRLENIQEFLTVTQQFEKENTEDKSLLTFLTDLALVSDLDNLE-EEPQSEVTLMTL 560 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H AKGLE P+VFL+ +F Sbjct: 561 HAAKGLEFPIVFLIGLEEGIFPLS----------------------------------RS 586 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 +++ EE RL YVG+TRA +L I + ++ + + Sbjct: 587 MMEEDQLEEERRLAYVGITRAEKKLYITNAYSRVLYGRTQSNSASRFI 634 >gi|227514157|ref|ZP_03944206.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum ATCC 14931] gi|227087528|gb|EEI22840.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum ATCC 14931] Length = 1337 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 155/1143 (13%), Positives = 319/1143 (27%), Gaps = 227/1143 (19%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 G +S + L PL Q+ ++ + E G ++ + T + Sbjct: 202 EEGADPRQSAF-FKRLLEPLVGPQLKELRDQWAALGEVGPARFAEQIEEDLAKLATTVDD 260 Query: 64 E-----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTY 117 + + L+ + F P+ + + + D + +D+ + D + Sbjct: 261 QGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPELLDELGVQRGGLRDQLGDLHDTYFFQ 320 Query: 118 KMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR---- 163 +A HY+ K+ +LDF DL +L Sbjct: 321 SAADLVKYGQKAGALIEILTRVATDFRCHYQIIKQDRRLLDFSDLEHYAYAILTGENINP 380 Query: 164 -------------DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 +A ++ ++ + I+IDE QDT+ + +D + Sbjct: 381 KVTWSDEEAWAKRQAAAQVQAELQRHYKEIMIDEYQDTNRL---------QDDLLRLLHK 431 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 S F VGD KQSIY F A+P GQ ++L ++RS ++ Sbjct: 432 SGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSAD----GQSSEALDLSDNYRSRHEV 487 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCNPQQESW 329 +V+ +F + Q + Q + + Sbjct: 488 TDLVNLIFEQLMDQQLGEMVYDDKASLKPKADWGADRDQASPATPELLLFDGGVKKTTAN 547 Query: 330 TSYFDSLPQESSASILA---RRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384 + D++ +A I I ++ +TI + R I DI +L R ++ Sbjct: 548 PTGEDAIVVRQPEDKVASEVWLIGQRIRELLAKETILDPETKRVRPITPGDIAILSRAKR 607 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 I + + V+ + I+ +M+L + I + D+ +L+SP Sbjct: 608 ----IHSVIAEQFAKLNLPVMVHGVENYFKATEIRVVMSLLKVIDNPYQDVPLAAVLRSP 663 Query: 445 L-------------------FNFSEDDIFKI--------------CTQRHETETVYEYIQ 471 L F+E ++ + + E ++ Sbjct: 664 LIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVVQQNYYAWRDQEVEAVE 723 Query: 472 KFANCGISKFQH----------------------------VIKYIHELIHIAQFCSPHDF 503 + + L +AQ D Sbjct: 724 NHDALTEEELAERVAGDPAGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPLVDL 783 Query: 504 FTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562 I A G + L E++ + L + I +EQ Sbjct: 784 IWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQKKND 843 Query: 563 RAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND--DP 616 A + + +MT+H +KGL+ P+VFLV+T Q + + + L Sbjct: 844 DLGEATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVD 903 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---- 672 + K + L + K+ + E RLLYV +TRA +L I + ++ Sbjct: 904 STANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADLTKK 963 Query: 673 -----------------EKKSNQRTWYDMVYDSFHNDERVKKIKL--------------- 700 + ++ D + + ++ Sbjct: 964 MDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAAAPLRGLTKA 1023 Query: 701 --------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + + + T +Q + + P + Sbjct: 1024 AYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQVATQ 1083 Query: 753 EPYILNPSTIDTKGKTNLESLLS------------------------------------- 775 ST+ + L Sbjct: 1084 TTAFQAVSTVREAFARQDPTNLEMGRLEIDRDQIKESGAYLAPEERAFENPAFITGASDQ 1143 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNL-LLSITRLL 832 + G H + Q + + T++ + + + + + Sbjct: 1144 EPTGTAIGTATHLIFQKLPLTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVAGVVSFY 1203 Query: 833 ENPMMTTAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFI 880 + + + + EV S ++ +++I G ID I + Sbjct: 1204 QTGLGQVITAHPEQVHREVPFSMLLSAHDLFSGIGATDDSEVLIHGIIDGYVQHDDQIDL 1263 Query: 881 FEYKTHH----HVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFI 934 F+YKT H ++++ + + QL +Y L P + + L + +V Sbjct: 1264 FDYKTDRISQAHPEEDLQELADKYSGQLVLYADALTKMTGVPLEKIHRHLYFTRAKRVVT 1323 Query: 935 IPQ 937 + Sbjct: 1324 LSA 1326 >gi|327438551|dbj|BAK14916.1| superfamily I DNA and RNA helicase [Solibacillus silvestris StLB046] Length = 752 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 104/622 (16%), Positives = 207/622 (33%), Gaps = 117/622 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y++ ++N LDF+DLI+ T L K+ + + + +I +DE QD Sbjct: 174 KIVAQVYKGYQKRLRQNQSLDFDDLIMLTIRLFKE---APDVLEFYQNKFQYIHVDEYQD 230 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L + F R + VGD QSIY + GA+ +L ++ Sbjct: 231 TNKSQYLLVQLLAKKF----------RNICVVGDSDQSIYRWRGADISNILSFEKDY--- 277 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ +I L ++RST IL + V ++ Sbjct: 278 -----KEAKVIMLEQNYRSTKRILQAANSVIEKNKDRYKKVL------------------ 314 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + + A+ + TI ++ + Sbjct: 315 ----------RTENPEGEMIQLYKAGNEQDE-------AQYVVRTIQKLMKDE------- 350 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + ++ + ++ D IKDL+A R Sbjct: 351 --DYKLDDFAILYRTNAQSRVMEDVL----VKSNMNYQIVGGTKFYDRKEIKDLLAYLRL 404 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGIS-----KF 481 I + +DDLS ++ P K + ++++ + + G+S Sbjct: 405 IANNDDDLSLARIINEPKRAIGATSFDKMLVYAMERDRSIFDAMGELVFMGLSGKAATSA 464 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 ++ I L + S + +L RQ + E + ++EFL T Sbjct: 465 ENFYNMIRSLSDRQRELSVTEIVEEVLERSGYRQMLKAEKSIEAESRLENIEEFLTVTQA 524 Query: 539 NE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E ++ SL +++L + +MT+H AKGLE PVVF++ Sbjct: 525 FEARSEDQSLVAFLTDLALIADIDSLDEEEKAKGTIILMTMHAAKGLEFPVVFIIGMEEN 584 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H + E RL+YVG T Sbjct: 585 IFPHSRSL----------------------------------ESEDEMAEERRLMYVGAT 610 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA +L + + + ++ + DE V + + + + + Sbjct: 611 RAEQRLYLSCAGSRTIFGRTGYNAPSRFLR---EIDENVLEQVSKANTTSYRDDSLPFKS 667 Query: 717 HHPENTPLEREETIKQLMDEQK 738 + + P +++ + Sbjct: 668 NRYDRMPNRSLGSVQAPASQTS 689 >gi|189485729|ref|YP_001956670.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287688|dbj|BAG14209.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 772 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 104/671 (15%), Positives = 214/671 (31%), Gaps = 125/671 (18%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y++ ++ +DF DLI+ T L++ + + ++ +I++DE QDT+ Sbjct: 172 VAKIYELYQKKLERADAMDFGDLIMRTVSALQRH---SELLEYYREKYKYIMVDEYQDTN 228 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ I+ L + + VGD+ QS+YS+ GA+ +L ++ Sbjct: 229 HAQYIFIKLLAGKY----------HNVCVVGDDDQSVYSWRGADINNILDFEKDYPN--- 275 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++L ++RST IL+ ++V + G+V Sbjct: 276 -----AKSVKLEQNYRSTPKILSTANQVVKYNNARISKRLWTQNP---------DNGSVT 321 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + + V + A I+ +I +SN Sbjct: 322 VLKAVNENDE------------------------------AVKIAELI-----YSNAYDN 346 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D V R + R +I D IKD++A + I Sbjct: 347 KCKFSDYAVFYRTNAQSRTFEDTFR----LSRIPYAIVGTLRFYDRAEIKDVIAYLKLIY 402 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEY-----IQKFANCGISKFQH 483 + D++SF ++ P + I + + ++++ Sbjct: 403 NPNDNVSFKRVINIPRRGIGKTSIETLENFAQLKNMSIWQSVPFAQEAGLTKGPAEALNS 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNE 540 ++I + + S ++ + ++ + E I+ + E ++ E Sbjct: 463 FAQFIKDFSTLKNSGSVKLIVEKVITDSEYLKELEAENTPESKIKIENIQELISAVDDFE 522 Query: 541 QNS--YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +N SL ++++ + +V +MT+H AKGLE VF+ +F Sbjct: 523 KNRSLDKSLAGYLTQIALMNDADSPD--ESKGKVTLMTLHLAKGLEFDNVFICGLEEGLF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 EE RL+YVGMTRA Sbjct: 581 PMG----------------------------------ESAFNDKELEEERRLMYVGMTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 L +C + K + ++ DE + + ++ ++ Sbjct: 607 RKCLYLCWSTERKVYGKIIWNMPSRFIAEAGFKDE-------SAEMEQNRKQNFQNRLSQ 659 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST-IDTKGKTNLESLLSDN 777 N + ++ + + + KK F N S+ + ++ D Sbjct: 660 GFNRTIIHSDSFGREQNFRSFNKKSFKAEIVYTNAGSYGYMSSGGEITKAERFDNPAEDL 719 Query: 778 QTFNRGLII-H 787 + G + H Sbjct: 720 SPYKIGTAVSH 730 >gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] gi|56378652|dbj|BAD74560.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] Length = 724 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 122/692 (17%), Positives = 229/692 (33%), Gaps = 137/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ Q L + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEDVWIST 91 Query: 66 FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + + + + I+ K + + L Sbjct: 92 FHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKDKNIDPKKFEPRTILATISGA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + K +++ + + Y++ +N LDF+DLI+ T L + Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFDR---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I IDE QDT+ Q+ +++ L + F + + AVGD QSI Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLADRF----------QNICAVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL ++V + N + Sbjct: 257 YRWRGADIRNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIAHNVNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + + + + + A Sbjct: 309 KR---------------------LW-------TENPEGKPIVYYEAMNEVDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I + + + +D VL R + +I + I Sbjct: 334 QFVARRIQEAVESGER---------RYRDFAVLYRTNAQSRVIEEMF----LKANIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DDLS + ++ P I K+ + Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E + + + + + ++ + +L R+ + Sbjct: 441 LFEALGELEMIGFSAKTAGALAAFRGQLEQWTQLQEYVPVTELVEEVLDQSGYREMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573 E + LDEFL+ T E + SL +++L +A + V Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDLALISDLDELNGTDQAAEGDAVV 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 MT+H AKGLE PVVFL+ +F H Sbjct: 561 FMTLHAAKGLEFPVVFLIGMEEGIFPH--------------------------------- 587 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 L + EE RL YVG+TRA ++L++ Sbjct: 588 -LRSLENEDEMEEERRLAYVGITRAEEELVLT 618 >gi|321314390|ref|YP_004206677.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5] gi|320020664|gb|ADV95650.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5] Length = 739 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 119/616 (19%), Positives = 208/616 (33%), Gaps = 124/616 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y++ KN LDF+DLI+ T L + + ++ +I +DE QD Sbjct: 171 QVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDR---VPEVLEFYQRKFQYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L E F + L VGD QSIY + GA+ +L ++ Sbjct: 228 TNRAQYMLVKQLAERF----------QNLCVVGDSDQSIYRWRGADITNILSFEKDYPN- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 S+I L ++RST IL ++V N + + Sbjct: 277 -------ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKN------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S+ + + + +A I + T Sbjct: 311 --LW-------TENDEGIKISYYRGDNEFGEG-------QFVAGKIHQLHSTGKR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + DI +L R + +I ++ D IKD++A R Sbjct: 350 ----KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481 + + +DD+SF ++ P + KI + ++ IQ+ + Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDFIGVSAKAANAL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + I L ++ + S + IL + R+ + E + +DEFL+ T Sbjct: 462 DSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKN 521 Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDT 593 EQ + +L +++L + + + +MT+H AKGLE PVVFL+ Sbjct: 522 FEQKSEDKTLVAFLTDLALIADIDQLDQKEEESGGKDAITLMTLHAAKGLEFPVVFLMGL 581 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF H RL YV Sbjct: 582 EEGVFPHSRSLMEEAEMEEE----------------------------------RRLAYV 607 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 G+TRA +L + + ++N + + L N K E A Sbjct: 608 GITRAEQELYLTNAKMRTLFGRTNMNPESRFIA-------EIPDDLLENLNEKKETRATS 660 Query: 714 WSTHHPENTPLEREET 729 P P+ R + Sbjct: 661 ARKMQPRRGPVSRPVS 676 >gi|303240584|ref|ZP_07327099.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2] gi|302591821|gb|EFL61554.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2] Length = 739 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 106/614 (17%), Positives = 192/614 (31%), Gaps = 126/614 (20%) Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 + L + +KN + + + K++L F K Sbjct: 112 DYTDQQTVVKDCLKELNLNEKNYPPKSMLEMIGRAKDELIDPVTYGKMYAADFRMAK--- 168 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + Y++ K+N +DF+D+I+ T L + ++ +IL Sbjct: 169 --------VAKIYELYQKKLKQNNAVDFDDIIMLTIKLFSNYPD---VLDYYQRKFKYIL 217 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT+ Q+ +I L++ R L VGD+ QSIY + GA + +L + Sbjct: 218 VDEYQDTNSAQYSLISMLSQ----------RSRNLCVVGDDDQSIYGWRGANIRNILDFE 267 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I+L ++RST IL + V + S Sbjct: 268 KEF--------SGCKTIKLEQNYRSTQTILDAANCVIKNNYGRKNKS------------- 306 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW ++ + + A IA I + Sbjct: 307 --------LW-------TENKGGEKIRHCECSNEHEE-------AYFIANEIKKL----- 339 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 + +Q KD +L R + ++ + I+ D IKDL Sbjct: 340 ----STIKDMQYKDFAILYRVNAMSRVVEEML----IKEGIAYKIFGGLKFYDRKEIKDL 391 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479 +A R I + D++S + P I + I A+ Sbjct: 392 IAYLRLIQNPSDNISLKRSINEPKRGIGTTTIETAERLANSKGVSIFSIISSASEIPDLA 451 Query: 480 ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEF 532 K + + I L + + + ++ ++ + E + + E Sbjct: 452 RAASKLEGFVAMISRLRILKESMKVSELIQEVIEQSGIQRSYEEEDTIEAQSRIENIKEL 511 Query: 533 LNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 ++ L E +N SL++ ++ + N + V +MT+H+AKGLE PVVF+V Sbjct: 512 VSVALEFEAKNEEQSLEDFLANVSLVADIDNMD--ENGDYVVLMTLHSAKGLEFPVVFMV 569 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 +F Sbjct: 570 GMEEGIFPGYRSMSDESELEEERRL----------------------------------C 595 Query: 652 YVGMTRASDQLIIC 665 YVG+TRA +L + Sbjct: 596 YVGITRAKQKLYLT 609 >gi|169825828|ref|YP_001695986.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41] gi|168990316|gb|ACA37856.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41] Length = 749 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 97/575 (16%), Positives = 194/575 (33%), Gaps = 114/575 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + YE+ ++N LDF+DLI+ T L K+ + + +I +DE QD Sbjct: 174 QTVARVYKGYEKRLRRNQSLDFDDLIMTTITLFKR---VPEVLEYYQNKFQYIHVDEYQD 230 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L + F + + VGD QSIY + GA+ +L ++ Sbjct: 231 TNKSQYLLVQLLAKKF----------KNICVVGDSDQSIYRWRGADIGNILSFEKDYPN- 279 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST IL + V Sbjct: 280 -------AKVIMLEQNYRSTKRILQAANDVIQNNTTRYPKEL------------------ 314 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 ++ + ++ + A+ + TI ++ + Sbjct: 315 ----------RTENAEGEKIALYKAYNEQEE-------AQFVVQTIQQLMEKENR----- 352 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D +L R + ++ + + D IKDL+A R Sbjct: 353 ----TFDDFAILYRTNAQSRVMEEVL----VKSNMVYQIVGGTKFYDRKEIKDLLAYLRL 404 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC-----GISKF 481 I + +DDLS ++ P + K+ + ++++ + + Sbjct: 405 IANNDDDLSLARIINEPKRSIGATSFEKMARYAIEQDRSIFDAMNDLIFMGLSGKAANSA 464 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + I + ++ S + ++ R + E + ++EFL+ T Sbjct: 465 EQFYAMIKGFTEMQEYLSVTEIVEQVIDKSGYRTMLQNEKTIEAESRLENIEEFLSVTKA 524 Query: 539 N-EQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E++ SL +++L A+ + +MT+H AKGLE P+VF++ Sbjct: 525 FEERSDDKSLIAFLTDLALIADIDALDKEDASKGNIILMTMHAAKGLEFPIVFIIGMEEN 584 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H + EE RL+YVG+T Sbjct: 585 IFPHSRSLD----------------------------------DQDEMEEERRLMYVGVT 610 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 RA ++L + + + +S+ + + + Sbjct: 611 RAEERLYLTCAQSRTIFGRSSFNNASRFLGEISED 645 >gi|313893297|ref|ZP_07826872.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158 str. F0412] gi|313442193|gb|EFR60610.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158 str. F0412] Length = 729 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 206/615 (33%), Gaps = 117/615 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +YE +KN LDF+DL++ LL+ + + K + +++IDE QDT+ Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSNEA---VLDKYSKRFRYVMIDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + + L + + + VGD QSIY++ GA+ + +L ++ Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + I+L ++RST IL + V E + Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIENNEGRPKKN--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW D + + +T+ + A I TI+ Sbjct: 307 LW------TDKTEGAKIQHFTAQSEHEE--------AAFIGDTIAKKHD---------IH 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D+ +L R + ++ + + D IKD++A R + Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYIMVGGTKFYDRKEIKDVLAYLRVLY 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482 + DDLS + ++ P + + K+ R +++ + + K + Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYARANGTSLFMTLTQLHLVDSIKGKTKEKLE 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I L+ + + D I+ Q + + + E L+ Sbjct: 460 EFGILIFTLVAEMEDRTVLDILESIIDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519 Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + S +++ + ++ + V +MT+H AKGLE P+VFL +F Sbjct: 520 QDTNPSGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H + EE RL YVG+TRA Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717 +L I + + +++ + + + ++ + K + T Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663 Query: 718 HPENTPLEREETIKQ 732 P P+ R E I Sbjct: 664 RPVTKPIVRNEVIAD 678 >gi|269798061|ref|YP_003311961.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008] gi|282850288|ref|ZP_06259667.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745] gi|269094690|gb|ACZ24681.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008] gi|282579781|gb|EFB85185.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745] Length = 729 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 108/615 (17%), Positives = 204/615 (33%), Gaps = 117/615 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +YE +KN LDF+DL++ LL+ A + K +++IDE QDT+ Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSN---ATVLDKYSHRFRYVMIDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + + L + + + VGD QSIY++ GA+ + +L ++ Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + I+L ++RST IL + V E + Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIDNNEGRPEKN--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW D + + +T+ + A I TI+ Sbjct: 307 LW------TDKIEGAKIQHFTAQSEHEE--------AAFIGDTIAKKHD---------IH 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D+ +L R + ++ + D IKD++A R + Sbjct: 344 DVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482 + DDLS + ++ P + + K+ R + +++ + + K + Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYAREKGTSLFMTLTQLHLIDSIKGKTKEKLE 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I L+ + + D IL Q + + + E L+ Sbjct: 460 EFGILIFTLVSEMEDKTVLDILESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519 Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + S +++ + ++ V +MT+H AKGLE P+VFL +F Sbjct: 520 QDTNPSGTVEDFLEQVALVNDVDSFEQEEAK--VTLMTLHAAKGLEFPIVFLCGLEEGLF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H + EE RL YVG+TRA Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717 +L I + + +++ + + + ++ + K + T Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663 Query: 718 HPENTPLEREETIKQ 732 P P+ R E I Sbjct: 664 RPVTKPIVRNEVIAD 678 >gi|260437266|ref|ZP_05791082.1| ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus DSM 2876] gi|292810576|gb|EFF69781.1| ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus DSM 2876] Length = 748 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 114/640 (17%), Positives = 197/640 (30%), Gaps = 115/640 (17%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y+E KKN +DF+D+I T L + + + +I++DE QDT+ Sbjct: 169 TAEIYREYQEQLKKNNAVDFDDIIGLTVKLFNED---KEVLRYYQERFRYIMVDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +IR L L VGD+ QSIY F GA+ +L ++ Sbjct: 226 RAQFNLIRLLAG----------GHGNLCVVGDDDQSIYKFRGADINNILDFEKYF----- 270 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 II+L ++RST IL V ++V + Sbjct: 271 ---NDAKIIKLEQNYRSTQKILDVANEVIKNNSGRKDKR--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW V N + + AR IA I++ D Sbjct: 307 LWTSVKDGTKVIFNVYENGY--------------EEARGIAEDIAHRHLHDRK------- 345 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 D +L R + + + I IKD++A + I Sbjct: 346 --DYSDFAILYRTNAQSRSLEEKL----IEKNIPYRIYGGINFYARREIKDILAYLKTID 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQH 483 + DDL+ +L P + K+ +E + + + A SK + Sbjct: 400 NARDDLAVKRILNVPKRGIGAASVAKVDDYAYENDITFYVALRQAKEVPGLQRAVSKVEG 459 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTLR 538 + I L +Q+ I+ E +DE ++ ++ Sbjct: 460 FVTQIEILKSKSQYIGVGKLIEEIIETVGYSDYIDAESESDEQATERRQNIDELISKAVQ 519 Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E+ SL + E+ N++ V +MT+H+AKGLE P+V+L + Sbjct: 520 YEETVDEPSLSGFLEEVALVADIDN--LDENNDMVSLMTIHSAKGLEFPIVYLAGMEDGL 577 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F I +S EE RL YVG+TR Sbjct: 578 FPSYMS--------------------------------ISTGDESDIEEERRLCYVGITR 605 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A + LI+ + ++ V + L + + Sbjct: 606 AKETLIMSAARMRTVRGETQMNRTSRFVREIPKELLAESAQMLKKNSEYSSITGKDHMEL 665 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 + ++ + K + + + Sbjct: 666 PVRKRGQVAFNSYQREAISNTVFDKKTDSAPDYVVGDRVR 705 >gi|184154513|ref|YP_001842853.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956] gi|251764528|sp|B2GEY4|ADDA_LACF3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|183225857|dbj|BAG26373.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956] Length = 1337 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 154/1143 (13%), Positives = 320/1143 (27%), Gaps = 227/1143 (19%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 G +S + L PL Q+ ++ + E G ++ + T + Sbjct: 202 EEGADPRQSAF-FKRLLEPLVGPQLKELRDQWAALGEVGPARFAEQVEEDLAKLATTVDD 260 Query: 64 E-----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTY 117 + + L+ + F P+ + + + D + +D+ + D + Sbjct: 261 QGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPELLDELGVQRGGLRDQLGDLHDTYFFQ 320 Query: 118 KMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +A HY+ K+ +LDF DL +L +++ Sbjct: 321 SAADLVKYGQKAGALIEILTRVATDFRCHYQIIKQDRRLLDFSDLEHYAYAILTGENINP 380 Query: 168 -----------------WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 ++ ++ + I+IDE QDT+ + +D + Sbjct: 381 KVTWSDEEARAKRQAAAQVQAELQRHYKEIMIDEYQDTNRL---------QDDLLRLLHK 431 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 S F VGD KQSIY F A+P GQ ++L ++RS ++ Sbjct: 432 SGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSAD----GQSSEALDLSDNYRSRHEV 487 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCNPQQESW 329 +V+ +F + Q + Q + + Sbjct: 488 TDLVNLIFEQLMDQQLGEMVYDDKASLKPKADWGADRDQASPATPELLLFDGGVKKTTAN 547 Query: 330 TSYFDSLPQESSASILA---RRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384 + D++ +A I I ++ +TI + R I DI +L R ++ Sbjct: 548 PTGEDAIVVRQPEDKVASEVWLIGQRIRELLAKETILDPETKRVRPITPGDIAILSRAKR 607 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 I + + V+ + I+ +M+L + I + D+ +L+SP Sbjct: 608 ----IHSVIAEQFAKLNLPVMVHGVENYFKATEIRVVMSLLKVIDNPYQDVPLAAVLRSP 663 Query: 445 L-------------------FNFSEDDIFKI--------------CTQRHETETVYEYIQ 471 L F+E ++ + + E ++ Sbjct: 664 LIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVVQQNYYAWRDQEVEAVE 723 Query: 472 KFANCGISKFQH----------------------------VIKYIHELIHIAQFCSPHDF 503 + + L +AQ D Sbjct: 724 NHDALTEEELAERVAGDPAGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPLVDL 783 Query: 504 FTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562 I A G + L E++ + L + I +EQ Sbjct: 784 IWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQKKND 843 Query: 563 RAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND--DP 616 A + + +MT+H +KGL+ P+VFLV+T Q + + + L Sbjct: 844 DLGEATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVD 903 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---- 672 + K + L + K+ + E RLLYV +TRA +L I + ++ Sbjct: 904 STANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADLTKK 963 Query: 673 -----------------EKKSNQRTWYDMVYDSFHNDERVKKIKL--------------- 700 + ++ D + + ++ Sbjct: 964 MDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAATPLRGLTKA 1023 Query: 701 --------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + + + T +Q + + P + Sbjct: 1024 AYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQVATQ 1083 Query: 753 EPYILNPSTIDTKGKTNLESLLS------------------------------------- 775 ST+ + L Sbjct: 1084 TTAFQAVSTVREAFARQDPTNLEMGRLEIDRDQIKEAGAYLAPEERAFENPAFITGASDQ 1143 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNL-LLSITRLL 832 + G H + Q + + T++ + + + + + Sbjct: 1144 EPTGTAIGTATHLVFQKLPLTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVAGVVSFY 1203 Query: 833 ENPMMTTAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFI 880 + + + + EV S ++ +++I G ID I + Sbjct: 1204 QTGLGQVITAHPEQVHREVPFSMLLSAHDLFSGIGATDDSEVLIHGIIDGYVQHDDQIDL 1263 Query: 881 FEYKTHH----HVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFI 934 F+YKT H ++++ + + QL +Y L P + + L + +V Sbjct: 1264 FDYKTDRISQAHPEEDLQELADKYSGQLVLYADALTKMTGVPLEKIHRHLYFTRAKRVVT 1323 Query: 935 IPQ 937 + Sbjct: 1324 LSA 1326 >gi|220931077|ref|YP_002507985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168] gi|219992387|gb|ACL68990.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168] Length = 715 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 117/734 (15%), Positives = 235/734 (32%), Gaps = 136/734 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + V+ + + ++ L Sbjct: 32 GAGSGKTRVLTHRIAYLIENYGVNPLQILAVTFTNKAAGEMKERVDNLLGGMAGDLWVST 91 Query: 66 FSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L + L ++ N + + + + + LK+ + K R R ++ ++ Sbjct: 92 FHSLCARILRKEIGKIGYDNNFVIFDTDDQQKLISRILKELNLDPKKTRPRAILSEISRA 151 Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + + + Y+E K++ LDF+DLI+ T ++ + Sbjct: 152 KNELIDPRSYANNVGDYFQDITARIYPLYQERLKESNALDFDDLIMKTIEVFVDNPM--- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QD + Q+++++ L + R L VGD Q IY Sbjct: 209 VLEYYQERFKYILVDEYQDVNFAQYKLVQLLA----------NKYRNLCVVGDPDQGIYG 258 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F GA+ + +L + + +I+L ++RS IL V + Sbjct: 259 FRGADIRNILNFEEDYPE--------ARVIKLEQNYRSKEKILKAAHHVIRNNTARKEKR 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + FD + A Sbjct: 311 ---------------------LW-------TKRGKGEDLKLYVAFDDKDE-------ASY 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + D VL R + + + Y I Sbjct: 336 VCRKIKELKRE---------KNYKFSDFAVLYRTNSQSRSVEEMM----VKYAIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 F D + IKD++A R I + D++S + ++ P + I K+ R ++Y Sbjct: 383 GFRFYDRMEIKDILAYLRVIYNPSDEVSLLRIINRPKRGIGQGTISKLSRYARERGISLY 442 Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + + + + EL ++ S ++ +++ Sbjct: 443 KAGTEAESNPYLTASFKKRVKAFFDLLEELREKSETLSIDTLTHQVVTRTGYQRELNEEG 502 Query: 522 GNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 + + + E + + N +L + E+ N N V +MT+ Sbjct: 503 TQQARNRLENIQELFSVIEEFMKGNENKTLGAFLEEVSLISDVDNMED--NQNVVTLMTL 560 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVF++ +F H + H Sbjct: 561 HSAKGLEFPVVFIIGMEEGLFPHANSMMDHEELEEERRL--------------------- 599 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDER 694 YVG+TRA D+L + + K + D + D Sbjct: 600 -------------CYVGITRARDELYLTRARERMRFGQRKPYPPSRFLDEIPPQLFEDNN 646 Query: 695 VKKIKLTNSINKDE 708 KK ++ +I + E Sbjct: 647 DKKEEILGNIKEKE 660 >gi|260662573|ref|ZP_05863468.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN] gi|260553264|gb|EEX26207.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN] Length = 1337 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 156/1144 (13%), Positives = 321/1144 (28%), Gaps = 229/1144 (20%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 G +S + L PL Q+ ++ + E G ++ + T + Sbjct: 202 EEGADPRQSAF-FKRLLEPLVGPQLKELRDQWAALGEVGPARFAEQVEEDLAKLATTVDD 260 Query: 64 E-----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTY 117 + + L+ + F P+ + + + D + +D+ + D + Sbjct: 261 QGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPELLDELGVQRGGLRDQLGDLHDTYFFQ 320 Query: 118 KMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +A HY+ K+ +LDF DL +L +++ Sbjct: 321 SAADLVKYGQKAGALIEILTRMATDFRCHYQIIKQDRRLLDFSDLEHYAYAILTGENINP 380 Query: 168 -----------------WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 ++ ++ + I+IDE QDT+ + +D + Sbjct: 381 KVTWSDEEARAKRQAAAQVQAELQRHYKEIMIDEYQDTNRL---------QDDLLRLLHK 431 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 S F VGD KQSIY F A+P GQ ++L ++RS ++ Sbjct: 432 SGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSAD----GQSSEALDLSDNYRSRHEV 487 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCNPQQESW 329 +V+ +F + Q + Q + + Sbjct: 488 TDLVNLIFEQLMDQQLGEMVYDDKASLKPKADWGADRDQASPATPELLLFDGGVKKTTAN 547 Query: 330 TSYFDSLPQESSASILA---RRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384 + D++ +A I I ++ +TI + R I DI +L R ++ Sbjct: 548 PTGEDAIVVRQPEDKVASEVWLIGQRIRELLAKETILDPETKRVRPITPGDIAILSRAKR 607 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 I + + V+ + I+ +M+L + I + D+ +L+SP Sbjct: 608 ----IHSVIAEQFAKLNLPVMVHGVENYFKATEIRVVMSLLKVIDNPYQDVPLAAVLRSP 663 Query: 445 L-------------------FNFSEDDIFKI--------------CTQRHETETVYEYIQ 471 L F+E ++ + + E ++ Sbjct: 664 LIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVVQQNYYAWRDQEVEAVE 723 Query: 472 KFANCGISKFQH----------------------------VIKYIHELIHIAQFCSPHDF 503 + + L +AQ D Sbjct: 724 NHDTLTEEELAERVAGDPFGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPLVDL 783 Query: 504 FTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562 I A G + L E++ + L + I +EQ Sbjct: 784 IWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQKKND 843 Query: 563 RAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND--DP 616 A + + +MT+H +KGL+ P+VFLV+T Q + + + L Sbjct: 844 DLGEATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVD 903 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---- 672 + K + L + K+ + E RLLYV +TRA +L I + ++ Sbjct: 904 STANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADLTKK 963 Query: 673 -----------------EKKSNQRTWYDMVYDSFHNDERVKKIKL--------------- 700 + ++ D + + ++ Sbjct: 964 MDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAATPLRGLTKA 1023 Query: 701 --------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + + + T +Q + + P + Sbjct: 1024 AYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQVATQ 1083 Query: 753 EPYILNPSTIDTKGKTNLESLLS------------------------------------- 775 ST+ + L Sbjct: 1084 TTAFQAVSTVREAFARQDPTNLEMGRLEIDRDQIKEAGAYLAPEERAFENPAFITGASDQ 1143 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLL--SITRL 831 + G H + Q + L E + + + + L + + + Sbjct: 1144 EPTGTAIGTATHLVFQKLP-LTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVVGVVSF 1202 Query: 832 LENPMMTTAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIF 879 + + + + EV S ++ +++I G ID I Sbjct: 1203 YQTGLGQVITAHPEQVHREVPFSMLLSAHDLFSGIGATDDSEVLIHGIIDGYVQHDDQID 1262 Query: 880 IFEYKTHH----HVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVF 933 +F+YKT H ++++ + + QL +Y L P + + L + +V Sbjct: 1263 LFDYKTDRISQAHPEEDLQELADKYSGQLVLYADALTKMTGVPLEKIHRHLYFTRAKRVV 1322 Query: 934 IIPQ 937 + Sbjct: 1323 TLSA 1326 >gi|90962576|ref|YP_536492.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118] gi|122448460|sp|Q1WRS0|ADDA_LACS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|90821770|gb|ABE00409.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118] Length = 1248 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 122/625 (19%), Positives = 215/625 (34%), Gaps = 38/625 (6%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L QK I + + S + E L + + T K + + K Sbjct: 294 LDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVETLSEVVKEF 353 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 A + + K++ VLDF DL T +L ++ ++ + I++DE QDT+ +Q Sbjct: 354 GAEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQ 413 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ ++ H +P +F VGD KQSIY F A+P L++ + Sbjct: 414 ETILTTIA---------HKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATD----D 460 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L +FRS ++ + +FS + + R + Sbjct: 461 NDDERIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKA 520 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKR 369 +V+ + + + D ++ A A I ++ + G R Sbjct: 521 EVLVYESEDSSQESDDEPVNEDF-SIDNKAQGQIVMTAKRIKELVENGEKIYDKKQGTIR 579 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I+ +DI +L RK+ + + + D +K +M+ + I Sbjct: 580 PIEYRDIAILAPTRKN----NLILTEEFKRLGVPIFVPDAQNYFQTTELKIMMSFLQIID 635 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGI 478 + D+ V +L+SP+ E+++ + + E FA Sbjct: 636 NPYQDIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLY 695 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTL 537 K +K + E ++AQ I G + L Sbjct: 696 EKIAIFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAA 755 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593 E+ S+ L + + + + K A + + V +MT+H +KGLE PVVFL+D Sbjct: 756 EYEEMSFKGLFQFVRFINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPVVFLLDA 815 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + K + + K+ + K K E RLLYV Sbjct: 816 THKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGKQALKKLAAEQMRLLYV 875 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678 +TRA QL I NE S Sbjct: 876 ALTRAEQQLFIVGSYKDKNEALSKW 900 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 21/302 (6%) Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN---SINKDE 708 Y+G ++ + + E + + E + +++ + I Sbjct: 950 YIGELPVKFEVKFYSNQDLRGENITLDENSESWLKQQLKKIEEQEPLEINDKQYRIIDKI 1009 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 + + + T + +K+ D+ I P +N + Sbjct: 1010 LQSKYPNESLAKTTAYQAVSDLKRAFDDPDNNMMQSLEIDWQDQVPQGINRYVQNELSLP 1069 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-- 826 + G+ H LLQ + E + + E + Sbjct: 1070 KFMTTKVKVSPAQVGIATHLLLQKLPLDDEVTLEELMQLLAQLVEDKLITSEVAKEINLN 1129 Query: 827 SITRLLENPMMTTAMS--CDSYSEVSVSGKINCP----------KKDIIISGRIDQISIS 874 I + + + E+ + I ++ I++ G ID + Sbjct: 1130 QIKVFYTSDLGRKVLKNKDKVKRELPFAMIIPAGRLFSNVDNDVEQPILVHGIIDGLIEL 1189 Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVF 933 + IF+YKT HH + + + QL++Y ++ NK + +IY + K Sbjct: 1190 DDEVIIFDYKTDHHT--SEDKLIENYRGQLNLYAMAVESML-NKKVSQKIIYSLDLGKSI 1246 Query: 934 II 935 ++ Sbjct: 1247 VL 1248 >gi|23098214|ref|NP_691680.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] gi|22776439|dbj|BAC12715.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 741 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 112/628 (17%), Positives = 203/628 (32%), Gaps = 120/628 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +KN LDF+DLI+ T L ++ + + +I +DE QD Sbjct: 171 RQVAQVYEGYQKMLRKNQSLDFDDLIMQTIHLFQR---IPEVLEYYQRRFQYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +++ L F + L VGD QSIY + GA+ +L ++ Sbjct: 228 TNHAQYYLVKQLASRF----------QNLCVVGDSDQSIYRWRGADIGNILTFEKDYP-- 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST IL ++V S + + + + Sbjct: 276 ------SARTVLLEQNYRSTKSILQAANQVISNNSGRKPKNLWTDNIDGKNLNYYQGG-- 327 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + A + I +I + Sbjct: 328 ---------------------------------TEQEEALFVTDKIQQLIRENE------ 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D+ +L R + I I+ D IKD++A R Sbjct: 349 ---YKPSDVAILYRTNAQSRAIEDTL----LKSGINYQMVGGMKFYDRKEIKDMIAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISK-----F 481 I + +DD+SFV ++ P + + ++ ++YE +++ G+SK Sbjct: 402 ITNPDDDISFVRVVNEPKRGVGKTSVERLQAYAGEHDISLYEAVKEVDFTGVSKKAANAL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 I L +F + D IL + + E + L+EF+ T Sbjct: 462 AGFESLIRTLSQQQEFLTATDMVEAILERTGYEEMLKNERTIEAQSRLENLEEFMTVTKD 521 Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGS 595 E+ + +L +++L + ++ +MT+H AKGLE PVVFL+ Sbjct: 522 FEKASEDKTLIAFLTDLALVADIDRVDEEDPDHNEKITLMTLHAAKGLEFPVVFLIGMEE 581 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 VF H L YVG+ Sbjct: 582 NVFPHSRSIMDEDEMEEERR----------------------------------LAYVGI 607 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA +L + + ++N + N+ + I I+K + A Sbjct: 608 TRAEKELYVTHAKMRTLYGRTNMNPISRFI-----NEIPKELIDGLEEISKPMFGAKSLE 662 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKL 743 P +R Q + + Sbjct: 663 RSPQRPAPKKRRAEKMQSSTGAESKEWA 690 >gi|300215188|gb|ADJ79604.1| ATP-dependent helicase/nuclease subunit A (ATP-dependent helicase/nuclease addA) [Lactobacillus salivarius CECT 5713] Length = 1248 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 121/626 (19%), Positives = 217/626 (34%), Gaps = 38/626 (6%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L QK I + + S + E L + + T K + + K Sbjct: 294 LDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVETLSEVVKEF 353 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + + + K++ VLDF DL T +L ++ ++ + I++DE QDT+ +Q Sbjct: 354 GSEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQ 413 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ ++ H +P +F VGD KQSIY F A+P L++ + N Sbjct: 414 ETILTTIA---------HKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATDDNND- 463 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L +FRS ++ + +FS + + R + Sbjct: 464 ---ERIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKA 520 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---R 369 +V+ + + + D ++ A A I ++ + K+ R Sbjct: 521 EVLVYESEDSSQESDDEPVNEDF-SIDNKAQGQIVMTAKRIKELVENGEKIYDKKQGAIR 579 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I+ +DI +L RK+ + + + D +K +M+ + I Sbjct: 580 PIEYRDIAILAPTRKN----NLILTEEFKRLGVPIFVPDAQNYFQTTELKIMMSFLQIID 635 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGI 478 + D+ V +L+SP+ E+++ + + E FA Sbjct: 636 NPYQDIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLY 695 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTL 537 K +K + E ++AQ I G + L Sbjct: 696 EKIAIFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAA 755 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593 E+ S+ L + + + + K A + + V +MT+H +KGLE PVVFL+D Sbjct: 756 EYEEMSFKGLFQFVRFINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPVVFLLDA 815 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + K + + K+ + + K E RLLYV Sbjct: 816 THKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGEQALKKLAAEQMRLLYV 875 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQR 679 +TRA QL I NE S Sbjct: 876 ALTRAEQQLFIVGSYKDKNEALSKWE 901 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 92/308 (29%), Gaps = 21/308 (6%) Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN--- 702 + YVG + + + E + + E + +++ + Sbjct: 944 DTREPAYVGELPVKFAVKFYSNQDLREENITLDENGESWLKQQLKKIEGQEPLEINDKQY 1003 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 I + + + T + +K+ D+ I P +N Sbjct: 1004 RIIDKILQSKYPNESLTKTTAYQAVSDLKRAFDDPDNNMMQSLEIDWQDQAPQGINRYVQ 1063 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKE 820 + G H LLQ + E + + ++ + Sbjct: 1064 GELKLPKFMTTKVKVSPAQVGTATHLLLQKLPLDDEVTLEELMQLLSQLVEDKLITSEVA 1123 Query: 821 YKNLLLSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP----------KKDIIISGRI 868 + L I + + T + E+ + I ++ I++ G I Sbjct: 1124 KEINLDQIKNFYASDLGKTVLENKDKVKRELPFAMIIPAGRLFSNVDNDVEQPILVHGII 1183 Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-V 927 D + + F+YKT HH + + + QL++Y ++ NK + +IY + Sbjct: 1184 DGLIELDDEVITFDYKTDHHT--SEDKLIENYRGQLNLYAMAVESML-NKKVSQKIIYSL 1240 Query: 928 SEPKVFII 935 K ++ Sbjct: 1241 DLGKSIVL 1248 >gi|313896178|ref|ZP_07829731.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974977|gb|EFR40439.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137 str. F0430] Length = 747 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 122/777 (15%), Positives = 228/777 (29%), Gaps = 141/777 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L Y+ L + V + + TL + Sbjct: 27 GAGSGKTRVLTYRIANLLAH-DVPPYRILAITFTNKAAREMRDRVDTLIGEAAHDVWLST 85 Query: 66 FSLLSSFFLTQKFTP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIK 109 F + FL + +KN + + ++E LK+ Q Sbjct: 86 FHSFCARFLRIEIEHLKGYEKNFVIYDAADSKGLIRECLKELNIDEKHTAPGAVQSHISD 145 Query: 110 IRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ T F + + Y+ + N LDF+DL++ T +L + + Sbjct: 146 AKNNLLTAAQFAAGAGDFFAEQVAKVYELYQSKLRANNALDFDDLLMLTVAVLSQNEE-- 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 +R K ++ +IL+DE QDT+ Q+ + + L R + VGD QSIY Sbjct: 204 -VRRKYQEKFRYILVDEYQDTNGAQYNITKLLAG----------GHRNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L +R + ++I L ++RST +IL + V + + Sbjct: 253 GWRGADMRNILNFERDYP--------EATVILLEQNYRSTKNILEAANAVIENNLDRKKK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + ++ A Sbjct: 305 A---------------------LW-------TDNVQGDPIVVY-------EGATEKNEAS 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I + + ++ DI VL R + I + Sbjct: 330 YIVREVERLH---------TMFNVKYGDIAVLYRTNAQSRNIEEAFYA----SGVPYSMV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 D IKD++A R I + D LS + ++ P + + ++ ++ Sbjct: 377 GAVRFYDRREIKDIIAYLRVIYNPRDTLSLLRIINVPRRGLGQTTLARMAELAAEHRISL 436 Query: 467 YE---------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 +E I K + + + + H+ I+ + Sbjct: 437 FEIITDSQMLAMIPKLSGKVKFALEDFAALVFTFMGQLGTRPLHEIVEDIIEESGYAKAL 496 Query: 518 ISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573 + ++ L EF++ E + L L Q + + V Sbjct: 497 EEDKKEDNRDRLENLREFISVAKNFEDGAAEGENGLEDFLAQISLISDVDQAEQSDGSVT 556 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT H AKGLE P VF+ +F H Sbjct: 557 LMTFHAAKGLEFPTVFMAGMEEGLFPHSRTL----------------------------- 587 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 L EE R YVG+TRA +L + + ++ + + + Sbjct: 588 -----LDDDEIEEERRTCYVGITRAERRLYLTHARQRTIYGRTEMSRPSRFLAEIPEHLV 642 Query: 694 RVKKIKLTNSIN-----KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 K+ + D W P P + + K + Sbjct: 643 EHKQADFAAEGDMRGGRTDVWGRGANGVRRPYMPPPPQHTAEDGSVIRPDAAAKFTA 699 >gi|227891362|ref|ZP_04009167.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus salivarius ATCC 11741] gi|227866940|gb|EEJ74361.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus salivarius ATCC 11741] Length = 1253 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 121/626 (19%), Positives = 215/626 (34%), Gaps = 38/626 (6%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L QK I + + S + E L + + T K + + K Sbjct: 299 LDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVETLSEVVKEF 358 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 A + + K++ VLDF DL T +L ++ ++ + I++DE QDT+ +Q Sbjct: 359 GAEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQ 418 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ ++ H +P +F VGD KQSIY F A+P L++ + Sbjct: 419 ETILTTIA---------HKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATD----D 465 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L +FRS ++ + +FS + + R + Sbjct: 466 NDDERIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKA 525 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKR 369 +V+ + + + D ++ A A I ++ + G R Sbjct: 526 EVLVYESEDSSQESDDEPVNEDF-SIDNKAQGQIVMTAKRIKELVENGEKIYDKKQGTIR 584 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I+ +DI +L RK+ + + + D +K +M+ + I Sbjct: 585 PIEYRDIAILAPTRKN----NLILTEEFKRLGVPIFVPDAQNYFQTTELKIMMSFLQIID 640 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGI 478 + D+ V +L+SP+ E+++ + + E FA Sbjct: 641 NPYQDIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLY 700 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTL 537 K +K + E ++AQ I G + L Sbjct: 701 EKITIFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAA 760 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593 E+ S+ L + + + + K A + + V +MT+H +KGLE PVVFL+D Sbjct: 761 EYEEMSFKGLFQFVRFINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPVVFLLDA 820 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + K + + K+ + + K E RLLYV Sbjct: 821 THKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGEQALKKLAAEQMRLLYV 880 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQR 679 +TRA QL I NE S Sbjct: 881 ALTRAEQQLFIVGSYKDKNEALSKWE 906 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 83/276 (30%), Gaps = 18/276 (6%) Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 N +W E ++ I + + + T + +K+ Sbjct: 981 DENGESWLKQQLKKIGGQEPLEINDKQYRIIDKILQSKYPNESLTKTTAYQAVSDLKRAF 1040 Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794 D+ I P +N + G H LLQ + Sbjct: 1041 DDPDNNMMQSLEIDWQDQAPQGINRYVQGELKLPKFMTTKVKVSPAQVGTATHLLLQKLP 1100 Query: 795 TLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVS 850 E + + ++ + P + L I + + + E+ Sbjct: 1101 LDDEVTLEELMQLLSQLVEDKLITPEVAKEINLDQIKNFYASDLGRKVLENKDKVKRELP 1160 Query: 851 VSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900 + I ++ I++ G ID + + IF+YKT HH + + + Sbjct: 1161 FAMIIPAGRLFSNVDNDVEQPILVHGIIDGLIELDDEVIIFDYKTDHHT--SEDKLIENY 1218 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFII 935 QL++Y ++ NK + +IY + K ++ Sbjct: 1219 RGQLNLYAMAVESML-NKKVSQKIIYSLDLGKSIVL 1253 >gi|292670877|ref|ZP_06604303.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541] gi|292647498|gb|EFF65470.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541] Length = 747 Score = 310 bits (793), Expect = 1e-81, Method: Composition-based stats. Identities = 124/750 (16%), Positives = 220/750 (29%), Gaps = 135/750 (18%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK- 77 + L V + + TL S F + FL + Sbjct: 39 RIANLLEHAVPPYRILAITFTNKAAREMRDRVDTLIGDSARDVWLSTFHSFCARFLRMEI 98 Query: 78 ---FTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKIRDRFNTYK--MF 120 T KN + + + ++E LK+ Q ++R K Sbjct: 99 EHLGTYAKNFVIYDASDTKGLIRECLKELNIDEKHTAPGAVQSHISDAKNRLLDVKTFAA 158 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 ++T + Y N LDF+DL++ T +LL + IR K ++ +I Sbjct: 159 QATDFFAEQVAKIYELYHSKLLANNALDFDDLLMLTVELLSNNEE---IREKYQKKFQYI 215 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ Q+ + + L E R + VGD QSIY + GA+ + +L Sbjct: 216 LVDEYQDTNGAQYAITKLLAE----------GHRNICVVGDADQSIYGWRGADMRNILNF 265 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 +R + ++I L ++RST +IL + V + Sbjct: 266 ERDYP--------EATVILLEQNYRSTKNILAAANAVIDNNLTRKKK------------- 304 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW D+ + + S+ A I + + Sbjct: 305 --------DLW------TDNPTGDPLIVY--------EASTEKNEAAFIVREVERLH--- 339 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + DI VL R + I I D I+D Sbjct: 340 ------TMFNAKYGDIAVLYRTNAQSRNIEEAFYAT----GIPYAMVGAVRFYDRREIRD 389 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETVYEYI 470 ++A R I + D LS + ++ P + + ++ + E + I Sbjct: 390 IIAYLRVIYNPRDTLSLLRIINVPKRGLGQTTLGRMMEKAAEYRISLFELITDAQLIGTI 449 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVID 527 K + + ++ I + H+ I+ ++ ++ Sbjct: 450 PKLSAKVKFELENFAALIFTYMGQLGTHPLHEIVEDIIEESGYAAALEDDTKEDNHDRLE 509 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESP 586 L EF++ E + L L Q + + V +MT H AKGLE P Sbjct: 510 NLREFISVAKNFEDGAEEGENGLEDFLAQISLISDVDETEQSDGNVTLMTFHAAKGLEFP 569 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+ +F H L + EE Sbjct: 570 TVFMAGMEEGLFPHSRTL----------------------------------LDDTEIEE 595 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 R YVG+TRA +L + + ++ + + K Sbjct: 596 ERRTCYVGITRAECRLYLTYARQRTIYGRTEMSRPSRFLTEIPEELLEHKTADFFAESTS 655 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + W + ++ Sbjct: 656 GRGRSDVWGRGSSGGRRSYLPPPPQHTAED 685 >gi|304436816|ref|ZP_07396782.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370188|gb|EFM23847.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 746 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 120/796 (15%), Positives = 233/796 (29%), Gaps = 144/796 (18%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78 + L V + ++ L + F + FL + Sbjct: 39 RIANLLEHGVPPYRILAITFTNKAAREMRERVDALIGDAAQDVWLSTFHSFCARFLRMEL 98 Query: 79 TP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIKIRDRFN--TYKMF 120 KN + + L+E LK+ Q ++R Sbjct: 99 EHYGRYAKNFVIYDAADSKGLLRECLKELNIDEKHTAPGAVQAHISDAKNRLLDVAAFTA 158 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 ++T + A Y+ ++N LDF+DL++ T +LL K + +R K ++ +I Sbjct: 159 QATDFFAEQVAKIYALYQSKLQENNALDFDDLLMLTVELLTKNE---ELRTKYQKKFQYI 215 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ Q+ + + L + R + VGD QSIY + GA+ + ++ Sbjct: 216 LVDEYQDTNGAQYAITKLL----------DAEHRNICVVGDADQSIYGWRGADMRNIMNF 265 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + ++I L ++RST +IL + V + Sbjct: 266 EKDYP--------EATVILLEQNYRSTKNILAAANAVIENNLTRKKK------------- 304 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 +LW + ++ + ++ A I + + Sbjct: 305 --------ELWTDNPTGDRI--------------TIYEGATEKNEASYIVREVERLH--- 339 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 ++ DI VL R + I + D IKD Sbjct: 340 ------TMFHVKYGDIAVLYRTNAQSRNIEEAFYAT----GVPYAMVGSVRFYDRREIKD 389 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETVYEYI 470 ++A R I + D LS + ++ P I ++ E + I Sbjct: 390 IIAYLRVIYNPRDTLSLLRIINVPRRGLGPTSIARMMETAEEYRISLFEVITDAQLLSMI 449 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVID 527 K + + + + H+ ++ + ++ Sbjct: 450 PKLSTKVKLALEEFAAMVFTFMGQLGTRPIHEIVEDVIETSGYAAALEEEKKEDNRDRLE 509 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESP 586 L EF++ + + L L Q + + V +MT H AKGLE P Sbjct: 510 NLREFISVAKNFDDGAAEGENGLADFLAQIALISDVDQTEQSDGTVTLMTFHAAKGLEFP 569 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+ +F H L + EE Sbjct: 570 AVFMAGMEEGLFPHSRTL----------------------------------LDDTEIEE 595 Query: 647 YNRLLYVGMTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 R YVG+TRA +L + + S + ++V + + Sbjct: 596 ERRTCYVGITRAERRLYLTYARQRTIYGRTEMSRPSRFLAEIPEELVEHKEADFLGGTDL 655 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK-KLFSPIKNDINEPYIL 757 + ++I + E + + ++ + K + Sbjct: 656 RAPSNIWSERSTRTERKRYMTPPQHTAEDGSVIRPDASAAFKAGDAVRHSKWGDGRIVAI 715 Query: 758 NPSTIDTKGKTNLESL 773 + S D + Sbjct: 716 SGSGEDAELSIAFPGE 731 >gi|309775325|ref|ZP_07670333.1| putative ATP-dependent nuclease, subunit A [Erysipelotrichaceae bacterium 3_1_53] gi|308916907|gb|EFP62639.1| putative ATP-dependent nuclease, subunit A [Erysipelotrichaceae bacterium 3_1_53] Length = 815 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 148/892 (16%), Positives = 304/892 (34%), Gaps = 93/892 (10%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98 ME + LQQ +++ + K + K L++ Sbjct: 1 MEQKLLAVKDLEDALQQKDYQAYRTAFLAIVHAVVPPSPDKEDKEY--ARLRKGLLGLED 58 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 + + + + + + Y K+++ V+DF+D+ + Sbjct: 59 AQLDILFSEDEFMRDIRYL--YPYVKKLVEMCQDYRSVYARTKEEHKVIDFDDMEHFALE 116 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 +L+ + + I++DE QD++ +Q +++ + +F Sbjct: 117 ILQ--AKGGQVADLYRDKFVEIMVDEFQDSNDVQNQLVMLIC-----------RKNNVFR 163 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD KQSIY F A+P + G +I L ++RS I+ + +F Sbjct: 164 VGDIKQSIYGFRYAKPALMKGLIDH-------RGVYDEVIYLSNNYRSKKMIVDFNNDLF 216 Query: 279 SIPENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 N G S + G V + V ++ + Sbjct: 217 KQLMNIDGFSCSYAKEDDVETGVPAQLEGNVPICFHAVFHNEIKEAEGLIV--------- 267 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 S + A IA I + + + KD +VLVR + + L Sbjct: 268 --SKNELKASYIANQILEIKEREQR---------KWKDFVVLVRGNARKDDMKKIFDEL- 315 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 I + ++ A++ +++ + IL DD+SF L SPLF S D+ + Sbjct: 316 ---NIPYFIDIKYGFYQSNAVQVILSAMKCILHPHDDISFTATLLSPLFQKSTMDLAEAK 372 Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 Q+ + ++ Y + + G + Q + ++L + + K + Sbjct: 373 LQKEKGQSYYSWYCEHPFPGFEQLQDFVHQGNKLR-------ISELINQLYELKDYYR-- 423 Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS---ANHNEVRI 574 + LD ++ E + L +S++EQ + + VR+ Sbjct: 424 -LHTTIQEKTNLDLLFEKAVQFEDQYAAGLSSFLSQIEQIKDAQTAEAIPIGSEADVVRV 482 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS- 633 M++H +KGL+ PVVFL T Q K I S + +P+ R + Sbjct: 483 MSIHQSKGLQFPVVFLWSTDKQT--PIEFKDFCISDSELGLAMKAMDLPKRYVRTTVARI 540 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + K EE R+LYV TRA Q+ I + + + + + Sbjct: 541 AMEHKKDKEELEEEMRILYVATTRAQTQMHIVDCILDLDTYRHPLSMSGVYNRNGYTSWI 600 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + + + + + W + + + Sbjct: 601 LQTFLCNPSPLFTIKEVHRFWQSEVQSVEKAA----------------YHPFKVYEKPSG 644 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813 L ++ + + Q G ++HK+++ + T P R + IT A Sbjct: 645 TIELVTASAQETRELPAFTFDEATQGSIYGTMMHKMIERLAT-PPWNRDDIIT-----TA 698 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873 + + + ++ +L ++ A + + + E+ K + I+ G +D +S Sbjct: 699 ADLSMELKEWDIQTLLQLGKDSDYLQACTGNVHHEMPFMVK----DEAQILHGYMDFVSF 754 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 +++I I ++KT + + QL++Y+K ++ YP+ S+ + Sbjct: 755 QEESITIIDFKTDSLNDDQ--EFRKRYKGQLAMYKKAMQILYPDHSIQTYIY 804 >gi|308071013|ref|YP_003872618.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681] gi|305860292|gb|ADM72080.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681] Length = 774 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 114/718 (15%), Positives = 222/718 (30%), Gaps = 133/718 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + + + + L Sbjct: 33 GAGSGKTRVLTHRIAYLIATRKTAPWGILAITFTNKAAREMQDRVSKLIGPQGRDVWVST 92 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110 F + L + I I + L + K Q Sbjct: 93 FHSMCVRILRRDIERIGFISNFSILDSTDQLSVIRSCMKDLNIDTKKFEPKAVQSMMSTA 152 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T +M++ + + + Y++ K N LDF+DLI+ T L K+ Sbjct: 153 KNELVTPEMYERKIGDYFEGIVAKVYTKYQQRLKNNNSLDFDDLIMATIQLFKE---VPE 209 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ + + L + + VGD QSIY Sbjct: 210 VLDFYQKKFQYIHVDEYQDTNRAQYMLCKMLAD----------KHHRICVVGDSDQSIYR 259 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L + + I L ++RST++IL ++V + Sbjct: 260 WRGADISNILNFEEDYPE--------ARTILLEQNYRSTSNILNAANEVIGQNTGRKPKK 311 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW D + + + + + + Sbjct: 312 ---------------------LW------TDKEGGAKIKVYRADSEHDEGY--------F 336 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 IA I I +L R + ++ + I Sbjct: 337 IASEIHKNINAGK----------TYSHHAILYRTNAQSRVVEEIL----IKSDIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKDL+A R + + +DD+S + ++ P + + + K+ E Sbjct: 383 GIKFYDRKEIKDLLAYLRLLSNPDDDISLIRIINVPKRSIGDTTVGKLQAAAAERGVSIF 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + FA + I L + + S + +L + R + + Sbjct: 443 RVLQVVDDLGFAGRTRNALVEFYDMIEGLSRMVDYLSVTELTEKMLETTQYRLELQNENT 502 Query: 523 NE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKR--AHSANHNEVRIMT 576 E ++ +DEFL+ T+ E+ SL +++L + V +MT Sbjct: 503 LESRSRLENIDEFLSVTMEFEKGAEDKSLVSFLTDLALIADIDSMNDDEEEQSDAVVLMT 562 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VF+V VF H + Sbjct: 563 MHSAKGLEFPIVFIVGMEEGVFPHSRAFLDNEELEEERRL-------------------- 602 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 YVG+TRA +QL + + ++ + + + Sbjct: 603 --------------AYVGITRAEEQLFLTCAQMRTLFGRTTANPPSRFLEEIPDELKE 646 >gi|320529158|ref|ZP_08030250.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399] gi|320138788|gb|EFW30678.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399] Length = 747 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 120/805 (14%), Positives = 231/805 (28%), Gaps = 139/805 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L Y+ L + V + + TL + Sbjct: 27 GAGSGKTRVLTYRIANLLAH-DVPPYRILAITFTNKAAREMRDRVDTLIGEAAHDVWLST 85 Query: 66 FSLLSSFFLTQKFTP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIK 109 F + FL + +KN + + ++E LK+ Q Sbjct: 86 FHSFCARFLRIEIEHLKGYEKNFVIYDAADSKGLIRECLKELNIDEKHTAPGAVQSHISD 145 Query: 110 IRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ T F + + Y+ + N LDF+DL++ T +L + + Sbjct: 146 AKNNLLTAAQFAAGAGDFFAEQVAKVYELYQSKLRANNALDFDDLLMLTVAVLSQNEE-- 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 +R K ++ +IL+DE QDT+ Q+ + + L R + VGD QSIY Sbjct: 204 -VRRKYQEKFRYILVDEYQDTNGAQYNITKLLAG----------GHRNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L +R + ++I L ++RST +IL + V + + Sbjct: 253 GWRGADMRNILNFERDYP--------EATVILLEQNYRSTKNILEAANAVIENNLDRKKK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + ++ A Sbjct: 305 A---------------------LW-------TDNVQGDPIVVY-------EGATEKNEAS 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I + + ++ DI VL R + I + Sbjct: 330 YIVREVERLH---------TMFNVKYGDIAVLYRTNAQSRNIEEAFYA----SGVPYSMV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 D IKD++A R I + D LS + ++ P + + ++ ++ Sbjct: 377 GAVRFYDRREIKDIIAYLRVIYNPRDTLSLLRIINVPRRGLGQTTLARMAELAAEHRISL 436 Query: 467 YE---------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 +E I K + + + + H+ I+ + Sbjct: 437 FEIITDSRMLAMIPKLSGKVKFALEDFAALVFTFMGQLGTRPLHEIVEDIIEESGYAKAL 496 Query: 518 ISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573 + ++ L EF++ E + L L Q + + V Sbjct: 497 EEDKKEDNRDRLENLREFISVAKNFEDGAAEGENGLEDFLTQISLISDVDQAEQSDGSVT 556 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT H AKGLE P VF+ +F H Sbjct: 557 LMTFHAAKGLEFPTVFMAGMEEGLFPHSRTL----------------------------- 587 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 L EE R YVG+TRA +L + + ++ + + + Sbjct: 588 -----LDDDEIEEERRTCYVGITRAERRLYLTHARQRTIYGRTEMSRPSRFLAEIPEHLV 642 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 K+ + + + R + + Sbjct: 643 EHKQADF---AVEGDMRGGRTDVWGRGANGVRRPYMPPPPQHTAEDGSVIRPDAAAKFTA 699 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQ 778 + S ++ D + Sbjct: 700 GDAVRHSKWGDGRVVSIRGEGEDAE 724 >gi|313906496|ref|ZP_07839829.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] gi|313468662|gb|EFR64031.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] Length = 799 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 107/586 (18%), Positives = 189/586 (32%), Gaps = 115/586 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 Y++ +N LDF+DL++ T L ++ + + +I+IDE QDT+ Sbjct: 168 VAKCYYEYQKRLTQNNALDFDDLLVLTVKLFQQEPE---VLAYYQERFRYIMIDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q+ +R L S R L VGD+ QSIY F GA + +L ++ Sbjct: 225 TVQFHFVRLLA----------SRYRNLCVVGDDDQSIYKFRGANIRNILNFEKEFP---- 270 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I+L ++RST +IL ++V + + + Sbjct: 271 ----GAKVIKLEQNYRSTQNILNAANEVIANNKGRKQKK--------------------- 305 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW S + + + + + A +A I+ + Sbjct: 306 LW-------TSNKGGELVHFRQFLNGFEE-------AEYVAGDIAGKVRAGGR------- 344 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 Q D VL R + L L I IKD++A + + Sbjct: 345 --QYSDFAVLYRTNAMSRLFEEKFIAL----NIPYKIVGGVNFYARKEIKDMLAYLKTVD 398 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQH 483 + DDL+ ++ P I KI E + Y+ + + SK + Sbjct: 399 NGRDDLAVKRIINIPKRGIGNTSIGKIEQYALEENLSFYDALLEIDRVPGVSRAASKIRE 458 Query: 484 VIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I I S + +I+ Q+ +E I+ +DE ++ T Sbjct: 459 FTSMIGRYRGIIHSGEFSVRELLEMIIRDTGYVQELEEENTDEAKARIENIDELISKTED 518 Query: 539 N-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 +++ +L E + ++ + + V +MT+H AKGLE V++ Sbjct: 519 YMKESDEPNLSEFLQQVSLVADID--SVEEGSDYVLLMTLHGAKGLEFDNVYMAGMEENT 576 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F I EE RL YVG+TR Sbjct: 577 FPSYMS--------------------------------ISADDPEEIEEERRLCYVGITR 604 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 A L + + V + N +++ Sbjct: 605 ARKDLTLTAAEMRMVRGEPQFHRASRFVREIPRNLVELERETTDTR 650 >gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans Z-2901] gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans Z-2901] Length = 718 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 121/656 (18%), Positives = 202/656 (30%), Gaps = 126/656 (19%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K + I K+KL + D F + Y+E Sbjct: 133 KRFAPKAIAYHISSAKDKLISPRQYRDDADDLFKEK------------VAIIYNMYQEKL 180 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 KN LDF+DL+ L + + + +IL+DE QDTS Q+ ++ L + Sbjct: 181 NKNNALDFDDLLYYAVRLFENYP---RVLEYYQRRFKYILVDEYQDTSHAQYRLVNLLAQ 237 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 R L VGD QSIYS+ GA+ +L +R + ++ L Sbjct: 238 ----------KHRNLCVVGDPDQSIYSWRGADITNILNFERDYPE--------AKVVILK 279 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RST IL + V + + ST H Sbjct: 280 ENYRSTQKILDAANAVIAKNRMRKEKELFSTKESGH------------------------ 315 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + D + A +A TI +++ + DI +L R Sbjct: 316 ----PVYFYPAVDEKDE-------AAFVALTIESLVKSGE---------YNFNDIALLYR 355 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + I V D IKD++A R + + D ++ ++ Sbjct: 356 THALSRNFEEAF----MQRGIPYVIFGSRRFYDRKEIKDIIAYLRIVANPYDKVALKRII 411 Query: 442 KSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHI 494 P E K+ ET E + + + + + + Sbjct: 412 NEPKRGIGEASFAKVEAYADETGLPIGLLLLRDEALALVSGKTRKALKEFGEMLLWFREL 471 Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQEL 550 S IL + E + L+EFL T E+ + SL+ Sbjct: 472 KDRVSVTKLTEEILERSGYLPALKAEDTMEARARIENLNEFLTVTQAFERESEDKSLEAF 531 Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + + N VR+MT+H AKGLE PVVFLV +F H Sbjct: 532 LGTISLLTDADT--EEGGENRVRMMTLHAAKGLEFPVVFLVGLEEGIFPHSR-------- 581 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 I + EE RL YVG+TRA +L + + Sbjct: 582 ------------------------AIFSIDPQELEEERRLCYVGITRAQKRLYLTRAWRR 617 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 + +++ + + ++ D+ ++ +P +R Sbjct: 618 TVYGRTDFNEPSRFLDEIPEELIESLLETVSGGNPVDKTLSPGGEKQKGAFSPGDR 673 >gi|295109226|emb|CBL23179.1| ATP-dependent DNA helicase PcrA [Ruminococcus obeum A2-162] Length = 744 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 106/625 (16%), Positives = 196/625 (31%), Gaps = 120/625 (19%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 + + +D + + A + Y+ A ++N LDF+DLI+ T Sbjct: 138 RALLAQISHAKDELLNPDEMEMNAGADFNQKRAAQVYREYQAALRRNNALDFDDLIVKTV 197 Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 +L + + + +I++DE QDT+ Q++ + L + L Sbjct: 198 ELFQN---CDDVLQTYQERFRYIMVDEYQDTNTAQFKFVSLLASRYE----------NLC 244 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD+ QSIY F GA +L +R+ +I L ++RST +IL + V Sbjct: 245 VVGDDDQSIYKFRGANIGNILGFERVFPN--------AKVIRLEQNYRSTQNILDAANGV 296 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 + + + LW ++ + + + Sbjct: 297 IANNTERKEKT---------------------LW-------TENPEGEKIHFRQFMNGYE 328 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 + A + I+ D VL R + L Sbjct: 329 E-------AEYVVGDIAKRHREG---------AADYHDCAVLYRTNAQSRLFEEK----C 368 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 I IKDL+ + + + DDL+ +L P + ++ Sbjct: 369 LLANIPYKIVGGVNFYARKEIKDLLCYLKTVDNAADDLAVRRILNVPKRGIGATTVGRVQ 428 Query: 458 -TQRHETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 + Y+ ++ +SK + + +I L AQ S + I+ Sbjct: 429 DYADMMNISFYDALRVAEEVPSIGRSLSKIEGFVTFIQSLKSKAQAYSVSELLEEIIDLT 488 Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIKR 563 + + +E + +DE ++ T+ E+ ++L + E+ Sbjct: 489 GYVDELKAEDTDEARARIENIDELISKTVSYEEAMKDEEREATLSGFLEEIALIADIDSV 548 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 N + V +MT+H+AKGLE P V+L +F Sbjct: 549 D--ENQDYVILMTLHSAKGLEFPYVYLAGMEDGMFPGSMS-------------------- 586 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 I S EE RL YVG+TRA +L + ++ Sbjct: 587 ------------IFSGDPSDMEEERRLCYVGITRAMKELTLTSAQQRMVRGETQYNRVSR 634 Query: 684 MVYDSFHNDERVKKIKLTNSINKDE 708 V + + + E Sbjct: 635 FVREIPRELVELGHTVQEHKPKMPE 659 >gi|154246915|ref|YP_001417873.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154161000|gb|ABS68216.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1131 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 157/953 (16%), Positives = 307/953 (32%), Gaps = 98/953 (10%) Query: 2 KNRFGLSL----NESYELIYKDLWPLPYFQVSD----------INKYVSLSMETGNPTIL 47 + + + F + + V ++ N + Sbjct: 199 RRTLAAPPISPLDGRLTAFRQAAADFAGFMHGTGTTEPETVVIVERLVEMATALANGSDP 258 Query: 48 KKAQTLQQASQTQCIEER------FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101 L Q ++ + F+ Q + + ++ L + Sbjct: 259 ATPAGLVQLLTSRPHPDLCTKAGTFASYRKKGKWAAAAKQAGLSKADGDR----LNDDAD 314 Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 ++ A + A+ + Y + K+ + LDF+DLI D+L+ Sbjct: 315 AHYTACCDAWISLLQAAASQALAALIEEARPVLQRYRDHKRASAQLDFDDLIFAARDMLR 374 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT----HSSPRTLF 217 D +R + Q H+L+DE QDT +Q E+ L + G + P LF Sbjct: 375 DHDE---VRRALGQRFAHVLVDEFQDTDPLQTEIFWRLCGEPVEGNDDWTRFRIRPGALF 431 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQ+IY F GA+ ++ + + + ++ ++ + +FRS A ILT V++ Sbjct: 432 LVGDPKQAIYRFRGADVGAYVQARDAFRVQDPDS-----LLSISTNFRSCASILTFVNER 486 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 F +A GQ G L + + Sbjct: 487 FEAVLSA-----------------DGQPGFTALDPFHSDRGGLCVAALDIAVADENGKAS 529 Query: 338 QESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 E A IA + +I + I +G +R Q DI +L + Sbjct: 530 AEQQRDAEADAIAELCARLIESHPIIDRRSGAERPCQPGDIALLAPTGAELWRYEEALE- 588 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 I V L I+DL+AL R + + D L+ +L+ PL +E+D+ Sbjct: 589 ---RRGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLVGLTEEDLLD 645 Query: 456 ICTQRHETETVYEYIQKFANCGISKF------QHVIKYIHELIHIAQFCSPHDFFTLILG 509 I ++ + I + + VI+ + L +PH+ + + Sbjct: 646 IVWGLPRSKEQPDRIPRLDLSIDPAVITHSLARAVIERLQSLSRRGNSTTPHELLSQAVD 705 Query: 510 AKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSL-QELISELEQYPPTIKRAH 565 + R + R + +D +L+ + + + + + ++ Sbjct: 706 VMRVRPLLLERHRGQAERALANIDLYLSLSTGYAVRGLRAFAEAMTAAWSDEARAVEGRP 765 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 A V + T+H AKGLE P+V V+T + V + + + D + Sbjct: 766 DAQEEAVALFTMHAAKGLEWPIVIPVNTMTGVMAPESA--------VIDRQTETFYCSVL 817 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + K+ E RL YV TRA + L++ + ++ W +V Sbjct: 818 GVAPEGYETARQAEKEELDRERIRLWYVAATRARELLVL-----PRLDTTPSKSAWIGLV 872 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 S + + L + + + T Q P + + Sbjct: 873 DLSLADLPGLDASHLPAGLTAA-GAGTDNTQTRATFAAEAETITAAQTRLTWLAPSRDEN 931 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 + E + + LE+ RGLI+HKL++ + T + + + Sbjct: 932 AAGIVLREEEAAIWTGLADDQPPELEAAALVQGGRERGLILHKLMEEVLTGETSEAEAAL 991 Query: 806 TSYCTKNAKLWPAK---------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856 T + L + + L P + + D +E V Sbjct: 992 TDRAADLIHALGRSPVSAPATGLSAEELAACVVQTLALPDIA-ILRPDLLAEFPVYAAQA 1050 Query: 857 CPKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 + +G D ++I + + + ++K+ + + AQ+ Y Sbjct: 1051 SDGVETATAGITDALTIGEDGRPVVVVDWKSDVNP---EAQTLDHYRAQVRAY 1100 >gi|15895932|ref|NP_349281.1| ATP-dependent DNA helicase [Clostridium acetobutylicum ATCC 824] gi|15025705|gb|AAK80621.1|AE007765_3 ATP-dependent superfamily I DNA helicase, PCRA [Clostridium acetobutylicum ATCC 824] gi|325510084|gb|ADZ21720.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium acetobutylicum EA 2018] Length = 756 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 108/588 (18%), Positives = 199/588 (33%), Gaps = 116/588 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K+N LDF+DLI T +L KK + + ++ +I+IDE QDT+ Sbjct: 171 ADVYLLYQKKLKENNALDFDDLIFKTVELFKK---APDVLAFYQRKFRYIMIDEYQDTNK 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+E R L S+ + L VGD+ Q IY + GA+ + +L ++ + Sbjct: 228 SQYEFARLLA----------SANKNLCVVGDDDQCIYGWRGADIRNILNFEKDYRNAV-- 275 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 II+L ++RS +IL + V + S Sbjct: 276 ------IIKLEENYRSKGNILKAANGVIKNNPHEHLKSL--------------------- 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + S+ + + + D + A +I + Sbjct: 309 ------RTRSEDGAKIKVYRGETDLDEASFA----AFKINKEVKE-------------EK 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD +L R + + + I D IKD+M+ + I + Sbjct: 346 RSFKDFAILYRTNAQSRVFEDIF----IKRNIPYRIIGGLKFYDRKEIKDIMSYLKLIGN 401 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN------CGISKFQH 483 D++S ++ P + + + ++ E E +Y+ + N IS + Sbjct: 402 PLDNISLKRIINVPKRSIGQTTLGRLQQFADEVEECLYDALLDIENIPGIPKRAISSIKE 461 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I+ I + IL + + + I+ ++E +N + E Sbjct: 462 FTGMINSFIRRKDEINVSVLIKEILEQTGYLNELKASDDIQDKARIENIEELVNAAVDFE 521 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + +L + + + + V +MTVH+AKGLE PVVF+ + +F Sbjct: 522 ENSDDKTLAAFLEKTALVADVDNYN--EDADTVVMMTVHSAKGLEFPVVFMAGMENGIFP 579 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 580 GMASFNS----------------------------------EYEMEESRRLAYVGITRAK 605 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 ++L + K+ D + + N + + KD Sbjct: 606 EKLYMTSAKLRRVFGKTQAFEESDFINEIDENLKEYVTLDGEGRRKKD 653 >gi|218438504|ref|YP_002376833.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424] gi|218171232|gb|ACK69965.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424] Length = 772 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 116/628 (18%), Positives = 215/628 (34%), Gaps = 106/628 (16%) Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 + + FS+L + + KNI+T+++N + + + + ++ Sbjct: 138 ERGRTWNRNFSILDE---SDAQSIVKNIVTKQLNLNEKKFEPR--SIRYQISNAKNLGLN 192 Query: 117 YKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + + + + + Y++ N LDF+DLI+ L ++ + I Sbjct: 193 PQQYDRENPNYIGRVVAEVYEEYQKQLAANNSLDFDDLILVPVRLFQQNET---ILGYWF 249 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAE 233 + HIL+DE QDT+ IQ+++IR L + KN + R++F VGD QSIYSF A+ Sbjct: 250 NQFKHILVDEYQDTNRIQYDLIRLLCTNGETRKNKWNWQDRSIFVVGDADQSIYSFRMAD 309 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 +L + + ++++L ++RS +IL +++ +T Sbjct: 310 FTILLNFQSDFGDGLPD-DTTQTMVKLEENYRSCENILQAANQLIENNTQRIDKILKATR 368 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 +I + D + A + I Sbjct: 369 SI----------------------------GEDIYCYKADDERDE-------AGFVVSKI 393 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + + + +L R + I F Sbjct: 394 KQLKQENP--------ELNWGSFAILYRINAHSRSFEDAL----VKNNIPYNIVGGFRFY 441 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK 472 D IKD +A + I++ D +S + ++ +P + I + T E ++E I Sbjct: 442 DRQEIKDAVAYLKLIVNPSDTVSLLRIINTPRRGIGKSSIDALVTASQELGVPLWEIITD 501 Query: 473 ------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 A K I + +F S + L++ + + +E Sbjct: 502 ETSVNTLAGRAAKSVNQFAKMIQDFQAQTEFLSAAEMLDLVMEKSGYVAELQQKGTDEAQ 561 Query: 527 ---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKG 582 + + E N L+ ++ + L + LE + +V +MT+H+AKG Sbjct: 562 SRIENIGELFNAVLQFQEEYEET--SLQAYLENASLSSDLDSLKEGDEKVSLMTLHSAKG 619 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFLV +F H + Sbjct: 620 LEFPVVFLVGLEEGLFPHSRSLNDPLS--------------------------------- 646 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL YVG+TRA +QL + Sbjct: 647 -LEEERRLCYVGLTRAQEQLFLTFAKTR 673 >gi|167631048|ref|YP_001681547.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1] gi|167593788|gb|ABZ85536.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1] Length = 731 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 113/722 (15%), Positives = 227/722 (31%), Gaps = 134/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 G ++ + + L S + + ++ L Sbjct: 29 GAGSGKTRV-LTHRIGHLIEQCRVSPFHILAITFTNKAAAEMRERLGRLIGPRAHDVWVS 87 Query: 65 RFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIK 109 F L + ++ + + + + LKE LK+ Sbjct: 88 TFHSTCMRILRKDGEKLGYDRSFVIYDYDDQQRLLKECLKELNIDEKRFKPQAVGAAISS 147 Query: 110 IRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++R F+ ++ + Y++ K + +DF+DL++N L ++ Sbjct: 148 AKNRLVGPVAFERQAYDHFAQISAKVYHIYQKKLKAHNAMDFDDLLVNGVCLFREFPH-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I +DE QDT+ Q+ +++ L + + R L VGD+ QSIY Sbjct: 206 -VLDNYQDRFRYIHVDEYQDTNHAQYVLVKLLADKY----------RNLCVVGDDDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L +R + +++L ++RST IL + V + Sbjct: 255 GWRGADIQNILDFERDYPEAV--------VLKLEQNYRSTGKILEAANAVVGNNRGRKSK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + V Q +++ + AR Sbjct: 307 KLWTQNPSGQ--------------PIVAYQGETEHDE---------------------AR 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I TI + ++ +D +L R + ++ I Sbjct: 332 YIVRTIKRLSESENR---------PYRDFAILYRTNAQSRVLEEHF----MYAGIPYRIF 378 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 + IKD++A RFI + D +SF ++ P + + K+ Sbjct: 379 GGLRFYERKEIKDIVAYLRFISNPADAVSFRRVVNVPKRGIGDATVQKLLEHADSEGWTV 438 Query: 468 EYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + I EL A IL ++ + Sbjct: 439 GEALARVGEVPGLSRAVKALSAFGQMIEELRREAPSLLVTQIVEAILNRTGYVRELEAEK 498 Query: 522 GNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E I+ + EFL+ T ++ +L+E ++ + T + + V +MT+ Sbjct: 499 TEEAKGRIENIKEFLSVTKEFDRTADDKTLEEFLAGVSLVSDTDNYN--EDEDAVVLMTM 556 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVF+ VF H + Sbjct: 557 HSAKGLEFPVVFVAGMEEGVFPHSRV---------------------------------- 582 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 +++ EE RL YV +TRA ++L + + + + + + + + Sbjct: 583 QFEETQVEEERRLCYVAITRARERLYLARAWRRTLFGNTVSNKPSRFLEEIPASLLVEED 642 Query: 698 IK 699 + Sbjct: 643 DR 644 >gi|238019225|ref|ZP_04599651.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748] gi|237863924|gb|EEP65214.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748] Length = 729 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 105/615 (17%), Positives = 204/615 (33%), Gaps = 117/615 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +YE +KN LDF+DL++ LL+ + + K + +++IDE QDT+ Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSNEA---VLDKYSKRFRYVMIDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + + L + + + VGD QSIY++ GA+ + +L ++ Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + I+L ++RST IL + V E + Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIENNEGRPKKN--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW D + + + + + A I TI+ Sbjct: 307 LW------TDKTEGAKIQHFIAQSEHEE--------AAFIGDTIAKKHD---------IH 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D+ +L R + ++ + D IKD++A R + Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482 + DDLS + ++ P + + K+ R +++ + + K + Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYARANGTSLFMTLTQLHLVDTIKGKTKEKLE 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I L+ + + D IL Q + + + E L+ Sbjct: 460 EFGILIFTLVAEMEDRTVLDILESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519 Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + + +++ + ++ + V +MT+H AKGLE P+VFL +F Sbjct: 520 QDTNPTGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H + EE RL YVG+TRA Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717 +L I + + +++ + + + ++ + K + T Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663 Query: 718 HPENTPLEREETIKQ 732 P P+ R E I Sbjct: 664 RPVTKPIVRNEVIAD 678 >gi|307243582|ref|ZP_07525727.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM 17678] gi|306493023|gb|EFM65031.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM 17678] Length = 1310 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 153/999 (15%), Positives = 310/999 (31%), Gaps = 162/999 (16%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRD--RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 + I K + +K QD D R + A + K Y + K Sbjct: 325 KIIKKMVDSIISDIKSIQDRIYISLDEVRLELDMAYPYMRAVSNITKRFRQAYRQKLKSL 384 Query: 145 CVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 ++DF + D+L R + I + IDE QD++++Q ++ +++ Sbjct: 385 GLVDFSYITHTALDILIDRSGGSLEPSKIALAYRDLYEEVFIDEYQDSNMVQELILSTIS 444 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 +SP F VGD KQSIY F A P+ +++ + + I L Sbjct: 445 ---------RTSPGNRFMVGDVKQSIYRFRQAMPEIFMKKYDEY-AISQGPIEAGRKILL 494 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI------------------ 302 +FRS+A +L + VF D T R S + Sbjct: 495 YNNFRSSAQVLEACNHVFMSIMRKATGELDYTDEERLNPSAVFKELDYDSIDESVYRDLG 554 Query: 303 -----------------GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 G V++ ++ + + + S + Sbjct: 555 NDSDNTGITPGLSMENFNIGGPVEVRLVDKVFNEDGLDLEGVDLEDFRSISSFRSQCQAI 614 Query: 346 ARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 I ++N +F K R I+ +DI+VL R + + I Sbjct: 615 GAYIDQVVNNREKPYLVFDRKLDKYRKIEYRDIVVLFRS---LKFRVEDIEDVFSQLGIP 671 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 + + L + L R I + D+ + +++SP++ F D + ++ Sbjct: 672 IYSDLGGDYFSTLEVSIFENLLRIIDNPRQDICLLSVMRSPIYKFKPSDFALLRLLDKDS 731 Query: 464 ETVYEYIQKFANCGIS-------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + ++ + + + + I ++ +F +L Sbjct: 732 DIYGLLVKLYEMDQDELDNLDQDYKDLRARLVYFMDQIKAYRKMSSLMPLDEFIWFLLKD 791 Query: 511 KKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRA 564 G + L F E+ S+ L ++ +++ + Sbjct: 792 TGYYAYVGGLELGQHRQNNLILFFERARTFEKTSFKGLFNFVNYIDRVKTRGSDLGEAKE 851 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 S + N VR+MT+H +KGLE P+V + + ++ + L P I + Sbjct: 852 LSGDANVVRLMTIHKSKGLEFPLVIVAKADGKFNFKSSDHRLSLHQDLGYGPKIIDKSKR 911 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---- 680 + + + K ++ + E RLLYV MTRA ++L+ + + ++K ++ Sbjct: 912 INFPSMAKTYIDKKMELEQEAEEMRLLYVAMTRAKEKLVFFANIDDYSKKLDEWKSKLRD 971 Query: 681 ---------------WYDMVYDSFHNDERVKKI--------------KLTNSINKDEWIA 711 + D + S N E K I+ ++ +A Sbjct: 972 QDGRIESFEILNSRTYLDWIMMSIANLEVRGKALDARGKECDYMGYKDTNWLIDVEDKLA 1031 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIP---KKLFSPIKNDINEPYILNPSTIDTKGKT 768 EN + ++E+K P + P + + S + K Sbjct: 1032 VFKRAKDIENRVEPIRNMPLEPVEEEKDPGRKPTIVKPYAYQASALKPASISVSEVKKII 1091 Query: 769 NLESLLSDN--------------------------QTFNRGLIIHKLLQVIFTLPEHKRK 802 E +G I H +++++ ++ + Sbjct: 1092 EAEDQTKYENMYMSRTIPDLKTPSFMHTSKTKISYSPGEKGTIFHLVMELLDFEGLYRLR 1151 Query: 803 NFITSYCTKNAKLWPAKEYKNLLL----------SITRLLENPMMTTAMSCDS----YSE 848 K KN+L I ++ P+ S + E Sbjct: 1152 EDTKGLNDKIGADLQGLIDKNILRPEEVGTVNRKWIADFVKTPIFARLSQAASQGLLHRE 1211 Query: 849 VSVSGKINCPK----------KDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIP 897 ++ I + + +++ G +D ++ + +YKT + E I Sbjct: 1212 TAIDYNIGLTEIYKYESIDESERMMLVGIVDVFFEDQDGDLVLLDYKTDYVSKDRYEDIV 1271 Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + QL +Y + L+D + + S + Sbjct: 1272 ARYKPQLDLYARALEDISGKRVKEKYIYLFSVGDLVSYD 1310 >gi|326792061|ref|YP_004309882.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] gi|326542825|gb|ADZ84684.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] Length = 781 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 105/587 (17%), Positives = 197/587 (33%), Gaps = 115/587 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ K+N +DF+DL++NT L K+ + + +IL+DE QD Sbjct: 168 KMLAKIYEKYQGKLKENNAMDFDDLLVNTYLLFKE---CPDVLDYYQSKFRYILVDEYQD 224 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q++++ L + + + L VGD+ QSIY + GA+ +L ++ Sbjct: 225 TNGAQYKLVEMLAQGY----------QNLCVVGDDDQSIYGWRGADITNILGFEKDF--- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++I+L ++RST +IL + V + + + + Sbjct: 272 -----ADATVIKLEQNYRSTKNILDAANSVVAHNKGRKAKA------------------- 307 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + P ++ A IA TI + I Sbjct: 308 --LWTESEEGENISIIP--------------TNNEYQEAETIANTIIHAIENGER----- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD +L R + ++ I + IKDL++ + Sbjct: 347 ----EYKDFAILYRTNAQSRVLEEKL----ITGAIPYRLLGGTRFYERKEIKDLVSYLKV 398 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG-------ISK 480 + + +DD++ ++ P + I + + + K Sbjct: 399 VCNSKDDIAIKRIINVPKRGIGAASVNNIEEYAERNQMDFLEAARLCKEMGILGAGPSQK 458 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTL 537 I EL +A+ I+ + R G+ D +DE ++ T+ Sbjct: 459 VLGFTGLIDELQELAEENDIKLLLETIIEKTEFRNHIRMTEGDTAEDRLSNIDELVSKTI 518 Query: 538 RN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E SL E + E+ + N V +MT+H+AKGLE PVVF+ Sbjct: 519 HYMETAEDPSLGEFLEEVALVADIDNYD--EDSNSVVLMTLHSAKGLEFPVVFMPGVEEG 576 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F EE RL YVG+T Sbjct: 577 LFPSYMSLT---------------------------------EGDDKLEEERRLCYVGIT 603 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 RA ++L + + ++ + + + ++ N Sbjct: 604 RAREKLFMLYADQRTMFGRTQYSAPSRFIRELPKEVTNLAQLDKEND 650 >gi|238854177|ref|ZP_04644524.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4] gi|238833253|gb|EEQ25543.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4] Length = 747 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 130/760 (17%), Positives = 231/760 (30%), Gaps = 135/760 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L + +D Sbjct: 90 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 149 Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K ++T + + A Y+ K++ ++DF+DLI+ T L KK Sbjct: 150 KNDLLTPKDFKAQATSPFEKVTAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 207 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + Q + + I+L ++RST IL + V +N + Sbjct: 257 WRGANMENILNFEHDYQDD------EVNTIKLEQNYRSTGHILDAANSVIKNNQNRKPKK 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + ++ A + + Sbjct: 311 ---------------------LW-------TDKGDGDKINYYRA---QSGNDEALFIVSK 339 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I KD VL R + + I Sbjct: 340 INEEIKEHHRD-------------YKDFAVLYRTNAQSRNVEEAL----VKSNIPYRIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A + + + D +SF ++ P + K ++ + E Sbjct: 383 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + I ++ S +L ++ + Sbjct: 443 ETFKNLSLAPITGRPAKTLATFGTALKDAIEYSKTHSVTGLTEKLLADFGYKEALENEHT 502 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + L+EFL T R E ++L + +SE+ N+V Sbjct: 503 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEEGLFPLSRATGDPS------------------------- 595 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 EE RL YVG+TRA +L I + + + + + D Sbjct: 596 ---------ELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDL 646 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 +NS + P R ET K+ Sbjct: 647 EFVNPVQSNSAMSIPFAKSSERATSQVYRPKTRIETAKKA 686 >gi|261409570|ref|YP_003245811.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10] gi|261286033|gb|ACX68004.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10] Length = 776 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 120/723 (16%), Positives = 227/723 (31%), Gaps = 133/723 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + + + + ++ L Sbjct: 33 GAGSGKTRVLTHRIAYLIATRKAAPWSILAITFTNKAAREMQERVSKLVGREGQDIWVST 92 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110 F + L + I + L + K Q Sbjct: 93 FHSMCVRILRRDIERIGFTSNFSILDSTDQLSVIRNVMKQHNIDPKKFEPKAVQAAMSAA 152 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + + ++ TL + Y++ K N LDF+DLI+ T L K+ Sbjct: 153 KNELISPQQYEQKAGDYFETLVAKVYTEYQKRLKSNNSLDFDDLIMTTIQLFKE---VPE 209 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ + R L + S + VGD QSIY Sbjct: 210 VLDFYQRKFQYIHVDEYQDTNRAQYMLCRMLAD----------SHHRICVVGDSDQSIYR 259 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ + I L ++RSTA+IL + V + + + Sbjct: 260 WRGADITNILNFEQDYP--------EARTILLEQNYRSTANILNAANNVIGLNTGRKPKN 311 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + P+ + + + Sbjct: 312 ---------------------LW------TEQGEGPKIKVFRGDTEHDEGY--------F 336 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + IS I +D +L R + +I + I Sbjct: 337 VTSEISKNIKDGK----------SYQDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A R I + +DD+S ++ P + + + K+ E Sbjct: 383 GIKFYDRKEIKDMLAYLRLISNPDDDISLTRIINVPKRSIGDTTVAKLAAAAGERGISIF 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + FA + I L + +F S + IL + R + + Sbjct: 443 RVLEIVDDLGFAGRTRNALVGFYDMIAALSRMVEFLSVTELTEKILEMSEYRLELQNENT 502 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMT 576 E ++ +DEFL+ T E+ N SL +++L + V +MT Sbjct: 503 IESRSRLENIDEFLSVTQEFEKNNEDKSLVSFLTDLALIADIDSMNDDEEDRDDAVVLMT 562 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE PVVF++ VF H + Sbjct: 563 MHSAKGLEFPVVFIIGMEEGVFPHSRAFMDNEELEEERRL-------------------- 602 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 YVG+TRA QL + + ++ + + + Sbjct: 603 --------------AYVGITRAEKQLFLSCARMRTLFGRTTANMPSRFLEEIPEELKEDT 648 Query: 697 KIK 699 ++ Sbjct: 649 QMA 651 >gi|254696353|ref|ZP_05158181.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] Length = 467 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 136/461 (29%), Positives = 211/461 (45%), Gaps = 25/461 (5%) Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 + +L A R++ ++R G E D++DEF N+ L E+ LQ + LE P IKR Sbjct: 1 YARVLSADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAAAPEIKR 60 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIW 621 +EVRIMT+H AKGLE VVFLVD GS V++ K+ D P + +W Sbjct: 61 ELDQGRDEVRIMTMHAAKGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLW 120 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 P S + + I+ LK +EEY RLLYVGMTRA D+LIIC + + + TW Sbjct: 121 QPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLIICGYRG----TRESGETW 176 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + +V D+ +T A P + EE +P Sbjct: 177 HRLVEDALAAKSETFVHPVTGV-------AARRYRKTPRSFIEINEEDQAGATSLPPLPH 229 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------------DNQTFNRGLIIHKL 789 P+K + P L PS + + E L RG IH L Sbjct: 230 DYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDLSSPVLQPGTGAPAFALRRGTAIHML 289 Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849 LQ + + KR++ Y + A WP E S+ +L++P + S EV Sbjct: 290 LQYLPDVAPEKREHLAADYLARIAADWPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEV 349 Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909 +V G I+ +D +SG+ID+IS+ + + I +YKT+ P+ +E +P + AQL++Y + Sbjct: 350 AVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYKTNRPPPKTLEAVPSAYRAQLALYRE 409 Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 +L+ YP + + L++ P + ++P L+ A + Sbjct: 410 LLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAMGALKDT 450 >gi|319892948|ref|YP_004149823.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus pseudintermedius HKU10-03] gi|317162644|gb|ADV06187.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus pseudintermedius HKU10-03] Length = 731 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 117/718 (16%), Positives = 230/718 (32%), Gaps = 128/718 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVQALVGEEAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK+ E K+ Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKRENIDPKKYEPRIFIGEISKL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T ++ + + Y++ +N LDF+DLI+ T L ++ Sbjct: 148 KNDLLTPAKAEAEADDFYSRMVATVYKGYQQQLVRNQALDFDDLIMTTIRLFER---VPD 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ ++ L + F + L VGD QSIY Sbjct: 205 VLDFYQNKFQYIHVDEYQDTNTAQYTLVNMLAQKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA +L ++ I L ++RST IL ++V + Sbjct: 255 WRGANIHNILSFEKDYPN--------ARTIFLEQNYRSTKTILQAANEVIRHNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + Sbjct: 307 ---------------------LW-------TANQQGEKIHYYEAMSERDET-------EY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + KD+ VL R + ++ I V Sbjct: 332 VVREIFKQQKKGK----------RYKDMAVLYRTNAQSRVLEETF----LKSNIPYVMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI T++ Sbjct: 378 GQKFYDRKEIKDLLSYLRLIANSADDISLQRIINVPKRGIGPSSVEKIATYAVDHELTMF 437 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + + + L+ +F + +L R+ Sbjct: 438 DALAEVDFIGLSKKVTQAAAEFYQLMSNLMQEQEFLEVSEIVDEVLEKSGYREMLEREQS 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ + E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 IESRSRLENIDEFMSVPVDYEKNTPLEEQSLINFLTDLSLVADVDGANLEDGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H I+ Sbjct: 558 AKGLEFPIVFIIGMEESIFPHIR--------------------------------AIQSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE R+ YV +TRA ++L + ++ + + + + + + Sbjct: 586 SDHEMEEERRISYVAITRAEEELYLSHATSRTLFGRPQSNARSRFLNEIPEELLDLPE 643 >gi|166033310|ref|ZP_02236139.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC 27755] gi|166027667|gb|EDR46424.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC 27755] Length = 763 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 118/713 (16%), Positives = 229/713 (32%), Gaps = 135/713 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 38 GAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAAEMRERVDNLVGFGSESIWVST 97 Query: 66 FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F + L + N + + + +++ K Q + ++R + + Sbjct: 98 FHSMCVRILRRHIALLGYDTNFTIYDTDDQKTLMRDVCKLLQIDTKIYKERMLIGTISHA 157 Query: 123 TLASL-----TL----------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 L L + YE+ + N LDF+DL++ T L + + Sbjct: 158 KNEMLTPEEFRLQAGGDFHQKKIADVYEEYEKQLRANNALDFDDLLLKTVQLFQTQHD-- 215 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I++DE QDT+ +Q+E++R L S + L VGD+ QSIY Sbjct: 216 -VLEYYQERFRYIMVDEYQDTNGVQFELVRLLA----------SRYQNLCVVGDDDQSIY 264 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA+ + +L +++ K ++I+L ++RSTA+IL + V S + Sbjct: 265 KFRGADIRNILDFEKVF--------TKAAVIKLEQNYRSTANILNAANAVISHNHGRKDK 316 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + + ++ + + + A Sbjct: 317 T---------------------LW-------TDNEDGDKIAFRQFDTAFDE-------AE 341 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I I + +D +L R + + I Sbjct: 342 YIVSDIKEHVEKGE---------CDYQDNAILYRTNAQSRMFEEKF----VTANIPYKII 388 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 IKD++A + + + +DDL+ ++ P I ++ E Sbjct: 389 GGINFYARREIKDILAYLKTVDNGQDDLAVRRIINVPKRGIGLTSINRVQEYAAMHEKGI 448 Query: 468 EYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 K A+ G+SK + + I A+ + H+ I+ + + Sbjct: 449 YECLKGADLIPDIGRGVSKLESFVALIEHFKVDAKELTLHELMQEIIDETGYIESIQAES 508 Query: 522 GNEVI---DVLDEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + +DE LN + E+ + +L + E+ N + V Sbjct: 509 EIEAQARIENIDELLNKVVAYEEVCEEHDEPVTLSGFLEEVALVADIDN--LDENSDYVV 566 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE P V+L +F Sbjct: 567 LMTLHSAKGLEFPRVYLAGMEDGLFPSYMTVT---------------------------- 598 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 EE RL YVG+TRA +L + ++ + Sbjct: 599 ----ADDPDELEEERRLCYVGITRAQSELTMTCARRRMVRGETQYNKMSRFLK 647 >gi|283796111|ref|ZP_06345264.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1] gi|291076326|gb|EFE13690.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1] Length = 830 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 111/713 (15%), Positives = 223/713 (31%), Gaps = 131/713 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + Sbjct: 28 GAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAAEMRERVDQIVGFGSESIWVST 87 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF-- 120 F L + + + + + +K+ K+ Q + + ++R ++ Sbjct: 88 FHSSCVRILRRHIDRLGYDTSFTIYDTDDQRTLMKQIFKRLQVDTKQFKERSVLGRISSL 147 Query: 121 --KSTLASLTLA-----------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + L L Y++A K N LDF+DL++ T +L + Sbjct: 148 KNEMIRPDEALTNAGGDFGEKKIAELYGEYQKALKNNNALDFDDLLVKTVELF---EADQ 204 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I++DE QDT+++Q++++ L + R + VGD+ QSIY Sbjct: 205 EVLAYYQNRFRYIMVDEYQDTNMVQFKLVDLLAGKY----------RNICVVGDDDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA+ + +L ++ +I+L ++RST +IL ++V + Sbjct: 255 KFRGADIENILSFEKAFP--------GAQVIKLEQNYRSTQNILNAANEVIRNNRGRKDK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + G+ V+L + + + A Sbjct: 307 TLWTAN---------GEGERVRLAQFDTAYEE--------------------------AD 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 IA I K D VL R + L+ + I Sbjct: 332 YIACDIKA---------ESAKENSPFSDFAVLYRTNAQSRLLEEKM----ILHSIPYRLV 378 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 IKD+++ + I + +DDL+ ++ P + ++ + Sbjct: 379 GGVNFYQRKEIKDILSYLKTIANGQDDLAVQRIVNVPKRGIGATSMGRVTAFASAGGMSF 438 Query: 467 YEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 Y+ + + K + I + S + IL R++ + Sbjct: 439 YDALLRVKAVPSIGKAADKIGVFTEQIEDFKARLGELSLKELIEEILENTGYRKEIEAEG 498 Query: 522 GNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E + E +N + + +L + E+ + N V +MT+ Sbjct: 499 EVEAETRLQNIQELINKAVAYWDNEENPTLDGFLEEVALVADVDSMD--ESENRVVLMTL 556 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P V+L +F Sbjct: 557 HSAKGLEFPHVYLSGMEDGLFPSSMSIMSDDGD--------------------------- 589 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA ++L + ++ V + Sbjct: 590 -----AVEEERRLCYVGITRARERLTLTAARQRMTNGETRFSRLSRFVEEIPP 637 >gi|304405679|ref|ZP_07387338.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9] gi|304345718|gb|EFM11553.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9] Length = 801 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 114/758 (15%), Positives = 225/758 (29%), Gaps = 152/758 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ + + + L S + Sbjct: 35 GAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREMQDRVAKLVGPSGSDIWVST 94 Query: 66 FSLLSSFFLTQKFT------------------------PQKNIITQEINKKSPDLKEKLK 101 F + L + + ++NI T++I ++ + Sbjct: 95 FHSMCVRILRKDISRIGFTSSFSILDSGDQLSVIRTIMKEQNIDTKKIEP--KTIQAAIS 152 Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 +++E + K+ +A + Y++ + N LDF+DLI+ T L Sbjct: 153 SAKNEL--LSPERFAAKVGDYFE---QIAANVYEQYQKRLRANNSLDFDDLIMTTIKLFT 207 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + + + +DE QDT+ Q+ + R L + + VGD Sbjct: 208 DEPD---VLQFYQNKFRFLHVDEYQDTNRAQYMLCRMLAD----------KHHNICVVGD 254 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 QSIY + GA+ +L ++ + I L ++RST++IL + V Sbjct: 255 SDQSIYRWRGADITNILNFEQDYPES--------KTILLEQNYRSTSNILNAANAVIGNN 306 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 + LW D + + + Sbjct: 307 TGRKPKR---------------------LW------TDQGAGDAISIYQADSEHDEGY-- 337 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + I + D +L R + +I + Sbjct: 338 ------FVTGEIGKHYKEGR----------KYADHAILYRTNAQSRVIEEIL----IKSD 377 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQR 460 I D IKDL+A R I + +DD+S ++ P + + KI Sbjct: 378 IPYQIVGGVKFYDRKEIKDLLAYLRLISNPDDDISLTRIINVPKRGIGDTTVGKIAEEAA 437 Query: 461 HETETVYEY--------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 +++ A + I L + + S + +L + Sbjct: 438 RRGISMHAALGTLDEFGGLDVAGKTRAALVQFRDMITNLTRMVDYLSVTELTEKVLEMSE 497 Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN 568 R + E ++ ++EFL+ TL E+ N SL +++L Sbjct: 498 YRLELQRENTLESKARVENIEEFLSVTLEFEKNNEDKSLVAFLTDLALIADIDSMNKEEE 557 Query: 569 ----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + V +MT+H+AKGLE PVVF++ VF H + Sbjct: 558 NGQPQDAVVLMTMHSAKGLEFPVVFIIGMEESVFPHSRAFMDNEELEEERRL-------- 609 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 YVG+TRA +L + + ++ Sbjct: 610 --------------------------AYVGITRAEKRLYLLCARMRTLFGRTATNPPSRF 643 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 + + + +++ + T Sbjct: 644 LMEIPEDVKQMASPAGRIGGSGGGLGYSGGVAGGWSAT 681 >gi|283782861|ref|YP_003373615.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis 409-05] gi|283441838|gb|ADB14304.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis 409-05] Length = 1023 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 107/621 (17%), Positives = 201/621 (32%), Gaps = 115/621 (18%) Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L T+ K + I K D K L +++ + + + + Sbjct: 254 ERLVKIIATELNVDIKRFTPRSILGKISDCKNSLITWREQLDMYANDYKPGVAGQQIAHA 313 Query: 127 L---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A Y+ + +DF+DLI+ T L+++ +A + +IL+D Sbjct: 314 GNSEAVYATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPEAA---QYYRHKFRYILVD 370 Query: 184 EVQDTSLIQWEVIRSLTE-----DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 E QDT+ Q+E+IR L + +++P ++ VGD QSIY+F GA+ + + Sbjct: 371 EYQDTNHAQYELIRELAGVDVKQNSANPSQQNNTPASITVVGDSDQSIYAFRGADIRNIQ 430 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 ++ + I L ++RST IL + V S + + Sbjct: 431 DFEKDFPN--------ATTIMLEQNYRSTQTILDAANAVISHNQGRKPKK---------- 472 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 LW + SA A +A I+ + G Sbjct: 473 -----------LWTALGKGTPITGYAA--------------DSAQQEAAWVAQEIARLAG 507 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + + D+ ++ R + + + + + Sbjct: 508 EE---------GVAYSDMAIMYRANAQSRSLEDAL----VKAGLPYQLVGGTKFYERREV 554 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--- 474 KD +A + + + +DD++ +L P + + + + ++ ++ Sbjct: 555 KDALAYLQSMANPDDDVNMRRILNVPKRGLGARAEALLTLYAQTQGVSFWQALEHLESIE 614 Query: 475 ---NCGISKFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 +K + + +H LI P IL + + + Sbjct: 615 GMPTRTATKLKEFRELMHNLITCMQNDDSKPSKVIDSILNDSGLLEDLQRSEDPQDAARV 674 Query: 527 DVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 D L + + EQN+ S+ + + + +V +MT+HTAKGLE Sbjct: 675 DNLSQLQSVAAEYEQNTPDASVAGFLETTALVADSDQLPDENEDTGKVTLMTLHTAKGLE 734 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVFL F H Sbjct: 735 YPVVFLTGMEQGTFPHSRAL----------------------------------EDDGEL 760 Query: 645 EEYNRLLYVGMTRASDQLIIC 665 E RL YVG+TRA +L + Sbjct: 761 CEERRLAYVGITRAKQRLYVT 781 >gi|257456155|ref|ZP_05621352.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] gi|257446241|gb|EEV21287.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] Length = 1167 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 151/924 (16%), Positives = 287/924 (31%), Gaps = 119/924 (12%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K DL L ++ + ++ Y + L L + KK+ +L F Sbjct: 283 KACKDLCSALSENSGRLQSL---YHFYAHKEQMQKIYALCSVLQERFIAEKKRRSILHFG 339 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 D+ D L K I+IDE QD + +Q +++ L E + Sbjct: 340 DIAQLAVDALITDPDLRLFYKKQTHR---IMIDEFQDNNSLQRDLLFLLAEKEARTDQSI 396 Query: 211 SSPRTL-----FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 P L F VGDEKQSIY+F GA+ + ++ G + I L ++R Sbjct: 397 PKPDELVPDKLFFVGDEKQSIYAFRGADVSVFRMLSQDLRQ-----GGSSASINLQTNYR 451 Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 + D+L + F ++ + + I + ++ Q D + Sbjct: 452 TEPDLLNFFNTAFMQVFYSEVNQPLTGGVPAFEAEFIPILSR-DAVPNLMPQTDILFIDK 510 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRK 382 + + A +A I+++ + + R D VL+R Sbjct: 511 KRFANPSDTDTVMFTPIECEAYTLAQKIADIHAERYLVYDEALHATRPCTWSDFAVLLRA 570 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 + R K I + + L + D+ AL R + D + L+ Sbjct: 571 STHQAVYERFFRAFK----IPYISVQQKGLFHDAPLNDICALLRLAVYPNDRAVYAQTLR 626 Query: 443 SPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499 SP S+ ++ E E ++ F + + S Sbjct: 627 SPFVRLSDRSFTRLMLYSLEHEGQPFNPAAAEELEAEDRQYFLTACALFERIQGYIKKKS 686 Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISEL- 554 + T + + R ++ D L +Q+ + + LIS + Sbjct: 687 NAELITALWYDEGYRYILLTEPRYHRYLELYDYLFALAVKADEAKQSLSAFIDTLISYIH 746 Query: 555 -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 E+ ++ + V+IMTVH +KGLE P+V + D G+ S + + L Sbjct: 747 AEERIEDMEIPLEHGGDAVKIMTVHKSKGLEFPIVCIPDCGNAGKSETKEGMVFLHKDLG 806 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671 +P S N +L + E RLLYV +TRA +L++ T Sbjct: 807 PVIHLPPETKNDPSANIFFEELRQEANAKHLAETKRLLYVAVTRAKVRLVMSGVQETGCD 866 Query: 672 --------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +++ R+++ ++ + +D + Sbjct: 867 AEDLPEFPRGLEEIRQQLVQPQQEEKNRSFFQLLLPAVSDDIAGLHFAEVLPLPASTVQH 926 Query: 712 YE--------------WSTHHPENTPLEREETIKQLMDEQK--IPKKLFSPIKNDINEPY 755 + +N PL I E+ + +P+ + + Sbjct: 927 TAEDRQRFNLDETRALYRQAAEKNFPLAEPRVIPATQFEKDTQWLRLSEAPLPSTEHTEK 986 Query: 756 ILNPSTID------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 + S G E + + G ++HK ++ Sbjct: 987 EIAFSADAISATDAASTAKPVDGNIGAEQGEDELSSTEFGTLVHKAME------------ 1034 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863 + + + PAK + + L +P A + + Sbjct: 1035 --ARFLDRPC-ILPAKYAREVEKLCAAFLSSPFGQKAAEASFRK---TEYGFLTLYEGKL 1088 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN------ 917 I G+ID + + +I +YKT + P H QL IY+ +++ Y Sbjct: 1089 IIGQIDLLFEYEDTAYIIDYKTDQKI------YPEKHRKQLLIYKTAVENFYKMEGFGQG 1142 Query: 918 ------KSLVCLLIYVSEPKVFII 935 K + + Y+ + Sbjct: 1143 TGGSQPKPVKAYIFYLRSKTAVEV 1166 >gi|296132369|ref|YP_003639616.1| ATP-dependent DNA helicase PcrA [Thermincola sp. JR] gi|296030947|gb|ADG81715.1| ATP-dependent DNA helicase PcrA [Thermincola potens JR] Length = 741 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 108/625 (17%), Positives = 208/625 (33%), Gaps = 116/625 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ K+N +DF+DLI+ T +L +K A + + +IL+DE QD Sbjct: 165 EVGARVYELYQHKLKENNAMDFDDLIMKTVELFEK---FAQVLDYYQERFKYILVDEYQD 221 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +IR L + R L VGD+ QS+Y + GA+ + +L +R Sbjct: 222 TNHAQYRLIRLLAAKY----------RNLCVVGDDDQSVYGWRGADIQNILDFERDYP-- 269 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + +I+L ++RST +IL + V + S + Sbjct: 270 ------EARVIKLEQNYRSTKNILAAANHVVKRNIGRKEKSLWTENEEGLLPVFF----- 318 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + A IA I + + Sbjct: 319 ------------------------------RAQDQYQEAYYIAERIYRLHLEEDR----- 343 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +D VL R + +I + I + IKD++A R Sbjct: 344 ----PYRDFAVLYRTNAQSRVIEEVF----IKNGIPYTIVGGLKFYERKEIKDILAYLRV 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISK 480 I + D++S ++ P + + KI ++ + YE + + +S Sbjct: 396 ISNPADNISLQRIINVPRRGIGDTTMGKIAEYANYQGISHYEALIRAEEIPGLTGRSLSP 455 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537 + + I A+ S + +L ++ + E + + EFL+ T Sbjct: 456 VKKFGQLIEAFRQTARHSSVTELVNEVLQQTGYIRELEAEKSVEAQTRLENIKEFLSVTK 515 Query: 538 RNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 + + + L++ ++E+ ++ + V +MT+H+AKGLE PVVF+ Sbjct: 516 EFDARAAENRLEDFLAEVSLISDVD--EYTEGADAVVLMTLHSAKGLEFPVVFIAGMEEG 573 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H L S EE RL YVG+T Sbjct: 574 IFPHS----------------------------------RSMLDNSQLEEERRLCYVGIT 599 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA ++L + + + + + + + + + Sbjct: 600 RAKERLYLTAAWERNLFGNTMFNPVSRFIEEIPPALLDTEGGERRRHEQESREMFRGSRD 659 Query: 717 HHPENTPLEREETIKQLMDEQKIPK 741 ++ +R + + Sbjct: 660 KDRRSSFADRAHVSPVGSYKIEDRP 684 >gi|238926784|ref|ZP_04658544.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531] gi|238885316|gb|EEQ48954.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531] Length = 746 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 118/796 (14%), Positives = 233/796 (29%), Gaps = 144/796 (18%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78 + L V + ++ TL + F + L + Sbjct: 39 RIANLLEHGVPPYRILAITFTNKAAREMRERVDTLIGDAAQDVWLSTFHSFCARLLRMEL 98 Query: 79 TP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIKIRDRFN--TYKMF 120 KN + + ++E LK+ Q ++R Sbjct: 99 EHYGRYAKNFVIYDAADSKGLIRECLKELNIDEKHTAPGAVQAHISDAKNRLLDVAAFTA 158 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 ++T + A Y+ ++N LDF+DL++ T +LL K + +R K ++ +I Sbjct: 159 QATDFFAEQVAKIYALYQSKLQENNALDFDDLLMLTVELLTKNEE---LRMKYQKKFQYI 215 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ Q+ + + L + R + VGD QSIY + GA+ + ++ Sbjct: 216 LVDEYQDTNGAQYAITKLLAAE----------HRNICVVGDADQSIYGWRGADMRNIMNF 265 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + ++I L ++RST +IL + V + Sbjct: 266 EQDYP--------EATVILLEQNYRSTKNILAAANAVIENNLTRKKK------------- 304 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 +LW + ++ + ++ A I + + Sbjct: 305 --------ELWTDNPTGDRI--------------TIYEGATEKNEASYIVREVERLH--- 339 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 ++ DI VL R + I + D IKD Sbjct: 340 ------TMFHVKYGDIAVLYRTNAQSRNIEEAFYAT----GVPYAMVGSVRFYDRREIKD 389 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETVYEYI 470 ++A R I + D LS + ++ P I ++ E + I Sbjct: 390 IIAYLRVIYNPRDTLSLLRIINVPRRGLGPTSIARMMETAEEYRISLFEVITDAQLLSMI 449 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVID 527 K + + + + H+ ++ + ++ Sbjct: 450 PKLSAKVKVALEEFAAMVFTFMGQLGTRPIHEIVEDVIETSGYAAALEEEKKEDNRDRLE 509 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESP 586 L EF++ + + L L Q + + V +MT H AKGLE P Sbjct: 510 NLREFISVAKNFDDGAEEGENGLADFLAQIALISDVDQTEQSDGTVTLMTFHAAKGLEFP 569 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+ +F H L + EE Sbjct: 570 AVFMAGMEEGLFPHSRTL----------------------------------LDDTEIEE 595 Query: 647 YNRLLYVGMTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 R YVG+TRA +L + + S + ++V + + Sbjct: 596 ERRTCYVGITRAERRLYLTYARQRTIYGRTEMSRPSRFLAEIPEELVEHKEADFFGGADL 655 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK-KLFSPIKNDINEPYIL 757 + ++I + + + + ++ + K + Sbjct: 656 RAPSNIWSERSTRTQRKRYIAPPQHTAADGSVIRPDVSAAFKAGDAVRHSKWGDGRIVAI 715 Query: 758 NPSTIDTKGKTNLESL 773 + S D + Sbjct: 716 SGSGEDAELSIAFPGE 731 >gi|325972063|ref|YP_004248254.1| UvrD/REP helicase [Spirochaeta sp. Buddy] gi|324027301|gb|ADY14060.1| UvrD/REP helicase [Spirochaeta sp. Buddy] Length = 1104 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 137/921 (14%), Positives = 306/921 (33%), Gaps = 73/921 (7%) Query: 43 NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102 + T+ + + + +K + ++ +KE +++ Sbjct: 223 SKTVQTAREAALSLRSSLEACTSVEEKHRILCSALGYFRKPGAGKA--EQMLYIKETIEE 280 Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 K+ + A L+ + A Y++ K+++ VL F D+ D+L Sbjct: 281 FNQLRKKLCIARSVLLGSSQLQAVLSFMQEYIASYQKQKRQSGVLTFADISSLAVDILSS 340 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL-----F 217 +R+ +I+IDE QD + Q +++ L+E + P L F Sbjct: 341 N---KSLRHYYKMAYKYIMIDEFQDNNEQQKQLLYLLSERLDREGDGIPGPENLKADKLF 397 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGDEKQSIY F G++ R I+L ++RS ++ + + Sbjct: 398 FVGDEKQSIYRFRGSDVSVFKRLS------WELCANGGRHIQLDTNYRSEPALIQWFNTL 451 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 F G S ++ + W + S+C + + S D Sbjct: 452 FPSVMQNNGESFEADFSAL-------------GWREPSEGIQSKCTVLIKPYESKLDEDE 498 Query: 338 QESSA-SILARRIAYTISNMIGTDTIFSNGKKRVIQA--KDILVLVRKRKDTPLITFLTR 394 ++++ A +A I M+ TD+ + + DI +L+R R Sbjct: 499 EDAADTDAEAYAVASLIDEMLHTDSYLIPSETGPHRPATSDIALLLRTTSSQLSFEKALR 558 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + I L D+ A+ + +L +D +++ +L+SP N S+ + Sbjct: 559 ----RFNIPYTVQAARSLMLEAPANDMYAMLQLVLYPQDRHAYMTVLRSPFCNLSDFGMT 614 Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 ++ + S+ + V + L + S +L+ Sbjct: 615 EVL-----DCPCFSIPDSIGPEDRSRLEAVGAFYAHLKKASATASLSSLVSLLWYESGYY 669 Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANH 569 ++ +V FL+ + +Q SL + + L ++ + Sbjct: 670 LSLVATPSYQVYTEHYAFLHRLAQMQQQQGKSLSQFVDFLRDNLAQNEKIENLEVIKEQE 729 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629 V+I+++H +KGLE P+V + +TGS+ S + + S+ +P + +++ Sbjct: 730 EGVQILSIHKSKGLEFPIVVVANTGSKGRSEEDAVSTYQGISIPHYVSVPYHVSETRIET 789 Query: 630 NIVSDL---IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 + + + E RLLYV +TRA +++ + +N + ++ Sbjct: 790 AKHAGQLLDKGTEAQLNRAELKRLLYVALTRAQTHVVVSGCFSKTNRSLAEDGRSSTLLL 849 Query: 687 DSFHNDERVKKIKLTN------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 + D + + + E+ + Sbjct: 850 MLAQSLGIDIDAPALEQGIVTVRSIADIAESLLYDQKREDEQAFEQRIDAAASFYAPREE 909 Query: 741 KKLFSPIKNDINEP-YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799 PI+ + L T ++L S+ Q + G +H L + + P Sbjct: 910 AYEMRPIRYAVTALHAPLFSETAKALPSLASDALFSEAQVADFGTFVHALCEQMVLQPSQ 969 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-----SEVSVSGK 854 + ++ L + ++ + EV Sbjct: 970 AIDA-----LAMLPPSLGGVNQQQVIADALFLCHAFVGSSWYRTEVQPYPVSCEVGFFSL 1024 Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 + + +++ G +D + + + + ++KT + H QL Y + + Sbjct: 1025 MEHEGRAVVVEGSVDLLIKRKDHYLVVDFKTDRFRDE------EVHRFQLQTYMQAMARI 1078 Query: 915 YPNKSLVCLLIYVSEPKVFII 935 + + ++Y+ + + ++ Sbjct: 1079 H-QCPVKGCVVYLRDVQNIVV 1098 >gi|282851210|ref|ZP_06260575.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1] gi|282557178|gb|EFB62775.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1] Length = 730 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 130/760 (17%), Positives = 231/760 (30%), Gaps = 135/760 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 13 GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 72 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L + +D Sbjct: 73 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 132 Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K ++T + + A Y+ K++ ++DF+DLI+ T L KK Sbjct: 133 KNDLLTPKDFKAQATSPFEKVTAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 189 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 190 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 239 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + Q + + I+L ++RST IL + V +N + Sbjct: 240 WRGANMENILNFEHDYQDD------EVNTIKLEQNYRSTGHILDAANSVIKNNQNRKPKK 293 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + ++ A + + Sbjct: 294 ---------------------LW-------TDKGDGDKINYYRA---QSGNDEALFIVSK 322 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I KD VL R + + I Sbjct: 323 INEEIKEHHRD-------------YKDFAVLYRTNAQSRNVEEAL----VKSNIPYRIVG 365 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A + + + D +SF ++ P + K ++ + E Sbjct: 366 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 425 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + I ++ S +L ++ + Sbjct: 426 ETFKNLSLAPITGRPAKTLATFGTALKDAIEYSKTHSVTGLTEKLLADFGYKEALENEHT 485 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + L+EFL T R E ++L + +SE+ N+V Sbjct: 486 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 543 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 544 LMTLHAAKGLEFPVVFLVGMEEGLFPLSRATGDPS------------------------- 578 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 EE RL YVG+TRA +L I + + + + + D Sbjct: 579 ---------ELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDL 629 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 +NS + P R ET K+ Sbjct: 630 EFVNQVQSNSAMSIPFAKSSERATSQVYRPKTRIETAKKA 669 >gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110] gi|27356373|dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110] Length = 1099 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 166/941 (17%), Positives = 327/941 (34%), Gaps = 96/941 (10%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNP-TILKKAQTLQQ-ASQTQCIEERFSLLSSFFLTQ 76 D +P DI +L+ T L + L + A R + Sbjct: 226 DHVDVPPEADPDIVALEALASHFDGAFTPLPGFERLWELAHPPHLPIMRKDASVLLDYRR 285 Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 + +K + ++ + +E + + + + R T + + + A Sbjct: 286 RSLWRKVAGKADGDRLADQAEEHYARCRTAYGALMGRIATAIIGSFSNEL----DGVLAD 341 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 YE K+ VLDF+DL+ +L+ + +R + + IL+DE QDT +Q E+I Sbjct: 342 YEAFKRSAAVLDFDDLLYTCRQVLRDFPI---VRNTAGERFSRILVDEFQDTDPLQAEII 398 Query: 197 RSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 L D H+ P LF VGD KQ+IY F GA+ L ++ +++ Sbjct: 399 FLLCSDAADAAAWHTKALRPGQLFVVGDPKQAIYRFRGADLATYLTVRQSIERQFPGN-- 456 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I+++ +FRS IL V++ FS Q G V L Sbjct: 457 ---IVKVSANFRSRDPILRHVNECFS------------------EHLSQQQAGYVALHAT 495 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT-DTIFSNGKKRVIQ 372 + ++ + S S+ AR +A + +IG + ++G+ R + Sbjct: 496 RGASDNALPGVAKISVELPP-ETNVASARDEEARVVAEVCARLIGNVELKLNDGRARRLT 554 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 DI +L D I L +DL+AL R + Sbjct: 555 PGDIALLAPVSTDLWRYERALEE----AGIPFASQAGKNLFKRQEAQDLVALVRALADPR 610 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI-----QKFANCGISKFQHVIKY 487 D L+ +L+ PL +E ++ I + +E + A + V+ Sbjct: 611 DTLALGALLRGPLVGLTERELLDITSDLPPSEDPDQIAGLTILTDPATVHHDTAREVLGI 670 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNEQNSY 544 + +L SP + + R +R ++ + +D FL + Sbjct: 671 LGDLRRRVNGTSPAMILAEAIERLRVRSIVAARSADQAVRSLANIDGFLERARSYRVRGF 730 Query: 545 SSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + ++ E + + A+ + I+TVH++KGLE PVV ++ S + Sbjct: 731 ARFARDIDEEWSDGSSSAEGMVEADGQSIEIVTVHSSKGLEWPVVIPINRASMPRRSETF 790 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 SL+ G I ++D + + + E RLLYV TRA + LI Sbjct: 791 VYRRSDESLHWALGKII--------PPSLADALLTEEAEKRAENLRLLYVACTRAMESLI 842 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 I S ++++ +++I + + + + P + Sbjct: 843 IPDFSWSNDDS------------------WAKLLSFRSDTIPQLDISGFPRARVSPSSAA 884 Query: 724 --LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781 L+ E + + K+ ++ + I + L + + Sbjct: 885 ENLQSAEIFAEERARLEAAPKVRWITPSEGDPDVITEQLAWEAGDDEPLRARTTVEGGRI 944 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW------PAKEYKNLLLSITRLLENP 835 RG+++HKL++ + T + S + + + L + + + P Sbjct: 945 RGILLHKLMEELVTGELVESSEDAASRAAQLRDQLFSVSPSTTVDAEELAATALKTIRLP 1004 Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI-FEYKTHHHVPQEIE 894 + +EV + + D +I GR D I+ ++ + F++K+ Sbjct: 1005 ELKP-FRSGLMAEVPIHA-VAAAGADHLIVGRADAIARTEDGDTVAFDWKSDAAPKDTD- 1061 Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + QL+ Y + ++Y++ ++ + Sbjct: 1062 --RSAYRQQLAQYLYAIGAR------KGAVVYMTSGRLDWV 1094 >gi|310644241|ref|YP_003949000.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2] gi|309249192|gb|ADO58759.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2] Length = 774 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 114/718 (15%), Positives = 221/718 (30%), Gaps = 133/718 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + + + + L Sbjct: 33 GAGSGKTRVLTHRIAYLIATRKTAPWGILAITFTNKAAREMQDRVSKLIGPQGRDVWVST 92 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110 F + L + I + L + K Q Sbjct: 93 FHSMCVRILRRDIERIGFTSNFSILDSTDQLSVIRSCMKDLNIDTKKFEPKAVQSMMSTA 152 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T +M++ + + + Y++ K N LDF+DLI+ T L K+ Sbjct: 153 KNELVTPEMYERKIGDYFEGIVAKVYTKYQQRLKNNNSLDFDDLIMATIQLFKE---VPE 209 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ + + L + L VGD QSIY Sbjct: 210 VLDFYQKKFQYIHVDEYQDTNRAQYMLCKMLAD----------KHHRLCVVGDSDQSIYR 259 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L + + I L ++RST++IL ++V + Sbjct: 260 WRGADISNILNFEEDYPE--------ARTILLEQNYRSTSNILNAANEVIGQNTGRKPKK 311 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW D + + + + + + Sbjct: 312 ---------------------LW------TDKEGGAKIKVYRADSEHDEGY--------F 336 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 IA I I +L R + ++ + I Sbjct: 337 IASEIHKNIKAGK----------TYSHHAILYRTNAQSRVVEEIL----IKSDIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKDL+A R + + +DD+S + ++ P + + + K+ E Sbjct: 383 GIKFYDRKEIKDLLAYLRLLSNPDDDISLIRIINVPKRSIGDTTVGKLQAAAAERGVSIF 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + FA + I L + + S + +L + R + + Sbjct: 443 RVLQVVDDLGFAGRTRNALVEFYDMIEGLSRMVDYLSVTELTEKMLETTQYRLELQNENT 502 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKR--AHSANHNEVRIMT 576 E ++ +DEFL+ T+ E+ SL +++L + V +MT Sbjct: 503 LESRSRLENIDEFLSVTMEFEKGTEDKSLVSFLTDLALIADIDSMNDDEEEQSDAVVLMT 562 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VF+V VF H + Sbjct: 563 MHSAKGLEFPIVFIVGMEEGVFPHSRAFLDNEELEEERRL-------------------- 602 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 YVG+TRA +QL + + ++ + + + Sbjct: 603 --------------AYVGITRAEEQLFLTCAQMRTLFGRTTANPPSRFLEEIPDELKE 646 >gi|307244600|ref|ZP_07526704.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus stomatis DSM 17678] gi|306491981|gb|EFM64030.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus stomatis DSM 17678] Length = 787 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 112/654 (17%), Positives = 221/654 (33%), Gaps = 129/654 (19%) Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 +S LT K + + + + + ++D+ ++ + + + + Sbjct: 112 ASDQLTLVKDCLKELNLDDKKFEPKSIISYISSAKDKLQTPKE---FAREAEGDIWLSKI 168 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A+ + A Y++ +N LDF+DLI+ T +LL+ + + + +I++DE QDTS Sbjct: 169 AE-VYAIYQDRLLRNSALDFDDLIVKTVELLQSNED---VLNFYRGKFKYIMVDEYQDTS 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+++I+ L + + + VGD+ QSIY + GA+ + +L ++ Sbjct: 225 RAQYQLIKMLAQ----------GHQNICVVGDDDQSIYGWRGADIRNILEFEKDYDDVF- 273 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +++L ++RST IL + + + + S + GQ ++ Sbjct: 274 -------VVKLEQNYRSTQPILDTANHLIANNVERKKKRLWSDK-------KEGQPVKIK 319 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L + A +A I +++ + Sbjct: 320 LLR----------------------------NEVEEASYVAEEI---------YNHSMET 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 +D VL R I N ++I + IKDL+A R I+ Sbjct: 343 GRSFEDYAVLYRANAQARAIEDAL----NRFQIPYSIYGGTKFYERKEIKDLLAYLRIIV 398 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQ 482 + +DD+S ++ P I K+ + + + Sbjct: 399 NPQDDISVKRVINVPRRGIGLRTIEKLEDRASLMKESVYSVILDVDNNSDISTKAKKSIN 458 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-------------SRFGNEVIDVL 529 + I SP +L + + + ID L Sbjct: 459 EFLDLISIFRTFVDAYSPSQLVEKVLDMTGYIHELEEIVAKNQNLQNGKAEDAQDRIDNL 518 Query: 530 DEFLNFTLRNEQNS--YSSLQELISELEQYPPTIKRAHSANHN--EVRIMTVHTAKGLES 585 EF++ + E + + L + L + A +V +MT+H++KGLE Sbjct: 519 REFISIAIEYENSDLNNEEEKNLENFLATISLSSDVADEEEEGLSKVSMMTMHSSKGLEF 578 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVVF+V +F ++ I + S E Sbjct: 579 PVVFIVGMEENIFP--------------------------------IARAISSMSDSDIE 606 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 E RL YVG+TRA L + + + K++ + + ++ Sbjct: 607 EERRLCYVGITRAMRDLYLTHVATRTLYGKTSVNMKSRFLGELPEETTQILDSP 660 >gi|126661311|ref|ZP_01732380.1| DNA helicase II [Cyanothece sp. CCY0110] gi|126617407|gb|EAZ88207.1| DNA helicase II [Cyanothece sp. CCY0110] Length = 772 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 108/562 (19%), Positives = 188/562 (33%), Gaps = 99/562 (17%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 +++ A + + Y+ N LDF+DLI+ L ++ + I + HI Sbjct: 199 ENSYAKGRIIAEVYEEYQNQLAANNALDFDDLILIPVRLFQQNES---ILGYWHSQFKHI 255 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 L+DE QDT+ IQ+++I+ LT + K+ + R++F VGD QSIYSF A+ +L Sbjct: 256 LVDEYQDTNQIQYQLIQLLTTNAEPQKSEWNWQNRSIFVVGDADQSIYSFRMADFTILLN 315 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + + ++++L ++RST IL +K+ T Sbjct: 316 FQSDFGDGLPDEDTR-TMVKLEENYRSTETILQAANKLIENNSQRIDKILRPTR------ 368 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 ++ D + + I ++ T Sbjct: 369 ----------------------GEGEEIYCYKAEDERIESD-------FVISKIQELVET 399 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + + D +L R + I F D IK Sbjct: 400 NP--------ELNWGDFALLYRVNAQSRPFEDNL----IRNNIPYTIVGGFKFYDRQEIK 447 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------ 472 D +A R I++ D +S + ++ SP + + + E E ++E I Sbjct: 448 DSLAYLRLIVNPFDTVSLLRVINSPRRGIGKTSVDSLLKAAQELEIPLWEIISDETSVKT 507 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529 A I +L + S + F ++ + E + + Sbjct: 508 LAGRAAKSVNQFATMIKKLQEQLKDFSATELFDQVMEGSGYVDDLKQKGTEEADNRLENI 567 Query: 530 DEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 E + + E + +SLQ ++ +V +MT+H+AKGLE P+V Sbjct: 568 YELYSAIAQYQEDSEDTSLQGYLTNASLASDLDN--LDEGQEKVSLMTLHSAKGLEFPIV 625 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FLV H + EE Sbjct: 626 FLVGLEQGTLPHIRSLNDPLS----------------------------------LEEER 651 Query: 649 RLLYVGMTRASDQLIICKHSNT 670 RL YVG+TRA +QL I Sbjct: 652 RLCYVGITRAQEQLFITHARER 673 >gi|259047692|ref|ZP_05738093.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC 49175] gi|259035883|gb|EEW37138.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC 49175] Length = 773 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 132/813 (16%), Positives = 265/813 (32%), Gaps = 137/813 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L +V N + ++ L Sbjct: 31 GAGSGKTRVLTHRMAYILAEEEVQPWNILAITFTNKAASEMKERVSALVGEQAGDMWVST 90 Query: 66 FSLLSSFFLTQKFT---PQKNII---TQEINKKSPDLKEKLKKSQDEFIK---------I 110 F + L + K+ + + + +KL D+F Sbjct: 91 FHSMCVRILRRDCERIGLAKSFTIIDSGDQLSAMKRIMQKLNIDSDKFDARGILASISNA 150 Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ F + F T A + YE K+KN +DF+DLI+ T L K+ Sbjct: 151 KNNFEDAETFAKTHANFMDQITAKCYVEYEAEKRKNMTVDFDDLIMLTVKLFKEHPD--- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + Q+ ++I +DE QDT+ Q+ +++ L + F + + VGD QSIY Sbjct: 208 VLAYYQQKFHYIHVDEYQDTNHAQYLLVQLLADKF----------KNICVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + ++ L ++RST IL ++V +N + Sbjct: 258 WRGADMENILSFEHDYPQ--------AKVVLLEQNYRSTKTILKAANQVIENNQNRKPK- 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + R Sbjct: 309 --------------------ELW-------TENEAGDKITYYCAASGYEES-------RY 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + TI M+ D VL R + + + Sbjct: 335 VMRTIQKMVN---------FDGYDYSDFAVLYRSNAQSRTLEEDL----LKANMPFKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 + + IKDL+A R +++ DD SF ++ +P I K+ + ++ Sbjct: 382 GQRFYERMEIKDLLAYLRLLVNPTDDFSFRRVVNAPKRGIGGKSIEKLEDFAQMHGFSLL 441 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + + K I +L + +F S D ++ Sbjct: 442 EASAETTLNGISGKAGKGLADFAKLISDLTKMQEFVSLTDLIEEVMIKSGYIASLEQAHT 501 Query: 523 NEVI---DVLDEFLNFTLRNEQNSYSS------LQELISELEQYPPTIKRAHSANHNEVR 573 E D + EFL+ E+ + S L + +++L ++ + +++ Sbjct: 502 MEADARIDNMREFLSVAKEFEEKRFDSEAEESALVQFLTDLSLV-TDMENEEETSASQIT 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEDGIFPSARTL----------------------------- 591 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 ++ +EE RL YVG+TRA +L + + + K+ + + Sbjct: 592 ------QEGDEEEERRLAYVGITRAEKKLFMTRAYSRLLYGKTQHYRESRFMQEIDDKLL 645 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + + +++S + + + S + + R + + QK L + + Sbjct: 646 QKEGEMISDSYYSSSFYSEKPSYNRGSSATGGRLFDRYRNTNAQKNEGYLHKKSHSSASI 705 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786 + + + ++ + RG ++ Sbjct: 706 QRVEKQTPTSASSDGWTVGMKVSHKKWGRGTVV 738 >gi|290893619|ref|ZP_06556601.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071] gi|290556821|gb|EFD90353.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071] Length = 1051 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 122/694 (17%), Positives = 251/694 (36%), Gaps = 54/694 (7%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67 I +D+ + + + + E P L + Q L + + + + Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284 Query: 68 LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123 + + + T + K+ + +++ ++ KK R+ N + Sbjct: 285 SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344 Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 L K A++ E K++ VLDF DL +L D ++ + ++ Sbjct: 345 KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQDYQKQFKE 404 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +LIDE QDT+++Q ++R +T N + LF VGD KQSIY F AEP + Sbjct: 405 VLIDEYQDTNMVQETILRLVT-------NPRETQGNLFMVGDVKQSIYRFRLAEPTLFMT 457 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297 + + Q+ + G I+L +FRS ++L + +F + + D+ + Sbjct: 458 KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514 Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 ++ +L + D++ + S + + +R IA I M Sbjct: 515 GANFPETNAMATELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566 Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 I + K R IQ +DI++L R P + + I N+ Sbjct: 567 IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470 + + ++AL + + + D+ +L+SP+ +E+++ +I + + + + Y Sbjct: 623 ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLAYK 682 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 + K ++ ++ ++ + I + G + L Sbjct: 683 DITVSETADKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 + + E+ S+ L + +E+ + + VR+MT+H +KGLE Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVV + + K + + + + + Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 E R+LYV +TRA ++LI+ + N Sbjct: 863 AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNW 896 >gi|160893045|ref|ZP_02073833.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50] gi|156865128|gb|EDO58559.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50] Length = 781 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 110/602 (18%), Positives = 202/602 (33%), Gaps = 118/602 (19%) Query: 103 SQDEFIKIRDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159 E ++R+ + + A T + + Y + +K DF+DLI +L Sbjct: 136 FMAEISNAKERYISPDQYAKMNATDFVKTQTATVYSEYMKRLRKFNAFDFDDLIYKVVEL 195 Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 + + +I++DE QDT+ IQ+ +++ L + R L V Sbjct: 196 FEHNPD---VLELYQDRFRYIMVDEYQDTNHIQFLMVKQLASKY----------RNLCVV 242 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD+ QSIY F GA +L ++ +++L ++RS +IL + V Sbjct: 243 GDDDQSIYKFRGANITNILNFEKEYP--------DAKVVKLEQNYRSCGNILAAANAVIK 294 Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 E + + LW Q + ++ + D + Sbjct: 295 HNEGRKDKA---------------------LW-------TDQGDGEKLVFNQSEDEYME- 325 Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 A R+ I + Q KDI +L R + + Sbjct: 326 ------ADRVVNEIIRLTANG----------AQYKDIALLYRTNAQSR----ILGEKLVM 365 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT- 458 I + IKD+MA + + + DD ++ P + + K+ Sbjct: 366 RGIPHRVYGGQNFYERKEIKDVMAYLKVVNNSTDDTYLRRIINVPKRGIGDATVDKVAAF 425 Query: 459 QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKK 512 T+ E +Q ++K ++ I I + F IL Sbjct: 426 AAANDMTLMEAMQIIEQIPGLQRSVAKISGFVELIDGFREIIEEQEPLSTLFDRILEDTG 485 Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSAN 568 + I+ +E ++ +DE N ++ E + ++L + + ++ T K + + Sbjct: 486 YEDELIAEHTDESMARLENIDELRNRVVQFETDYEEATLADFLEDIALVSETDKMSD--D 543 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N V++MT+H +KGLE P VFL ++F Sbjct: 544 DNMVKLMTIHGSKGLEFPYVFLCGMEERIFPS---------------------------- 575 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 + I + EE RL YVG+TRA +L + N N + + Sbjct: 576 ----AMAINSDDEDALEEERRLCYVGITRAMKKLYLSCARNRMLHGSRNCNDISRFIKEI 631 Query: 689 FH 690 Sbjct: 632 PP 633 >gi|323463999|gb|ADX76152.1| ATP-dependent DNA helicase PcrA [Staphylococcus pseudintermedius ED99] Length = 731 Score = 308 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 117/718 (16%), Positives = 230/718 (32%), Gaps = 128/718 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L VS N + ++ Q L Sbjct: 28 GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVQALVGEEAEVIWMST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + ++N + + +K+ LK+ E K+ Sbjct: 88 FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKRENIDPKKYEPRIFIGEISKL 147 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T ++ + + Y++ +N LDF+DLI+ T L ++ Sbjct: 148 KNDLLTPAKAEAEADDFYSRMVATVYKGYQQQLVRNQALDFDDLIMTTIRLFER---VPD 204 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ ++ L + F + L VGD QSIY Sbjct: 205 VLDFYQNKFQYIHVDEYQDTNTAQYTLVNMLAQKF----------KNLCVVGDSDQSIYG 254 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA +L ++ I L ++RST IL ++V + Sbjct: 255 WRGANIHNILSFEKDYPN--------ARTIFLEQNYRSTKTILQAANEVIRHNTERKPKG 306 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + Sbjct: 307 ---------------------LW-------TANQQGEKIHYYEAMSERDET-------EY 331 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + KD+ VL R + ++ I V Sbjct: 332 VVREIFKQQKKGK----------RYKDMAVLYRTNAQSRVLEETF----LKSNIPYVMVG 377 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKDL++ R I + DD+S ++ P + KI T++ Sbjct: 378 GQKFYDRKEIKDLLSYLRLIANSADDISLQRIINVPKRGIGPSSVEKIATYAVDHELTMF 437 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + + + L+ +F + +L R+ Sbjct: 438 DALAEVDFIGLSKKVTQAAAEFYQLMSNLMQEQEFLEVSEIVDEVLEKSGYREMLEREQS 497 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ +DEF++ + E+N+ Q LI+ L + + V +MT+H+ Sbjct: 498 IESRSRLENIDEFMSVPVDYEKNTPLEEQSLINFLTDLSLVADVDGANLEDGVTLMTMHS 557 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ +F H I+ Sbjct: 558 AKGLEFPIVFIIGMEESIFPHIR--------------------------------AIQSE 585 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE R+ YV +TRA ++L + ++ + + + + + + Sbjct: 586 SDHEMEEERRISYVAITRAEEELYLSHATSRTLFGRPQSNERSRFLNEIPEELLDLPE 643 >gi|169335318|ref|ZP_02862511.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM 17244] gi|169258056|gb|EDS72022.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM 17244] Length = 741 Score = 308 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 113/699 (16%), Positives = 226/699 (32%), Gaps = 139/699 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ +I++ + + + ++ ++ + Sbjct: 27 GAGSGKTRTIIHRIAYIIENGYAKPWEILALTFTNKAAGEMRERIDSMGIPFTSDIWMGT 86 Query: 66 FSLLSS---------FFLTQKFTPQKNIITQEINK-------------KSPDLKEKLKKS 103 F + + T F+ + T+ + K +K ++ Sbjct: 87 FHSICARILRIEGHNLGFTSNFSIYDDDDTKRVVKSILKDLDISDKEFPVEGVKSQISLL 146 Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 ++ D + F+ +A+ + A Y++ + +DF+DL++N N L K Sbjct: 147 KNNLETSDDYLEEHDDFEGGYTEARIAQ-IYAEYQKRLLSSNAMDFDDLLLNMNILFAK- 204 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + K +IL+DE QDT+L Q+ ++ L ED R + GD+ Sbjct: 205 --CPEVLNKYKNRFKYILVDEYQDTNLSQYAIVSKLAED----------HRNICVCGDDD 252 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA + +L + + ++I L ++R T +IL + V + Sbjct: 253 QSIYGWRGASIRNILEFEEDFE--------DAAVIRLEQNYRCTKNILNAANGVIEHNQR 304 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + ++ + + L + S Sbjct: 305 RMGKTLF----------------------------TDNDEGEKIKYLNANSDLEESS--- 333 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 I+ I + + I DI +L R + ++ I Sbjct: 334 ----LISREIFCL---------NEYHGIPYSDIAILYRTNAQSRMLEEGL----MRRNIP 376 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462 D + IKD++A + I++ +DDL+ + ++ +P + KI + Sbjct: 377 YQIVAGTKFYDRMEIKDILAYLKLIVNPQDDLALIRVINTPKRGIGPASVEKIKDYAFMK 436 Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 ++YE I+ + K + I E+ + + D + + Sbjct: 437 GTSMYEVIKHIDSSPLFKGAIKEKLMNFRDTIEEIRRLPENNGLMDIVINTIHLSGYEEM 496 Query: 517 FIS---RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEV 572 + ++ LDE +N E N +L+ + + ++V Sbjct: 497 LKEGKVENASNRLENLDELVNAAGDFESNEEENTLEAFLENAALVAGVDSYD--EDSSKV 554 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE +VF+ +F Sbjct: 555 LLMTLHNAKGLEFNIVFMPGMEENLFP--------------------------------- 581 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + S EE RL YVG+TRA QL + + Sbjct: 582 -TYRAVNEDSEMEEERRLCYVGITRARKQLYMSSAESRR 619 >gi|116493117|ref|YP_804852.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC 25745] gi|116103267|gb|ABJ68410.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC 25745] Length = 757 Score = 308 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 114/700 (16%), Positives = 222/700 (31%), Gaps = 145/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ +L + Sbjct: 30 GAGSGKTRVLTHRVAYLIEEKGVNPWNVLAITFTNKAAREMRERVTSLLGDEAAEIWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKI 110 F L F + Q+ ++ + + D K+ + Sbjct: 90 FHALCVRILRRNIDQLGYNRAFSIADPSEQRTLVKHILADLNYDPKKFDPRSVLGTISNA 149 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T ++ ++ + + Y+ + N LDF+DLI+ T +L +K + Sbjct: 150 KNDLKTPLTYRENASTPYEQVVADIYEEYQRRLENNQALDFDDLIMKTIELFQKNPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q++++ L + F R + VGD QSIY Sbjct: 208 -LSFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKHF----------RNICVVGDSDQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + ++ + + L ++RST +IL + V + Sbjct: 257 WRGADMQNIMNFESDYP--------DSKTVMLEQNYRSTQNILNAANDVIENNVERKPK- 307 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 QLW ++ S+ + + A Sbjct: 308 --------------------QLW-------TDNDEGEKISYYRGQTGIDE-------AHF 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I I + D +L R + +I I + Sbjct: 334 IVQKIREQIKE---------HNLNYGDFAILYRTNAQSRVIEDTF----VKSNIPYLMVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467 D I+D+++ I +++D +SF ++ P I K+ E Sbjct: 381 GHKFYDRKEIRDVLSYLTLIANEDDSMSFERVINEPKRGIGSTSIAKLQAFADENNWSLL 440 Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + ++ + + K I L +F + + +L R Sbjct: 441 KAARSVQIANGISSRARNAIEDFAKMIDALRKSGEFLNITELTEAVLEQTGYRAALEKSR 500 Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSS-------------LQELISELEQYPPTIKRAH 565 E ++ +DEFL T + + + + L + +++L Sbjct: 501 TMESEARLENIDEFLTVTKQFDDKNEAEGNEIADENGDNIQLVDFLADLALVSDQDN--V 558 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + V +MT+H AKGLE P+VFLV +F Sbjct: 559 EEEPSGVTLMTLHAAKGLEFPIVFLVGMEDGIFPLS------------------------ 594 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + EE RL YVG+TRA +L I Sbjct: 595 ----------RAMMDQEQLEEERRLAYVGITRARQKLYIT 624 >gi|319947280|ref|ZP_08021513.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC 700641] gi|319746522|gb|EFV98782.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC 700641] Length = 767 Score = 308 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 99/592 (16%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 172 QIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPD---VLTYYQQKFQYIHVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V N + + Sbjct: 277 ------DAKVVLLEENYRSTKTILQAANDVIKNNRNRRPKN------------------- 311 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 312 --LW-------TQNADGEEIVYYRANDEQDE-------AVFVAKTIEELSREA------- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +D VL R + I I I+D++A Sbjct: 349 --GYKHRDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVIAYLNL 402 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + + ++ + Sbjct: 403 IANLSDNISFERIINEPKRGIGPGTVDKIRDFAQMQGTSLLDASANIMLSGIKGKAAQAI 462 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E I+ + EFL+ T Sbjct: 463 WDFANLILDLREKLDQMTITELVEEVLDKTGYMTALTNQGNLESQARIENIQEFLSVTKN 522 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 +++ +L +++L T + +EV +MT+H AKGLE PVVFL Sbjct: 523 FDENGDSVEDESGVDTLSRFLNDLALIADTD--DGAQETSEVTLMTLHAAKGLEFPVVFL 580 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 581 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 606 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ +++ + + + + + Sbjct: 607 AYVGITRAEKVLFLTNANSRLLFGRTSYNRPTRFINEISSDLLTYQGLARPA 658 >gi|312867706|ref|ZP_07727912.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405] gi|311096769|gb|EFQ55007.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405] Length = 761 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 99/591 (16%), Positives = 191/591 (32%), Gaps = 122/591 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + + + Sbjct: 271 ------DAKVVLLEENYRSTKTILQAANDVIKNNRHRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------AVFVAKTIEELSREA------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +D VL R + I I I+D++A Sbjct: 343 --GYKHRDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVDKIRDFAQMQESSLLDASANIMLSGIKGKAAQAI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E I+ + EFL+ T Sbjct: 457 WDFANLILDLRERLDQLTITELVEEVLDKTGYMTALTNQGNLESQARIENIQEFLSVTKN 516 Query: 539 NEQNSY--------SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 ++N +L +++L T + +EV +MT+H AKGLE PVVFL Sbjct: 517 FDENGETVEDESGVETLSRFLNDLALIADTD--DGAQETSEVTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 YVG+TRA L + ++ +++ + + + + + Sbjct: 601 AYVGITRAEKVLFLTNANSRLLFGRTSYNRPTRFINEISSDLLTYQGLARP 651 >gi|225174502|ref|ZP_03728501.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] gi|225170287|gb|EEG79082.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] Length = 1069 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 147/852 (17%), Positives = 271/852 (31%), Gaps = 89/852 (10%) Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFK-STLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 + ++++ D F + + + ++ L AH++ +++ ++F+DL Sbjct: 270 KETAKQIQAFFDHFRESDIQPTLRQWWEYRYPHLLEFLLPAVAHFQTVRQRENQVNFQDL 329 Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT--- 209 ++ T LLK + +R H+L+DE QDT IQ E++ LT + Sbjct: 330 LMRTAALLKNN---SEVRGYFQNRYTHLLVDEFQDTDPIQAEIMMFLTGCDLTETDWTKI 386 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 P LF VGD KQSIY F A+ R K + +K ++ L +FRS + Sbjct: 387 SPKPGALFVVGDPKQSIYRFRRADIDTYNRVKDLIKK------ANGEVLHLTANFRSLTE 440 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 I+ V+ VF + + + R + Sbjct: 441 IIDWVNPVFDDLLTQSVAPYQADA-VPMQPVRKNHP--------------DNTGGIFKIE 485 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIF-------SNGKKRVIQAKDILVLVRK 382 QE+ S A RIA I + + G D L+LVR Sbjct: 486 IPGITYHKQETIVSEDAARIAAWIRTCLDGNVTLTRTAEEEQAGLSATPSPNDFLILVRY 545 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 + L Y I + + +++L L + + ++ + V L+ Sbjct: 546 KDYMSLYARALEE----YNIPFSLSGASDIAASRELQELHLLLQALADPDNPVPLVATLR 601 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 F S++D++++ + + F + + + + + P Sbjct: 602 GLFFGVSDEDLYRLKKANGRFCLLSPIPDD---PTVESFIPIWEKLQQYRAWTRELPPSS 658 Query: 503 FFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNS----YSSLQELISELEQY 557 I+ G + + L EQN +++ + LE Sbjct: 659 AIENIISDLGLIPYALAGSMGKGRTGYILQLLELIRSREQNGQTTFPATVDFISELLEAG 718 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + VRIM +H AKGLE+PVVFL + G V +H+ + G Sbjct: 719 MEEELDVEAGIAPAVRIMNLHKAKGLEAPVVFLANPGKTV---TREPNLHVSRTSGTPKG 775 Query: 618 IPIWIPQSKSRNNIVSD------LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + + I + Q E RLLYV TRA + LII + + Sbjct: 776 YLQISKRENYASEIFAQPTNWEVHQAEETLYQQAEEARLLYVAATRAKNILIISTYPAKA 835 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731 ++ + SI + + T + E Sbjct: 836 DKSP------------------WHPLEEFMESIPTLDIPQVQLPAKEEPQTQITPETLQA 877 Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 Q+ ++ +P D + + G +IH L+ Sbjct: 878 VNQQIQENIARVITPTYTRCT--------VTDLTKDAQAPERRHTGRGMSWGNVIHNALE 929 Query: 792 VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851 + + I + + E + +L + + E P S SE Sbjct: 930 ALVKYENIDLEALIPQLLQQEGRA--EDEKEEVLTLLQEITETPFWQRVQSA---SEKHT 984 Query: 852 SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKI 910 + D ++G ID + + +YKT + + + QL Y K Sbjct: 985 EIPFGIYENDHYLTGTIDLAFREAEGWVLVDYKTDTVRDDVHRQELVNYYTPQLKEYAKR 1044 Query: 911 LKDSYPNKSLVC 922 ++ + + Sbjct: 1045 WEEM-TGERVKA 1055 >gi|269123730|ref|YP_003306307.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112] gi|268315056|gb|ACZ01430.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112] Length = 735 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 122/684 (17%), Positives = 230/684 (33%), Gaps = 137/684 (20%) Query: 2 KNRFGL-----SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56 +N L + E E + + +S + + + T + I Sbjct: 52 RNILALTFTNKAAKEMKERVETLVGDNNEILISTFHSFAVRLLRTYSERI--------GY 103 Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI-RDRFN 115 + I + QK +K + +Q ++KK + ++ ++ + N Sbjct: 104 TNNFNIYDNND--------QKSIIKKILKSQGLDKKYKE--SQIISKISRLKELGLNYTN 153 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + L K + Y+E +K+ +DF DL++N LL ++ KI Sbjct: 154 LGQELDMNLPFNREFKEIFREYQEKLEKSNAMDFSDLLVNAKALLDDE----YVLDKIQN 209 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 +ILIDE QDT+ IQ+++++ + + + + + VGDE QSIY+F GA + Sbjct: 210 RYIYILIDEYQDTNEIQYQIVKKIAKKY----------KNICVVGDEDQSIYAFRGANIR 259 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 +L ++ + I+L ++RST IL + V ++++G Sbjct: 260 NILNFEKDYPN--------ANTIKLEQNYRSTQTILDAANSVIRNNKSSKGKK------- 304 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 LW ++ + + + A I+ I+ Sbjct: 305 --------------LW-------SDNNKGEKIGIYTAINVEDE-------ATFISDKINE 336 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + ++ + KD +L R + I KI D Sbjct: 337 L---------KIRKDKKYKDFTILYRTNAQSRAIEESL----IQNKIPYKIYGGLRFFDR 383 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA 474 IKDL++ I + +DDLSF ++ P + I + ++++ I + Sbjct: 384 KEIKDLISYLLLINNPKDDLSFERVINFPKRSIGPKTIEVLTHIATKNQTSLFDAILQVE 443 Query: 475 NCGI----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529 N K I++ I + + + ++ I+ + Sbjct: 444 NEISSSAIKKLLSFRDLINKYIIAKEDMTTSEILKDLMDDIDYNSALDSYDNKENRIENI 503 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVV 588 E +N E+ + L LE N V++MT+H +KGLE V Sbjct: 504 QELINSIATIEEET--GFLSLPEYLENVALNSPSDNLVEEENFVKLMTIHASKGLEFNTV 561 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FLV +F ++ M + EE Sbjct: 562 FLVGVEEGLFPNEDSNFM----------------------------------EDELEEER 587 Query: 649 RLLYVGMTRASDQLIICKHSNTSN 672 R+ YV +TRA ++L I Sbjct: 588 RIFYVAITRAEEELYITHSLERKT 611 >gi|301301162|ref|ZP_07207319.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851291|gb|EFK79018.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1248 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 118/630 (18%), Positives = 220/630 (34%), Gaps = 46/630 (7%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L QK I + + S + E L + + T K + + K Sbjct: 294 LDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVETLSEVVKEF 353 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + + + K++ VLDF DL T +L ++ ++ + I++DE QDT+ +Q Sbjct: 354 GSEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQ 413 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ ++ H +P +F VGD KQSIY F A+P L++ + N Sbjct: 414 ETILTTIA---------HKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATDDNND- 463 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSR--IGQVGTV 308 I L +FRS ++ + +FS + + ++ D + + + Sbjct: 464 ---ERIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYLEETPVKA 520 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 ++ + + + + D+ Q A I ++ + K+ Sbjct: 521 EILVYESEDSSQESDDEPVNEDFSIDNKAQGQIV-----MTAKRIKELVENGEKIYDKKQ 575 Query: 369 ---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 R I+ +DI +L RK+ + + + D +K +M+ Sbjct: 576 GAIRPIEYRDIAILAPTRKN----NLILTEEFKRLGVPIFVPDAQNYFQTTELKIMMSFL 631 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----------EYIQKFA 474 + I + D+ V +L+SP+ E+++ + + E FA Sbjct: 632 QIIDNPYQDIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFA 691 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFL 533 K +K + E ++AQ I G + L Sbjct: 692 QSLYEKIAIFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALY 751 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVF 589 E+ S+ L + + + + K A + + V +MT+H +KGLE P+VF Sbjct: 752 ERAAEYEEMSFKGLFQFVRFINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPIVF 811 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+D + K + + K+ + + K E R Sbjct: 812 LLDATHKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGEQALKKLAAEQMR 871 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 LLYV +TRA QL I +E S Sbjct: 872 LLYVALTRAEQQLFIVGSYKDKSEALSKWE 901 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 21/303 (6%) Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN---SINKD 707 Y+G ++ + + E + + E + +++ + I Sbjct: 949 AYIGELPVKFEVKFYSNQDLRGENITLDENSESWLKQQLKKIEEQEPLEINDKQYRIIDK 1008 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 + + + T + +K+ D+ I P +N Sbjct: 1009 ILQSKYPNESLTKTTAYQAVSDLKRAFDDPDNNMMQSLEIDWQDQAPQGINRYVQGELKL 1068 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLL 825 + G H LLQ + E + + ++ + P + L Sbjct: 1069 PKFMTTKVKVSPAQVGTATHLLLQKLPLDEEVTLEELMQLLSQLVEDKLITPEVAKEINL 1128 Query: 826 LSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP----------KKDIIISGRIDQISI 873 I + + T + E+ + I ++ I++ G ID + Sbjct: 1129 DQIKNFYASDLGKTVLENKDKVKRELPFAMIIPAGRLFSNVDNDVEQPILVHGIIDGLIE 1188 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKV 932 + IF+YKT HH + + + QL++Y ++ NK + +IY + K Sbjct: 1189 LDDEVIIFDYKTDHHT--SEDKLIENYRGQLNLYAMAVESML-NKKVSQKIIYSLDLGKS 1245 Query: 933 FII 935 ++ Sbjct: 1246 IVL 1248 >gi|329911425|ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] gi|327545902|gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] Length = 1090 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 156/921 (16%), Positives = 311/921 (33%), Gaps = 118/921 (12%) Query: 35 VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI----- 89 ++ + G ++A ++ A + F L F+ K + N + Sbjct: 255 MAWLLGQGAKRNQERAVAIETALTAGASLDGFQQLFLQFMDDKGKVRGNDHRRGKLLAAN 314 Query: 90 -----NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 + + + + ++++ R + A T+ A Y+ K + Sbjct: 315 EINLGDNSADSFETEFGTLAAALMQLQRRSTETTVLALNAALFTVGAAYLAVYQAVKAEQ 374 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 V DF DL LL + +A+++ ++D HIL+DE QDT+ +QW ++R+ + Sbjct: 375 RVFDFADLEWQAYRLLGNEEHAAYLQSRLDSRYRHILLDEFQDTNPLQWSIVRA----WL 430 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 S+ ++F VGD KQSIY F AEP+ L + + Q +I++ + Sbjct: 431 AAYGDDSAAPSVFIVGDPKQSIYRFRRAEPRVFLAARAMLAA------QGAAILQTNQTR 484 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 R+ ++ +++ F +++ + G + VV + P Sbjct: 485 RNAPVLIELLNDSFGPNPIFSA-----------QTTLSARPGMIWRLPLVVQSASTVVAP 533 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 + +E + + + + + D+++LV+KR Sbjct: 534 AGLVLRDPLVTPLEEDEDARRLDEGRAVAVAIRRARLELAACNGTLPRWSDVMLLVKKRA 593 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 R I + R L + L I DL+AL F+++ D+ + +LKSP Sbjct: 594 HLGAYETALRE----AGIPFASDKRGGLLESLEIADLIALLTFLITPGDNRALAHVLKSP 649 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 + ++ D+ ++ +H+ + ++ + + + + IA HD Sbjct: 650 IIGAADTDLIRL--AQHDGGSWWQRLLALEDV----LPDATMQLQHWLMIAPGLPVHDLL 703 Query: 505 TLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560 IL + ++ + +VI L+ F L + Y SL + I L Sbjct: 704 DRILHEGQLVARYAASVPALLRGQVIGNLEAFTALALNLDAGRYPSLPKFIDALRALQNA 763 Query: 561 IKRAHSANH------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + VRI+T+H+AKGLE+ +V L+D + + P Sbjct: 764 AHNDAPDEADIDAALDAVRILTIHSAKGLEADIVVLLDANHSEPARDDAGILCEWPQDAA 823 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 P + R L + +E LLYV MTRA LI+ + N + Sbjct: 824 APTHFSAFGRVAERGAARDALFADEDRFRVQEDWNLLYVAMTRARQCLIVSGVAGKRNAQ 883 Query: 675 --KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + +WY + ++ + +SI D P E E+ + Sbjct: 884 ADGTVDGSWYARLLEAPEMLLEAESFGDADSIESDFHWPVFNPAVIPPAAVPEVAESTPE 943 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792 + + G+ +H LL+ Sbjct: 944 IDE-----------------------------------------------GIALHGLLER 956 Query: 793 I----FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 + + + I + + +L P ++ Sbjct: 957 LTQHRDGVLPVPDASVIARWLDC-----SPACAGVVRAQALTILAAPDLSQFFDPHQI-- 1009 Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 V +I ++ R D++ ++I +YK + + + AQL+ Y Sbjct: 1010 VFAHNEIELLHDGELL--RFDRLVQLPDALWILDYK-----RRLLASERADYAAQLARYR 1062 Query: 909 KILKDSYPNKSLVCLLIYVSE 929 + Y +++ LI V Sbjct: 1063 RAALAVYAGQTIRTALILVDG 1083 >gi|225568813|ref|ZP_03777838.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM 15053] gi|225162312|gb|EEG74931.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM 15053] Length = 743 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 107/616 (17%), Positives = 195/616 (31%), Gaps = 117/616 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + YE+ + N LDF+DL++ T L + A I + +I++DE QDT+ Sbjct: 170 AQVYEEYEKQLRANNALDFDDLLVKTVQLFQT---QADILDYYQERFRYIMVDEYQDTNT 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+E+IR L + R L VGD+ QSIY F GA K +L +++ + Sbjct: 227 VQFELIRILASKY----------RNLCVVGDDDQSIYKFRGANIKNILNFEQVYE----- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST++IL + V + + L Sbjct: 272 ---DAKVIKLEQNYRSTSNILNAANAVIRNNYGRKDKT---------------------L 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + + SA A I I + + Sbjct: 308 W-------TDNGEGDKIHFRQF-------DSAYDEAEYIVGDIREQVDSG---------G 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D +L R + + I IKDL++ + + + Sbjct: 345 CTYNDNAILYRTNAQSRMFEEKF----VTANIPYKVVGGVNFYARREIKDLLSYLKTVDN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQHV 484 +DDL+ ++ P I ++ YE + G S+ + Sbjct: 401 GQDDLAVRRIVNVPKRGIGLTSINRVQEYASSRGIGFYEALCAVDLIPNIGRGASRLESF 460 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + I A+ S D I+ + + E + +DE ++ E+ Sbjct: 461 VALIEHFKTDAREMSISDLMQEIIDETGYIESLQAEDSIEAETRIENIDELMSKIAAYEE 520 Query: 542 -----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 N +L + E+ + + + V +MT+H+AKGLE P V+L Sbjct: 521 ACEESNEPVTLSGFLEEVALVADID--SLDESSDYVVLMTLHSAKGLEFPRVYLAGLEDG 578 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F I EE RL YVG+T Sbjct: 579 IFPSYMT--------------------------------ITADDPEEVEEERRLCYVGIT 606 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA ++L + ++ + + + + + + Sbjct: 607 RAKEELTLTCARRRMIRGETQYNKMSRFLKEIPMDLLATGAVFEKEEEPPRQGAYAQARQ 666 Query: 717 HHPENTPLEREETIKQ 732 ++Q Sbjct: 667 TFRTKAFGGAARPVRQ 682 >gi|315652267|ref|ZP_07905259.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986] gi|315485390|gb|EFU75780.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986] Length = 733 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 105/548 (19%), Positives = 182/548 (33%), Gaps = 120/548 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ KKN LDF+DLI + +L + + +I++DE QDT+ Sbjct: 169 AARIYEIYQSTLKKNNALDFDDLICRSVELFEN---CPDVLDYYQNRFRYIMVDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+++I L++ + + + VGD+ QSIY F GA + +L + + Sbjct: 226 TAQFKLIYLLSQKY----------KNICVVGDDDQSIYKFRGANIENILSFEDKFEN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I+L ++RST +IL + V + S Sbjct: 273 -----VEVIKLEQNYRSTENILNAANAVIKNNRGRKNKS--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + T L Q ++A A I I Sbjct: 307 LWT--------------DGVTGANIELRQFANADAEADFIIKDIKAKAND---------- 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 KD VL R + L+ L + IKD++A + I Sbjct: 343 --NFKDFAVLYRTNAQSRLLEERCVTL----GVPYQLVGGVNFYQRKEIKDVLAYLKTIA 396 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN----CGISKFQHV 484 + DD++ + ++ P I K+ ++Y+ + N K + Sbjct: 397 NGSDDIALLRIINLPKRGIGATTIAKVADYANENGISLYDAMTVCENIGIGKAADKIKKF 456 Query: 485 IKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNE 540 I I E A+ + + +L + G + ++E +N ++ E Sbjct: 457 IAMIEEFRDKVAKKANIANMIEELLDKTGYIESLYDEGEIEGESRKENIEELVNKSVDYE 516 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + E+ + N + + +MT+H AKGLE V+L +F Sbjct: 517 DGE---LSLFLEEVSLVADIDRMD--ENADRITLMTLHGAKGLEFDTVYLAGMEEGLFPS 571 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + + EE RL YVG+TRA Sbjct: 572 ----------------------------------AMSSISREDLEEERRLAYVGITRAKK 597 Query: 661 QLIICKHS 668 LI+ Sbjct: 598 NLILTSAK 605 >gi|293365526|ref|ZP_06612235.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] gi|291315894|gb|EFE56338.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] Length = 763 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 101/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 306 --LW-------TQNPDGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRGFANMQDMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREKLDQLTITELVEAVLEKTGYIDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVF+ Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLIEYQGLARPA 652 >gi|67924839|ref|ZP_00518236.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501] gi|67853326|gb|EAM48688.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501] Length = 772 Score = 307 bits (785), Expect = 6e-81, Method: Composition-based stats. Identities = 114/562 (20%), Positives = 193/562 (34%), Gaps = 99/562 (17%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 +++ A + + Y+ N LDF+DLI+ L ++ + I + HI Sbjct: 199 ENSYAKGRVIAEVYNEYQTQLAANNALDFDDLILVPVRLFQQNES---ILGYWHSQFKHI 255 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 L+DE QDT+ IQ+E+I+ LT + K+ + R++F VGD QSIYSF A+ +L Sbjct: 256 LVDEYQDTNRIQYELIQLLTTNAEPRKSEWNWENRSIFVVGDADQSIYSFRMADFTILLN 315 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + + ++++L ++RST IL +++ T Sbjct: 316 FQSDFGDGLPDEDTR-TMVKLEENYRSTETILQAANQLIENNSQRIDKILRPTR------ 368 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 ++ D + A + I M+ T Sbjct: 369 ----------------------GEGEEIYCYKAEDERIE-------ADFVMGKIQEMVET 399 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + + D +L R + I F D IK Sbjct: 400 NP--------ELNWGDFALLYRVNAQSRPFEDNF----IRNNIPYNIVGGFKFYDRQEIK 447 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------ 472 D +A R I++ D +S + ++ SP + I + E E ++E ++ Sbjct: 448 DSIAYLRLIVNPFDTVSLLRVINSPRRGIGKTSIDSLLKASQELEIPLWEIVRDETSVKT 507 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529 A I EL + S + F I+ ++ E + + Sbjct: 508 LAGRAAKSVNKFASMIKELQGKLKELSGTEIFDQIMELSGYVDDLKTKGTEEADNRLENI 567 Query: 530 DEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 E + + E+N +SLQ ++ +V +MT+H+AKGLE P+V Sbjct: 568 YELYSAIAQYQEENEDTSLQGYLTNASLASDLDN--LDEGQEKVSLMTLHSAKGLEFPIV 625 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FLV F H + EE Sbjct: 626 FLVGLEQGTFPHVRSLNDPLS----------------------------------LEEER 651 Query: 649 RLLYVGMTRASDQLIICKHSNT 670 RL YVG+TRA +QL I Sbjct: 652 RLCYVGITRAQEQLFISHARER 673 >gi|116630137|ref|YP_815309.1| superfamily I DNA/RNA helicase [Lactobacillus gasseri ATCC 33323] gi|116095719|gb|ABJ60871.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri ATCC 33323] Length = 757 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 130/760 (17%), Positives = 231/760 (30%), Gaps = 135/760 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 40 GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 99 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L + +D Sbjct: 100 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 159 Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K ++T + + A Y+ K++ ++DF+DLI+ T L KK Sbjct: 160 KNDLLTPKDFKAQATSPFEKVTAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 216 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 217 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 266 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + Q + + I+L ++RST IL + V +N + Sbjct: 267 WRGANMENILNFEHDYQDD------EVNTIKLEQNYRSTGHILDAANSVIKNNQNRKPKK 320 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + ++ A + + Sbjct: 321 ---------------------LW-------TDKGDGDKINYYRA---QSGNDEALFIVSK 349 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I KD VL R + + I Sbjct: 350 INEEIKEHHRD-------------YKDFAVLYRTNAQSRNVEEAL----VKSNIPYRIVG 392 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A + + + D +SF ++ P + K ++ + E Sbjct: 393 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 452 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + I ++ S +L ++ + Sbjct: 453 ETFKNLSLAPITGRPAKTLATFGTALKDAIEYSKTHSVTGLTEKLLADFGYKEALENEHT 512 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + L+EFL T R E ++L + +SE+ N+V Sbjct: 513 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 570 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 571 LMTLHAAKGLEFPVVFLVGMEEGLFPLSRATGDPS------------------------- 605 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 EE RL YVG+TRA +L I + + + + + D Sbjct: 606 ---------ELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDL 656 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 +NS + P R ET K+ Sbjct: 657 EFVNQVQSNSAMSIPFAKSSERATSQVYRPKTRIETAKKA 696 >gi|311029280|ref|ZP_07707370.1| ATP-dependent DNA helicase PcrA [Bacillus sp. m3-13] Length = 767 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 126/775 (16%), Positives = 243/775 (31%), Gaps = 135/775 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + ++ + L + Sbjct: 32 GAGSGKTKVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVEKLLGPAAEDIWIST 91 Query: 66 FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106 F + L T + + KNI+ + I+ K + + L Sbjct: 92 FHSMCVRILRRDIDRIGMNRNFTILDTTDQLSVIKNILKDRNIDPKKFEPRTILGTISSA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ + K + + Y++ KKN LDF+DLI+ T L K+ Sbjct: 152 KNELMNPEQYAK--QPLGPYEQQVAEIYTDYQKRLKKNQALDFDDLIMTTIHLFKR---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++ +I +DE QDT+ Q+ ++ L + + L VGD QSI Sbjct: 207 PEVLEYYQRKFQYIHVDEYQDTNRAQYTLVNLLADRL----------KNLCVVGDSDQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ ++ L ++RST IL ++V + Sbjct: 257 YRWRGADIANILSFEKDYPN--------AEVVLLEQNYRSTKRILEAANRVIDNNIGRKK 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ + + + S A Sbjct: 309 KN---------------------LW------TENDEGQKIIHYQA--------DSEKSEA 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + + + ++ + D +L R + ++ + I+ Sbjct: 334 QFVVGKMRELMRQNPSR--------TLGDFAILYRTNAQSRVMEEML----LMSNINYTI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DD+S ++ P + KI + Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIANPDDDISLQRIVNVPKRGIGATTVDKIANYATQHDIS 441 Query: 466 VYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +Y + + S+ + I + + ++ S + +L R+ + Sbjct: 442 IYTALAEVDLIGVSGRATSQLKEFRSLIEGYVQMQEYISVTELVEEVLEKSGYREMLKAD 501 Query: 521 FGNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSAN--HNEVRI 574 E ++ +DEFL+ T E+ SL +++L K V + Sbjct: 502 KTIESQSRLENIDEFLSVTKNFEEKYDDKSLVAFLTDLALVADIDKLDEEDPAQQEGVIL 561 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE PVVFL+ VF H Sbjct: 562 MTLHAAKGLEFPVVFLIGMEEGVFPHSRSLFEEAEMEEE--------------------- 600 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 RL YVG+TRA +QL I + ++N + + Sbjct: 601 -------------RRLAYVGITRAEEQLFITNAQMRTLFGRTNINPPSRFIKEIPEELLE 647 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749 ++ K S +T T + + + Sbjct: 648 SEENKEAASRPTPFGGRGSSFGGGSASTFGGSSSTGRARAASPASQTARRTTAPS 702 >gi|303231497|ref|ZP_07318227.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-049-V-Sch6] gi|302513840|gb|EFL55852.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-049-V-Sch6] Length = 729 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 202/615 (32%), Gaps = 117/615 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +YE +KN LDF+DL++ LL+ A + K + +++IDE QDT+ Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSN---AAVLEKYSKRFKYVMIDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + L+ + + + VGD QSIY++ GA+ + +L ++ Sbjct: 226 HAQYLLAYLLSSHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + I+L ++RST IL + V E + Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIDNNEGRPEKN--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW D + + +T+ + A I TI Sbjct: 307 LW------TDKVEGAKIQHFTAQSEHEE--------AAFIGDTIVKKHD---------IH 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D+ +L R + ++ + D IKD++A R + Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482 + DDLS + ++ P + + K+ R +++ + + K + Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVSKLQDYARENGTSLFMTLTQLHLVDTIKGKTKEKLE 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I L+ S D IL Q + + + E L+ Sbjct: 460 EFGILIFTLVAEMDDKSVLDILEAILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519 Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + + +++ + ++ + V +MT+H AKGLE P+VFL +F Sbjct: 520 QDTNPTGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H + EE RL YVG+TRA Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717 +L I + + +++ + + + ++ + K + Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPAELVDSLRAKRRIPDDIKPTVPRHMSVAS 663 Query: 718 HPENTPLEREETIKQ 732 P P+ R E I Sbjct: 664 RPVTKPIIRNEVIAD 678 >gi|15826976|ref|NP_301239.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN] gi|221229454|ref|YP_002502870.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] gi|13632801|sp|Q9CD72|PCRA_MYCLE RecName: Full=ATP-dependent DNA helicase pcrA gi|13092523|emb|CAC29661.1| putative ATP-dependent DNA helicase [Mycobacterium leprae] gi|219932561|emb|CAR70246.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] Length = 778 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 110/656 (16%), Positives = 194/656 (29%), Gaps = 127/656 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156 + ++E I + T + Y+ + LDF+DLI T Sbjct: 156 ANAISNLKNELIDAESAV--ANLSSDTDDLARTVATVYGEYQRRLRTANALDFDDLIGET 213 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 +L+ I + H+L+DE QDT+ Q+ ++R L P L Sbjct: 214 VGILQ---AFPQIAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGHGARNSPDDMPPGEL 270 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD QSIY+F G+ + +R + I L ++RST +IL+ + Sbjct: 271 CVVGDADQSIYAFRGSTISNIEDFERDYP--------DTTTILLEQNYRSTQNILSAANS 322 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 V + + LW + + Sbjct: 323 VIARNFGRRDKR---------------------LW-------TDAGKGELIVGYVSDNEH 354 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + A+ IA I ++G I D+ VL R + + + Sbjct: 355 DE-------AKFIADEIDALVGGGE---------ITYDDVAVLYRANNLSRSLEEVF--- 395 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I F + I+DL+A R + + D +S +L +P + + Sbjct: 396 -IPTGIPYKVVGGFCFYESKEIRDLIAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACV 454 Query: 457 CTQRHETETVYEYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 T T + + + + + +L + + Sbjct: 455 SVYAENTGTSFADALQAVAEGKVPMLNTRSVKAIAGFVALLDDLRCRV-DDDLGELVESV 513 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-----------------EQNSYSSL 547 L ++ S + +D L+E ++F E Sbjct: 514 LERSGYLRELESSTDPQELARLDNLNELVSFAHEFSTEQANAAALAKSLHTPEDEDVPDT 573 Query: 548 QELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L + LE+ N V +MT+H AKGLE PVVF+ + H Sbjct: 574 GALAAFLEKVSLMSDTDQIPENNSGVVTLMTLHAAKGLEFPVVFVTGWEDGMLPHMRTLG 633 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 E RL YVG+TRA +L + Sbjct: 634 DPT----------------------------------ELSEERRLAYVGITRARQRLYLS 659 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + S+ + + + ++ LT+S + A + P + Sbjct: 660 RAITRSSWGQPILNPESRFLREIPPELIDWRRSILTDSYSTPASGASRFGRVRPSS 715 >gi|302386124|ref|YP_003821946.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] gi|302196752|gb|ADL04323.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] Length = 762 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 118/726 (16%), Positives = 225/726 (30%), Gaps = 139/726 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + ++ N + ++ L Sbjct: 27 GAGSGKTRVLTHRIAYLIEEKSINPWNILAITFTNKAAGEMRERVDRLVGFGADSIWVST 86 Query: 66 FS---------LLSSFFLTQKFTPQKNIITQ-------EINKKSPDLKEKLKKSQDEFIK 109 F + S T FT + + + P + + + Sbjct: 87 FHSSCVRILRRHIESLGYTTNFTIYDSDDQKTLMRHVLKGLDMDPKIYKD-RAMLGFIST 145 Query: 110 IRDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ T + F+ + Y+ +KN LDF+DLI+ L + Sbjct: 146 AKNELVTAEEFEQNAGGDFRQKKVAQIYKEYQNQLRKNNALDFDDLIMKAVQLFQNNPE- 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 I + +I++DE QDT+ Q+++I L + R L VGD+ QSI Sbjct: 205 --ILDYYQERFKYIMVDEYQDTNTAQFKLISLLAGKY----------RNLCVVGDDDQSI 252 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y F GA + +L ++ +I+L ++RS+ IL ++V + Sbjct: 253 YKFRGANIENILNFEKAYP--------GAKVIKLEQNYRSSQSILNAANEVIRHNRGRKD 304 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW + + + ++ + A Sbjct: 305 KT---------------------LW-------TANEEGPLVQFKQFENASEE-------A 329 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I N + +D VL R + LI + + Sbjct: 330 DAIVRDIRN-------------SSSEYQDCAVLYRTNAQSRLIEEK----CLQHNVPYRM 372 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465 IKD+++ + I + DDLS + ++ P + ++ Sbjct: 373 VGGVNFYQRKEIKDILSYLKTIANGRDDLSSLRIINVPKRGIGATSLGRVQAFASEHGFA 432 Query: 466 VYEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFI 518 VY+ + K + I + + S HD IL +++ Sbjct: 433 VYDAFCRAKAVPGLGKTAEKILKFTELIEDFRNRLDEETYSIHDLIEDILDETGYQKELE 492 Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRI 574 + E ++ ++E +N + E +L E + E+ + S N V + Sbjct: 493 TEGEIEYQTRLENIEELINKAVSFEGEHEHPNLNEFLEEVALVADIDRMDDSE--NRVTL 550 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H+AKGLE P V+L +F Sbjct: 551 MTLHSAKGLEFPRVYLSGMEDGLFPSMMS------------------------------- 579 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 I K EE RL YVG+TRA + L++ ++ + + Sbjct: 580 -ISSDDKEAVEEERRLCYVGITRARNFLMMTAARQRMVNGETRYSKISRFIEEIPGELLD 638 Query: 695 VKKIKL 700 K++ Sbjct: 639 SNKLEP 644 >gi|299144359|ref|ZP_07037439.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518844|gb|EFI42583.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 730 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 107/596 (17%), Positives = 198/596 (33%), Gaps = 117/596 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + YE+ K N LDF+D++I T +L + + I+ + +I +DE QDT+ Sbjct: 168 VGEIYNLYEKKLKDNNALDFDDILIKTVELFENNED---IKNYYQDKFKYIFVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +IQ+ +I+ L ++ L VGD QSIY + GA+ +L ++ Sbjct: 225 MIQYRLIKLLC----------NASPNLTVVGDNDQSIYKWRGADISNILNFEKDF----- 269 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + +I L ++RST+ IL V + V N + + Sbjct: 270 ---KDAKVILLEQNYRSTSKILNVANSVIKNNGNRKDKN--------------------- 305 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + + + S +E + + T + Sbjct: 306 LW-------TDNGVGEDVVYRVFRHSQEEEQAVT-----------------TKMLQLNYK 341 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 D+ +L R + KI D +KD++A + I Sbjct: 342 GHAFSDMAILYRTNAQSRGFEEAL----IREKIPYKIVGGLRFYDRKEVKDIIAYLKVIQ 397 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-ETVY------EYIQKFANCGISKFQ 482 + DD++ ++ P I + E +++ E ++ + Sbjct: 398 NTADDVAINRIINVPKRGIGAQSIEDMSKYADENFISLFSVIDGIEENEQLNLRSKKNVK 457 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 I+ L AQ S ++ + E D + E ++ + Sbjct: 458 EFANLINLLRLNAQELSVSKLIEKVIYESGYISDLEAENTVEARSRIDNIKELISTAVDF 517 Query: 540 EQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+N+ +L+E +S + K + A+ V++MT+H+AKGLE +VFLV +F Sbjct: 518 ERNNPLGNLEEFLSGISLLSDVDKTSPDAS--AVKLMTIHSAKGLEFKIVFLVGMEEGLF 575 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 RL YVG+TRA Sbjct: 576 PTSRALDDEEDIEEE----------------------------------RRLCYVGVTRA 601 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 L I + K++ + + ++ K T K+ ++ Sbjct: 602 EKYLYISSSQTRTLYGKTSPCLESRFIKEMEDTITKIIPEKETYESKKNLVEVSDF 657 >gi|306825147|ref|ZP_07458489.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432583|gb|EFM35557.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 763 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 101/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREQLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVF+ Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDTGSQETSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|304440549|ref|ZP_07400436.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371027|gb|EFM24646.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 729 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 104/570 (18%), Positives = 196/570 (34%), Gaps = 116/570 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + K + YE+ KKN LDF+DLI+ + +LL+ + ++ ++ +DE QD Sbjct: 164 RITKEIYYEYEKELKKNNALDFDDLILKSVELLQNHEE---VKNYYRDRFEYVFVDEYQD 220 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E++R + + L VGD QSIY++ GA+ +L ++ + Sbjct: 221 TNKSQYEMVRLICRE----------NPNLTVVGDNDQSIYAWRGADISNILNFEKDFKN- 269 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST +IL + + + T + Q G Sbjct: 270 -------AKVVLLEQNYRSTKNILDAANSLIANNP----------TKYKKNLWTSSQGGE 312 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 ++ S D + + + I ++ Sbjct: 313 TVKYKIYSSSFDEE-------------------------KCVIEKIDDL----------- 336 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R +D+ +L R + I+ D +KD+++ +F Sbjct: 337 HRDYPFEDMAILYRTNAQSRGFEEHL----MRAGIAYRVVGGLKFYDRKEVKDIISYMQF 392 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISK-----F 481 I++ +D++S ++ +P + I +T+YE I+ ++ Sbjct: 393 IVNTDDEVSLARIINTPRRGIGGQTVESIRKAAIDSGKTMYEIIKNLDEYNLNIRASKNI 452 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + I L + H+F + + E I+ ++E +N + Sbjct: 453 KKFVDIIENLREKKDSITIHEFIEEVCRESGYIEDLEKENTVESRSRIENIEELINSSYE 512 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+N L L S + V +MTVH AKGLE VVFLV +VF Sbjct: 513 YEKNYEE--PNLEEYLSSLSLLSDVDKSEDTGGVSLMTVHGAKGLEFKVVFLVGMEERVF 570 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YV +TRA Sbjct: 571 PSG----------------------------------RSMDEDDEVEEERRLAYVAITRA 596 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 +QL + + ++ + + + Sbjct: 597 KEQLFVSSCKSRNSYGQPTYNKPSRFIEEM 626 >gi|329121051|ref|ZP_08249682.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM 19965] gi|327471213|gb|EGF16667.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM 19965] Length = 735 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 101/546 (18%), Positives = 180/546 (32%), Gaps = 116/546 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++ K+N LDF+DL+ T ++L + IR K + +ILIDE QDT+ Sbjct: 172 DVYELYDKYMKQNNALDFDDLLKLTTEMLYE----KNIREKWQKRFKYILIDEYQDTNHA 227 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + + + + + AVGD QSIYS+ GA+ K ++ K + Sbjct: 228 QYLMAKYIAGED----------CNICAVGDVDQSIYSWRGADLKNIIDFKSDYPQ----- 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++RST IL + V + + LW Sbjct: 273 ---AEIIKLEQNYRSTKTILNAANSVIKNNIDRPSKN---------------------LW 308 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 D + A I TI Sbjct: 309 -------TQNDKGDLIQRYKASDEHAE-------ADFIINTIKEEHDK---------NNC 345 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +L R + ++ I D I+D++A + I + Sbjct: 346 SYGNFAILYRMNAQSRVLEESL----VKKGIGYTMVGGTRFYDRAEIRDILAYLKVISNY 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-----YIQKFANCGISKFQHVI 485 +DD+S + ++ P + K + + + +++E + K Q Sbjct: 402 KDDISLLRIINVPKRGIGSVTVQKLLNFAKDKNISIFETLIMLEESSLSESVQKKIQKFS 461 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542 I +L++ + C + ++L + + + E L+ Sbjct: 462 ALIFKLVNESIQCDVFELIDMVLKETEYIAALHESNDPKSQSREENIGELLSVAKDFINE 521 Query: 543 SYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + + ++ ++V +MTVH+AKGLE P VFL +F Sbjct: 522 KPDGTLSDFLEKVALVNDVDNYETVN--DKVTLMTVHSAKGLEFPFVFLAGMDEGIFPG- 578 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + + +S EE RL YV +TRA ++ Sbjct: 579 ---------------------------------VRSLMDESALEEERRLCYVAITRAKEK 605 Query: 662 LIICKH 667 L I Sbjct: 606 LFITSS 611 >gi|313891747|ref|ZP_07825352.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus UPII 345-E] gi|313119741|gb|EFR42928.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus UPII 345-E] Length = 735 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 101/546 (18%), Positives = 180/546 (32%), Gaps = 116/546 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++ K+N LDF+DL+ T ++L + IR K + +ILIDE QDT+ Sbjct: 172 DVYELYDKYMKQNNALDFDDLLKLTTEMLYE----KNIREKWQKRFKYILIDEYQDTNHA 227 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + + + + + AVGD QSIYS+ GA+ K ++ K + Sbjct: 228 QYLMAKYIAGED----------CNICAVGDVDQSIYSWRGADLKNIIDFKSDYPQ----- 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++RST IL + V + + LW Sbjct: 273 ---AEIIKLEQNYRSTKTILNAANSVIKNNIDRPSKN---------------------LW 308 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 D + A I TI Sbjct: 309 -------TQNDKGDLIQRYKASDEHAE-------ADFIINTIKEEHDK---------NNC 345 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +L R + ++ I D I+D++A + I + Sbjct: 346 SYGNFAILYRMNAQSRVLEESL----VKKGIGYTMVGGTRFYDRAEIRDILAYLKVISNY 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-----YIQKFANCGISKFQHVI 485 +DD+S + ++ P + K + + + +++E + K Q Sbjct: 402 KDDISLLRIINVPKRGIGSVTVQKLLNFAKDKNISIFETLIMLEESSLSESVQKKIQKFS 461 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542 I +L++ + C + ++L + + + E L+ Sbjct: 462 ALIFKLVNESIQCDVFELIDMVLKETEYIAALHESNDPKSQSREENIGELLSVAKDFINE 521 Query: 543 SYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + + ++ ++V +MTVH+AKGLE P VFL +F Sbjct: 522 KPDGTLSDFLEKVALVNDVDNYETVN--DKVTLMTVHSAKGLEFPFVFLAGMDEGIFPG- 578 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + + +S EE RL YV +TRA ++ Sbjct: 579 ---------------------------------VRSLMDESALEEERRLCYVAITRAKEK 605 Query: 662 LIICKH 667 L I Sbjct: 606 LFITSS 611 >gi|266624561|ref|ZP_06117496.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479] gi|288863577|gb|EFC95875.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479] Length = 805 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 123/726 (16%), Positives = 228/726 (31%), Gaps = 139/726 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + Sbjct: 27 GAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDKIVGFGAESIWVST 86 Query: 66 FS---------LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116 F + S T FT + + + ++ E L + + +T Sbjct: 87 FHSSCVRILRRHIESLGYTTNFTIYDSDDQRTLMRQVLKTLE-LDPKLYKDRAMLSLIST 145 Query: 117 YKMFKSTLASLTL----------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 K T A L A + Y+ KKN LDF+DLI+ T +L + Sbjct: 146 AKNELVTAAEFELNAGGDFRQKKAAQIYKEYQGQLKKNNALDFDDLIMKTVELFQNNPE- 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I++DE QDT+ Q++++ L + R L VGD+ QSI Sbjct: 205 --VLDYYQERFKYIMVDEYQDTNTAQFKLVSLLAGKY----------RNLCVVGDDDQSI 252 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y F GA +L ++ ++I+L ++RS+ +IL ++V + Sbjct: 253 YKFRGANIGNILNFEKSYP--------GAAVIKLEQNYRSSQNILNAANEVIRHNRGRKS 304 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + WT+ + + A Sbjct: 305 KTL---------------------------------------WTANEEGPLVQYKQFETA 325 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 A I I +D VL R + LI + Sbjct: 326 AEEADAIVRDIQNS---------GCGYQDCAVLYRTNAQSRLIEEK----CLQRNVPYRM 372 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465 IKD++A + I + DDLS + ++ P + K+ + Sbjct: 373 VGGVNFYQRKEIKDILAYLKTIDNGRDDLSALRIINVPKRGIGGTSVGKVQAFASEHDFS 432 Query: 466 VYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFI 518 +Y+ + K I + ++ S + +L +++ Sbjct: 433 MYDAFCRAQAVPGLGKAADKILKFTALIEDFRERIRYEDYSIRELIEDVLDESGYQKELE 492 Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRI 574 + E ++ ++E +N + E++ L E + E+ + S N V + Sbjct: 493 AEGEIEYQTRLENIEELINKAVSFERDHDEGTLSEFLEEVALVADVDRMDDSE--NRVTL 550 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H+AKGLE P V+L +F Sbjct: 551 MTLHSAKGLEFPRVYLSGMEDGLFPSMMS------------------------------- 579 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 I K EE RL YVG+TRA D L++ ++ V + + Sbjct: 580 -ISSDDKEEIEEERRLCYVGITRAQDFLMLTGAKQRMINGETRYSKTSRFVDEIPADLLD 638 Query: 695 VKKIKL 700 K++ Sbjct: 639 CDKLEP 644 >gi|331004225|ref|ZP_08327704.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411498|gb|EGG90909.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon 107 str. F0167] Length = 735 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 99/565 (17%), Positives = 175/565 (30%), Gaps = 120/565 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 L Y+ A KKN LDF+DLI + +L +K + +I++DE QDT+ Sbjct: 169 LARLYELYQSALKKNNALDFDDLICRSVELFEK---CPEVLDYYQNRFRYIMVDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +I L + + + + VGD+ QSIY F GA + +L + + Sbjct: 226 TAQFRLIYLLAQKY----------KNICVVGDDDQSIYKFRGANIENILSFEERFEN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I+L ++RST +IL + V + + ++ Sbjct: 273 -----VKVIKLEQNYRSTGNILDAANAVIKNNRGRKDKRLWTEG---------ESGENIE 318 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L + + + A I I N Sbjct: 319 LRQFQTANEE--------------------------ADNIIKDIKNRARQ---------- 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 +D VL R + L+ L + IKD++A + I Sbjct: 343 --NFRDFAVLYRTNAQSRLLEERCVTL----GVPYQLIGGVNFYQRKEIKDVLAYLKTIA 396 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYI----QKFANCGISKFQHV 484 + DD++ + ++ P I K + ++Y+ + K + Sbjct: 397 NGNDDIALLRIINVPKRGIGATTIAKVVDYANANDISLYDAMSISENAGVGKASEKIKSF 456 Query: 485 IKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNE 540 I I + +L + G + ++E +N + E Sbjct: 457 IDMIEYFREKIDKKANISSIIDELLDKTGYIESLYDEGEIEGESRKENIEELINKSTEYE 516 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + E+ + N + + +MT+H AKGLE V+L +F Sbjct: 517 DGE---LSLFLEEVSLVADIDRMD--ENADRITLMTLHGAKGLEFDTVYLAGMEEGLFPS 571 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + K EE RL YVG+TRA Sbjct: 572 ----------------------------------AMSANSKEDLEEERRLAYVGITRAKK 597 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMV 685 LI+ ++ + Sbjct: 598 NLILTSAKQRMINGETRYSLMSRFI 622 >gi|312127653|ref|YP_003992527.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108] gi|311777672|gb|ADQ07158.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108] Length = 714 Score = 306 bits (784), Expect = 8e-81, Method: Composition-based stats. Identities = 105/550 (19%), Positives = 180/550 (32%), Gaps = 114/550 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + K+ DF+DL+ T L + I K + +IL+DE QDT+ Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I L++ R + VGD+ QSIYSF GA K +L +++ Sbjct: 226 QFYFIYLLSQ----------KHRNVCVVGDDDQSIYSFRGANIKNILEFEKVF------- 268 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST IL+ ++V + LW Sbjct: 269 -SDAKVIKLEKNYRSTKTILSAANEVIKHNYYRKSKR---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ S FD + + A +A ++ N+I + + Sbjct: 307 -------TDNLEGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------L 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I VL R + Y + + IKD++A R I + Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------TVYEYIQKFANCGISKFQHVI 485 DDLS ++ P + KI E + F K I Sbjct: 399 HDDLSLFRIINVPRRGIGNSTLEKIKVLSKEYGVSAYTVLLERAKIDFDKKTYEKLNSFI 458 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 I +L A+ S L+L + +S E +++ ++ E+ Sbjct: 459 SLIEDLKAEAENLSVSQTIKLVLDKTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518 Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++Q ++ + +V +MTVH AKGLE VVFL +F Sbjct: 519 NEEPTVQNFLNSITLSSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ ++ YV +TRA Sbjct: 576 RAEEPVEAEKELEEERRL-------------------------------CYVAITRAKKL 604 Query: 662 LIICKHSNTS 671 L++ +N Sbjct: 605 LVLTYANNRR 614 >gi|310657865|ref|YP_003935586.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519] gi|308824643|emb|CBH20681.1| ATP-dependent DNA helicase [Clostridium sticklandii] Length = 720 Score = 306 bits (784), Expect = 9e-81, Method: Composition-based stats. Identities = 104/549 (18%), Positives = 191/549 (34%), Gaps = 115/549 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+ K N LDF+DLI T +LLK + ++R ++ ++++DE QDT+ Q Sbjct: 171 VYDLYQRKLKSNNALDFDDLIFKTVELLKTDE---FVRDFYQRKFQYVMVDEYQDTNHAQ 227 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +I L+E + L VGD+ QSIY + GA+ +L ++ + Sbjct: 228 YVLINLLSEM----------HKNLCVVGDDDQSIYGWRGADIANILDFEKDYKDAF---- 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 +++L ++RST IL + V + LW Sbjct: 274 ----VVKLEQNYRSTEVILDGANSVIKRNLGRKNKK---------------------LW- 307 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 ++ +D + A IA I + Sbjct: 308 ------TQLKEGEKIKLHKAYDEKDE-------ANFIAREIKKRQEEEDR---------N 345 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +D +L R + + IS D IKD+MA R + + Sbjct: 346 LRDFALLYRTNAQSRALEEAL----IKQSISYKIFGSLKFYDRKEIKDIMAYLRLVQNPL 401 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQ-----KFANCGISKFQHVIK 486 DDL+ ++ P + K+ + E+++ + + + + Sbjct: 402 DDLALKRIINVPKRGIGAKTLEKLEERALVTGESLFGLLHDLSGFDLSTKVKTTLNKFVM 461 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQN 542 I+ + + + +F ++ K + + +E + ++EF + + + + Sbjct: 462 MINSFMDMKEILPLTEFVQKVIDNTKYVDELKAEETDEANGRIENIEEFKSVVMEFMQNS 521 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 +L+E +S + + V +MT+H+AKGLE PVVFL +F Sbjct: 522 EEKTLEEFLSSVSLVSDLDSID--EEDDFVTLMTLHSAKGLEFPVVFLAGVEEGIFPIS- 578 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 L ++ EE RL YVGMTRA L Sbjct: 579 ---------------------------------RAMLDENQLEEERRLCYVGMTRAKQIL 605 Query: 663 IICKHSNTS 671 I + + Sbjct: 606 YITYANERT 614 >gi|309800339|ref|ZP_07694508.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302] gi|308116036|gb|EFO53543.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302] Length = 623 Score = 306 bits (784), Expect = 9e-81, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 27 QIVAKCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 83 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 84 TNHAQYQLVKLLASRF----------QNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 132 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V +N + + Sbjct: 133 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 166 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 167 --LW-------TQNADGEQIVYYRANDEQDE-------AVFVAKTIDEL---------GR 201 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 202 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 257 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 258 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 317 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I + S + +L ++ E ++ ++EFL+ T Sbjct: 318 WDFANMILDWREQLDQLSITELVETVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 377 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 378 FDDNPDNQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 435 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 436 IGMEENVFPLS----------------------------------RAAEDMDELEEERRL 461 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 462 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLTYQGLARPA 513 >gi|303228942|ref|ZP_07315752.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-134-V-Col7a] gi|302516356|gb|EFL58288.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-134-V-Col7a] Length = 729 Score = 306 bits (784), Expect = 9e-81, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 202/615 (32%), Gaps = 117/615 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +YE +KN LDF+DL++ LL+ A + K + +++IDE QDT+ Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSN---AAVLDKYSKRFKYVMIDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + L+ + + + VGD QSIY++ GA+ + +L ++ Sbjct: 226 HAQYLLAYLLSSHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + I+L ++RST IL + V E + Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIDHNEGRPEKN--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW D + + +T+ + A I TI Sbjct: 307 LW------TDKVEGAKIQHFTAQSEHEE--------AAFIGDTIVKKHD---------IH 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D+ +L R + ++ + D IKD++A R + Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482 + DDLS + ++ P + + K+ R +++ + + K + Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVSKLQDYARENGTSLFMTLTQLHLVDTIKGKTKEKLE 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I L+ S D IL Q + + + E L+ Sbjct: 460 EFGILIFTLVAEMDDKSVLDILEAILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519 Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + + +++ + ++ + V +MT+H AKGLE P+VFL +F Sbjct: 520 QDTNPTGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H + EE RL YVG+TRA Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717 +L I + + +++ + + + ++ + K + Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPAELVDGLRAKRRIPDDIKPTVPRHMSVAS 663 Query: 718 HPENTPLEREETIKQ 732 P P+ R E I Sbjct: 664 RPVTKPIIRNEVIAD 678 >gi|312793467|ref|YP_004026390.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180607|gb|ADQ40777.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 714 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 108/550 (19%), Positives = 180/550 (32%), Gaps = 114/550 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + K+ DF+DL+ T L + I K + +IL+DE QDT+ Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I L++ R + VGD+ QSIYSF GA K +L +++ Sbjct: 226 QFYFIYLLSQ----------KHRNVCVVGDDDQSIYSFRGANIKNILEFEKVF------- 268 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST IL+ ++V + LW Sbjct: 269 -SDAKVIKLEKNYRSTKTILSAANEVIKHNYYRKSKR---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ S FD + + A +A ++ N+I + Sbjct: 307 -------TDNTEGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------F 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I VL R + Y + + IKD++A R I + Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHVI 485 DDLS ++ P I KI E T + F K I Sbjct: 399 HDDLSLFRIINVPRRGIGNSTIEKIKALSEEYNVSAYTVLLERAKFDFDKKTYEKLNSFI 458 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 I +L A+ S L+L + +S E +++ ++ E+ Sbjct: 459 SLIEDLKAEAEDLSVSSAIKLVLDKTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518 Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +LQ ++ + +V +MTVH AKGLE VVFL +F Sbjct: 519 NEEPTLQNFLNSITLSSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ ++ YV +TRA Sbjct: 576 RAEEPVEAEKELEEERRL-------------------------------CYVAITRAKKL 604 Query: 662 LIICKHSNTS 671 L++ +N Sbjct: 605 LVLTYANNRR 614 >gi|331000444|ref|ZP_08324119.1| putative DNA helicase II [Parasutterella excrementihominis YIT 11859] gi|329571776|gb|EGG53456.1| putative DNA helicase II [Parasutterella excrementihominis YIT 11859] Length = 781 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 106/596 (17%), Positives = 194/596 (32%), Gaps = 114/596 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + A YE ++ DF +L++ +LL + ++ IR+ + IL+DE QDT+++ Sbjct: 169 QIYAMYEAVLQREGACDFAELLLRAYELLSRNEM---IRHHYQERFRFILVDEFQDTNVL 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E ++ L G + P +FAVGD+ QSIY+F GA ++ + + Sbjct: 226 QYEWLKLLA-----GLGEKNPPNAVFAVGDDDQSIYAFRGANVGNMMSFVQEFR------ 274 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RS +IL + + S G + LW Sbjct: 275 --IGEPIRLEQNYRSQGNILDAANALISNNSERMGKN---------------------LW 311 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + N + AR + TI I + Sbjct: 312 TDAGKGEKIRANRSDNDFD--------------EARFVCSTIQEYIDKG----------V 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +DI +L R + L I + D IK+ MA R + Sbjct: 348 SPEDIAILYRSNAQSRLFETEL----TRRGIPFMVYGGLRFFDRAEIKNAMAYMRLAENP 403 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD +F+ ++ P I + +++E +Q +KF + I Sbjct: 404 SDDSAFLRVVNVPARGIGAKSIENLVDFATTNGISLFESMQYIRGAAANKFAAFKEIIDT 463 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN---------- 539 L F + R + + G+E I+ L E + Sbjct: 464 LRVAKDEMPLPAFVDFTVEKSGLRNMYELDPNGSERIENLQELTSAAQGFIKEEAIDTEN 523 Query: 540 -EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + +L L + + + V++MTVH +KGLE +VF+ + Sbjct: 524 SDGTAVENLSALAGFVSHASLEAGENQAQVGQDAVQLMTVHASKGLEFDIVFITGLEEDM 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H K +E RL+YV +TR Sbjct: 584 FPH----------------------------------FRSKNDKKALQEERRLMYVAITR 609 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAY 712 A +L + + +S + + + + + ++ ++ Sbjct: 610 ARKELYLTLAEERMLQGRSFSSYPSSFLTEIPGETLKWLSRNPFESRYEAEDEDSW 665 >gi|258514071|ref|YP_003190293.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM 771] gi|257777776|gb|ACV61670.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM 771] Length = 737 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 107/559 (19%), Positives = 183/559 (32%), Gaps = 116/559 (20%) Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 ++ A + Y++ K +DF+DL+ L K+ + + + + Sbjct: 168 READNILTQKAAGIYKLYQKKLKTYNAVDFDDLLFLVVRLFKEHP---NVLERYQHKFRY 224 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 IL+DE QDT+ +Q+ +++ L + R L VGD Q IY + GA+ + +L Sbjct: 225 ILVDEYQDTNYVQYLLVKMLAQ----------KSRNLCVVGDPDQGIYGWRGADIQNILS 274 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 +R + ++ L ++RST +IL + + S + + Sbjct: 275 FERDYPE--------ACVVTLEQNYRSTQNILDAANHIISYNQGRKEKR----------- 315 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 LW D + AR + I ++ Sbjct: 316 ----------LW-------TDAGKGSPIIVCKSRDEFAE-------ARHVVEQIKHLH-- 349 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + + VL R + ++ + Y + + IK Sbjct: 350 -------LVEGVSYSECAVLYRTHAQSRVLEEIM----LRYGLPYNIIGGLRFYERKEIK 398 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-------TVYEYIQK 472 D++A R I++ D++S ++ P + + KI E + E I Sbjct: 399 DVIAYLRVIVNPADEVSLSRIINVPRRGIGDVSLTKIFAFAAEAGIPAGLAMEMAEQIPG 458 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529 + + + +F D IL RQ+ E + L Sbjct: 459 LNGKARKQAALLGSLLQVWRRQQEFLPVTDLTVDILERTGYRQELEYEGTVEARTRLENL 518 Query: 530 DEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 +EFL+ T + + L E +SEL + V +MT+HTAKGLE P V Sbjct: 519 EEFLSVTRLYDLETVEGTLGEFLSELSLVTDAD--RDNGEAERVNMMTLHTAKGLEFPFV 576 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FLV +F H EE Sbjct: 577 FLVAMEEGIFPHNRALS----------------------------------DAGELEEER 602 Query: 649 RLLYVGMTRASDQLIICKH 667 RL YVGMTRA +L + Sbjct: 603 RLAYVGMTRARQKLYLSYS 621 >gi|251799681|ref|YP_003014412.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2] gi|247547307|gb|ACT04326.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2] Length = 785 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 116/718 (16%), Positives = 224/718 (31%), Gaps = 136/718 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ + + + L + Sbjct: 34 GAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREMQARVAALIGPTGQDIWVST 93 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110 F + L + I + L + K Q E Sbjct: 94 FHSMCVRILRRDIDRIGFTSNFSILDSADQLSVIRNCMKELNIDVKKFEPKAVQAEISGA 153 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + ++ + + Y++ K N LDF+DLI+ T L K+ Sbjct: 154 KNELITPERYEQKTGDYFTDIVAKVFKMYQKRLKSNNSLDFDDLIMTTIQLFKE---MPE 210 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ + R L + + VGD QSIY Sbjct: 211 VLEFYQNKFRYIHVDEYQDTNRAQYMLCRMLAD----------KHHNICVVGDSDQSIYR 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L + + I L ++RS+A+IL + V + + Sbjct: 261 WRGADITNILNFEDDYPE--------ARTIMLEQNYRSSANILEAANAVIKLNTGRKPKK 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW Q + + Sbjct: 313 ---------------------LW-------TDQGEGDMITLYQADSEHDEGY-------F 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + TIS + + + D +L R + +I + I Sbjct: 338 VTGTISKNVKSGR----------RYDDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 383 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 D IKDL+A R I + +DD+S ++ P + + K+ + +++ Sbjct: 384 GIKFYDRKEIKDLLAYLRLISNPDDDISLQRIINVPKRGIGDTTVAKLAEEAVRQGTSIF 443 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + ++ I L + + S + +L + R + Sbjct: 444 SVLGNLQGIDLNARAQGLLHEFRDMIDNLTQMVDYLSVTELTEKVLEMSQYRIELQREKT 503 Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAH-----SANHNEVR 573 E ++ +DEFL+ T+ E +N +L +++L A++N V Sbjct: 504 LESTARLENIDEFLSVTMDFEKRNEDKTLVAFLTDLALIADIDSMDKDDDGKPADNNSVV 563 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE PVVF++ +F H + Sbjct: 564 LMTMHSAKGLEFPVVFIIGMEESIFPHSRALNDNEELEEERRL----------------- 606 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 YVG+TRA QL + + + + + + + N Sbjct: 607 -----------------AYVGITRAEKQLYLTCARSRTLFGRISANLPSRFLQEVPDN 647 >gi|298253336|ref|ZP_06977128.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1] gi|297532731|gb|EFH71617.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1] Length = 978 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 108/621 (17%), Positives = 202/621 (32%), Gaps = 115/621 (18%) Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L T+ K + I K D K L +++ + + + + Sbjct: 232 ERLVKIIATELNVDIKRFTPRSILGKISDCKNSLITWREQLDMYANDYKPGVAGQQIAHA 291 Query: 127 L---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A Y+ + +DF+DLI+ T L+++ +A ++ +ILID Sbjct: 292 GNSEAVYATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPEAA---QYYRRKFRYILID 348 Query: 184 EVQDTSLIQWEVIRSLTE-----DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 E QDT+ Q+E+IR L + +++P ++ VGD QSIY+F GA+ + + Sbjct: 349 EYQDTNHAQYELIRELAGVDVKQNSANPSQQNNTPASITVVGDSDQSIYAFRGADIRNIQ 408 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 ++ + I L ++RST IL + V S + + Sbjct: 409 DFEKDFPN--------ATTIMLEQNYRSTQTILDAANAVISHNQGRKPKK---------- 450 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 LW + SA A +A I+ + G Sbjct: 451 -----------LWTALGKGTPITGYAA--------------DSAQQEAAWVAQEIARLAG 485 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + + D+ ++ R + + + + + Sbjct: 486 EE---------GVAYSDMAIMYRANAQSRSLEDAL----VKAGLPYQLVGGTKFYERREV 532 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--- 474 KD +A + + + +DD++ +L P + + + + ++ ++ Sbjct: 533 KDALAYLQSMANPDDDVNMRRILNVPKRGLGARAEALLTLYAQTQGVSFWQALEHLESIE 592 Query: 475 ---NCGISKFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 +K + + +H LI P IL + + + Sbjct: 593 GMPTRTATKLKEFRELMHNLITCMQNNDSKPSKVIDSILNDSGLLEDLQRSEDPQDAARV 652 Query: 527 DVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLE 584 D L + + EQN+ S+ + + + +V +MT+HTAKGLE Sbjct: 653 DNLSQLQSVAAEYEQNTPDASVAGFLETTALVADSDQLPDENEDTGKVTLMTLHTAKGLE 712 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVFL F H Sbjct: 713 YPVVFLTGMEQGTFPHSRAL----------------------------------EDDGEL 738 Query: 645 EEYNRLLYVGMTRASDQLIIC 665 E RL YVG+TRA +L + Sbjct: 739 CEERRLAYVGITRAKQRLYVT 759 >gi|307706682|ref|ZP_07643488.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321] gi|307617926|gb|EFN97087.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321] Length = 763 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 104/591 (17%), Positives = 195/591 (32%), Gaps = 122/591 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVSQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIQNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIVYYRANDELDE-------AIFVARTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQNMSMLDASANIMLSGIKGKVAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + D +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREQLDQLNITDLVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTSDGPEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF + EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDQDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARP 651 >gi|220906933|ref|YP_002482244.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425] gi|219863544|gb|ACL43883.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425] Length = 797 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 108/572 (18%), Positives = 196/572 (34%), Gaps = 102/572 (17%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+++ N LDF+DLI+ L K+ + + Q +HIL+DE QD Sbjct: 206 RVIANVYGMYQDSLAANNALDFDDLILMLVQLFKQNE---QVLSYWHQRFHHILVDEYQD 262 Query: 188 TSLIQWEVIRSLT---EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q+E+IR L + N R++F VGD QSIYSF A+ K +L ++ Sbjct: 263 TNRTQYELIRLLATNGAEPQQYHNWEEDNRSIFVVGDVDQSIYSFRAADFKILLDFQQDF 322 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 R + + ++++L ++RST +IL +++ T H Sbjct: 323 GDRLPD-ERTATMVKLEENYRSTENILQAANELIENNTERIDKVLKPTRGCGHA------ 375 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 +++ A + I +++ Sbjct: 376 -----------------------------IYCHRDNDEIAEAEFVVEQIRSLV------- 399 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + +L R + + I D IKD++A Sbjct: 400 --HQPGFDWNSFAILYRTNAQSRPFEEAL----VRWAIPYTVVGGLKFYDRKEIKDVLAY 453 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I++ D LS + ++ +P + + ++ + ++E IQ A Sbjct: 454 LRLIINPADSLSLLRVINTPRRGIGKTTLDRLTDAAKALGVPLWEIIQDETSVKTLAGRS 513 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLN 534 + I +L S + +L S+ +E + + E N Sbjct: 514 AKPMLSFVGLIQQLTAQVNEVSAPEVVQAVLEGSGYLDDLKSQGTDEADERLRNVQELYN 573 Query: 535 FTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 L+ E++ +L E +++ V +MT+H++KGLE PVVFLV Sbjct: 574 AVLQFDEESEGGTLSEFLAKASLASDLD--DLGEGKATVSLMTLHSSKGLEFPVVFLVGL 631 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F + L ++ EE RL YV Sbjct: 632 EQGLFPN----------------------------------LRALDDPASLEEERRLCYV 657 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 G+TRA ++L I + + Sbjct: 658 GITRAQERLFISHVRERRLYGNREPASPSLFL 689 >gi|209525368|ref|ZP_03273909.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328] gi|209494219|gb|EDZ94533.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328] Length = 779 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 106/556 (19%), Positives = 182/556 (32%), Gaps = 99/556 (17%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + + Y++A N LDF+DLI+ L ++ + + Q+ HIL+DE QD Sbjct: 205 RVTSEVYSLYQDALAANNALDFDDLILVPVALFRQNE---QVLAYWHQKFCHILVDEYQD 261 Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+++IR LT + + + R++F VGD QSIYSF A+ + +L ++ Sbjct: 262 TNRTQYDLIRLLTTNGEAPPSFHNWQNRSIFVVGDVDQSIYSFRMADYRIMLEFQQDFGD 321 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + + ++I+L ++RS +IL V + + T Sbjct: 322 GLPDDDSR-TLIKLEENYRSRENILEVANHLIQNNTTRIDKILRPTR------------- 367 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 D + + A + I +I + Sbjct: 368 ---------------SPGVPVCCHKADDEMAE-------ANFVVDNIRTIINQNP----- 400 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 I +L R + + I D IKD ++ R Sbjct: 401 ---EIGFGSFAILYRTNAQSRPFEDVL----LRENIRYNIVGGLKFYDRREIKDAISYLR 453 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGIS 479 I + D +S ++ P I + + ++E I + Sbjct: 454 VIANPADSVSLQRVINVPRRGIGRTTIDGLNNAAQQLGVPLWEIISDQDSVNTISGRAAK 513 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 + I + + + IL Q + +E D L E N Sbjct: 514 SVNRFAQMIQSWRDRLETTTALEILDGILEDSGYSQDLKQQGTDEADNRLDNLRELCNAV 573 Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + E+ +SLQ ++ V +MT+H+AKGLE P+VFLV Sbjct: 574 SQFQEEQEDTSLQAFLASASLSSDLDN--LQEGEEAVSLMTLHSAKGLEFPIVFLVGLEE 631 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + + EE RL YVG+ Sbjct: 632 GLFPNFRSINDPLS----------------------------------LEEERRLCYVGI 657 Query: 656 TRASDQLIICKHSNTS 671 TRA +QL I Sbjct: 658 TRAQEQLFITHARERR 673 >gi|170077156|ref|YP_001733794.1| ATP-dependent DNA helicase II PcrA [Synechococcus sp. PCC 7002] gi|169884825|gb|ACA98538.1| ATP-dependent DNA helicase II PcrA [Synechococcus sp. PCC 7002] Length = 788 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 118/623 (18%), Positives = 200/623 (32%), Gaps = 99/623 (15%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ A N LDF+DLI+ L ++ + I + +HIL+DE QD Sbjct: 203 KVVAEVYEAYQTALAANNSLDFDDLILIPVRLFQQNES---ILGYWHSQFHHILVDEYQD 259 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ IQ+E+IR L+ + + R+LF VGD QSIYSF A+ +L + Sbjct: 260 TNRIQYELIRLLSTNGETNQAALGWHNRSLFVVGDADQSIYSFRMADFTILLEFQENFGD 319 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 R + + ++++L ++RS +IL + + +T Sbjct: 320 RLPDDETQ-TMVKLEENYRSRENILKAANALIEQNSQRIDKVLKATR------------- 365 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 +E + D+ +E AR + I + + Sbjct: 366 ----------------GAGEEIYCHKADNENEE------ARFVLNQILGLRRKNPELD-- 401 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 D +L R + L I F D IKD +A + Sbjct: 402 ------WGDFAILYRTNAQSRPFED----LLIRNNIPYQVVGGFKFYDRKEIKDALAYLK 451 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGIS 479 I + D LS + ++ +P + + K+ E ++E + A Sbjct: 452 AIANPADTLSLMRVINTPKRGIGKTTVDKLNHAAQELGCPLWEILSDETSVATIAGRAAR 511 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 K I E+ D ++ + E + + E N Sbjct: 512 KINEFAGLIQEMQGKMATMRGADILDYVMENSGYIDDLKMQGTEEADSRVENISELYNAM 571 Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L+ ++N SSL + + +V +MT+H+AKGLE PVVFLV Sbjct: 572 LQFQDENEDSSLNGFLENASLASDLD--DLNDESQQVSLMTLHSAKGLEFPVVFLVGLEQ 629 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F H + EE RL YVG+ Sbjct: 630 GLFPHTRSLNDPV----------------------------------ALEEERRLCYVGL 655 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA +QL + + + K E S Sbjct: 656 TRAQEQLFLSYTRERYMWGYREPAVASQFLAELPQELVTSNGRSPAPMPPKQEPKMMSIS 715 Query: 716 THHPENTPLEREETIKQLMDEQK 738 ER+ ++ ++ Sbjct: 716 QKQRSQKRRERQAARTEVAQQKW 738 >gi|322389226|ref|ZP_08062787.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 903] gi|321144131|gb|EFX39548.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 903] Length = 767 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 98/592 (16%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 172 QIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPD---VLTYYQQKFQYIHVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + + + Sbjct: 277 ------DAKVVLLEENYRSTKTILQAANDVIKNNRHRRPKN------------------- 311 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 312 --LW-------TQNEDGEEIVYYRANDEQDE-------AVFVAKTIEELSREA------- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +D VL R + I I I+D++A Sbjct: 349 --GYKHRDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVIAYLNL 402 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + + ++ + Sbjct: 403 IANLSDNISFERIINEPKRGIGPGTVDKIRDFAQMQESSLLDASANIMLSGIKGKAAQAI 462 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E I+ + EFL+ T Sbjct: 463 WDFANLILDLRERLDQLTITELVEEVLDKTGYMTALTNQGNLESQARIENIQEFLSVTKN 522 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 +++ +L +++L T + +EV +MT+H AKGLE PVVFL Sbjct: 523 FDENGETVDDESGVETLSRFLNDLALIADTD--DGAQETSEVTLMTLHAAKGLEFPVVFL 580 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 581 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 606 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ +++ + + + + + Sbjct: 607 AYVGITRAEKVLFLTNANSRLLFGRTSYNRPTRFINEISSDLLSYQGLARPA 658 >gi|315613237|ref|ZP_07888147.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC 49296] gi|315314799|gb|EFU62841.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC 49296] Length = 763 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 100/592 (16%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQEMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREQLDQLTITELVEAVLEKTGYVDILNAQATLESKVRVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVF+ Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ +++ + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTSYNRPTRFINEISSDLLEYQGLARPA 652 >gi|260584785|ref|ZP_05852530.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC 700633] gi|260157442|gb|EEW92513.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC 700633] Length = 755 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 125/777 (16%), Positives = 243/777 (31%), Gaps = 141/777 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L +V N + ++ L Sbjct: 21 GAGSGKTRVLTHRMAYILAEEEVHPWNILAITFTNKAAREMKERVSQLVGPQAEDMWVST 80 Query: 66 FSLLSSFFLTQKFTPQ------------------KNIITQ-EINKKSPDLKEKLKKSQDE 106 F + L + K I+ + +I+ + D + L + Sbjct: 81 FHSMCVRILRRDIELLGYQRSFTICDPSEQQTAMKRILKKLDIDSEKYDYRMILNRISQA 140 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D K K T + Y++ K+ LDF+DLI+ T L +K + Sbjct: 141 KNDLEDVEEFSK--KYTGYVEQIIAKCYREYQKELAKSMTLDFDDLIMLTVQLFQKHPET 198 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 Q+ +I +DE QDT+ Q+ ++ L + F + + VGD QSI Sbjct: 199 ---LQYYQQKFQYIHVDEYQDTNHAQYRLVTMLAKKF----------KNICVVGDADQSI 245 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ +L ++ Q ++ L ++RST IL + V N + Sbjct: 246 YGWRGADMSNILEFEKDYQN--------AKVVLLEQNYRSTKTILQAANHVIENNFNRKV 297 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW Q ++ + Sbjct: 298 KK---------------------LW-------TENEEGQPITYYRAQSEQDEG------- 322 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 R + I +++ D +L R + ++ I Sbjct: 323 RYVLSQIQSLLRDG----------YHYDDFAILYRTNAQSRVMEENL----LKSNIPFRL 368 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 + L IKDL+A R I++ +DDLSF ++ SP + K+ + Sbjct: 369 VGGQRFFERLEIKDLLAYLRLIVNPQDDLSFRRIVNSPKRGIGATSLDKLNDFASMHQFS 428 Query: 466 VYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + E + A + + I +L + +F S +F ++ + Sbjct: 429 LLEASSQIAISPLSGKAAKALEKFAEMIEDLRKMQEFLSISEFVEQVIEKTGYLAALEQQ 488 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ------NSYSSLQELISELEQYPPTIKRAHSANHNE 571 E + + EF++ + EQ + S L + +++L Sbjct: 489 HTMEADARIENIQEFISVAKQFEQDRLEEESEDSPLLQFLTDLSLVSDADSDDGDGR--M 546 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVF++ +F Sbjct: 547 VTLMTLHAAKGLEFPVVFIIGLEEGIFPSLRSI--------------------------- 579 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA +L + + ++ + + + Sbjct: 580 ------MENGDDVEEERRLAYVGITRAEQKLFLTNAYSRLLYGRTQTNRPSRFLLEIGED 633 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 K+ + + +++ ++ R ++ + + P++ Sbjct: 634 LFDSKQQQSYSYTSRESSSFTSKTSSSGSLFDKYRAKSQATAYQPKAVQPSSIQPVR 690 >gi|312876019|ref|ZP_07736008.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A] gi|311797217|gb|EFR13557.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A] Length = 714 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 107/550 (19%), Positives = 180/550 (32%), Gaps = 114/550 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + K+ DF+DL+ T L + I K + +IL+DE QDT+ Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + L++ R + VGD+ QSIYSF GA K +L +++ Sbjct: 226 QFYFVYLLSQ----------KHRNVCVVGDDDQSIYSFRGANIKNILEFEKVF------- 268 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RST IL+ ++V + LW Sbjct: 269 -SDAKVIRLEKNYRSTKTILSAANEVIKHNYYRKSKR---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ S FD + + A +A ++ N+I + + Sbjct: 307 -------TDNTEGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------V 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I VL R + Y + + IKD++A R I + Sbjct: 343 LPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHVI 485 DDLS ++ P I KI E T + F K I Sbjct: 399 HDDLSLFRIINVPRRGIGNSTIEKIKALSEEYNVSAYTVLLERAKFDFDKKTYEKLNSFI 458 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 I +L A+ S L+L + +S E +++ ++ E+ Sbjct: 459 SLIEDLKAEAEDLSVSSAIKLVLDKTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518 Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +LQ ++ + +V +MTVH AKGLE VVFL +F Sbjct: 519 NEEPTLQNFLNSITLSSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ ++ YV +TRA Sbjct: 576 RAEEPVEAEKELEEERRL-------------------------------CYVAITRAKKL 604 Query: 662 LIICKHSNTS 671 L++ +N Sbjct: 605 LVLTYANNRR 614 >gi|303257893|ref|ZP_07343902.1| DNA helicase II [Burkholderiales bacterium 1_1_47] gi|302859236|gb|EFL82318.1| DNA helicase II [Burkholderiales bacterium 1_1_47] Length = 787 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 106/596 (17%), Positives = 194/596 (32%), Gaps = 114/596 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + A YE ++ DF +L++ +LL + ++ IR+ + IL+DE QDT+++ Sbjct: 175 QIYAMYEAVLQREGACDFAELLLRAYELLSRNEM---IRHHYQERFRFILVDEFQDTNVL 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E ++ L G + P +FAVGD+ QSIY+F GA ++ + + Sbjct: 232 QYEWLKLLA-----GLGEKNPPNAVFAVGDDDQSIYAFRGANVGNMMSFVQEFR------ 280 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RS +IL + + S G + LW Sbjct: 281 --IGEPIRLEQNYRSQGNILDAANALISNNSERMGKN---------------------LW 317 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + N + AR + TI I + Sbjct: 318 TDAGKGEKIRANRSDNDFD--------------EARFVCSTIQEYIDKG----------V 353 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +DI +L R + L I + D IK+ MA R + Sbjct: 354 SPEDIAILYRSNAQSRLFETEL----TRRGIPFMVYGGLRFFDRAEIKNAMAYMRLAENP 409 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD +F+ ++ P I + +++E +Q +KF + I Sbjct: 410 SDDSAFLRVVNVPARGIGAKSIENLVDFATTNGISLFESMQYIRGAAANKFAAFKEIIDT 469 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN---------- 539 L F + R + + G+E I+ L E + Sbjct: 470 LRVAKDEMPLPAFVDFTVEKSGLRNMYELDPNGSERIENLQELTSAAQGFIKEEAIDTEN 529 Query: 540 -EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + +L L + + + V++MTVH +KGLE +VF+ + Sbjct: 530 SDGTAVENLSALAGFVSHASLEAGENQAQVGQDAVQLMTVHASKGLEFDIVFITGLEEDM 589 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H K +E RL+YV +TR Sbjct: 590 FPH----------------------------------FRSKNDKKALQEERRLMYVAITR 615 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAY 712 A +L + + +S + + + + + ++ ++ Sbjct: 616 ARKELYLTLAEERMLQGRSFSSYPSSFLTEIPGETLKWLSRNPFESRYEAEDEDSW 671 >gi|186681485|ref|YP_001864681.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102] gi|186463937|gb|ACC79738.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102] Length = 773 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 108/633 (17%), Positives = 207/633 (32%), Gaps = 103/633 (16%) Query: 79 TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAH 136 T K ++ +E+N + + +++ + + F+ + + + Sbjct: 157 TLIKELVNKELNLDDKKFDAR--SVRYAISNAKNQGLSPQEFEQDQPNYRGRVIAQVYNL 214 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y++ +N LDF+DLI+ L ++ + + ++ HIL+DE QDT+ Q+++I Sbjct: 215 YQDKLAQNNALDFDDLILVPTRLFQQNE---QVLGYWHRKFRHILVDEYQDTNRTQYQLI 271 Query: 197 RSLTEDFFV-GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 L + R++F VGD QSIYSF A+ +L + + + Sbjct: 272 NLLVTNGETKKTEWQWENRSVFVVGDADQSIYSFRMADFTILLGFQEDFGDGLVDDDTR- 330 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 ++++L ++RS +IL +++ T Sbjct: 331 TMVKLEENYRSCENILQAANELIENNTQRIDKILKPTR---------------------- 368 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 +Q + + L + A + I+ + + Sbjct: 369 ------GAGEQITCHKADEELAE-------AAFVIDQINTLKNQNPELD--------WGS 407 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 +L R + L Y+I D IKD++A R I + D + Sbjct: 408 FAILYRTNAQSRPFEE----LLVKYQIPYTVVGGMRFYDRKEIKDVIAYLRAIANPSDTV 463 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYI 488 S + ++ +P + I + + T++E + A + I Sbjct: 464 SLLRVINTPRRGVGKTTIDALMNASQQLGTTLWEILSDETSVNTLAGRATKAVNNFAAMI 523 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-EQNSY 544 + IL Q +++ +E D + E N L+ E+N Sbjct: 524 SRWQGQIATLPVTEVLQGILEDSGYVQDLMNQGTDEATDRVQNVQELYNAALQFQEENEE 583 Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 SL++ +S V +MT+H +KGLE PVVFLV +F Sbjct: 584 ISLRDFLSSAALSSDLDN--LKEGQTAVSLMTLHASKGLEFPVVFLVGLEQGLFPGYRSL 641 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 ++ EE RL YVG+TRA ++L + Sbjct: 642 SDP----------------------------------ASLEEERRLCYVGITRAQERLYL 667 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 + + K+ Sbjct: 668 SHARERRLYGSREPAMRSQFLDELPEELLATKR 700 >gi|331266303|ref|YP_004325933.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5] gi|326682975|emb|CBZ00592.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5] Length = 763 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 100/592 (16%), Positives = 190/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNQNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AIFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I + + + +L ++ E ++ ++EFL+ T Sbjct: 457 WEFANMILDFREQLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVF+ Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLDYQGLARPA 652 >gi|172038900|ref|YP_001805401.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142] gi|171700354|gb|ACB53335.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142] Length = 772 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 110/562 (19%), Positives = 187/562 (33%), Gaps = 99/562 (17%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + + A + + Y+ N LDF+DLI+ L ++ + I + HI Sbjct: 199 EHSYAKGRIIAEVYQEYQNQLAANNALDFDDLILIPVRLFQQNES---ILGYWHSQFKHI 255 Query: 181 LIDEVQDTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 L+DE QDT+ IQ+E+I+ LT + + R++F VGD QSIYSF A+ +L Sbjct: 256 LVDEYQDTNRIQYELIQLLTTNGELQKSEYNWQNRSIFVVGDADQSIYSFRMADFTILLN 315 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + + ++++L ++RST IL +K+ T Sbjct: 316 FQSDFGDGLPDEDTR-TMVKLEENYRSTETILQAANKLIENNSQRIDKILRPTR------ 368 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 ++ D + A + I ++ T Sbjct: 369 ----------------------GEGEEIYCYQAEDERIE-------ADFVISKIQELVET 399 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + + D +L R + I F D IK Sbjct: 400 NP--------ELNWGDFALLYRVNAQSRPFEDNL----IRNNIPYTIVGGFKFYDRQEIK 447 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------ 472 D +A R I++ D +S + ++ SP + + + E E ++E I Sbjct: 448 DSLAYLRLIINPFDTVSLLRVINSPRRGIGKTSVDSLLKAAQELEIPLWEIISDETSVKT 507 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529 A I EL + S + F ++ + + E + + Sbjct: 508 LAGRAAKSVNKFATMIKELQGKLKELSATELFDQVMELSGYVHELKQKGTEEADNRLENI 567 Query: 530 DEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 E + + E + +SLQ ++ +V +MT+H+AKGLE P+V Sbjct: 568 YELYSAIAQYQEDSEDTSLQGYLTNASLASDLDN--LDEGQEKVSLMTLHSAKGLEFPIV 625 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FLV H + EE Sbjct: 626 FLVGLEQGTLPHIRSLNDPLS----------------------------------LEEER 651 Query: 649 RLLYVGMTRASDQLIICKHSNT 670 RL YVG+TRA +QL I Sbjct: 652 RLCYVGLTRAQEQLFITHARER 673 >gi|323705998|ref|ZP_08117568.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534612|gb|EGB24393.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium xylanolyticum LX-11] Length = 716 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 105/548 (19%), Positives = 183/548 (33%), Gaps = 113/548 (20%) Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 LDF+D+II T +L +K + I + +I+IDE QDT+ Q+E + L + + Sbjct: 183 NALDFDDIIIKTIELFQKNED---ILRYYQDKFRYIMIDEYQDTNRPQYEFVNLLAKKY- 238 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 R L VGD+ QSIY + GA+ K +L ++ + +I+L ++ Sbjct: 239 ---------RNLCVVGDDDQSIYGWRGADIKNILDFEKDYPE--------AKVIKLEQNY 281 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RST IL + V + LW D++ Sbjct: 282 RSTQVILDAANSVIDNNVKRKRKR---------------------LW------TDNKNGE 314 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 + W + + A I TI N++ + D VL R Sbjct: 315 KIVVW--------ESQNERDEANFIIETIKNLVSEGR----------KYSDFAVLYRTNA 356 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + I D IKD++A R +++ DD+S ++ P Sbjct: 357 QSRIFEEAFMA----NDIPYKLVGALRFYDRKEIKDIIAYLRILVNPYDDVSLKRIINVP 412 Query: 445 LFNFSEDDIFKI-CTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501 E I + ++Y + + ++I +LI F + Sbjct: 413 KRGIGESTIASLEKYAVEHDTSMYFAIPHVEVSGRTRKALDSFKEFIDDLISQLDFMTVT 472 Query: 502 DFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQY 557 + +L ++ + E I+ ++EF+ E + SL+ +S + Sbjct: 473 EVIDYVLDKTGYIEELKADGTEESEGRIENINEFIGAAREFMESSQEKSLEAFLSGITLV 532 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 V +MT+H+AKGLE PVVF+ +F + Sbjct: 533 SDIDT--AGEIGESVVLMTLHSAKGLEFPVVFIAGMEEGIFPNSMSFVYEHELEEERRL- 589 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 YVG+TRA ++L + N + K Sbjct: 590 ---------------------------------CYVGITRAKERLFMTYARNRNLYGKPQ 616 Query: 678 QRTWYDMV 685 T + Sbjct: 617 YNTASRFI 624 >gi|315649755|ref|ZP_07902838.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453] gi|315274729|gb|EFU38110.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453] Length = 776 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 119/723 (16%), Positives = 227/723 (31%), Gaps = 133/723 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + + + + ++ L Sbjct: 33 GAGSGKTRVLTHRIGYLIATRKAAPWSILAITFTNKAAREMQERVSKLVGREGQDIWVST 92 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110 F + L + I + L + K Q Sbjct: 93 FHSMCVRILRKDIERIGFTSNFSILDSTDQLSVIRNVMKHHNIDPKKFEPKAVQAAMSAA 152 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + + ++ +L + Y++ K N LDF+DLI+ T L K+ Sbjct: 153 KNELISPQQYEQKAGDYFESLVAKVYTEYQKRLKSNNSLDFDDLIMTTIQLFKE---VPE 209 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ + R L + S + VGD QSIY Sbjct: 210 VLDFYQRKFQYIHVDEYQDTNRAQYMLCRMLAD----------SHHRICVVGDSDQSIYR 259 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ + I L ++RSTA+IL + V + + + Sbjct: 260 WRGADITNILNFEQDYP--------EARTILLEQNYRSTANILNAANNVIGLNTGRKPKN 311 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + P+ + + + Sbjct: 312 ---------------------LW------TEQGEGPKIKVFRGDTEHDEGY--------F 336 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + IS I +D +L R + +I + I Sbjct: 337 VTSEISKNINAGK----------NYQDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A R I + +DD+S ++ P + + + K+ E Sbjct: 383 GIKFYDRKEIKDMLAYLRLISNPDDDISLTRIINVPKRSIGDTTVAKLAAAAGERGISIF 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + FA + I L + +F S + IL + R + + Sbjct: 443 RVLEIVDDLGFAGRTRNALVGFYDMIAALSRMVEFLSVTELTEKILEMSEYRLELQNENT 502 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMT 576 E ++ +DEFL+ T E+ N SL +++L + V +MT Sbjct: 503 IESRSRLENIDEFLSVTQEFEKNNEDKSLISFLTDLALIADIDSMNDDEEDRDDAVVLMT 562 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE PVVF++ VF H + Sbjct: 563 MHSAKGLEFPVVFIIGMEEGVFPHSRAFMDNEELEEERRL-------------------- 602 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 YVG+TRA QL + + ++ + + + Sbjct: 603 --------------AYVGITRAEKQLFLSCARMRTLFGRTTANPPSRFLEEIPEELKEDT 648 Query: 697 KIK 699 ++ Sbjct: 649 QMA 651 >gi|307152628|ref|YP_003888012.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822] gi|306982856|gb|ADN14737.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822] Length = 772 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 113/616 (18%), Positives = 213/616 (34%), Gaps = 103/616 (16%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 S S + + K+I+T+E+ + + + + ++ + + + Sbjct: 142 SWKSNFSIVDESDAQSLIKSIVTKELQLDEKKFEPR--TVRYKISNAKNLGLSPQQYARE 199 Query: 124 LASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + + + Y++ N LDF+DLI+ L ++ + I + HIL Sbjct: 200 NPNYQGKVVAEVYEEYQKQLAANNALDFDDLILIPVRLFEQNET---ILGYWHNQFRHIL 256 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 +DE QDT+ IQ+E IR LT + K+ + R++F VGD QSIYSF A+ +L Sbjct: 257 VDEYQDTNRIQYEFIRLLTTNGETRKSEWNWQDRSIFVVGDADQSIYSFRMADFTILLNF 316 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + + ++++L ++RS +IL +++ + +T +I Sbjct: 317 QADFGDGLPDEMTR-TMVKLEENYRSRENILQAANQLIENNQQRIEKILKATRSI----- 370 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + D + A + I + + Sbjct: 371 -----------------------GEDIFCYKADDERDE-------AGFVIRKIKQLKQEN 400 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 +L R + + I F D IKD Sbjct: 401 PELD--------WGSFAILYRINAHSRSFEEAL----IESNIPYTMVGGFRFYDRQEIKD 448 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------F 473 +A + I++ D +S + ++ +P + + + E ++E I Sbjct: 449 SLAYLKLIVNPSDTVSLLRVINTPRRGIGKTSLEALQGAAKELGVPLWEIISDETSVNTL 508 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLD 530 A K I + +F S + ++ + + +E D ++ Sbjct: 509 AGRAAKSVNQFAKMIQQFQAQTEFLSAAEMLDRVMQETGYIAELQQKGTDEAEDRIANIN 568 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 E LN + ++ + L LE+ + +V +MT+H+AKGLE PVVF Sbjct: 569 ELLNAVQQFQEEYEET--SLQDYLEKASLASDLDQLKEGEQKVSLMTLHSAKGLEFPVVF 626 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 LV +F H + + EE R Sbjct: 627 LVGLEEGLFPHIRSLNDPL----------------------------------SLEEERR 652 Query: 650 LLYVGMTRASDQLIIC 665 L YVG+TRA +QL + Sbjct: 653 LCYVGLTRAQEQLFLT 668 >gi|297242864|ref|ZP_06926802.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD] gi|296889075|gb|EFH27809.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD] Length = 981 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 108/628 (17%), Positives = 203/628 (32%), Gaps = 122/628 (19%) Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L T+ K + I K D K L +++ + + + + Sbjct: 220 ERLVKIIATELNVDIKRFTPRSILGKISDCKNSLITWREQLDMYANDYKPGVAGQQIAHA 279 Query: 127 L---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A Y+ + +DF+DLI+ T L+++ +A + +IL+D Sbjct: 280 GNSEAVYATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPEAA---QYYRHKFRYILVD 336 Query: 184 EVQDTSLIQWEVIRSLTE------------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 E QDT+ Q+E+IR L + +S+P ++ VGD QSIY+F G Sbjct: 337 EYQDTNHAQYELIRELAGVDVKQNNAYAKQNNANTSQQNSTPASITVVGDSDQSIYAFRG 396 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + ++ + I L ++RST IL + V S + + Sbjct: 397 ADIRNIQDFEKDFPN--------ATTIMLEQNYRSTQTILDAANAVISHNQGRKPKK--- 445 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 LW + + + SA A +A Sbjct: 446 ------------------LWTAL-------GKGAPITGYAA-------DSAQQEAAWVAQ 473 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 I+ + G + + D+ ++ R + + + Sbjct: 474 EIARLAGEE---------GVAYSDMAIMYRANAQSRSLEDAL----VKAGLPYQLVGGTK 520 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470 + +KD +A + + + +DD++ +L P + + + + ++ + Sbjct: 521 FYERREVKDALAYLQSMANPDDDVNMRRILNVPKRGLGARAEALLTLYAQTQGVSFWQAL 580 Query: 471 QKFA------NCGISKFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + +K + + +H LI P IL + Sbjct: 581 EHLESIEGMPTRTATKLKEFRELMHNLITCMQNDDSKPSKVIDSILNDSGLLEDLQRSED 640 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTV 577 + +D L + + EQN+ S+ + + + +V +MT+ Sbjct: 641 PQDAARVDNLSQLQSVAAEYEQNTPDASVAGFLETTALVADSDQLPDENEDTGKVTLMTL 700 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 HTAKGLE PVVFL F H Sbjct: 701 HTAKGLEYPVVFLTGMEQGTFPHSRAL--------------------------------- 727 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIIC 665 E RL YVG+TRA +L + Sbjct: 728 -EDDGELCEERRLAYVGITRAKQRLYVT 754 >gi|323490411|ref|ZP_08095623.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2] gi|323395910|gb|EGA88744.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2] Length = 737 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 112/625 (17%), Positives = 201/625 (32%), Gaps = 115/625 (18%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + YE+ KKN LDF+DLI+ T +L + + ++I +DE QDT+ Sbjct: 176 VSDVYTAYEKRLKKNQSLDFDDLIMTTLNLFNT---VPEVLEYYQNKFHYIHVDEYQDTN 232 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+++++ L F + + VGD QSIY + GA+ +L ++ Sbjct: 233 NAQYQLVQKLASKF----------KNICVVGDSDQSIYRWRGADITNILSFEKDYPN--- 279 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I L ++RST IL + V + Sbjct: 280 -----AKVIMLEQNYRSTKRILQAANDVIQKNTSRYPKEL-------------------- 314 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + D + A+ + TI ++ + Sbjct: 315 --------RTENDEGTAITLHKAGDERQE-------AQFVVQTIQKLMDEE--------- 350 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D +L R + ++ + +S D IKDL+A R I Sbjct: 351 NYKTSDFAILYRTNAQSRIMEEMF----VKSNMSYTIVGGTKFYDRKEIKDLLAYLRLIA 406 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANC-----GISKFQH 483 + +DDLS ++ P K+ + T+ + +Q+ Sbjct: 407 NNDDDLSLARVINEPKRGIGATSFEKMARFAIEQDRTIMDALQEADFMGLTPKTAQTALE 466 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540 + + ++ S + +L RQ + G ++ LDEFL+ T E Sbjct: 467 FRNMMASFTQMQEYLSVTELVEEVLKKSGYRQMLQNDKTIEGESRLENLDEFLSVTKAFE 526 Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVF 598 Q+ SL +++L + + + +MT+H AKGLE PVVF++ VF Sbjct: 527 KQSDDKSLVAFLTDLALISDIDSLDDEEDADGPIILMTMHAAKGLEFPVVFIIGLEENVF 586 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H YVG+TRA Sbjct: 587 PHSRSNNDDEELEEERRL----------------------------------AYVGITRA 612 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717 +L + S+ + KSN + + + E+ + + I + Sbjct: 613 EQRLYLTHASSRTLFGKSNFNMPSRFISEISEDLIEQTRAHHRAGATTSYRQIPKRPAVT 672 Query: 718 HPENTPLEREETIKQLMDEQKIPKK 742 P E+ + D+ K Sbjct: 673 RPSYNQSGSEKLGWKTGDKATHKKW 697 >gi|240138235|ref|YP_002962707.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase [Methylobacterium extorquens AM1] gi|240008204|gb|ACS39430.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase [Methylobacterium extorquens AM1] Length = 1116 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 152/876 (17%), Positives = 295/876 (33%), Gaps = 91/876 (10%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151 ++ E K + + + + + + Y+E K+ +LDF+D Sbjct: 303 EADQFHEAAKALHGACCDTWESMRANAASELLVRLVVQVREVLRRYQERKRAGALLDFDD 362 Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211 LI + LL+ + +R + + H+L+DE QDT +Q E++ L + + Sbjct: 363 LIASAATLLRDHE---EVRQALGRRYRHVLVDEFQDTDPLQAEILWLLCGELPADAAGAT 419 Query: 212 ------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 P LF VGD KQ+IY F GA+ ++ + + ++ + +I + +FR Sbjct: 420 WTDRVLRPGALFLVGDPKQAIYRFRGADVSTYVQARDCIRAKSPDD-----VISVSTNFR 474 Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 S IL VD F +G Q G V L C Sbjct: 475 SCRSILAFVDNRFREVLQVEG-----------------QPGYVALDPFHEDHDRGPCVAA 517 Query: 326 QESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKR 383 + + D + A +A + +IG + + R++QA DI +L Sbjct: 518 LDIPAAEGDGKPSAGALRDAEAEAVADLCARLIGQRLVTCSRNGTRILQAGDIALLAPSG 577 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 D I V I+DL+AL R + D L+ +L+ Sbjct: 578 SDLWRYEEALEA----RGIPVSTQAGKGFFRRQEIQDLIALTRVLADPRDTLALGALLRG 633 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQF 497 P +++++ + + Q A+ + VI + L A Sbjct: 634 PAVGLTDEELLDLVDALPRDPERPDARQKLRLGLDIAHVAHPVAREVIGRLQVLARRALG 693 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQ-ELISE 553 +PHD + + A + R R +D FL + + + Sbjct: 694 TTPHDILSQAVDAIRLRPVVRQRHDGHAERALANVDLFLEMSRPYAVRGLRAFARAMKVA 753 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + T++ A V + T+H +KGLE PVV ++T + + +L Sbjct: 754 WDGRTRTVEGRPDAQEAAVSLFTMHASKGLEWPVVIPINT--------STRTKAVSGALV 805 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 D P ++ P R D + ++ E RL YV TRA + L++ + S+ Sbjct: 806 DRPANCLYCPVFGVRPAGYEDALDRERREVGNERVRLWYVAATRARETLVLPRFPEPSDR 865 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 +W ++ + +L E + E Sbjct: 866 T-----SWASVIALGLDAVPAIDLERLP----------LRPMAAVTETLNEQTREVFASE 910 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-NQTFNRGLIIHKLLQV 792 ++L + + + P E++ + RG +IHKLL+ Sbjct: 911 AATVARHRRLTWIVPSRDDAPVPGFEDAGSEPLPVPTEAVSAPLQGGRERGTVIHKLLEE 970 Query: 793 IFTLPEHKRK--NFITSYCTKNAKLWPAK------EYKNLLLSITRLLENPMMTTAMSCD 844 I T +R + + + + ++ + R L P + Sbjct: 971 ILTGELDERDGLEARARFLAGHLGPYGEDGRPAALDPADIAACVARALALPQVAGI-RER 1029 Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQQNI--FIFEYKTHHHVPQEIEHIPYTHIA 902 +EV V +++ +G D ++ ++ + ++K+ ++ + A Sbjct: 1030 LRAEVPVYAYEALDEEERATAGVADALACDERGQPDVVVDWKSDVAPGKDA---LLDYRA 1086 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938 Q++ Y L+++V++ V + Sbjct: 1087 QVARYLAATGARL------GLIVFVTDGTVVSVTPA 1116 >gi|291570130|dbj|BAI92402.1| ATP-dependent DNA helicase PcrA [Arthrospira platensis NIES-39] Length = 779 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 110/556 (19%), Positives = 184/556 (33%), Gaps = 99/556 (17%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + + Y++A N LDF+DLI+ L + + + Q+ HIL+DE QD Sbjct: 205 RVIAEVYSLYQDALAANNALDFDDLILVPVALFSQNE---QVLAYWHQKFCHILVDEYQD 261 Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+++IR LT + + + R++F VGD QSIYSF A+ + +L ++ Sbjct: 262 TNRTQYDLIRLLTTNGEPPPSFHNWQNRSIFVVGDVDQSIYSFRMADYRIMLEFQQDFGD 321 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + + ++I+L ++RS +IL V + + T Sbjct: 322 GLADDDSR-TLIKLEENYRSRENILEVANHLIQNNTTRIDKILRPTR------------- 367 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 D + + A + I +I + Sbjct: 368 ---------------SPGVPVCCHKADDEMAE-------AHFVVDQIRTIINQNP----- 400 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 I +L R + + R Y I D IKD ++ R Sbjct: 401 ---EIGFGSFAILYRTNAQSRPFEDVLRREDVHYNI----VGGLKFYDRREIKDAISYLR 453 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN------CGIS 479 I + D +S ++ P I + + ++E I + Sbjct: 454 VIANPADTVSLQRVINVPRRGIGRTTIDGLNNAAQQLGVPLWEIISDQDSVNTITGRAAK 513 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 + I + + D IL Q + +E D L E N Sbjct: 514 SVNRFAQMIQSWRDRLETTTALDILDGILEDSGYFQDLKQQGTDEADNRLDNLRELCNAV 573 Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + E+ +SLQ ++ V +MT+H+AKGLE P+VFLV Sbjct: 574 SQFQEEEEDTSLQAFLARASLSSDLDN--LQEGQEAVSLMTLHSAKGLEFPIVFLVGLEQ 631 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + + EE RL YVG+ Sbjct: 632 GLFPNFRSINDPLS----------------------------------LEEERRLCYVGI 657 Query: 656 TRASDQLIICKHSNTS 671 TRA +QL I S Sbjct: 658 TRAQEQLFITHTSERR 673 >gi|238855395|ref|ZP_04645706.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3] gi|260665364|ref|ZP_05866212.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US] gi|282932094|ref|ZP_06337551.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|313473070|ref|ZP_07813554.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153] gi|238831993|gb|EEQ24319.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3] gi|239528703|gb|EEQ67704.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153] gi|260560868|gb|EEX26844.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US] gi|281303773|gb|EFA95918.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] Length = 754 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 120/724 (16%), Positives = 227/724 (31%), Gaps = 134/724 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEMKERVQKLLGPAGQDVWMST 89 Query: 66 FSLLSSFFLTQKFTP---QKNIITQEINKK---SPDLKEKL---------KKSQDEFIKI 110 F L L + +N + +++ +++ L + Sbjct: 90 FHALCVRILRRDADKIGYSRNFSIADSSEQVTLIKHIEKDLNINPKQYNPRAILSAISNA 149 Query: 111 RDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ K F++ + + Y++ ++ ++DF+DLI+ T L +K + Sbjct: 150 KNDLLNPKDFEAASGNRPFDQIVSEIYKEYQKRLGQDQIMDFDDLIMQTLVLFQKDKAT- 208 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + ++L+DE QDT+ Q+++ R L + + VGD QSIY Sbjct: 209 --LHYYQNKFRYLLVDEYQDTNEAQYQLCRLLAAQYS----------NVCVVGDGDQSIY 256 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA + +L ++ + + ++L ++RST IL+ + V +N + Sbjct: 257 GWRGANMENILNFEKDYKDK------GVHTVKLEQNYRSTGHILSAANAVIKNNQNRKSK 310 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW D + + + D A Sbjct: 311 R---------------------LW------TDQGSGEKITYYRAQSD--------VDEAI 335 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I+ + KD +L R + I Sbjct: 336 FVISKITEAVKAGKR---------DYKDFAILYRTNAQSRGFEESL----VKSNIPYQIV 382 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETV 466 D IKD++A + + + D +SF ++ P + K + V Sbjct: 383 GGHKFYDRKEIKDILAYLKLVANTSDSMSFNRIVNVPKRGIGAATVDKLLTFANERGIGV 442 Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFIS 519 + + K + + + AQ + IL Sbjct: 443 GDALSNLELVPVSAAASKKLADFNAKLVDCVAYAQDTSHTVTGLTEKILEDFGYTDALKK 502 Query: 520 RFGNE---VIDVLDEFLNFTLR----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 E ++ LDEFL T R E + SL E + + + N+V Sbjct: 503 EKTLESASRLENLDEFLTVTKRFDDNFEADDDESLPINDFLSEVTLLSDQDDIEDDGNQV 562 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFLV +F Sbjct: 563 TLMTLHAAKGLEFPVVFLVGMEDGIFPLS------------------------------- 591 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 L++ EE RL YVG+TRA ++L + + + K+ V + D Sbjct: 592 ---RAMLEEDQLEEERRLAYVGITRAREKLYLTNAFSRTMYGKTTSNPASRFVQEIKPED 648 Query: 693 ERVK 696 + Sbjct: 649 LETE 652 >gi|218248831|ref|YP_002374202.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801] gi|218169309|gb|ACK68046.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801] Length = 781 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 114/603 (18%), Positives = 197/603 (32%), Gaps = 103/603 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEE 139 KNI+T+++N + + + ++ + + S + + Y+ Sbjct: 164 KNIVTKQLNLDDKKFDPR--SVRYQISNAKNLGLSPDQYLQKNPSYKSRVIAEVYNEYQS 221 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 N LDF+DLI+ L ++ + I + HIL+DE QDT+ IQ+E+IR L Sbjct: 222 QLAANNALDFDDLILIPVRLFQQNES---ILGYWHSQFKHILVDEYQDTNQIQYELIRLL 278 Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + K+ + R++F VGD QSIYSF A+ +L + + + +++ Sbjct: 279 ATNGETKKSEWNWQNRSIFVVGDADQSIYSFRMADFTILLNFQSDFGDGLPDDDTR-TMV 337 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL + + T Sbjct: 338 KLEENYRSRENILEAANHLIENNSQRIDKILKPTR------------------------- 372 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 + F + I A+ + I ++ + + + Sbjct: 373 ----------GSGDFIYCYKADDEQIEAQLVIEHIQKLVRENP--------ELNWGSFAI 414 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + I F D IKD +A R I + D +S + Sbjct: 415 LYRINAQSRPFEDRL----IMNSIPYNIVGGFKFYDRQEIKDAIAYLRLIANPSDTVSLL 470 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------FANCGISKFQHVIKYIHEL 491 ++ +P + + I + E E ++E I A + I Sbjct: 471 RIINTPRRSIGKTSIESLLKAAQELEIPLWEIISDETSVNTLAGRAAKSVNKFAQMIKSF 530 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSL 547 S + ++ A + E + E N L+ E + SL Sbjct: 531 QEQLDSLSGAEILNQVMEASGYVDDLKQKGTEEADNRLANIFELYNAVLQFQEDSEDQSL 590 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 Q +S +V +MT+H+AKGLE PVVFLV + H Sbjct: 591 QGFLSNASLASDLD--DLKEGQEKVSLMTLHSAKGLEFPVVFLVGLEEGLLPHARSVSDP 648 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA +QL + Sbjct: 649 LS----------------------------------LEEERRLCYVGVTRAQEQLFLTYA 674 Query: 668 SNT 670 Sbjct: 675 RER 677 >gi|322391967|ref|ZP_08065431.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780] gi|321145193|gb|EFX40590.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780] Length = 763 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 101/589 (17%), Positives = 188/589 (31%), Gaps = 118/589 (20%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QDT Sbjct: 167 IVAKCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQDT 223 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 224 NHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP--- 270 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 ++ L ++RST IL + V +N + + Sbjct: 271 -----DAKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN-------------------- 305 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW + +Q + D + A +A TI + G+ Sbjct: 306 -LW-------TQNADGEQIVYYRANDEQDE-------AVFVAKTIDEL---------GRA 341 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 KD VL R + I I I+D++A I Sbjct: 342 HNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNLI 397 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQ 482 + D++S ++ P + KI + ++ + Sbjct: 398 ANLSDNISLERIINEPKRGIGPGTVEKIRDFANMQEMSMLDASANIMLSGIKGKVAQSIW 457 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I +L + +L ++ E ++ ++EFL+ T Sbjct: 458 DFANMILDLREQLDQLKITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKNF 517 Query: 540 E-----QNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDT 593 + Q + L +L L S +EV +MT+H AKGLE PVVF++ Sbjct: 518 DDNPESQEGETGLDKLSRFLNDLALIADTDSGSQETSEVTLMTLHAAKGLEFPVVFIIGM 577 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF EE RL YV Sbjct: 578 EENVFPLS----------------------------------RAAEDMDELEEERRLAYV 603 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 G+TRA L + ++ +++ + + + + + Sbjct: 604 GITRAEKILYLTNANSRLLFGRTSYNRPTRFINEISSDLLTYQGLARPA 652 >gi|159030780|emb|CAO88458.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 773 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 111/603 (18%), Positives = 196/603 (32%), Gaps = 103/603 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 KNI+T+++N + + ++ T + + + Y+ Sbjct: 160 KNIVTKQMNLDDKKFDAR--NLRYAISNAKNLGLTPGDYARENPHFRGKVISEVYQAYQM 217 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 +N LDF+DLI+ L ++ + I + HIL+DE QDT+ IQ+E+IR L Sbjct: 218 QLAQNNALDFDDLILVPVRLFQQNES---ILGYWHTQFKHILVDEYQDTNRIQYELIRLL 274 Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + + K+ + + R++F VGD QSIYSF A+ +L + + + +++ Sbjct: 275 STNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGDGLPDDDTR-TMV 333 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL +K+ T Sbjct: 334 KLQENYRSRENILQAANKLIEKNSQRIDKVLVPTR------------------------- 368 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 + D + A + I + + + Sbjct: 369 ---EGGEIIYVFKARDEQEE-------AAFVIDKIRE--------FTQENPELNWGSFAI 410 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + I F D IKD +A R I + D +S + Sbjct: 411 LYRINAQSRPFEDGL----IRNNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLL 466 Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHEL 491 ++ +P + I + E ++E I A + K I L Sbjct: 467 RIINTPRRGIGKTTIDNLLKAAQELGVPLWEIISDETSVNTLAGRATKSINRLAKIIQNL 526 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548 S + I+ + + E + + E + ++ ++ + + Sbjct: 527 QEKITDLSASEILDKIMEDSGYIDELKHQGTEEADTRIENIQELYSAVVQFQEENEET-- 584 Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 L L +V +MT+H+AKGLE P+VFLV +F H Sbjct: 585 NLQEFLASASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGIFPHNRSLNDP 644 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 I EE RL YVG+TRA +QL + Sbjct: 645 I----------------------------------ALEEERRLCYVGVTRAKEQLFLTYA 670 Query: 668 SNT 670 Sbjct: 671 KER 673 >gi|154506234|ref|ZP_02042972.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149] gi|153793733|gb|EDN76153.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149] Length = 744 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 103/554 (18%), Positives = 180/554 (32%), Gaps = 118/554 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + YE+ N LDF+DL++ T L + + + + +I++DE QDT+ Sbjct: 170 AKVYQEYEKQMHANNALDFDDLLVKTVQLFETQPD---VLENYQERFRYIMVDEYQDTNT 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q++++ L + R L VGD+ QSIY F GA K +L ++ Sbjct: 227 VQFQLVSLLAGKY----------RDLCVVGDDDQSIYKFRGANIKNILNFEQEFP----- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++I+L ++RST +IL + V S + QL Sbjct: 272 ---DATVIKLEQNYRSTGNILDAANAVISNNVGRKDK---------------------QL 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W ++ + + + A IA I + Sbjct: 308 W-------TDNGEGEKIKFCQFDTGYDE-------AEYIADDIEREVRNG---------- 343 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D +L R + L I IKD++A + I + Sbjct: 344 ASYNDHAILYRTNAQSRLFEERFVA----QNIPYKIVGGVNFYARREIKDVLAYLKTIDN 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHV 484 +DDL+ ++ P I +I Y+ + G +K + Sbjct: 400 GKDDLAVRRIINVPKRGIGLTTINRIQESAASRGIGFYDALLGLDLIPGVARGAAKLEGF 459 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 + I +A+ S D ++ + + E I+ +DE + E Sbjct: 460 VALIEYFKGVAETLSLSDLLQEVIDKTGYIESLEAEGKEESETRIENIDELRSKVAVYEE 519 Query: 541 ----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 Q+ +L + E+ + + V +MT+H+AKGLE P V+L Sbjct: 520 SCLDQDEKPTLSGFLEEVALVADID--SLDEEQDYVVLMTLHSAKGLEFPHVYLAGMEDG 577 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F + EE RL YVG+T Sbjct: 578 LFPSYMTVTS--------------------------------DDREDMEEERRLCYVGIT 605 Query: 657 RASDQLIICKHSNT 670 RA +L + Sbjct: 606 RAEQKLTMTSAMRR 619 >gi|296876758|ref|ZP_06900806.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 15912] gi|296432260|gb|EFH18059.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 15912] Length = 767 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 99/592 (16%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 172 QIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPD---VLTYYQQKFQYIHVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + + + Sbjct: 277 ------DAKVVLLEENYRSTKTILQAANDVIKNNRHRRPKN------------------- 311 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 312 --LW-------TQNEDGEEIVYYRANDEQDE-------AVFVAKTIEELSREA------- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +D VL R + I I I+D++A Sbjct: 349 --GYKHRDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVIAYLNL 402 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + + ++ + Sbjct: 403 IANLSDNISFERIINEPKRGIGPGTVDKIRDFAQMQEASLLDASANIMLSGIKGKAAQAI 462 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E I+ + EFL+ T Sbjct: 463 WDFANLILDLRERLDQLTITELVEEVLDKTGYMMALTNQGNLESQARIENIQEFLSVTKN 522 Query: 539 NEQNSY--------SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 ++N +L +++L T + +EV +MT+H AKGLE PVVFL Sbjct: 523 FDENGETVEDETGVETLSRFLNDLALIADTD--DGAQETSEVTLMTLHAAKGLEFPVVFL 580 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 581 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 606 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ +++ + + + + + Sbjct: 607 AYVGITRAEKVLFLTNANSRLLFGRTSYNRPTRFINEISSDLLTYQGLARPA 658 >gi|322375316|ref|ZP_08049829.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300] gi|321279579|gb|EFX56619.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300] Length = 763 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 192/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIVYYRANDEQDE-------AVFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQEMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREKLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVF+ Sbjct: 517 FDDNPDSQEEETGLDKLSHFLNDLALIADTDTGSQETSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ K+N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGKTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|270292792|ref|ZP_06199003.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143] gi|270278771|gb|EFA24617.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143] Length = 763 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 101/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST IL + V +N + + Sbjct: 272 -------AKVILLEENYRSTKTILQAANDVIKNNQNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 TQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREQLDQLTITELVEAVLEKTGYIDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVF+ Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ +++ + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTSYNRPTRFINEISSDLLDYQGLARPA 652 >gi|257061893|ref|YP_003139781.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802] gi|256592059|gb|ACV02946.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802] Length = 781 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 114/603 (18%), Positives = 197/603 (32%), Gaps = 103/603 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEE 139 KNI+T+++N + + + ++ + + S + + Y+ Sbjct: 164 KNIVTKQLNLDDKKFDPR--SVRYQISNAKNLGLSPDQYLQKNPSYKSRVIAEVYNEYQS 221 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 N LDF+DLI+ L ++ + I + HIL+DE QDT+ IQ+E+IR L Sbjct: 222 QLAANNALDFDDLILIPVRLFQQNES---ILGYWHSQFKHILVDEYQDTNQIQYELIRLL 278 Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + K+ + R++F VGD QSIYSF A+ +L + + + +++ Sbjct: 279 ATNGETKKSEWNWQNRSIFVVGDADQSIYSFRMADFTILLNFQSDFGDGLPDDDTR-TMV 337 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL + + T Sbjct: 338 KLEENYRSRENILEAANHLIENNSQRIDKILKPTR------------------------- 372 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 + F + I A+ + I ++ + + + Sbjct: 373 ----------GSGDFIYCYKADDEQIEAQLVIEHIQKLVRENP--------ELNWGSFAI 414 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + I F D IKD +A R I + D +S + Sbjct: 415 LYRINAQSRPFEDRL----IMNSIPYNIVGGFKFYDRQEIKDAIAYLRLIANPSDTVSLL 470 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------FANCGISKFQHVIKYIHEL 491 ++ +P + + I + E E ++E I A + I Sbjct: 471 RIINTPRRSIGKTSIDSLLKAAQELEIPLWEIISDETSVNTLAGRAAKSVNKFAQMIKSF 530 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSL 547 S + ++ A + E + E N L+ E + SL Sbjct: 531 QEQLDSLSGAEILNQVMEASGYVDDLKQKGTEEADNRLANIFELYNAVLQFQEDSEDQSL 590 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 Q +S +V +MT+H+AKGLE PVVFLV + H Sbjct: 591 QGFLSNASLASDLD--DLKEGQEKVSLMTLHSAKGLEFPVVFLVGLEEGLLPHARSVSDP 648 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA +QL + Sbjct: 649 LS----------------------------------LEEERRLCYVGVTRAQEQLFLTYA 674 Query: 668 SNT 670 Sbjct: 675 RER 677 >gi|307709461|ref|ZP_07645918.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564] gi|307619775|gb|EFN98894.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564] Length = 763 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 104/592 (17%), Positives = 194/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIVYYRANDELDE-------AVFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANVQDMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L S + +L + E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREQLDQLSITELVEEVLEKTGYIDILNVQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTSDVPEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF + EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDQDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|166367339|ref|YP_001659612.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843] gi|166089712|dbj|BAG04420.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843] Length = 773 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 111/603 (18%), Positives = 196/603 (32%), Gaps = 103/603 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 KNI+T+++N + + ++ T + + + Y+ Sbjct: 160 KNIVTKQMNLDDKKFDAR--NLRYAISNAKNLGLTPTDYARENPHFRGKVISEVYQAYQM 217 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 +N LDF+DLI+ L ++ + I + HIL+DE QDT+ IQ+E+IR L Sbjct: 218 QLAQNNALDFDDLILVPVRLFQQNES---ILGYWHTQFKHILVDEYQDTNRIQYELIRLL 274 Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + + K+ + + R++F VGD QSIYSF A+ +L + + + +++ Sbjct: 275 STNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGDGLPDDDTR-TMV 333 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL +K+ T Sbjct: 334 KLQENYRSRENILQAANKLIEKNSQRIDKVLVPTR------------------------- 368 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 + D + A + I + + + Sbjct: 369 ---EGGESIYVFKARDEQEE-------AAFVIDKIRE--------FTQENPELTWGSFAI 410 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + I F D IKD +A R I + D +S + Sbjct: 411 LYRINAQSRPFEDGL----IRNNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLL 466 Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHEL 491 ++ +P + I + E ++E I A + K I L Sbjct: 467 RIINTPRRGIGKTTIDNLLKAAQELGVPLWEIISDETSVNTLAGRATKSINKLAKIIQNL 526 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548 S + I+ + + E + + E + ++ ++ + + Sbjct: 527 QEKITDLSASEILDQIMEDSGYIDELKQQGTEEADTRIENIQELYSAVVQFQEENEET-- 584 Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 L L +V +MT+H+AKGLE P+VFLV +F H Sbjct: 585 NLQEFLASASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGIFPHNRSLNDP 644 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 I EE RL YVG+TRA +QL + Sbjct: 645 I----------------------------------ALEEERRLCYVGVTRAKEQLFLTYA 670 Query: 668 SNT 670 Sbjct: 671 KER 673 >gi|3024353|sp|P56255|PCRA_BACST RecName: Full=ATP-dependent DNA helicase pcrA gi|4930230|pdb|3PJR|A Chain A, Helicase Substrate Complex gi|15988533|pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp gi|157833507|pdb|1PJR|A Chain A, Structure Of Dna Helicase Length = 724 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 117/695 (16%), Positives = 225/695 (32%), Gaps = 137/695 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ Q+L + Sbjct: 32 GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWIST 91 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L + + + + I+ K + + L Sbjct: 92 FHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K +++ + + Y++ +N LDF+DLI+ T L + Sbjct: 152 KNELLPPEQFAK--RASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDR---V 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + +I IDE QDT+ Q+ +++ L E F + + AVGD QSI Sbjct: 207 PDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL ++V N + Sbjct: 257 YRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + + + + A Sbjct: 309 KRIW----------------------------TENPEGKPILYYEAMNEADE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I + + +D VL R + ++ + I Sbjct: 334 QFVAGRIREAVERGER---------RYRDFAVLYRTNAQSRVMEEML----LKANIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R I + +DDLS + ++ P I K+ + Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELS 440 Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E + + + + + ++ S + +L R+ + Sbjct: 441 LFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573 E + LDEFL+ T E + SL +++L +A + V Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELDGTEQAAEGDAVM 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ +F H + Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEE-------------------- 600 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 RL YVG+TRA ++L++ Sbjct: 601 --------------RRLAYVGITRAEEELVLTSAQ 621 >gi|312622478|ref|YP_004024091.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002] gi|312202945|gb|ADQ46272.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002] Length = 714 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 106/550 (19%), Positives = 182/550 (33%), Gaps = 114/550 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + K+ DF+DL+ T L + I K + +IL+DE QDT+ Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + L++ R + VGD+ QSIYSF GA K +L +++ Sbjct: 226 QFYFVYLLSQ----------KHRNICVVGDDDQSIYSFRGANIKNILEFEKVF------- 268 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST IL+ ++V + LW Sbjct: 269 -SDAKVIKLEKNYRSTKTILSAANEVIKNNNYRKFKK---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ S FD + + A +A ++ N+I + I Sbjct: 307 -------TDNIDGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------I 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I VL R + Y + + IKD++A R I + Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHVI 485 DDLS ++ P I K+ E T + F + I Sbjct: 399 HDDLSLFRIINVPRRGIGNSTIEKVKVLSEEYNVSAYTILLERAKFNFDKKTYERLNGFI 458 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 I +L A+ S L+L + +S E +++ ++ E+ Sbjct: 459 SLIEDLKAEAENLSVSAAIKLVLEKTGYLESLLSSKSEEEFQRAKNIEQLISTAAIFEEE 518 Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +LQ ++ + +V +MTVH AKGLE VVFL +F Sbjct: 519 NEEPTLQNFLNSITLSSEDEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ ++ YV +TRA Sbjct: 576 RAEEPIDAEKELEEERRL-------------------------------CYVAITRAKKL 604 Query: 662 LIICKHSNTS 671 L++ +N Sbjct: 605 LVLTYANNRR 614 >gi|322376782|ref|ZP_08051275.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334] gi|321282589|gb|EFX59596.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334] Length = 763 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 105/592 (17%), Positives = 194/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIVYYRANDELDE-------AVFVARTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEESL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKVAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREQLDHLSITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T +H + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTSDVSEEETGLDKLSRFLNDLALIADTDSGSHETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSELLEYQGLARPA 652 >gi|39935284|ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas palustris CGA009] gi|39649136|emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A) [Rhodopseudomonas palustris CGA009] Length = 1133 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 157/938 (16%), Positives = 304/938 (32%), Gaps = 91/938 (9%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + + + ++ ++ + +++ L + TQ + + Sbjct: 218 HAVDGLMEFIRTAPAVEEETAMLAERFAGMAAGLDSGPVIETPVGLVRLLVTQPHPDLCT 277 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 SF +K +E K+ L + + Sbjct: 278 KTGSFLAYKKKGKWVEAAKREGLAKTEGERLNIAADAHYAACCQAWQDLVQNVASRVLCD 337 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + + A + + K+ LDF+DLI DLL+ D +R + H+L+DE Sbjct: 338 LIAQVQPVLARFRDYKRSAAQLDFDDLIFAARDLLRDHDD---VRRSLATRFAHVLVDEF 394 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHS------SPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 QDT +Q E+ L + G + P LF VGD KQ+IY F GA+ +R Sbjct: 395 QDTDPLQTEIFWRLCGEPPAGVASADWSAFTIRPGALFLVGDPKQAIYRFRGADVSAYVR 454 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + + ++ + +FRS A ILT V+ F Sbjct: 455 ARDAYLAQDPES-----VLAISTNFRSCAPILTYVNDRFEAL-----------------L 492 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIG 358 S GQ G L + ++ C + + + E A IA + +IG Sbjct: 493 SSEGQPGFTALDPFHADRGEALCVAALDVAVADENGKASAEQQRDGEADAIAQMCARLIG 552 Query: 359 TDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + I +G R + DI +L D + I V L Sbjct: 553 GEMILDRRSGASRPCRPGDIALLAPTGSDLWRYEEALE----RHGIPVATQAGKGLFRRQ 608 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------I 470 I+DL+AL R + + D L+ +L+ PL +E+++ I E E Sbjct: 609 EIQDLIALTRVLADRRDTLALGALLRGPLVGLTEEELLDIIWALPRAEDDPERLPRLDLG 668 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--- 527 + + + I+ + L +PHD + + A + R + R + Sbjct: 669 VELEHIAHPLARSTIETLQALYRQTNSTTPHDLLSQAIDALRVRPILLERHRGQAERALA 728 Query: 528 VLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +D +L+ T + E + + ++ A V + T+H AKGLE P Sbjct: 729 NVDLYLSLTTSFAVRGLRAFAETMTAAWTDEARAVEGRPDAQEEAVALYTMHAAKGLEWP 788 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 +V ++T + + + + + D + P + K E Sbjct: 789 IVVPINTMTGIMAPESA--------VTDRDSDTFYCPVFGVKPVGYDAARDAEKAELDRE 840 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV TRA + L++ + ++ + + + + L++ + Sbjct: 841 RIRLWYVAATRARELLVLP--------RLDAAQSKSAWISLLDLSLAELPALDLSHLPPE 892 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + A + + +I +P +++ + +L P + Sbjct: 893 LDLAAGGEANDQTRDDFAAEAASIVARQRRL----IWLAPSRDESADGPVLTPEAAEIWA 948 Query: 767 KTNLESLLSD------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 + + RGLI+HKLL+ + T ++ Sbjct: 949 ASEAGQPDDEAVRPNVQGGRERGLILHKLLEEVLTGETPDDAGALSERARALIGEIGRPV 1008 Query: 821 Y---------KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ- 870 L + R L P + E++V ++ + G D Sbjct: 1009 MADPSQGLSPDELAGCVVRTLALPEIAEL-RPTLVPELAVYAAVDVDGVEQATVGIADAT 1067 Query: 871 -ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 I+ + + ++K+ + AQ+ Y Sbjct: 1068 SFDIAGKPTVVIDWKSDVQPT---AETLNHYRAQVRAY 1102 >gi|75909567|ref|YP_323863.1| ATP-dependent DNA helicase Rep [Anabaena variabilis ATCC 29413] gi|75703292|gb|ABA22968.1| ATP-dependent DNA helicase, Rep family [Anabaena variabilis ATCC 29413] Length = 772 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 109/618 (17%), Positives = 206/618 (33%), Gaps = 103/618 (16%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 K I+T+++N + + + +++ + + F+ + + + Y++ Sbjct: 158 KEIVTKQLNLDDKKFEPR--SVRYAISNAKNQGLSPQEFEKDQPNYRGRVIADVYNRYQD 215 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 +N LDF+DLI+ L ++ + + ++ HIL+DE QDT+ Q+++IR L Sbjct: 216 KLAENNALDFDDLILIPTRLFQQNE---QVLGYWHRKFCHILVDEYQDTNRTQYDLIRLL 272 Query: 200 TEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 T + K+ R++F VGD QSIYSF A+ +L + + + +++ Sbjct: 273 TTNGEERKSAWEWQNRSVFVVGDADQSIYSFRMADFTILLEFQNQFGDGLPDEDTR-TMV 331 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL V +++ +T Sbjct: 332 KLEENYRSCENILQVANELIENNTQRIDKVLKATR------------------------- 366 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 ++ + L + A + I + + + + Sbjct: 367 ---GAGEEIYCHKADNELEE-------ADFVIRQIRTL--------EHQNPELDWGSFAI 408 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + L +I D IKD++A R I + D +S + Sbjct: 409 LYRTNAQSRPFEE----LLVRNQIPYTVVGGMKFYDRKEIKDVIAYLRAIANPSDTVSLL 464 Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYIHEL 491 ++ +P + I + + T++E + A H + I+ Sbjct: 465 RVINTPRRGIGKATIDNLINASQQLGTTLWEILSDETSVNTLAGRSAKGVNHFAQMINRW 524 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-EQNSYSSL 547 + IL Q ++ +E D + E N L+ E+N SL Sbjct: 525 QEQITTAPVTEIVMGILEDSGYVQDLQNQGTDESEDRIQNVQELYNAVLQFQEENEDVSL 584 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + V +MT+H +KGLE PVVFLV +F Sbjct: 585 TAFLQSTALSSDLDN--LKEGQTAVSLMTLHASKGLEFPVVFLVGLEQGLFPGYRSLNDP 642 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA ++L + Sbjct: 643 ----------------------------------AALEEERRLCYVGITRAQERLYLSFA 668 Query: 668 SNTSNEKKSNQRTWYDMV 685 + Sbjct: 669 RERRLYGSREPAMRSQFL 686 >gi|300361106|ref|ZP_07057283.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03] gi|300353725|gb|EFJ69596.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03] Length = 757 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 131/760 (17%), Positives = 232/760 (30%), Gaps = 135/760 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 40 GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 99 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L + +D Sbjct: 100 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 159 Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K F ++ + + A Y+ K++ ++DF+DLI+ T L KK Sbjct: 160 KNDLLTPKDFKEQAASPFEKVTAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 216 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 217 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 266 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + Q + + I+L ++RST IL + V +N + Sbjct: 267 WRGANMENILNFEHDYQDD------EVNTIKLEQNYRSTGHILDAANSVIKNNQNRKPKK 320 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + ++ A + + Sbjct: 321 ---------------------LW-------TDKGDGDKINYYRA---QSGNDEALFIVSK 349 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I KD VL R + + I Sbjct: 350 INEEIKEHHRD-------------YKDFAVLYRTNAQSRNVEEAL----VKSNIPYRIVG 392 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A + + + D +SF ++ P + K ++ + E Sbjct: 393 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 452 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + I ++ S +L ++ + Sbjct: 453 ETFKNLSLAPITGRPAKTLAIFGTALKDAIEYSKTHSVTGLTEKLLADFGYKEALENEHT 512 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + L+EFL T R E ++L + +SE+ N+V Sbjct: 513 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 570 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 571 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 598 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 S EE RL YVG+TRA +L I + + + + + D Sbjct: 599 --RAASDPSELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDL 656 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 +NS + P R ET K+ Sbjct: 657 EFVNPVQSNSSMSIPFAKSSERATSQVYRPKTRIETAKKA 696 >gi|319745133|gb|EFV97457.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae ATCC 13813] Length = 766 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 122/774 (15%), Positives = 242/774 (31%), Gaps = 139/774 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61 G ++ L ++ + + V+ N + ++A L A+Q Sbjct: 35 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 94 Query: 62 ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107 E + + F Q+ ++ + I + + D + L + Sbjct: 95 HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 154 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D K + Y+E +++ +DF+DLI+ T L + Sbjct: 155 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 209 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 210 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 259 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL + V + +N + Sbjct: 260 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 311 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW +Q + + + A Sbjct: 312 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 336 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI N++ KD VL R + I I Sbjct: 337 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 383 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D++A + + D++SF ++ P + KI + ++ Sbjct: 384 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 443 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + I L + + +L + + Sbjct: 444 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 503 Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571 E I+ ++EFL+ T + + L L L + + E Sbjct: 504 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 563 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ VF Sbjct: 564 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 593 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA L + + + K++ + + Sbjct: 594 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 649 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + + + + + E T + L++ ++ + ++ +L + Sbjct: 650 LIQYQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 703 >gi|153854122|ref|ZP_01995430.1| hypothetical protein DORLON_01421 [Dorea longicatena DSM 13814] gi|149753171|gb|EDM63102.1| hypothetical protein DORLON_01421 [Dorea longicatena DSM 13814] Length = 682 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 118/664 (17%), Positives = 207/664 (31%), Gaps = 118/664 (17%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 L + Y+M S + YE+ + N LDF+DL+ T Sbjct: 72 ALLSEISKAKDELVTPQEYRMRAEGDYSRKKIAEVYEEYEKQLRSNNALDFDDLLFKTVQ 131 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 L + + + +I++DE QDT+ +Q+E+I L + R L Sbjct: 132 LFQT---QKDVLEYYQERFRYIMVDEYQDTNTVQFELIHLLASKY----------RNLCV 178 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD+ QSIY F GA K +L + + +I+L ++RST +IL + V Sbjct: 179 VGDDDQSIYKFRGANIKNILDFEHVFD--------DTKVIKLEQNYRSTGNILNAANAVI 230 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + + LW + + + Sbjct: 231 RNNHGRKEKT---------------------LW-------TENEDGNMIQFRQF------ 256 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 SA A +A I + + + KD VL R + + Sbjct: 257 -DSAYEEAEYVAGDIRRHVNKE---------LCSYKDNAVLYRTNAQSRMFEERF----V 302 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457 I IKDL+A + I + DDL+ ++ P I ++ Sbjct: 303 RDSIPYKVIGGVNFYARREIKDLLAYLKTIDNGRDDLAVRRIVNVPKRGIGLTSINRVQE 362 Query: 458 TQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 + Y+ ++ G +K + + I + Q S + ++ Sbjct: 363 YASSRECSFYDALRAVDLIPNIGRGQAKLESFVAMIEHFKNDVQDMSVSELMEEVIKETG 422 Query: 513 GRQQFISRFGNE----VIDVLDEFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKR 563 I +E I+ +DE N E QN S+L + ++ Sbjct: 423 YIDALIHECESEEATSRIENIDELRNKIAAYEENCETQNEASTLSGFLEDVALVADID-- 480 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + + + V +MT+H+AKGLE P V+L +F Sbjct: 481 SLDESTDYVVLMTLHSAKGLEFPHVYLAGMEDGLFPSYMT-------------------- 520 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 I + EE RL YVG+TRA L + ++ + Sbjct: 521 ------------ITADDPAELEEERRLCYVGITRAEKDLTLTCARKRMVHGETQYKKMSR 568 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 + + + E + + S + + T + + + PK Sbjct: 569 FLKEIPLELLETGPSTKKEKKEESEPVRVKTSFMQAKEAFKTKAFTAPKPVQQFGTPKGG 628 Query: 744 FSPI 747 P Sbjct: 629 KLPY 632 >gi|222529276|ref|YP_002573158.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725] gi|222456123|gb|ACM60385.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725] Length = 714 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 106/550 (19%), Positives = 180/550 (32%), Gaps = 114/550 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + K+ DF+DL+ T L + I K + +IL+DE QDT+ Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNRA 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I L++ R + VGD+ QSIYSF GA K +L +++ Sbjct: 226 QFYFIYLLSQ----------KHRNVCVVGDDDQSIYSFRGANIKNILEFEKVF------- 268 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST IL+ ++V + LW Sbjct: 269 -SDAKVIKLEKNYRSTKIILSAANEVIKNNNYRKFKK---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ S FD + + A +A ++ N+I + I Sbjct: 307 -------TDNIDGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------I 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I VL R + Y + + IKD++A R I + Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------TVYEYIQKFANCGISKFQHVI 485 DDLS ++ P + KI E + F K Sbjct: 399 HDDLSLFRIINVPRRGIGNSTLEKIKVLSEEYGVSAYTVLLERAKIDFDKKIYEKLNRFT 458 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 I +L A+ S L+L + +S E +++ ++ E+ Sbjct: 459 LLIEDLKAEAENLSVTQTIKLVLDKTGYLESLLSSKSEEEFQRAKNIEQLISTAAIFEEE 518 Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +LQ ++ + +V +MTVH AKGLE VVFL +F Sbjct: 519 NEEPTLQNFLNSITLSSEDEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ ++ YV +TRA Sbjct: 576 RAEEPIDAEKELEEERRL-------------------------------CYVAITRAKKL 604 Query: 662 LIICKHSNTS 671 L++ +N Sbjct: 605 LVLTYANNRR 614 >gi|289168033|ref|YP_003446302.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6] gi|288907600|emb|CBJ22437.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6] Length = 763 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 194/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIVYYRANDELDE-------AVFVARTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQKFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTSDGPEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|302519556|ref|ZP_07271898.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78] gi|302428451|gb|EFL00267.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78] Length = 829 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 122/756 (16%), Positives = 237/756 (31%), Gaps = 129/756 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P S + + + + + + Sbjct: 130 AAGEMKERVEQLVGPRAGAMWVSTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 184 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + K +LK +L + + + ++ A Sbjct: 185 RLMALVCRDLDLDP-KRFPPKSFTAKISNLKNELIDA--------EAYADEVAGEAAGAF 235 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 236 EKTLSQAYTMYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 292 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DT+ Q+ +++ L G P L VGD QSIY+F GA + +L+ + Sbjct: 293 DTNHAQYTLVKELVGPSDGGTGYDGGPAPEPAELCVVGDADQSIYAFRGATIRNILQFEE 352 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I L ++RST IL+ + V EN + + Sbjct: 353 DYPN--------AKTILLEQNYRSTQTILSAANAVIERNENRRPKN-------------- 390 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 LW ++ P+ + + + A+ +A I + Sbjct: 391 -------LW------TEAGNGPKITGYVADTEHDE--------AQFVADEIDRLTDAG-- 427 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + D+ V R + + + + + ++D++ Sbjct: 428 -------DAKPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERREVRDVL 476 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FAN 475 A R + + ED + +L P E I + E T + +Q+ A Sbjct: 477 AYLRVLANPEDSVPLRRILNVPKRGIGERSEAMIDALSQRERITFPQALQRVDEAYGMAA 536 Query: 476 CGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 + + + EL I + + P +L + + + I+ L E Sbjct: 537 RSANAIKRFNTLMEELRTIVESGAGPAVVLEAVLEQTGYLAELQASTDPQDETRIENLQE 596 Query: 532 FLNFTLRNEQNSYS-----SLQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLES 585 + L EQ +L E + ++ + + + + V +MT+HTAKGLE Sbjct: 597 LASVALEFEQERSDEEGTGTLAEFLEKVALVADSDQIPDEEDGDGVITLMTLHTAKGLEF 656 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVVFL VF H + E Sbjct: 657 PVVFLSGMEDGVFPHMRALG----------------------------------QVKELE 682 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YVG+TRA ++L + + + S + + + + K+ + Sbjct: 683 EERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPPSRFLEEIPADHLEWKRTGAAPAKV 742 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 A ++ + +E+ + Sbjct: 743 AAGPAAGIAASLSSSRARRGAPAFATRRAEEKPVVA 778 >gi|318058788|ref|ZP_07977511.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actG] gi|318075472|ref|ZP_07982804.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actF] Length = 829 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 122/756 (16%), Positives = 237/756 (31%), Gaps = 129/756 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P S + + + + + + Sbjct: 130 AAGEMKERVEQLVGPRAGAMWVSTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 184 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + K +LK +L + + + ++ A Sbjct: 185 RLMALVCRDLDLDP-KRFPPKSFTAKISNLKNELIDA--------EAYADEVAGEAAGAF 235 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 236 EKTLSQAYTMYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 292 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DT+ Q+ +++ L G P L VGD QSIY+F GA + +L+ + Sbjct: 293 DTNHAQYTLVKELVGPSDGGTGYDGGPAPEPAELCVVGDADQSIYAFRGATIRNILQFEE 352 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I L ++RST IL+ + V EN + + Sbjct: 353 DYPN--------AKTILLEQNYRSTQTILSAANAVIERNENRRPKN-------------- 390 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 LW ++ P+ + + + A+ +A I + Sbjct: 391 -------LW------TEAGNGPKITGYVADTEHDE--------AQFVADEIDRLTDAG-- 427 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + D+ V R + + + + + ++D++ Sbjct: 428 -------DAKPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERREVRDVL 476 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FAN 475 A R + + ED + +L P E I + E T + +Q+ A Sbjct: 477 AYLRVLANPEDSVPLRRILNVPKRGIGERSEAMIDALSQRERITFPQALQRVDEAYGMAA 536 Query: 476 CGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 + + + EL I + + P +L + + + I+ L E Sbjct: 537 RSANAIKRFNTLMEELRTIVESGAGPAVVLEAVLEQTGYLAELQASTDPQDETRIENLQE 596 Query: 532 FLNFTLRNEQNSYS-----SLQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLES 585 + L EQ +L E + ++ + + + + V +MT+HTAKGLE Sbjct: 597 LASVALEFEQERSDEEGTGTLAEFLEKVALVADSDQIPDEEDGDGVITLMTLHTAKGLEF 656 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVVFL VF H + E Sbjct: 657 PVVFLSGMEDGVFPHMRALG----------------------------------QVKELE 682 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YVG+TRA ++L + + + S + + + + K+ + Sbjct: 683 EERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPPSRFLEEIPADHLEWKRTGAAPAKV 742 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 A ++ + +E+ + Sbjct: 743 AAGPAAGIAASLSSSRARRGAPAFATRRAEEKPVVA 778 >gi|307703485|ref|ZP_07640427.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] gi|307622892|gb|EFO01887.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] Length = 739 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 101/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 306 --LW-------TQNPDGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRGFANMQDMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREKLDQLTITELVEAVLEKTGYIDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVF+ Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLIEYQGLARPA 652 >gi|306829578|ref|ZP_07462768.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249] gi|304428664|gb|EFM31754.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249] Length = 763 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 101/592 (17%), Positives = 193/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQEMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L S + +L + ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREQLDQLSITELVEAVLEKTGYVEILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVF+ Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ +++ + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTSYNRPTRFINEISSDLLEYQGLARPA 652 >gi|320535504|ref|ZP_08035607.1| UvrD/REP helicase [Treponema phagedenis F0421] gi|320147643|gb|EFW39156.1| UvrD/REP helicase [Treponema phagedenis F0421] Length = 1138 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 152/941 (16%), Positives = 307/941 (32%), Gaps = 105/941 (11%) Query: 58 QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-IRDRFNT 116 E L F+ + N+ E + ++ + + + Sbjct: 241 SGDDCAEYLHKLEQLFVIKGNLGGSNLAAAECRSIIK------NEIRERIYPKLLNSYAL 294 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 L + + A Y + KK+ L++ D+ + D+L IR+ Q+ Sbjct: 295 LGHQADIEELFKLFEEIQAEYIQKKKETGTLNYGDVAMLARDVLLHYPD---IRHFYKQD 351 Query: 177 INHILIDEVQDTSLIQWEVIRSLTED-----FFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 I+ I+IDE QD +++Q E++ L E + + S LF VGDEKQSIY+F G Sbjct: 352 ISAIMIDEFQDNNILQKELLYLLAERENWETPAIPASEELSEGKLFFVGDEKQSIYAFRG 411 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS------IPENAQ 285 A+ + + A L ++R+ +L +++FS + Sbjct: 412 ADVAVFRQLSYDLHADSYRAKT-----SLDTNYRTETGLLDFFNRIFSLVFYSHRNKPDS 466 Query: 286 GLSEDSTTTIRHRSSRIGQVGT--------VQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 G+ + G V Q + + Sbjct: 467 GIVPTFEAEFFPIGTARHTEGVEPKIELFGVDKHRLENYQRFEDTLDDLDDLDGSSEGSE 526 Query: 338 QE------SSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLI 389 + + A R++ I + T + K R + D +L+R + + Sbjct: 527 EAGTTLYLTPREAEAFRLSKRIKELYEDKTPVRHKDEKARPCRWADFAILMRATTNQQIF 586 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 R I + L I D+ AL + L D S+ +L+SP + Sbjct: 587 ERFLRAE----GIPYRSVQQKGLFFDAPINDIYALLQLALLPSDRQSYAQVLRSPFVHLD 642 Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 + I E + + + ++F + + + S + T + Sbjct: 643 DKSFTIIMLNNAEPFS-ADMDSLLEDEARNRFAQGRALYDRVQNYLKSYSNAELVTKLWY 701 Query: 510 AKKGRQQFISRFGNEVIDVL-DEFLNFTLRNEQNSYSSLQELISELEQYPP------TIK 562 + R ++ L D F ++ + + + ++ + Y ++ Sbjct: 702 DEAYRYILLTNPEYHSYLDLYDYFFEAARLADEQHIA-ISDFVANIRSYAENLEKPDEME 760 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 +++ V+IM+VH +KGLE P+V + + K K + + +P Sbjct: 761 IPFEGDNDAVQIMSVHKSKGLEFPIVCIPSCDYKGIPIKKDGKFYFSDEYSVAMHLPPVK 820 Query: 623 P-QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679 + N +++ + L + E RLLYV +TRA +LII + ++ Sbjct: 821 GFEGNPENIFYTEMKEELGQKQVAEAKRLLYVALTRAECRLIISGTLPIAAKEDQYTENV 880 Query: 680 -TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-----ENTPLEREETIKQ- 732 ++ + F + S+ + P E P+ER+ Q Sbjct: 881 QRSFEEIKKFFTEQNPNSSTRSFFSLLLSAIANDILAEKEPVFSFEEILPIERKTVTSQI 940 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ-----------TFN 781 + ++ ++ P T T + + + Q + Sbjct: 941 PQSRKTDYAAVYRKLQIKPAHRLTEKPVTAVTGLEKDSRWTNAREQEPPAMSGSDLSAAD 1000 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841 G + HK I +Y + P K K + + + A+ Sbjct: 1001 IGSLAHK---------------AIEAYFLQRDISIPEKLKKEIHTMRDTFFNSELGKKAL 1045 Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901 + ++ +++G+ID + + I+I +YKT + P H Sbjct: 1046 AAQLRK---TEYGFITRLENKLVAGQIDLLFEADNCIYIVDYKTDSVIN------PENHR 1096 Query: 902 AQLSIYEKILKDS-----YPNKSLVCLLIYVSEPKVFIIPQ 937 QL +Y+K + D K + +L Y+ + + + Sbjct: 1097 LQLQVYKKAVDDLCRIKHAEQKPIRLVLFYLRHAQAVEVTE 1137 >gi|307298415|ref|ZP_07578218.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915580|gb|EFN45964.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] Length = 969 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 144/845 (17%), Positives = 285/845 (33%), Gaps = 80/845 (9%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + + + + + Y + ++ LDF+ L+ T DLL K ++ K Sbjct: 186 IIEGSKSFAAAYSEILSDYRDRTVRSGFLDFDQLLTETRDLLLK---MPEVQEKYRDRFK 242 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 I +DE QDT +Q E+IR L E+ S +F VGD KQSIY F GA+ Sbjct: 243 FIFVDEFQDTDELQSEIIRLLREE---------SKNRVFFVGDSKQSIYRFRGADVSVFN 293 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + + Q + L ++ RS D++T +K+F +E Sbjct: 294 KTMKSFQN------NGGELRNLRINRRSHPDLVTFQNKLFGKIMKRDFENEF-------- 339 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 R ++ ES + +AR + I + Sbjct: 340 -FRSIYDEDIESLPY---------QRDIESSRVRIIRTESSDDSREVARSVRALIEEELV 389 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T +KR I DI +L+R L I + + Sbjct: 390 FKTKTGEYEKRRIVPGDIAILLRTFSKISSYENALEKL----NIPFYTVGSRNFYEQPEV 445 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 L++ ++ D+ + V L SP F S D++ + ++R Sbjct: 446 SGLLSWLDLLVDPLDNNNLVSFLLSPAFGASLDEVLTLRSKR--DLRRLPLYFALMESKE 503 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTL 537 +F H+I + + + SP + + + + E + + + L Sbjct: 504 DRFAHLIDLLKKFGKLKYILSPSEILEKFVQETDYLPKLATLKSGERMIANVKKLLELAK 563 Query: 538 RNEQNSYSSLQEL----ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ SSL+EL + ++ + + + V+I+TVH +KGLE P+V + DT Sbjct: 564 DLDRMG-SSLRELSSNIKAFIDSSDESEAALETEESDSVKILTVHKSKGLEFPIVIVGDT 622 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + + D G I + ++ L ++ EE R LYV Sbjct: 623 FWKKKNSDRRL-------FFHDGGFLISKSKPDREEGLIGSLASLEEEKEFEEEKRTLYV 675 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 ++RA + +II + + + + ++ ++ ++V+ + Sbjct: 676 ALSRAREMIIISLNGRSDSSRPWSKMICSSLLQ---SESDKVEASFEGIVKHFYPIDLPS 732 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 PL E T + + K L +E + + S + G Sbjct: 733 IQETVYIEEPLLPEVTSVLPLTDSSYIKYLSPTSITADDEFELQSESYAGSPGLVK---- 788 Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY---KNLLLSITR 830 GL+ H LL+ + + + + S + + L + + Sbjct: 789 ----NAAGIGLLAHYLLEPVGVISKRGSVTTLESILN-GGRPVSVDRINFNEYDLSEVKK 843 Query: 831 LLENPMMTTAMSCDSYSEVSV-SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 +L + + +E ++ G +D++ + I ++K Sbjct: 844 VLSTLVAHPLIKEIEGAERVFSEFHFQHGFGKYVLMGIVDKLYLKDGKWRIVDFKFASLN 903 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII---PQNKLNKAFAE 946 + Q+++Y ILKD + L+++ + K I + K + Sbjct: 904 K----RFINKYRFQMNLYLYILKDLLS--PIEATLLFLRDGKTEKIMLEDSDSFEKELLQ 957 Query: 947 ISTKI 951 + +K Sbjct: 958 MISKA 962 >gi|77412397|ref|ZP_00788706.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111] gi|77161557|gb|EAO72559.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111] Length = 759 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 121/774 (15%), Positives = 243/774 (31%), Gaps = 139/774 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61 G ++ L ++ + + V+ N + ++A L A+Q Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87 Query: 62 ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107 E + + F Q+ ++ + I + + D + L + Sbjct: 88 HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + + K + Y+E +++ +DF+DLI+ T L + Sbjct: 148 NDLLNEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL + V + +N + Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW +Q + + + A Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI N++ KD VL R + I I Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D++A + + D++SF ++ P + KI ++ ++ Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQSMSL 436 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + I L + + +L + + Sbjct: 437 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496 Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571 E I+ ++EFL+ T + + L L L + + E Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ VF Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA L + + + K++ + + Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + + + + + E T + L++ ++ + ++ +L + Sbjct: 643 LIQYQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 696 >gi|72383505|ref|YP_292860.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str. NATL2A] gi|72003355|gb|AAZ59157.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus str. NATL2A] Length = 805 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 116/642 (18%), Positives = 221/642 (34%), Gaps = 103/642 (16%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L Y +A N LDF+DL++ LL++ + IR H+L+DE QD Sbjct: 207 KLVAETYRLYRKALAANNALDFDDLLLIPVQLLQQNE---KIRTYWHSRFKHVLVDEYQD 263 Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+E+I+ L + + + R++F VGD QSIYSF A+ + ++ + K Sbjct: 264 TNWTQYELIKQLVTNGKDPSSFQDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGK 323 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 ++ + ++++L ++RST+ IL + + S + +T Sbjct: 324 KSLDNKYDSTLVKLEENYRSTSTILEAANSLISNNKERIDKVLRATR------------- 370 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 + T D + + A + + + + + Sbjct: 371 ---------------GEGEPIRLTRCDDEIAE-------AEAVIHRLRIL--------DA 400 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D+ +L R + I + I + D IKDL+A R Sbjct: 401 SNPELNWGDMAILYRTNAQSRAIEDSL----VRWSIPYIVVGGLRFYDRREIKDLLAYLR 456 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479 +++ D +S + +L P + + ++ + ++ E ++ A Sbjct: 457 LLINPSDSVSLLRVLNVPKRGIGKTTVQRLSDAASQLKIPLWEVVNDPEAVRSLAGRSAK 516 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536 + I+EL SP + L+L + I+ E L E +N Sbjct: 517 GLLIFSELINELQSHLLSSSPAELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAA 576 Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L+ E++ ++L+ +S + N V +MT+H++KGLE PVV LV Sbjct: 577 LQYQEESEDANLEGFLSTAALSSDADNKD--TASNRVTLMTLHSSKGLEFPVVCLVGMEQ 634 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + EE RL YVG+ Sbjct: 635 GLFPSYRSLDDPS----------------------------------SLEEERRLCYVGL 660 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++L + S + + + I L+ + Sbjct: 661 TRAKEKLFLFHASERRMWGGMREPAIASIFLSEIPEELVKGDIPLSGGATLRREKNLDRL 720 Query: 716 THHPE-----NTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 T + P E E +++ K+ + + + Sbjct: 721 TRIDRQSNKKSFPSEAENAVRKTYSGPSPGKRWSVNDRVEHS 762 >gi|227832527|ref|YP_002834234.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|262183605|ref|ZP_06043026.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453543|gb|ACP32296.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 1070 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 159/1026 (15%), Positives = 303/1026 (29%), Gaps = 184/1026 (17%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSL--SMETGNPTILKKAQTLQQASQTQCIEE 64 + N + + + + VS+ +S ++ T T+LK A+T+ + + ++ Sbjct: 138 VEPNARIIT-EAERYAIAHEVVSNYTGSLSTDSAVATVTATLLKLAETMDG--ELKDPQD 194 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 + F +K+ T+ + DL++ L + + Sbjct: 195 LYEH-EDIFRKTAEDLEKSKRTKG--EFGKDLQKYLDTQRLRLEYL-------------- 237 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 L ++ + + V+ F + + L K + + I++DE Sbjct: 238 -------PLVEALKKEQSERGVITFGEQMSIAATLAKNFPLLG---EQQSARYRVIMLDE 287 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDTS Q ++RSL G + + AVGD QSIY + GA + + Sbjct: 288 YQDTSHAQRILLRSLFGGEREGLS-------VTAVGDPMQSIYGWRGATAENLEAFVTDF 340 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + G +L S+R+ + +L++ + V S LS Sbjct: 341 PQ---PDGTPAPKDQLTTSWRNPSTVLSLANDVASKL---FSLSPGERPVDELSPKPTAP 394 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 G V+L + IA + + + Sbjct: 395 AGKVELGYFASEDEER--------------------------AFIAEHLRRLYESTPEGE 428 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + VLVR + +PLI + + L I+DL+A+ Sbjct: 429 DFSA--------AVLVRTNRQSPLIAAALDEV----GVPNEIFGLGGLLWQPEIQDLVAV 476 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE---------------- 468 ++ +D + + +L P+ DI + +++ E Sbjct: 477 ATLLVRPQDTAAALRVLTGPMCGLGIADIQALHSRQRNLAGATEGRTRWNGGDPLDHLAT 536 Query: 469 ------------------------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 +++ G+ + + V + L + + +D Sbjct: 537 QVEEITAEGPDQVLGLADALADLGERDRYSAEGLERMEEVSSKLRYLRTYSLGKTLNDIV 596 Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564 I R + ++ LD F +F L L+ LE Sbjct: 597 ADIELLFGLRTEVLASGKPGRATHLDAFADFVAGF---HGDGLAGLLDYLELAKEKEDGL 653 Query: 565 HSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK---HIKKMHIMPSLNDDPG 617 N V+IMTVH AKGLE V +V S + + + K+ P D Sbjct: 654 ELGEVPLVRNRVQIMTVHKAKGLEWEHVCVVHADSSSYKAQAETFLTKIEKAPGDEDVID 713 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 +P + + + ++ EE RL YV MTR L + + KS Sbjct: 714 VPEDAVTRSDFDKACTAFKEQNREFQAEEAARLFYVAMTRTESTLTVTGSGTNRLKGKSK 773 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + + + + + E V + + ++E A + S P Sbjct: 774 KGPYSYLQLLADKHPELVGHWDIPETPVEEEEGSALQASFPSLSPQPEALNAAEAVRAAM 833 Query: 737 QKIPK---------------------KLFSPIKNDINEPYILNPSTI--------DTKGK 767 + +P K D+ P L S + + Sbjct: 834 EDLPPLRDGEVFGLWEQEASALIEEHKALQAPVVDVELPGELTASDMVAMSADPTQFARR 893 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 N RG H L+ F P + ++ E + L S Sbjct: 894 QRRPIPFKPNSYAKRGTAFHAWLEDRFGAP---------ALLGEDELPGSHDEPDHDLES 944 Query: 828 I-TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKT 885 + L + + V D ++ GR+D + I ++KT Sbjct: 945 LKESFLASEWAQ-------RTPAFVEAPFEITIGDSVVRGRMDAVFQQPDGSWLIVDWKT 997 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945 QL++Y + + + ++ YV E + A Sbjct: 998 GRRPQGAALASA---QIQLAVYAEAWRRIHGVDTVRAAFYYVYENYLLEPDDLPAGARLA 1054 Query: 946 EISTKI 951 E+ + Sbjct: 1055 ELLSSA 1060 >gi|158334598|ref|YP_001515770.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017] gi|158304839|gb|ABW26456.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017] Length = 780 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 114/735 (15%), Positives = 226/735 (30%), Gaps = 129/735 (17%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERF 66 + E E I K + ++E P K + + F Sbjct: 67 AAREMKERIEKLFAEQLAQ------QDHGKALELLAPQQQTKLRSQVYKTITKPLWIGTF 120 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKE----------------------KLKKSQ 104 L + L + ++ ++ + E + + + Sbjct: 121 HSLCARLLRMEIEKYQDEKGRKWQRNFSIFDESDVQSLIKDIVVNQLNLDDRKFQPRSVR 180 Query: 105 DEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 +++ + ++ + + + Y+++ N LDF+DLI LLK+ Sbjct: 181 FAISNAKNQGWNPQELEANQQDFRGRVVAQVYSKYQDSLAANNGLDFDDLIRVLVQLLKQ 240 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGD 221 + Q+ H+L+DE QDT+ Q++++R L + +N R++F VGD Sbjct: 241 NG---QVLGYWHQQFRHMLVDEYQDTNRTQYDLLRLLATNGTDTRNFKDWEHRSVFVVGD 297 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 QSIYSF A+ K ++ ++ + + ++++L ++RST +IL V +++ Sbjct: 298 ADQSIYSFRAADFKILMGFQQDFGDGLPDGDTR-TMVKLEENYRSTENILQVANELIDNN 356 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 T + D L + Sbjct: 357 TERIDKILKPTR----------------------------GAGEPIYCYRADDELHESD- 387 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + I + + D +L R + + Sbjct: 388 ------FVIQQIRTL--------EQSHPELSWGDFAILYRTNAQSRAFEEGL----VRWS 429 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 I D IKD++A R I++ D +S ++ +P + + ++ Sbjct: 430 IPYTVVGGLKFYDRREIKDVLAYLRLIVNPADTVSLKRVINTPRRGIGKTTLDRLMNAAQ 489 Query: 462 E-TETVYE------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 E ++E ++ A ++ + + S + IL Sbjct: 490 ELGVPLWEMLTEETAVKTLAARSAKPILQFVEMMRHWQGQVETQSAANIIQGILEDSGYV 549 Query: 515 QQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + ++ +E D + E N L+ + + + L S L Sbjct: 550 RDLKNQGTDEADDRIGNVQELQNAALQYAEENTD--ESLPSFLANTALASDLDDLDEKTT 607 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE P+VFLV +F + Sbjct: 608 VSLMTLHAAKGLEFPIVFLVGLEQGLFPN------------------------------- 636 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + EE RL YVG+TRA ++L I + + + Sbjct: 637 ---FRSLEDPAAIEEERRLCYVGVTRAQERLFISHARERRLYGSREPAMPSLFLSELPRD 693 Query: 692 DERVKKIKLTNSINK 706 + + S Sbjct: 694 LLQTNSLSAIPSEPP 708 >gi|322387882|ref|ZP_08061489.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC 700779] gi|321141155|gb|EFX36653.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC 700779] Length = 762 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 102/591 (17%), Positives = 192/591 (32%), Gaps = 122/591 (20%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QDT Sbjct: 167 IVAKCYDAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQDT 223 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 224 NHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ-- 271 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 ++ L ++RST IL + V +N + + Sbjct: 272 ------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN-------------------- 305 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW + +Q + D + A +A TI + G+ Sbjct: 306 -LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GRN 341 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + KD VL R + I I I+D++A I Sbjct: 342 QNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNLI 397 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQ 482 + D++SF ++ P + KI + ++ + Sbjct: 398 ANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQEMSMLDASANIMLSGIKGKAAQSIW 457 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I +L + + +L ++ E ++ ++EFL+ T Sbjct: 458 DFANMILDLREQLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKNF 517 Query: 540 --------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 E+ L +++L T + + V +MT+H AKGLE PVVF++ Sbjct: 518 DDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFII 575 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 VF EE RL Sbjct: 576 GMEENVFPLS----------------------------------RASEDPDELEEERRLA 601 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ K+N + + + + + Sbjct: 602 YVGITRAEKILYLTNANSRLLFGKTNYNRPTRFINEISSDLLTYQGLARPA 652 >gi|188586470|ref|YP_001918015.1| recombination helicase AddA [Natranaerobius thermophilus JW/NM-WN-LF] gi|251764535|sp|B2A610|ADDA_NATTJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|179351157|gb|ACB85427.1| recombination helicase AddA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1282 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 138/731 (18%), Positives = 262/731 (35%), Gaps = 52/731 (7%) Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 FS L S +++ +KL ++ K + ++ Sbjct: 294 FSKLPSVSKNDDVDEDLKKDCKKLRDHGKKTFQKLVQNYFTRSKDELLRDLQQLSPLMNK 353 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + ++ YEE KK+ ++DF DL +LL + I ++ Q + +++DE Sbjct: 354 LIDMVINMDDKYEEVKKQRGIMDFSDLEHYVYELLDQYPE---IVSELHQRYDEVMVDEY 410 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QD + +Q ++ LT S LF VGD KQSIY F AEP+ L + Sbjct: 411 QDINQVQNAILEKLT-------GQQSISPDLFMVGDVKQSIYRFRLAEPELFLNKYDTFD 463 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 +R+ + S+IEL +FRS+ +L V+ +FS + ++ + Sbjct: 464 QRSE----EGSLIELQENFRSSPMVLESVNYLFSRIMTGSLSGIEYNEKVKLIPASK--- 516 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ------------ESSASILARRIAYTI 353 +L+ D + Q E+ D + E A+ IA TI Sbjct: 517 -PRELYLNEDDNEDDKYEGQAENENQVIDGRTEVHLLENKDTNSREEDTEREAQLIATTI 575 Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 ++++ + + R + D ++L RK K+ L + ++ + + Sbjct: 576 NSLVEEEYRIYDRDLDDYRKLDYSDFVILSRKTKEQA---ELVTNVFQEHGVPLYAELDT 632 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--- 467 ++ +++L + I + D+ +L+SPL +++ +I T+ Sbjct: 633 GYFAAQEVQVMLSLLKIIDNPRQDIPLAGVLRSPLVGLDSNELVEIRRSNPGTDYYEACK 692 Query: 468 -------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS- 519 E + + I K Q + I++ S + I Sbjct: 693 RVLTNSIEQQNQCSEKTIQKMQKFFSQLERWRRISRERSLAELIWDIYQITDYLDYVAGF 752 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRI 574 G E L F + L+ + S+S L + ++ +E+ R S N N VR+ Sbjct: 753 PGGRERQANLWSFYDRALQFDSFSHSGLVKFLNFIEKLVEQDFDLGKARTVSENENVVRL 812 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 M++H +KGLE PVVF++ G+ + + + L P + + K Sbjct: 813 MSIHKSKGLEFPVVFVMGLGNNFNFNDQKGDLLLHKDLGLGPKLVDLTNRIKYPTIAHQA 872 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + L + T E R+LYV MTRA ++L + K S + Sbjct: 873 IKGSLGRETLAEEMRILYVAMTRAEEKLFLVGSGKDIESKISVPEEPAAAQNYLDWIYPQ 932 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 + + ++ + N E + Q + ++ + Sbjct: 933 LGEDSELFHKIWNDIPGQQDGKSVEYNWKSYFESLLSQTFTWEVDQEEFEDQKRTLEQAI 992 Query: 755 YILNPSTIDTK 765 P I T+ Sbjct: 993 SYSYPYNIATE 1003 Score = 95.8 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 30/274 (10%), Positives = 76/274 (27%), Gaps = 49/274 (17%) Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 + K S + ++ + + +++ + D K P+ + E N Sbjct: 1005 VGKMSVTDLAKSDTYIDSKIVSQNQSLSSVQDHYKKLAATQIPMFLETTEDAGDNKYESY 1064 Query: 764 TKGKTNLESLL-----SDNQTFNRGLIIHKLLQVIF--------TLPEHKRKNFITSYCT 810 + T + S G IH Q + E + N + Sbjct: 1065 KEHHTPSKRPEFLKSNSGLTGAEAGTSIHLAFQHLPINSDLNSQEFSEEQISNQLDDLVN 1124 Query: 811 KNAKLWPAKEYKNLLLS-ITRLLENPMMTTAMSC--DSYSEVSVSGKINC---------- 857 K + + + I + ++ + + E+ + + Sbjct: 1125 KE--IITQAQRDVISEDLIMKFFQSELGQAILERPKGLKRELPFTLGVPAWEMLAGSEEC 1182 Query: 858 -----------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899 + ++I G ID + N ++ ++KT ++ I Sbjct: 1183 QAELEAENIETTELQGLSDETVVIQGVIDYLFWDGTNYYLIDFKTDKLNTSNMDEIEKRL 1242 Query: 900 ---HIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 + Q+ +Y + + + + L +V Sbjct: 1243 QGKYRMQIQMYLRAITEIFNITPTKAYLYHVPTG 1276 >gi|284053307|ref|ZP_06383517.1| ATP-dependent DNA helicase Rep [Arthrospira platensis str. Paraca] Length = 680 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 110/556 (19%), Positives = 184/556 (33%), Gaps = 99/556 (17%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + + Y++A N LDF+DLI+ L + + + Q+ HIL+DE QD Sbjct: 106 RVIAEVYSLYQDALAANNALDFDDLILVPVALFSQNE---QVLAYWHQKFCHILVDEYQD 162 Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+++IR LT + + + R++F VGD QSIYSF A+ + +L ++ Sbjct: 163 TNRTQYDLIRLLTTNGEPPPSFHNWQNRSIFVVGDVDQSIYSFRMADYRIMLEFQQDFGD 222 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + + ++I+L ++RS +IL V + + T Sbjct: 223 GLADDDSR-TLIKLEENYRSRENILEVANHLIQNNTTRIDKILRPTR------------- 268 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 D + + A + I +I + Sbjct: 269 ---------------SPGVPVCCHKADDEMAE-------AHFVVDQIRTIINQNP----- 301 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 I +L R + + R Y I D IKD ++ R Sbjct: 302 ---EIGFGSFAILYRTNAQSRPFEDVLRREDVHYNI----VGGLKFYDRREIKDAISYLR 354 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN------CGIS 479 I + D +S ++ P I + + ++E I + Sbjct: 355 VIANPADTVSLQRVINVPRRGIGRTTIDGLNNAAQQLGVPLWEIISDQDSVNTITGRAAK 414 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 + I + + D IL Q + +E D L E N Sbjct: 415 SVNRFAQMIQSWRDRLETTTALDILDGILEDSGYFQDLKQQGTDEADNRLDNLRELCNAV 474 Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + E+ +SLQ ++ V +MT+H+AKGLE P+VFLV Sbjct: 475 SQFQEEEEDTSLQAFLARASLSSDLDN--LQEGQEAVSLMTLHSAKGLEFPIVFLVGLEQ 532 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + + EE RL YVG+ Sbjct: 533 GLFPNFRSINDPLS----------------------------------LEEERRLCYVGI 558 Query: 656 TRASDQLIICKHSNTS 671 TRA +QL I S Sbjct: 559 TRAQEQLFITHTSERR 574 >gi|300712678|ref|YP_003738491.1| putative helicase [Halalkalicoccus jeotgali B3] gi|299126362|gb|ADJ16700.1| putative helicase [Halalkalicoccus jeotgali B3] Length = 1253 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 146/903 (16%), Positives = 303/903 (33%), Gaps = 86/903 (9%) Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 + L L D + A L + + Y K+ L Sbjct: 351 ALTAACETLINTLDPENQNLS--FDGAAIERSIPYVYAIARLYQTVREEYTRRKEAQHAL 408 Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 D+ DLI T D L+ D + R+++ ++ ++++DE+QDT QWE++ LT Sbjct: 409 DYSDLIERTIDFLETHDRA---RHELREQFEYLMVDEIQDTDPRQWELVTLLTG----SD 461 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 + + +F VGDEKQSIY F A+ + ++ ++ + +L +FR+ Sbjct: 462 GPNFDGQNVFLVGDEKQSIYRFRRADVTMFREARDRLKRANPDSTETAQ--QLSGNFRTL 519 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIR--HRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 + LT ++++F +G R E +V Q Sbjct: 520 SGPLTFINELFEEVFQPEGDEYQPYEARPQWLTPERSEGTEIDGTVEYLVVPETDQDVAP 579 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIG---TDTIFSNGKKRVIQAKDILVLVRK 382 S+FD S A +A ++ + + R Q +D+ +L R Sbjct: 580 LGLENSWFDERTYRSKGEREAYGVAARLTQLFDDPPQIYDPETDEYRAAQPRDVALLFRT 639 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 R P Y I + I+ L+ L + + ++ +L+ Sbjct: 640 RTRFPEFERAFEE----YDIPYSSFGARGFYETSEIQPLVNLLKVLQDPTQNIPLYGVLR 695 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA------Q 496 SPLF F+++ + + E + + + + + + A + Sbjct: 696 SPLFGFTDEQLAVLYDSD-------ECLWRQLATMDNALETAHGQLKQWREQAGLDGSDR 748 Query: 497 FCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 + + I+ + + +++F E+ S L E++ +E Sbjct: 749 ITTWASLLSEIIDDTGYLISVGADERPEQAVVNVNKFREQLRTWEEGSALPLSEVVERIE 808 Query: 556 QYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF-------SHKHIK 604 + A + V++ TVH+AKGLE P+V + + V + + + Sbjct: 809 RERDQEDDPGEATIPAAIDGVQLRTVHSAKGLEFPIVVVPELSRGVNERATITDNSSYSQ 868 Query: 605 KMHIMPSLNDDPGIPIWIPQ-----SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + ++ D+P + I P + ++ + E RLLYV TR Sbjct: 869 SLAYLETVGDEPVLGIKGPSPANSFETTATPDYEIAKTVQQQELRAESRRLLYVATTRVR 928 Query: 660 DQLIICKHSNTSNEKKSN---------QRTWYDMVYD-SFHNDERVKKIKLTNSINKDEW 709 D L++ ++ ++ +W D+V + E + + S Sbjct: 929 DHLLLTSTHTVGSDSEATFGEYDTGEQASSWRDLVQPVLLEDRELLSDLATAGSATHLLG 988 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN---------PS 760 P E + + ++P+ S ++ + + S Sbjct: 989 DGQYTVRRPPTPVAGPAESASTERACDIELPEPPESSAGIALSATAVRDLVSDHSSHDES 1048 Query: 761 TIDTKGKTNLESLLSDN----QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 +T+ + + S + G +H+L ++ T K Sbjct: 1049 RTETEPEHSAFLTESSSKKGLAPTQFGTAVHRLCELSLVGSTIDWSAAPTQIVDTPDK-L 1107 Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN-----CPKKDIIISGRIDQI 871 K+L + + + + + V + + G ID + Sbjct: 1108 SPTVLKDLQNQVQYGVSDIE-------QVEATLPVEATYDEYQVRLELPTGQVVGDIDHL 1160 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 +++ +I +YKT +++E + + AQL +Y L + ++ V LI+ + Sbjct: 1161 TVTDDCYYISDYKTDTLGDRDLETVAEHYFAQLYVYACALSQADSSRDCVLRLIFTNAET 1220 Query: 932 VFI 934 Sbjct: 1221 TAE 1223 >gi|45657496|ref|YP_001582.1| ATP-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600735|gb|AAS70219.1| ATP-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 732 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 196/617 (31%), Gaps = 119/617 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + YE+ K N DF DLI T L +K + K + ++++DE QD Sbjct: 167 KAVSAIYKEYEKRKDANYAFDFGDLIWKTVQLFQKSSDAI---SKYRHKWEYVMVDEYQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ +Q+E++ L + R L VGD+ QSIYS+ GA+ +L ++ + Sbjct: 224 TNKVQYELVLLLAGE----------KRNLCVVGDDDQSIYSWRGADIGNILNFEKDFPES 273 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I+L ++RST++I+ V S + Sbjct: 274 V--------VIKLEENYRSTSNIILAASNVISNNTQRKEKEIF----------------- 308 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + + + A + I + T Sbjct: 309 -----------TNNPEGAPVVLNEFENESEE-------AHGVITRIRSAYSGGT------ 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + K+I + R + R + I F D IKDL+A Sbjct: 345 ----EYKNIAIFYRTNSQSRYFEEALR----NVGIPYKIFGGFRFFDRAEIKDLIAYLNV 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----ETVYEYIQKFANCGISKFQ 482 + + D +S + ++ P + + KI E E + + SK + Sbjct: 397 VSNPLDSVSLLRIINYPPRGIGDSGVEKIREFSLEKGISILEVLGQEDIPLKKAAKSKGK 456 Query: 483 HVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +LI ++ SP + +L E ++ L E +N Sbjct: 457 ELYNLFCDLIEKSEKGLSPSEIALELLNRSGLMSHLKDEGTEESVARLENLQELVNSIEE 516 Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E+ + SL+E ++++ + V +MTVH AKGLE VVFL Sbjct: 517 YEKNSDSPSLEEYLNQISLITSEE--DSKELTDYVNLMTVHNAKGLEFEVVFLSGLEEGT 574 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H + EE RL YV +TR Sbjct: 575 FPHSMSLEESHFGD---------------------------------EEERRLFYVALTR 601 Query: 658 ASDQLIICKHSNTSN----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 A ++L + + E + R ++ F N V + + + Sbjct: 602 AREELFLSYCRTSRKFGKVEDRIPSRFLSEIPRKCFGNRGYVSRERTARKPQGPPVASKI 661 Query: 714 WSTHHPENTPLEREETI 730 ++ + Sbjct: 662 RQANNELESHHAPPPDP 678 >gi|317472670|ref|ZP_07931985.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA] gi|316899847|gb|EFV21846.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA] Length = 735 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 105/565 (18%), Positives = 188/565 (33%), Gaps = 114/565 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K N LDF+DL+ T +L + + + +I++DE QDT+ Sbjct: 169 AEIYKEYQKQLKANNALDFDDLLFKTVELFQFHPE---VLDYYQERFRYIMVDEYQDTNT 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+++I L + + L VGD+ QSIY F GA K +L + + Q Sbjct: 226 IQFQLISMLARKY----------QNLCVVGDDDQSIYKFRGANIKNILNFEGVFQ----- 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST +IL ++V + + + L Sbjct: 271 ---DAEVIKLEQNYRSTKNILNAANEVIRNNKGRKEKA---------------------L 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + Y + A +I I + Sbjct: 307 W-------TENDDGDTIVFHQYGTEYEE-------AGQIVEEIGRLAKDG---------- 342 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + K+I +L R + + I +KD++ + + + Sbjct: 343 VDYKNIAILYRTNAQSRIFEEKF----MIKNIPYRIVGGTNFYQRKEVKDVICYLKAVDN 398 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKFQHV 484 DDL+ ++ P I K+ + + + K + Sbjct: 399 GLDDLAVKRIINVPRRGIGATTIDKVQTYAIEQNIGFLDACFQARQIESLANAKRKIEKF 458 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + I + AQ S D F IL + E + + ++E LN + E+ Sbjct: 459 SELIADFREQAQKGSLEDLFHYILEETGYVTGLEAEGTEEAMARIENINELLNKIVAYEE 518 Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 +L L+ E+ + + N V +MT+H+AKGLE P VF+ +F Sbjct: 519 TAEEPTLSGLLEEIALVADID--SLEDSDNRVILMTLHSAKGLEFPYVFISGMEDGIFPS 576 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 I + EE RL YVG+TRA D Sbjct: 577 YMT--------------------------------IISEDQEELEEERRLCYVGITRAKD 604 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMV 685 +L + + ++ + Sbjct: 605 RLYLSAAKRRMMQGRTQFNKVSRFI 629 >gi|239617417|ref|YP_002940739.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1] gi|239506248|gb|ACR79735.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1] Length = 991 Score = 304 bits (777), Expect = 7e-80, Method: Composition-based stats. Identities = 163/840 (19%), Positives = 303/840 (36%), Gaps = 103/840 (12%) Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 K+ +T K L HYE ++N LDF+DL+I T DLL +R K + Sbjct: 206 KILLATRTFHKHFKQLVEHYENEARRNNSLDFDDLLIKTRDLLHNFP---QLREKYVRRF 262 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 +ILIDE QDT +Q +I L E+ L VGD KQSIY F GA+ Sbjct: 263 KYILIDEFQDTDWLQKTIIDYLHEE---------ERNFLLFVGDAKQSIYRFRGADVTVF 313 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTI 295 R K + + + L ++ RS D++ +++FS + G S Sbjct: 314 NRTKAEFEIKNAHLET------LSVNRRSHPDLVEFQNRLFSKIMLQDRSGKYYKSIYDT 367 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + Q +VS++ + +A I N Sbjct: 368 EVSAIPYEQDSNDSRVRVLVSENSDDS------------------------QVVAQYIKN 403 Query: 356 MIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 ++ + F N R I+ DI +L+RK + I Sbjct: 404 LLSEEITFRNKDGSYSTRKIKPGDIAILLRKFVNVSRYEDALEE----NGIPYYTVGSKA 459 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 D I +A I+ DD +F L SP F + +D+F++ ++ Sbjct: 460 FYDRPEIAGPLAWLDVIVDPLDDAAFARFLLSPAFGATFEDLFELKSKEKH------ISD 513 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 +F+ + + + + SP + + + + G I+ + Sbjct: 514 AILKTTDERFKPLRELFIKYSELKHVLSPSSVLQKFVDETEYLPKLASMKRGERAINNVK 573 Query: 531 EFLNFTLRNEQNSYSSLQEL----ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 + L ++ SL+EL + ++ T + + V+++TVH +KGLE P Sbjct: 574 KMLEIAKELDRLGT-SLRELSSNIKAFIDSSEETEATLETEESDSVKLLTVHKSKGLEFP 632 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VV + DT + S + +D I K + I S L K+ EE Sbjct: 633 VVIVADTFWKGKSDGSPYILT-----GEDGYIVSREQPKKESDTIESQLHLEEKEKNLEE 687 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 R LYV +RA + L++ + +K ++ R W M+ + E + + + Sbjct: 688 EKRTLYVAFSRAREMLVVS----LNGKKATSDRPWSQMLQGTLITGENQLCEDMEDLVEI 743 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 E E E E ++ + P F +D + ++PS + Sbjct: 744 VE---------PGEAVREEPESIEEKESFIIQWPDIEFIKSVDDRSYIKYISPSLLAEDF 794 Query: 767 KTNLESLLSD----NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK------NAKLW 816 + + G + H +L+ + R + S + + + Sbjct: 795 TIEISESEPGDILIRKPRELGTLTHSVLEAVGIRGRTGRVTTLESLLSGGIPASVDRIRF 854 Query: 817 PAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875 ++Y+ + + +L+++P++ S ++ SEV K ++ G +D++ Sbjct: 855 SEEDYEIVRKILYKLIDHPLIKEIETSDEAMSEVQFQKKF----DRYVLLGIVDKLYRVN 910 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 N I ++K + + + Q+ Y ILK+ L+++ + +V + Sbjct: 911 GNWRILDFK----FAEFSQKSFPKYEFQMKFYLYILKELLA--PECAKLLFLKDGEVREV 964 >gi|150388771|ref|YP_001318820.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF] gi|149948633|gb|ABR47161.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF] Length = 724 Score = 304 bits (777), Expect = 7e-80, Method: Composition-based stats. Identities = 102/578 (17%), Positives = 188/578 (32%), Gaps = 117/578 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y+ + N LDF+DLI+ T L + ++ +IL+DE QDT++ Sbjct: 170 ATIYEMYQNKLRSNNALDFDDLIMKTVQLFLTHP---PVLAFYQEKFKYILVDEFQDTNM 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ ++ L + L VGD+ QSIY + GA+ + +L ++ Sbjct: 227 AQYTLVSLLAK----------KHHNLCVVGDDDQSIYGWRGADIRNILGFEKDFPN---- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST +IL+ + V + + + G V Sbjct: 273 ----TRVIKLEQNYRSTKNILSAANAVVAKNSERKDK----------KLWTDNIPGEV-- 316 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + A I I M T+T Sbjct: 317 ----------------IQYYKASNEYDE-------AGYITNAIDEMKETETR-------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D +L R + + L I D I+D++A + I + Sbjct: 346 -SYNDFAILYRTNAQSRTLEE----LLMKKAIPYRLLGGTRFYDRKEIRDILAYLKIIEN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483 DD++ ++ P I K+ E E+ + E + + + Sbjct: 401 PVDDVNVKRIINVPKRGIGLRSIEKLEIHADERESSFFNALLDVELMPDLSTRVKVQSSK 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + I L I I + + E I+ L+EFL+ T + Sbjct: 461 FTQMITSLRDIKDEVPVTTIVKEIYKQSEYIDELHKEDTVEAKGRIENLEEFLSLTKDFD 520 Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +N + ++ L L + + V +MT+H+AKGLE PVVF+ +F Sbjct: 521 EN--AEIKTLEEFLARTSLETSLDLMDEDEAAVVLMTLHSAKGLEFPVVFIPGMEEGIFP 578 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + L YVG+TRA Sbjct: 579 SSMSLQENNEEEERR-----------------------------------LCYVGITRAM 603 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 ++L + + ++N + + ++K Sbjct: 604 EKLYLSHAMMRTLYGRTNANAVSRFIREIPEELITMEK 641 >gi|307704751|ref|ZP_07641647.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597] gi|307621660|gb|EFO00701.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597] Length = 763 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 104/592 (17%), Positives = 194/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + G+ Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDEL---------GR 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+D++A Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANTQEMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMILDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTSDVAEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|294786844|ref|ZP_06752098.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305] gi|315226480|ref|ZP_07868268.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM 10105] gi|294485677|gb|EFG33311.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305] gi|315120612|gb|EFT83744.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM 10105] Length = 901 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 111/727 (15%), Positives = 214/727 (29%), Gaps = 122/727 (16%) Query: 8 SLNESYELIYKDLWPLPY-FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ VS + + + + T + Sbjct: 110 AAREMKERLGSLIGPVAETMWVSTFHSACVRILRRHGK-DIGLSSGFSIY-DTADCQRLV 167 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKST 123 L+ F K + + D K L + + + F+ Sbjct: 168 KLICQDFNIDS----KRYTPRAVLGAISDWKNSLATWRQKLDEFAPDFHPGVPTHSIGDM 223 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + + A Y+ +DF+DLI+ T +L + +I +D Sbjct: 224 GKAERVFAIVYAEYQHRLGLANAVDFDDLIMRTVELFSTSPEA---LGYYRHRFRYIFVD 280 Query: 184 EVQDTSLIQWEVIRSLTE--DFFVGKNTHSSPRTL---FAVGDEKQSIYSFHGAEPKRVL 238 E QDT+ Q++++R+L+ + S L VGD QSIY+F GA+ +L Sbjct: 281 EYQDTNHAQYQLVRALSGIDEEKDPSGRPVSGDPLAWVTVVGDSDQSIYAFRGADISNIL 340 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 ++ + I L ++RST IL + V S EN + Sbjct: 341 DFEKDFPQ--------AKTIMLEQNYRSTQTILDAANAVISRNENRKPKR---------- 382 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 LW + +A + IA + ++ Sbjct: 383 -----------LWTAMGQGDKIVGFAA--------------DNAQQEGQWIAQETARLVE 417 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + DI ++ R + + + I + + Sbjct: 418 EE---------GYAYSDIALMYRANAQSRSLEEAF----INAGIPYQLVGGTRFYERKEV 464 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-- 475 KD +A + I++ DD++ +L P + T ++ ++ Sbjct: 465 KDAIAYLQCIVNPSDDVNMRRILNVPKRGLGARAESMLNEYASDNGITFWQAAEQAGQIE 524 Query: 476 ----CGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNE---VI 526 + + + +L A+ P +L + + + Sbjct: 525 GMTSRTLKPLAKFREVMTDLRRFAEENDSHPSSVVAQVLDQSGLVDELKQSLDPQDMTRV 584 Query: 527 DVLDEFLNFTLRNEQNSYS-SLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLE 584 D L + + EQN+ ++ + + +V +MT+HTAKGLE Sbjct: 585 DNLSQLQSVAAEYEQNTPDATVAGFLETTALVTDSDSLPDEGEDRGQVTMMTLHTAKGLE 644 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVFL F H Sbjct: 645 YPVVFLTGMEEGTFPHSRSL----------------------------------ENTDEL 670 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 E RL YVG+TRA +L + + S + + + ++ + ++ Sbjct: 671 SEERRLAYVGITRARRRLYLTRASMRAQWGNLQDFMPSQFLDEIPGELIEWERKETSSER 730 Query: 705 NKDEWIA 711 + W Sbjct: 731 IRSRWED 737 >gi|167748917|ref|ZP_02421044.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662] gi|167651539|gb|EDR95668.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662] Length = 735 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 104/565 (18%), Positives = 188/565 (33%), Gaps = 114/565 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K N LDF+DL+ T +L + + + +I++DE QDT+ Sbjct: 169 AEIYKEYQKQLKANNALDFDDLLFKTVELFQFHPE---VLDYYQERFRYIMVDEYQDTNT 225 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+++I L + + L VGD+ QSIY F GA K +L + + Q Sbjct: 226 IQFQLISMLARKY----------QNLCVVGDDDQSIYKFRGANIKNILNFEGVFQ----- 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST +IL ++V + + + L Sbjct: 271 ---DAEVIKLEQNYRSTKNILNAANEVIRNNKGRKEKA---------------------L 306 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + Y + A +I I + Sbjct: 307 W-------TENDDGDTIVFHQYGTEYEE-------AGQIVEEIGRLAKDG---------- 342 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + K+I +L R + + I +KD++ + + + Sbjct: 343 VDYKNIAILYRTNAQSRIFEEKF----MIKNIPYRIVGGTNFYQRKEVKDVICYLKAVDN 398 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKFQHV 484 DDL+ ++ P I K+ + + + K + Sbjct: 399 GLDDLAVKRIINVPRRGIGATTIDKVQTYAIEQNIGFLDACFQARQIESLANAKRKIEKF 458 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + I + AQ S D F IL + E + + ++E LN + E+ Sbjct: 459 SELIADFREQAQKGSLEDLFHYILEETGYVTGLEAEGTEEAMARIENINELLNKIVAYEE 518 Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 +L L+ E+ + + N V +MT+H+AKGLE P VF+ +F Sbjct: 519 TAEEPTLSGLLEEIALVADID--SLEDSDNRVILMTLHSAKGLEFPYVFISGMEDGIFPS 576 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 I + EE RL YVG+TRA + Sbjct: 577 YMT--------------------------------IISEDQEELEEERRLCYVGITRAKE 604 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMV 685 +L + + ++ + Sbjct: 605 RLYLSAAKRRMMQGRTQFNKVSRFI 629 >gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501] gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501] Length = 707 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 100/555 (18%), Positives = 179/555 (32%), Gaps = 116/555 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y++ K+N LDF+DLI+ T +L ++ ++ + +IL+DE QD Sbjct: 167 RVVGEIYESYQQQLKENNALDFDDLIMKTVELFEEYEL---VLEYYQNRFRYILVDEYQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 + Q+ +I L ED + + VGD+ Q IY F GA+ +L + + Sbjct: 224 VNHAQYRLINLLAED----------HKNICVVGDDDQGIYGFRGADISNILDFEEDYSQ- 272 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 II+L ++RST IL +V + + + G Sbjct: 273 -------TEIIKLEQNYRSTERILDAAYEVVRNNRGRKPKKLWTENDQGAPIKQYKARGE 325 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + A I I + + Sbjct: 326 TE-----------------------------------EAEYITEEIMKLREEE------- 343 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D VL R + ++ + R I + IKD++A R Sbjct: 344 --ALDYDDFAVLYRTNAQSRVLEEVFR----KQGIPYRIIGGLKFYERKEIKDILAYLRV 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN------CGISK 480 + + DD+ ++ P + ++ ++YE +Q+ + Sbjct: 398 LYNPSDDICLQRIINVPKRGIGATTVGRLNNFAAQHNISLYEAVQRVEEIDSINSRCSGQ 457 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537 + + + A + + +L + ++ + + E L Sbjct: 458 VRRFNELMSYFRQRADELNALELTKELLDETDYLKNLRQEDTDQARSRIENIKELLTDIE 517 Query: 538 RN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 EQ +L + E+ A+ V +MT+H+AKGLE PVVFL Sbjct: 518 EYIEQEGDITLGGYLEEVALITDVDNLEAEAS--AVVMMTLHSAKGLEFPVVFLSGMEEG 575 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H K EE RL YVGMT Sbjct: 576 LFPHSRSFD----------------------------------DKEAIEEERRLCYVGMT 601 Query: 657 RASDQLIICKHSNTS 671 RA ++L + + Sbjct: 602 RAEEKLYLTHALSRK 616 >gi|187931065|ref|YP_001891049.1| DNA helicase II [Francisella tularensis subsp. mediasiatica FSC147] gi|187711974|gb|ACD30271.1| DNA helicase II [Francisella tularensis subsp. mediasiatica FSC147] Length = 740 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 125/757 (16%), Positives = 234/757 (30%), Gaps = 144/757 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKL 100 I ++ + + S F ++ L T + KN + ++++ +K+ + Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHTHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 101 KKSQDEFIKI----------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 + K + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFINKQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDFA 187 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ +L +R + +ILIDE QDT+ +Q+ I+ L D Sbjct: 188 DLLLYLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWIKLLITD-------- 236 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + AVGD+ QSIY + GA + + + II+L ++RST +I Sbjct: 237 --NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKNI 286 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 L V + V +N +LW + + ++ Sbjct: 287 LKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVLY 318 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 + + A+ I I + + DI +L R + ++ Sbjct: 319 CAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVLE 361 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 362 ES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIGN 417 Query: 451 DDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDF 503 + I + + + ++ S I+ I + S Sbjct: 418 KTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDKL 477 Query: 504 FTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISEL 554 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 478 LESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSFA 537 Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + V++MT+H +KGLE VFLV VF I Sbjct: 538 VLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS-------- 587 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + + + E RL YV +TRA L I S Sbjct: 588 --------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRSIFG 633 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ T + K + A Sbjct: 634 RSSFQVKSRFVAEIDSQHLSQGKLEFTAAKPKTKQKA 670 >gi|282898588|ref|ZP_06306576.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii CS-505] gi|281196456|gb|EFA71365.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii CS-505] Length = 777 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 105/620 (16%), Positives = 204/620 (32%), Gaps = 105/620 (16%) Query: 79 TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAH 136 T K I+T+++N S K + +++ + + F+ + + + Sbjct: 159 TLIKEIVTKQLNLDSKKFDP--KSVRYAISNAKNQGLSPREFEEQQPNYRGRVIGEVYNL 216 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y++ N LDF+DLI+ L + + + + HIL+DE QDT+ Q+E++ Sbjct: 217 YQDQLAANNSLDFDDLILVPTRLFGQNE---QVLGYWHNKFRHILVDEYQDTNRTQYELL 273 Query: 197 RSLTEDFF-VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 R L + + R++F VGD QSIYSF A+ +L ++ + + Sbjct: 274 RLLVTNGECRKNQWNWDNRSVFVVGDADQSIYSFRMADFTILLEFQQDFGDGLDDDDTR- 332 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 ++++L ++RS +IL +++ T + Sbjct: 333 TMVKLEENYRSCENILQAANELIENNTERIDKILKPTRDV-------------------- 372 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 + + D + + A + I N+ I Sbjct: 373 --------GESIYFHKADDEVAE-------ADFVINQIRNL--------TTNNPDINWGS 409 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 +L R + L Y+I D IKD++A R I + D + Sbjct: 410 FAILYRTNAQSRPFEE----LLVKYQIPYTVVGGMKFYDRKEIKDVIAYLRAINNPADTV 465 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYI 488 S + ++ +P + I + + T++E + I Sbjct: 466 SLLRVINTPRRGIGKSTIDVLINASQQLGTTLWEILSDETSVNTLTGRAAKSVTSFTSMI 525 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYS 545 + + IL + + + +E + + E N + + + Sbjct: 526 KKW--QTTQVPASEVLEGILEDSGYLRDLMDQGTDEADNRISNVKELYNAVSQFQDENKG 583 Query: 546 SLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 S L + L+ + S + V +MT+H +KGLE P+VFLV +F Sbjct: 584 SDISLQAFLQSAALSSDLDDLSETRDVVSLMTLHASKGLEFPIVFLVGLEQGLFPG---- 639 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL YVG+TR ++L + Sbjct: 640 ------------------------------YRSLQDPKALEEERRLCYVGITRTQERLYL 669 Query: 665 CKHSNTS--NEKKSNQRTWY 682 ++ + + Sbjct: 670 SHARERRLYGSREPALPSQF 689 >gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 1002] Length = 785 Score = 303 bits (776), Expect = 9e-80, Method: Composition-based stats. Identities = 118/753 (15%), Positives = 222/753 (29%), Gaps = 159/753 (21%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + P+ ++ + S + L ++ Sbjct: 61 AAAEMRERVAHLVGPIASRMW--VSTFHSTCVRILREQAQ-LVAGLNSNFTIYDSDDSKR 117 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL+ +K + + +LK +L + N Y+ Sbjct: 118 LLAMISKDMNLDIKK-FTPRLLGAGISNLKNELISPATAVAEAESTKNPYETT------- 169 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ ++ +DF+DLI T + K+ + + H+LIDE QD Sbjct: 170 --VAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHP---QVTEYYRRRFRHVLIDEYQD 224 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +I L T + L VGD QSIY+F GA + + +R Sbjct: 225 TNHAQYVLIHELV-------GTGETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPN- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + + L ++RST IL + V S EN + Sbjct: 277 -------ATTVLLEQNYRSTQTILNAANSVISQNENRRKKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S + + + AR IA I + Sbjct: 311 --LWTALGS-------GDPITGYVADNEHDE-------ARFIAQEIDALADKG------- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ ++ R + + + I + I+D++A R Sbjct: 348 ---IDYSDMAIMYRTNNSSRAVEDVF----MRSGIPYKVVGGTRFYERKEIRDVIAYLRL 400 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH--- 483 + + ED +S ++ +P + + + ++ ++ + + + +S Sbjct: 401 LDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGR 460 Query: 484 -----VIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527 + + L A + IL + + + +D Sbjct: 461 NAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLD 520 Query: 528 VLDEFLNFTLRNEQN------------------------SYSSLQELISELEQYPPTIKR 563 L+E ++ SLQ + + + Sbjct: 521 NLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQI 580 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 V +MT+HTAKGLE PVVFL+ F H Sbjct: 581 -PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPH----------------------- 616 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 L E RL YVG+TRA L I + S+ Sbjct: 617 -----------LRALGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASR 665 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + + ++ + +S + ++ +T Sbjct: 666 FLTEIPQELLDWRREEPESSFDAWGQPSWGRNT 698 >gi|221231829|ref|YP_002510981.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] gi|220674289|emb|CAR68831.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] Length = 763 Score = 303 bits (776), Expect = 9e-80, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|168334212|ref|ZP_02692415.1| ATP-dependent DNA helicase PcrA [Epulopiscium sp. 'N.t. morphotype B'] Length = 731 Score = 303 bits (776), Expect = 9e-80, Method: Composition-based stats. Identities = 109/547 (19%), Positives = 189/547 (34%), Gaps = 114/547 (20%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + Y++ +N V+DF+DL++N L + + +IL+DE QDT Sbjct: 165 IIAKIYDAYQDKLYENNVMDFDDLLVNVCILFNNHPD---VLSFYQNKFKYILVDEYQDT 221 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +Q+E+IR L + + L VGD+ QSIY + GA+ +L ++ + Sbjct: 222 NCVQYELIRQLAD----------KHKNLCVVGDDDQSIYGWRGADISNILEFEKDFEN-- 269 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +II+L ++RST +IL + V EN + Sbjct: 270 ------TTIIKLEQNYRSTKNILEAANAVVKNNENRKPKVLF------------------ 305 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 D++ Q E + + A IA IS + Sbjct: 306 ---------TDNETGEQIELYVVKNEY--------READVIAAQISKDLSEYRR------ 342 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 KD +L R + ++ I + IKDL++ + I Sbjct: 343 ---DYKDFAILYRTNAQSRVLEEKM----IQSSIPYRMLGGVRFYERKEIKDLVSYLKII 395 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG-------ISKF 481 ++ +DD++ ++ P I KI ++ + + + K K Sbjct: 396 VNVQDDVAARRIINIPKRGIGAASIDKIQQAANDYQVNFYEVAKNIRQFGILGKTATEKV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLR 538 I EL +AQ + I+ + D + EF++ Sbjct: 456 SVFANLIEELKELAQEENILALLQAIIVKTDYNNFLKETEPEDAADRILNVREFVSKAAA 515 Query: 539 N-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + N ++L + E+ N N V +MT+H++KGLE PVVF+ + Sbjct: 516 YVQSNEEANLNNFLEEITLVADVDNYD--QNSNAVVLMTLHSSKGLEFPVVFMPGLEEGL 573 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F K+ EE RL YVG+TR Sbjct: 574 FPSHMS--------------------------------ASDEDKTKLEEERRLCYVGITR 601 Query: 658 ASDQLII 664 A ++L I Sbjct: 602 AREKLYI 608 >gi|312135101|ref|YP_004002439.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL] gi|311775152|gb|ADQ04639.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL] Length = 714 Score = 303 bits (776), Expect = 9e-80, Method: Composition-based stats. Identities = 110/550 (20%), Positives = 181/550 (32%), Gaps = 114/550 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + K+ DF+DL+ T L + I K + +IL+DE QDT+ Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNYA 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I L++ + VGD+ QSIYSF GA K +L +++ Sbjct: 226 QFYFIYLLSQ----------KHMNVCVVGDDDQSIYSFRGANIKNILEFEKVFSN----- 270 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST IL+ ++V + LW Sbjct: 271 ---AKVIKLEKNYRSTKTILSAANEVIKHNYYRKSKM---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ S FD + + A +A +I N+I + Sbjct: 307 -------TDNHEGEKIFLYSAFDEVNE-------AEFVAASIKNLIENG----------V 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 I VL R + Y + + IKD++A R I + Sbjct: 343 LPSQIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNS 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHVI 485 DDLS ++ P + KI E T + F K + Sbjct: 399 HDDLSLFRIINVPRRGIGNSTLEKIKVLSEEYGVSAYTILLERAKFDFDKKTYEKLNSFV 458 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 I +L A+ S L+L + +S E +++ ++ E+ Sbjct: 459 SLIEDLKAEAENLSVSQTIKLVLDRTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518 Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++Q ++ + +V +MTVH AKGLE VVFL +F Sbjct: 519 NEEPTVQNFLNSITLSSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFP-- 573 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 +V + EE RL YV +TRA Sbjct: 574 -----------------------------LVRAEEALEAEKELEEERRLCYVAITRAKKL 604 Query: 662 LIICKHSNTS 671 L++ +N Sbjct: 605 LVLTYANNRR 614 >gi|225858900|ref|YP_002740410.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585] gi|225721717|gb|ACO17571.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585] Length = 763 Score = 303 bits (776), Expect = 9e-80, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYIDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTKEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] Length = 846 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 119/753 (15%), Positives = 222/753 (29%), Gaps = 159/753 (21%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + P+ ++ + S + L ++ Sbjct: 122 AAAEMRERVAHLVGPIASRMW--VSTFHSTCVRILREQAQ-LVAGLNSNFTIYDSDDSKR 178 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL+ +K + + +LK +L + N Y+ Sbjct: 179 LLAMISKDMNLDIKK-FTPRLLGAGISNLKNELISPATAVAEAESTKNPYETT------- 230 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ ++ +DF+DLI T + K+ I + H+LIDE QD Sbjct: 231 --VAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHP---QITEYYRRRFRHVLIDEYQD 285 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +I L T + L VGD QSIY+F GA + + +R Sbjct: 286 TNHAQYVLIHELV-------GTGETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPN- 337 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + + L ++RST IL + V S EN + Sbjct: 338 -------ATTVLLEQNYRSTQTILNAANSVISQNENRRKKK------------------- 371 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S + + + AR IA I + Sbjct: 372 --LWTALGS-------GDPITGYVADNEHDE-------ARFIAQEIDALADKG------- 408 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ ++ R + + + I + I+D++A R Sbjct: 409 ---IDYSDMAIMYRTNNSSRAVEDVF----MRSGIPYKVVGGTRFYERKEIRDVIAYLRL 461 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH--- 483 + + ED +S ++ +P + + + ++ ++ + + + +S Sbjct: 462 LDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGC 521 Query: 484 -----VIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527 + + L A + IL + + + +D Sbjct: 522 NAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLD 581 Query: 528 VLDEFLNFTLRNEQN------------------------SYSSLQELISELEQYPPTIKR 563 L+E ++ SLQ + + + Sbjct: 582 NLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQI 641 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 V +MT+HTAKGLE PVVFL+ F H Sbjct: 642 -PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPH----------------------- 677 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 L E RL YVG+TRA L I + S+ Sbjct: 678 -----------LRALGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASR 726 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + + ++ + +S + ++ +T Sbjct: 727 FLTEIPQELLDWRREEPESSFDAWGQPSWGRNT 759 >gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A] gi|123960164|gb|ABM74947.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A] Length = 805 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 116/642 (18%), Positives = 221/642 (34%), Gaps = 103/642 (16%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L Y +A N LDF+DL++ LL++ + IR H+L+DE QD Sbjct: 207 KLVAETYRLYRKALAANNALDFDDLLLIPVQLLQQNE---KIRTYWHSRFKHVLVDEYQD 263 Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+E+I+ L + + + R++F VGD QSIYSF A+ + ++ + K Sbjct: 264 TNWTQYELIKQLVTNGKDPSSFQDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGK 323 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 ++ + ++++L ++RST+ IL + + S + +T Sbjct: 324 KSLDNTYDSTLVKLEENYRSTSTILEAANSLISNNKERIDKVLRATR------------- 370 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 + T D + + A + + + + + Sbjct: 371 ---------------GEGEPIRLTRCDDEIAE-------AEAVIHRLRIL--------DA 400 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D+ +L R + I + I + D IKDL+A R Sbjct: 401 SNPELNWGDMAILYRTNAQSRAIEDSL----VRWSIPYIVVGGLRFYDRREIKDLLAYLR 456 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479 +++ D +S + +L P + + ++ + ++ E ++ A Sbjct: 457 LLINPSDSVSLLRVLNVPKRGIGKTTVQRLSDAASQLKIPLWEVVNDPEAVRSLAGRSAK 516 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536 + I+EL SP + L+L + I+ E L E +N Sbjct: 517 GLLIFSELINELQSHLLSSSPAELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAA 576 Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L+ E++ ++L+ +S + N V +MT+H++KGLE PVV LV Sbjct: 577 LQYQEESEDANLEGFLSTAALSSDADNKD--TASNRVTLMTLHSSKGLEFPVVCLVGMEQ 634 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + EE RL YVG+ Sbjct: 635 GLFPSYRSLDDPS----------------------------------SLEEERRLCYVGL 660 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++L + S + + + I L+ + Sbjct: 661 TRAKEKLFLFHASERRMWGGMREPAIASIFLSEIPEELVKGDIPLSGGATLRREKNLDRL 720 Query: 716 THHPE-----NTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 T + P E E +++ K+ + + + Sbjct: 721 TRIDRQSNKKSFPREAENAVRKTYSGPSPGKRWSVNDRVEHS 762 >gi|253575957|ref|ZP_04853291.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786 str. D14] gi|251844751|gb|EES72765.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786 str. D14] Length = 661 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 105/611 (17%), Positives = 202/611 (33%), Gaps = 121/611 (19%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 K Q ++ T + ++ + + + A Y+ ++N LDF+DLI+ T + Sbjct: 150 KAVQAAISTAKNELITPQQYEQKIGDYFEGIVAKIYAQYQRQLRQNNSLDFDDLIMKTIE 209 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 L K + + ++ +I +DE QDT+ Q+ + R L + + Sbjct: 210 LFK---AAPDVLDFYQKKFQYIHVDEYQDTNRAQYMLCRMLAD----------KHHRICV 256 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD QSIY + GA+ +L ++ + I L ++RST+ IL ++V Sbjct: 257 VGDSDQSIYRWRGADISNILNFEKDYPE--------AKTILLEQNYRSTSTILNAANEVI 308 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + LW + + + + Sbjct: 309 GHNTGRKPKK---------------------LW-------TDKGDGDKIKVYRANSEHDE 340 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 + I N + + +D +L R + +I + Sbjct: 341 GY-------FVTTEIHNSVKSGR----------NYRDHAILYRTNAQSRVIEEIL----I 379 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 I D IKDL+A R + + +DD+S ++ P + + K+ Sbjct: 380 KSDIPYQIVGGIKFYDRKEIKDLLAYLRVLSNPDDDISLTRIINVPKRGIGDTTVAKLAD 439 Query: 459 QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 + T + + A + IH L + + S + +L + Sbjct: 440 AAAQRGTSIYRVLEVVDDLGIAGRTRNALVEFFDMIHGLHQMVPYLSVTELTEKLLEVTQ 499 Query: 513 GRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSAN 568 R + + E + +DEFL+ T+ E N SL +++L +++ Sbjct: 500 YRLELQNENTLEARSRLENIDEFLSVTMEFENNNEDKSLVSFLTDLALIADIDSMNDNSD 559 Query: 569 -----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + V +MT+H+AKGLE PVVF++ VF H + Sbjct: 560 AEKPNDDAVVLMTMHSAKGLEFPVVFIIGMEEGVFPHSRAFLDNEELEEERRL------- 612 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 YVG+TRA ++L + + ++ Sbjct: 613 ---------------------------AYVGITRAEEKLYLSCAQMRTLFGRTTANPPSR 645 Query: 684 MVYDSFHNDER 694 + + + Sbjct: 646 FLDEIPEELKE 656 >gi|168483162|ref|ZP_02708114.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1873-00] gi|172043466|gb|EDT51512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1873-00] Length = 763 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|325103975|ref|YP_004273629.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] gi|324972823|gb|ADY51807.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] Length = 768 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 107/671 (15%), Positives = 199/671 (29%), Gaps = 132/671 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + A Y K +DF+DL+ TN LLK + YK + ++++DE QDT+ Sbjct: 175 LGKVYATYTARCFKAGAMDFDDLLFKTNVLLKDHPD---VLYKYQHKFKYLMVDEYQDTN 231 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +++ L + L VGD+ QSIY F GA + +L ++ Sbjct: 232 FSQYLIVKKLAAVTY----------NLCVVGDDAQSIYGFRGANIQNILNFQKDYP---- 277 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + +L ++RST +I+ V + + N + S Sbjct: 278 ----DVKVFKLEQNYRSTQNIVNVANSIIKNNANQLEKNVFSD----------------- 316 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + S++ + +A I + Sbjct: 317 -------NDEGDKIKITRSYSDNEEGKS-------VAESILQE-------------RSIK 349 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D VL R + + R I IKDL+A R Sbjct: 350 SLDWNDFAVLYRTNAQSRSMEEALR----KANIPYKIYGGMSFYQRKEIKDLIAYFRLTF 405 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE----YIQKFANCGISKFQHV 484 + D+ +F ++ P + I K I +T+++ Q N + + Sbjct: 406 NNNDEEAFKRVINYPARGIGKTTIDKMILAADQNGKTLFDIATNAFQFLDNRAATAVNNF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 I IA+ + + + I + E + + E LN Sbjct: 466 ATTIQSFAAIAKNNNAFEAASHIAQHSGLLKDLYEDKSVEGLARYENIQELLNGIKEFSE 525 Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E L + ++ + + V +MT+H++KGLE V++V +F Sbjct: 526 REDIEDRGLSVFMEDVALLTNDD-NQKPEDKDTVSLMTIHSSKGLEFNQVYVVGLEENLF 584 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++ EE RL YV +TRA Sbjct: 585 PSQMSLNS----------------------------------RADLEEERRLFYVAVTRA 610 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +L I ++ E + + + + + + + + Sbjct: 611 EKKLHISYATSRFKFGTLVNS-------------EPSRFLDEIDPRYLEIELPKKAFSSN 657 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 P + ER + + P S + D Sbjct: 658 PSSFDGERSAWKSKTSEAPASTDVFSKPKPASQKVKTT---SLLSKAHVPTPGFKPEDTS 714 Query: 779 TFNRGLII-HK 788 G I+ H+ Sbjct: 715 NLQVGEIVEHE 725 >gi|76057858|emb|CAJ18308.1| ATP-dependant helicase [Paenibacillus jamilae] Length = 605 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 104/561 (18%), Positives = 191/561 (34%), Gaps = 125/561 (22%) Query: 126 SLTLAKYLNAHY---EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T+ + L Y + K N LDF+DLI+ T L K+ + ++ +I + Sbjct: 19 LATILRGLWRRYIPSTQRLKNNNSLDFDDLIMATIQLFKE---VPEVLDFYQKKFQYIHV 75 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q+ + + L + + VGD QSIY + GA+ +L + Sbjct: 76 DEYQDTNRAQYMLCKMLAD----------KHHRICVVGDSDQSIYRWRGADISNILNFEE 125 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + I L ++RST++IL ++V + Sbjct: 126 DYP--------EARTILLEQNYRSTSNILNAANEVIGQNTGRKPKK-------------- 163 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 LW D + + + + + + IA I I Sbjct: 164 -------LW------TDKEGGAKIKVYRADSEHDEGY--------FIASEIHKNINAGK- 201 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 +L R + ++ + I D IKDL+ Sbjct: 202 ---------TYSHHAILYRTNAQSRVVEEIL----IKSDIPYQIVGGIKFYDRKEIKDLL 248 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--------TQRHETETVYEYIQKFA 474 A R + + +DD+S + ++ P + + + K+ ++ + Sbjct: 249 AYLRLLSNPDDDISLIRIINVPKRSIGDTTVGKLQAVYRQNYNYGVQNGISLTAVFDEIE 308 Query: 475 N-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI--- 526 + + +H +++ ++ S + ++ R + E Sbjct: 309 HVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNERTLEAEGRL 368 Query: 527 DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLE 584 + LDEFL+ T E Q+ SL +++L + EV +MT+H+AKGLE Sbjct: 369 ENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILMTMHSAKGLE 428 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVF+V +F H +++ Sbjct: 429 FPVVFIVGLEEGIFPHTRSL----------------------------------MEEDEM 454 Query: 645 EEYNRLLYVGMTRASDQLIIC 665 +E RL YVG+TRA ++L + Sbjct: 455 QEERRLAYVGITRAEEELYLS 475 >gi|148994163|ref|ZP_01823478.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68] gi|168488930|ref|ZP_02713129.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195] gi|147927406|gb|EDK78436.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68] gi|183572486|gb|EDT93014.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195] gi|332073447|gb|EGI83926.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17570] Length = 763 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYCADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVAEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis C231] gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19] Length = 846 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 118/753 (15%), Positives = 222/753 (29%), Gaps = 159/753 (21%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + P+ ++ + S + L ++ Sbjct: 122 AAAEMRERVAHLVGPIASRMW--VSTFHSTCVRILREQAQ-LVAGLNSNFTIYDSDDSKR 178 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL+ +K + + +LK +L + N Y+ Sbjct: 179 LLAMISKDMNLDIKK-FTPRLLGAGISNLKNELISPATAVAEAESTKNPYETT------- 230 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ ++ +DF+DLI T + K+ + + H+LIDE QD Sbjct: 231 --VAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHP---QVTEYYRRRFRHVLIDEYQD 285 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +I L T + L VGD QSIY+F GA + + +R Sbjct: 286 TNHAQYVLIHELV-------GTGETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPN- 337 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + + L ++RST IL + V S EN + Sbjct: 338 -------ATTVLLEQNYRSTQTILNAANSVISQNENRRKKK------------------- 371 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S + + + AR IA I + Sbjct: 372 --LWTALGS-------GDPITGYVADNEHDE-------ARFIAQEIDALADKG------- 408 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ ++ R + + + I + I+D++A R Sbjct: 409 ---IDYSDMAIMYRTNNSSRAVEDVF----MRSGIPYKVVGGTRFYERKEIRDVIAYLRL 461 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH--- 483 + + ED +S ++ +P + + + ++ ++ + + + +S Sbjct: 462 LDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGR 521 Query: 484 -----VIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527 + + L A + IL + + + +D Sbjct: 522 NAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLD 581 Query: 528 VLDEFLNFTLRNEQN------------------------SYSSLQELISELEQYPPTIKR 563 L+E ++ SLQ + + + Sbjct: 582 NLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQI 641 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 V +MT+HTAKGLE PVVFL+ F H Sbjct: 642 -PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPH----------------------- 677 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 L E RL YVG+TRA L I + S+ Sbjct: 678 -----------LRALGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASR 726 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + + ++ + +S + ++ +T Sbjct: 727 FLTEIPQELLDWRREEPESSFDAWGQPSWGRNT 759 >gi|291456654|ref|ZP_06596044.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213] gi|291381931|gb|EFE89449.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213] Length = 901 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 120/733 (16%), Positives = 226/733 (30%), Gaps = 124/733 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L+ + Sbjct: 85 AAVEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 138 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123 L T+ K + I DLK L ++ F F + Sbjct: 139 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 198 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A YE +DF+DLI T +LL+ + +IL+D Sbjct: 199 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 255 Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L S P + VGD QSIY+F GA+ + Sbjct: 256 EYQDTNHAQYVLVRELAGVDTGEKAIPGSPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 315 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V S E + Sbjct: 316 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 359 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + + A A+ +A I+ + Sbjct: 360 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 392 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + I D+ ++ R + + + + + Sbjct: 393 HAEE---------DIAYSDMAIMYRANAQSRSLEEAL----INAGLPYQLVGGTKFYERR 439 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEY------ 469 IKD +A + +++ +DD++ +L P + R + + Sbjct: 440 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGNRAEGILLAYARERGTSFFYALMHLDE 499 Query: 470 IQKFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 IQ ++ + + EL A P + +L R + + Sbjct: 500 IQDVPTRTATQLKAFRDLMGELSQFTRAHDAKPSEIVAEVLEKSGLRAELEKSVDPQDAS 559 Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582 ++ L + + EQN+ +L + + + + +V +MT+HTAKG Sbjct: 560 RLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKG 619 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H + Sbjct: 620 LEYPVVFLTGMEQGTFPHS----------------------------------RSMEDTT 645 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 +E RL YVG+TRA +L + + + S ++ + + + K+ + Sbjct: 646 ELQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGV 705 Query: 703 SINKDEWIAYEWS 715 + W + ++ Sbjct: 706 ERMRANWESDGFA 718 >gi|329929647|ref|ZP_08283344.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5] gi|328935973|gb|EGG32428.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5] Length = 673 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 120/723 (16%), Positives = 227/723 (31%), Gaps = 133/723 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + + + + ++ L Sbjct: 33 GAGSGKTRVLTHRIAYLIATRKAAPWSILAITFTNKAAREMQERVSKLVGREGQDIWVST 92 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110 F + L + I + L + K Q Sbjct: 93 FHSMCVRILRRDIERIGFTSNFSILDSTDQLSVIRNVMKQHNIDPKKFEPKAIQAAMSAA 152 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + + ++ TL + Y++ K N LDF+DLI+ T L K+ Sbjct: 153 KNELISPQQYEQKAGDYFETLVAKVYTEYQKRLKSNNSLDFDDLIMTTIQLFKE---VPE 209 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q+ + R L + S + VGD QSIY Sbjct: 210 VLDFYQRKFQYIHVDEYQDTNRAQYMLCRMLAD----------SHHRICVVGDSDQSIYR 259 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L ++ + I L ++RSTA+IL + V + + + Sbjct: 260 WRGADITNILNFEQDYPE--------ARTILLEQNYRSTANILNAANNVIGLNTGRKPKN 311 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + P+ + + + Sbjct: 312 ---------------------LW------TEQGEGPKIKVFRGDTEHDEGY--------F 336 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + IS I +D +L R + +I + I Sbjct: 337 VTSEISKNIKDGK----------SYQDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A R I + +DD+S ++ P + + + K+ E Sbjct: 383 GIKFYDRKEIKDMLAYLRLISNPDDDISLTRIINVPKRSIGDTTVAKLAAAAGERGISIF 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + FA + I L + +F S + IL + R + + Sbjct: 443 RVLEIVDDLGFAGRTRNALVGFYDMIAALSRMVEFLSVTELTEKILEMSEYRLELQNENT 502 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMT 576 E ++ +DEFL+ T E+ N SL +++L + V +MT Sbjct: 503 IESRSRLENIDEFLSVTQEFEKNNEDKSLVSFLTDLALIADIDSMNDDEEDRDDAVVLMT 562 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE PVVF++ VF H + Sbjct: 563 MHSAKGLEFPVVFIIGMEEGVFPHSRAFMDNEELEEERRL-------------------- 602 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 YVG+TRA QL + + ++ + + + Sbjct: 603 --------------AYVGITRAEKQLFLSCARMRTLFGRTTANMPSRFLEEIPEELKEDT 648 Query: 697 KIK 699 ++ Sbjct: 649 QMA 651 >gi|172056503|ref|YP_001812963.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15] gi|171989024|gb|ACB59946.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15] Length = 741 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 124/764 (16%), Positives = 231/764 (30%), Gaps = 137/764 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + QV+ N + + L Sbjct: 32 GAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNKAAREMRDRISRLVGGVANDIWVST 91 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLK---------KSQDEFIKIRDR 113 F + L + +N + + + LK LK + I + Sbjct: 92 FHSMCVRMLRRDIEKIGYNRNFTILDSSDQQSALKLVLKEQNLDPKKWDPRSMLSIISSQ 151 Query: 114 FNTYKMFKSTLASLT-----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 N + + + +T + YE ++N LDF+DLI T +L K+ Sbjct: 152 KNELRSAEFYASIVTNPYEKTVAEIYKGYEAVLRRNNALDFDDLIGKTTELFKQNPD--- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +I +DE QDT+ Q++++ L + + L VGD QSIY Sbjct: 209 VLSFYQRKFQYIHVDEYQDTNKAQYDLVNLLAA----------AHQNLCVVGDSDQSIYR 258 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ +L + +I L ++RS+ IL + V + Sbjct: 259 WRGADIANILSFEEDYPT--------AKVILLEQNYRSSKRILDAANHVIQNNSTRKDKK 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW ++ + + + A Sbjct: 311 ---------------------LW-------TENAEGEKLIVHTAENEREE-------AFY 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I N + ++ D+ +L R + I + Sbjct: 336 IVQEIRNALRYG----------MKLNDVAILYRTNAQSRAIEETL----LKSNVPYKMIG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY 467 D IKD++A R I + +DLSF ++ P I K+ + ++ Sbjct: 382 GTKFYDRKEIKDVLAYLRLISNPNEDLSFARIVNEPKRGIGATTIDKLRDFADLQGVSLM 441 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E I+ A +K I L + +F S + +L RQ Sbjct: 442 EAIRDIELSSIAPKTAAKLTDFRTMILGLQQMQEFISLSELVEEVLEKTGYRQVLKEDKT 501 Query: 523 NEVI---DVLDEFLNFTLRNEQN------SYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + ++EF+ E+ ++ +++L S +V Sbjct: 502 LEAQSRLENINEFITVAQNFEKETEKADPEDQTIIAFLTDLTLVADVDSLDESDLGEQVT 561 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE P+VFL+ +F H + Sbjct: 562 LMTLHSAKGLEFPIVFLIGMEEGLFPHSRSLQDEDEMEEERR------------------ 603 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN-D 692 L YVG+TRA +L + S ++N + + Sbjct: 604 ----------------LAYVGITRAEKRLYLSHARMRSLYGRTNANLESRFLAELPEEVL 647 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 ER K + P + + + + Sbjct: 648 ERTGKKPKPLPWEDRPVPQGKAVIGRSVTKPTAMKTSGAESLGW 691 >gi|168494521|ref|ZP_02718664.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC3059-06] gi|225854583|ref|YP_002736095.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA] gi|183575566|gb|EDT96094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC3059-06] gi|225724045|gb|ACO19898.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA] Length = 763 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|148989130|ref|ZP_01820520.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73] gi|147925353|gb|EDK76431.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73] Length = 763 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|225574543|ref|ZP_03783153.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM 10507] gi|225038230|gb|EEG48476.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM 10507] Length = 737 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 110/692 (15%), Positives = 220/692 (31%), Gaps = 133/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + Sbjct: 27 GAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAQEMKERVDQIVGFGSESVWVTT 86 Query: 66 FSLLSSFFLTQ-----KFTPQKNIITQEINKK-SPDLKEKL---------KKSQDEFIKI 110 F L + F + I + K D+ ++L + + Sbjct: 87 FHSTCVRILRRYIDRIGFDNRFTIYDADDQKSLMKDICKRLQIDTKLYKERALLAQISHA 146 Query: 111 RDRFNTYKMFKSTL----ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 +D+ + + F+ + + +A+ + Y+ ++N LDF+DLI+ T +L + Sbjct: 147 KDQLVSPEEFELNSQGDYSKMRVAE-VYKEYQTQLRRNNALDFDDLIMKTVELFQS---C 202 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +I++DE QDT+L Q++ + L + + L VGD+ QSI Sbjct: 203 PEVLESYQERFRYIMVDEYQDTNLAQFQFVSLLASKY----------QNLCVVGDDDQSI 252 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y F GA + +L +R+ +I L ++RST +IL ++V + Sbjct: 253 YKFRGANIENILGFERVFSN--------TKVIRLEQNYRSTKNILQAANEVIQNNAQRKP 304 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW + + + + A Sbjct: 305 KT---------------------LW-------TDNEEGNKVHFRHFLSGFEE-------A 329 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I+ +D VL R + L I Sbjct: 330 EYVVGDIAQKHREGI---------CSYRDCAVLYRTNAQSRLFEEKF----LMANIPYRL 376 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 IKDL++ + + + +DDL+ ++ P + ++ + + Sbjct: 377 VGGVNFYARKEIKDLLSYLKTVDNAKDDLAVRRIINIPKRGIGATTLLRVQEYATEQDIS 436 Query: 466 VYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 Y+ +++ K Q + I L + S + ++ Q I+ Sbjct: 437 FYDALKEAEKIPKLGRAAVKIQPFVTMIQSLRSEQRSFSVSELLDDVIERTGYVQDLIAE 496 Query: 521 FGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576 +E I+ +DE + + ++ +L + E+ N + V +MT Sbjct: 497 DTDESRARIENIDELITKATTYDKESENPTLGGFLEEVALVADIDTVDP--NQDHVLLMT 554 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE V+L +F Sbjct: 555 LHSAKGLEFSQVYLAGMEDGIFPSYMTIGSEDPGD------------------------- 589 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 EE RL YVG+TRA L + Sbjct: 590 -------MEEERRLCYVGITRAMKDLTMTSVQ 614 >gi|312870522|ref|ZP_07730641.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3] gi|311093984|gb|EFQ52309.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3] Length = 762 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 115/766 (15%), Positives = 224/766 (29%), Gaps = 148/766 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V N + ++ L Sbjct: 31 GAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEMQERVGKLLGEGAQDIWVST 90 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + + + +++ +K+ + + K R + + Sbjct: 91 FHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLMKQVCAELNIDPKKFDPRSILSTISNA 150 Query: 123 TLASL--------------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 A L + Y+E + N LDF+DLI+ T +L ++ Sbjct: 151 KNALLTPKDYAVKAGSDNNPHSMYSQVVARAYKLYQEQLEANQALDFDDLIMKTIELFEQ 210 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + ++I +DE QDT+ Q++++ L + + + VGD Sbjct: 211 DPET---LEFYQDRFHYIHVDEYQDTNDAQYKLVHMLADKYE----------NICVVGDA 257 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA + +L +R + L ++RST +IL ++V Sbjct: 258 DQSIYGWRGANIENILNFERDYP--------GAHTVMLEQNYRSTQNILDAANEVIKNNN 309 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + + LW + S+ + + Sbjct: 310 GRKDKN---------------------LW-------TENGQGDKISYYQAQNEHDE---- 337 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A+ I I D +L R + +I + Sbjct: 338 ---AQYIVSKIQEEHAK---------HGYHYNDFAILYRTNAQSRVIEETF----MKSSV 381 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 D I+D++A I++ +D +SF ++ +P + + Sbjct: 382 PYTMVGGHKFYDRKEIRDILAYLTLIVNHQDSMSFSRVVNTPKRGIGLTSVEHLRDFAND 441 Query: 462 ETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 ++ E Q +K + I +L A F S + IL + Sbjct: 442 NHWSLLEASQNIDIANTITARTRNKLADFGQLIKDLDKQADFLSITELTDQILERSGYNK 501 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQYPPTIKRAH 565 E + LDEF + T ++ L +++L Sbjct: 502 MLQKDNSLEAQARQENLDEFKSVTQEYDKQHADDDVYNRQKLVNFLADLALVSDQD--DV 559 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 V +MT+H AKGLE PVVFLV +F Sbjct: 560 DEQAPAVTLMTLHAAKGLEFPVVFLVGMEEGIFPLSRALLEDDELEEERRL--------- 610 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWY 682 YVG+TRA +L + + +++ + Sbjct: 611 -------------------------AYVGITRAKKKLYLTNAVSRLLYGRVQRNQPSRFV 645 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + + +E S+ D+ A + + ++ R+ Sbjct: 646 EEISPELLEEEGGGMNNFGGSLPFDKRAALKPTYRSQQSKHHYRDA 691 >gi|149024889|ref|ZP_01836290.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72] gi|147929512|gb|EDK80506.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72] Length = 763 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|261337326|ref|ZP_05965210.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM 20093] gi|270277699|gb|EFA23553.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM 20093] Length = 878 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 113/738 (15%), Positives = 218/738 (29%), Gaps = 119/738 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P S + + ++ L+ + Sbjct: 74 AAAEMRERLEALIGPEAQRMWVSTFHSACVRILRRNGESV-----GLKSGFSIYDTADC- 127 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKST 123 L + K + I + D K +L Q + + F Sbjct: 128 ERLIKLIASDLNVDIKRFTPRNILARISDYKNQLISWQTQLATYAADYKPGMRGYQFGRI 187 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + A Y+ + +DF+DLI+ T +LL+ + IL+D Sbjct: 188 GNVEELYAVMYAEYQHRLRMANAVDFDDLIMRTVELLQTDP---QVADYYRNRFRFILVD 244 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR--TLFAVGDEKQSIYSFHGAEPKRVLREK 241 E QDT+ Q+ +IR L ++ VGD QSIY+F GA+ + + Sbjct: 245 EYQDTNHAQYVLIRELAGIDQAKSGGAGGRPQASVTVVGDSDQSIYAFRGADISNIQDFE 304 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I L ++RST IL + V + E + Sbjct: 305 QDFPN--------ARTIMLEQNYRSTQTILDAANAVIANNEGRKPKK------------- 343 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW V S +A + A IA + + Sbjct: 344 --------LWTAVGSGELITGYAA--------------DNAQLEAHWIAQELLRL----- 376 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 + ++ D+ ++ R + + + + +KD Sbjct: 377 ----NTQEGVRFCDMAIMYRANAQSRALEEGL----IRAHVPYQLVGGTKFYERREVKDA 428 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN----- 475 MA + I++ D+++ +L P + E T ++ +++ + Sbjct: 429 MAYLQAIVNPADNVNVRRILNVPKRGLGARAEALVAAHADEIGGTFWQALEQADSIEGMT 488 Query: 476 -CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 + + + L A P +L ++ + ++ L Sbjct: 489 ARTANPLRRFRDLMVSLRQFAAEHDSKPSAIVAQVLKESGLLEELRKSDDPQDASRVENL 548 Query: 530 DEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPV 587 + + EQ + SL + + + + +V +MT+HTAKGLE PV Sbjct: 549 SQLQSVAAEYEQTTPDASLAGFLETTALVADSDQLPGEQEDTGKVTLMTLHTAKGLEYPV 608 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VFL F H + E Sbjct: 609 VFLTGMEQGTFPHS----------------------------------RAMEDDTELSEE 634 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YVG+TRA L + + + + ++N+ + + K+ + + Sbjct: 635 RRLAYVGITRAKRHLYVTRAAVRAQWGQANEMLPSQFLDEIPDKLIDWKRREAGIERMRS 694 Query: 708 EWIAYEWSTHHPENTPLE 725 W + + + Sbjct: 695 SWGDDDDEFGGWVDDEPQ 712 >gi|25011258|ref|NP_735653.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae NEM316] gi|23095682|emb|CAD46868.1| Unknown [Streptococcus agalactiae NEM316] Length = 759 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 122/774 (15%), Positives = 242/774 (31%), Gaps = 139/774 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61 G ++ L ++ + + V+ N + ++A L A+Q Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87 Query: 62 ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107 E + + F Q+ ++ + I + + D + L + Sbjct: 88 HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D K + Y+E +++ +DF+DLI+ T L + Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL + V + +N + Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW +Q + + + A Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI N++ KD VL R + I I Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D++A + + D++SF ++ P + KI + ++ Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 436 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + I L + + +L + + Sbjct: 437 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496 Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571 E I+ ++EFL+ T + + L L L + + E Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ VF Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA L + + + K++ + + Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + + + + + E T + L++ ++ + ++ +L + Sbjct: 643 LIQHQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 696 >gi|148985059|ref|ZP_01818302.1| methionine aminopeptidase [Streptococcus pneumoniae SP3-BS71] gi|147922757|gb|EDK73874.1| methionine aminopeptidase [Streptococcus pneumoniae SP3-BS71] Length = 624 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 27 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 83 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 84 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 132 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 133 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 166 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 167 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 208 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 209 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 257 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 258 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 317 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 318 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 377 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 378 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 435 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 436 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 461 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 462 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 513 >gi|300863743|ref|ZP_07108674.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506] gi|300338250|emb|CBN53820.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506] Length = 794 Score = 302 bits (774), Expect = 2e-79, Method: Composition-based stats. Identities = 113/691 (16%), Positives = 225/691 (32%), Gaps = 121/691 (17%) Query: 8 SLNESYELIYK-----DLWPLPYFQVSDINKYVSLSMETGNP----------TILKKAQT 52 + E E I K + + + +G T Sbjct: 79 AAREMKERIEKLFATGQAEAKYGKPLEALAPDEQARLRSGVYRNYIKPLWVGTFHSLCAR 138 Query: 53 LQQA----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108 + + Q + S + + K+I+T+++N + + + Sbjct: 139 ILRYDIEKFQDEKGRRWRKNFSIIDESDAQSLVKDIVTRQLNLDDKKFEPR--NVRYAIS 196 Query: 109 KIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 +++ + + + + + Y++A N LDF+DLI L + + Sbjct: 197 NAKNQGLSPREVELEQPNYRGKVIADAYNLYQDALAANNGLDFDDLIRVPVQLFSQNES- 255 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQS 225 + Q+ +HIL+DE QDT+ +Q+++IR L + + T+ R++F VGD Q+ Sbjct: 256 --VLGYWHQKFSHILVDEYQDTNRVQYDLIRLLATNNEDPQTFTNWERRSIFVVGDVDQA 313 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IYSF A+ K +L ++ + + ++++L ++RS +IL + + Sbjct: 314 IYSFRMADFKILLDFQKDFGDGLADDDTR-TMVKLEENYRSRDNILHAANALIENNTERI 372 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 T + D + + Sbjct: 373 DKVLRPTR----------------------------GEGEPICVERADDEIQE------- 397 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A + I+ ++ + ++ D +L R + + I Sbjct: 398 AEFVTNEITGLVRKNP--------ELKWGDFAILYRTNAQSRNFEECL----VRWSIPYN 445 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TE 464 D +KD++A R I++ D +S + ++ +P + ++ + Sbjct: 446 LVGGLKFYDRKEVKDVLAYLRLIVNPADTVSLLRIINTPRRGIGKATTDRLVQAAQQLNI 505 Query: 465 TVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++ E + A ++ I + S + IL + Sbjct: 506 PLWDILVDEESVNTLAGRTAKPIIEFMRTIRKWQEEVANTSASEVVQGILEESGYIDELK 565 Query: 519 SRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRI 574 + +E D + E N + E+ + +L + L + + V + Sbjct: 566 KQGTDEAEDRIENIKELYNAVQQFEEENAEE-AKLENFLASAALSSDMDSMKEEESRVSL 624 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE PVVFLV + H I Sbjct: 625 MTLHAAKGLEFPVVFLVGMEQGLLPHFRSLDDPI-------------------------- 658 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA ++L I Sbjct: 659 --------ALEEERRLCYVGITRAQERLFIT 681 >gi|291531717|emb|CBK97302.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Eubacterium siraeum 70/3] Length = 1235 Score = 302 bits (774), Expect = 2e-79, Method: Composition-based stats. Identities = 153/964 (15%), Positives = 300/964 (31%), Gaps = 170/964 (17%) Query: 87 QEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145 + + + E LKK+ ++ K + A L + Y E K++ Sbjct: 301 KAHREGVKSVFEKYLKKTCEKITSFESDM--DKSLPAVTALKNLVLRFDKAYCEEKQRRN 358 Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 DF D +L + + + I++DE QD++ +Q+E+ + LTE+ Sbjct: 359 CADFSDAERGAYRMLCENGEKV----RERSAFSLIIVDEFQDSNELQYEIFKMLTEN--- 411 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 + L+ VGD KQSIY F GA+P+ + F + L +FR Sbjct: 412 -------KQGLYFVGDIKQSIYGFRGAQPEVFSSICK---------SDDFDKLPLNENFR 455 Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 S ++ ++ +F + D R L + DS + Sbjct: 456 SNRCVIDGINTLFDRMMTEENGGVDYAENGR-------------LICGLEKDSDSPIANE 502 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385 ++ ++++ A IA I MI + K R D +++R K+ Sbjct: 503 DKTEVCIVSEKDRKNAVVTEAAYIAARIKQMIAQGYKVGSDK-RPCTEDDFAIIMRSPKN 561 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 I L + ++V + + L D I+ +++L + I +D +L SPL Sbjct: 562 --RIADYVNVLTAN-GLNVTYSQKASLLDRPEIRLMLSLLKVINDPYNDTELAKVLMSPL 618 Query: 446 FNFSEDDIFKI--------------------------------CTQRHETETVYEYIQKF 473 + F+ DD+ ++ ++ V + ++ + Sbjct: 619 YCFTADDMARLRTGTFGFDISKIRAECADELEKYCLGTKEIVGMKRKPLYSCVMQAVRGY 678 Query: 474 ANCGISKFQH-------------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-IS 519 K + + + A SP + I + + Sbjct: 679 DTSEYEKLHELTKDIKPDAKCAVFVNDLDSFRNAATASSPQELIRSIYDRISADELLSVG 738 Query: 520 RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 L+ +++ +L +LI LE + H V+IM+ H Sbjct: 739 DDPATRQANLELLVSYAREYSDYKDGGTLGDLIFNLENMGGLTAAQTAGGHG-VKIMSTH 797 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGL+ PVVF+ + S + + I SK ++ + Sbjct: 798 MSKGLQFPVVFVANCASSFNDDDYTGDVVISEEYAVASKSVDISTMSKIQSPAYHAAAQE 857 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---------------KSNQRTWYD 683 +KK E RLLYV TRA ++LI + + + ++ K N ++ Sbjct: 858 VKKQLASEEMRLLYVAATRAENKLIFTANISKACDEYMSVLDVNRAGKKVGKCNGSSYLS 917 Query: 684 MV--------------YDSFHNDERVKKIKLTNSINKDEW--------IAYEWSTHHPEN 721 + + V+ I + DE E + + ++ Sbjct: 918 WLIEALSAECDKVNDMQSGIIDYGDVRYIFYPLAYGGDEHSLTIPALNTGAEKADEYTDD 977 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------ 775 + ++ KKL + + + + ++ Sbjct: 978 KNNDSTGIAVDEQFRSELEKKLNAAYAYEPLTKISAKFTATELAANLREKNGEENYGLFI 1037 Query: 776 ------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 RG HKL++ I A E + Sbjct: 1038 GKPSFLTENNTGKLSGKRRGDAYHKLMEHIPFEKILSEDEISDYIKNSTAGFLDKAEQNS 1097 Query: 824 L-LLSITRLLENPMMTTAMSCD----SYSEVSVSGKIN----------------CPKKDI 862 + I N + + D Y E + +++ + Sbjct: 1098 INAGDIAGFYGNDVAKRIVKADKNGKLYREYPIFHRLDTQCYDPAIFGADSREMLEGAEP 1157 Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 + G D I I + +YKT + + + QL IY++ L+ + + Sbjct: 1158 YVQGIADMFFIEDDGIVLVDYKTDKT--DDEQKYKDDYKLQLDIYKEALEKEFSV-PVKQ 1214 Query: 923 LLIY 926 ++IY Sbjct: 1215 MIIY 1218 >gi|22300001|ref|NP_683248.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1] gi|22296186|dbj|BAC10010.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1] Length = 773 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 110/646 (17%), Positives = 205/646 (31%), Gaps = 114/646 (17%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + +A + YE A KN LDF+DLI+ T LL++R Q+ Sbjct: 195 AQEQRSPAGRVAAEVYRCYEAALAKNNALDFDDLILRTVHLLQQRPER---LDYWHQQFQ 251 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRV 237 HIL+DE QDT+ Q++ IR L + + + R++F VGD QSIYSF A+ + Sbjct: 252 HILVDEYQDTNRTQYDFIRLLATNGTPPQEFRNWGNRSIFVVGDVDQSIYSFRCADFTIL 311 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 + ++ R + + ++I+L ++RS A+IL + + T Sbjct: 312 MNFQQDFGDRLPDQQTR-TMIKLEENYRSVANILQAANYLIEHNSERIDKVLRPTKAPG- 369 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + + A I I + Sbjct: 370 ----------------------------------PPIHCECCDTETDEAYFITQQIKALG 395 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 Q +L R + I + Sbjct: 396 SQSLEP--------QWGRFAILYRTNAQSRPFEEAL----VRANIPYTVVGGLKFYERKE 443 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYI 470 +KD++A R + + +D +S ++ P + + ++ +++ E + Sbjct: 444 VKDILAYLRLLQNPQDTVSLRRIINIPRRGIGKTSLDRLSDAAQTLGISLWDLIADTESM 503 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--- 527 A Q + I L + + ++ R++ + +E ++ Sbjct: 504 TPLAGRASRAVQQFVTLITRLRSLVDDIELPELVKTVIEETGYRRELENEGTDESLERLQ 563 Query: 528 VLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 L E +N + E N +SL + ++ V +MT+H AKGLE P Sbjct: 564 NLMELVNAAQQFSEDNEGASLSDFLNSSALASDLDT--LQEGEGVVSLMTLHAAKGLEFP 621 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VVFLV +F + + EE Sbjct: 622 VVFLVGMEQGLFPNFRSLNDPM----------------------------------ALEE 647 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YVG+TRA ++L + + ++ + LT + Sbjct: 648 ERRLCYVGITRAQERLFLTFAQSR---------------RLYGGREDTMPSQFLTELPPE 692 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + T + K ++ ++ P+ + Sbjct: 693 LLTGNVQRRPPRTAVTTVSPSRLSKAAASPWRVGDRILHPVYGEGE 738 >gi|15900955|ref|NP_345559.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4] gi|111657604|ref|ZP_01408340.1| hypothetical protein SpneT_02001214 [Streptococcus pneumoniae TIGR4] gi|14972562|gb|AAK75199.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4] Length = 763 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 103/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L S+ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNSQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|307708772|ref|ZP_07645234.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261] gi|307615138|gb|EFN94349.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261] Length = 763 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 100/592 (16%), Positives = 192/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMVLDLREQLDQLNITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTSDEPEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF + EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDQDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J] gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 755 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 112/623 (17%), Positives = 197/623 (31%), Gaps = 124/623 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156 + L + + D + + Y+E +++ +DF+DLI+ T Sbjct: 137 RSILGTISNAKNDLLDEMAYEAQASDMYS--QIVARCYKAYQEELRRSEAMDFDDLIMMT 194 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 L K + Q +I +DE QDT+ Q+++++ L F + + Sbjct: 195 LRLFDKNPE---VLSYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------QNI 241 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD QSIY + GA+ + +L ++ K ++ L ++RST IL + Sbjct: 242 CVVGDADQSIYGWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTILQAAND 293 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 V +N + LW ++ + D Sbjct: 294 VIRYNKNRKEKK---------------------LW-------TQNDQGEKIVYHRANDER 325 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + A IA TISNM + KD VL R + I Sbjct: 326 DE-------AVFIASTISNM---------CLELGKSFKDFAVLYRTNAQSRTIEEAF--- 366 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I I+DL+A + + D++SF ++ P + K+ Sbjct: 367 -LKSNIPYTMVGGTKFYSRKEIRDLIAYLNIVANPSDNISFERIVNEPKRGVGPGTLEKL 425 Query: 457 C-TQRHETETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 ++ E + + L S + +L Sbjct: 426 RLYAYDSQLSLLEASSNLFLSPLKGKAAQAITDLATLLTSLRQDLDHLSITELAEALLEK 485 Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRN--------EQNSYSSLQELISELEQYPP 559 +Q + E I+ ++EFL+ T +++ +L +++L Sbjct: 486 TGYLEQLKIQNTLESQARIENIEEFLSVTKNFDDNQSPTNDESGIDTLGRFLNDLALIAD 545 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 T EV +MT+H AKGLE PVVFL+ VF Sbjct: 546 TD--DDKTESAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------ 585 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 + EE RL YVG+TRA L + + + K+N Sbjct: 586 ----------------RASEDQDELEEERRLAYVGITRAEQILFLTNANTRTLFGKTNYN 629 Query: 680 TWYDMVYDSFHNDERVKKIKLTN 702 + + + + + Sbjct: 630 RPSRFLREISEDLLAFQGLARPA 652 >gi|270289913|ref|ZP_06196139.1| recombination helicase AddA [Pediococcus acidilactici 7_4] gi|270281450|gb|EFA27282.1| recombination helicase AddA [Pediococcus acidilactici 7_4] Length = 1238 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 123/860 (14%), Positives = 277/860 (32%), Gaps = 97/860 (11%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSL------LSSFFLTQKFTPQKNIITQEINKK 92 ++ + L+ +L L + P+ E Sbjct: 246 LQKAAANFQAEVAGLKTVIDQFDQPNWDALQQAMVNFKFAQLPRGKKPEVQEFNLEAKPL 305 Query: 93 SPDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 + K + + + K+++ + L + + + + + + K LDF Sbjct: 306 RNEFKAEFNGLVERYFKLKNDQLIAIFKDAREIMLKLIEVQQQFSDRFLQEKLTRRSLDF 365 Query: 150 EDLIINTNDLLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 DL +L+ + +R ++ N +++DE QD + +Q ++ ++ + Sbjct: 366 SDLEHFALQILQNQSEEGQAVRRNFQEKFNEVIVDEYQDINPLQETILTAVARE------ 419 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 P +F VGD KQSIY+F A+P + + R ++ +GQ I L +FRS Sbjct: 420 ---DPGNMFMVGDVKQSIYAFRMADPSLFISKSRRFKQ----SGQPDERIILAENFRSMQ 472 Query: 269 DILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 ++ + +F+ + ++ D+ ++ + + ++ Q Sbjct: 473 NVDDFTNLIFNQIMDQAVGEIAYDADAQLKFGAKYYPAEVQNDTEVLLFDDQQNENTADQ 532 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKR 383 E D + + IA I + T + R ++ DI +L Sbjct: 533 EPGAIITDKNDGQL------QMIAQRIKRLFADQTEVFDRDTQEMRPLKYSDIALLHSTG 586 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + I + Y I + ++ + +MAL + I + D+ +L+S Sbjct: 587 NNNLNIVDTFK----KYGIPIEVSNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRS 642 Query: 444 PLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGISKFQHVIKYIHELI 492 P+ E+++ + + +Y +F K + + Sbjct: 643 PIVGLDENELAFLRISKKNGHYFESVLYFQNEFKIDYQNEFQANLKRKIDQFLAQLQHFR 702 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551 ++Q C+ D I G + + L + E++S+ L + + Sbjct: 703 KLSQQCTLVDLLWEIYQETGYLDYVGGMPDGPQRQNNLHALYDRAQSYEESSFKGLFQFV 762 Query: 552 SELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 +E+ K + V++MT+H++KGLE P+VFL+D + + Sbjct: 763 RFVEKMREKNKDLAENPVVTDTEAVKLMTIHSSKGLEFPIVFLIDADHGFNNSDTKGRYV 822 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + + ++ + + + +I ++ E R+LYV +TRA +LI+ Sbjct: 823 LDRDAGMGITVKDFVHRLEVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIVTGA 882 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 + D ER K + I ++PE + + + Sbjct: 883 LKAATPTLEKWAQAADTGELLLPEAERGKAKNFLDWIGMAIMRVPSVMENYPEVSSRKLD 942 Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787 + + + +L + + +G Sbjct: 943 SFAGVEVK--------------------------LKVVNRADLLAGQRSDTGIEQGTP-- 974 Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLENPMMTTAMSCDS 845 L+ + + + I + A + + I R+ ++P Sbjct: 975 PTLEKMDVNSDINDADQIRAILNFKYHDIEATQTTAYQSVSEIKRVFDDPD--------- 1025 Query: 846 YSEVSVSGKINCPKKDIIIS 865 + + +D I Sbjct: 1026 ----KLEMDFSAVDRDQKIR 1041 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 81/271 (29%), Gaps = 22/271 (8%) Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + + + + H E T +++ ++ P KL Sbjct: 969 IEQGTPPTLEKMDVNSDINDADQIRAILNFKYHDIEATQTTAYQSVSEIKRVFDDPDKLE 1028 Query: 745 SPIKNDINEPYILNPS---TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801 + ++ + P D S +S + G H +LQ + + Sbjct: 1029 MDF-SAVDRDQKIRPQKRFVTDQLMTPRFMSEVSQPKPTEIGTATHLILQQLDLREPVTQ 1087 Query: 802 KNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMS--CDSYSEVSVSGKINC 857 + + SI E+ + ++ + E + S + Sbjct: 1088 AVIKDKIRELVMNQVLEEAVAKRIRINSILDFFESELGQLMLAHPEQVHREEAFSLLLPA 1147 Query: 858 PK--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLS 905 +D++I G ID + + +YKT +P + + + Q++ Sbjct: 1148 KGLFPNVVGNQDVLIHGIIDAYFELDGRVILLDYKTDFVLPGSPQQGIQKVIDRYQGQVN 1207 Query: 906 IYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935 +Y + L + K + L +S K+ I Sbjct: 1208 LYAQALSNIL-GKPVNEKYLYLLSIGKLVEI 1237 >gi|149006240|ref|ZP_01829952.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP18-BS74] gi|307127381|ref|YP_003879412.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B] gi|147762017|gb|EDK68979.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP18-BS74] gi|306484443|gb|ADM91312.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B] gi|332075042|gb|EGI85513.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17545] Length = 763 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|149003797|ref|ZP_01828629.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS69] gi|225861053|ref|YP_002742562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Taiwan19F-14] gi|237650760|ref|ZP_04525012.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI 1974] gi|237822347|ref|ZP_04598192.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI 1974M2] gi|298230846|ref|ZP_06964527.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255795|ref|ZP_06979381.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502897|ref|YP_003724837.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TCH8431/19A] gi|303254202|ref|ZP_07340314.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455] gi|303259750|ref|ZP_07345725.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293] gi|303262925|ref|ZP_07348860.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS292] gi|303264888|ref|ZP_07350804.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397] gi|303266868|ref|ZP_07352746.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457] gi|303268905|ref|ZP_07354690.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458] gi|147758243|gb|EDK65245.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS69] gi|225727044|gb|ACO22895.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Taiwan19F-14] gi|298238492|gb|ADI69623.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TCH8431/19A] gi|301802021|emb|CBW34750.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae INV200] gi|302598873|gb|EFL65907.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455] gi|302635902|gb|EFL66402.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS292] gi|302638955|gb|EFL69415.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293] gi|302641523|gb|EFL71885.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458] gi|302643566|gb|EFL73835.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457] gi|302645576|gb|EFL75807.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397] gi|327389355|gb|EGE87700.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04375] gi|332075421|gb|EGI85890.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41301] Length = 763 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|182684161|ref|YP_001835908.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14] gi|182629495|gb|ACB90443.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14] Length = 763 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|15903039|ref|NP_358589.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae R6] gi|116515714|ref|YP_816449.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39] gi|15458610|gb|AAK99799.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6] gi|116076290|gb|ABJ54010.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39] Length = 763 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|167760475|ref|ZP_02432602.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704] gi|167661841|gb|EDS05971.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704] Length = 743 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 110/616 (17%), Positives = 198/616 (32%), Gaps = 117/616 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + YE+ + N LDF+DL++ T L + A + + +I++DE QDT+ Sbjct: 170 AEVYEEYEKQLRANNALDFDDLLVKTVQLFQT---QADMLEYYQERFRYIMVDEYQDTNT 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+E+IR L + R L VGD+ QSIY F GA K +L + + + Sbjct: 227 VQFELIRLLASKY----------RNLCVVGDDDQSIYKFRGANIKNILNFEHVFE----- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST++IL + V + + L Sbjct: 272 ---DAKVIKLEQNYRSTSNILNAANAVIRNNRGRKDKT---------------------L 307 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + ++ + + + + A I I + Sbjct: 308 W-------TDNGDGEKLEFRQFDTAYDE-------AEYIVGDIREHVDRGE--------- 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D +L R + + + I IKDL++ + + + Sbjct: 345 CTYNDNAILYRTNAQSRIFEEKF----VNANIPYKIVGGINFYARREIKDLLSYLKTVDN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQHV 484 +DDL+ ++ P I ++ YE ++ G SK + Sbjct: 401 GQDDLAVRRIINVPKRGIGLTSINRVQEYAVRHEVGFYEALRAVDLIPNIGRGASKLESF 460 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 + I AQ S I+ + + E I+ +DE ++ + E Sbjct: 461 VALIEHFKTDAQEMSISRLMKEIIEETGYVESLEAEDSEEAEARIENIDELMSKIVAYED 520 Query: 542 -----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 N S+L + E+ + N + V +MT+H+AKGLE P V+L Sbjct: 521 TCEEMNEPSTLSGFLEEVALVADID--SLDENSDYVVLMTLHSAKGLEFPHVYLAGLEDG 578 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F I EE RL YVG+T Sbjct: 579 IFPSYMT--------------------------------ITADDPEEVEEERRLCYVGIT 606 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA L + + ++ + + + + AY + Sbjct: 607 RAEKALTLTCARSRMIRGETQYNKMSRFLKEIPMELLSTGAVFEKEKEEPAKQAAYMQAR 666 Query: 717 HHPENTPLEREETIKQ 732 + +Q Sbjct: 667 QAFRTKAFTAPKPARQ 682 >gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909] gi|77407064|ref|ZP_00784070.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B] gi|77413012|ref|ZP_00789214.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515] gi|76563033|gb|ABA45617.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909] gi|77160910|gb|EAO72019.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515] gi|77174333|gb|EAO77196.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B] Length = 759 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 122/774 (15%), Positives = 242/774 (31%), Gaps = 139/774 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61 G ++ L ++ + + V+ N + ++A L A+Q Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87 Query: 62 ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107 E + + F Q+ ++ + I + + D + L + Sbjct: 88 HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D K + Y+E +++ +DF+DLI+ T L + Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL + V + +N + Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW +Q + + + A Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI N++ KD VL R + I I Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D++A + + D++SF ++ P + KI + ++ Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 436 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + I L + + +L + + Sbjct: 437 LDSSSNVMISPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496 Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571 E I+ ++EFL+ T + + L L L + + E Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ VF Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA L + + + K++ + + Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + + + + + E T + L++ ++ + ++ +L + Sbjct: 643 LIQYQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 696 >gi|148998353|ref|ZP_01825795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70] gi|307067730|ref|YP_003876696.1| superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|147755750|gb|EDK62795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70] gi|306409267|gb|ADM84694.1| Superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200] Length = 763 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|329116495|ref|ZP_08245212.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD 2020] gi|326906900|gb|EGE53814.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD 2020] Length = 764 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 118/765 (15%), Positives = 239/765 (31%), Gaps = 139/765 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--------- 56 G ++ L ++ + + V+ N + +A L A Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRDRALALNPATIDTLIATF 87 Query: 57 ----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIR 111 + E + F Q+ ++ + + + D K+ ++ + Sbjct: 88 HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKSLNLDPKKWSERSILGTISNAK 147 Query: 112 DRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + K+F++ A + + Y+E +++ +DF+DLI+ T L + Sbjct: 148 NDLLDEKIFEAQAADMYSQIVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDTN---KDV 204 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 Q +I +DE QDT+ Q+++++ L F + + VGD QSIY + Sbjct: 205 LAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIYGW 254 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + +L ++ ++ L ++RST IL + V +N + Sbjct: 255 RGADMQNILDFEKDYP--------SAKVVLLEENYRSTKTILQAANDVIKNNQNRRDKK- 305 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + +Q + D + A I Sbjct: 306 --------------------LW-------TQNADGEQIVYYRANDEHDE-------AVFI 331 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A TISNM + KD VL R + I I Sbjct: 332 ASTISNMCQGNEK---------NFKDFAVLYRTNAQSRTIEEAF----LKSNIPYTMVGG 378 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 I+D+++ I + D++SF ++ P + K+ ++ + Sbjct: 379 TKFYSRKEIRDVISYLNIIANPSDNISFERIVNEPKRGVGPGTMEKLRLFAFQNEMSLMD 438 Query: 469 YIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 + + + + + ++ + + Sbjct: 439 ASSNLLMSPLKGKAAQSIMDLANLLLDFRLKLDNLTITELTEQLIDQSGYLEALRIQNTL 498 Query: 524 E---VIDVLDEFLNFTLRNE---------QNSYSSLQELISELEQYPPTIKRAHSANHNE 571 E I+ L+EF++ T + ++ L +++L T Sbjct: 499 ESQARIENLEEFISVTKNFDDNQNNVEEDESGLDRLGRFLNDLALIADTDNGDADVAE-- 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ VF Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + EE RL YVG+TRA L + + + KS+ + + Sbjct: 587 ----RASEDPAELEEERRLAYVGITRAEQVLFLTNANTRTLFGKSSYNRPTRFLREISDQ 642 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + + + + + + ++ + L + ++ + Sbjct: 643 LLSYQGLARPANSSFGVRYSQQKTSEFGQGMSLSQAIQARKSQAQ 687 >gi|298492943|ref|YP_003723120.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708] gi|298234861|gb|ADI65997.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708] Length = 776 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 104/604 (17%), Positives = 205/604 (33%), Gaps = 101/604 (16%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 K I+T+++N S + K + +++ + + F+ + + + + Y++ Sbjct: 160 KEIVTKDLNLDSKKFEP--KSVRYAISNAKNQGFSPEEFEQEQPNYRGRVIAEVYSLYQD 217 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 N LDF+DLI+ L ++ + + HIL+DE QDT+ Q+++I+ L Sbjct: 218 KLAGNNALDFDDLILIPTRLFRQNE---QVLGYWHGRFCHILVDEYQDTNRTQYDLIQLL 274 Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + K+ + R++F VGD QS+YSF A+ +L ++ + + +++ Sbjct: 275 VTNDENRKSEWNWENRSVFVVGDADQSVYSFRMADFTILLEFQQNFGDGLEDDDTR-TMV 333 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL +++ +T Sbjct: 334 KLEENYRSCENILQAANELIENNTQRIDKILKATR------------------------- 368 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 ++ D + + A + + + + + Sbjct: 369 ---DAGEEIHCYKAEDEIEE-------AAFVINQTRTL--------EHHNPELNWGNFAI 410 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + L Y+I D IKD++A R I + D +S + Sbjct: 411 LYRTNAQSRPFED----LLVKYQIPYTVVGGMKFYDRKEIKDIVAYLRAINNPADTVSLL 466 Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYIHEL 491 ++ +P + I + + T++E + A K I + Sbjct: 467 RVINTPRRGIGKATIEALVNASQQLGTTLWEILTDETSVNTLAGRSAKSVNGFAKIIQKW 526 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548 + IL Q ++ +E ++E N + ++ + Sbjct: 527 QEQISKIPGSEILQGILEDSGYVQDLENQGTDEADNRIQNVNELYNAISQFQEENEGDDI 586 Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 L L+ + V +MT+H +KGLE PVVFLV +F Sbjct: 587 SLQGFLQSAALSSDLDNLKEGKTTVSLMTLHASKGLEFPVVFLVGLEQGLFPG------- 639 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 ++ EE RL YVG+TRA ++L +C Sbjct: 640 ---------------------------YRSLQDPASLEEERRLCYVGITRAQERLYLCHA 672 Query: 668 SNTS 671 Sbjct: 673 RERR 676 >gi|17231987|ref|NP_488535.1| DNA helicase II [Nostoc sp. PCC 7120] gi|17133631|dbj|BAB76194.1| DNA helicase II [Nostoc sp. PCC 7120] Length = 772 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 110/618 (17%), Positives = 205/618 (33%), Gaps = 103/618 (16%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 K I+T+++N + + + +++ + + F+ + + + Y++ Sbjct: 158 KEIVTKQLNLDDKKFEPR--SVRYAISNAKNQGLSPQEFEKDQPNYRGRVIADVYNRYQD 215 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 +N LDF+DLI+ L ++ + + ++ HIL+DE QDT+ Q+++IR L Sbjct: 216 KLAENNALDFDDLILIPTRLFQQNE---QVLGYWHRKFCHILVDEYQDTNRTQYDLIRLL 272 Query: 200 TEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 T + K+ R++F VGD QSIYSF A+ +L + + + +++ Sbjct: 273 TTNGEEKKSAWEWQNRSVFVVGDADQSIYSFRMADFTILLDFQNQFGDGLPDEDTR-TMV 331 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL V +++ T Sbjct: 332 KLEENYRSCENILQVANELIENNTQRIDKVLKPTR------------------------- 366 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 ++ + L + A + I + + + + Sbjct: 367 ---GAGEEIYCHKADNELEE-------ADFVIRQIRTL--------EHQNPELDWGSFAI 408 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + L +I D IKD++A R I + D +S + Sbjct: 409 LYRTNAQSRPFEE----LLVRNQIPYTVVGGMKFYDRKEIKDVIAYLRAISNPSDTVSLL 464 Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYIHEL 491 ++ +P + I + + T++E + A + K I+ Sbjct: 465 RVINTPRRGIGKATIDNLINASQQLGTTLWEILSDETSVNTLAGRSAKGVNNFAKMINRW 524 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-EQNSYSSL 547 + IL Q S+ +E D + E N L+ E+N SL Sbjct: 525 QEQIATAPVTEIVMGILEDSGYVQDLQSQGTDESEDRIQNVQELYNAVLQFQEENEDVSL 584 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + V +MT+H +KGLE PVVFLV +F Sbjct: 585 TAFLQSTALSSDLDN--LKEGQTAVSLMTLHASKGLEFPVVFLVGLEQGLFPGYRSLSDP 642 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA ++L + Sbjct: 643 ----------------------------------AALEEERRLCYVGITRAQERLYLSFA 668 Query: 668 SNTSNEKKSNQRTWYDMV 685 + Sbjct: 669 RERRLYGSREPAMRSQFL 686 >gi|301800058|emb|CBW32653.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae OXC141] Length = 763 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|149279369|ref|ZP_01885500.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39] gi|149229895|gb|EDM35283.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39] Length = 747 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 102/649 (15%), Positives = 208/649 (32%), Gaps = 115/649 (17%) Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + L + Y + K +DF+DL+ TN LLK + K Q+ + Sbjct: 141 AEDVANKRPLLGVIYETYTKRCFKAGAMDFDDLLFKTNVLLKNHPD---VLNKYQQKFKY 197 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +++DE QDT+ Q+ +++ L + + + VGD+ QSIY+F GA + +L Sbjct: 198 LMVDEYQDTNFSQYTIVKKLAAAY----------QNICVVGDDAQSIYAFRGANIQNILN 247 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 +R + +L ++RST +I+ V + + + +N + S Sbjct: 248 FERDYP--------DLKVYKLEQNYRSTQNIVEVANSIIANNKNQLEKNVFS-------- 291 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 D++ + + ++ D I+A I Sbjct: 292 -------------------DNESGDRIKVQRAFTD----NEEGKIVAEAIVQE------- 321 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + D +L R + + R L + IK Sbjct: 322 ------RSSKGYNYNDFAILYRTNAQSRAMEEALRKL----NVPYKIYGGLSFYQRKEIK 371 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGI 478 DL+A R + D+ + ++ P + + K + T+++ I Sbjct: 372 DLIAYFRLTFNPADEEAIKRVINYPKRGLGDTTVEKILVAADQHDTTMWQVICNPQQYIQ 431 Query: 479 SK----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 + I A+ ++ I ++ S +E + + E Sbjct: 432 GRIANQLNDFAVMIQSFAAEAKKLDAYETALYIAQHSGILKELHSDTTDEGRGRHENVQE 491 Query: 532 FLNFTLRN---EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 LN E SL + ++ K N + V +MT+H++KGLE V Sbjct: 492 LLNGIKEFGEREDIEDRSLAVFMQDIALLTNDDKGGDDKNKDTVSLMTIHSSKGLEFKNV 551 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 F+V +F + ++ EE Sbjct: 552 FVVGLEENLFPSQMSLNS----------------------------------RTDLEEER 577 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-KLTNSINKD 707 RL YV +TRA +L + ++ + + ++ + +++++D Sbjct: 578 RLFYVAVTRAEKKLTLTYATSRYRWGTLTNCEPSRFIDEINARYLEIEVVKPAKSTLSED 637 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 + + S +T + + P+ + + + P Sbjct: 638 SFQSERKSWSQQRDTFSKPKPASASGSSTSTAPRPKTTTMLPKAHVPTP 686 >gi|227487771|ref|ZP_03918087.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542414|ref|ZP_03972463.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092273|gb|EEI27585.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181612|gb|EEI62584.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 735 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 115/626 (18%), Positives = 199/626 (31%), Gaps = 132/626 (21%) Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + Y+E ++ LDF+DLI + ++ + + H+L+DE Q Sbjct: 164 HKVIGQVYGFYQERLRRANALDFDDLIGEVVRIFREHPD---VTAYYRRRFRHVLVDEYQ 220 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+E I +L G L VGD QSIY+F GA + + +R Sbjct: 221 DTNHAQYEFISALVGKDGTG---------LCVVGDADQSIYAFRGATIRNIREFERDFPN 271 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + I L ++RST +IL+ + V S E+ + Sbjct: 272 --------ATTILLEQNYRSTQNILSAANAVISHNEHRGKKN------------------ 305 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW D P+ + + AR IA TI + Sbjct: 306 ---LW------TDQGAGPKIIGYVA--------DREEDEARFIASTIDD----------- 337 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 R + ++ V+ R + +I + I + ++D++A R Sbjct: 338 --RNLPYNEVAVMYRTNAASRVIEDVF----IRTGIPYRVVGGTRFYERKEVRDIIAYLR 391 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGIS 479 + + +D++S ++ +P + + + E ++YE ++ G + Sbjct: 392 VVDNPDDEVSLRRIVNTPRRGIGDKALAFVTAFASRENISLYEAMRHVDEVDYLGARGRN 451 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + EL A D LI R + +D L+E + + Sbjct: 452 AIAKFVAMMEELR--AGTQEVGDLINLITDVSGYRDELEKSKDPRDEARLDNLNELVAYA 509 Query: 537 LRNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 Q + S+Q + + + A V +MT+HTAKGLE P VFL Sbjct: 510 RDFAQQARANDEDDSVQAFLERVSLVADADQI-PDAGQGVVTLMTLHTAKGLEFPYVFLP 568 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 F H EE RL Sbjct: 569 GWEEGQFPHMRSLG----------------------------------NTEEIEEERRLA 594 Query: 652 YVGMTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 YVG+TRA QL I + T+ E + ++ ++ Sbjct: 595 YVGITRARKQLFISRALLRIAWGNPQTNPESRFLGDIPSSLIEWEREEPAYGVGGGYSSY 654 Query: 704 INKDEWIAYEWSTHHPENTPLEREET 729 D WI + + Sbjct: 655 GGNDGWIGGPRRVKKKPASSQSVPAS 680 >gi|197302046|ref|ZP_03167107.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC 29176] gi|197298855|gb|EDY33394.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC 29176] Length = 767 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 116/735 (15%), Positives = 222/735 (30%), Gaps = 142/735 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ +L Sbjct: 27 GAGSGKTRVLTHRIAYLIEERNVNPWNILAITFTNKAAGEMRERVDSLVGFGSESIWVST 86 Query: 66 FSLLSSFFL-----------------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108 F + L T + +++ + KE+ Sbjct: 87 FHSMCVRILRRFIDRLGYDNRFTIYDTDDQKTLMKEVCKKVAIDTKVFKER--SLMSAIS 144 Query: 109 KIRDRFNTYKMFKSTL----ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++ F+ A L +AK + YE K N LDF+DL++ T LL+ + Sbjct: 145 SAKNELILPDEFELNAGGDFAKLKIAK-VYREYEAQLKANNALDFDDLLVKTVQLLQTQP 203 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + +I++DE QDT+ +Q++++R L + R L VGD+ Q Sbjct: 204 D---VLENYQERFRYIMVDEYQDTNTVQFQLVRLLAGKY----------RNLCVVGDDDQ 250 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY F GA + +L + +I+L ++RST +IL ++V + + Sbjct: 251 SIYKFRGANIRNILDFEHEF--------SDACVIKLEQNYRSTGNILNAANRVIANNKGR 302 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + + G+ V L + + Sbjct: 303 KEKTLWTAN---------GEGELVHLRQFDTGYDE------------------------- 328 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 A IA I + D VL R + L+ + + Sbjct: 329 -ADFIAEDIKKEVRAG----------ASYNDHAVLYRTNAQSRLLEEKFVAM----NVPY 373 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 IKDL+A + I + DD++ ++ P I +I E Sbjct: 374 KIVGGVNFYARREIKDLLAYLKTIDNGMDDIAVRRIINVPKRGIGLTTINRIQESAAERG 433 Query: 465 TVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + +K I + S D ++ + Sbjct: 434 LGFYETLMAPELIPGIGRSAAKLDSFAALIEYFKGLTGQMSITDLLREVIEKTGYMESLD 493 Query: 519 SRFGNEVI---DVLDEFLN-----FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570 S + + +DE +N +++ ++L + E+ + + Sbjct: 494 SEDKEDAQARKENIDELINKAAAYEEAAEDRDEPATLSAFLEEVALVADID--SLDEEQD 551 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V +MT+H+AKGLE P V+L +F Sbjct: 552 YVVLMTLHSAKGLEFPHVYLAGMEDGLFPSYMT--------------------------- 584 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 I + EE RL YVG+TRA +L + ++ + + Sbjct: 585 -----ITSDDRDDLEEERRLCYVGITRAEQELTLTCARRRMVRGETQYNKISRFIKEIPA 639 Query: 691 NDERVKKIKLTNSIN 705 ++ Sbjct: 640 ELLDTGSRRIEPETE 654 >gi|168491981|ref|ZP_02716124.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC0288-04] gi|183573779|gb|EDT94307.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC0288-04] Length = 763 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|300813299|ref|ZP_07093654.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512570|gb|EFK39715.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 720 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 190/551 (34%), Gaps = 120/551 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K+N LDF+DL+I T +LL++ +R + +I +DE QDT+ Sbjct: 167 AGKIYEFYQNKLKENNALDFDDLLIKTVELLREFPD---VREFYQNKFKYIFVDEYQDTN 223 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 IQ+++I+ L VGD QSIY + GA+ +L ++ Sbjct: 224 SIQYKLIKLFCG----------KAPNLTVVGDNDQSIYKWRGADISNILNFQKDFP---- 269 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 II+L ++RST +IL V + V S Sbjct: 270 ----GAKIIKLEQNYRSTQNILDVANSVIKNNPQELSKS--------------------- 304 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + ++ + + S +E + + I + + Sbjct: 305 LW-------TKRQGGEKVYYKEFSVSNEEEFA-------VTNKILGL----------NYK 340 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 +D+ +L R + + I+ D +KD+MA + I Sbjct: 341 GYSFEDMAILYRTNAQSRGFEESL----SREGINYKIVGGLRFYDRAEVKDIMAYLKVIN 396 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483 + D+++ + ++ P + I KI + +++E I+ N + Sbjct: 397 NPLDEIALLRIINKPKRGIGDSSIEKIRDYAINNNLSMFEVIKNIENYEDLNVRAKKNIK 456 Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 I+ LI + + L++ + + ++ E +DE ++ + Sbjct: 457 SFANLINLLIERKDSLNVGELAELVVDESQYVEDLKNQNTLEARTKISNIDELISNIMSY 516 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++ L L +++ V +MTVH AKGLE +VFLV +F Sbjct: 517 DKE-----TSLSDYLSNMSLLTDVDKTSDAKGVNLMTVHAAKGLEFKIVFLVGMEEGLFP 571 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 +I+ + EE RL YV +TRA Sbjct: 572 -----------------------------------IIRQDEDEDIEEERRLCYVAITRAE 596 Query: 660 DQLIICKHSNT 670 D L I Sbjct: 597 DLLFISSSKTR 607 >gi|301794204|emb|CBW36623.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae INV104] Length = 763 Score = 302 bits (772), Expect = 3e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R] gi|22534170|gb|AAN00024.1|AE014244_1 ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R] Length = 759 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 122/774 (15%), Positives = 243/774 (31%), Gaps = 139/774 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61 G ++ L ++ + + V+ N + ++A L A+Q Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87 Query: 62 ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107 E + + F Q+ ++ + I + + D + L + Sbjct: 88 HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D K + Y+E +++ +DF+DLI+ T L + Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL + V + +N + Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW +Q + + + A Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI N++ KD VL R + I I Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D++A + + D++SF ++ P + KI ++ ++ Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQSMSL 436 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + I L + + +L + + Sbjct: 437 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSNLDSLTVTEITENLLDKTGYLEALQVQN 496 Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571 E I+ ++EFL+ T + + L L L + + E Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ VF Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA L + + + K++ + + Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + + + + + E T + L++ ++ + ++ +L + Sbjct: 643 LIQYQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQSQVTAQLQA 696 >gi|194397544|ref|YP_002037718.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54] gi|194357211|gb|ACF55659.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54] Length = 763 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVXKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNTQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|289423398|ref|ZP_06425202.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius 653-L] gi|289156156|gb|EFD04817.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius 653-L] Length = 786 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 128/709 (18%), Positives = 245/709 (34%), Gaps = 133/709 (18%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 LT K + + + L ++ ++D+ + ++ Y + S L + Sbjct: 116 LTLIKECIKALDLNDKKFEPRALIAEISSAKDKLMDPKE----YARYVSGDFWLDTVAQV 171 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y+E +N LDF+DLI T +LLK + + +I++DE QDTS Q+ Sbjct: 172 FALYQERLMRNGALDFDDLIFKTVELLKSNED---VLNFYRARFRYIMVDEYQDTSKAQY 228 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E+++ L + + VGD+ QSIY + GA+ + +L ++ K Sbjct: 229 ELVKLLA----------MGHQNICVVGDDDQSIYGWRGADIRNILEFEKDYNKVF----- 273 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 +++L ++RST IL + + + + LW Sbjct: 274 ---VVKLEQNYRSTQVILDTANHLIANNIERKKKR---------------------LW-- 307 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + + + + + + A + I + N + Sbjct: 308 -----SDKKDGELVKVKCLRNEVEE-------ANYVVNEI---------YENASRTNRPY 346 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 D VL R I N ++I + IKDL+A R I++ +D Sbjct: 347 SDYAVLYRANAQARAIEDAL----NRFQIPYNIYGGTKFYERKEIKDLLAYIRVIVNPQD 402 Query: 434 DLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISKFQHVIK 486 D+S ++ P I K+ E++Y + + + Sbjct: 403 DISVKRIINIPRRGIGLKTIEKLEDRASMMKESLYSVLLDVDNNSDISTKAKKGINEFVD 462 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-------------SRFGNEVIDVLDEFL 533 I +A+ SP IL + ++ + ID L EF+ Sbjct: 463 LIGIFRSLAESYSPSKMVEKILEMTGYTLELEEIVKKNEKMENGKAQEAQDRIDNLMEFI 522 Query: 534 NFTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 + + EQ+ +LQ ++ + T +V +MT+H++KGLE PVV Sbjct: 523 SIAIEYEQSDVFMEEAKNLQNFLANISLASDTEGEEEEFVE-KVSLMTLHSSKGLEFPVV 581 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 F++ ++F ++ I +++S+ EE Sbjct: 582 FMIGMEEKIFP--------------------------------IARAISTMEESSIEEER 609 Query: 649 RLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YVG+TRA +L + + N ++ + E + Sbjct: 610 RLCYVGITRAMRELYMTQAASRTLYGKTNVNLKSRFLKELPEETVKELDPPKASPSYAGA 669 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 D + ++ + + ++R + I + KI + L +EP Sbjct: 670 DYSLLQNYADKYKKTMNIDRAKQIGARIKSSKIQEPLDRVRDITKDEPE 718 >gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282147|gb|EDT47578.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 783 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 99/593 (16%), Positives = 185/593 (31%), Gaps = 123/593 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 179 QIVAKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNPD---VLAYYQQRYQYIHVDEYQD 235 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 236 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 283 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL + V + N + Sbjct: 284 ------EAKVVMLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 318 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI N++ Sbjct: 319 --LW-------TQNTDGEQIVYYRARDEREE-------AVFVASTIDNIVREQGK----- 357 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 358 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 409 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 410 IANTADNISYERIVNEPKRGVGPGTLEKIRDFANLQNMSLLDASANIMLSGVKGKAAQAV 469 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + L S + +L + E I+ + EFL T Sbjct: 470 WDLANLLMNLRTDLDKYSVTELVETVLDKTGYLDALRVQNTLESQARIENIKEFLTVTKN 529 Query: 539 N---------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T V +MT+H AKGLE P+VF Sbjct: 530 FDENQDDAPEDESGIDKLSRFLNDLALIADTDDGNAETAE--VTLMTLHAAKGLEFPIVF 587 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + EE R Sbjct: 588 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 613 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 L YVG+TRA L + + + K++ + + + + + Sbjct: 614 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPA 666 >gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R] gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R] Length = 763 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 115/727 (15%), Positives = 224/727 (30%), Gaps = 148/727 (20%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + P+ + + S+ + + L ++ Sbjct: 73 AAAEMRERVSQLVGPVAERMW--VATFHSVCVRILRQQAQ-LVEGLNTNFTIYDSDDSRR 129 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL+ + +K + + +LK +L Q+ N Y+ Sbjct: 130 LLTMIAKDLELDIKK-FSARTLLGAISNLKNELVTPQEALADAERTHNPYE--------- 179 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 T+ + Y+ ++ +DF+DLI T + ++ + + H+LIDE QD Sbjct: 180 TVVARAFSEYQSRLRRANAVDFDDLIGETVRIFREHP---PVAEYYRRRFRHVLIDEYQD 236 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+I +L P L VGD QSIY+F GA + + +R Sbjct: 237 TNHAQYELISTLVGKP------DQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFSN- 289 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL+ + V S EN + + Sbjct: 290 -------ARTILLEQNYRSTQTILSAANAVISQNENRRPKN------------------- 323 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + + AR IA I N++ Sbjct: 324 --LWTAL-------GEGEQIIGYVADNEHDE-------ARFIASEIDNLVDHG------- 360 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + DI ++ R + + + + + I+D++A R Sbjct: 361 ---MNYSDIAIMYRTNNSSRALEDVF----MRTGVPYKVVGGTKFYERKEIRDIIAYLRV 413 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK--------FANCGI 478 + + +D ++ ++ +P + I + + + + G Sbjct: 414 LENPDDTVNLRRIINTPKRGIGDRAQAFIALHSENNQISFGQALLDAGLGKIDLLGARGK 473 Query: 479 SKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527 + + L + IL + + + + +D Sbjct: 474 NAVIKFNELFDALRTELPTMVNEVTGLPDIGQVISRILDITGYKAELEASNDPQDGARLD 533 Query: 528 VLDEFLNFTLRNE--------------QNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 L+E ++ + SLQ + + + +++ V Sbjct: 534 NLNELVSVAREFSSDAANRMVNEVPEGEAQPGSLQAFLERVSLVADADQI-PDSDNGVVT 592 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE P+VFL F H Sbjct: 593 LMTLHTAKGLEFPIVFLTGWEDGQFPH--------------------------------- 619 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 L E RL YVG+TRA +L + + S+ + + Sbjct: 620 -LRSLGDAKELAEERRLAYVGITRARKRLYMTRAMLRSSWGNPVTNPPSRFLQEVPAELI 678 Query: 694 RVKKIKL 700 ++ + Sbjct: 679 DWRREEP 685 >gi|116627783|ref|YP_820402.1| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9] gi|116101060|gb|ABJ66206.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus LMD-9] Length = 770 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 113/678 (16%), Positives = 207/678 (30%), Gaps = 134/678 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L K + Q +I +DE QD Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL + V N + Sbjct: 271 ------EAKVVLLEENYRSTKKILQAANDVIKNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW +Q + D + A +A TI N++ Sbjct: 306 --LW-------TQNDEGEQIVYYRANDERDE-------AVFVASTIDNIVRE-------- 341 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +V KD VL R + I I I+D+++ Sbjct: 342 -KVKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481 I + D++SF ++ P + K+ + ++ + Sbjct: 397 IANTSDNISFERVVNEPKRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGKAAQGV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I L S D IL + E I+ ++EF++ T Sbjct: 457 YDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSRIENIEEFMSVTKN 516 Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 ++ + L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEAEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + R Sbjct: 575 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + K+ + + + + + + + + Sbjct: 601 LAYVGITRAEEILFLTNANTRTLFGKTGYNRPSRFLREISDDLLQYQGLARPANSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 E + L++ ++ + + P L S G + Sbjct: 661 FTKEEPIQFGQGMSLQQALQTRKANAQPQKHTGGAQPF---SKATGGLPFSKASDSGNSA 717 Query: 770 LESLLSDNQTFNRGLIIH 787 + G I H Sbjct: 718 TDW--------EIGDIAH 727 >gi|182625416|ref|ZP_02953189.1| recombination helicase AddA [Clostridium perfringens D str. JGS1721] gi|177909413|gb|EDT71865.1| recombination helicase AddA [Clostridium perfringens D str. JGS1721] Length = 1271 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 125/656 (19%), Positives = 229/656 (34%), Gaps = 55/656 (8%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F L S + T+ + +S + E L+ + E KM+ Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178 L + Y + K++ +LDF DL ++L +D + + + + Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFE 398 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P+ L Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296 + ++ I L +FRS +I+ V+ +F + L D + Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343 +S E + + + E + + S Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSNEDELGEEEEDLDSIQ 567 Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR I I+ ++ + GK R I+ KDI++L+R K+ Sbjct: 568 LEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ + Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684 Query: 457 CTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + Y + + K ++ + Y+++ A + +F + Sbjct: 685 RLLNKDKYFFEIIKEVVGGTYDESISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E S+ L I+ + Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + K + K + E R+LYV TRA ++LII + + N Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENW 920 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 20/175 (11%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144 Query: 829 TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + +S Y E+ +I ++ + + G ID Sbjct: 1145 QKFFKSDLGKRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + +YKT + E E+ + Q+++Y+ L + + + +Y Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEENFINKYKIQINLYKDTLNKIL-GEEVKEVYLY 1258 >gi|319404491|emb|CBI78098.1| DNA helicase II [Bartonella rochalimae ATCC BAA-1498] Length = 815 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 107/550 (19%), Positives = 182/550 (33%), Gaps = 109/550 (19%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L +Y++ K DF DL++++ + + I + + +IL+DE QDT Sbjct: 208 IGRKLYRNYQDRLKNLNACDFGDLLLHSISIFQNNPD---ILREYHNKFRYILVDEYQDT 264 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 ++ Q+ +R L + H L VGD+ QSIY + GA+ +LR ++ Sbjct: 265 NIAQYLWLRLLAQ-------HHEKQINLCCVGDDDQSIYGWRGAKVDNILRFEQDF---- 313 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + S +N G + S Sbjct: 314 ----SPAKIIRLERNYRSTSHILKTASHLISHNQNRLGKTLFSDQI-------------- 355 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + ++ + +DS + AR I I ++ Sbjct: 356 ------------NSDDEKVKIHAAWDSAEE-------ARAIGEEIEQAQRAGHSLNH--- 393 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 I +LVR L ++ + + I+D +A R + Sbjct: 394 -------IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDALAYLRVV 442 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481 + DDL+F ++ P + + R + ++ + + Sbjct: 443 VQPADDLAFERIINIPKRGLGNATLRHLYNSARARSIPLFVAAAEIITTDELKPKIRNAL 502 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + V++ + + Q + IL + E L+ EQ Sbjct: 503 RDVVENFYRWQSMLQHTPHTELAETILDDSGYTAMWQEDRSPEAPTRLENLKEMIRSMEQ 562 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L S LE + + N N V IMT+H+AKGLE VFL +F H+ Sbjct: 563 -----FENLRSFLEHVSLVMDSESNENMNAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 617 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 EE RL YVG+TRA Sbjct: 618 RSLDEGGHSG--------------------------------LEEERRLAYVGITRAKKH 645 Query: 662 LIICKHSNTS 671 L I SN Sbjct: 646 LHIWCVSNRR 655 >gi|292670883|ref|ZP_06604309.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC 43541] gi|292647504|gb|EFF65476.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC 43541] Length = 1256 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 135/1027 (13%), Positives = 295/1027 (28%), Gaps = 157/1027 (15%) Query: 28 VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK--NII 85 +D+ + +E + + L + S +F + NI Sbjct: 251 GNDLRTAAAKCLEALVHN-REIYEDLHAELNGFVNARQDSAWEAFLAQAAAAKKAKKNIP 309 Query: 86 TQEINKKSPDLKEKLKKSQD-----------EFIKIRDRFN--TYKMFKSTLASLTLAKY 132 + + P++ +LKK + + + L Sbjct: 310 RKAVEDCDPEVGAQLKKLTENIHAPWDGCIARLPATAQELYDTENAANAAIRQYVRLTIA 369 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----------VSAWIRYKIDQEINHILI 182 + +++ K + +LDF DL +LL + I ++ + I++ Sbjct: 370 FHNAFQQKKIERSILDFSDLEHTALELLCRDPKQLQEDPTVAAPTEIADELRAHYDAIMV 429 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ +Q ++R + + F VGD KQSIY F A+P Sbjct: 430 DEYQDTNGLQEGILRQIARE-----------NNRFIVGDVKQSIYRFRLADPSLFQHTYE 478 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + + ++ + +FRS A++L ++++FS + + + Sbjct: 479 AYRGD----SAEGELVTMSDNFRSRAEVLEPINEIFSQIMSKEAVDISYDVHAHLN---- 530 Query: 303 GQVGTVQLWEQVVSQHDS--QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 G V + + N +++ + + + I A IA I + Sbjct: 531 --PGLVFAEPTKGTSLAGPLEINLLHADYSADAEGEEERKAFEIEAHFIARRIQKLKSEG 588 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + NG +Q KDI++L+R K+ I I +D + I+ Sbjct: 589 YVLHNGH--AVQNKDIVILLRGAKERAGI---LLDALRKENIPAYADDTAGYFEASEIRM 643 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFANC 476 +++L + + D +L SP+ + +D+ + + ++ Sbjct: 644 MLSLLAVLDNARQDTPLTAVLVSPMIGMTMEDMAALRIHTPLGGIYDILIGATGGGLSDE 703 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535 +K + ++ I S + L+ G L ++ Sbjct: 704 LTAKAANALERIRYWRRCVLVQSVPELLRLLYRETGYYDYVGGLPGGILRQANLRMLIDR 763 Query: 536 TLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ + L + ++ ++ R + + VRIMT+H +KGLE P+VFL Sbjct: 764 AADFERTNERGLFRFLRYIDALKRRSTDLSVARTLGESEDVVRIMTIHRSKGLEFPIVFL 823 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIP--IWIPQSKSRNNIVSDLIKHLKKSTQE--- 645 + + + + K + +++ T Sbjct: 824 ANIAGAFNMQDAQGDLLCHAHEGIGLRVYENSMTGRQKYDTMSRRKVKAVIQRETMAEEV 883 Query: 646 ------------------------------EYNRLLYVGMTRASDQLI------------ 663 E R + T D + Sbjct: 884 RILYVAMTRAQEKLILTGTLNITRTGKDALEQLRETCLKYTPIQDAVFPKEAILGARSYL 943 Query: 664 --ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS---------INKDEWIAY 712 I + D+V N + +++ + ++ I Sbjct: 944 DWIALSLMRHPDGAVLFNDTDDIVCRMPSNPKAHFDVRIIDENIRASQKEAQENEDDILT 1003 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST----------I 762 P + + L + + K + E + + Sbjct: 1004 AVRVDEPLPVGKDADRVAAVLGWVYDLRGTVQIHAKTSVTELKRQQEAEEKSIAPFLPAV 1063 Query: 763 DTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKN 812 T LE + RG +H ++Q + Sbjct: 1064 GDSVDTPLEWEVPRFLRSSEREYLTPMERGTAMHTVMQQLDLSDIANIAAIEQQVNALVE 1123 Query: 813 AKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINC---------PKKD 861 + E + L I + + + + + Y E+ + Sbjct: 1124 KGILTEAERSIINLDHIWTFVSSNLGRRMHAAKAVYRELPFGRLLPAHAYYKGATDENDQ 1183 Query: 862 IIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 I + G ID + + + +YKT + + Q+ +Y ++ +K + Sbjct: 1184 IFLQGIIDVLFEEENGNYILVDYKTDRKI--SAATARARYQFQIDLYCDAVETIL-DKPV 1240 Query: 921 VCLLIYV 927 +++ Sbjct: 1241 KERYLFL 1247 >gi|295092248|emb|CBK78355.1| Superfamily I DNA and RNA helicases [Clostridium cf. saccharolyticum K10] Length = 830 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 113/713 (15%), Positives = 226/713 (31%), Gaps = 131/713 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + Sbjct: 28 GAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAAEMRERVDQIVGFGSESIWVST 87 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF-- 120 F L + + + + + +K+ K+ Q + + ++R ++ Sbjct: 88 FHSSCVRILRRHIDRLGYDTSFTIYDTDDQRTLMKQIFKRLQVDTKQFKERSVLGRISSL 147 Query: 121 --KSTLASLTLA-----------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + L L Y++A K N LDF+DL++ T +L + Sbjct: 148 KNEMIRPDEALTNAGGDFREKKIAELYGEYQKALKNNNALDFDDLLVKTVELF---EADQ 204 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I++DE QDT+++Q++++ L + R + VGD+ QSIY Sbjct: 205 EVLAYYQNRFRYIVVDEYQDTNMVQFKLVDLLAGKY----------RNICVVGDDDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA+ + +L ++ +I+L ++RST +IL ++V + Sbjct: 255 KFRGADIENILSFEKAFP--------GAQVIKLEQNYRSTQNILNAANEVIRNNRGRKDK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + G+ V+L + + + A Sbjct: 307 TLWTAN---------GEGERVRLAQFDTAYEE--------------------------AD 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 IA I S + R D VL R + L+ + I Sbjct: 332 YIACDIKA-------ESAKENRP--FSDFAVLYRTNAQSRLLEEKM----ILHSIPYRLV 378 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETV 466 IKD+++ + I + +DDL+ ++ P + + I + Sbjct: 379 GGVNFYQRKEIKDILSYLKTIANGQDDLAVQRIVNVPKRGIGATSMGRVIAFASAGGMSF 438 Query: 467 YEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 Y+ + + K + I + S + IL R++ + Sbjct: 439 YDALLRVKAVPSIGKAADKIGVFTEQIEDFKARLGELSLKELIEEILENTGYRKEIEAEG 498 Query: 522 GNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E ++E +N + + +L + E+ + N V +MT+ Sbjct: 499 EVEAETRLQNIEELINKAVAYWDNEENPTLDGFLEEVALVADVDSMD--ESENRVVLMTL 556 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P V+L +F Sbjct: 557 HSAKGLEFPHVYLSGMEDGLFPSSMSIMSDDGD--------------------------- 589 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA ++L + ++ V + Sbjct: 590 -----AVEEERRLCYVGITRARERLTLTAARQRMTNGETRFSRLSRFVEEIPP 637 >gi|42519596|ref|NP_965526.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533] gi|41583885|gb|AAS09492.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533] Length = 748 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 123/692 (17%), Positives = 212/692 (30%), Gaps = 135/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAASEMKERVQKLLGPAADSVWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L + +D Sbjct: 90 FHALCVRILRRDAKKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 149 Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K F ++ + + + Y+ K++ ++DF+DLI+ T L KK Sbjct: 150 KNDLLTPKDFKEQAASPFEKVTAQVYSEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 207 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + Q + + I+L ++RST IL + V + Sbjct: 257 WRGANMENILNFEHDYQDD------EVTTIKLEQNYRSTGHILDAANSVIKNNLKRKPKK 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 311 ---------------------LW-------TDKGAGDKINYYRAQSGNDE-------ALF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I I KD VL R + + I Sbjct: 336 IISKIKEEIKKHQR---------DYKDFAVLYRTNAQSRNVEEAL----VKANIPYRIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A + + + D +SF ++ P + K ++ + E Sbjct: 383 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + I ++ IL ++ + Sbjct: 443 ETFKNLSLAPITGRPARTLATFGTALKDAIEYSKTHGVTGLTEKILADFGYKEALENEHT 502 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + L+EFL T R E ++L + ISE+ N+V Sbjct: 503 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFISEISLLSDQD--DLENQDNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 S EE RL YVG+TRA +L I Sbjct: 589 --RAVEDPSELEEERRLAYVGITRAEKKLYIT 618 >gi|256852263|ref|ZP_05557649.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN] gi|260661705|ref|ZP_05862616.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN] gi|282934843|ref|ZP_06340076.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|297205570|ref|ZP_06922966.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16] gi|256615309|gb|EEU20500.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN] gi|260547452|gb|EEX23431.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN] gi|281301074|gb|EFA93385.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|297150148|gb|EFH30445.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16] Length = 754 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 121/724 (16%), Positives = 223/724 (30%), Gaps = 134/724 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEMKERVQKLLGPAGQDVWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKK------SPDLKEKL---------KKSQDEFIKI 110 F L L + I +++ L + Sbjct: 90 FHALCVRILRRDADKIGYSRNFSIADSSEQVTLIKHIEKDLNINPKQYNPRAILSAISNA 149 Query: 111 RDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ K F+S + + Y++ ++ ++DF+DLI+ T L +K + Sbjct: 150 KNDLLNPKDFESASGNRPFDQVVSEIYKEYQKRLVQDQIMDFDDLIMQTLVLFQKDKAT- 208 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + ++L+DE QDT+ Q+++ R L + + VGD QSIY Sbjct: 209 --LHYYQNKFRYLLVDEYQDTNEAQYQLCRLLAAQYS----------NVCVVGDGDQSIY 256 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA + +L ++ +++ ++L ++RST IL+ + V +N + Sbjct: 257 GWRGANMENILNFEKDYKEK------GVHTVKLEQNYRSTGHILSAANAVIKNNQNRKAK 310 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW D + + + D A Sbjct: 311 K---------------------LW------TDQGAGEKITYYRAQSD--------VDEAI 335 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I+ + KD +L R + I Sbjct: 336 FVISKITEAVKAGKR---------DYKDFAILYRTNAQSRGFEESL----VKSNIPYQIV 382 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETV 466 D IKD++A + + + D +SF ++ P + K + V Sbjct: 383 GGHKFYDRKEIKDILAYLKLVANTSDSMSFNRIVNMPKRGIGAATVEKLLTFANERRIGV 442 Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFIS 519 + + K + + + AQ + IL + Sbjct: 443 GDALSNLELVPVSAAASKKLADFNAKLVDCVSYAQDASHTVTGLTEKILEDFGYTEALKK 502 Query: 520 RFGNE---VIDVLDEFLNFTLR----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 E ++ LDEFL T R E SL E + + + N+V Sbjct: 503 EKTLESASRLENLDEFLTVTKRFDDNFEAEDDESLPINDFLSEVTLLSDQDDIEDDGNQV 562 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFLV +F Sbjct: 563 TLMTLHAAKGLEFPVVFLVGMEDGIFPLS------------------------------- 591 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 L++ EE RL YVG+TRA ++L + + + K+ V + D Sbjct: 592 ---RAMLEEDQLEEERRLAYVGITRAREKLYLTNAFSRTMYGKTTSNPASRFVQEIKPED 648 Query: 693 ERVK 696 + Sbjct: 649 LETE 652 >gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 771 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 104/658 (15%), Positives = 206/658 (31%), Gaps = 125/658 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 272 -------AKVVLLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A IA TI N++ + Sbjct: 306 --LW-------TQNADGEQIVYYRARDEREE-------AVFIASTIDNIVREEGK----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 397 IANTADNISYERIVNEPKRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGKAAQAV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L + + +L + E I+ ++EFL T Sbjct: 457 WDLANLLMKLRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQARIENIEEFLTVTKN 516 Query: 539 NE---------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + ++ L +++L T V +MT+H AKGLE P+VF Sbjct: 517 FDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAE--VTLMTLHAAKGLEFPIVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA L + + + K++ + + + + + + + Sbjct: 601 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPANSSFGVR 660 Query: 710 --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 + + + L++ ++ + + K+ P + S Sbjct: 661 YSNSSDEQLTFGQGMSLQQALQARKAKVQPTSSRGAQPFSKSGKAVPVGQSASASKEA 718 >gi|291532505|emb|CBL05618.1| recombination helicase AddA, Firmicutes type [Megamonas hypermegale ART12/1] Length = 1001 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 132/709 (18%), Positives = 258/709 (36%), Gaps = 57/709 (8%) Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 + ++ + ++LK+ + +++K + + + + +AK + ++ Sbjct: 294 ALRDETKKIIKQLKEHYFTQTIEDTLSDMPQLYKQANSLCNITIEFSQAFSKAKNERSLV 353 Query: 148 DFEDLIINTNDLLKKRD------VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 DF DL T LL + + + + I + ++ I++DE QDT+ +Q +++ + Sbjct: 354 DFSDLEHFTLKLLAEENSTAEKLIPSPIAQTLQEKYVEIMVDEYQDTNGVQEAILKLIAS 413 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 + LF VGD KQSIY F AEP+ L + + I+L Sbjct: 414 R---------TKPNLFFVGDVKQSIYKFRLAEPELFLAKYHQYP-----HEEDCLRIDLA 459 Query: 262 LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 +FRS +IL V+ +FS A LS + + L + Sbjct: 460 QNFRSRKEILDGVNFIFSQIMTTKAGELSYGKDEALYCGFDYPESE-FLTLKSPIELTLL 518 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDI 376 + + D+ A+ IA I ++ + + R I+ KDI Sbjct: 519 DKQQKLTLTENDDIDNEDTVQGFQAEAKYIAVRIKELMNKQPLVFDKHTKTYRPIKWKDI 578 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 ++L+R +D I + + I V ++ +++L + I + + D+ Sbjct: 579 VILLRSVQDKAKI---LADVLREDNIPVYATIETGYFQETEVRIMLSLLQIIDNPQQDIP 635 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHE----------------TETVYEYIQKFANCGISK 480 +L SP+FNF+ +D+ I + E + +K K Sbjct: 636 LTAILYSPIFNFTVEDLAHIRLINPQLNMYETLLFMTSINELQEQLLPVDKKVFAKLQIK 695 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539 + +H A+ S + L+L G+ L + Sbjct: 696 VNDFLTKLHYWRDYARSHSVPELIWLLLNDTGYYDYVGGLPEGSVRQANLRALYDRAFNY 755 Query: 540 EQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 EQ S+ L + + + + R S + + VRIM++H +KGLE PVV L D G Sbjct: 756 EQTSFRGLFRFLRFIHKMQHMGNDLAVARNLSDSEDVVRIMSIHKSKGLEFPVVILADIG 815 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 Q + + L + + +N +I+ + K + E R+LYV Sbjct: 816 KQFNLKDVQESVLFHKKLGLGLYVNDVKHHYRYQNLSRQAIIQQIVKEYKAEEMRILYVA 875 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 MTRA ++LI+ + + + + + + +W+A Sbjct: 876 MTRAREKLILTGTVRNMEK------FAQYACSQLQTTTKTLPDYFIMQAKSYLDWLAPAI 929 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 + HH T + ++ + ++ DI + I++ D Sbjct: 930 ARHHDGLTLRQSATNESAVLLDDPSQWQISLINSLDITDKTIISTVNED 978 >gi|168486496|ref|ZP_02711004.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1087-00] gi|183570538|gb|EDT91066.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1087-00] Length = 763 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKIILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|304385834|ref|ZP_07368178.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus acidilactici DSM 20284] gi|304328338|gb|EFL95560.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus acidilactici DSM 20284] Length = 1238 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 125/863 (14%), Positives = 276/863 (31%), Gaps = 103/863 (11%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSL------LSSFFLTQKFTPQKNIITQEINKK 92 ++ + L+ +L L + P+ E Sbjct: 246 LQKAAANFQTEVAGLKTVIDQFDQPNWDALQQAMVNFKFAQLPRGKKPEVQEFNLEAKPL 305 Query: 93 SPDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 + K + + + K+++ + L + + + + + + K LDF Sbjct: 306 RNEFKAEFNGLVERYFKLKNDQLIAIFKDARELMLKLIEVQQQFSDRFLQEKLTRRSLDF 365 Query: 150 EDLIINTNDLLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 DL +L+ + +R ++ N +++DE QD + +Q ++ ++ + Sbjct: 366 SDLEHFALQILQNQSEEGQAVRRNFQEKFNEVIVDEYQDINPLQETILTAVARE------ 419 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 P +F VGD KQSIY+F A+P + + R ++ +GQ I L +FRS Sbjct: 420 ---DPGNMFMVGDVKQSIYAFRMADPSLFISKSRRFKQ----SGQPDERIILAENFRSMQ 472 Query: 269 DILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 ++ + +F+ + ++ D+ ++ + + ++ Q Sbjct: 473 NVDDFTNLIFNQIMDQAVGEIAYDADAQLKFGAKYYPAEVQNDTEVLLFDDQQNENTADQ 532 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKR 383 E D + + IA I + T + R ++ DI +L Sbjct: 533 EPGAIITDKNDGQL------QMIAQRIKRLFADQTEVFDRDTQEMRPLKYSDIALLHSTG 586 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + I + Y I + ++ + +MAL + I + D+ +L+S Sbjct: 587 NNNLNIVDTFK----KYGIPIEVSNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRS 642 Query: 444 PLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGISKFQHVIKYIHELI 492 P+ E+++ + + +Y +F K + + Sbjct: 643 PIVGLDENELAFLRISKKNGHYFESVLYFQNEFKIDYQNEFQANLKRKIDQFLAQLQHFR 702 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551 ++Q C+ D I G + + L + E++S+ L + + Sbjct: 703 KLSQQCTLVDLLWEIYQETGYLDYVGGMPDGPQRQNNLHALYDRAQSYEESSFKGLFQFV 762 Query: 552 SELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 +E+ K + V++MT+H++KGLE P+VFL+D + + Sbjct: 763 RFVEKMREKNKDLAENPVVTDTEAVKLMTIHSSKGLEFPIVFLIDADHGFNNSDTKGRYV 822 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + + ++ + + + +I ++ E R+LYV +TRA +LII Sbjct: 823 LDRDAGMGITVKDFVHRLEVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIITGA 882 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 + D ER K + I + +PE + E Sbjct: 883 LKAATPTLEKWAQAADTGELLLPEAERGKAKNFLDWIGMAIMRVPSVTEDYPEVSSRNLE 942 Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG---L 784 + + + +L + + +G Sbjct: 943 SAAGVEVK--------------------------LKVVNRADLLAGQRSDTGIEQGPPPT 976 Query: 785 IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLENPMMTTAMS 842 L+ + + + I + A + + I R+ ++P Sbjct: 977 -----LEKVDVNSDINDADQIRAILNFKYHDIEATQTTAYQSVSEIKRVFDDPD------ 1025 Query: 843 CDSYSEVSVSGKINCPKKDIIIS 865 + + +D I Sbjct: 1026 -------KLEMDFSAVDRDQKIR 1041 Score = 121 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 43/425 (10%), Positives = 109/425 (25%), Gaps = 34/425 (8%) Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV---RIMTVHTAKGLESPVVFLVD 592 L + ++++ + LE ++ + ++ A + + Sbjct: 822 VLDRDAGMGITVKDFVHRLEVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIITG 881 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE--YNRL 650 P ++ ++ + E L Sbjct: 882 ALKAATPTLEKWAQAADTGELLLPEAERGKAKNFLDWIGMAIMRVPSVTEDYPEVSSRNL 941 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 +++ + + + + Sbjct: 942 ESAAGVEVKLKVVNRADLLAGQRSDTG-------IEQGPPPTLEKVDVNSDINDADQIRA 994 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS---TIDTKGK 767 + H E T +++ ++ P KL + ++ + P D Sbjct: 995 ILNFKYHDIEATQTTAYQSVSEIKRVFDDPDKLEMDF-SAVDRDQKIRPQKRFVTDQLMT 1053 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL- 826 S +S + G H +LQ + + + Sbjct: 1054 PRFMSEVSQPKPTEIGTATHLILQQLDLREPVTEAVIKDKIRELVMNRVLEEAVAKRIRI 1113 Query: 827 -SITRLLENPMMTTAMS--CDSYSEVSVSGKINCPK--------KDIIISGRIDQISISQ 875 SI E+ + ++ + E + S + +D++I G ID Sbjct: 1114 NSILDFFESELGQLMLAHPEQVHREEAFSLLLPAKGLFPNVVGNQDVLIHGIIDAYFELD 1173 Query: 876 QNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEP 930 + + +YKT +P + + + Q+++Y + L + K + L +S Sbjct: 1174 GRVILLDYKTDFVLPGSPQQGIQKVIDRYQGQVNLYAQALSNIL-GKPVNEKYLYLLSIG 1232 Query: 931 KVFII 935 K+ I Sbjct: 1233 KLVEI 1237 >gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1] gi|77171802|gb|EAO74993.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1] Length = 759 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 122/774 (15%), Positives = 242/774 (31%), Gaps = 139/774 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61 G ++ L ++ + + V+ N + ++A L A+Q Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87 Query: 62 ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107 E + + F Q+ ++ + I + + D + L + Sbjct: 88 HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D K + Y+E +++ +DF+DLI+ T L + Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL + V + +N + Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW +Q + + + A Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI N++ KD VL R + I I Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D++A + + D++SF ++ P + KI + ++ Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 436 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + I L + + +L + + Sbjct: 437 LDSSSNVMISPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496 Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571 E I+ ++EFL+ T + + L L L + + E Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ VF Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA L + + + K++ + + Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + + + + + E T + L++ ++ + ++ +L + Sbjct: 643 LIQHQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 696 >gi|169832763|ref|YP_001694512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Hungary19A-6] gi|168995265|gb|ACA35877.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Hungary19A-6] Length = 763 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 101/592 (17%), Positives = 190/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A + TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVVRTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032] gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032] gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032] Length = 763 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 116/727 (15%), Positives = 225/727 (30%), Gaps = 148/727 (20%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + P+ + + S+ + + L ++ Sbjct: 73 AAAEMRERVSQLVGPVAERMW--VATFHSVCVRILRQQAQ-LVEGLNTNFTIYDSDDSRR 129 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL+ + +K + + +LK +L Q+ N Y+ Sbjct: 130 LLTMIAKDLELDIKK-FSARTLLGAISNLKNELVTPQEALADAERTHNPYE--------- 179 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 T+ + Y+ ++ +DF+DLI T + ++ + + H+LIDE QD Sbjct: 180 TVVARAFSEYQSRLRRANAVDFDDLIGETVRIFREHP---PVAEYYRRRFRHVLIDEYQD 236 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+I +L P L VGD QSIY+F GA + + +R Sbjct: 237 TNHAQYELISTLVGKP------DQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFSN- 289 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL+ + V S EN + + Sbjct: 290 -------ARTILLEQNYRSTQTILSAANAVISQNENRRPKN------------------- 323 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + + AR IA I N++ Sbjct: 324 --LWTAL-------GEGEQIIGYVADNEHDE-------ARFIASEIDNLVDHG------- 360 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + DI ++ R + + + + + I+D++A R Sbjct: 361 ---MSYSDIAIMYRTNNSSRALEDVF----MRTGVPYKVVGGTKFYERKEIRDIIAYLRV 413 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--------NCGI 478 + + +D ++ ++ +P + I + + + + A G Sbjct: 414 LENPDDTVNLRRIINTPKRGIGDRAQAFIALHSENNQISFGQALLDAALGKVDLLGARGK 473 Query: 479 SKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527 + + L + IL + + + + +D Sbjct: 474 NAVIKFNELFDALRSELPTMVNEVTGLPDIGQVISRILDITGYKAELEASNDPQDGARLD 533 Query: 528 VLDEFLNFTLRNE--------------QNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 L+E ++ + SLQ + + + +++ V Sbjct: 534 NLNELVSVAREFSSDAANRMVNEVPEGEAQPGSLQAFLERVSLVADADQI-PDSDNGVVT 592 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE P+VFL F H Sbjct: 593 LMTLHTAKGLEFPIVFLTGWEDGQFPH--------------------------------- 619 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 L E RL YVG+TRA +L + + S+ + + Sbjct: 620 -LRSLGDAKELAEERRLAYVGITRARKRLYMTRAMLRSSWGNPVTNPPSRFLQEVPAELI 678 Query: 694 RVKKIKL 700 ++ + Sbjct: 679 DWRREEP 685 >gi|312278340|gb|ADQ62997.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus ND03] Length = 770 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 113/678 (16%), Positives = 207/678 (30%), Gaps = 134/678 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L K + Q +I +DE QD Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + Sbjct: 271 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW +Q + D + A +A TI N++ Sbjct: 306 --LW-------TQNDEGEQIVYYRANDERDE-------AVFVASTIDNIVRE-------- 341 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +V KD VL R + I I I+D+++ Sbjct: 342 -KVKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481 I + D++SF ++ P + K+ + ++ Sbjct: 397 IANTSDNISFERVVNEPKRGVGPGTLEKLRNFAYEQNMSLLYASANIMLSPIKGKAAQGV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I L S D IL + E I+ ++EF++ T Sbjct: 457 YDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSRIENIEEFMSVTKN 516 Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 ++ + L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEAEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + R Sbjct: 575 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + K+ + + + + + + + + Sbjct: 601 LAYVGITRAEEILFLTNANTRTLFGKTGYNRPSRFLREISDDLLQYQGLARPANSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 E + L++ ++ + + P L S G + Sbjct: 661 FTKEEPIQFGQGMSLQQALQTRKANAQPQKHTGGAQPF---SKATGGLPFSKASDSGNSA 717 Query: 770 LESLLSDNQTFNRGLIIH 787 + G I H Sbjct: 718 TDW--------EIGDIAH 727 >gi|167462209|ref|ZP_02327298.1| ATP-dependent deoxyribonuclease (subunit A) [Paenibacillus larvae subsp. larvae BRL-230010] Length = 1391 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 128/830 (15%), Positives = 268/830 (32%), Gaps = 89/830 (10%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQ 54 R G L+ + I D+ + + + + G P + L+ TL Sbjct: 283 RREGPDLSLWQQSILHDVLLELKGAKNLLQQAKLWTEAPGGPLPYLATLDSDLELINTLL 342 Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +A++ E + + + + + + +E+ + + ++K + + Sbjct: 343 EAAEN-SWEAAYRAFQTAVFGKLKPCRGDDLDKELQEAVKQARNEVKDAVFRIKEEIFTR 401 Query: 115 -------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--- 164 + + L Y+++K+ ++DF DL +L+ + Sbjct: 402 TQEEYKDELKRTAPVLHHLVRLVIDFAERYQQSKEDKGLVDFADLEHYCLAILRSEESTP 461 Query: 165 ---VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + + ++ +L+DE QDT+ +Q ++ ++++ P F VGD Sbjct: 462 ERMIPSSAALDYQEQFAEVLLDEYQDTNRVQESIVSLISKEA---------PGNRFMVGD 512 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 KQSIY F AEP L + + G ++L +FRS ++ V+ +F Sbjct: 513 VKQSIYRFRLAEPGLFLSKYKSYTTSGEGEG---KRVDLARNFRSRRQVVDAVNFLFRQI 569 Query: 282 --ENAQGLSEDSTTTIRHRSSRIGQVG--TVQLWEQVVSQHDSQCNPQQESWTSYFD--- 334 E+ ++ D + ++ +V++ S + + + Sbjct: 570 MQESVGEIAYDIRAELVTGANYPETGQDLSVEMMLVDRSAEEQDEFTAKGFGEDEAEPEM 629 Query: 335 ----------SLPQESSASILARRIAYTISNMIGTDT--------IFSNGKKRVIQAKDI 376 + +A + AR IA I ++GT+ G+ R +DI Sbjct: 630 ASEPAASLEFEAAELETAQLEARAIALKIRRLLGTEEGVRPFQVFDKRTGELRPATFRDI 689 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 ++L+R + + I + ++ +++L + I + D+ Sbjct: 690 VILLRATQQWAPV---LMEELKQQGIPAYADLNTGYFSATEVEIMLSLLKTIDNPAQDIP 746 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI---------------------QKFAN 475 F +L+SP+ + DD+ +I F Sbjct: 747 FAAVLRSPVVQLNADDLAQIRIAGPGLSFYDAAYLYANGQTAEGALSQAIQPAVSWSFKP 806 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLN 534 K + + A+ + D I G + L + Sbjct: 807 EVQQKLLLFLDRLESWRSEARQGALADLIWNIYRETGFYDYVGGMPGGLQRQANLRALYD 866 Query: 535 FTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + E S L + +E+ R+ + VRIM++H +KGLE PVVF Sbjct: 867 RARQYESTSLRGLFRFLRFVERMKETGGDLGTARSLGEQEDVVRIMSIHKSKGLEFPVVF 926 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 + I L P + + + + +K E R Sbjct: 927 VAGLAKIFNQRDTSGSFLIHKELGFGPKYLDPDLRVSYPTLPMLAIRRRMKLELLAEEMR 986 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 +LYV +TRA ++L + ++++ S+ + + S +DE + + I Sbjct: 987 VLYVALTRAREKLFLLGTVKSADKLLSSWSRYLGLGTWSLPDDEVARARSYLDWIGPSLI 1046 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + + + D + SP N L Sbjct: 1047 RHRDAEGWRKRIGLEGAKLSPSLAGDPSVWSFTILSPSLLSQNLAEELKA 1096 Score = 127 bits (319), Expect = 8e-27, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 19/208 (9%) Query: 747 IKNDINEPYILNPSTID-----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801 ++ + + ++P + + K RG ++H ++Q + Sbjct: 1183 MRPQVRKDRKMSPQAVPGTIQTSLKKRPRFMEEKKPTPAERGSVVHAVMQNMPLHETPTL 1242 Query: 802 KNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCP 858 + + + L A+ I + + + + D EV S + P Sbjct: 1243 SSVRQTLDKMLRLELLTTAQCETVPEEEILQFFQTSVGKRMVKADWVKREVPFSLGLPAP 1302 Query: 859 K-----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 + ++I G ID + ++ + + +YKT ++E + + QL +Y Sbjct: 1303 EVYPDIGYNGARDIVLIQGIIDCLFEDEEGLVMLDYKTDAVWQNDLEKLKDRYRLQLQLY 1362 Query: 908 EKILKDSYPNKSLVCLLIYVSEPKVFII 935 + +++ + L + + + Sbjct: 1363 ARAVEEIWKRAPRQKYLYFFDGAHIVEL 1390 >gi|306820669|ref|ZP_07454297.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551279|gb|EFM39242.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 729 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 102/545 (18%), Positives = 187/545 (34%), Gaps = 115/545 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y++ KKN +DF+DLI N L K+ + K + +I++DE QDT+ Sbjct: 173 AKVYSLYQQELKKNNAMDFDDLIYNCIRLFKEH---KDVLEKYQFKFKYIMVDEYQDTNY 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +I+ L+ + + VGD+ QSIY++ GA+ + +L ++ Sbjct: 230 SQYLLIKMLSAM----------HKNICVVGDDDQSIYTWRGADIRNILEFEKDFDNVLQ- 278 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I+L ++RST++I+ V + + Sbjct: 279 -------IKLEQNYRSTSNIINAAHSVIKKNNERKEKK---------------------I 310 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + ++ S + + +A I M+ Sbjct: 311 W-------TDANDGEKIKLYSAASERDESN-------YVAINIKKMVDNQ---------G 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 KD VL R + Y I D + IKD++A R I + Sbjct: 348 YDYKDFAVLYRANSLSRTYEEAF----MKYGIPYKIFGGLKFYDRMEIKDILAYFRIIDN 403 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-----CGISKFQHV 484 + DD+S ++ P + I KI + ++ + + + + + Sbjct: 404 KFDDISLKRIINVPKRSIGTKTIEKIEAYAKENNMSILDAMDEVDDIVSTTKTRESVKKF 463 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 I L +A + +L ++ ++ E ++ +DE + E Sbjct: 464 KLLISSLKTLANVLPVSELLDKVLENTNYKKLYLEENSVENQSRLENIDELKSVVKEFEL 523 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + +L + T N N V +MT+H++KGLE VFLV +F Sbjct: 524 NSEDKTLSAFLQNASLS--TDMDEKIQNDNYVSLMTIHSSKGLEFRAVFLVALEEDIFPS 581 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 L++S EE RL YV +TRA + Sbjct: 582 S----------------------------------RSILEESKLEEERRLCYVAITRAKE 607 Query: 661 QLIIC 665 +L + Sbjct: 608 KLFMT 612 >gi|282882802|ref|ZP_06291407.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B] gi|281297213|gb|EFA89704.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B] Length = 720 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 190/551 (34%), Gaps = 120/551 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ K+N LDF+DL+I T +LL++ +R + +I +DE QDT+ Sbjct: 167 AGKIYEFYQNKLKENNALDFDDLLIKTVELLREFPD---VREFYQNKFKYIFVDEYQDTN 223 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 IQ+++I+ L VGD QSIY + GA+ +L ++ Sbjct: 224 SIQYKLIKLFCG----------KAPNLTVVGDNDQSIYKWRGADISNILNFQKDFP---- 269 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 II+L ++RST +IL V + V S Sbjct: 270 ----GAKIIKLEQNYRSTQNILDVANSVIKNNPQELSKS--------------------- 304 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + ++ + + S +E + + I + + Sbjct: 305 LW-------TKRQGGEKVYYKEFSVSNEEEFA-------VTNKILGL----------NYK 340 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 +D+ +L R + + I+ D +KD+MA + I Sbjct: 341 GYSFEDMAILYRTNAQSRGFEESL----SREGINYKIVGGLRFYDRAEVKDIMAYLKVIN 396 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483 + D+++ + ++ P + + KI + +++E I+ N + Sbjct: 397 NPLDEIALLRIINKPKRGIGDSSVEKIRDYAINNNLSMFEVIKNIENYEDLNVRAKKNIK 456 Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 I+ LI + + L++ + + ++ E +DE ++ + Sbjct: 457 SFANLINLLIERKDLLNVGELAELVVDESQYVEDLKNQNTLEARTKISNIDELISNIMSY 516 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++ L L +++ V +MTVH AKGLE +VFLV +F Sbjct: 517 DKE-----TSLSDYLSNMSLLTDIDKTSDAKGVNLMTVHAAKGLEFKIVFLVGMEEGLFP 571 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 +I+ + EE RL YV +TRA Sbjct: 572 -----------------------------------IIRQDEDEDIEEERRLCYVAITRAE 596 Query: 660 DQLIICKHSNT 670 D L I Sbjct: 597 DLLFISSSKTR 607 >gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus gallolyticus UCN34] gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II) [Streptococcus gallolyticus UCN34] gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 771 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 104/658 (15%), Positives = 206/658 (31%), Gaps = 125/658 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 272 -------AKVVLLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A IA TI N++ + Sbjct: 306 --LW-------TQNADGEQIVYYRARDEREE-------AVFIASTIDNIVREEGK----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 397 IANTADNISYERIVNEPKRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGKAAQAV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L + + +L + E I+ ++EFL T Sbjct: 457 WDLANLLMKLRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQARIENIEEFLTVTKN 516 Query: 539 NE---------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + ++ L +++L T V +MT+H AKGLE P+VF Sbjct: 517 FDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAE--VTLMTLHAAKGLEFPIVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA L + + + K++ + + + + + + + Sbjct: 601 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPANSSFGVR 660 Query: 710 --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 + + + L++ ++ + + K+ P + S Sbjct: 661 YSNSSDEQLTFGQGMSLQQALQARKAKVQPTSSRGAQPFSKSGKAVPVGQSASASKEA 718 >gi|227893040|ref|ZP_04010845.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM 16047] gi|227865153|gb|EEJ72574.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM 16047] Length = 748 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 117/687 (17%), Positives = 221/687 (32%), Gaps = 126/687 (18%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 LT +K++ IN K D + L + + D ++ + + Sbjct: 120 LTLVKHIEKDL---NINPKMYDPRGVLAAISNGKNDLLD--PEAYTASASSPFEKMTAKI 174 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y+ +++ ++DF+DLI+ L KK + + + +IL+DE QDT+ Q+ Sbjct: 175 YQEYQRRLRRDQIMDFDDLIMQALVLFKKDPET---LHYYQNKFRYILVDEYQDTNEAQY 231 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ +L + + + VGD QSIY + GA + ++ + +K Sbjct: 232 QLCHALAAQY----------KNICVVGDADQSIYGWRGANMENIMNFEHDYKKD------ 275 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RST IL+ + V +N + + LW Sbjct: 276 GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKSKN---------------------LW-- 312 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 Q+ ++ + A I I + K + Sbjct: 313 -----TDCGEGQKVTYYQAQSGDNE-------AHYIISKIQEEV---------KDKKRSY 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 KD +L R + + I D IKD+MA + + + D Sbjct: 352 KDFAILYRTNAQSRTVEEAF----VKSNIPYQIVGGHKFYDRKEIKDIMAYLKLVANPAD 407 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCGISKFQHVIKY 487 +S ++ +P + K+ T E + K Sbjct: 408 TMSMNRIINTPKRGIGAATVDKLMTFADENHYNTLDAMEHVAESPINTRAAKKLSDFGAK 467 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN----- 539 + + I AQ IL + E ++ LDEFL+ T R Sbjct: 468 LRDAIVFAQNHGVTGLTEKILEDFDYTDALKAENTIESETRLENLDEFLSVTKRFDDHYE 527 Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E++ + L + ++E+ N+V +MT+H AKGLE PVVFL+ +F Sbjct: 528 PEEDDSNPLSDFLAEVSLLSDQDDLDED--DNQVALMTLHAAKGLEFPVVFLIGMEDGLF 585 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + + EE RL YVG+TRA Sbjct: 586 PLQ----------------------------------RSMMDDNELEEERRLAYVGITRA 611 Query: 659 SDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 +L + + + + + D + + E +K++ + + E ++ Sbjct: 612 KQELFLTNAYSRMMYGRTQSNPPSRFLDEIDPKDLHKEENEKLQSSFIKSSFESRPAPFA 671 Query: 716 THHPENTPLEREETIKQLMDEQKIPKK 742 + Sbjct: 672 RKEERARATVYTAKKASGAVGAEKKGW 698 >gi|299783521|gb|ADJ41519.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum CECT 5716] Length = 756 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 119/695 (17%), Positives = 217/695 (31%), Gaps = 140/695 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V + + ++ L + Sbjct: 30 GAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNKAAREMKERVAKLLGEAGNDVWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106 F L F + Q+ +I + I+ K + ++ L + Sbjct: 90 FHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEEQNIDTKKFEPRQLLSAISNA 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D K + + + Y++ ++N LDF+DLI+ T +L KK + Sbjct: 150 KNAMEDPATFSKNHQR--PFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKK---A 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++I +DE QDT+ Q+E++ L E + + VGD QSI Sbjct: 205 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYE----------NICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA +L + + L ++RST IL ++V + + Sbjct: 255 YGWRGANMNNILNFEHDYPN--------AHSVMLEQNYRSTQTILKAANEVIANNLERKD 306 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ S+ + + A Sbjct: 307 KN---------------------LW-------TENGAGEKISYYRAQNEHDE-------A 331 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I I K Q +D +L R + +I + Sbjct: 332 QFIVKKIQE---------ERAKHNYQYQDFAILYRTNAQSRVIEETF----LKSTVPYTM 378 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D + I+DL+A I++ D +SF ++ +P + ++ E+ Sbjct: 379 VGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGIGMTSVERLREFAQESNLP 438 Query: 467 YEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + +K + + I L A+ S D +L + Sbjct: 439 LLAAAQNVQNANAISARTRNKIEEFGQLITALQDEAKVLSITDLTDQVLERTGYLAELQK 498 Query: 520 RF---GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPP-TIKRAHSANHN 570 G + L+EF + T ++ LQ+L L + + Sbjct: 499 DKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDFLAGLALVSDQDDVDEAEP 558 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V +MT+H AKGLE PV+FL+ VF Sbjct: 559 AVTLMTLHAAKGLEFPVIFLIGMEEGVFPLS----------------------------- 589 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA +L I Sbjct: 590 -----RAMTDNKELEEERRLAYVGITRAKKKLYIT 619 >gi|227537987|ref|ZP_03968036.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33300] gi|227242063|gb|EEI92078.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33300] Length = 758 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 98/635 (15%), Positives = 201/635 (31%), Gaps = 118/635 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + + +DF+DL+ TN LL K + +K + ++++DE QDT+ Sbjct: 175 QIYMTYAQRCYRAGAMDFDDLLFKTNVLLNKHPD---VLHKYQHQFKYLMVDEYQDTNFS 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +++ L + VGD+ QSIY+F GA + +L ++ Sbjct: 232 QYLIVKRLAA----------VNENICVVGDDAQSIYAFRGANIQNILNFQKDYP------ 275 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + +L ++RST I+ + + + +N + S Sbjct: 276 --DVKVFKLEQNYRSTKMIVNAANSIIANNKNQLEKNVFS-------------------- 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 D++ + + ++ D+ + A I+A+ + + Sbjct: 314 -------DNEDGEKIKVNRAFSDNEEGKIVADIIAQ-----------------EKALKGL 349 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 KD +L R + + R I IKDL+A R + Sbjct: 350 NFKDFAILYRTNAQSRSMEEALR----KINIPYKIYGGTSFYQRKEIKDLIAYFRLTFNP 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE----YIQKFANCGISKFQHVIK 486 D+ + ++ P + I +I + +++ Sbjct: 406 NDEEALKRVINYPRRGIGDTTIERIMIAADQQQIRLWDVVANAQMFLDGRSAGSVSGFAT 465 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---E 540 + +A S D I + E + + E LN E Sbjct: 466 MVQSFQAMANNHSAFDTAMHIAQHSGVLKDLYEDKSVEGLSRYENIQELLNGIKEFSERE 525 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + ++ + N + V +MT+H++KGLE P+VF+V +F Sbjct: 526 DIEDRGLDVFMQDIALLTNDD-NDKNPNADTVSLMTIHSSKGLEFPIVFIVGLEENLFPS 584 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + +S EE RL YV +TRA Sbjct: 585 QLSLNS----------------------------------RSELEEERRLFYVAVTRAEK 610 Query: 661 QLIICKHSNTSNEKKSN---QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 +L + ++ N + D + + + + + +++ + + W Sbjct: 611 KLHLSYATSRYRWGSLNNCEPSRFLDELNPACLDLDFKPRGMPSSAGDGFQRERMTWQQK 670 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + + +K K +D + Sbjct: 671 DQDTFSKPKPKVVKTTSILPKAHTPTEGFAPSDTS 705 >gi|320546849|ref|ZP_08041154.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812] gi|320448513|gb|EFW89251.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812] Length = 770 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 99/593 (16%), Positives = 186/593 (31%), Gaps = 123/593 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 QIVAKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 272 -------AKVVMLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI N++ Sbjct: 306 --LW-------TQNADGEQIVYYRARDEREE-------AVFVASTIDNIVREQGK----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 397 IANTADNISYERIVNEPKRGVGPGTLEKIRTFANQQNMSLLDASANIMLSGVKGKAAQAV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + L S + +L + E I+ ++EFL T Sbjct: 457 WELSNLLMNLRDDLDKYSVTELVEAVLDKTGYLDALRVQNTLESQARIENIEEFLTVTKN 516 Query: 539 N---------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T V +MT+H AKGLE P+VF Sbjct: 517 FDENQDDAPEDESGIDKLSRFLNDLALIADTDDGDTETAE--VTLMTLHAAKGLEFPIVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 L YVG+TRA L + + + K++ + + + + + Sbjct: 601 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPA 653 >gi|167751208|ref|ZP_02423335.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702] gi|167655715|gb|EDR99844.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702] Length = 1235 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 152/978 (15%), Positives = 304/978 (31%), Gaps = 180/978 (18%) Query: 85 ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------------YKMFKSTLASLTLAK 131 +E + ++++K ++ I +++ K + A L Sbjct: 285 FPKERAPQDRSAEKQVKAHREAVKSIFEKYFIKTCDKITSFGSDMAKSLPAVTALKNLVL 344 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y K++ DF D +L + + + + I++DE QD++ + Sbjct: 345 CFDKAYSAEKQRRNCADFSDAERGVYRMLCENGEKV----RERADFSLIIVDEFQDSNKL 400 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E+ + LTE+ + L+ VGD KQSIY F GA+P + Sbjct: 401 QYEIFKMLTEN----------KQGLYFVGDIKQSIYGFRGAQPSVFSAICK--------- 441 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 F + L +FRS ++ ++ +F + D R L Sbjct: 442 SDDFDKLPLNENFRSNRCVIDGINTLFDRMMTEENGGVDYAENGR-------------LI 488 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + DS + + ++ ++++ A IA I MI + K R Sbjct: 489 CGLEKDSDSPISDEDKTEVCIVSEKDRKNAVVTEAAYIAARIKQMIAQGYKVGSDK-RPC 547 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +++R K+ I L + ++V N R +L D I+ +++L + I Sbjct: 548 TEDDFAIIMRSPKN--RIADYVNVLTAN-GLNVTYNQRAVLLDRPEIRLMLSLLKVINDP 604 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI--------------------------------CTQ 459 +D +L SPL+ F+ DD+ ++ + Sbjct: 605 YNDTELAKVLMSPLYCFTADDMARLRTGTFGFDISKIRAECADELEKYCLGTKEIVGMKR 664 Query: 460 RHETETVYEYIQKFANCGISKFQH-------------VIKYIHELIHIAQFCSPHDFFTL 506 + V + ++ + K + + + A SP + Sbjct: 665 KPLYSCVMQAVRGYDTSEYEKLHELTKDIKPDAKCAVFVNDLDSFRNAATASSPQELIRN 724 Query: 507 ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRA 564 I + + L+ +++ +L +LI LE Sbjct: 725 IYDRISADELLSVGDDPATRQANLELLVSYAREYSDYKDGGTLGDLIFNLENMSSLTAAQ 784 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + H V+IM+ H +KGL+ PVVF+ + S + + I Sbjct: 785 TAGGHG-VKIMSTHMSKGLQFPVVFVANCASSFNDDDYTGDVVISEEYAVASKSVDISTM 843 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------------SN 672 SK ++ + +KK + E RLLYV TRA ++LI + + Sbjct: 844 SKIQSPAYHAAAQEVKKQLESEEMRLLYVAATRAENKLIFTANISKACDEYMSVLDVNRA 903 Query: 673 EKKSNQRTWYDMVYDSFH-----------------NDERVKKIKLTNSINKDEW------ 709 KK + + + + V+ I + DE Sbjct: 904 GKKVGKCSGSSYLSWLIEVLSAECDKVNDMQSGIIDYGDVRYIFYPLAYEGDEHSLTIPA 963 Query: 710 --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + + ++ + + ++ KKL + + + + Sbjct: 964 LNTGAENADEYTDDKNNDSTDIAVDEQFRSELEKKLNAAYAYEPLTKISAKFTATELAAN 1023 Query: 768 TNLESLLS------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809 ++ RG HKL++ I Sbjct: 1024 LREKNGEENYGLFIGKPSFLTENNTGKLSGKRRGDAYHKLMEHIPFEKILSEDEISDYIK 1083 Query: 810 TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC----DSYSEVSVSGKIN-------- 856 A E ++ +I N + + Y E + +++ Sbjct: 1084 NSTAGFLDKAEQNSIDAGNIAGFYGNDVAKRIVQASKNGKLYREYPIFHRLDTQCYDPAI 1143 Query: 857 --------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 + + G D I I + +YKT + + + QL IY+ Sbjct: 1144 FGADSREMLEGAEPYVQGIADMFFIEDDGIVLVDYKTDKT--DDEQKYKDDYKLQLDIYK 1201 Query: 909 KILKDSYPNKSLVCLLIY 926 + L+ + + ++IY Sbjct: 1202 EALEKEFSV-PVKQMIIY 1218 >gi|56707295|ref|YP_169191.1| DNA helicase II [Francisella tularensis subsp. tularensis SCHU S4] gi|110669765|ref|YP_666322.1| DNA helicase II [Francisella tularensis subsp. tularensis FSC198] gi|224456360|ref|ZP_03664833.1| DNA helicase II [Francisella tularensis subsp. tularensis MA00-2987] gi|254369977|ref|ZP_04985985.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874133|ref|ZP_05246843.1| DNA helicase II [Francisella tularensis subsp. tularensis MA00-2987] gi|56603787|emb|CAG44754.1| DNA helicase II [Francisella tularensis subsp. tularensis SCHU S4] gi|110320098|emb|CAL08137.1| DNA helicase II [Francisella tularensis subsp. tularensis FSC198] gi|151568223|gb|EDN33877.1| hypothetical protein FTBG_01576 [Francisella tularensis subsp. tularensis FSC033] gi|254840132|gb|EET18568.1| DNA helicase II [Francisella tularensis subsp. tularensis MA00-2987] gi|282158414|gb|ADA77805.1| DNA helicase II [Francisella tularensis subsp. tularensis NE061598] Length = 740 Score = 301 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 127/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89 I ++ + + S F ++ L + Q ++ + I Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 N D K+ K FI + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL+++ +L +R + +ILIDE QDT+ +Q+ ++ L D Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 + AVGD+ QSIY + GA + + + II+L ++RST + Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 IL V + V +N +LW + + ++ Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVL 317 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + A+ I I + + DI +L R + ++ Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416 Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + I + + + ++ S I+ I + S Sbjct: 417 NKTLETIRNYAQINSLSYWQANLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDK 476 Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MT+H +KGLE VFLV VF I Sbjct: 537 AVLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNF------- 587 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + + E RL YV +TRA L I S Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRSIF 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ T + K + A Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFTAAKPKTKQKA 670 >gi|313896290|ref|ZP_07829843.1| putative ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 137 str. F0430] gi|312975089|gb|EFR40551.1| putative ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 137 str. F0430] Length = 1012 Score = 301 bits (769), Expect = 6e-79, Method: Composition-based stats. Identities = 143/1019 (14%), Positives = 300/1019 (29%), Gaps = 156/1019 (15%) Query: 48 KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107 A ++ + Q +S+ T + I ++++ +P++ + + Sbjct: 10 ALAGEVEVFAHAQDTAAWTHFVSAA--TAAKKARGAIPRKDLDAYAPEIAAEFNRLTRTV 67 Query: 108 IKIRDRF-------------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 ++ + L +A + K +L F DL Sbjct: 68 FAAWEKLLKRLPKTAEDLCAAENRANADIRRFAQLTIDFHAAMQREKIARGILYFSDLEH 127 Query: 155 NTNDLLKKRDV----------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 LL I ++ + I++DE QDT+ +Q ++R + Sbjct: 128 EALHLLCAHPEKLQADPTMVDPTDIAVELQGHFDAIMVDEYQDTNGLQEGILRQIA---- 183 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 F VGD KQSIY F A+P + R + A + +++ + +F Sbjct: 184 -------RGDNRFIVGDVKQSIYRFRLADPVLFQQTYRAYRSGA----AEGTLVTMSENF 232 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR--IGQVGTVQLWEQVVSQ----H 318 RS A++L ++ +FS + R R G L + Sbjct: 233 RSRAEVLEPINYIFSQIMTETAVDIAYDEKARLNPGRKFDELPGGKSLAAPMEVNLLRVD 292 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDIL 377 + ++E +S + + AR IA I +I I +G + DI+ Sbjct: 293 YTDRADEEEKEEGEEESGEELGKFEVEARFIARRIVELISEKYIVHDGGGGHPLTYSDIV 352 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L+R K + D I ++ + I+ ++AL + + D + Sbjct: 353 ILLRAAKGRA---EILIEALRDAGIPAYADEPGGYFESGEIRMMLALLAALDNARQDTAL 409 Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETV----YEYIQKFANCGISKFQHVIKYIHELIH 493 +L SP+ +++ ++ + + +++ +H ++ I Sbjct: 410 AAVLASPMIGLRMEELAELRAHTPRGSIYDMLTADGGDELPAELMTRARHALERIRAWRR 469 Query: 494 IAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 A S + ++ G L ++ E+ + L + Sbjct: 470 YALVHSVPELLWMLYRDTGYYDYVGTLPGGVLRQANLRMLIDRASEFERTNERGLFRFLR 529 Query: 553 ELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 ++ + R + N VRIMT+H +KGLE PVVFL + G + Sbjct: 530 YIDALRSRSTDLSAARTLGESENVVRIMTIHKSKGLEFPVVFLSNIGGSFNEKDTGGDLL 589 Query: 608 IMPSLNDDPGIPIW--IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + + + + + + T+ E R+LYV MTRA ++LI+ Sbjct: 590 YHAREGIGLRLFENTEAGRQRYDTLSLRRVKDVIARETKAEEMRILYVAMTRAQEKLILT 649 Query: 666 KHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 N + K ++ + + + + + +W A H Sbjct: 650 GTLNVTRSGKDKLEQLREKCLTYAQETGAVLPDAAILGGKSYLDWTALALMRHPDGAPLF 709 Query: 725 EREETIKQ-----LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 E + I + +P + L + Sbjct: 710 EADTEITPYLPVSPAARFDVRLFDEDARAARRRAADEDDPILAAVRADDPLPEGGRAEEV 769 Query: 780 FN--------RGL-IIH----------KLLQVIFTLPE-------HKRKNFITSY----- 808 RG IH + ++I +P ++ Sbjct: 770 ARILDWHYDARGTEHIHAKTSVTELKCRRAELIEEMPPPFAPAFGDTSAEMAEAWETPRF 829 Query: 809 --------------------CTKNAKLWPAKEYKNLLLSITRLL----------ENPMMT 838 + L A + ++ LL E+ + Sbjct: 830 LRSDARAYLTPMERGIAMHTFMQQLDLTDAADIDAIVRQANTLLEKGILTEAERESIRIE 889 Query: 839 TAM-------------SCDSYSEVSVSGKINC---------PKKDIIISGRIDQIS-ISQ 875 + Y E+ + + I + G ID + Sbjct: 890 HVWKFAASRLGRRMRAAKAVYRELPFGRLLPAQKYYAEAQDAEDKIFLQGIIDVLFEEDD 949 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVF 933 + +YKT + + Q+ +Y + ++ + + L + + Sbjct: 950 GGYVLLDYKTDRKI--SAAAARARYQFQIDLYGEAVETIL-GRPVKERWLFLLDTGQEV 1005 >gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] gi|55737004|gb|AAV60646.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] Length = 775 Score = 301 bits (769), Expect = 6e-79, Method: Composition-based stats. Identities = 111/678 (16%), Positives = 210/678 (30%), Gaps = 135/678 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L K + Q +I +DE QD Sbjct: 172 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + Sbjct: 277 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 311 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW +Q + D + A +A TI N++ Sbjct: 312 --LW-------TQNDEGEQIVYYRANDERDE-------AVFVASTIDNIVRE-------- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +V KD +L R + I I I+D+++ Sbjct: 348 -KVKNFKDFAILYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 402 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481 I + D++SF ++ P + K+ + ++ + Sbjct: 403 IANTSDNISFERVVNEPKRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGKAAQGV 462 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I L S D IL + E I+ ++EF++ T Sbjct: 463 YDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSRIENIEEFMSVTKN 522 Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 ++ + L +++L T A V +MT+H AKGLE PVVF Sbjct: 523 FDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEVEAAE--VTLMTLHAAKGLEFPVVF 580 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + R Sbjct: 581 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 606 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + K++ + + + + + + + + Sbjct: 607 LAYVGITRAEEILFLTNANTRTLFGKTSYNRPSRFLREISDDLLQYQGLARPANSSFGVR 666 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 E + L++ ++ + + + + L S G + Sbjct: 667 FTKEEPIQFGQGMSLQQALQTRKANAQP----QKHTGAQPFSKATGGLPFSKASDSGNSA 722 Query: 770 LESLLSDNQTFNRGLIIH 787 + G I H Sbjct: 723 TDW--------KIGDIAH 732 >gi|16330097|ref|NP_440825.1| DNA helicase II [Synechocystis sp. PCC 6803] gi|1652584|dbj|BAA17505.1| DNA helicase II [Synechocystis sp. PCC 6803] Length = 793 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 120/682 (17%), Positives = 219/682 (32%), Gaps = 117/682 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEE 139 K I+T++++ K + + ++ + + + S + + Y+ Sbjct: 162 KTIVTKDMDLDEKQFNP--KSIRYQVSNAKNLGQSPETYLRENPSYKGRVIAEVYQAYQN 219 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 N LDF+DLI+ L ++ + + ++ NHIL+DE QDT+ IQ+++IR L Sbjct: 220 QLAANNALDFDDLILIPTRLFQQNES---VLGYWHRKFNHILVDEYQDTNRIQYDLIRLL 276 Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + + ++ R+ F VGD QSIYSF A+ +L + R + G+ +++ Sbjct: 277 STNGEERQSEWDWRGRSTFVVGDADQSIYSFRMADFTILLNFQEDFGDRLLD-GETTTMV 335 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL + + +T Sbjct: 336 KLEENYRSRENILQAANHLIEHNSQRIDKILKATR------------------------- 370 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 D + R + I ++ + D + Sbjct: 371 ---SGGDDIILYQADDERDES-------RFVINKILSLR--------KNNPELNFGDFAI 412 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + + I F D IKD +A R +++ D +S + Sbjct: 413 LYRTNAQSRAFEEQL----LNNNIRYNIVGGFRFYDRQEIKDAIAYLRVLVNPADTVSLL 468 Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHEL 491 ++ +P + I E ++E I A K + + E+ Sbjct: 469 RIINTPRRGIGKSTIEGFVNASKELDIPLWEIITDETSVNTLAGRSGKKTLQFARMLQEI 528 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNSYSSL 547 S + +L+L + E L E N + E ++ SL Sbjct: 529 QSQIGELSASEALSLVLEKSNYVDDLKQKGTEEADNRLANLGELDNAVRQFEAESEDPSL 588 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + ++ + +EV +MT+H+AKGLE PVVFLV H Sbjct: 589 VDFLASASLTSDLD--DLEESGDEVSLMTLHSAKGLEFPVVFLVGLEQGTCPHARSLNDP 646 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA + L + Sbjct: 647 L----------------------------------DLEEERRLCYVGITRAQENLFLTHA 672 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 + +L + D + P P + Sbjct: 673 R------------MRYIWGSLETKIPSQFLQELPPDLLADGSTGRRTGRNAPAADP--KG 718 Query: 728 ETIKQLMDEQKIPKKLFSPIKN 749 +I Q +K + P K+ Sbjct: 719 PSIAQKQARKKTGSQSTQPAKD 740 >gi|300772620|ref|ZP_07082490.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33861] gi|300760923|gb|EFK57749.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33861] Length = 758 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 98/635 (15%), Positives = 201/635 (31%), Gaps = 118/635 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + + +DF+DL+ TN LL K + +K + ++++DE QDT+ Sbjct: 175 QIYMTYAQRCYRAGAMDFDDLLFKTNVLLNKHPD---VLHKYQHQFKYLMVDEYQDTNFS 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +++ L + VGD+ QSIY+F GA + +L ++ Sbjct: 232 QYLIVKRLAA----------VNENICVVGDDAQSIYAFRGANIQNILNFQKDYP------ 275 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + +L ++RST I+ + + + +N + S Sbjct: 276 --DVKVFKLEQNYRSTKMIVNAANSIIANNKNQLEKNVFS-------------------- 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 D++ + + ++ D+ + A I+A+ + + Sbjct: 314 -------DNEDGEKIKVNRAFSDNEEGKIVADIIAQ-----------------EKALKGL 349 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 KD +L R + + R I IKDL+A R + Sbjct: 350 NFKDFAILYRTNAQSRSMEEALR----KINIPYKIYGGTSFYQRKEIKDLIAYFRLTFNP 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE----YIQKFANCGISKFQHVIK 486 D+ + ++ P + I +I + +++ Sbjct: 406 NDEEALKRVINYPRRGIGDTTIERIMIAADQQQIRLWDVVANAQMFLDGRSAGSVSGFAT 465 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---E 540 + +A S D I + E + + E LN E Sbjct: 466 MVQSFQAMANNHSAFDTAMHIAQHSGVLKDLYEDKSVEGLSRYENIQELLNGIKEFSERE 525 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + ++ + N + V +MT+H++KGLE P+VF+V +F Sbjct: 526 DIEDRGLDVFMQDIALLTNDD-NDKNPNADTVSLMTIHSSKGLEFPIVFIVGLEENLFPS 584 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + +S EE RL YV +TRA Sbjct: 585 QLSLNS----------------------------------RSELEEERRLFYVAVTRAEK 610 Query: 661 QLIICKHSNTSNEKKSN---QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 +L + ++ N + D + + + + + +++ + + W Sbjct: 611 KLHLSYATSRYRWGSLNNCEPSRFLDELNPACLDLDFKPRGMPSSAGDGFQRERMTWQQK 670 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + + +K K +D + Sbjct: 671 DQDAFSKPKPKVVKTTSILPKAHTPTEGFAPSDTS 705 >gi|225027982|ref|ZP_03717174.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353] gi|224954696|gb|EEG35905.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353] Length = 738 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 123/747 (16%), Positives = 241/747 (32%), Gaps = 131/747 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 27 GAGSGKTRSLTHRIAYLIEEKGVAPWNILAITFTNKAAQEMRERVDALVGYGSEDIWIST 86 Query: 66 FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKI 110 F F + QK+++ + + + D K+ L++ E Sbjct: 87 FHATCSRILRRHIDLLGYDRNFTIYDASDQKSLMKEVLKEMKIDTKQFLERSVMSEISSA 146 Query: 111 RDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ + + +++ S + HY++ K+N LDF+DL++ DL + Sbjct: 147 KNEYKSPLDYRNEYGSNFRNQRIADIYEHYQKRLKENNALDFDDLLVKMVDLFQTNPD-- 204 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I++DE QDT+ +Q+ ++ L + + R L VGD+ QSIY Sbjct: 205 -VLEHYQDRFQYIMVDEYQDTNTVQFLLVSLLAKKY----------RNLCVVGDDDQSIY 253 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA +L +++ +I L ++RST +IL + V + + + Sbjct: 254 KFRGANIYNILNFEKVFP--------DAQVIRLEQNYRSTQNILNAANGVIANNKGRKEK 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW + + Y + A Sbjct: 306 K---------------------LW-------TENQKGELVHFKQYDTEYDE-------AD 330 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I+ + R +Q KD+ +L R + + + I Sbjct: 331 GVVSRINFL----------AMRGVQYKDMAILYRTNAQSRIFEEKLK----QKNIPYAIV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 D IKDLM+ + + S DDLS ++ P + I ++ + + Sbjct: 377 RGISFYDRKEIKDLMSYLKVVDSGMDDLSVKRIINVPKRGIGQTTINRLQEFAILNQMSF 436 Query: 468 EYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 A+ K I E A + IL + R + + Sbjct: 437 LDAVFNADEIPEVTRALAKLHKFADMIEEFREYASEHEISELLEHILDVTQYRAELEAEG 496 Query: 522 GNE---VIDVLDEFLN-FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMT 576 +E ++ ++E N E+ +L++ ++E + Y + + N V +MT Sbjct: 497 TDESISRLEDIEELFNDIAYYEEEEENPNLRDFLAEKDMYTLNAGIDNLEDENNKVLLMT 556 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H AKGLE VFL VF + Sbjct: 557 LHNAKGLEFNNVFLGGMEEGVFPGF--------------------------------GAM 584 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 +S EE RL YVG+TRA ++L + ++ + + + Sbjct: 585 MSGDESEIEEERRLCYVGITRAKERLFLSAAKRRMLRGQTQYNRRSRFIDEIPGQYLDTE 644 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTP 723 + + K+ ++ P Sbjct: 645 QRVSEQRVVKNTERPAKYQYGAKAGKP 671 >gi|168206214|ref|ZP_02632219.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str. JGS1987] gi|170662326|gb|EDT15009.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str. JGS1987] Length = 1271 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 125/656 (19%), Positives = 226/656 (34%), Gaps = 55/656 (8%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F L S + T+ + +S + E L+ + E KM+ Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178 L + Y + K++ +LDF DL ++L +D + + + Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDRFE 398 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P+ L Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296 + ++ I L +FRS +I+ V+ +F + L D + Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343 +S E + + + E + S Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDDDELGEEEEDLDSIQ 567 Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR I I ++ + GK R I+ KDI++L+R K+ Sbjct: 568 LEARIIGKKIKELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ + Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684 Query: 457 CTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + Y + + K ++ + Y+++ A + +F + Sbjct: 685 RLLNRDKYFFEIIKEVVDGIYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E S+ L I+ + Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + K + K + E R+LYV TRA ++LII + + N Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENW 920 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144 Query: 829 TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + +S Y E+ +I ++ + + G ID Sbjct: 1145 QKFFKSELGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + +YKT + +E E+ + Q+++Y+ L + L K Sbjct: 1205 FEEEDGYVLLDYKTDYVKEREEENFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1264 Query: 932 VFIIPQN 938 I + Sbjct: 1265 ELKISKE 1271 >gi|55822939|ref|YP_141380.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] gi|55738924|gb|AAV62565.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] Length = 775 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 112/678 (16%), Positives = 210/678 (30%), Gaps = 135/678 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L K + Q +I +DE QD Sbjct: 172 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + Sbjct: 277 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 311 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW +Q + D + A +A TI N++ Sbjct: 312 --LW-------TQNDEGEQIVYYRANDERDE-------AVFVASTIDNIVRE-------- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +V KD VL R + I I I+D+++ Sbjct: 348 -KVKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 402 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481 I + D++SF ++ P + K+ + ++ + Sbjct: 403 IANTSDNISFERVVNEPKRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGKAAQGV 462 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I L S D IL + E I+ ++EF++ T Sbjct: 463 YDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSRIENIEEFMSVTKN 522 Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 ++ + L +++L T A V +MT+H AKGLE PVVF Sbjct: 523 FDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEVEAAE--VTLMTLHAAKGLEFPVVF 580 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + R Sbjct: 581 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 606 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + K++ + + + + + + + + Sbjct: 607 LAYVGITRAEEILFLTNANTRTLFGKTSYNRPSRFLREISDDLLQYQGLARPANSSFGVR 666 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 E + L++ ++ + + + + L S G + Sbjct: 667 FTKEEPIQFGQGMSLQQALQTRKANAQP----QKHTGAQPFSKATGGLPFSKASDSGNSA 722 Query: 770 LESLLSDNQTFNRGLIIH 787 + G I H Sbjct: 723 TDW--------KIGDIAH 732 >gi|227515526|ref|ZP_03945575.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC 14931] gi|227086139|gb|EEI21451.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC 14931] Length = 760 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 119/695 (17%), Positives = 217/695 (31%), Gaps = 140/695 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V + + ++ L + Sbjct: 34 GAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNKAAREMKERVAKLLGEAGNDVWVST 93 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106 F L F + Q+ +I + I+ K + ++ L + Sbjct: 94 FHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEEQNIDTKKFEPRQLLSAISNA 153 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D K + + + Y++ ++N LDF+DLI+ T +L KK + Sbjct: 154 KNAMEDPATFAKNHQR--PFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKK---A 208 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++I +DE QDT+ Q+E++ L E + + VGD QSI Sbjct: 209 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYE----------NICVVGDADQSI 258 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA +L + + L ++RST IL ++V + + Sbjct: 259 YGWRGANMNNILNFEHDYPN--------AHSVMLEQNYRSTQTILKAANEVIANNLERKD 310 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ S+ + + A Sbjct: 311 KN---------------------LW-------TENGAGEKISYYRAQNEHDE-------A 335 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I I K Q +D +L R + +I + Sbjct: 336 QFIVKKIQE---------ERAKHNYQYQDFAILYRTNAQSRVIEETF----LKSTVPYTM 382 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D + I+DL+A I++ D +SF ++ +P + ++ E+ Sbjct: 383 VGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGIGMTSVERLREFAQESNLP 442 Query: 467 YEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + +K + + I L A+ S D +L + Sbjct: 443 LLAAAQNVQNANAISARTRNKIEEFGQLIAALQDEAKVLSITDLTDQVLERTGYLAELQK 502 Query: 520 RF---GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPP-TIKRAHSANHN 570 G + L+EF + T ++ LQ+L L + + Sbjct: 503 DKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDFLAGLALVSDQDDVDEAEP 562 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V +MT+H AKGLE PV+FL+ VF Sbjct: 563 AVTLMTLHAAKGLEFPVIFLIGMEEGVFPLS----------------------------- 593 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA +L I Sbjct: 594 -----RAMTDNKELEEERRLAYVGITRAKKKLYIT 623 >gi|268319977|ref|YP_003293633.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785] gi|262398352|emb|CAX67366.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785] Length = 748 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 122/692 (17%), Positives = 212/692 (30%), Gaps = 135/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L + +D Sbjct: 90 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 149 Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K F ++ + + + Y+ K++ ++DF+DLI+ T L KK Sbjct: 150 KNDLLTPKDFKDQAVSPFEKVTAQVYSEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 207 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + Q + + I+L ++RST IL + V + Sbjct: 257 WRGANMENILNFEHDYQDD------EVTTIKLEQNYRSTGHILDAANSVIKNNLKRKPKK 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 311 ---------------------LW-------TDKGAGDKINYYRAQSGNDE-------ALF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I I KD VL R + + I Sbjct: 336 IISKIKEEIKEHQR---------DYKDFAVLYRTNAQSRNVEEAL----VKANIPYRIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A + + + D +SF ++ P + K ++ + E Sbjct: 383 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + I ++ IL ++ + Sbjct: 443 ETFKNLSLAPITGRPARTLATFGTALKDAIEYSKTHGVTGLTEKILADFGYKEALENEHT 502 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + L+EFL T R E ++L + +SE+ N+V Sbjct: 503 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 S EE RL YVG+TRA +L I Sbjct: 589 --RAAEDPSELEEERRLAYVGITRAEKKLYIT 618 >gi|18309003|ref|NP_560937.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens str. 13] gi|81768348|sp|Q8XPE2|ADDA_CLOPE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|18143678|dbj|BAB79727.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens str. 13] Length = 1268 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 124/652 (19%), Positives = 226/652 (34%), Gaps = 55/652 (8%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F L S + T+ + +S + E L+ + E KM+ Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178 L + Y + K++ +LDF DL ++L +D + + + Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDRFE 398 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P+ L Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDIENPNVFMVGDVKQSIYKFRQANPELFL 451 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296 + ++ I L +FRS +I+ V+ +F + L D + Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343 +S E + + + E + S Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDEDELGEEEEDLDSIQ 567 Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR I I+ ++ + GK R I+ KDI++L+R K+ Sbjct: 568 LEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ + Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684 Query: 457 CTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + Y + + K ++ + Y+++ A + +F + Sbjct: 685 RLLNKDKYFFEIIKEVVDGIYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E S+ L I+ + Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDIK 864 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + K + K + E R+LYV TRA ++LII + + Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 19/174 (10%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144 Query: 829 TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + +S Y E+ +I ++ + + G ID Sbjct: 1145 QKFFKSDLGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 + + +YKT + E E+ + Q+++Y+ L + L Sbjct: 1205 FKEEDGYVLLDYKTDYVKEGEEENFINKYKIQINLYKDTLNKILGEEVKEAYLY 1258 >gi|332184707|gb|AEE26961.1| ATP-dependent DNA helicase UvrD/PcrA [Francisella cf. novicida 3523] Length = 740 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 108/597 (18%), Positives = 198/597 (33%), Gaps = 110/597 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 ++ YEE + + LDF DL+++ +L ++ +R + +ILIDE QDT+ Sbjct: 168 AHIYTAYEERLQLDNALDFADLLLHLYELFS---LNQQLREYYQNKFKYILIDEFQDTNY 224 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ ++ L D + AVGD+ QSIY + GA + + + Sbjct: 225 VQYMWLKLLVTD----------NNYMMAVGDDDQSIYGWRGAIVDNIHNYVKDLKN---- 270 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 II+L ++RST +IL V + V +N +L Sbjct: 271 ----VEIIKLEQNYRSTKNILKVANSVIKNNDNRMSK---------------------EL 305 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + ++ + + A+ I I N+ Sbjct: 306 W-------SAAEDGEKVELYCAVNERDE-------AKYIIDKIRNLHSDG---------- 341 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ DI +L R + ++ I F D IKD +A R ++ Sbjct: 342 VKYSDIAILYRSNYLSRVLEES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVT 397 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFAN------CGISKFQH 483 D+L+F ++ +P + I + ++ S Sbjct: 398 NSDNLAFERIINTPTRGIGNKTLDTIRNFSQINNVSYWQATIDIIQKEIVTKRTASLLLK 457 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE 540 I+ I+ + S +++ + + ID L E ++ E Sbjct: 458 FIELINTISSQINDLSLDKLLEMVINESGLLGSYQEKDTEKDRQKIDNLKELISAAKDFE 517 Query: 541 ------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 ++ LQ+ +S N + V++MT+H +KGLE VFLV Sbjct: 518 PQIELLDDNTDILQDFLSFAVLEAGE--MQADENTDSVQLMTIHASKGLEFRYVFLVAAE 575 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 VF I + + + E RL YV Sbjct: 576 EGVFPPSSIVNS----------------------EEVFDNTDSKKMQDKLAEERRLFYVA 613 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +TRA L I + +S+ + + + K++ T + K + A Sbjct: 614 VTRAMKALTISYAQVRNIFGRSSFQVKSRFIAEIDSQHLNQGKLEFTAAKPKTKQKA 670 >gi|183221021|ref|YP_001839017.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911115|ref|YP_001962670.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775791|gb|ABZ94092.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779443|gb|ABZ97741.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 727 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 119/671 (17%), Positives = 221/671 (32%), Gaps = 128/671 (19%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L ++ K + T+E L + +++D F+ + T + Sbjct: 118 LIKEILKSKEMDTKEFRPS--SLANQFSQAKDSFLTAEEFAKKKADDAYTKTI----ASV 171 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 YE+ K LDF DLI+ T L + V I K + +I++DE QDT+ IQ+ Sbjct: 172 FLEYEKRKNLRNALDFGDLILKTVILFRDFPV---ILEKYQRLWKYIMVDEYQDTNKIQY 228 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 +++SL+ S + L VGD+ QSIYS+ GA+ +L K+ + Sbjct: 229 HLVQSLS----------SFHKNLCVVGDDDQSIYSWRGADISNILNFKKDYPEAI----- 273 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 +++L ++RST I+ + S + + + + Sbjct: 274 ---VVKLEENYRSTKTIIESAAVLISHNKQRTNKTLRTKNPL------------------ 312 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + TSY + + + A I I G ++ + Sbjct: 313 ----------GDKIKLTSYQNEMEE-------AEGIVQRIQ----------VGARKGQKY 345 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 + + R + R I F D +KDL+A +++ D Sbjct: 346 SNFAIFYRTNSQSRYFEEALR----KRAIPYKIFGGFRFFDRKEVKDLIAYLSVVVNPVD 401 Query: 434 DLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEY----IQKFANCGISKFQHVIKYI 488 S + ++ SP + + + + E +++E I + K + + + Sbjct: 402 STSLLRIINSPPRGIGDTTVNRLLSYSVREGISLFECLGKEIPDIKKGTVQKLKSLYRMF 461 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS 545 + +P + +L R+ + + + L+EF+N E+ + Sbjct: 462 ESAMEDLGKKTPSEIAYDVLEHSGYREFLENEGTEDSFSRLSNLNEFVNALKEFEEANPE 521 Query: 546 SLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 S L L ++ + + V +MTVH AKGLE VF+ F H Sbjct: 522 S--SLEEYLSSISLITSEENTKDLPDYVILMTVHNAKGLEFHHVFMAGMEEGTFPHFLSL 579 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL YV +TRA L I Sbjct: 580 DSPDG----------------------------------IEEERRLAYVAITRARKHLEI 605 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 T + + R + E + K L + ++ + Sbjct: 606 SYSRFTRKFGEVDARLPSQFL-------EELPKEFLEGELTENRFGVRRPEATPRAERFQ 658 Query: 725 EREETIKQLMD 735 + EE + ++ Sbjct: 659 KSEEKFESVLA 669 >gi|184155952|ref|YP_001844292.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956] gi|183227296|dbj|BAG27812.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956] Length = 756 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 119/695 (17%), Positives = 217/695 (31%), Gaps = 140/695 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V + + ++ L + Sbjct: 30 GAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNKAAREMKERVAKLLGEAGNDVWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106 F L F + Q+ +I + I+ K + ++ L + Sbjct: 90 FHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEEQNIDTKKFEPRQLLSAISNA 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D K + + + Y++ ++N LDF+DLI+ T +L KK + Sbjct: 150 KNAMEDPATFAKNHQR--PFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKK---A 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++I +DE QDT+ Q+E++ L E + + VGD QSI Sbjct: 205 PETLTYYQNKFHYIHVDEYQDTNDAQYELVHMLAEKYE----------NICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA +L + + L ++RST IL ++V + + Sbjct: 255 YGWRGANMNNILNFEHDYP--------SAHSVMLEQNYRSTQTILKAANEVIANNLERKD 306 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ S+ + + A Sbjct: 307 KN---------------------LW-------TENGAGEKISYYRAQNEHDE-------A 331 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I I K Q +D +L R + +I + Sbjct: 332 QFIVKKIQE---------ERAKHNYQYQDFAILYRTNAQSRVIEETF----LKSTVPYTM 378 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D + I+DL+A I++ D +SF ++ +P + ++ E+ Sbjct: 379 VGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGIGMTSVERLREFAQESNLP 438 Query: 467 YEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + +K + + I L A+ S D +L + Sbjct: 439 LLAAAQNVQNANAISARTRNKIEEFGQLIAALQDEAKVLSITDLTDQVLERTGYLAELQK 498 Query: 520 RF---GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPP-TIKRAHSANHN 570 G + L+EF + T ++ LQ+L L + + Sbjct: 499 DKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDFLAGLALVSDQDDVDEAEP 558 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V +MT+H AKGLE PV+FL+ VF Sbjct: 559 AVTLMTLHAAKGLEFPVIFLIGMEEGVFPLS----------------------------- 589 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA +L I Sbjct: 590 -----RAMTDNKELEEERRLAYVGITRAKKKLYIT 619 >gi|254369794|ref|ZP_04985804.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC022] gi|157122753|gb|EDO66882.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC022] Length = 740 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 127/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89 I ++ + + S F ++ L + Q ++ + I Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 N D K+ K FI + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL+++ +L +R + +ILIDE QDT+ +Q+ ++ L D Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 + AVGD+ QSIY + GA + + + II+L ++RST + Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 IL V + V +N +LW + + ++ Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVL 317 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + A+ I I + + DI +L R + ++ Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416 Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + I + + + ++ S I+ I + S Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDK 476 Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MT+H +KGLE VFLV VF I Sbjct: 537 AILEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + + E RL YV +TRA L I S Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRSIF 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ T + K + A Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFTAAKPKTKQKA 670 >gi|311740890|ref|ZP_07714717.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium ATCC 33035] gi|311304410|gb|EFQ80486.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium ATCC 33035] Length = 841 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 115/770 (14%), Positives = 219/770 (28%), Gaps = 162/770 (21%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + + V+ + ++ L + Sbjct: 65 GAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKAAAEMKERVGGLVGPVAERMWVST 124 Query: 66 FSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 F + L Q + T + + L K Q + K R ++ Sbjct: 125 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDMQLDLKKYTPRVLANQISN 184 Query: 122 STLASL-----------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 + T + A Y+ + +DF+DLI + + Sbjct: 185 HKNELIGPKTALEKAQQTKNPFETTVAQVYAEYQRRLRAANAVDFDDLIGEVVRIFTQH- 243 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + H+LIDE QDT+ Q+ ++ +L +G + L VGD Q Sbjct: 244 --QQVVEFYRRRFKHVLIDEYQDTNHAQYALVAALVGRGELGPDA----PELCVVGDSDQ 297 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY+F GA + + +R + I L ++RST IL + V + EN Sbjct: 298 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNENR 349 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW + +Q + + Sbjct: 350 REKN---------------------LW-------TAHGEGEQIVGYVADNEHDE------ 375 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR IA I ++ DI V+ R + + + I Sbjct: 376 -ARFIASEIDSLADKGR----------SYSDIAVMYRTNNASRALEDIF----IRSGIPY 420 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463 + I+D++A R + + +D +S ++ P + I + Sbjct: 421 KVVGGTRFYERREIRDMVAYLRILDNPDDTVSLRRIINVPKRAIGDKAQGHIALHAENHG 480 Query: 464 ETVYEYIQKFANCGISKF--------QHVIKYIHELIHIAQFCS--------PHDFFTLI 507 + + + + + + + + + I Sbjct: 481 ISFGKALADVPRGDVPGLGTRAINAVGKFNDMMEGIRNQIPSMRDEVTGQPDLGELLSAI 540 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE--------------- 549 L A + + + + +D L+E ++ + + L Sbjct: 541 LDATGYKAELENSNDPQDGARLDNLNELVSVAREFTSEAANQLAASGADAVDPSELVEEG 600 Query: 550 ------LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + LE+ + V +MT+HTAKGLE PVVFL F H Sbjct: 601 EAAPGSLQAFLEKVSLVADADQIPDSETGVVTMMTLHTAKGLEFPVVFLTGWEDGQFPHM 660 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 E RL YVG+TRA +Q Sbjct: 661 RSLGDP----------------------------------KELSEERRLAYVGITRAREQ 686 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 L + + S + + + ++ +S+ Sbjct: 687 LYLTRAILRSAWGNPVTNPASRFLGEVPEDLINWRREDTDSSLTGAWGED 736 >gi|218132415|ref|ZP_03461219.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC 43243] gi|217992753|gb|EEC58755.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC 43243] Length = 766 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 119/726 (16%), Positives = 223/726 (30%), Gaps = 131/726 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + Sbjct: 27 GAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAASEMRERVDKVVSMGAEHVWVST 86 Query: 66 FSLLSSFFL-----------------TQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEF 107 F + L + +++N S KE+ + + Sbjct: 87 FHSMCVRILRRYIDRIGYDTNFTIYDSDDQKSIVREAIKKLNIDSKTFKERAVLSAISAA 146 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + + + +L+ + Y+ K N LDF+DLI+ T +L D Sbjct: 147 KDNLESPQDMREAAGSDYNLSTIARIYDEYQRVLKINNALDFDDLIVKTVELFLTDDD-- 204 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I++DE QDT+ Q+ ++ L + + L VGD+ QSIY Sbjct: 205 -VLEYYQDRFRYIMVDEYQDTNTAQFRLVSILAGKY----------KNLCVVGDDDQSIY 253 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA +L + ++I+L ++RST +IL + V + + Sbjct: 254 KFRGANIHNILNFEDAFP--------GATVIKLEQNYRSTQNILNAANNVIANNIGRKQK 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + ++ +T+Y D+ + Sbjct: 306 T---------------------LW-------TDNGDGEKVHFTTYDDAYAESYG------ 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TIS + D +L R + + I Sbjct: 332 -VASTISAKVTDG----------WNYNDCAILYRTNAQSRALEEKL----VQSNIPYKIY 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 IKD++A + I + +D + ++ P I K+ + Sbjct: 377 GGVNFYQRKEIKDILAYLKTIDNGKDSQAVKRIINVPKRGIGATTINKVQEYADERGISF 436 Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 ++ + + SK + I YI L Q S +L + R+ + Sbjct: 437 FDALMRADEITTLGRSASKLKPFITYICALRAKVQSLSLEQLVEDMLEEIRYREYLLDGD 496 Query: 522 GNE----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576 E + +DE +N + E+ L LE+ N N V +MT Sbjct: 497 TPEEVAAREENIDELINKIVTYEEECEDDKPTLSGFLEEVALVADIDNLDENSNHVMLMT 556 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VF+ +F I Sbjct: 557 IHSAKGLEFPIVFMTGMEDGLFPSYMS--------------------------------I 584 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 + EE RL YVG+TRA +L + ++ + + V Sbjct: 585 VSEDRDALEEERRLCYVGITRAKKELYLSSARIRMVRGETQYNKVSRFIKEIPDELMAVS 644 Query: 697 KIKLTN 702 + Sbjct: 645 GETSFD 650 >gi|325475282|gb|EGC78467.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola F0402] Length = 1128 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 155/945 (16%), Positives = 292/945 (30%), Gaps = 103/945 (10%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 + + + S E + L N ++KEKLK ++ I I Sbjct: 225 EAMSEYSTLPNFPESIKDEAFIKLLPIIDKISKTAKGRGNDAVKEIKEKLKIIYEKLICI 284 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +N + + + L Y KK+ +L F D+ D+L +R Sbjct: 285 ---YNFDYSREFLASFFDMLNELQKEYIYEKKQRGLLTFSDVSQLAVDVLIND---VDLR 338 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK-----NTHSSPRTLFAVGDEKQS 225 + I+IDE QD + +Q +++ + E F + P LF VGDEKQS Sbjct: 339 NFYKNNADIIMIDEFQDNNSLQRDLLFLIAEKFERSEKFVPSPHELCPNKLFFVGDEKQS 398 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY+F GA+ + + ++ + L +++R+ ++ + + +FS + Sbjct: 399 IYAFRGADVSVFRKLADDISDK-----ERLAATRLLINYRTEPTLINLFNAIFS-----K 448 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ-----ESWTSYFDSLPQES 340 + + E + + + + + DS + Sbjct: 449 VFYSEVNKPLEKNGFVPAYEAEYVPTETRAPVKGVEPKIEIMFFDKKGFNALEDSSKFLN 508 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 A +A I + +GK R D VL+R + R L Sbjct: 509 PVETEAMFLAKRILELHNQGFKIRDGKSARACSWSDFAVLLRASTKQSTYERVFRNL--- 565 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKIC 457 I + L + I D+ A+ + I D ++ +L SP N +D + + Sbjct: 566 -GIPYRSVQQRGLFNDAPINDIYAMLKIIAYPSDKKTYAQVLHSPFVNIDDDAFAVLLLN 624 Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHE-LIHIAQFCSPHDFFTLILGAKKGRQQ 516 + + E + + + + +++ ++ ++ S + Sbjct: 625 FTKAFDIPLAEKLNEKNKDAYLRACDLFARLNKNILTMSCAESVTYLWYEEAYRYFLLSN 684 Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRI 574 + ++ D L E N + L S +E ++ + V+ Sbjct: 685 EENHHYMDLYDYLFELACQADINGLTFSQFVDLLSSHIEDNERLDDMELPLDDQKDSVQF 744 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP-QSKSRNNIVS 633 +TVH +KGLE P+V + D G++ K + + P K+ N I Sbjct: 745 LTVHKSKGLEFPIVIVPDCGNRGIPEKKEGLVFYNEDMGPVLYSPKAPGLSVKAGNLIFE 804 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-HSNTSNEKKSNQRTWYDMVYDSFHND 692 L E RLLYV TRA LII +++ NE + + + Sbjct: 805 SLRDEANAKLIAETKRLLYVAATRAESYLIISGVYNHLQNEDNDCSSSDSRSLEEIKSML 864 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + K + E P ER++ L ++ + Sbjct: 865 KLSDKTISFFELLLPALPDKHEDIIFTEILPTERKKLFNNLKTQKHEKVNFEKLFASSKV 924 Query: 753 EPYILNPSTIDTKGKTNLE---------------------------SLLSDNQTFNRGLI 785 + + L I T E + G + Sbjct: 925 KEFNLAEKRITTATGLAHEINKKSKEGYLYSLTSEKDKLPVLSKNKDEQKEFTAAELGTL 984 Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRLLENPMMTTAMS 842 H L++ K K E K + + M A Sbjct: 985 THSLIE--------------ARLLNKEFIYPKGHSEVERKKIYAWADNFFNSDMYALAKE 1030 Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902 + + I+SG+ID + +++ +YKT P +H+ Sbjct: 1031 AEKLKS---EYGFLTDYEGQIVSGQIDLLFRKSGIVYVVDYKTD------EIENPDSHLT 1081 Query: 903 QLSIYEKILKDSYP----------NKS--LVCLLIYVSEPKVFII 935 QL IY+K D +K + + Y+ + Sbjct: 1082 QLKIYKKAASDLAKTESENLKENTDKPIEVKTFIFYLKTGHCVEL 1126 >gi|291542836|emb|CBL15946.1| ATP-dependent DNA helicase PcrA [Ruminococcus bromii L2-63] Length = 749 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 110/672 (16%), Positives = 214/672 (31%), Gaps = 138/672 (20%) Query: 8 SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + + + + + + + ++ Sbjct: 69 AAGELKERICAAVPEGGADIWAATFHSTCARILRRYG----DRIGYTSHFTVYGTDDQ-- 122 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLA 125 L L Q +K + + I + K+K L + D Sbjct: 123 KKLVKDILKQLNIAEKTLPVKSILSEISKAKDKMLTPEEMRKEAEFDSRKAQ-------- 174 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + Y+ K +DF+D++ NT L + + I + +I++DE Sbjct: 175 ----IAKVYEIYQTKLKTADAMDFDDMLCNTVKLF---ETAPDILDYYRNQFKYIMVDEY 227 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q++ + L + + VGD+ QSIY F GA + +L + + Sbjct: 228 QDTNKVQYKFVSLLASKY----------GNICVVGDDDQSIYKFRGATIENILSFENTFK 277 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 +I L ++RST +IL ++V S +G + Sbjct: 278 N--------AKMIRLEQNYRSTQNILNAANEVISNNTMRKGKT----------------- 312 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW ++ + + + A IA TI + + Sbjct: 313 ----LW-------TENGQGEKIKVHTAENERDE-------ANFIAQTILDGVADGR---- 350 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + D +L R + I + + D I+D++A Sbjct: 351 ------KYSDYAILYRMNAQSNAIEQAL----SRSGVPHRVIGGHRFYDREEIRDMVAYL 400 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFANCGI-----S 479 + I + DD+ ++ P + E++Y+ I++ N + Sbjct: 401 QVINNPHDDVRLSRIINVPKRGIGATTVSHAADIAAGLGESIYDVIKEAENYPQLSRASA 460 Query: 480 KFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNF 535 K + + I LI + S + + L++ Q + N I+ ++E + Sbjct: 461 KLKAFVALIDGLIEAEQSGEYSLAELYNLVIEHTSYEQYLKTEKDNPEVRIENIEELSSN 520 Query: 536 TLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ E++ + L + E+ A + +MT+H+AKGLE PVVF+ Sbjct: 521 IVKFEEDYGDEADLSAFLEEISLQTDIDNYDADA--DTCVMMTLHSAKGLEFPVVFIAGM 578 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F + + E RL YV Sbjct: 579 EEGMFPS----------------------------------VATMMNPDELNEERRLAYV 604 Query: 654 GMTRASDQLIIC 665 G+TRA + L Sbjct: 605 GITRAKEILYFT 616 >gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae] Length = 805 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 117/749 (15%), Positives = 218/749 (29%), Gaps = 162/749 (21%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF--L 74 + + P ++ NK + E + + AQ + ++ + L Sbjct: 66 VRGVQPQNILAITFTNKAAAEMRERVSSLVGPVAQRMWVSTFHSTCVRILREQAQLVPGL 125 Query: 75 TQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIK---------IRDRFNTYKMFKSTL 124 FT + ++ + S D +KK + + D +ST Sbjct: 126 NTNFTIYDSDDSKRLLSMISKDFSLDIKKFTPRLLATGISNLKNELIDADQACADAESTK 185 Query: 125 ASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + A Y++ + + +DF+DLI T + ++ + + H+LID Sbjct: 186 NPYETTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHP---PVTEYYRRRFRHVLID 242 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q+ +I L + L VGD QSIY+F GA + + +R Sbjct: 243 EYQDTNHAQYALIHELV-------GSGPDASELCVVGDSDQSIYAFRGATIRNIEEFERD 295 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 I L ++RST IL + V + EN + Sbjct: 296 YPN--------AETILLEQNYRSTQTILNAANSVIAQNENRREKK--------------- 332 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + S + + AR IA + + Sbjct: 333 ------LWTALGS-------GDPIVGYVADNEHDE-------ARFIANEVDALADKG--- 369 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + DI V+ R + + + I + I+D++A Sbjct: 370 -------VAYSDIAVMYRTNNSSRAVEDVF----MRTGIPYKVVGGTRFYERKEIRDIIA 418 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---------ETVYEYIQKFA 474 R I + +D +S ++ +P + + + + + + Sbjct: 419 YLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSLHADNHNVGFHKALLDATEDKVSMLG 478 Query: 475 NCGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE-- 524 G + + + + A D + IL + + + Sbjct: 479 ARGRNAVTGFVDMMKGIREEAANKVNEVTGMPDIGDMVSYILDVTGYKAELEKSNDPQDG 538 Query: 525 -VIDVLDEFLNFTLRNEQN---------------------------SYSSLQELISELEQ 556 +D L+E ++ + SL + + Sbjct: 539 ARLDNLNELVSVAREFSSEAANQVAYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSL 598 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + V +MT+HTAKGLE PVVFL F H Sbjct: 599 VADADQI-PDNEQGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPH---------------- 641 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 L + E RL YVG+TRA L + + S+ Sbjct: 642 ------------------LRALGEPKELAEERRLAYVGITRARRTLYLSRAMLRSSWGNP 683 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 + + ++ + +S + Sbjct: 684 VTNPPSRFLSEIPDELMDWRREEPEHSYD 712 >gi|261367063|ref|ZP_05979946.1| ATP-dependent DNA helicase [Subdoligranulum variabile DSM 15176] gi|282571182|gb|EFB76717.1| ATP-dependent DNA helicase [Subdoligranulum variabile DSM 15176] Length = 871 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 101/628 (16%), Positives = 196/628 (31%), Gaps = 122/628 (19%) Query: 86 TQEINKKSPDLKEKLKKSQDEFIKIR-DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 + I+ K +K + + K+ + + T A L + Y K Sbjct: 183 DKMIDDKFLPIKSAVSQISSYKDKLMSPEDVAAETPRDTKA--ALISKIYTTYAGRLKTA 240 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 +DF+DLI +T LL+ + R + ++++DE QDTS+ Q+ ++R L Sbjct: 241 GAMDFDDLIYHTVRLLQTDAEA---REYYQNKFRYVVVDEYQDTSIAQFHLVRLLAG--- 294 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 + VGD+ QSIY F GA + +L +++ I L ++ Sbjct: 295 -------GTNNVCVVGDDDQSIYKFRGATIENILNFEQVF--------TGAKTIRLEQNY 339 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RST++IL + V +G + LW + Sbjct: 340 RSTSNILNAANSVIKNNTGRKGKT---------------------LW------TEKGDGD 372 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 + +T+ S A IA I + +D VL R Sbjct: 373 KVHHYTAA--------SEQDEASHIADVIGEHLREG----------AHLRDHAVLYRMNA 414 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + I I D +KD+ + I++ DD+ ++ P Sbjct: 415 QSNPIETYF----ARAGIPYRIVGGQRFFDRKEVKDINSYLAVIVNPRDDVRLRRIINEP 470 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFC 498 + K+ I + + EL ++ Sbjct: 471 ARKIGASTVDKVGELAARQGVPMLQIIADVRQYPELTRAAASLEKFYEMYRELCDLSVTI 530 Query: 499 SPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRN--EQNSYSSLQELISEL 554 +F ++ ++ G ++ L + ++ + ++L + E+ Sbjct: 531 PLDEFAGEVIKKTGYEAMLKAQKEEGETRLENLGQLVSSVKTYADQNGEDATLSGFLEEV 590 Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + + V +MT+H+AKGLE P VF+V +F + Sbjct: 591 ALISDLDSYD--QDADSVTMMTIHSAKGLEFPYVFVVGMEDGIFPGDMAR---------- 638 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---S 671 + EE RL YV +TRA +L + + Sbjct: 639 ------------------------YNEEDMEEERRLCYVAITRAKKELYLSTSRSRLIFG 674 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +++ + + + + ++ Sbjct: 675 QTRRNLPSCFLSEIDPGLMEETQSPELA 702 >gi|319407484|emb|CBI81134.1| DNA helicase II [Bartonella sp. 1-1C] Length = 815 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 105/550 (19%), Positives = 182/550 (33%), Gaps = 109/550 (19%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L +Y++ K DF DL++++ + + I + + +IL+DE QDT Sbjct: 208 IGRKLYRNYQDRLKNLNACDFGDLLLHSISIFQNNPD---ILREYHNKFRYILVDEYQDT 264 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + H L VGD+ QSIY + GA+ +LR ++ Sbjct: 265 NTAQYLWLRLLAQ-------RHEKQINLCCVGDDDQSIYGWRGAKVDNILRFEQDF---- 313 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + S ++ G + S Sbjct: 314 ----SPAKIIRLERNYRSTSHILKTASHLISHNQDRLGKTLFSDQI-------------- 355 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + ++ + +DS+ + AR I I ++ Sbjct: 356 ------------NSDDEKVKIHAAWDSVEE-------ARAIGEEIEQAQRAGHSLNH--- 393 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 I +LVR L ++ + + I+D +A R + Sbjct: 394 -------IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDALAYLRVV 442 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481 + DDL+F ++ P + + R + ++ + + Sbjct: 443 VQPADDLAFERIINIPKRGLGNATLRHLYNSARARSIPLFVAAAEIITTDELKPKIRNAL 502 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + V++ + + Q + IL + E L+ EQ Sbjct: 503 RDVVENFYRWQSMLQRTPHTELAETILDDSGYTAMWQEDRSPEAPTRLENLKEMIRSMEQ 562 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L + LE + + N N V IMT+H+AKGLE VFL +F H+ Sbjct: 563 -----FENLRNFLEHVSLVMDSESNENMNAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 617 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 EE RL YVG+TRA Sbjct: 618 RSLDEGGHSG--------------------------------LEEERRLAYVGITRAKKH 645 Query: 662 LIICKHSNTS 671 L I SN Sbjct: 646 LHIWCVSNRR 655 >gi|118498158|ref|YP_899208.1| DNA helicase II [Francisella tularensis subsp. novicida U112] gi|194324331|ref|ZP_03058104.1| DNA helicase II [Francisella tularensis subsp. novicida FTE] gi|118424064|gb|ABK90454.1| DNA helicase II [Francisella novicida U112] gi|194321396|gb|EDX18881.1| DNA helicase II [Francisella tularensis subsp. novicida FTE] Length = 740 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 126/758 (16%), Positives = 234/758 (30%), Gaps = 146/758 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89 I ++ + + S F ++ L + Q ++ + I Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 N D K+ K FI + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKHYDANYAHIYTAYEERLQLDNALDF 186 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL+++ +L +R + +ILIDE QDT+ +Q+ ++ L D Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 + AVGD+ QSIY + GA + + + II+L ++RST + Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 IL V + V +N +LW + + ++ Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVEL 317 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + A+ I I + + DI +L R + ++ Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416 Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + I + + + ++ S I+ I+ + S Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELINGISAQISQHSLDK 476 Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MT+H +KGLE VFLV VF I Sbjct: 537 AVLEAGD--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + + E RL YV +TRA L I + Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRNIF 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ T + K + A Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFTVAKPKTKQKA 670 >gi|24215017|ref|NP_712498.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] gi|24196064|gb|AAN49516.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] Length = 732 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 109/617 (17%), Positives = 197/617 (31%), Gaps = 119/617 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + YE+ K N DF DLI T L +K + K + ++++DE QD Sbjct: 167 KAVSAIYKEYEKRKDANYAFDFGDLIWKTVQLFQKSSDAI---SKYRHKWEYVMVDEYQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ +Q+E++ L + R L VGD+ QSIYS+ GA+ +L ++ + Sbjct: 224 TNKVQYELVLLLAGE----------KRNLCVVGDDDQSIYSWRGADIGNILNFEKDFPES 273 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I+L ++RST++I+ V S + Sbjct: 274 V--------VIKLEENYRSTSNIILAASNVISNNTQRKEKEIF----------------- 308 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + + + A + + + T Sbjct: 309 -----------TNNPEGAPVVLNEFENESEE-------AHGVITRMRSAYSGGT------ 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + K+I + R + R + I F D IKDL+A Sbjct: 345 ----EYKNIAIFYRTNSQSRYFEEALR----NVGIPYKIFGGFRFFDRAEIKDLIAYLNV 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----ETVYEYIQKFANCGISKFQ 482 + + D +S + ++ P + + KI E E + + SK + Sbjct: 397 VSNPLDSVSLLRIINYPPRGIGDSGVEKIREFSLEKGISILEVLGQEDIPLKKAAKSKGK 456 Query: 483 HVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +LI ++ SP + +L E ++ L E +N Sbjct: 457 ELYNLFCDLIEKSEKGLSPSEIALELLNRSGLMSHLKDEGTEESVARLENLQELVNSIEE 516 Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E+ + SL+E ++++ + V +MTVH AKGLE VVFL Sbjct: 517 YEKNSDSPSLEEYLNQISLITSEE--DSKELTDYVNLMTVHNAKGLEFEVVFLSGLEEGT 574 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H + EE RL YV +TR Sbjct: 575 FPHSMSLEESHFGD---------------------------------EEERRLFYVALTR 601 Query: 658 ASDQLIICKHSNTSN----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 A ++L + + E + R ++ + F N V + + + Sbjct: 602 AREELFLSYCRTSRKFGKVEDRIPSRFLSEIPRECFGNRGYVSRERTARKPQGPPVASKI 661 Query: 714 WSTHHPENTPLEREETI 730 ++ + Sbjct: 662 RQANNELESHHAPPPDP 678 >gi|58336855|ref|YP_193440.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM] gi|227903414|ref|ZP_04021219.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796] gi|58254172|gb|AAV42409.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM] gi|227868890|gb|EEJ76311.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796] Length = 746 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 125/770 (16%), Positives = 237/770 (30%), Gaps = 138/770 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENNVAPWNILAITFTNKAASEMREREQDLLGPAAENIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L +D Sbjct: 90 FHALCVRILRRDADKINYDHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGVLSAISNG 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ F+++ + + Y+ +++ ++DF+DLI+ T L KK + Sbjct: 150 KNDLLDPDAFEASASSPFEKMTAKIYKEYQRRLRRDQIMDFDDLIMQTLVLFKKSPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + +IL+DE QDT+ Q+E+ SL + + VGD QSIY Sbjct: 208 -LQYYQDKFRYILVDEYQDTNQAQYELCHSLAA----------KHKNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + ++ ++ +K ++L ++RST IL+ + V +N + + Sbjct: 257 WRGANMENIMNFEQDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKAKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW Q + Q+ ++ + A Sbjct: 311 ---------------------LW-------TDQGDGQKITYYQAQSGDDE-------AHY 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + KD +L R + + I Sbjct: 336 IISKIKKEVED---------KKRSYKDFAILYRTNAQSRTVEEAF----VKSNIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET----- 463 D IKD+MA + + + D +S ++ +P + K+ T E Sbjct: 383 GHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADENNYTAL 442 Query: 464 -ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + K + + I AQ IL + Sbjct: 443 DAMEHVAESTISTRAAKKLNDFGIKLRDAIAYAQIHGVTGLTEKILEDFDYTEALRRENT 502 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + LDEFL T R E + + L + ++E+ N+V Sbjct: 503 IEAETRLENLDEFLTVTKRFDDHYEPEDDDSNPLSDFLAEVSLLSDQDDIDDD--GNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ +F + Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEDGLFPLQ-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690 + + EE RL YVG+TRA +L + + + + + D + Sbjct: 589 --RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRTQNNPASRFLDEIEPKDI 646 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 E +K++ + + + + ++ + E+K Sbjct: 647 QKEANEKLQNSFIQSHYQTAPFANRAERARAEVYTAKKATGAVGAEKKGW 696 >gi|212716069|ref|ZP_03324197.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM 16992] gi|212661436|gb|EEB22011.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM 16992] Length = 907 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 115/727 (15%), Positives = 218/727 (29%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P + +S + + I L + Sbjct: 90 AAAEMRERLAALVGPEAEHMWISTFHSACVRILRRDGKEI-----GLTSGFSIYDTADC- 143 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA- 125 L K + + K D K L QD+ + + + A Sbjct: 144 ERLVKLISGDLNIDTKRYTPRMLLGKISDCKNSLTSWQDQLKSVNCDYKPGQRGYQVSAG 203 Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 L + A Y+ +DF+DLI+ T +L ++ + + ++ +DE Sbjct: 204 DVDELVAVVYAEYQHRLAMANAVDFDDLIMRTVELFQR---CPQVSEYYRHKFRYVFVDE 260 Query: 185 VQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 QDT+ Q+ ++R L+ D + P + VGD QSIY+F GA+ + + Sbjct: 261 YQDTNHAQYVLVRELSGIDSGEQPDPQMRGAGRVGPSWITVVGDSDQSIYAFRGADIRNI 320 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 ++ I L ++RST IL + V + EN + Sbjct: 321 QDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIARNENRKPKK--------- 363 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 LW + +A A IA I+ + Sbjct: 364 ------------LWTALGEGDKIVGYAA--------------DNAQQEAGWIANEIARIH 397 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + I +DI ++ R + + + + + Sbjct: 398 EEE---------GIAYRDIAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERKE 444 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 IKD +A + I++ D+++ +L P I + +T + + Sbjct: 445 IKDALAYLQAIVNPADNVNVRRILNVPKRGLGVRAEGLIASYADAHDTTFFGAIEHMEQI 504 Query: 478 ISKFQHVIKYIHELIHIAQFC---------SPHDFFTLILGAKKGRQQFISRFGNE---V 525 K + + P + +L ++ + Sbjct: 505 EGMSARTTKPLGVFRDMMHGLADFAKDHDTKPSEVVAEVLSKSGILEELQRSEDPQDASR 564 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 +D L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 565 VDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKGL 624 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P VFL F H+ S Sbjct: 625 EYPYVFLTGMEQGTFPHQ----------------------------------RAMEDTSE 650 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E RL YVG+TRA +L + + + + ++N + + K+ + Sbjct: 651 LAEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMHSQFLDEIPDELIDWKRREAGVE 710 Query: 704 INKDEWI 710 + W Sbjct: 711 RMRASWR 717 >gi|328462071|gb|EGF34244.1| ATP-dependent helicase [Lactobacillus helveticus MTCC 5463] Length = 745 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 122/769 (15%), Positives = 234/769 (30%), Gaps = 138/769 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + QV+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMREREQKLLGPAAQNIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 90 FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILSAISNG 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D ++ +A + Y+ +++ ++DF+DLI+ T L KK + Sbjct: 150 KNDLLD--PKAFAASASSPFDKMAAKIYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +IL+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 208 ---LHYYQNKFRYILVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ + +K ++L ++RST IL+ + V +N + Sbjct: 255 YGWRGANMENIMNFESDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + ++ + A Sbjct: 309 KN---------------------LW-------TDQGEGAKVTYYQAQSGDDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + + KD +L R + + I Sbjct: 334 HYIISKIKEEVEA---------KKRTYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET- 465 D IKD+MA + + + D +S ++ P + K+ E Sbjct: 381 VGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPKRGIGAATVDKLLAFADENHYN 440 Query: 466 -----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + K + + I AQ IL + + Sbjct: 441 ALDAMDHVAESPINTRTAKKLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSSLQE---LISELEQ-YPPTIKRAHSANHNEVR 573 E + LDEFL+ T R + + E L L + + + + N+V Sbjct: 501 NTIEAETRLENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F + Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEDGLFPLQ-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690 + + EE RL YVG+TRA +L + + + + + D + Sbjct: 589 --RAMMDDNELEEERRLAYVGITRAKKELYLTNAYSRMMYGRMQNNPPSRFLDEIDPKDL 646 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 E +++ + + + ++ + +++ Sbjct: 647 QKEESNQLQSSFIKSNFQSQTAPFARKAERARAQVYTASGAVGAEKKGW 695 >gi|168210476|ref|ZP_02636101.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str. ATCC 3626] gi|170711446|gb|EDT23628.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str. ATCC 3626] Length = 1271 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 124/652 (19%), Positives = 227/652 (34%), Gaps = 55/652 (8%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F L S + T+ + +S + E L+ + E KM+ Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178 L + Y + K++ +LDF DL ++L +D + + + + Sbjct: 339 KCLSGLIIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEDGNIKPSQVALEFKDKFE 398 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P+ L Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296 + ++ I L +FRS +I+ V+ +F + L D + Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343 +S E + + + E + + S Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSNEDELGEEEEDLDSIQ 567 Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR I I ++ + GK R I+ KDI++L+R K+ Sbjct: 568 LEARIIGKKIKELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ + Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684 Query: 457 CTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + Y + + K ++ + Y+++ A + +F + Sbjct: 685 RLLNRDKYFFEIIKEVVDGTYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E S+ L I+ + Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + K + K + E R+LYV TRA ++LII + + Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 19/187 (10%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144 Query: 829 TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + +S Y E+ +I ++ + + G ID Sbjct: 1145 QKFFKSELGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + +YKT + E E + Q+++Y+ L + L K Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEAFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1264 Query: 932 VFIIPQN 938 I + Sbjct: 1265 ELKISKE 1271 >gi|323467081|gb|ADX70768.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus H10] Length = 753 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 120/692 (17%), Positives = 214/692 (30%), Gaps = 135/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + QV+ N + ++ Q L + Sbjct: 35 GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMREREQKLLGPAAQNIWMST 94 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 95 FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILSAISNG 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D ++ +A + Y+ +++ ++DF+DLI+ T L KK + Sbjct: 155 KNDLLD--PKAFAASASSPFDKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET 212 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +IL+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 213 ---FHYYQNKFRYILVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 259 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ + +K ++L ++RST IL+ + V +N + Sbjct: 260 YGWRGANMENIMNFESDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + ++ + A Sbjct: 314 KN---------------------LW-------TDQGEGAKVTYYQAQSGDDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + + KD +L R + + I Sbjct: 339 HYIISKIKEEVEA---------KKRTYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D IKD+MA + + + D +S ++ P + K+ E Sbjct: 386 VGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPKRGIGATTVDKLLAFADENHYN 445 Query: 467 YEYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 K + + I AQ IL + + Sbjct: 446 ALDAMDHVGESPINTRTAKKLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAE 505 Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSSLQE---LISELEQ-YPPTIKRAHSANHNEVR 573 E + LDEFL+ T R + + E L L + + + + N+V Sbjct: 506 NTIEAETRLENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVA 565 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F + Sbjct: 566 LMTLHAAKGLEFPVVFLVGMEDGLFPLQ-------------------------------- 593 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + EE RL YVG+TRA +L + Sbjct: 594 --RAMMDDNELEEERRLAYVGITRAKKELYLT 623 >gi|265764162|ref|ZP_06092730.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16] gi|263256770|gb|EEZ28116.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16] Length = 786 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 213/689 (30%), Gaps = 129/689 (18%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A + + + + Y E ++ +DF+DL++ T L + + + ++ ++L+ Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L + Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I + +L ++RST I+ + + E S Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + + +Y D + + I+ + Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + D +L R + + R + IKD++ Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474 A R +++ D+ +F ++ P + + KI T +++ + + Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 +K Q I + + + ++ T I+ + E + ++E Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518 Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 +N + E N+ SL + +SE+ + +V +MTVH+AKGLE Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 VF+V +F E Sbjct: 578 RNVFVVGMEENLFPSGMAGDSS----------------------------------RAME 603 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV +TRA + + K + + D ++ + Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663 Query: 706 KDEWIAYEWSTHHP-------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 + + E + + P L+ Sbjct: 664 DEGAGRFRREMEEGYSRHSSSERFSARPSADRPEREQPKAQIIAPTVPRNLKKVSGTTLS 723 Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786 PS+ G ++ + +++ F G +I Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752 >gi|134301332|ref|YP_001121300.1| DNA helicase II [Francisella tularensis subsp. tularensis WY96-3418] gi|134049109|gb|ABO46180.1| DNA helicase II [Francisella tularensis subsp. tularensis WY96-3418] Length = 740 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 198/617 (32%), Gaps = 110/617 (17%) Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 + + + K T ++ YEE + + LDF DL+++ +L +R Sbjct: 148 KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDFADLLLHLYELFSFN---QQLR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + +ILIDE QDT+ +Q+ ++ L D + AVGD+ QSIY + Sbjct: 205 EYYQNKFKYILIDEFQDTNHVQYMWLKLLITD----------NNYMMAVGDDDQSIYGWR 254 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + II+L ++RST +IL V + V +N Sbjct: 255 GAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKNILKVANSVIKNNDNRMSK--- 303 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 +LW + + ++ + + A+ I Sbjct: 304 ------------------ELW-------SAAEDGEKVVLYCAVNERDE-------AKYII 331 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + + DI +L R + ++ I F Sbjct: 332 DKIRQLHNDG----------VDYSDIAILYRSNYLSRVLEES----CIYASIPYRIYGGF 377 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 D IKD +A R ++ D+L+F ++ +P + I + + + ++ Sbjct: 378 RFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIGNKTLETIRNYAQINSLSYWQA 437 Query: 470 IQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---R 520 S I+ I + S ++ + Sbjct: 438 TLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDKLLESVINQSGLLASYQEKNSE 497 Query: 521 FGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574 + ID L E ++ E ++ LQ+ +S + V++ Sbjct: 498 KDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSFAVLEAGE--MQADEATDSVQL 555 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H +KGLE VFLV VF I + + Sbjct: 556 MTIHASKGLEFRYVFLVAAEEGVFPPSSIVNF----------------------EEVFDN 593 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + E RL YV +TRA L I S +S+ + V + Sbjct: 594 TSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRSIFGRSSFQVKSRFVAEIDSQHLS 653 Query: 695 VKKIKLTNSINKDEWIA 711 K++ T + K + A Sbjct: 654 QGKLEFTAAKPKTKQKA 670 >gi|260662791|ref|ZP_05863685.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN] gi|260552872|gb|EEX25871.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN] Length = 756 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 118/695 (16%), Positives = 217/695 (31%), Gaps = 140/695 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V + + ++ L + Sbjct: 30 GAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNKAAREMKERVAKLLGEAGNDVWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106 F + F + Q+ +I + I+ K + ++ L + Sbjct: 90 FHAMCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEEQNIDTKKFEPRQLLSAISNA 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D K + + + Y++ ++N LDF+DLI+ T +L KK + Sbjct: 150 KNAMEDPATFAKNHQR--PFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKK---A 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + ++I +DE QDT+ Q+E++ L E + + VGD QSI Sbjct: 205 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYE----------NICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA +L + + L ++RST IL ++V + + Sbjct: 255 YGWRGANMNNILNFEHDYPN--------AHSVMLEQNYRSTQTILKAANEVIANNLERKD 306 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ S+ + + A Sbjct: 307 KN---------------------LW-------TENGAGEKISYYRAQNEHDE-------A 331 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I I K Q +D +L R + +I + Sbjct: 332 QFIVKKIQE---------ERAKHNYQYQDFAILYRTNAQSRVIEETF----LKSTVPYTM 378 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D + I+DL+A I++ D +SF ++ +P + ++ E+ Sbjct: 379 VGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGIGMTSVERLREFAQESNLP 438 Query: 467 YEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + +K + + I L A+ S D +L + Sbjct: 439 LLAAAQNVQNANAISARTRNKIEEFGQLITALQDEAKVLSITDLTDQVLERTGYLAELQK 498 Query: 520 RF---GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPP-TIKRAHSANHN 570 G + L+EF + T ++ LQ+L L + + Sbjct: 499 DKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDFLAGLALVSDQDDVDEAEP 558 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V +MT+H AKGLE PV+FL+ VF Sbjct: 559 AVTLMTLHAAKGLEFPVIFLIGMEEGVFPLS----------------------------- 589 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA +L I Sbjct: 590 -----RAMTDNKELEEERRLAYVGITRAKKKLYIT 619 >gi|329667843|gb|AEB93791.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026] Length = 748 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 130/761 (17%), Positives = 228/761 (29%), Gaps = 136/761 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L + +D Sbjct: 90 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 149 Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K F ++ + + + Y+ K++ ++DF+DLI+ T L KK Sbjct: 150 KNDLLTPKDFKDQAASPFEKVTAQVYSEYQHRLKRDQIMDFDDLIMQTLVLFKKD---QE 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 207 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + Q + + I+L ++RST IL + V + Sbjct: 257 WRGANMENILNFEHDYQDD------EVTTIKLEQNYRSTGHILDAANSVIKNNLKRKPKK 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + + A Sbjct: 311 ---------------------LW-------TDKGAGDKIDYYRAQSGNDE-------ALF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I I KD VL R + + I Sbjct: 336 IISKIKEEIKEHQR---------DYKDFAVLYRTNAQSRNVEEAL----VKANIPYRIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A + + + D +SF ++ P + K ++ + E Sbjct: 383 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + I ++ IL ++ + Sbjct: 443 ETFKNLSLAPITGRPARTLATFGTALKDAIEYSKTHGVTGLTEKILADFGYKEALENEHT 502 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + L+EFL T R E ++L + +SE+ N+V Sbjct: 503 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHND 692 S EE RL YVG+TRA +L I S + + + + Sbjct: 589 --RAAEDPSELEEERRLAYVGITRAEKKLYITNAFSRMMYGRPQRNQPSRFIDEIEDKDL 646 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 E V + + I+ I + P E K+ Sbjct: 647 EFVNPMPSNSVISVPFDIRRKEQAKSHAYFPKITIEEAKKA 687 >gi|315037777|ref|YP_004031345.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112] gi|312275910|gb|ADQ58550.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112] Length = 748 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 123/773 (15%), Positives = 242/773 (31%), Gaps = 138/773 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + QV+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAATEMREREQKLLGPAAENIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKS------PDLKEKL---------KKSQDEFIKI 110 F L L + I + +++ L + Sbjct: 90 FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGVLAAISNG 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + F++T +A + Y+ +++ ++DF+DLI+ T L KK + Sbjct: 150 KNDLLDPEAFETTASSPFEKMAAKIYKEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 208 -LHYYQNKFRYILVDEYQDTNEAQYQLCHALAAQY----------KNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + ++ + QK ++L ++RST IL+ + V +N + + Sbjct: 257 WRGANMENIMNFEHDYQKD------GVRTVKLEQNYRSTGHILSAANSVIKNNQNRKDKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW Q Q+ ++ + A Sbjct: 311 ---------------------LW-------TDQGEGQKVTYYQAQSGDDE-------AHY 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + K+ +L R + + I Sbjct: 336 IISKIQEEVKDKHR---------SYKNFAILYRTNAQSRTVEEAF----VKSNIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-- 466 D IKD+MA + + + D +S ++ +P + K+ T + Sbjct: 383 GHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADDNHYTVL 442 Query: 467 ----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + K + + I AQ S IL + Sbjct: 443 DAMDHVAESPISTRAAKKLSDFGAKLRDAIAYAQTSSVTGLTEKILEDFDYTDALKAENT 502 Query: 523 NE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E ++ LDEFL+ T R E++ + L + ++E+ N+V Sbjct: 503 IESETRLENLDEFLSVTKRFDDHYEPEEDDSNPLSDFLAEVSLLSDQDDLDED--DNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ +F + Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEDGLFPLQ-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690 + + EE RL YVG+TRA +L + + + + + D + Sbjct: 589 --RSMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDSKDL 646 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 + E +K++ + + + ++ + Sbjct: 647 HKEENEKLEGSFIKSSFAATSAPFARKAERARATVYTAKKASGAVGAEKKGWS 699 >gi|78221316|ref|YP_383063.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15] gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15] Length = 742 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 111/757 (14%), Positives = 231/757 (30%), Gaps = 134/757 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ ++++ + V + ++ + L A + Sbjct: 27 GAGSGKTRVIVHRIAHLICNLGVPPWQILAVTFTNKAAGEMRERVERLVGA-GEAPLIAT 85 Query: 66 FSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F + FL + + ++ K ++ L + Sbjct: 86 FHSTCARFLRRDIHHLGYDSSFAIYDDKDAEKLLKEVIAGLGLDEKRFPARSFAAAIDDC 145 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 ++R + + + + Y+E KK LDF DL++ T LL++ + Sbjct: 146 KNRGIPPGEIPTGDYTGEMLARVYGAYQERLKKCNALDFGDLLMLTVRLLEEHPE---VL 202 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + + IL+DE QDT+ IQ+ ++R L + R L VGD+ QSIY + Sbjct: 203 ARYRDKYRWILVDEYQDTNPIQYRLVRLLAGE----------RRNLCVVGDDDQSIYRWR 252 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+ + +L ++ ++L ++RST +IL V + + + Sbjct: 253 GADIRNILDFEKDFP--------GVVTVKLEQNYRSTQNILAAAGAVVAKNRGRKAKTLW 304 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 S + + D + AR + Sbjct: 305 SENP----------------------------AGEAIVYRRLSDEREE-------ARFVC 329 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 + + +D+ V R + +I I Sbjct: 330 REVEKHVRRGGDL----------RDVAVFYRTNAQSRVIEDAMVAD----GIPYHMVGGM 375 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469 + + +KD++A + +++ D++S ++ P + K+ + +Y+ Sbjct: 376 RFYERMEVKDILAYLKVLVNPADEVSLKRIINVPARGIGHATVDKVAELAFRKGIILYDA 435 Query: 470 IQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 + + K + + + +A + + I+ + + Sbjct: 436 FSEASTSGLLSTGPRGKIAGFMALMEQFAGLAGTVPLSELASRIIDGTGYAAKLKEERSD 495 Query: 524 EVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E D L E + E+ + +L + ++ +MT+H Sbjct: 496 EAQDRLDNLQELCSAMEEFERTSDEKTLAAFLEQVALVSDLE--RGEGKRESATLMTLHA 553 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVF++ ++F H Sbjct: 554 AKGLEFPVVFMIGMEEKLFPHVRSLDDP-------------------------------- 581 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 EE RL YVGMTRA ++LI+ + + D + ++ + Sbjct: 582 --EAMEEERRLCYVGMTRARERLILTNARRRRLFGQDQVNMSSRFIADVPRDLLDLED-E 638 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 +S E T E T + ++ Sbjct: 639 YQSSFGFGAGRGLERETTAAEPTRHNLASIFETEIEP 675 >gi|332040845|gb|EGI77217.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624] Length = 846 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 110/684 (16%), Positives = 208/684 (30%), Gaps = 115/684 (16%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE ++ V+DF +L++ + +LL+ A +R + HILIDE QDT+ + Sbjct: 208 ELYQLYEEQCQREGVVDFGELLLRSYELLRDH---APVREHYQRRFRHILIDEFQDTNKL 264 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I+ L +N +FAVGD+ QSIY+F GA + R + Sbjct: 265 QYAWIKLLAGQGASHENA------VFAVGDDDQSIYAFRGARVGNMADFVREFHVQ---- 314 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS ++IL + + S ++ G + + G V++ Sbjct: 315 ----HQIKLEQNYRSYSNILDSANALISHNKHRLGKNLRTEQ---------GAGEPVRVV 361 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 E ++Q + DS + + G++ I Sbjct: 362 ESSSDFAEAQWLIDEIKQLIRDDSSAAPGRLKQASAP-------LGGSEDTPVPSVGANI 414 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 K++ VL R + +I + I + IK +A R + + Sbjct: 415 ARKEMAVLYRSNAQSRVIETAL----FNSGIPYKVYGGLRFFERAEIKHALAYLRLLENP 470 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-----ETETVYEYIQKFANCGISKFQHVIK 486 DD SF+ ++ P I ++ +++ + + + + Sbjct: 471 NDDTSFLRVVNFPPRGIGARSIEQLQDAARAANQGAGSSLHAAVNAMSGKAGANLSAFVA 530 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYS 545 I L Q + + L+L + + R G + I+ L+E + Sbjct: 531 KIDVLREQTQGLTLREIIELVLEHSGLVEHYRAEREGADRIENLEELVTAAESFVSIEGF 590 Query: 546 S--------------------LQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLE 584 L L + L + V++MTVH +KGLE Sbjct: 591 GRDAEATAAAENAAPDADGEVLSPLAAFLTHAALEAGDNQAQDGQDAVQLMTVHASKGLE 650 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVF+ +F H++ Sbjct: 651 FDVVFITGLEEGLFPHENSLSDFDG----------------------------------L 676 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 EE RL+YV +TRA +L + + + + + Sbjct: 677 EEERRLMYVAITRARKRLYLSLAQT----------------RMLHGQTRYHIRSRFLDEL 720 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 ++ + + + ++ + Sbjct: 721 PEETLKWVTPRNQGFGSGFTPQNSYGPGRGNGAGGGAWNSGWANASRSDSAYGRDTGSSL 780 Query: 765 KGKTNLESLLSDNQTFNRG-LIIH 787 +E G + H Sbjct: 781 SSSKVVEQAQEAATGLRIGMSVFH 804 >gi|156503119|ref|YP_001429184.1| DNA helicase II [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953989|ref|ZP_06558610.1| DNA helicase II [Francisella tularensis subsp. holarctica URFT1] gi|295312608|ref|ZP_06803360.1| DNA helicase II [Francisella tularensis subsp. holarctica URFT1] gi|156253722|gb|ABU62228.1| DNA helicase II [Francisella tularensis subsp. holarctica FTNF002-00] Length = 740 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 127/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89 I ++ + + S F ++ L + Q ++ + I Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 N D K+ K FI + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL+++ +L +R + +ILIDE QDT+ +Q+ ++ L D Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 + AVGD+ QSIY + GA + + + II+L ++RST + Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 IL V + V +N +LW + + ++ Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVL 317 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + A+ I I + + DI +L R + ++ Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416 Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + I + + + ++ S I+ I + S Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDK 476 Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MT+H +KGLE VFLV VF I Sbjct: 537 AVLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + + E RL YV +TRA L I S Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMRALTISYAQVRSIF 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ T + K + A Sbjct: 633 GRSSFQVKSRFVTEIDSQHLSQGKLEFTAAKPKTKQKA 670 >gi|89256929|ref|YP_514291.1| DNA helicase II [Francisella tularensis subsp. holarctica LVS] gi|115315293|ref|YP_764016.1| DNA helicase II [Francisella tularensis subsp. holarctica OSU18] gi|167009993|ref|ZP_02274924.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC200] gi|254368194|ref|ZP_04984214.1| DNA helicase II [Francisella tularensis subsp. holarctica 257] gi|89144760|emb|CAJ80095.1| DNA helicase II [Francisella tularensis subsp. holarctica LVS] gi|115130192|gb|ABI83379.1| DNA helicase II [Francisella tularensis subsp. holarctica OSU18] gi|134254004|gb|EBA53098.1| DNA helicase II [Francisella tularensis subsp. holarctica 257] Length = 740 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 127/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89 I ++ + + S F ++ L + Q ++ + I Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 N D K+ K FI + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL+++ +L +R + +ILIDE QDT+ +Q+ ++ L D Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 + AVGD+ QSIY + GA + + + II+L ++RST + Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 IL V + V +N +LW + + ++ Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVL 317 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + A+ I I + + DI +L R + ++ Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416 Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + I + + + ++ S I+ I + S Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDK 476 Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MT+H +KGLE VFLV VF I Sbjct: 537 AVLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + + E RL YV +TRA L I S Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMRALTISYAQVRSIF 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ T + K + A Sbjct: 633 GRSSFQVKSRFVTEIDSQHLSQGKLEFTAAKPKTKQKA 670 >gi|94994523|ref|YP_602621.1| DNA helicase II [Streptococcus pyogenes MGAS10750] gi|94548031|gb|ABF38077.1| DNA helicase II [Streptococcus pyogenes MGAS10750] Length = 772 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L D + + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++I+ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L S D +L + E I+ ++EFL+ T Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + K + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + E T + L ++ + + + + P Sbjct: 661 FSTETHTQFGQGMSLSEALQARKTQAQVRQSAQPMQAHTIPSASTSSVLP 710 >gi|71903614|ref|YP_280417.1| DNA helicase II [Streptococcus pyogenes MGAS6180] gi|139473666|ref|YP_001128382.1| DNA helicase II [Streptococcus pyogenes str. Manfredo] gi|71802709|gb|AAX72062.1| DNA helicase II [Streptococcus pyogenes MGAS6180] gi|134271913|emb|CAM30151.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo] Length = 772 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L D + + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++I+ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L S D +L + E I+ ++EFL+ T Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + K + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + E T + L ++ + + + + P Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710 >gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338] gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338] Length = 771 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 102/658 (15%), Positives = 204/658 (31%), Gaps = 125/658 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 272 -------AKVVLLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI N++ + Sbjct: 306 --LW-------TQNADGEQIVYYRARDEREE-------AVFVASTIDNIVREEGK----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 397 IANTADNISYERIVNEPKRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGKAAQAV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + + + + +L + E I+ ++EFL T Sbjct: 457 WDLANLLMKFRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQARIENIEEFLTVTKN 516 Query: 539 NE---------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + ++ L +++L T V +MT+H AKGLE P+VF Sbjct: 517 FDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAE--VTLMTLHAAKGLEFPIVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA L + + + K++ + + + + + + + Sbjct: 601 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPANSSFGVR 660 Query: 710 --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 + + + L++ ++ + + K P + S Sbjct: 661 YSNSSDEQLTFGQGMSLQQALQARKAKVQPTSSRGAQPFSKAGKAVPVGQSASASKEA 718 >gi|225351915|ref|ZP_03742938.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157162|gb|EEG70501.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 905 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 118/727 (16%), Positives = 219/727 (30%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P + +S + + I L + Sbjct: 90 AAAEMRERLASLVGPEAEHMWISTFHSACVRILRRDGKEI-----GLTSGFSIYDTADC- 143 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA- 125 L K + + K D K L QD+ + + + A Sbjct: 144 ERLVKLISGDLNIDTKRYTPRMLLGKISDCKNSLISWQDQLKSVNCDYKPGQRGYQVSAG 203 Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 L + A Y+ +DF+DLI+ T +L ++ + + +I +DE Sbjct: 204 DVDELVAVMYAEYQYRLAMANAVDFDDLIMRTVELFQR---CPQVSEYYRHKFRYIFVDE 260 Query: 185 VQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 QDT+ Q+ ++R L+ D + P + VGD QSIY+F GA+ + + Sbjct: 261 YQDTNHAQYVLVRELSGIDSGEQPDPHMRGAGRVGPSWITVVGDSDQSIYAFRGADIRNI 320 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 ++ I L ++RST IL + V + EN + Sbjct: 321 QDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIARNENRKPKK--------- 363 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 LW + +A A IA I+ + Sbjct: 364 ------------LWTALGEGDKIVGYAA--------------DNAQQEAGWIANEIARIH 397 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + + +DI ++ R + + + + + Sbjct: 398 NEE---------GVAYRDIAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERRE 444 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFAN- 475 IKD +A + I++ D+++ +L P T +E I+ Sbjct: 445 IKDALAYLQAIVNPADNVNVRRILNVPKRGLGVRAEGLVASYADAHGTTFFEAIEHMEQI 504 Query: 476 -----CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 +HEL A P + +L ++ + Sbjct: 505 EGMSTRTTKPLSAFRDMMHELAAFAKDHDTKPSEVVAEVLAKSGILEELQRSEDPQDASR 564 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 +D L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 565 VDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKGL 624 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P VFL F H+ S Sbjct: 625 EYPYVFLTGMEQGTFPHQ----------------------------------RAMEDTSE 650 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E RL YVG+TRA +L + + + + +++ + + K+ + Sbjct: 651 LAEERRLAYVGITRAKRRLYVTRAAVRAQWGQASDMMPSQFLDEIPDELIDWKRREAGVE 710 Query: 704 INKDEWI 710 + W Sbjct: 711 RMRASWQ 717 >gi|299146105|ref|ZP_07039173.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23] gi|298516596|gb|EFI40477.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23] Length = 792 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 100/677 (14%), Positives = 212/677 (31%), Gaps = 125/677 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y + ++ +DF+DL++ T L + + + + ++L+D Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L +I Sbjct: 229 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E + S Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R I IKD++A Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KQSIPYKIYGGLSFYQRKEIKDVIA 402 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P+ + + KI + +++ + + Sbjct: 403 YFRLVVNPNDEEAFKRIINYPVRGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I I + ++ T I+ E + ++E Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + + +MTVH+AKGLE Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGERITLMTVHSAKGLEFK 581 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D + ++ + Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVHYLQLPHEAGVSRAVD 667 Query: 707 DEWIAYEWSTH----HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 + + + + E+ + + S + ++ + ++PS+ Sbjct: 668 EGAGRFRREIEGGFTRSASPSRAPFGSTSSEQRERPKAQIIASSVPRNLKKVSTVSPSSG 727 Query: 763 DTKGKTNLESLLSDNQT 779 + S+ Sbjct: 728 AQATSSTSPSVAGVQAG 744 >gi|322375245|ref|ZP_08049758.1| ATP-dependent nuclease subunit A [Streptococcus sp. C300] gi|321279508|gb|EFX56548.1| ATP-dependent nuclease subunit A [Streptococcus sp. C300] Length = 801 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 135/839 (16%), Positives = 275/839 (32%), Gaps = 124/839 (14%) Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ IQ ++ L S+ F VGD KQSIY F A+P+ + Sbjct: 1 MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 49 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + ++ +I L +FRS++++L+ + VF + + + + + + Sbjct: 50 FQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYNSMHQLVFA 105 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 ++ + ++ + R + I + Sbjct: 106 NTK-------LTPNPDNKAEFLLYDKDDSEQEEEESQTDTKLTGEMRLVLKEILKLHQE- 157 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419 + + K+I +L R ++Y I V + L +K Sbjct: 158 --------KGVAFKEIALLTSSRSR----NDQILLALSEYGIPVKTDGEQNNYLQSLEVK 205 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478 ++ R I + D + V ++KSP+F+F ED++ ++ Q+ E + +K N Sbjct: 206 VMLDTLRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKIEDKAQENLYEKLVNAQKL 265 Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 K + + A+ S +D I + + G Sbjct: 266 ATSQKNLIYTALAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 325 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580 L + E++++ L I ++Q A + + V ++T+H + Sbjct: 326 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELLTIHKS 385 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSR 628 KGLE P VF+++ + + + + Sbjct: 386 KGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIP 445 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675 + + K L+ ++ E RLLYV MTRA +L + + + Sbjct: 446 SLTYTQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAANNGKLDS 505 Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725 N + W + F D + + P Sbjct: 506 NTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTREAIGQLENKSPLQDSSQADNR 565 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768 + ETIK+ ++ K + + + I P + PS I + Sbjct: 566 QSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEITNQTQSSE 625 Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 S G H+L+Q I + + + + Sbjct: 626 KKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETL---KQVQTSPAVR 682 Query: 822 KNL-LLSITRLLENPMMTTAMSC--DSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876 + L I + + ++ Y E S K K+D ++ G +D + + Sbjct: 683 DKINLSKILAFFDTALGQEILANTSHLYREQPFSMLKKDQKSKEDFVVRGILDGYLLYED 742 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +F+YKT + E + + QL++Y + L +Y +++ LI + + +V ++ Sbjct: 743 RIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYLILLGKDEVQVV 799 >gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99] gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99] Length = 769 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 107/640 (16%), Positives = 191/640 (29%), Gaps = 121/640 (18%) Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 I + + + + A Y+ + LDF+DLI T +L+ I Sbjct: 160 IDPDRAVSDLSEDSDDLARTVASVYAEYQRRLRAANALDFDDLIGETVGILQ---AFPDI 216 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ Q+ ++R L + P L VGD QSIY+F Sbjct: 217 AGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIYAF 276 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + +R + I L ++RST +IL+ + V S + Sbjct: 277 RGATIRNIEDFERDYP--------DATTILLEQNYRSTQNILSAANSVISRNSGRREKR- 327 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + + AR + Sbjct: 328 --------------------LW-------TDAGAGELIVGYVADNEHDE-------ARFV 353 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A I + D I D+ V R + + + I Sbjct: 354 AEEIDALAERDE---------ITYSDVAVFYRTNNSSRSLEEVF----IRAGIPYKVVGG 400 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468 + I+D++A R + + D +S +L +P + + T + Sbjct: 401 VRFYERKEIRDIVAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGAGFSD 460 Query: 469 --------YIQKFANCGISKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFI 518 + + ++ + EL + + +L R++ Sbjct: 461 ALVAAAEGKVPMLNSRAEKAIAGFVELLDELRGRLDSSEGDVGELVEAVLERTGYRRELE 520 Query: 519 SRFGNE---VIDVLDEFLNFTLRN------------EQNSYSSLQELISELEQYPPTIKR 563 S + +D L+E ++ + L + LE+ Sbjct: 521 SSTDPQELARLDNLNELVSVAHEFSTDLANAAEPEPDAEDVPDTGMLAAFLERVSLVADT 580 Query: 564 AHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 H V +MT+HTAKGLE PVVF+ +F H Sbjct: 581 DDIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPT------------- 627 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 E RL YVG+TRA +L + + S+ + Sbjct: 628 ---------------------ELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPE 666 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + +++ S + A + T Sbjct: 667 SRFLREIPQELLNWRRLAPKPSFSAPVSGAGRFGTARSAP 706 >gi|293373822|ref|ZP_06620166.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f] gi|298481100|ref|ZP_06999294.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22] gi|292631221|gb|EFF49855.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f] gi|298272674|gb|EFI14241.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22] Length = 792 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 100/677 (14%), Positives = 212/677 (31%), Gaps = 125/677 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y + ++ +DF+DL++ T L + + + + ++L+D Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L +I Sbjct: 229 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E + S Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R I IKD++A Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KRSIPYKIYGGLSFYQRKEIKDVIA 402 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + +++ + + Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I I + ++ T I+ E + ++E Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + ++ +MTVH+AKGLE Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 581 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D + ++ + Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVHYLQLPHEAGVSRAVD 667 Query: 707 DEWIAYEWSTH----HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 + + + + E+ + + S + ++ + ++PS+ Sbjct: 668 EGAGRFRREIEGGFTRSASPSRAPFGSTSSEQRERPKAQIIASSVPRNLKKVSTVSPSSG 727 Query: 763 DTKGKTNLESLLSDNQT 779 + S+ Sbjct: 728 AQATSSTSPSVAGVQAG 744 >gi|291556731|emb|CBL33848.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Eubacterium siraeum V10Sc8a] Length = 1235 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 153/978 (15%), Positives = 305/978 (31%), Gaps = 180/978 (18%) Query: 85 ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------------YKMFKSTLASLTLAK 131 +E + ++ +K ++ I +++ K + A L Sbjct: 285 FPKERAPQDRSAEKLVKAHREAVKSIFEKYFIKTCDKITSFGSDMAKSLPAVTALKNLVL 344 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y K++ DF D +L + + + + I++DE QD++ + Sbjct: 345 CFDKAYSAEKQRRNCADFSDAERGVYRMLCENGEKV----RERADFSLIIVDEFQDSNRL 400 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E+ + LTE+ + L+ VGD KQSIY F GA+P + Sbjct: 401 QYEIFKMLTEN----------KQGLYFVGDIKQSIYGFRGAQPSVFSAICK--------- 441 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 F + L +FRS ++ ++ +F + D R L Sbjct: 442 SDDFDKLPLNENFRSNRCVIDGINTLFDRMMTEENGGVDYAENGR-------------LI 488 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + DS + + ++ ++++ A IA I+ MI + K R Sbjct: 489 CGLEKDSDSPISDEDKTEVCIVSEKDRKNAVVTEAAYIAARINQMIAQGYKVGSDK-RPC 547 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +++R K+ I L + ++V N R +L D I+ +++L + I Sbjct: 548 TEDDFAIIMRSPKN--RIADYVNVLTAN-GLNVTYNQRAVLLDRPEIRLMLSLLKVINDP 604 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI--------------------------------CTQ 459 +D +L SPL+ F+ DD+ ++ + Sbjct: 605 YNDTELAKVLMSPLYCFTADDMARLRTGTFGFDISKIRAECADELEKYCLGTKEIVGMKR 664 Query: 460 RHETETVYEYIQKFANCGISKFQH-------------VIKYIHELIHIAQFCSPHDFFTL 506 + V + ++ + K + + + A SP + Sbjct: 665 KPLYSCVMQAVRGYDTSEYEKLHELTKDIKPDAKCAVFVNNLDSFRNAATASSPQELIRN 724 Query: 507 ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRA 564 I + + L+ +++ +L +LI LE Sbjct: 725 IYDRISADELLSVGDDPATRQANLELLVSYAREYSDYKDGGTLGDLIFNLENMSSLTAAQ 784 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + H V+IM+ H +KGL+ PVVF+ + S ++ + I Sbjct: 785 TAGGHG-VKIMSTHMSKGLQFPVVFVANCASLFNPDDYMGDVVISEEYAVASKSVDISTM 843 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------------SN 672 SK ++ + +KK + E RLLYV TRA ++LI + + Sbjct: 844 SKIQSPAYHAAAQEVKKQLESEEMRLLYVAATRAENKLIFTANISKACDEYMSLLDVNRT 903 Query: 673 EKKSNQRTWYDMVYDSFH-----------------NDERVKKIKLTNSINKDEW------ 709 KK + + + + V+ I + DE Sbjct: 904 GKKVGKCSGSSYLSWLIEALSAECDKVNDMQSGIIDYGDVRYIFYPLAYEGDEHSLTIPA 963 Query: 710 --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + + ++ + + ++ KKL + + + + Sbjct: 964 LNTGAENADEYTDDKNNDSTDIAVDEQFRSELEKKLNAAYTYEPLTKISAKFTATELAAN 1023 Query: 768 TNLESLLS------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809 ++ RG HKL++ I Sbjct: 1024 LREKNGEENYGLFIGKPSFLTENNTGKLSGKRRGDAYHKLMEHIPFEKILSEDEISDYIK 1083 Query: 810 TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD----SYSEVSVSGKIN-------- 856 A E ++ I N + + D Y E + +++ Sbjct: 1084 NSTAGFLDKAEQNSIDAGDIAGFYGNDVAKRIVKADKNGKLYREYPIFHRLDTQCYDPAI 1143 Query: 857 --------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 + + G D I I + +YKT + + + QL IY+ Sbjct: 1144 FGADSREMLEGAEPYVQGIADMFFIEDDGIVLVDYKTDKT--DDEQKYKDDYKLQLDIYK 1201 Query: 909 KILKDSYPNKSLVCLLIY 926 + L+ + + ++IY Sbjct: 1202 EALEKEFSV-PVKQMIIY 1218 >gi|169343377|ref|ZP_02864381.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str. JGS1495] gi|169298463|gb|EDS80549.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str. JGS1495] Length = 1271 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 124/645 (19%), Positives = 224/645 (34%), Gaps = 55/645 (8%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F L S + T+ + +S + E L+ + E KM+ Sbjct: 279 ASFGRLKSVRKASVDDEKALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178 L + Y + K++ +LDF DL ++L +D + + + Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDRFE 398 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P+ L Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDIKQSIYKFRQANPELFL 451 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296 + ++ I L +FRS +I+ V+ +F + L D + Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343 +S E + + + E + + S Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSNEDELGEEEEDLDSIQ 567 Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR I I ++ + GK R I+ KDI++L+R K+ Sbjct: 568 LEARIIGKKIKELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ + Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684 Query: 457 CTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + Y + + K ++ + Y+++ A + +F + Sbjct: 685 RLLNRDKYFFEIIKEVVDGTYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E S+ L I+ + Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + K + K + E R+LYV TRA ++LII Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGA 909 Score = 115 bits (286), Expect = 5e-23, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 19/187 (10%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144 Query: 829 TRLLENPMMTTAM-----SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + + Y E+ +I ++ + + G ID Sbjct: 1145 QKFFKSDLGQRMLNSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + +YKT + E E + Q+++Y+ L + L + Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILVEEVKEAYLYSFYLER 1264 Query: 932 VFIIPQN 938 I + Sbjct: 1265 ELKISKE 1271 >gi|161507067|ref|YP_001577021.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571] gi|160348056|gb|ABX26730.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571] Length = 748 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 120/692 (17%), Positives = 215/692 (31%), Gaps = 135/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + QV+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMREREQKLLGPAAQNIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 90 FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILSAISNG 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D ++ +A + Y+ +++ ++DF+DLI+ T L KK + Sbjct: 150 KNDLLD--PKAFAASASSPFDKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +IL+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 208 ---LHYYQNKFRYILVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ + +K ++L ++RST IL+ + V +N + Sbjct: 255 YGWRGANMENIMNFESDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + ++ + A Sbjct: 309 KN---------------------LW-------TDQGEGAKVTYYQAQSGDDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + + KD +L R + + I Sbjct: 334 HYIISKIKEEVEA---------KKRTYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET- 465 D IKD+MA + + + D +S ++ P + K+ E Sbjct: 381 VGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPKRGIGAATVDKLLAFADENHYN 440 Query: 466 -----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + K + + I AQ IL + + Sbjct: 441 ALDAMDHVAESPINTRTAKKLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSSLQE---LISELEQ-YPPTIKRAHSANHNEVR 573 E + LDEFL+ T R + + E L L + + + + N+V Sbjct: 501 NTIEAETRLENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F + Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEDGLFPLQ-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + EE RL YVG+TRA +L + Sbjct: 589 --RAMMDDNELEEERRLAYVGITRAKKELYLT 618 >gi|212696136|ref|ZP_03304264.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM 7454] gi|212676765|gb|EEB36372.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM 7454] Length = 730 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 102/616 (16%), Positives = 204/616 (33%), Gaps = 118/616 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + +YE+ K + LDF+DLI+ T DL + ++ +DE QDT+ Q Sbjct: 171 IYKNYEKKKFEYNSLDFDDLILKTLDLFASDP---NTLKYYQNKFEYVYVDEYQDTNKSQ 227 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +E+I+++ + VGD QSIYSF GA+ +L ++ + Sbjct: 228 YELIKAI----------GKLHNNITVVGDADQSIYSFRGADINNILDFEKDFKN------ 271 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I+L ++RST++I+ V +K+ + + LW Sbjct: 272 --AKTIKLEQNYRSTSNIINVANKLIRNNTERKDKN---------------------LW- 307 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 SQ + + + + + + I++++ + Sbjct: 308 ------TSQNDGSEVLYKKSSVESEEG-------KFVIDEINSLLNDG----------YK 344 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KD+ +L R + + D D IKDL++ + +++ + Sbjct: 345 LKDMAILYRMNAQSRIFEEYLMKNLLD----YKVVGGLKFYDRKEIKDLISYLKVLVNPK 400 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVI 485 DD+S ++ P I + + E + + Sbjct: 401 DDISLKRIINEPKKGIGNKTIENLEKEASKLGFSLTELVCDPSLFSNLPTKLKTSCEKFY 460 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 + E+ + D +L + + E ID L+EF++ E N Sbjct: 461 NPLSEIFDNYEDYKIVDLIEEVLDKSGYIKALEESYSVENRSRIDNLNEFISSAAEYESN 520 Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + + LE + + + +MT+H+AKGLE V F+V +F K Sbjct: 521 NPED--NIHDYLENLSLLSDLDKTEESDDSISLMTIHSAKGLEFKVCFVVGMDDGLFPSK 578 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA ++ Sbjct: 579 RSID-----------------------------------EGNIEEERRLCYVAITRAMEK 603 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L + ++ + + + +++ + K + + E Sbjct: 604 LYLSSAEIRRQFGQAVYYKPSRFLSEIKSSIKQIDQDKTPAYSPYVKMRSNEAYMRDKAR 663 Query: 722 TPLEREETIKQLMDEQ 737 + ++ T+K+ E+ Sbjct: 664 ESVLKKNTVKESSKEE 679 >gi|306827259|ref|ZP_07460546.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782] gi|304430406|gb|EFM33428.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782] Length = 772 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L D + + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++I+ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L S D +L + E I+ ++EFL+ T Sbjct: 457 MDLANSLGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + K + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + E T + L ++ + + + + P Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710 >gi|119493842|ref|ZP_01624409.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106] gi|119452434|gb|EAW33623.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106] Length = 784 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 107/622 (17%), Positives = 208/622 (33%), Gaps = 103/622 (16%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 + S F + + K I+T+E+N + + K + + ++ + + ++ Sbjct: 142 QWQQNFSIFDESDAQSLVKQIVTKELNLDDKKFEPR--KVRYQISNAKNLGLSPQAYQRE 199 Query: 124 LASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + + Y++ N LDF+DLI +L ++ + + Q+ NHIL Sbjct: 200 NPEYYGRVISEVYGKYQDRLAANNALDFDDLIRVPVELFQQNE---QVLAYWHQKFNHIL 256 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 +DE QDT+ Q+++IR L + ++ + R++F VGD QSIYSF A+ +L Sbjct: 257 VDEYQDTNRTQYDLIRLLVTNGEHPRSFKNWKNRSIFVVGDVDQSIYSFRMADYTILLEF 316 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + + ++I+L ++RS +IL V +++ R + Sbjct: 317 QQDFGDGLADDDTR-TMIKLEDNYRSRENILEVANQLILNNTTRIEKV--------LRPT 367 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 R Q + + A I I N+ Sbjct: 368 RGEGPPV---------------------------YCYQADNEAAEASFIVTQIKNLTEQ- 399 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + +L R + + I D IKD Sbjct: 400 -------HPELGYGSFALLYRVNAQSRALEDAF----IKSNILYKVVGGLKFYDRKEIKD 448 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------F 473 ++ R I + D +S + ++ +P + I + + ++E + Sbjct: 449 AISYLRMIANPADSVSLMRIINTPRRGIGKTTIDNLVNASQQLGVPLWEIVSDQDSVNTI 508 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLD 530 A + I A + + ++ ++ +E + + Sbjct: 509 AGRSAKAVNQFAQMISSWQEKAASSTALEILEGVMEDSDYILDLSNQSTDEAESRLENIK 568 Query: 531 EFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 E N + +++ S L ++ V +MT+H+AKGLE P+VF Sbjct: 569 ELSNAVAQFQEDYEDSTLGGFLANASLASDLDN--LQEGEQAVSLMTLHSAKGLEFPIVF 626 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 LV +F + + EE R Sbjct: 627 LVGLEQGLFPNFRSLDDPLS----------------------------------LEEERR 652 Query: 650 LLYVGMTRASDQLIICKHSNTS 671 L YVG+TRA +QL + Sbjct: 653 LCYVGITRAQEQLFLSHARERR 674 >gi|296454009|ref|YP_003661152.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] gi|296183440|gb|ADH00322.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] Length = 897 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 117/727 (16%), Positives = 222/727 (30%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L+ + Sbjct: 75 AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123 L T+ K + I + DLK L ++ F F + Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGRISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A YE +DF+DLI T +LL+ + +IL+D Sbjct: 189 DDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L S P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V S E + Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + + A A+ +A I+ + Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + I D+ ++ R + + + + Sbjct: 383 HAEE---------GISYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471 IKD +A + +++ +DD++ +L P + + R + + + Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489 Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + + L A P + +L R + + Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTHAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 ++ L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +E RL YVG+TRA +L + + + S ++ + + + K+ + Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695 Query: 704 INKDEWI 710 + W Sbjct: 696 RMRANWE 702 >gi|116328207|ref|YP_797927.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330931|ref|YP_800649.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120951|gb|ABJ78994.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124620|gb|ABJ75891.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 730 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 107/572 (18%), Positives = 189/572 (33%), Gaps = 115/572 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + YE+ K N DF DLI T L +K + K + ++++DE QDT+ Sbjct: 169 VSAIYKEYEKRKDANRAFDFGDLIWKTVQLFQKSPDAI---AKYRHKWEYVMVDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q++++ L + R L VGD+ QSIYS+ GA+ +L ++ + Sbjct: 226 KVQYQLVLLLAGE----------KRNLCVVGDDDQSIYSWRGADIGNILNFEKDFPES-- 273 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++I+L ++RS+++I+ KV S + + + V Sbjct: 274 ------TVIKLEENYRSSSNIILAASKVISNNTQRKQKEIFTNNP---------KGSPVV 318 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L + + S A + I + T Sbjct: 319 L--------------------------NEFENESEEAHGVITRIRSAYSYGT-------- 344 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + K+I + R + R L I F D IKD +A + Sbjct: 345 --EYKNIAIFYRTNSQSRYFEEALRNL----GIPYKIFGGFRFFDRAEIKDFIAYLSVVS 398 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKF----QHV 484 + D +S + ++ P + I KI + ++ E + + + + Sbjct: 399 NPLDSVSLLRIVNYPPRGIGDSGIGKIREFSLEKGISLLEALGQEDIPLKKAAKSKGKEL 458 Query: 485 IKYIHELIHIA-QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 +LI + SP + +L E ++ L E +N E Sbjct: 459 YSLFSDLIEKVEKSSSPSEIALELLNRSGLVSHLRDEGTEESIARLENLQELVNSIEEYE 518 Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + SL+E ++++ + V +MTVH AKGLE +VFL F Sbjct: 519 KNSDSPSLEEYLNQISLITSEE--ESKELTDYVNLMTVHNAKGLEFKIVFLSGLEEGTFP 576 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H + EE RL YV +TRA Sbjct: 577 HSMSLEDSHFGD---------------------------------EEERRLFYVALTRAR 603 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 +QL + + K R + + Sbjct: 604 EQLFLSYCRTSRKFGKVEDRIPSRFLSEIPEE 635 >gi|328951963|ref|YP_004369297.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] gi|328452287|gb|AEB08116.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] Length = 1137 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 153/939 (16%), Positives = 319/939 (33%), Gaps = 80/939 (8%) Query: 27 QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT-----PQ 81 + + + + G +++ +A + + + ++ LT++ + P Sbjct: 249 LGRNWSAFYRYLADAGAGLADDLPESIPEAQVSALPD--WGKIARGLLTKEGSCYRTFPA 306 Query: 82 KNIITQEINKK-----SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 ++ +++ + +L E L + + + L Sbjct: 307 RSGFPKKMRESVWGGLLQNLPETLVPQLRRLKEQPSILLQPDEVPAVQDLIILLNQALTA 366 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 YEE + VLDF L +LL +++ + +++D+ ++H+L+DE QDTS Q E++ Sbjct: 367 YEELCQTRRVLDFSALEQAALNLLSDKNIPD-LLWRLDRRLSHLLVDEFQDTSARQMELL 425 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 L + R+L VGD KQSIY + A + + +R ++ F+ Sbjct: 426 CRLLTGWSGDLG-----RSLMVVGDPKQSIYGWRQARVELFFQTRRQ-KRLPCPEAPPFT 479 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 + L +FRST+ ++ V+ VF + G+ V+ E V Sbjct: 480 TLTLSTNFRSTSTLIQWVNNVFGQ-----------------TIMKAGERNGVEFSEAVAK 522 Query: 317 QHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 Q +P Q + + D L ++ A+ LAR+++ + N+ ++ Sbjct: 523 PDAKQGDPPQLALFTAADRSLGRKQEANWLARQVSLKVKNIAAGES-------------- 568 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I +L+ R+ P + +S+ + L D LA++ L ++ DD+ Sbjct: 569 IGILLFTRRQLPAYLLA----CQNAGLSLRVREGLALYDSLAVQHLHNAVTALVHPHDDI 624 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495 ++ +L+ + ++ + E + +N ++ + + E + Sbjct: 625 AWAGLLQGFAGPQPLGFLAQVADYQEEFWSKKLEACAVSNDCPAEVRQWWRVCAEAGKMV 684 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN-FTLRNEQNSYSSLQELISEL 554 H+ L G ++ + G + +L+ ++L L L Sbjct: 685 GRAPLHEILAEWLSTAGGWERIAAWEGAAGVANARVYLDLLATAASCTPEATLARLTDLL 744 Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 Q A + V ++TVH AKGLE VFL Q +M + Sbjct: 745 TQA--FQPADPRAKDSPVEVLTVHAAKGLEFDHVFLPSGDWQPLLTGKSDTPFLMEETSS 802 Query: 615 DPGIPI---WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 G I K ++ + L K+ E RL YV +TRA L I T Sbjct: 803 AGGAVIALNCAYAGKEQSLLYHTLRDLAKQRLLSEARRLFYVAVTRAKKSLQISGVIKTD 862 Query: 672 NEKK--SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729 + + + + E K ++ + T + Sbjct: 863 KAGNCQFPANSPLGWLRQHYPDGELYPGQKSIWQPPPLPVSVFQEISELLLPTGETKTPP 922 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789 + + + +P K+ P + +E + + + RG IIH+L Sbjct: 923 LPYDLQPELLPYKMQFPSQLSGSEANNDS-DQSNRFTSDEDTAGEEITLARLRGEIIHRL 981 Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSITRLLENPMMTTAMSCD--- 844 L+ + + S +L + ++P + + + Sbjct: 982 LETLSRGVPLPEPAAVASVLRSAGVSAEYALDLADEMLAEVKACRDDPFLAPLLDANLPV 1041 Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV-----PQEIEHIPYT 899 SE V I GR+D++ ++ +YKT + Sbjct: 1042 VRSEWLVEA---WQDSATIRRGRLDRLVFDGYQWWLLDYKTSRPPVGIDWETFLASETDA 1098 Query: 900 HIAQLSIYEKILKDSY---PNKSLVCLLIYVSEPKVFII 935 + QL Y ++ + + + +L + + + + Sbjct: 1099 YRPQLLAYRELAARFFQLASPEMIQPVLYFTANRRHIFL 1137 >gi|297588238|ref|ZP_06946881.1| ATP-dependent DNA helicase PcrA [Finegoldia magna ATCC 53516] gi|297573611|gb|EFH92332.1| ATP-dependent DNA helicase PcrA [Finegoldia magna ATCC 53516] Length = 724 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 103/577 (17%), Positives = 186/577 (32%), Gaps = 122/577 (21%) Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ T L YE K+ LDF+DLI+ TN L ++ Sbjct: 144 RLKNAGATEKNIDKEDFDISLSTFTMELFQKYEHKLKRYNSLDFDDLIVKTNLLFEENPD 203 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R K + ++ +DE QDT+ Q+E+I++L S + VGD QS Sbjct: 204 ---LREKYSERFKYVFVDEYQDTNDTQYELIKNLV----------SKNDNICCVGDSDQS 250 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY + GA + + ++ + +I L ++RST IL + + V + Sbjct: 251 IYGWRGANIQNIQNFEKDFKN--------AKVILLEQNYRSTQPILDLANTVIKNNSLRK 302 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + LW ++++ + ++ + Sbjct: 303 DKN---------------------LW---TAKNEGDMPIYRRMYSDIDE----------- 327 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A ++ I + R +++ +L R + L L I Sbjct: 328 AEQVVQWIEQ----------ERYRQNPYEEMAILYRTNAQSRLFEERLNRL----GIPNR 373 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464 D IKD ++ R + + D+++ ++ P + + K + + Sbjct: 374 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQSRGI 433 Query: 465 TVYEYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518 ++ EYI+ F+N K Q I + + IL R Sbjct: 434 SMMEYIKNTDLPDFSNATAKKLQEFYYLIKSFPK--DEMNVAELMEYILDKTGYRANLEK 491 Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIM 575 +R ++ +DE+++ + Q++ + L LE N V +M Sbjct: 492 SNNRDDKTRLENIDEYISSLYQFVQDNPD--KNLREYLETSSLMTDLDKTDDNTKGVSMM 549 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE VVF + Sbjct: 550 TIHAAKGLEFDVVFFTGLEEGTIPSR---------------------------------- 575 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 EE RL YV +TRA +L I + Sbjct: 576 ----IDEDVEEERRLCYVAITRARKKLYITSVQSRRR 608 >gi|213692487|ref|YP_002323073.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523948|gb|ACJ52695.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458632|dbj|BAJ69253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 897 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 117/727 (16%), Positives = 221/727 (30%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L+ + Sbjct: 75 AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123 L T+ K + I DLK L ++ F F + Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A YE +DF+DLI T +LL+ + +IL+D Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L S P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V S E + Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + + A A+ +A I+ + Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + I D+ ++ R + + + + Sbjct: 383 HAEE---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471 IKD +A + +++ +DD++ +L P + + R + + + Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489 Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + + L A P + +L R + + Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTHAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 ++ L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +E RL YVG+TRA +L + + + S ++ + + + K+ + Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695 Query: 704 INKDEWI 710 + W Sbjct: 696 RMRANWE 702 >gi|163790443|ref|ZP_02184874.1| exonuclease RexA [Carnobacterium sp. AT7] gi|159874347|gb|EDP68420.1| exonuclease RexA [Carnobacterium sp. AT7] Length = 1267 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 109/626 (17%), Positives = 209/626 (33%), Gaps = 43/626 (6%) Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134 T + + + + + + ++L + + Sbjct: 302 TDEAIKETAEEMKLLRDQYKNRFKELTNDYFSASPQEQIDLMLNAAPLVEEMARVTQLFT 361 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSL 190 Y + K + +LDF DL T +L + W+ + +++DE QD + Sbjct: 362 DAYRQRKDERNLLDFNDLEHLTLQILAQFKKQDWVPTEASMHYRDKFKEVMVDEYQDINQ 421 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q ++R L D S LF VGD KQSIYSF A+P L++ Sbjct: 422 LQENILRWLAHD-------QSDQGNLFMVGDVKQSIYSFRLADPGLFLKKYEQY-----G 469 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 Q I L +FRS ++L + +F + D + G + Sbjct: 470 HHQSGERIILAENFRSRGEVLQFTNLIFEQLMDKAVGQMDYDEAAQLVQGFSGFPALQKH 529 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR--RIAYTISNMIGTDTIFSNGK- 367 +++ + +++S + + + I +I T + + Sbjct: 530 HPELLIYEKGTTDSEEDSEETESVNWDMRIEDKTEGELLMVGQKIQELIQTQFPIYDKRS 589 Query: 368 --KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 R I+ KDI++L +K+ + + I + ND I +M+L Sbjct: 590 KTTRPIRYKDIVLLTPTKKN----NLVLMEMFKRLSIPLQVNDTQNYFQTTEITIMMSLL 645 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV------------YEYIQKF 473 + I + D+ +L+SP+ E+++ I + + E +F Sbjct: 646 KVIDNPYQDIPLAAVLRSPIVGLDENELASIRISQKTGDYYDALKTFYQTYPGIEKASRF 705 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEF 532 K ++ +++ +A+ I G + L Sbjct: 706 TTNLYGKIDVLLTRLNKWRELARRDHLVALIWAIYDDTGFLDYVGGMNSGKQRKANLHAL 765 Query: 533 LNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 E+ S+ L + + +E+ A S + + VR+MT+H +KGLE PV Sbjct: 766 YERAASYEKTSFKGLFQFVRFIEKMQEKDKDLAEPTAISEDEDAVRVMTIHASKGLEFPV 825 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF++D + K + + + + L K E Sbjct: 826 VFVLDLTKKFNLQDIKKSYVFNEQYGVGTDYKDLERRIRYPSLPETALKVEKKTKLLSEE 885 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNE 673 R LYV +TRA ++L + Sbjct: 886 MRKLYVALTRAEEKLFLVGSYKNEEA 911 Score = 120 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 17/205 (8%) Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITS 807 D+++P N D+ + + L+ G H ++Q + T P + + + Sbjct: 1063 DVSQPRNRNRYVEDSLDRPLFMTELTVPSNAEIGTATHSVMQAVDLATKPTKESLEALIA 1122 Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP------- 858 K L K + + + P+ + S + + E S + Sbjct: 1123 SLIKAGVLKEEVASKVNVGQLVQFFATPLGNMILDYSKEVHREEPFSLLLEAEKIFTDMN 1182 Query: 859 ---KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH---IPYTHIAQLSIYEKILK 912 + I+I G ID + +I +F+YKT + + + Q+++Y L+ Sbjct: 1183 GDAEDKILIHGIIDGYIELEDHIILFDYKTDRVSHYGAQAGKNMLEKYKGQMNLYRSALE 1242 Query: 913 DSYPNKSLVCLLIYVSEPKVFIIPQ 937 K L + ++ +PQ Sbjct: 1243 SILNKKVTEAYLCLLETGEIIPVPQ 1267 >gi|257064330|ref|YP_003144002.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM 20476] gi|256791983|gb|ACV22653.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM 20476] Length = 772 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 97/711 (13%), Positives = 207/711 (29%), Gaps = 157/711 (22%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L Y+ + V + ++ L S Sbjct: 27 GAGSGKTRVLTYRIAHMVQDLNVPPWQIMAITFTNKAANEMRERLGRLVGPSARGMWVST 86 Query: 66 FSLL---------SSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110 F + ++ FT + T+ + K + + + + + Sbjct: 87 FHSMCVRILRVDCELLGFSKSFTIYDDDDTKRLLKDVMAGLDLDPKRWPVNSIRGKISQA 146 Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ ++ ++ + + A Y+E K DF+DL++ T L K Sbjct: 147 KNELKAPGVYADEARDPVSKVTARVYAVYQERLKMANAFDFDDLLMYTYLLFKNHPD--- 203 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++L+DE QDT+ Q+ + + L + + VGD+ QSIYS Sbjct: 204 VLEAYQDRFRYLLVDEYQDTNHAQYAITKLLAA----------KHQNIMVVGDDDQSIYS 253 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ + I+L ++RS+ +IL + V + + Sbjct: 254 WRGADIRNILEFEQDYPQ--------ARSIKLEQNYRSSGNILNAANAVVAHNTKRKQKR 305 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 + ++ D + R Sbjct: 306 LF----------------------------TESGDGEKILVYMASDERDEG-------RW 330 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 IA I + + +++ V R + + + + Sbjct: 331 IAGEIDKLHNEG----------VSYEEMAVFYRTNAQSRSLEDML----LRAGVPYRIVG 376 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D I+D++A ++ DD++ ++ P + I I R+ T Sbjct: 377 GTKFFDRAEIRDVIAYLTLCINPADDMAAKRVINQPRRGIGKTTIEHIENVARNSNLTFM 436 Query: 468 E------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + + + I++ + ++ + Q Sbjct: 437 QAAEWCLADETLQMRTRNAIGGFVGLIND--AQSYGGELRKVIEAVIDRSQLIQALEQER 494 Query: 522 GNEVI---DVLDEFLNFTLRNEQNS----------------------YSSLQELISELEQ 556 +E + + EFL+ ++ SL++ + + Sbjct: 495 TDEAESRIENIKEFLSVVDEYVESHEIDESALPPEGINLLADTRQLSPDSLEDFLEWVRL 554 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 V +MTVH++KGLE VF+ +F H + + Sbjct: 555 RTDLDAATDDDQ--FVTLMTVHSSKGLEFDCVFVAGMEETLFPHSNSSRDP--------- 603 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 EE RL YV +TRA +L + Sbjct: 604 -------------------------QGLEEERRLAYVAITRARKRLYLTCA 629 >gi|116621025|ref|YP_823181.1| DNA helicase/exodeoxyribonuclease V subunit A [Candidatus Solibacter usitatus Ellin6076] gi|116224187|gb|ABJ82896.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Solibacter usitatus Ellin6076] Length = 1045 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 163/944 (17%), Positives = 286/944 (30%), Gaps = 141/944 (14%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 F + + + I L + +S N +E T L+ A+ + A + E Sbjct: 181 FPVPPGVTVDEINDTLNAIRRESLSGWNHQQKEHLE----TALEGAERIVGA---ESPIE 233 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 + F + T LK+ +++ T Sbjct: 234 ALRAIERFSCNLTKCKRGTNTT-----------NLLKRMREQIEGAEYALITALYAPQRE 282 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 + + + + Y + K++ LDF DL T LL++ + R ++ ++ +HIL+DE Sbjct: 283 LLIEILRRFDRLYRDRKRQGAALDFSDLEEFTVRLLEEHHET---RARLQRQFDHILMDE 339 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ Q ++I + P +AVGD QSI+ F AEP+ R + Sbjct: 340 FQDTNGQQAKLIELI-----------RPPDRFYAVGDINQSIFGFRHAEPQGFARYRDEI 388 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 +++L +FRS A+IL+ V + G Sbjct: 389 AT------GDRHLVQLVDNFRSRAEILSAV-----------------------ETLTAGA 419 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 G + D E + +I A+ +A I + G + Sbjct: 420 KGIEDRALVAGRRFDDAPEHSVEVIAAP--------ETAIEAQWVARRIMELSGPEP--- 468 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 Q KD VLVR + P T I + N + DL L Sbjct: 469 -------QFKDFAVLVRNTEVIPEFTDAFDA----AGIPYLVNRGRGFYASREVNDLTHL 517 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 R I + D++S +L+SPL N S + + ++ + + Q Sbjct: 518 LRAIANPRDEISLAVVLRSPLVNASVEALLRLKMNGENLGAALQRSEDAL------LQRF 571 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544 +HE ++ + + +D+FL Sbjct: 572 GARLHEWRGRREYVTFDRLLLEAIDDCGY----------PASGNVDKFLAQARDAASR-- 619 Query: 545 SSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 SL E + EL Q R A N V+IMTVH+AKGLE PVVF+ V Sbjct: 620 MSLDEFVMELAQVREENPREPDAPPEDSANAVKIMTVHSAKGLEFPVVFVAAIHKGV--D 677 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + + L + K+ +EE NRL YV MTRA Sbjct: 678 TGVPAVAFSRHYGLGARWRNPASGQDKDDLFQHALRREWKQREEEESNRLFYVAMTRAEQ 737 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS--------INKDEWIAY 712 +LI+ + + + ++ + + + KI + Sbjct: 738 RLILS-FTAAARKPQNWDKLVMERLRIEPGTPGDAVKIFEAPDGKQWKARILIAQAAPEL 796 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 P + + ++ + + + +G+ S Sbjct: 797 LTRERTPNEEITVQFAVPPVVEEQHDSNATVTALALFAGCPRKYYLNRYLGFEGRAARRS 856 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 + G +H LL A P E L + Sbjct: 857 EGAALDAGEFGTQVHALL-------------------AGTAVASPDPEAVRLAE----VF 893 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 + E D +I G++D + + +YKT E Sbjct: 894 RQSPLGRRAENAVRIEREF--DFLLAIADQVIVGQVDLWFEENGELLVVDYKTDTVSASE 951 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 H + QL +Y ++ + ++ + Sbjct: 952 ASHRARDYGLQLRLYALAIERMTGRAPDRGFVHFLRPNVAIEVD 995 >gi|19746195|ref|NP_607331.1| DNA helicase II [Streptococcus pyogenes MGAS8232] gi|19748377|gb|AAL97830.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS8232] Length = 772 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 115/650 (17%), Positives = 205/650 (31%), Gaps = 123/650 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L D + + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L S D +L + E I+ ++EFL+ T Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T A+ V +MT+H AKGLE PVVF Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEASE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + K + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + E T + L ++ + + + + P Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710 >gi|260102795|ref|ZP_05753032.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM 20075] gi|260083399|gb|EEW67519.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM 20075] Length = 748 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 120/692 (17%), Positives = 215/692 (31%), Gaps = 135/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + QV+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMREREQKLLGPAAQNIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 90 FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILSAISNG 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D ++ +A + Y+ +++ ++DF+DLI+ T L KK + Sbjct: 150 KNDLLD--PKAFAASASSPFDKMAAKIYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET 207 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + +IL+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 208 ---LHYYQNKFRYILVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ + +K ++L ++RST IL+ + V +N + Sbjct: 255 YGWRGANMENIMNFESDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + ++ + A Sbjct: 309 KN---------------------LW-------TDQGEGAKVTYYQAQSGDDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + + KD +L R + + I Sbjct: 334 HYIISKIKEEVEA---------KKRTYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET- 465 D IKD+MA + + + D +S ++ P + K+ E Sbjct: 381 VGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPKRGIGAATVDKLLAFADENHYN 440 Query: 466 -----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + K + + I AQ IL + + Sbjct: 441 ALDAMDHVAESPINTRTAKKLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAE 500 Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSSLQE---LISELEQ-YPPTIKRAHSANHNEVR 573 E + LDEFL+ T R + + E L L + + + + N+V Sbjct: 501 NTIEAETRLENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F + Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEDGLFPLQ-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + EE RL YVG+TRA +L + Sbjct: 589 --RAMMDDNELEEERRLAYVGITRAKKELYLT 618 >gi|313900250|ref|ZP_07833746.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2] gi|312954959|gb|EFR36631.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2] Length = 1069 Score = 299 bits (765), Expect = 2e-78, Method: Composition-based stats. Identities = 150/895 (16%), Positives = 300/895 (33%), Gaps = 89/895 (9%) Query: 47 LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 L Q L QA Q Q + + + P + +E + L + Sbjct: 259 LLALQDLHQALQNQDYQAYRAAFLAIVHAVVP-PSPDKEDKEYARLRKSLLALEDAQLEI 317 Query: 107 FIKIRDRFNTYK-MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 + + ++ + + + + Y K+K+ V+DF+D+ ++L+ + Sbjct: 318 LFSEDEFMRDIRYLYPYIKKLVDMCRDYRSAYARIKEKHKVIDFDDMEHFALEILQAKGG 377 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++ I++DE QD++ +Q +++ + +F VGD KQS Sbjct: 378 R--VADIYREKFVEIMVDEFQDSNDVQNQLVMLIC-----------RKNNVFRVGDIKQS 424 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F A+P + G +I L ++RS I+ + +F + N Sbjct: 425 IYGFRHAKPSLMKGLIDH-------RGVFDEVIYLSNNYRSKKMIVDFNNDLFKLLMNID 477 Query: 286 GLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 G S + V + V ++ + S + Sbjct: 478 GFSCSYAKEDDVETGVPAQNEDNVPICFHAVYHNEIKEAEGIIV-----------SKNEL 526 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 A IA I + + + KD +VLVR + + L I Sbjct: 527 KASYIANQILEIKEREQR---------KWKDFVVLVRGNARKDDMKKIFDEL----NIPY 573 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 + ++ A++ +++ + IL DD+SF + SPLF S D + Q+ + + Sbjct: 574 FIDIKYGFYQSNAVQVILSAMKCILHPHDDISFTATMLSPLFRKSTMDFAQAKLQKEKGQ 633 Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 + Y + + G + + ELI + + + + + Sbjct: 634 SYYSWFCEHPFPG-------FEILQELIFQHGRLRISELINKLYEMQDYYR---LHTSIQ 683 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAK 581 LD ++ E S L +S++EQ A + VR+M++H +K Sbjct: 684 EKTNLDLLFEKAVQFEDQYASGLSSFLSQIEQIKDAQTAEAIPIGAEADVVRVMSIHQSK 743 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GL+ PVVFL T Q + L + + K Sbjct: 744 GLQFPVVFLWSTDKQT-PIEFKDFCISDSELGLAMKAMDLPQRYVRTTIPRIAMEHKKDK 802 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 EE R+LYV TRA Q+ I + K + + + + Sbjct: 803 EELEEEMRILYVATTRAQTQMHIVDCILELDTYKHPLSMSQVYNRNGYTSWILQTFLCNP 862 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761 + + + + W E + + P K+ L ++ Sbjct: 863 SPLFTVKEVHRLW-----------HSEVQQAEAGIYHPFRVYEKPSKSIE-----LVTAS 906 Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + + D Q + G ++HK+++ + ++ I + + Sbjct: 907 AQEARELPAFTFDDDMQGSDYGTMMHKMIEAL--QAPIWSRDVILQVANQQLVELKEWD- 963 Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881 + ++ +L ++P A D + E+ K I+ G +D +SI + I Sbjct: 964 ---IQTLLQLGKDPDYLLAYRGDVHHEMPFMVK----DGLQILHGYMDFVSIQNDRMIIL 1016 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 ++KT + QL++Y+K + YP S+ + + ++ I Sbjct: 1017 DFKTDSLKED--AEFIQRYKGQLAMYKKAMHILYPKHSITTCIYSLHLHRMIAIS 1069 >gi|254373504|ref|ZP_04988991.1| hypothetical protein FTCG_01457 [Francisella tularensis subsp. novicida GA99-3549] gi|151571229|gb|EDN36883.1| hypothetical protein FTCG_01457 [Francisella novicida GA99-3549] Length = 740 Score = 299 bits (765), Expect = 2e-78, Method: Composition-based stats. Identities = 125/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89 I ++ + + S F ++ L + Q ++ + I Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 N D K+ K FI + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL+++ +L +R + +ILIDE QDT+ +Q+ ++ L D Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 + AVGD+ QSIY + GA + + + II+L ++RST + Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 IL V + V +N +LW + + ++ Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVEL 317 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + A+ I I + + DI +L R + ++ Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416 Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + I + + + ++ S I+ I+ + S Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELINGISAQISQHSLDK 476 Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MT+H +KGLE VFLV VF I Sbjct: 537 AVLEAGD--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + + E RL YV +TRA L I + Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRNIF 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ + K + A Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFAAAKPKTKQKA 670 >gi|325956252|ref|YP_004286862.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC] gi|325332817|gb|ADZ06725.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC] gi|327183068|gb|AEA31515.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1118] Length = 748 Score = 299 bits (765), Expect = 2e-78, Method: Composition-based stats. Identities = 123/773 (15%), Positives = 242/773 (31%), Gaps = 138/773 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + QV+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAATEMREREQKLLGPAAENIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKS------PDLKEKL---------KKSQDEFIKI 110 F L L + I + +++ L + Sbjct: 90 FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGVLAAISNG 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + F++T +A + Y+ +++ ++DF+DLI+ T L KK + Sbjct: 150 KNDLLDPEAFETTASSPFEKMAAKIYKEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 208 -LHYYQNKFRYILVDEYQDTNEAQYQLCHALAAQY----------KNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + ++ + QK ++L ++RST IL+ + V +N + + Sbjct: 257 WRGANMENIMNFEHDYQKD------GVRTVKLEQNYRSTGHILSAANSVIKNNQNRKDKN 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW Q Q+ ++ + A Sbjct: 311 ---------------------LW-------TDQGEGQKVTYYQAQSGDDE-------AHY 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + K+ +L R + + I Sbjct: 336 IISKIQEEVKDKHR---------SYKNFAILYRTNAQSRTVEEAF----VKSNIPYQIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-- 466 D IKD+MA + + + D +S ++ +P + K+ T + Sbjct: 383 GHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADDNHYTVL 442 Query: 467 ----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + K + + I AQ S IL + Sbjct: 443 DAMDHVAESPISTRAAKKLSDFGAKLRDAIAYAQTSSVTGLTEKILEDFDYTDALKAENT 502 Query: 523 NE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E ++ LDEFL+ T R E++ + L + ++E+ N+V Sbjct: 503 IESETRLENLDEFLSVTKRFDDHYEPEEDDSNPLSDFLAEVSLLSDQDDLDED--DNQVA 560 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ +F + Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEDGLFPLQ-------------------------------- 588 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690 + + EE RL YVG+TRA +L + + + + + D + Sbjct: 589 --RSMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDSKDL 646 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 + E +K++ + + + ++ + Sbjct: 647 HKEENEKLEGSFIKSSFAATSAPFARKAERARATVYTAKKASGAVGAEKKGWS 699 >gi|322372977|ref|ZP_08047513.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150] gi|321278019|gb|EFX55088.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150] Length = 775 Score = 299 bits (765), Expect = 2e-78, Method: Composition-based stats. Identities = 107/645 (16%), Positives = 204/645 (31%), Gaps = 123/645 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L K + Q +I +DE QD Sbjct: 172 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + Sbjct: 277 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 311 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI+N++ + Sbjct: 312 --LW-------TQNDDGEQIVYYRANDERDE-------AVFVASTINNVVREEGK----- 350 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 351 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 402 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 403 IANPADNISFERVVNEPKRGVGPGTLEKIRTFAYEQDMSLLDASANIMLSPIKGKAAQGV 462 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I L S + +L + E I+ ++EF++ T Sbjct: 463 YDFANVILNLRDQLDDLSITEVVEAVLDQSGYLDALSMQQTLESQARIENIEEFMSVTKN 522 Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 ++ + L +++L T A V +MT+H AKGLE PVVF Sbjct: 523 FDETNTDETEDETGIDRLGRFLNDLALIADTDDGDVEAAE--VTLMTLHAAKGLEFPVVF 580 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + R Sbjct: 581 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 606 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + K+N + + + + + + + + Sbjct: 607 LAYVGITRAEEILFLTNANTRTLFGKTNYNRPSRFLREISDDLLQYQGLARPANSSFGVR 666 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 + T + L++ ++ + + K P Sbjct: 667 FTKDEPTQFGQGMSLQQALQTRKANAQPQRRTGAQPFSKATGGLP 711 >gi|325687804|gb|EGD29824.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72] Length = 762 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 98/590 (16%), Positives = 193/590 (32%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 168 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 224 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 225 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 272 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 273 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 307 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI+ + Sbjct: 308 --LW-------TQNEDGEEIVYYRAKDEKDE-------ALFVARTIAQLSREG------- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + + I+D+++ Sbjct: 345 ---YSYKDFAVLYRTSAQSRTVEEAL----LKGNMPYTMVGSTQFYSRKEIRDVISYLNL 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 398 IANPSDNISYERVVNEPKRGVGPGTVDKIRDFASSQEISLLDASANILLSPVKGKAAQAV 457 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + + +L ++ E I+ ++EFL+ T Sbjct: 458 YDFANMLLDLRERLDDYTVTELVEAVLEKTGYATALAAQATLESQARIENIEEFLSVTKN 517 Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 +++ S L +L L + + +EV +MT+H AKGLE PVVF++ Sbjct: 518 FDESSDNPADESGLDKLSRFLNDLALIADTDDVDQDSSEVTLMTLHAAKGLEFPVVFIIG 577 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F K K+ EE RL Y Sbjct: 578 MEENIFPFKWG----------------------------------ESKEKDLEEERRLAY 603 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + Sbjct: 604 VGITRAEKILYLTNANSRMLYGKTNCNQPTCFLREISSALLDYQGLARPE 653 >gi|15675225|ref|NP_269399.1| DNA helicase II [Streptococcus pyogenes M1 GAS] gi|21910437|ref|NP_664705.1| DNA helicase II [Streptococcus pyogenes MGAS315] gi|28896013|ref|NP_802363.1| DNA helicase II [Streptococcus pyogenes SSI-1] gi|71910790|ref|YP_282340.1| DNA helicase II [Streptococcus pyogenes MGAS5005] gi|94988710|ref|YP_596811.1| DNA helicase II [Streptococcus pyogenes MGAS9429] gi|94992533|ref|YP_600632.1| DNA helicase II [Streptococcus pyogenes MGAS2096] gi|13622394|gb|AAK34120.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS] gi|21904635|gb|AAM79508.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS315] gi|28811263|dbj|BAC64196.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1] gi|71853572|gb|AAZ51595.1| DNA helicase II [Streptococcus pyogenes MGAS5005] gi|94542218|gb|ABF32267.1| DNA helicase II [Streptococcus pyogenes MGAS9429] gi|94546041|gb|ABF36088.1| DNA helicase II [Streptococcus pyogenes MGAS2096] Length = 772 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L D + + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++I+ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L S D +L + E I+ ++EFL+ T Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + K + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + E T + L ++ + + + + P Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710 >gi|251782494|ref|YP_002996796.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391123|dbj|BAH81582.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127381|gb|ADX24678.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 772 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 118/679 (17%), Positives = 211/679 (31%), Gaps = 134/679 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDSNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------AQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMIGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESNQSLLEAASNLFMSPLKGKAAQAM 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +++L + S D +L + E I+ ++EFL+ T Sbjct: 457 TDLAGILNQLRQDLETMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T EV +MT+H AKGLE PVVF Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTD--DSQTEAAEVTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + + + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLNEISEELLSYQGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + + T + L ++ + ++ S+ T Sbjct: 661 FSTDKHTQFGQGMSLSEALQARKAQAQ----------VRQSPQPTQARTISSASTTSGLP 710 Query: 770 LESLLSDNQTF-NRGLIIH 787 S S + G I H Sbjct: 711 FGSNRSLEEVTWQIGDIAH 729 >gi|227889452|ref|ZP_04007257.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC 33200] gi|227849930|gb|EEJ60016.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC 33200] Length = 772 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 125/692 (18%), Positives = 214/692 (30%), Gaps = 135/692 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 54 GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 113 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110 F L L + I + L + +D Sbjct: 114 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 173 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K FK AS+ + + + Y+ K++ ++DF+DLI+ T L KK Sbjct: 174 KNDLLTPKDFKDQAASMFEKVTAQVYSEYQHRLKRDKIMDFDDLIMQTLVLFKKD---KE 230 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +IL+DE QDT+ Q+++ +L + + + VGD QSIY Sbjct: 231 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 280 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + Q + + I+L ++RST IL + V + Sbjct: 281 WRGANMENILNFEHDYQDD------EVTTIKLEQNYRSTGHILDAANSVIKNNLKRKPKK 334 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 335 ---------------------LW-------TDKGAGDKINYYRAQSGNDE-------ALF 359 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I I KD VL R + + I Sbjct: 360 IISKIKEEIEEHQR---------DYKDFAVLYRTNAQSRNVEEAL----VKANIPYRIVG 406 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 D IKD++A + + + D +SF ++ P + K ++ + E Sbjct: 407 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 466 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + I ++ IL ++ + Sbjct: 467 ETFKNLSLAPITGRPARTLATFGTALKDAIEYSKTHGVTGLTEKILADFGYKEALENEHT 526 Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + L+EFL T R E ++L + +SE+ N+V Sbjct: 527 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 584 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 585 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 612 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 S EE RL YVG+TRA +L I Sbjct: 613 --RAAEDPSELEEERRLAYVGITRAEKKLYIT 642 >gi|302874683|ref|YP_003843316.1| recombination helicase AddA [Clostridium cellulovorans 743B] gi|307690704|ref|ZP_07633150.1| recombination helicase AddA [Clostridium cellulovorans 743B] gi|302577540|gb|ADL51552.1| recombination helicase AddA [Clostridium cellulovorans 743B] Length = 1287 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 142/796 (17%), Positives = 288/796 (36%), Gaps = 67/796 (8%) Query: 87 QEINKKSPDLKEKLKK--SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 + + + + + + D+ I + F + + + ++E K+ Sbjct: 311 KNVRDQYKETISSIIEDFFYDDIEAINEEFRF--IAPIISILKEILISVIHTFKEKKRSK 368 Query: 145 CVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 ++DF D+ +LL K V + +I ++ I+IDE QD+S IQ E++ ++ Sbjct: 369 GIIDFNDMEHYVLELLCTKNDKDETVPTEVALEIRRKFEEIMIDEYQDSSFIQEEIMTTI 428 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 + +F VGD KQSIY F A+P+ L + ++ G + I Sbjct: 429 SRKDEAV-------PNMFMVGDVKQSIYKFRQAKPELFLEKYETYEEL---DGARNRKIL 478 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR------SSRIGQVGTVQLWEQ 313 L +FRS +IL + +F + + + T + + + + Sbjct: 479 LYKNFRSRKEILDGTNFIFKSIMSKELGELEYTDKEALNLGADYVTFEDESLTFAEPIDV 538 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD------TIFSNGK 367 ++ + S Q+ + L + + + A+ I I ++G + +F G Sbjct: 539 IIFEKPSGNIEIQKDTDEDAEDLEEINEFQMEAKIIGAEIKKIMGREAGYRRKKVFDKGS 598 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R ++ KDI++L+R T T + + +I V + D++ +K ++AL + Sbjct: 599 YRDVEYKDIVILLRS---TVNRTDVFLEELKNLEIPVYADSTSGFFDNIEVKTILALLQV 655 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN------CGISKF 481 I + + D+ + +L+SP+ FS+D++ I + + K Sbjct: 656 IDNPKQDIPLLAVLRSPIGGFSDDELIDIKISMDKEYCYFFDKLSNYCVVGSDNDLREKT 715 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540 + ++ +++ + S + + G + L + + E Sbjct: 716 KAFLRRLNDYRSKSLHLSLVELIWFLFTDTGYLAFVGTLPNGMQRQGNLRILFHRAKQYE 775 Query: 541 QNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 SY L I+ +E + N N VRIMT+H +KGLE PVVFL T Sbjct: 776 ATSYRGLFNFINFMEKMKNTSSDLGDAKLLGENDNVVRIMTIHKSKGLEFPVVFLASTSK 835 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + + + + + + + + + + +K E R+LYV + Sbjct: 836 RFNNRELNNEFLFHHNFGIGIKYTDFEKRISYSSILRNLIQEKMKIENYSEEMRVLYVAL 895 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++LII + + + + E L D+ + Sbjct: 896 TRAKEKLIITGGVKEIEKSIRKWALSCE----TQQHQENFFINSLEQCEEDDKVNSNSLI 951 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL---------NPSTIDTKG 766 E + + + + N+I E Y + +PS + K Sbjct: 952 ESSLEEKISKDIIIKANSYLDWIVFALMRHKSTNEIRELYNIHCSPLVLTNSPSKWNIKL 1011 Query: 767 KTNLESLLSDNQTF------NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 + + L +R + K+++ I + K I + K A E Sbjct: 1012 LNSEDILAFKKNGALDDQMDSREQLFQKIIEEISEKDTDQYKAEIQRRLSFKYKYSVATE 1071 Query: 821 YKNLL--LSITRLLEN 834 +LL I R + Sbjct: 1072 IPSLLSVTEIKRRFND 1087 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 18/188 (9%) Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEY 821 + RG I+H ++Q + L I+ + KE Sbjct: 1101 LKTPRFLEEEKALTSAERGTIVHLVMQHLDLNRALTMESINEQISEMIKRE--FINEKEA 1158 Query: 822 KNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKI-----------NCPKKDIIISGRI 868 K + + I R + + + D Y E ++ + +DII+ G I Sbjct: 1159 KVVDIRKILRFFSSTIGLRMLRADKIYREYPFKIRVKSNEILKLSKSDDENEDIIVQGVI 1218 Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 D I + I I +YK + ++ I + QL+ Y+ + + L Sbjct: 1219 DTIFVENDEIVIIDYKNDYVNDNIVDTIKTQYKTQLNYYKIAAEKILNKRVKNIYLYLFY 1278 Query: 929 EPKVFIIP 936 +V Sbjct: 1279 SGEVLEYD 1286 >gi|291547104|emb|CBL20212.1| Superfamily I DNA and RNA helicases [Ruminococcus sp. SR1/5] Length = 760 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 117/739 (15%), Positives = 223/739 (30%), Gaps = 135/739 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + Sbjct: 47 GAGSGKTRVLTHRIAYLMEEKGVNPWNILAITFTNKAASEMRERVNKIAGMGAESVWVST 106 Query: 66 FS---------LLSSFFLTQKFTPQKNIITQEINKKSP---DLKEKLKKSQ---DEFIKI 110 F + FT + + K+ D+ K+ K + E Sbjct: 107 FHSACVRILRRHIEVLGFGSNFTIYDADDQKTVMKEIFRKFDINTKIYKERGVLAEISHA 166 Query: 111 RDRFNTYKMFKSTL---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +D T + + + Y+ + N LDF+DLI+ T +L + Sbjct: 167 KDELITPEEMELNAGGDPDARKIAGMYKEYQSILRGNNALDFDDLIVKTVELFQHNPD-- 224 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + +I++DE QDT+ Q++ + L E + + L VGD+ QSIY Sbjct: 225 -ILDYYQERFKYIMVDEYQDTNTAQFKFVSLLAEKY----------KNLCVVGDDDQSIY 273 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA +L +++ + ++ L ++RST +IL ++V + Sbjct: 274 RFRGANIGNILGFEKVFP--------EAKVVRLEQNYRSTQNILNAANEVIVNNTERKEK 325 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW + + + + + A Sbjct: 326 R---------------------LW-------TENEEGDKVHFRQFNNGFEE-------AE 350 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I Q KD VL R + L + Sbjct: 351 YVAGEIIQGRRNG---------KFQYKDCAVLYRTNAQSRLFEEKF----LLANVPYKIV 397 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 IKDL++ + I + DDL+ +L P I ++ + Sbjct: 398 GGVNFYARKEIKDLLSYLKTIDNASDDLAVRRILNVPKRGIGLTSIGRVQDYADMMNLSF 457 Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 Y+ ++ K + +I L A+ + + ++ ++ + Sbjct: 458 YDALRVVEEVPSIGRAAGKINDFVSFIQGLKSKAEAYTVRETLEEVIELTGYVKELEAEK 517 Query: 522 GNEVI---DVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 E + +DE ++ T E ++L + E+ + + V Sbjct: 518 TEEAQARIENIDELISKTESFQEAMEEAGQPATLSAFLEEIALVADIDSVDP--DQDYVL 575 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE P VF+V VF Sbjct: 576 LMTLHSAKGLEFPNVFIVGMEDGVFPGYASIWSGDP------------------------ 611 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 S EE RL YVG+TRA +L + ++ V + Sbjct: 612 --------SDIEEERRLCYVGITRAMKELTLTCAKQRMIRGETQYNRVSRFVREVPRELV 663 Query: 694 RVKKIKLTNSINKDEWIAY 712 + D+ ++ Sbjct: 664 DLGHTIQEKKPRVDDIVSP 682 >gi|319899138|ref|YP_004159231.1| DNA helicase II [Bartonella clarridgeiae 73] gi|319403102|emb|CBI76660.1| DNA helicase II [Bartonella clarridgeiae 73] Length = 817 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 108/550 (19%), Positives = 185/550 (33%), Gaps = 109/550 (19%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L Y++ K DF DL+++ + + I + + +IL+DE QDT Sbjct: 209 MGRQLYRSYQDRLKSLNACDFGDLLLHPIFIFQHNPD---ILREYHDKFRYILVDEYQDT 265 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + H L VGD+ QSIY + GA+ +LR ++ Sbjct: 266 NTAQYLWLRLLAQ-------RHEKQVNLCCVGDDDQSIYGWRGAKVDNILRFEKDF---- 314 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + S ++ G + S T Sbjct: 315 ----SPAKIIRLERNYRSTSHILKTAAHLISHNQDRLGKTLFSDQT-------------- 356 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + + + +DS + AR I I + ++ Sbjct: 357 ------------NSDDAKVKIHAAWDSEEE-------ARAIGKEIEQAQQNGHLLNH--- 394 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 I +LVR L ++ + + I+D +A R + Sbjct: 395 -------IAILVRASFQMREFEDRFVTL----GLNYRIIGGPRFYERMEIRDALAYLRVV 443 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKF 481 + DDL+F ++ +P + + + R + ++ + + Sbjct: 444 VQPADDLAFERIINTPKRGLGNTTLRHLYDSARARSIPLFVAATELIATDELKPKIRNAL 503 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 ++V++ + Q + IL A + E L+ EQ Sbjct: 504 RNVVENFRHWQGMLQHTPHTELAETILDASGYTTMWQEDRSPEAPTRLENLKEMIRSMEQ 563 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L S LE + + N + V IMT+H+AKGLE VFL +F H+ Sbjct: 564 -----FENLPSFLEHVSLVMDSESNENTDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 618 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 +S EE RL YVG+TRA Sbjct: 619 RSLD--------------------------------EGGRSGLEEERRLAYVGLTRAKKY 646 Query: 662 LIICKHSNTS 671 L I SN Sbjct: 647 LHIWCVSNRR 656 >gi|119475989|ref|ZP_01616341.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143] gi|119450616|gb|EAW31850.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143] Length = 1153 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 164/986 (16%), Positives = 325/986 (32%), Gaps = 113/986 (11%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGN-----------PTILKKAQTLQQASQTQ 60 + + I +D+ + +S + + ++ + L L + Sbjct: 219 TLKRIIEDVLDSLHQSLSGLAAELLPLLDYAGCNLRWQNSESVASCLAGIVELPGSESVS 278 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQE-----INKKSPDLKEKLKKSQDEF-------I 108 + ++ LT K +K + + L + LK + Sbjct: 279 NNVSEWKAIAELLLTGKGEWRKTVNVKSGFPTETQDGDKALAKSLKTNFTALLQDLRSND 338 Query: 109 KIRDRFNTYK----------MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 ++R++ N + ++ + + L A ++ +DF + D Sbjct: 339 ELREKLNELRNLPQGHFDRSQWQLLESLTRILPALVAQLMTEFQQRGEVDFSQFSMAALD 398 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLF 217 L + K+D ++ HIL+DE QDTS Q+ +++SL E + +N ++PRT+F Sbjct: 399 ALGDGLNPTELALKLDHQLRHILVDEFQDTSSSQFRLLQSLLEGWQEANRNDPNNPRTVF 458 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD QSIY F A L +R G L +FRS I+ +++ Sbjct: 459 IVGDGMQSIYGFREANVGLFLEARR-----LGVNGVTLVDCPLHTNFRSDPTIVEWINET 513 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 FS G V + + + + D+ Sbjct: 514 FSYAFPQVENRSR---------------GAVPHETAIAFNPIDSSSEVKLFGFTGDDAQL 558 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 E A +I + I +LVR R I Sbjct: 559 AE----------AGKTVALIEAAQLVDPE-------GSIAILVRSRGHLKAIIPAL---- 597 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 + + D L + I DL++L + + + D +S+V +L++P + +D+F++ Sbjct: 598 SRAGLQWNATDIDPLLSYGTINDLLSLTKAMYNLADKVSWVALLRTPWVGLNNNDLFRLL 657 Query: 458 TQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 + ++ G + V + +P + I A Sbjct: 658 SVDKAQSVWSAIGNDEILAGLSSHGKERLGAVRLILQSAYGDRLRQTPRSWIEGIWQALG 717 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 G + G + +FLN R Q LQ L + + ++ N + Sbjct: 718 G----AATHGASESQFVGDFLNLLERFHQGEL--LQSLALFEQAVGGLYASSLPSDSN-I 770 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI----WIPQSKSR 628 +MT+H +KGLE V L G S M +D + Sbjct: 771 SLMTIHKSKGLEFDTVILPGLGRAPRSDDKSLLMWQEYLSDDGLESGLVISPQAAAGSEE 830 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-KKSNQRTWYDMVYD 687 ++I + L S++ E RL YV TRA +L I S+ + K+ + ++ Sbjct: 831 DSIYTYLRSEQAASSRLENTRLFYVAATRAVKRLYISITSSMDEKSGKAKPPSKNSLLGA 890 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 ++ E + N + E++ ++ ++L ++P F Sbjct: 891 AWPVLEDAVQWTDNALGNAVVDKVPAQFGMNFEHS--NPGDSFERLSVAWRVPAWSFPNP 948 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP--------EH 799 P + N+ L D G+I H + +V+ Sbjct: 949 LKTFYLNEAF-PVAGNDASLLNIPDLSIDPLPTCVGVICHGIFEVLAKQGIGHWQQMNAD 1007 Query: 800 KRKNFITSYCTKNAKLWPAKEYK--NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857 KR ++ S + + ++ ++ + + +S D S ++ Sbjct: 1008 KRIVWLDSLLRHHRLPASSWVLAKQQIVKAVENTVSDDRGRWILSRDKQSSH-TELQLMS 1066 Query: 858 PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKIL 911 + + + +D+I ++ I+I +YKT E IE ++ QL+ Y+ +L Sbjct: 1067 VSANTVRNNILDRILTDEEGNIWIIDYKTSTPGDTETLQQFIEKEEAIYMPQLAAYKGLL 1126 Query: 912 -KDSYPNKSLVCLLIYVSEPKVFIIP 936 ++ + L + P + Sbjct: 1127 SAKLGGSQPIRTALYFTHYPHWHEVS 1152 >gi|208780175|ref|ZP_03247517.1| DNA helicase II [Francisella novicida FTG] gi|208743824|gb|EDZ90126.1| DNA helicase II [Francisella novicida FTG] Length = 740 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 126/758 (16%), Positives = 234/758 (30%), Gaps = 146/758 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89 I ++ + + S F ++ L + Q ++ + I Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 N D K+ K FI + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL+++ +L +R + +ILIDE QDT+ +Q+ ++ L D Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 + AVGD+ QSIY + GA + + + II+L ++RST + Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 IL V + V +N +LW + + ++ Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVEL 317 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + A+ I I + + DI +L R + ++ Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416 Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + I + + + ++ S I+ I+ + S Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELINGISAQISQHSLDK 476 Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MT+H +KGLE VFLV VF I Sbjct: 537 AVLEAGD--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + + E RL YV +TRA L I + Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRNIF 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ T + K + A Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFTVAKPKTKQKA 670 >gi|254374966|ref|ZP_04990446.1| DNA helicase II [Francisella novicida GA99-3548] gi|151572684|gb|EDN38338.1| DNA helicase II [Francisella novicida GA99-3548] Length = 740 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 125/758 (16%), Positives = 232/758 (30%), Gaps = 146/758 (19%) Query: 5 FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43 GL+ + + +D ++ L + G Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67 Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89 I ++ + + S F ++ L + Q ++ + I Sbjct: 68 KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127 Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 N D K+ K FI + + + K T ++ YEE + + LDF Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL+++ +L +R + +ILIDE QDT+ +Q+ ++ L D Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 + AVGD+ QSIY + GA + + + II+L ++RST + Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 IL V + V +N +LW + + ++ Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVEL 317 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + A+ I I + + DI +L R + ++ Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 I F D IKD +A R ++ D+L+F ++ +P Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416 Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + I + + + ++ S I+ I + S Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKGLVTKRTASLLLKFIELISGISAQISQHSLDK 476 Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553 ++ + + ID L E ++ E ++ LQ+ +S Sbjct: 477 LLESVINQSGLLASYQEKDSEKDRQKIDNLKELISAAKDFEPQIELLDDNIDILQDFLSF 536 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MT+H +KGLE VFLV VF I Sbjct: 537 AVLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + + E RL YV +TRA L I + Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRNIF 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +S+ + V + K++ + K + A Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFAAAKPKTKQKA 670 >gi|301163499|emb|CBW23050.1| putative helicase [Bacteroides fragilis 638R] Length = 786 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 218/689 (31%), Gaps = 129/689 (18%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A + + + + Y E ++ +DF+DL++ T L + + + ++ ++L+ Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L + Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I + +L ++RST I+ + + E S Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + + +Y D + + I+ + Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + D +L R + + R + IKD++ Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474 A R +++ D+ +F ++ P + + KI T +++ + + Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 +K Q I + + + ++ T I+ + E + ++E Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518 Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 +N + E N+ SL + +SE+ + +V +MTVH+AKGLE Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 VF+V +F E Sbjct: 578 RNVFVVGMEENLFPSGMAGDSP----------------------------------RAME 603 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV +TRA + + K + + D ++ + Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP-------YILN 758 + + + E + ++ ++ + I L+ Sbjct: 664 DEGAGRFRREMEEGYSRRSSSERFSARPSADRPERERPKAQIIAPTVPRNLKKVSGTTLS 723 Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786 PS+ G ++ + +++ F G +I Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752 >gi|50914312|ref|YP_060284.1| DNA helicase II [Streptococcus pyogenes MGAS10394] gi|94990600|ref|YP_598700.1| DNA helicase II [Streptococcus pyogenes MGAS10270] gi|50903386|gb|AAT87101.1| DNA helicase II [Streptococcus pyogenes MGAS10394] gi|94544108|gb|ABF34156.1| DNA helicase II [Streptococcus pyogenes MGAS10270] Length = 772 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 115/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L D + + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L S D +L + E I+ ++EFL+ T Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + K + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + E T + L ++ + + + + P Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710 >gi|53713817|ref|YP_099809.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46] gi|52216682|dbj|BAD49275.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46] Length = 786 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 213/689 (30%), Gaps = 129/689 (18%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A + + + + Y E ++ +DF+DL++ T L + + + ++ ++L+ Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L + Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I + +L ++RST I+ + + E S Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + + +Y D + + I+ + Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + D +L R + + R + IKD++ Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474 A R +++ D+ +F ++ P + + KI T +++ + + Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 +K Q I + + + ++ T I+ + E + ++E Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518 Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 +N + E N+ SL + +SE+ + +V +MTVH+AKGLE Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 VF+V +F E Sbjct: 578 RNVFVVGMEENLFPSGMAGDSP----------------------------------RAME 603 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV +TRA + + K + + D ++ + Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663 Query: 706 KDEWIAYEWSTHHP-------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 + + E + + P L+ Sbjct: 664 DEGAGRFRREMEEGYSRRSSSERFSARPSADRPEREQPKAQIIAPTVPRNLKKVSGTTLS 723 Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786 PS+ G ++ + +++ F G +I Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752 >gi|294790788|ref|ZP_06755946.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304] gi|294458685|gb|EFG27038.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304] Length = 885 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 111/672 (16%), Positives = 205/672 (30%), Gaps = 124/672 (18%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKSTLASLTLAKYLNAHYE 138 K + I D K L+ +Q + + F+ + + + Y+ Sbjct: 166 KRYTPRAILSTISDWKNSLEDAQTKLSEYAPDFHPDIPVHSLGDGGNAERVYAIVYGEYQ 225 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 +DF+DLI+ T +L ++ + + +I +DE QDT+ Q+++IR+ Sbjct: 226 HRLASANAVDFDDLIMRTVELFRRSPQA---LDFYRRRFLYIFVDEYQDTNHAQYQLIRA 282 Query: 199 LTE--------------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 L+ D + T P + VGD QSIY+F GA+ +L ++ Sbjct: 283 LSGVDETVHTSQTQTDTDSSRPEATPVRPAWITVVGDSDQSIYAFRGADISNILDFEKDF 342 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + I L ++RST IL + V S + + Sbjct: 343 PQ--------AKTIMLEQNYRSTQTILDAANAVISQNQGRKPKK---------------- 378 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW + +A + +A TI+ + Sbjct: 379 -----LWTDLGQGDSIVGFAA--------------DNAQQEGQWVARTIAQLAAEGE--- 416 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 D+ ++ R + + I + IKD +A Sbjct: 417 ------YSYSDMAIMYRANAQSRALEEAL----ISAGIPYQLVGGTKFYERREIKDALAY 466 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCG 477 + + + DD++ +L P + E T ++ I + + Sbjct: 467 LQCLSNPADDVNTRRILNVPKRGLGPRAESMLNAYASQEDITFWQAINRAESIPGMTSRI 526 Query: 478 ISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + Q + L AQ P +L ++ + +D L + Sbjct: 527 LHPLQAFRDLMTGLRTFAQDNDSHPAAIVQQVLQESGILRELEKSLDPQDMSRVDNLSQL 586 Query: 533 LNFTLRNEQNS-YSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 + EQ + ++L + N +V +MT+HTAKGLE PVVFL Sbjct: 587 QSVAAEFEQTAMDATLSGFLETTSLVADADALPDQGENRGQVTLMTLHTAKGLEYPVVFL 646 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 F H +S E RL Sbjct: 647 TGMEEGTFPH----------------------------------ARSMENESELSEERRL 672 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 YVG+TRA +L + + + + + + + + + T+ + W Sbjct: 673 AYVGITRARRRLYLTRSAVRAQWGNVQELMPSRFLDEIPQELISWDRKEATSERIRSRWA 732 Query: 711 AYEWSTHHPENT 722 + E Sbjct: 733 QGDDDWDGDEAE 744 >gi|299143270|ref|ZP_07036350.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517755|gb|EFI41494.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1036 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 168/927 (18%), Positives = 330/927 (35%), Gaps = 120/927 (12%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78 + +D + + E GN L ++ I++ F + F Sbjct: 191 EFLNEISKIKTDFSTLIYWIHELGNHKKLASNSKFRKLYAGDDIKKFFESPNFDFF---- 246 Query: 79 TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138 ++ + NK+ ++ K++ ++ + K ++ + K + Y Sbjct: 247 EKIRSCVQDSKNKEIYEIMGKIRLEMLRL-ELVNEPKNQKYYELIT---DILKDIEIEYT 302 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 K++ LD+EDL +L ID E +I++DE QDT+ IQ E+++ Sbjct: 303 FKKREKNYLDYEDLQKYALKILNSE---------IDIEYKYIMVDEFQDTNKIQTEILKK 353 Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 LT + S LF VGD KQSIY F G + + + + + + + Sbjct: 354 LTNNL-------SDNVNLFVVGDAKQSIYGFRGGDLSQYKKFVKEMESK------DCISL 400 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 ++ ++RS++ ++ +++F L E+ + + Sbjct: 401 DMNENYRSSSSLIESFNELFPKI----------------------------LGEEYTNLN 432 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 + ++ + D + A A I I I KDI + Sbjct: 433 ANLKGDEKIKILEFCDDSKESVVA---ANYIDSLIKAGIDK--------------KDIAI 475 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R K+ ISV + ++ I+D++ L + + + D L+ + Sbjct: 476 LFRTAKNMESFESEL----ISRNISVNNTAK-KFSEFREIRDIIVLLKALSNNRDILNIL 530 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHELIHIAQF 497 KSPL SE+ IFK+ + +T+ + +E ++ + F + I L Sbjct: 531 AYFKSPLVGLSENSIFKLALRSKDTDILNFELEKELDDRDKELFNNGISKYFTLREYKNV 590 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557 + +F +++ + + F FG I +D+ + + E+ S +L+E I+ ++ Sbjct: 591 LTLSEFIAMVVKELRCYEIFRMCFGKNSILNIDKLILLSNEFEKKSL-NLEEFINYVQN- 648 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + + V +MT+H +KGLE + L D + + I + Sbjct: 649 ---VVLDGEKTEDAVTLMTIHKSKGLEFDHIILSDFKKNLLKKPTENIIKIGENGLG--- 702 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-IICKHSNTS----- 671 + K+R + +I+ K + EE R+ YV TRA L + Sbjct: 703 -----IKIKNRESKYYFIIEAEKLNELEEERRIFYVAATRAKKTLTFLSCKYKEKEDIEK 757 Query: 672 NEKKSNQRTWYDMVYDSFHNDE--RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729 + + + ++++++ ++ N+ + +K EN L R+E Sbjct: 758 GNENNVKNSYHELLKNTQFNNLKIISPSYEEVLRNSKPNIFEKLNMIGDFENNTLIRDEY 817 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789 + + + K D Y + + K S RG+I+HK Sbjct: 818 FDRNKQFRYYSASGYMAFKKDPVSFYRTYILGDEIEYKPEG-SEYEGIDPIKRGIIVHKY 876 Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849 Q F+ +N L I + ++ T Sbjct: 877 AQFCP----SDIDEFLKRELEQNDIAVTNYVLDLLKDRIKNVDKSQRGTILHR------- 925 Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909 + P K+ II+G IDQI +I I ++KT H + IE+ + QL IY + Sbjct: 926 --EYEFYYPVKNGIINGFIDQIREVNGDIEIIDFKTGHLTKESIEY----YKLQLQIYTR 979 Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + +LI +++ I Sbjct: 980 AYESISGKHVKSAILISLADNTEHEID 1006 >gi|168214037|ref|ZP_02639662.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str. F4969] gi|170714486|gb|EDT26668.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str. F4969] Length = 1271 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 124/652 (19%), Positives = 227/652 (34%), Gaps = 55/652 (8%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F L S + T+ + +S + E L+ + E KM+ Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178 L + Y + K++ +LDF DL ++L +D + + + + Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFE 398 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P+ L Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296 + ++ I L +FRS +I+ V+ +F + L D + Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343 +S E + + + E + S Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDDDELGEEEEDLDSIK 567 Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR I I+ ++ + GK R I+ KDI++L+R K+ Sbjct: 568 LEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWS---ETFVDE 624 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ + Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684 Query: 457 CTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + Y + + K ++ + Y+++ A + +F + Sbjct: 685 RLLNRDKYFFEIIKEVVDGTYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E S+ L I+ + Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + K + K + E R+LYV TRA ++LII + + Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916 Score = 117 bits (293), Expect = 8e-24, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 19/187 (10%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144 Query: 829 TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + +S Y E+ +I ++ + + G ID Sbjct: 1145 QKFFKSELGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + +YKT + E E + Q+++Y+ L + L K Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1264 Query: 932 VFIIPQN 938 I + Sbjct: 1265 ELKISKE 1271 >gi|303233897|ref|ZP_07320546.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna BVS033A4] gi|302494822|gb|EFL54579.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna BVS033A4] Length = 724 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 101/577 (17%), Positives = 187/577 (32%), Gaps = 122/577 (21%) Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ T L YE K+ LDF+DLI+ TN L ++ Sbjct: 144 RLKNAGATEKNIDKEDFDISLSTFTMELFQKYEHKLKRYNSLDFDDLIVKTNLLFEENPD 203 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R K ++ +DE QDT+ Q+++I++L S + VGD QS Sbjct: 204 ---LREKYSDRFKYVFVDEYQDTNDTQYKLIKNLV----------SKNDNICCVGDSDQS 250 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY + GA + + ++ + +I L ++RST IL + + V + Sbjct: 251 IYGWRGANIQNIQNFEKDFKN--------AKVILLEQNYRSTQPILDLANTVIKNNSLRK 302 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + LW ++++ + ++ + Sbjct: 303 DKN---------------------LW---TAKNEGDMPIYRRMYSDIDE----------- 327 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A ++ I + R +++ +L R + L L I Sbjct: 328 ADQVVQWIEQ----------ERYRENPYEEMAILYRTNAQSRLFEERLNRL----GIPNR 373 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464 D IKD ++ R + + D+++ ++ P + + K + ++ + Sbjct: 374 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQNRSI 433 Query: 465 TVYEYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518 ++ +YI+ F+N K Q I + + IL R Sbjct: 434 SMMQYIKDTDLPDFSNATAKKLQEFYYLIKSFPK--DQMNVAELMEYILDKTGYRANLEK 491 Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIM 575 +R ++ +DE+++ + Q++ + L LE N V +M Sbjct: 492 STNRDDKTRMENIDEYVSSLYQFVQDNPD--KNLREYLETSSLMTDLDKTDDNTKGVSMM 549 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE VVF + Sbjct: 550 TIHAAKGLEFDVVFFTGLEEGTIPSRV--------------------------------- 576 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 EE RL YV +TRA +L I + Sbjct: 577 -----DEDVEEERRLCYVAITRARKKLYITSVQSRRR 608 >gi|271962781|ref|YP_003336977.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021] gi|270505956|gb|ACZ84234.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021] Length = 762 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 104/620 (16%), Positives = 197/620 (31%), Gaps = 112/620 (18%) Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 +++ +Y+ + +DF+DLI+ T L + + + + Sbjct: 175 AAGQASSHLERTLAEAYRNYQRKLTEAGAMDFDDLIMLTVTLFQ---IFPDVAEHYRRRW 231 Query: 178 NHILIDEVQDTSLIQWEVIRSLTE--DFFVGKNTHSSPRT-----LFAVGDEKQSIYSFH 230 H+++DE QDT+ Q+ +IR L + T L VGD QSIY+F Sbjct: 232 RHVMVDEYQDTNHAQYTLIRELVGAPELRTADGDLVREGTIAPAELCVVGDADQSIYAFR 291 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + +L +R I L ++RST IL+ + V S E+ + + Sbjct: 292 GATIRNILEFERDYPN--------AKTILLEQNYRSTQTILSAANAVISRNESRKPKNLW 343 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 S D P+ + + + A +A Sbjct: 344 S---------------------------DQGAGPKIVGYVADNEHDE--------AMFVA 368 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 + + + + + V R + + + + Sbjct: 369 QEVDKLTDDE---------GVVPGQVAVFYRTNAASRVFEEIF----IRTGLPYKVVGGV 415 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469 + ++DL+A R + + D +S +L P + + E +E Sbjct: 416 RFYERKEVRDLLAYLRVLANPNDVVSLRRILNVPKRGIGDRAEAMVEAFASRERIPFWEG 475 Query: 470 IQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 +++ A ++ + + + EL+ A P + +L + R + + Sbjct: 476 LRRADEAPGMATRSLNAIREFVALMEELMAKAAGTPPSELAQEVLESTGYRTELATSGDP 535 Query: 524 E---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAH-SANHNEVRIMTVH 578 + ++ LDE ++ E+ + L E + ++ + V +MT+H Sbjct: 536 QDESRLENLDEMISVASEFEEANPEGTLVEFLEQVSLVADADQIPAGDGGQGVVTLMTLH 595 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 TAKGLE PVVFL VF H Sbjct: 596 TAKGLEFPVVFLTGMEDGVFPHMRSLGEP------------------------------- 624 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 EE RL YVG+TRA +L + + + S+ V + + Sbjct: 625 ---KELEEERRLAYVGITRAEKRLYVSRAAVRSSWGAPAFNPASRFVAEIPGELVDWRGD 681 Query: 699 KLTNSINKDEWIAYEWSTHH 718 N+ + Sbjct: 682 PGKNAWSAGTSRRETRPAPA 701 >gi|241667801|ref|ZP_04755379.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876345|ref|ZP_05249055.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842366|gb|EET20780.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 742 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 102/578 (17%), Positives = 183/578 (31%), Gaps = 110/578 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 ++ YEE + LDF DL++ +L ++ +R +ILIDE QDT+ Sbjct: 168 AHIYTAYEERLLLDNALDFADLLLYLYELFS---LNQQLREYYQSLFKYILIDEFQDTNQ 224 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ ++ L D + AVGD+ QSIY + GA + + Sbjct: 225 VQYMWLKLLVTD----------NNYMMAVGDDDQSIYGWRGAVVDNI--------HKYVA 266 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 II+L ++RST +IL V + V +N +L Sbjct: 267 DLNDVEIIKLEQNYRSTKNILKVANSVIKNNDNRMSK---------------------EL 305 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + ++ + + A+ I I + Sbjct: 306 W-------SAAEDGEKVEVYCAVNERDE-------AKYIIDKIRQLHDEG---------- 341 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + DI +L R + ++ I F D +KD +A R ++ Sbjct: 342 VDYSDIAILYRSNYLSRVLEES----CIYASIPYRIYGGFRFFDRAEVKDALAYLRLAVT 397 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFAN------CGISKFQH 483 D+L+F ++ +P + I + ++ S Sbjct: 398 SNDNLAFERIINTPTRGIGNKTLDTIRNFSQINNVSYWQATIDIIQKEIVTKRTASLLLK 457 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE 540 I+ I+ + + S ++ + + ID L E ++ E Sbjct: 458 FIEIINAISSQIKDLSLDKLLETVINESGLLASYQEKDTEKDRQKIDNLKELISAAKDFE 517 Query: 541 ------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 ++ LQ+ +S N + V++MT+H +KGLE VFLV Sbjct: 518 PQIELLDDNTDILQDFLSFAVLEAGE--MQADENTDSVQLMTIHASKGLEFRYVFLVAAE 575 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 VF I + + E RL YV Sbjct: 576 EGVFPPSSIIN----------------------AEEAYTSAESKKIQEKLAEERRLFYVA 613 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 +TRA L I + +S+ + + + Sbjct: 614 VTRAMKALTISYAQVRNIFGRSSFQVKSRFLMEIDSEH 651 >gi|313888327|ref|ZP_07821998.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845730|gb|EFR33120.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 734 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 101/588 (17%), Positives = 185/588 (31%), Gaps = 118/588 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + YE+ N LDF+DL+I T D+L+ + +R + +I +DE QDT+ Sbjct: 168 LGKIYEIYEKKLVSNNALDFDDLLIKTVDILRDYED---VRSFYRSKFEYIFVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 IQ+E I+ + L VGD QSIY + GA+ +L + Sbjct: 225 KIQYEFIKLVAG----------KEPNLTVVGDNDQSIYKWRGADINNILNFHKDFP---- 270 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 I++L ++RST IL V +K+ + Sbjct: 271 ----GAKIVKLEQNYRSTQKILEVANKIIENNRTRIEKN--------------------- 305 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW S+ + + + S +E + I + Sbjct: 306 LW-------TSRNEGKPVVYREFPHSNEEEYG-------VINKIIGLHYKGE-------- 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + KD+ +L R + I D + +KD++A R I Sbjct: 344 --EFKDMAILYRTNAQSRGFEEAL----VRESIPYKIVGGLKFYDRMEVKDILAYLRAIN 397 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY------EYIQKFANCGISKFQ 482 + +D++S ++ P + + + ++Y + + + Sbjct: 398 NTDDNVSLSRIINRPKRGIGDTSLADLLDYADKNGISLYNLVANIDKFEDLNIRARKNVR 457 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 + L ++ S F +L + S+ E + ++E + + Sbjct: 458 DFGSILKILKDRSEKLSIGKLFEEVLYESGYVEDLKSQNTIEAKTRLENIEELHSNIMEY 517 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++ EL L ++ + V +MT+H AKGLE VFLV +F Sbjct: 518 DREGV----ELAEYLNTLSLLSDVDKTSEESGVNLMTMHAAKGLEFSTVFLVGFEEGLFP 573 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + RL YVG+TRA Sbjct: 574 SNRSIESEDEVEEE----------------------------------RRLCYVGVTRAC 599 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 + L I S K +++ + ++ +D Sbjct: 600 NNLFISSSRTRSMYGKLTPAKRSRFIHEMGETIKIIEDKSRELLEIRD 647 >gi|312862860|ref|ZP_07723100.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396] gi|311101720|gb|EFQ59923.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396] Length = 769 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 116/712 (16%), Positives = 220/712 (30%), Gaps = 136/712 (19%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 E+ +L+ T P+K + S + L + E Sbjct: 112 DPGEQRTLMKRILKTLNLDPKKWNERAILGTISNAKNDLLDEVAYE-------------H 158 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 ++ + Y+E +++ +DF+DLI+ T L K + Q +I Sbjct: 159 QAGDMYTQIVAKCYKSYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYI 215 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 +DE QDT+ Q+++++ L F + + VGD QSIY + GA+ + +L Sbjct: 216 HVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDF 265 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + ++ L ++RST IL ++V N + Sbjct: 266 EKDYPE--------AKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------ 305 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + +Q + D + A +A TI N++ + Sbjct: 306 ---------LW-------TQNDDGEQIVYYRANDERDE-------AVFVASTIDNIVREE 342 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 KD VL R + I I I+D Sbjct: 343 GK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRD 389 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-- 477 +++ I + D++SF ++ P + KI + ++ + Sbjct: 390 VISYLNLIANPSDNISFERVVNEPKRGVGPGTLEKIRNFAYEQNMSLLDASANIMLSPIK 449 Query: 478 ---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 I L S + IL + E I+ ++E Sbjct: 450 GKAAQGVYDFANTILNLRDQLDGLSITETVEAILDKSGYLDALSMQQTLESQARIENIEE 509 Query: 532 FLNFTLRNEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 F++ T ++ + L +++L T A V +MT+H AKG Sbjct: 510 FMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGDMEAAE--VTLMTLHAAKG 567 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL+ VF + Sbjct: 568 LEFPVVFLIGMEEGVFPLSRSSEDPEELEEER---------------------------- 599 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 RL YVG+TRA + L + + + K++ + + + + + + Sbjct: 600 ------RLAYVGITRAEEILFLTNANTRTLFGKTSYNRPSRFLREISDDLLQYQGLARPA 653 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 + + E T + L++ ++ + + K P Sbjct: 654 NSSFGVRFTKEEPTQFGQGMSLQQALQTRKANAQPQRHTGAQPFSKATGGLP 705 >gi|167627248|ref|YP_001677748.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597249|gb|ABZ87247.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 742 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 102/576 (17%), Positives = 182/576 (31%), Gaps = 110/576 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YEE + LDF DL++ +L ++ +R +ILIDE QDT+ +Q Sbjct: 170 IYTAYEERLLLDNALDFADLLLYLYELFS---LNQQLREYYQSLFRYILIDEFQDTNQVQ 226 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + ++ L D + AVGD+ QSIY + GA + + Sbjct: 227 YMWLKLLVTD----------NNYMMAVGDDDQSIYGWRGAVVDNI--------HKYVADL 268 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 II+L ++RST +IL V + V +N +LW Sbjct: 269 NDVEIIKLEQNYRSTKNILKVANSVIKNNDNRMSK---------------------ELW- 306 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + ++ + + A+ I I + + Sbjct: 307 ------SAAEDGEKVEVYCAVNERDE-------AKYIIDKIRQLHDGG----------VD 343 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 DI +L R + ++ I F D +KD +A R ++ Sbjct: 344 YSDIAILYRSNYLSRVLEES----CIYTSIPYRIYGGFRFFDRAEVKDALAYLRLAVTSN 399 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFAN------CGISKFQHVI 485 D+L+F ++ +P + I + ++ S I Sbjct: 400 DNLAFERIINTPTRGIGNKTLDTIRNFSQINNVSYWQATIDIIQKEIVTKRTASLLLKFI 459 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE-- 540 + I+ + + S ++ + + ID L E ++ E Sbjct: 460 EIINAISSQIKDLSLDKLLETVINESGLLASYQEKDTEKDRQKIDNLKELISAAKDFEPQ 519 Query: 541 ----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 ++ LQ+ +S N + V++MT+H +KGLE VFLV Sbjct: 520 IELLDDNTDILQDFLSFAVLEAGE--MQADENTDSVQLMTIHASKGLEFRYVFLVAAEEG 577 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 VF I + + E RL YV +T Sbjct: 578 VFPPSSIIN----------------------AEEAYTSSESKKIQEKLAEERRLFYVAVT 615 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 RA L I + +S+ + + + Sbjct: 616 RAMKALTISYAQVRNIFGRSSFQVKSRFLMEIDSEH 651 >gi|168217733|ref|ZP_02643358.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC 8239] gi|182380203|gb|EDT77682.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC 8239] Length = 1271 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 124/652 (19%), Positives = 229/652 (35%), Gaps = 55/652 (8%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F L S + T+ + +S + E L+ + E KM+ Sbjct: 279 ASFGRLKSVRKASVDDEKALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178 L + Y + K++ +LDF DL ++L +D + + + + Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFE 398 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P+ L Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296 + ++ I L +FRS +I+ V+ +F + L D + Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343 +S E + + + + E + + S Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVSGDIELNILNKAGNKDYSNDDELGEEEEDLDSIQ 567 Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR I I+ ++ + GK R I+ KDI++L+R K+ Sbjct: 568 LEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ + Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684 Query: 457 CTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + Y + + K ++ + Y+++ A + +F + Sbjct: 685 RLLNKDKYFFEIIKEVVDGIYDESISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E S+ L I+ + Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + K + K + E R+LYV TRA ++LII + + Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 19/187 (10%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144 Query: 829 TRLLENPMMTTAM-----SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + + Y E+ +I ++ + + G ID Sbjct: 1145 QKFFKSDLGQRMLNSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + +YKT + E E + Q+++Y+ L + L + Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLER 1264 Query: 932 VFIIPQN 938 I + Sbjct: 1265 ELKISKE 1271 >gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M] gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M] Length = 769 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 109/654 (16%), Positives = 196/654 (29%), Gaps = 123/654 (18%) Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 L + ++E I + + + + A Y+ + LDF+DLI Sbjct: 148 LANAISNLKNELID--PDRAVSDLSEDSDDLARTVASVYAEYQRRLRAANALDFDDLIGE 205 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 T +L+ I + H+L+DE QDT+ Q+ ++R L + P Sbjct: 206 TVGILQ---AFPDIAGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQ 262 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 L VGD QSIY+F GA + + +R + I L ++RST +IL+ + Sbjct: 263 LCVVGDADQSIYAFRGATIRNIEDFERDYP--------DATTILLEQNYRSTQNILSAAN 314 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 V S + LW + + Sbjct: 315 SVISRNSGRREKR---------------------LW-------TDAGAGELIVGYVADNE 346 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 + AR +A I + D I D+ V R + + + Sbjct: 347 HDE-------ARFVAEEIDALAERDE---------ITYNDVAVFYRTNNSSRSLEEVF-- 388 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 I + I+D++A R + + D +S +L +P + Sbjct: 389 --IRAGIPYKVVGGVRFYERKEIRDIIAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEAC 446 Query: 456 ICTQRHETETVYE---------YIQKFANCGISKFQHVIKYIHELIHI--AQFCSPHDFF 504 + T + + + ++ + EL + + Sbjct: 447 VAVYAENTGAGFSDALVAAAEGKVPMLNSRAEKAIAGFVELLDELRGRLDSSEGDLGELV 506 Query: 505 TLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------------EQNSYSSLQE 549 +L R++ S + +D L+E ++ + Sbjct: 507 EAVLERTGYRRELESSTDPQELARLDNLNELVSVAHEFSTDLANAAEPEPDAEDVPDTGM 566 Query: 550 LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 L + LE+ H V +MT+HTAKGLE PVVF+ +F H Sbjct: 567 LAAFLERVSLVADTDDIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDP 626 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 E RL YVG+TRA +L + + Sbjct: 627 T----------------------------------ELSEERRLAYVGITRARQRLYLSRA 652 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 S+ + + + +++ S + A + T Sbjct: 653 IVRSSWGQPMLNPESRFLREIPQELLNWRRLAPKPSFSAPVSGAGRFGTARSAP 706 >gi|225856731|ref|YP_002738242.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031] gi|225724965|gb|ACO20817.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031] Length = 763 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 100/592 (16%), Positives = 190/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF + RL Sbjct: 575 IGMEENVFPLSRATEDTDELEEE----------------------------------RRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|284992801|ref|YP_003411355.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM 43160] gi|284066046|gb|ADB76984.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM 43160] Length = 765 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 105/630 (16%), Positives = 203/630 (32%), Gaps = 110/630 (17%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + + +++ + F A + K Y+ ++ +DF+DLI+ T LL Sbjct: 163 RSLAAQVSNLKNELVDEESFSPQTAPEKVLKEAYTLYQRRLREAHAMDFDDLIMTTVHLL 222 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + + + H+L+DE QDT+ Q+ ++R L P L VG Sbjct: 223 Q---AFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVG----TGEGPVPPAELCVVG 275 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D QSIY+F GA + + +R + + I L ++RST IL ++V + Sbjct: 276 DADQSIYAFRGATIRNIDEFERDYPQ--------ATTILLEQNYRSTQRILKAANQVIAK 327 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + + LW + + + + Sbjct: 328 NTGRRPKN---------------------LW-------TDAGDGELIEGYVAENEHDE-- 357 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A +A I ++ + KDI V R + + + Sbjct: 358 -----AAWVAEQIDALVDEGE---------ARPKDIAVFYRTNNASRVFEEVF----IRV 399 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 + + ++D +A + + + D +S ++ P + I + Sbjct: 400 GMPYKVVGGVRFYERKEVRDALAYLKLVANPADVVSLRRIINVPKRGIGDKAEGCIESFA 459 Query: 461 HETETVYEYIQK-------FANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKK 512 + + A + Q + + E +A+ S P IL Sbjct: 460 DRERIAFGSALRRCSEVTTLAPRSLKAVQEFVALLEEFEQLAETGSGPAALLESILDRTG 519 Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSAN 568 + + + +D L+E ++ E + S+ + + ++ + + + Sbjct: 520 YLAELQASTDPQDEGRVDNLNELISVAAEFEAANPGGSVPDFLEQVSLVADADQIPVAGD 579 Query: 569 H-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 V +MT+HTAKGLE PVVFL VF H Sbjct: 580 DAGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPH--------------------------- 612 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687 L EE RL YVG+TRA +L I + + ++ + + + Sbjct: 613 -------LRALGDPRELEEERRLAYVGITRARQRLFISRATVRTSWGQPAYNPPSRFLDE 665 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 + R + + + A + Sbjct: 666 LPSDTVRWAGKEPVPAPSTGYRSAQQRVAA 695 >gi|291549932|emb|CBL26194.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14] Length = 768 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 104/669 (15%), Positives = 210/669 (31%), Gaps = 110/669 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 27 GAGSGKTRVLTHRIAYLIGERGVNPWNILAITFTNKAAEEMRQRVDNLVGFGAESVWVST 86 Query: 66 FSL--------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFI 108 F + F QK +I ++++ + KE+ Sbjct: 87 FHSACVRILRRFIDRLGYENHFTIYDTDDQKTLIKEVCRKVDVDTKVFKER--SLLSAIS 144 Query: 109 KIRDRFNTYKMFKSTL----ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++ F+ A + +AK + YE + N LDF+DL++ T LL+ + Sbjct: 145 SAKNEMILPDEFELNAGGDFAKMKIAK-VYREYEAQMRANNALDFDDLLVKTVQLLQTQP 203 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + +I++DE QDT+ +Q++++ L + + L VGD+ Q Sbjct: 204 D---VLESYQERFRYIMVDEYQDTNTVQFQLVSLLAGKY----------KNLCVVGDDDQ 250 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY F GA + +L + +I+L ++RST +IL + V + Sbjct: 251 SIYKFRGANIRNILDFEHEFP--------DAKVIKLEQNYRSTGNILNAANSVIANNRGR 302 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + S LW + + + + Sbjct: 303 KEKS---------------------LW-------TENGEGELIRLRQFDTAFDE------ 328 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 A I I + + D VL R + L+ + I Sbjct: 329 -ADFIGEDIKSAVRQGG----------SYNDSAVLYRTNAQSRLLEEKFIAM----NIPY 373 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHET 463 IKDL+A + I + DD++ ++ P I +I Sbjct: 374 KIVGGVNFYARREIKDLLAYLKTIDNGRDDVAVRRIINVPKRGIGLTTINRIQESATERG 433 Query: 464 ETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 YE + +K I +A+ + D ++ + Sbjct: 434 IGFYEALLAPGLIAGVGRSATKLDSFAALIEYFKTLAEEMNITDLLQEVIEKTGYIESLE 493 Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHN 570 + E + +DE ++ E++ ++L + E+ + + Sbjct: 494 NEDKEEAKTRKENIDELISKAATYEESCQDKDEKATLSGFLEEVALVADID--SLDEDQE 551 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V +MT+H+AKGLE P V+L +F L ++ + + Sbjct: 552 YVVLMTLHSAKGLEFPRVYLAGMEDGLFPGYMSINAGDREELEEERRLCYVGITRAEQEL 611 Query: 631 IVSDLIKHL 639 ++ + + Sbjct: 612 TLTSARRRM 620 >gi|253565788|ref|ZP_04843243.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5] gi|251946067|gb|EES86474.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5] Length = 786 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 217/689 (31%), Gaps = 129/689 (18%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A + + + + Y E ++ +DF+DL++ T L + + + ++ ++L+ Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L + Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I + +L ++RST I+ + + E S Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + + +Y D + + I+ + Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + D +L R + + R + IKD++ Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474 A R +++ D+ +F ++ P + + KI T +++ + + Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 +K Q I + + + ++ T I+ + E + ++E Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518 Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 +N + E N+ SL + +SE+ + +V +MTVH+AKGLE Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 VF+V +F E Sbjct: 578 RNVFVVGMEENLFPSGMAGDSP----------------------------------RAME 603 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV +TRA + + K + + D ++ + Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP-------YILN 758 + + + E + ++ ++ I L+ Sbjct: 664 DEGAGRFRREMEEGYSRRSSSERFSARPSADRPERERPKVQIIAPTVPRNLKKVSGTTLS 723 Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786 PS+ G ++ + +++ F G +I Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752 >gi|240142707|ref|YP_002967220.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A) [Methylobacterium extorquens AM1] gi|240012654|gb|ACS43879.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A) [Methylobacterium extorquens AM1] Length = 1116 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 152/876 (17%), Positives = 296/876 (33%), Gaps = 91/876 (10%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151 ++ E K + + + + + + Y++ K+ +LDF+D Sbjct: 303 EADLFHEAAKALHGACCDTWESMRANAASELLVRLVVQVRVVLHRYQDRKRAGALLDFDD 362 Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF------FV 205 LI + LL+ + +R + + H+L+DE QDT +Q E++ L + Sbjct: 363 LIASAATLLRDHE---EVRQALGRRYRHVLVDEFQDTDPLQAEILWLLCGELPADAAGAA 419 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 + P LF VGD KQ+IY F GA+ ++ + + ++ +I + +FR Sbjct: 420 WTDRVLRPGALFLVGDPKQAIYRFRGADVSTYVQARDCIRAKSPED-----VISVSTNFR 474 Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 S IL VD F +G Q G V L C Sbjct: 475 SCRSILAFVDNRFREVLQVEG-----------------QPGYVALDPFHEDHDRGPCVAA 517 Query: 326 QESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKR 383 + + D ++ A +A + +IG + + R++QA DI +L Sbjct: 518 LDIPAAEGDGKRSADALRDAEAEAVADLCARLIGQRLVTCSRNGTRILQAGDIALLAPSG 577 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 D I V I+DL+AL R + D L+ +L+ Sbjct: 578 SDLWRYEEALEA----RGIPVSTQAGKGFFRRQEIQDLIALTRVLADPRDTLALGALLRG 633 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIAQF 497 P +++++ + + QK A+ + VI + L A Sbjct: 634 PAVGLTDEELLDLVDGLPRDPERPDARQKLRLGLDVAHVAHPVAREVIGRLQVLARRALG 693 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQ-ELISE 553 +PHD + + A + R R +D FL + + + + Sbjct: 694 TTPHDILSQAVDAIRLRPVVRQRHDGHAERALANVDLFLEMSRPYAVRGLRAFARAMKAA 753 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + T++ A V + T+H +KGLE PVV ++T + + +L Sbjct: 754 WDGRTRTVEGRPDAQEAAVSLFTMHASKGLEWPVVIPINT--------STRTKAVSGALV 805 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 D P ++ P R D + ++ E RL YV TRA + L++ + S+ Sbjct: 806 DRPANCLYCPVFGVRPAGYEDALDRERREVVNERVRLWYVAATRARETLVLPRFPEPSDR 865 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DEWIAYEWSTHHPENTPLEREETIKQ 732 + + R+ + +E +++ R I Sbjct: 866 TSWASVIALGLDAVPAIDLGRLPLRPMVAVTETLNEQTREVFTSEAATVARHRRLTWIVP 925 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792 D+ +P + + ++ RG +IHKLL+ Sbjct: 926 SRDDAPVPGFEDAGSEPLPVPTETVS---------------APPQGGRERGTVIHKLLEE 970 Query: 793 IFTLPEHKRK--NFITSYCT------KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844 I T +R + + A + ++ + R L P + Sbjct: 971 ILTGELDERDGLEARARFLAGHLGPCEADGRPAALDPADIAACVARALALPQVAGI-RER 1029 Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQQNI--FIFEYKTHHHVPQEIEHIPYTHIA 902 +EV V +++ +G D ++ ++ + ++K+ ++ + A Sbjct: 1030 LRAEVPVYAYEALDEEERATAGVADALACDERGQPDVVVDWKSDVAPGKDA---LLGYRA 1086 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938 Q++ Y L+++V++ V + Sbjct: 1087 QVARYLAATGARL------GLIVFVTDGTVVSVTPA 1116 >gi|256844677|ref|ZP_05550162.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN] gi|256613218|gb|EEU18422.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN] Length = 748 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 125/774 (16%), Positives = 244/774 (31%), Gaps = 142/774 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 90 FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D M ++ +A + Y+ +++ ++DF+DLI+ T L KK Sbjct: 150 KNDLLD--PEAFMQSASSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + + ++L+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 205 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ ++ +K ++L ++RST IL+ + V +N + Sbjct: 255 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + Q+ ++ + A Sbjct: 309 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + K + KD +L R + + I Sbjct: 334 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D IKD+MA + + + D +S ++ +P + K+ T E Sbjct: 381 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLITFADENHYN 440 Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + K + + I AQ + IL + Sbjct: 441 ILDAMGHVAESSINTRAAKKLSDFGTKLRDAITYAQNGTVTGLTEKILTDFDYTDALRAE 500 Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 E ++ LDEFL+ T R E++ + L + ++E+ N+ Sbjct: 501 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 558 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F + Sbjct: 559 VALMTLHAAKGLEFPVVFLIGMEDGLFPLQ------------------------------ 588 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688 + + EE RL YVG+TRA +L + + + + + D + + Sbjct: 589 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 644 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + E +K++ + + + E ++ + Sbjct: 645 DLHKEENEKLQSSFTQSSFEKQTAPFARKAERARAEVYTAKKASGAIGAEKKGW 698 >gi|110799297|ref|YP_694494.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC 13124] gi|122959147|sp|Q0TV46|ADDA_CLOP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|110673944|gb|ABG82931.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC 13124] Length = 1271 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 124/656 (18%), Positives = 226/656 (34%), Gaps = 55/656 (8%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 F L S + + + +S + E L+ + E KM+ Sbjct: 279 ASFGRLKSVRKASVDDERALEKAKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178 L + Y + K++ +LDF DL ++L +D + + + + Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFE 398 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P+ L Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296 + ++ I L +FRS +I+ V+ +F + L D + Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507 Query: 297 HRSSRIGQVGTVQLWEQVVSQHD-------------SQCNPQQESWTSYFDSLPQESSAS 343 +S E + + N + + S Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKEYRDDDELGEEEEDLDSIQ 567 Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR I I ++ + GK R I+ KDI++L+R K+ Sbjct: 568 LEARIIGKKIKELMNPEDGSHYMVFDKDLGKYRRIKYKDIVILLRATKNWA---ETFVDE 624 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ + Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684 Query: 457 CTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + Y + + K ++ + Y+++ A + +F + Sbjct: 685 RLLNKDKYFFEIIKEVVDGIYDESISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562 G + L + E S+ L I+ + Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + K + K + E R+LYV TRA ++LII + + N Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENW 920 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 19/187 (10%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144 Query: 829 TRLLENPMMTTAM-----SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + + Y E+ +I ++ + + G ID Sbjct: 1145 QKFFKSDLGQRMLNSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + +YKT + E E + Q+++Y+ L + L K Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1264 Query: 932 VFIIPQN 938 I + Sbjct: 1265 ELKISKE 1271 >gi|331702041|ref|YP_004399000.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL B-30929] gi|329129384|gb|AEB73937.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL B-30929] Length = 744 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 113/767 (14%), Positives = 234/767 (30%), Gaps = 138/767 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + + + ++ L Sbjct: 30 GAGSGKTRVLTHRIAYIIEHNHIMPWRILAITFTNKAAREMRERVSKLLGEGGNDVWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKI 110 F L F + Q+ ++ + + + D K+ + Sbjct: 90 FHALCVRILRRHIDLLGYNKAFTIADTSEQRTLVKRVLRDLNIDPKKFDPRAVLSAISNA 149 Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K ++ A + + Y+ K+N LDF+DLI+ T L + Sbjct: 150 KNDLLTPKAFKAQANSAFDQIVADVYDRYQAELKQNQSLDFDDLIMITIQLFDEHPD--- 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ ++ +L + R + VGD QSIY Sbjct: 207 VLESYQDKFQYIHVDEYQDTNEAQYRLVNTLAK----------KNRNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L K+ + L ++RST +L + V + +N + Sbjct: 257 WRGANMQNILDFKKDYP--------DAHVTLLEQNYRSTKTVLDAANSVIAHNDNRADKN 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW Q S+ + + + AR Sbjct: 309 ---------------------LW-------TENPKGDQISYY-------RGQTENDEARY 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + +L R + +I I Sbjct: 334 VVAKIQEEMAK---------PKRNYGSFAILYRTNAQSRVIEETL----LKSNIPYTMVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I+D ++ + + D +SF ++ P + I ++ ++ Sbjct: 381 GHKFYDRKEIRDALSYLTLLANPNDSMSFERVINEPKRGIGQASIERLRLFANDHQWSLL 440 Query: 468 EYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 E + + + + + + + S + IL + Sbjct: 441 EAAKNVDLANEISTRAKNSIAEFEQTMRTISEKMAQLSITEITEEILDKSGYLSTLKASK 500 Query: 522 GNEVI---DVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIM 575 E + L+EF++ T + E + Q L++ L + ++++V +M Sbjct: 501 SLEAQTRLENLEEFISVTQKYDEENEGETGQQNLVNFLSDLALVSDQDSLEEDNSQVTLM 560 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVVFL+ +F Sbjct: 561 TLHAAKGLEFPVVFLMGMEEGLFPLS---------------------------------- 586 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV-----YDSFH 690 +S +E RL YVG+TRA ++L I + + V Sbjct: 587 RAAADESELQEERRLAYVGITRAKEKLYITNAYSRMLYGRRQNNPESRFVNEISPELIHS 646 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737 ++++ + L+ ++ A + P + + + Sbjct: 647 DNQQQTESPLSTPFDRRTRRATATTYRRPGKVVESPKGSGADKLAWA 693 >gi|328957498|ref|YP_004374884.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4] gi|328673822|gb|AEB29868.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4] Length = 1268 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 112/624 (17%), Positives = 206/624 (33%), Gaps = 43/624 (6%) Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134 T + + + + + ++L + + Sbjct: 302 TDEAIKETAEEMKGLRDQYKARFKELANDYFSASPQEQIDLMLSAAPLVEEMARVTQLFT 361 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSL 190 + + K + +LDF DL T +L + + WI + +++DE QD + Sbjct: 362 EAFRQRKDERNLLDFNDLEHLTLQILAQFNEENWIPTEASKHYRDKFKEVMVDEYQDINQ 421 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q ++R L D S LF VGD KQSIYSF A+P L++ + Sbjct: 422 LQENILRWLAHD-------QSDQGNLFMVGDVKQSIYSFRLADPGLFLKKYEQYE----- 469 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 Q I L +FRS ++L + VF + D + G + Sbjct: 470 HHQLGERIILAENFRSRGEVLQFTNLVFEQLMDKAVGQMDYDEAAKLVQGFTGFPELQKH 529 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR--RIAYTISNMIGTDTIFSNGK- 367 +++ + + E + + + I +I T + + Sbjct: 530 QPELLIYEKGTNDTEDEEEETESVNWDMRIEDKTEGELLMVGQKIQELIQTQFPIYDKRA 589 Query: 368 --KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 R I +DI++L +K+ + + I + ND I +M+L Sbjct: 590 KTTRPINYRDIVLLTPTKKN----NLVLMEMFKRLAIPLQVNDTQNYFQTTEITIMMSLL 645 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------------EYIQKF 473 + I + D+ +L+SPL E+++ I + + E +F Sbjct: 646 KVIDNPYQDIPLAAVLRSPLVGLDENELASIRISQKTGDYFDALKTFYQSYPGVEKASRF 705 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEF 532 + K + +++ IA+ I G + L Sbjct: 706 TSNLYGKIDMFLTRLNKWREIARRDHLVALIWTIYDDTGFLDYVGGMSSGKQRKANLHAL 765 Query: 533 LNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 E+ S+ L + + +E+ A S + N VR+MT+H +KGLE PV Sbjct: 766 YERASSYEKTSFKGLFQFVRFIEKMQEKDKDLAEPTAISEDENAVRVMTIHASKGLEFPV 825 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF++D + K + + + L K E Sbjct: 826 VFVLDLTKKFNLQDIKKSYIFNEQYGVGTDFKDLDRRIRYPSLPEIALKVEKKTKLLSEE 885 Query: 648 NRLLYVGMTRASDQLIICKHSNTS 671 R LYV +TRA ++L + Sbjct: 886 MRKLYVALTRAEEKLFLVGSYKDE 909 Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 17/204 (8%) Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITS 807 DIN+P N +T + + L+ G H ++Q I T P + + + Sbjct: 1064 DINQPRNRNRYVEETLDRPLFMAELTAPSNAEIGTATHSVMQAIDLSTAPTKETLETLIA 1123 Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA--MSCDSYSEVSVSGKINCP------- 858 KN L K + + + S D + E S + Sbjct: 1124 SLIKNGVLKEDVASKVNVEQVEEFFTTVLGKMIIDFSKDVHREEPFSLLLEAEKLFTDMN 1183 Query: 859 ---KKDIIISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILK 912 + I+I G ID + +I +F+YKT Q E + + Q+++Y L+ Sbjct: 1184 GDAEDKILIHGIIDGYIELEDHIVLFDYKTDRVSHYGSQSGEKMLEKYKGQMNLYRSALE 1243 Query: 913 DSYPNKSLVCLLIYVSEPKVFIIP 936 K L + ++ +P Sbjct: 1244 SILDKKVTETYLCLLDTGEIISVP 1267 >gi|74316051|ref|YP_313791.1| DNA helicase/exodeoxyribonuclease V subunit A [Thiobacillus denitrificans ATCC 25259] gi|74055546|gb|AAZ95986.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 1089 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 147/948 (15%), Positives = 294/948 (31%), Gaps = 111/948 (11%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E W P + + ++E G+ T KKA +++A + + L Sbjct: 224 SELDADPVAAFWADPALRAR--VGRLGEALEKGSETERKKALAIREAIDAADVVQ----L 277 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT----YKMFKSTLA 125 L + + + + ++ + Sbjct: 278 RGLILKKDGERLAKKANASTLAALGAEADTFLRDYASVEDALEALARHQTDLRIRELNRH 337 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 L L L Y++AK++ V+DF D LL + + + K+D H+L+DE Sbjct: 338 GLLLGHALFTAYQDAKRRQGVIDFADAEWLGCQLLMSEEYAPALAMKLDARYRHLLLDEF 397 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +QW+ + + + G S T+F VGD KQ+IY F E + Sbjct: 398 QDTNPLQWQALSTWLLEARGG----GSEMTVFMVGDPKQAIYRFRRGEARVFDAATDFLH 453 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + ++ R ++ ++ VF+ RH + Sbjct: 454 SHFEA-----ARFSTDMTRRLAPPVVAALNPVFAGVTGF--------AEHRHAPQNAERP 500 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFS 364 G +++ V + + + + + ++ AR A T+ ++G + Sbjct: 501 GALRVLPLQVEKTEPVTAGGLRNPLTTARTEAEDRVVDEEARVFARTLRDEILGRWGVID 560 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 G R +D++ LV+KR + +I + + R L + L +DL+AL Sbjct: 561 KGTSRAAAPRDVIALVKKRTHLHVYERELEA----ARIPYITSRRGGLLNALEARDLVAL 616 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---QRHETETVYEYIQKFANCGISKF 481 +L DL +LKSP+F+ S+DD+ + A ++ Sbjct: 617 IECLLLPHADLKLAHVLKSPIFDCSDDDLLSVFAPQPDAGARGWERLLALAEAPHATAEA 676 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTL 537 + + HD I ++ + +V L F+ L Sbjct: 677 ARAARLLPRWRERCGTLPVHDLLDHIYCEGDVEARYAAAVPPARRPQVEANLRAFMQLAL 736 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVHTAKGLESPVVFLVD 592 + Y +L + EL + + VR++T+H AKGLE+P+V+L+ Sbjct: 737 TQDAGRYPTLAGFVRELASLIDDADASPDEGLAADGADAVRLLTIHGAKGLEAPIVWLLG 796 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 + + + P P + R K + E + LLY Sbjct: 797 GSDRP-HGESYGVLAPWPPDAPAPLHFSLFGKQDERGAGRQGSFDEEKTLAEREADNLLY 855 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA LI+ + + W V ++H + + + Sbjct: 856 VALTRAEQALIVSG--------DAGKNAWVQRVEAAWHALDLPADLPVAAEAGTHNIELR 907 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 P + + L Sbjct: 908 TPIEAPPIGRRVASPGHNAAAASGEFFHACLEVHAPPGAPRKLAEL-------------- 953 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 +H L+ + + + + Sbjct: 954 ------------AMHLGLER----EHARIEAEARALLAR--------------------- 976 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH-HHVPQ 891 P + Y + + R D++ + +++ +YK Sbjct: 977 --PELAHLFDPARYRRAYNELALLDRDGRLQ---RADRVVEGEDAVWLVDYKMGEQSRLL 1031 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 + H AQL+ Y +L YP+K + +L+ +++ ++ + + Sbjct: 1032 SDTALAEAHRAQLAGYRSLLAALYPHKPVHAVLL-LADGRLVEVDTDV 1078 >gi|168576188|ref|ZP_02722082.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016] gi|183577923|gb|EDT98451.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016] Length = 763 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 103/592 (17%), Positives = 192/592 (32%), Gaps = 122/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ K Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL V ++V +N + + Sbjct: 272 -------AKVVLLEENYRSTKTILQVANEVIKNNKNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D L + A +A TI + + Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL R + I I I+D++A Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNILYTMVGGTKFYSRKEIRDIIAYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L S + +L ++ E ++ ++EFL+ T Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T + + V +MT+H AKGLE PVVFL Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + VF EE RL Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652 >gi|29346067|ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29337961|gb|AAO75764.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 788 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 103/683 (15%), Positives = 207/683 (30%), Gaps = 124/683 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL++ T L + + + ++ ++L+D Sbjct: 170 AAKVPAVREIYTRYWERCRQAGAMDFDDLLVYTYILFRDFPE---VLARYREQFRYVLVD 226 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L ++ Sbjct: 227 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKV 276 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E S Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 317 ---------------EKERGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 349 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R + IKD++A Sbjct: 350 -----HSYGYADFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 400 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + +++ + + Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATENGVSLWAALCEPLSYGLNINK 460 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I + S ++ T I+ E + ++E Sbjct: 461 GTHTKLQGFRELIEGFMTDQVDKSAYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEEL 520 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + ++ +MTVH+AKGLE Sbjct: 521 VNGMNDFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 579 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 580 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 605 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + I K + + D N R+ + Sbjct: 606 ERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGSPSRFLRDIDVNYLRLPHEAGVSRSVD 665 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + T + K + S + Sbjct: 666 EGAGRFRREIEGGFTRAASPTRTPYGTKFSDRERPKAQVIAPTVPKNLKKV--SAVSGSS 723 Query: 767 KTNLESLLSDNQTFNRGLII-HK 788 + + + G +I H+ Sbjct: 724 IRSASAGSASVTGVQAGQMIEHE 746 >gi|253568515|ref|ZP_04845926.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6] gi|251842588|gb|EES70668.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6] Length = 788 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 103/683 (15%), Positives = 207/683 (30%), Gaps = 124/683 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL++ T L + + + ++ ++L+D Sbjct: 170 AAKVPAVREIYTRYWERCRQAGAMDFDDLLVYTYILFRDFPE---VLARYREQFRYVLVD 226 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L ++ Sbjct: 227 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKV 276 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E S Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 317 ---------------EKERGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 349 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R + IKD++A Sbjct: 350 -----HSYGYADFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 400 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + +++ + + Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATENGVSLWAALCEPLSYGLNINK 460 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I + S ++ T I+ E + ++E Sbjct: 461 GTHTKLQGFRELIEGFMTDQVDKSAYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEEL 520 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + ++ +MTVH+AKGLE Sbjct: 521 VNGMNDFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 579 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 580 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 605 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + I K + + D N R+ + Sbjct: 606 ERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGSPSRFLRDIDVNYLRLPHEAGVSRSVD 665 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + T + K + S + Sbjct: 666 EGAGRFRREIEGGFTRAASPTRTPYGTKFSDRERPKAQVIAPTVPKNLKKV--SAVSGSS 723 Query: 767 KTNLESLLSDNQTFNRGLII-HK 788 + + + G +I H+ Sbjct: 724 IRSASAGSASVTGVQAGQMIEHE 746 >gi|169824265|ref|YP_001691876.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328] gi|167831070|dbj|BAG07986.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328] Length = 725 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 99/577 (17%), Positives = 178/577 (30%), Gaps = 122/577 (21%) Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ T L YE K+ LDF+DLI+ TN L ++ Sbjct: 145 RLKNAGATEKNIDKEDFDISLSTFTMELFQKYEHKLKRYNSLDFDDLIVKTNLLFEENPD 204 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R K ++ +DE QDT+ Q+++I++L S + VGD QS Sbjct: 205 ---LREKYSDRFKYVFVDEYQDTNDTQYKLIKNLV----------SKNDNICCVGDSDQS 251 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY + GA + + ++ + +I L ++RST IL + + V + Sbjct: 252 IYGWRGANIQNIQNFEKDFKN--------AKVILLEQNYRSTQPILDLANTVIKNNSLRK 303 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + LW ++++ + ++ + Sbjct: 304 DKN---------------------LW---TAKNEGDMPIYRRMYSDIDE----------- 328 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A ++ I + R +++ +L R + L L I Sbjct: 329 ADQVVQWIEQ----------ERYRENPYEEMAILYRTNAQSRLFEERLNRL----GIPNR 374 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 D IKD ++ R + + D+++ ++ P + + K+ Sbjct: 375 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQNRSI 434 Query: 466 VYEYI------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518 F+N K Q I + + IL R Sbjct: 435 SMMQYIIDTDLPDFSNATAKKLQEFYYLIKSFPK--DQMNVAELMEYILDKTGYRANLEK 492 Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIM 575 +R ++ +DE+++ + Q++ + L LE N V +M Sbjct: 493 STNRDDKTRLENIDEYVSSLYQFVQDNPD--KNLREYLETSSLMTDLDKTDDNTKGVSMM 550 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE VVF + Sbjct: 551 TIHAAKGLEFDVVFFTGLEEGTIPSRV--------------------------------- 577 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 EE RL YV +TRA +L I + Sbjct: 578 -----DEDVEEERRLCYVAITRARKKLYITSVQSRRR 609 >gi|255526102|ref|ZP_05393024.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296185823|ref|ZP_06854230.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|255510218|gb|EET86536.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296049651|gb|EFG89078.1| UvrD/REP helicase [Clostridium carboxidivorans P7] Length = 1112 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 143/887 (16%), Positives = 318/887 (35%), Gaps = 112/887 (12%) Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L +A + Y K K +LD++DL T +L +R + +L+DE Q Sbjct: 208 LAVALKIEEAYLNYKLKKDLLDYDDLETMTLKVLS----IKNLRERYRNRYKTLLVDEFQ 263 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ IQ ++ + D N + +F VGD KQSIY F G + + + + Sbjct: 264 DTNGIQKNILYKIAAD----DNGRLINKKIFIVGDFKQSIYGFRGTDYTIFKQVSKDIEN 319 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVF----------SIPENAQGLSEDSTTTIR 296 + L +RS ++I+ ++ +F P++ + + Sbjct: 320 E----------VSLSTCYRSKSEIIKGINSIFNELIDGYQPLKCPKDEEIKEKRIKLLTY 369 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISN 355 + R ++ + + + Q++ + DS + + I Sbjct: 370 EKIRRTSDNVYTEVKNMLQGKESKKFENIQQALKALKDSNKDITVKKNKEGMAVIKAIKI 429 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + + ++ KDI +LVR R P I + + Sbjct: 430 LRD----------KNLEFKDICILVRSRSVIPDIEEELK----RRNVPYCIIGGVGFYQK 475 Query: 416 LAIKDLMALGRFIL-------SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETV 466 + +++ L + I+ + E++ +F+ +L+ LF S+D + K+ ++ E+ E + Sbjct: 476 AEVDEILNLYKVIVRGFSGEFTYEENKNFIQVLRGSLFEISDDTLLKMNIEKEESSLENL 535 Query: 467 YEYIQKFAN-CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNE 524 YE ++ + + K + + + +L + + S I+ + G + Sbjct: 536 YEALKVYEDGMHSEKLLNTVTILEKLAGLKEKLSVVQIIQAIIKECNVFEIMLCQDNGLQ 595 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHT 579 +++ L + ++ +L++ ++ + + V+IMT+H Sbjct: 596 KFRNIEKLLQEAEKFDREQLFTLEQFVNYINLLDEENGDDSEAALDTEDSEAVKIMTIHQ 655 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 +KGLE V + S + S K +++ + N + + + + Sbjct: 656 SKGLEFKGVIIPKIHSDLLSMSKKDKPNLVYNKNSIILSKD-LENVELTTPEYEEYLNSK 714 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICK--------HSNTSNEKKSNQRTWYDMVYDSFH- 690 + EE RLLYV MTRA D +I+ +K ++ + SF Sbjct: 715 LEKEIEETERLLYVAMTRAEDYVILTGGDDGKDPTPIKDETDKIKELNSFLKQLKYSFTV 774 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--------KQLMDEQKIPKK 742 + + I+ NS + ++ + + + +E++ + + K Sbjct: 775 GNADKELIEFINSDDIEDLEVIKRKISKVQIDKEKLQESLNYKGNIKNYASVSATRYMKY 834 Query: 743 LFSPIKNDINEPYILNPST-IDTKGKTNLESLLSDNQTF--------------------- 780 L P + + +N I+ + K ++ L+++ Sbjct: 835 LKCPRRFYLESVLNINGKDYIEKENKHDIAEFLAEDTAKMEVEDIEQKTEYKLSQSISAS 894 Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT--RLLENPMMT 838 G +H +++ + K+ I + K + L + +LLE + Sbjct: 895 TIGTAVHSIIENLNNEVSIDEKDIIKAAAEKYELNYVDGIENKLKHYVEGYKLLEKEKSS 954 Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI--SISQQNI--FIFEYKTHHH-VPQEI 893 ++E+ S + ISG ID++ I +YKT+ ++I Sbjct: 955 YGSLVSKFNELDYSLS-QMEHRKTSISGFIDRLEIFQKDGKYTAVITDYKTNFIYGNRKI 1013 Query: 894 EHIPYTHIAQLSIYEKILKDS-----YPNKSLVCLLIYVSEPKVFII 935 + + + Q+ +Y K +K+ + + ++ L ++ P+ I Sbjct: 1014 KELTAAYELQMLLYGKAVKELLYVKGFKVEEIILELYFLDVPERVQI 1060 >gi|289178716|gb|ADC85962.1| PcrA [Bifidobacterium animalis subsp. lactis BB-12] Length = 1037 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 105/653 (16%), Positives = 209/653 (32%), Gaps = 117/653 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKSTLASLTLAKYLNAHYE 138 K + I + D K +L + + F + F + + A Y+ Sbjct: 274 KRFTPRSILARISDYKNQLTDASTALAQYAPDFKPGMRHYSFGQIGDPEPVYAVVYAEYQ 333 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 +DF+DLI+ T +LL+ + + + +IL+DE QDT+ Q+ ++R Sbjct: 334 YRLALANAVDFDDLIVRTVELLRTQPH---VAEYYRHKFRYILVDEYQDTNHAQYVLVRE 390 Query: 199 LTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 L D + S P + VGD QSIY+F GA+ + + ++ Sbjct: 391 LAGVDAHEPSDPMATEAGKSGPAWVTVVGDSDQSIYAFRGADIRNIQDFEKDFP------ 444 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL + V + + LW Sbjct: 445 --DARTIMLEQNYRSTQTILDAANAVIAHNSARKPKK---------------------LW 481 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + + +A + A IA I ++ + + Sbjct: 482 TAL------GEGDKIIGYAA--------DTAQLEAHWIAQQILHLHEE---------KGL 518 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ ++ R + + I + +KD +A + I++ Sbjct: 519 PYSDMAIMYRANAQSRSLEEGL----IQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNP 574 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN------CGISKFQHV 484 DD++ +L P ++ +T + I++ + + + Sbjct: 575 ADDINMRRILNVPKRGLGTRAESQLTLFANEHNQTFWWAIEQLEDIEGMSARTANAVRAF 634 Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + L A P + +L + + ++ L + + Sbjct: 635 RELMTSLRTFAGEHDSKPSEIVAQVLEQSHMLELLRKSEDPQDESRVENLSQLQSVAAEF 694 Query: 540 EQNSYS-SLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 EQN+ +L + + + + +V +MT+HTAKGLE P+VFL Sbjct: 695 EQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTLHTAKGLEYPIVFLTGMEQGT 754 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H E RL YVG+TR Sbjct: 755 FPHS----------------------------------RAMENMDELSEERRLAYVGITR 780 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 A +L + + + + + ++ + + + K+ + + W Sbjct: 781 AKRRLYLTRAAVRAQWGRQSEMMPSQFLDEIPDSLIDWKRREAGMERMRSGWR 833 >gi|322383647|ref|ZP_08057398.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151859|gb|EFX44802.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1350 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 128/830 (15%), Positives = 268/830 (32%), Gaps = 89/830 (10%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQ 54 R G L+ + I D+ + + + + G P + L+ TL Sbjct: 242 RREGPDLSLWQQSILHDVLLELKGAKNLLQQAKLWTEAPGGPLPYLATLDSDLELINTLL 301 Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +A++ E + + + + + + +E+ + + ++K + + Sbjct: 302 EAAEN-SWEAAYRAFQTAVFGKLKPCRGDDLDKELQEAVKQARNEVKDAVFRIKEEIFTR 360 Query: 115 -------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--- 164 + + L Y+++K+ ++DF DL +L+ + Sbjct: 361 TQEEYKDELKRTAPVLHHLVRLVIDFAERYQQSKEDKGLVDFADLEHYCLAILRSEESTP 420 Query: 165 ---VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + + ++ +L+DE QDT+ +Q ++ ++++ P F VGD Sbjct: 421 ERMIPSSAALDYQEQFAEVLLDEYQDTNRVQESIVSLISKEA---------PGNRFMVGD 471 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 KQSIY F AEP L + + G ++L +FRS ++ V+ +F Sbjct: 472 VKQSIYRFRLAEPGLFLSKYKSYTTSGEGEG---KRVDLARNFRSRRQVVDAVNFLFRQI 528 Query: 282 --ENAQGLSEDSTTTIRHRSSRIGQVG--TVQLWEQVVSQHDSQCNPQQESWTSYFD--- 334 E+ ++ D + ++ +V++ S + + + Sbjct: 529 MQESVGEIAYDIRAELVTGANYPETGQDLSVEMMLVDRSAEEQDEFTAKGFGEDEAEPEM 588 Query: 335 ----------SLPQESSASILARRIAYTISNMIGTDT--------IFSNGKKRVIQAKDI 376 + +A + AR IA I ++GT+ G+ R +DI Sbjct: 589 ASEPAASLEFEAAELETAQLEARAIALKIRRLLGTEEGVRPFQVFDKRTGELRPATFRDI 648 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 ++L+R + + I + ++ +++L + I + D+ Sbjct: 649 VILLRATQQWAPV---LMEELKQQGIPAYADLNTGYFSATEVEIMLSLLKTIDNPAQDIP 705 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI---------------------QKFAN 475 F +L+SP+ + DD+ +I F Sbjct: 706 FAAVLRSPVVQLNADDLAQIRIAGPGLSFYDAAYLYANGQTAEGALSQAIQPAVSWSFKP 765 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLN 534 K + + A+ + D I G + L + Sbjct: 766 EVQQKLLLFLDRLESWRSEARQGALADLIWNIYRETGFYDYVGGMPGGLQRQANLRALYD 825 Query: 535 FTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + E S L + +E+ R+ + VRIM++H +KGLE PVVF Sbjct: 826 RARQYESTSLRGLFRFLRFVERMKETGGDLGTARSLGEQEDVVRIMSIHKSKGLEFPVVF 885 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 + I L P + + + + +K E R Sbjct: 886 VAGLAKIFNQRDTSGSFLIHKELGFGPKYLDPDLRVSYPTLPMLAIRRRMKLELLAEEMR 945 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 +LYV +TRA ++L + ++++ S+ + + S +DE + + I Sbjct: 946 VLYVALTRAREKLFLLGTVKSADKLLSSWSRYLGLGTWSLPDDEVARARSYLDWIGPSLI 1005 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + + + D + SP N L Sbjct: 1006 RHRDAEGWRKRIGLEGAKLSPSLAGDPSVWSFTILSPSLLSQNLAEELKA 1055 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 19/208 (9%) Query: 747 IKNDINEPYILNPSTID-----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801 ++ + + ++P + + K RG ++H ++Q + Sbjct: 1142 MRPQVRKDRKMSPQAVPGTIQTSLKKRPRFMEEKKPTPAERGSVVHAVMQNMPLHETPTL 1201 Query: 802 KNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCP 858 + + + L A+ I + + + + D EV S + P Sbjct: 1202 SSVRQTLDKMLRLELLTTAQCETVPEEEILQFFQTSVGKRMVKADWVKREVPFSLGLPAP 1261 Query: 859 K-----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 + ++I G ID + ++ + + +YKT ++E + + QL +Y Sbjct: 1262 EVYPDIGYNGARDIVLIQGIIDCLFEDEEGLVMLDYKTDAVWQNDLEKLKDRYRLQLQLY 1321 Query: 908 EKILKDSYPNKSLVCLLIYVSEPKVFII 935 + +++ + L + + + Sbjct: 1322 ARAVEEIWKRAPRQKYLYFFDGAHIVEL 1349 >gi|325262187|ref|ZP_08128925.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5] gi|324033641|gb|EGB94918.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5] Length = 741 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 114/729 (15%), Positives = 219/729 (30%), Gaps = 136/729 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 27 GAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDNLVGFGSESIWVST 86 Query: 66 FS---------LLSSFFLTQKFTPQKNIITQEINKKSPDLKE------KLKKSQDEFIKI 110 F + FT + + K L + K + Sbjct: 87 FHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLMKDVCKLIDIDTKVYKERSLLGAISSA 146 Query: 111 RDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +D + + ++ A + YE+ + N LDF+DL++ T L + + Sbjct: 147 KDELISPEEYELNTAGDYGKQKIAKVYREYEKQLRANNALDFDDLLVKTVQLFQTQPD-- 204 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I++DE QDT+ +Q++ + L + + L VGD+ QSIY Sbjct: 205 -VLENYQERFRYIMVDEYQDTNTVQFKFVSLLAGKY----------KNLCVVGDDDQSIY 253 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA K +L ++ Q +I+L ++RST++IL + V S + Sbjct: 254 KFRGANIKNILNFEQEFQ--------DARVIKLEQNYRSTSNILNAANAVISNNCGRKDK 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW ++ + + + A Sbjct: 306 T---------------------LW-------TDNGEGEKIQLRQFDTAYDE-------AD 330 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 IA I N + D +L R + L I Sbjct: 331 FIAEDIRNHTREGS----------TYNDHAILYRTNAQSRLFEERFVA----SNIPYKIV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETV 466 IKDL++ + I + +DDL+ ++ P I ++ Sbjct: 377 GGVNFYARREIKDLLSYLKTIDNGKDDLAVRRIINVPKRGIGLTTINRVQESALEREIGF 436 Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 YE ++ +K + I AQ S D I+ + + Sbjct: 437 YEALRGLDLIPNIGRSAAKLDSFVALIEYFKTRAQEDSISDLMKEIIEKTGYVENLEAED 496 Query: 522 GNEVI---DVLDEFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + + +DE L+ E Q+ +L + E+ + N + V Sbjct: 497 KEDAQARIENIDELLSKIAAFEESCLDQDEKPTLSGFLEEVALVADID--SLDENQDYVV 554 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H+AKGLE P V+L +F + L ++ + Sbjct: 555 LMTLHSAKGLEFPHVYLAGMEDGLFPSYMTITSDDIEELEEERRL--------------- 599 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 YVG+TRA +L + ++ + + + Sbjct: 600 -----------------CYVGITRAEKELTVSCARRRMIRGETQYNKMSRFLKEIPKDLL 642 Query: 694 RVKKIKLTN 702 Sbjct: 643 ETGADFEEA 651 >gi|149927015|ref|ZP_01915273.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105] gi|149824236|gb|EDM83456.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105] Length = 1078 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 152/903 (16%), Positives = 314/903 (34%), Gaps = 106/903 (11%) Query: 1 LKNRFGLSLNES--YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58 L F + E E++ + + Q + + + + G+ ++KA L + Sbjct: 211 LNRVFEIGEGEQWPVEVLNNRHFLEQWQQAARWL-ALGTAKQQGHAVDIEKA--LTALRE 267 Query: 59 TQCIEERFSLLSSFFLTQKFTPQKNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + F L + LT K P KN Q+ D L+ + + Sbjct: 268 GAHAADVFEQLKAVCLTAKNEPSKNFFKMTAGQKTAVDETDYVRTLEGLALQTAQALQLE 327 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 ++T A L + L Y+ K + + DF+DL +L + A+++ K+D Sbjct: 328 KDQLDMQATAALAQLIEPLFDTYKSIKLEQGLCDFDDLEATALRMLMNDEQRAYMQQKLD 387 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + H+L+DE QDT+ +QW +++ +D+ ++F VGD KQSIY F AE Sbjct: 388 TRVRHLLVDEFQDTNPVQWNILKLWLQDYSG-----DDKPSVFLVGDPKQSIYRFRRAEA 442 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + + + +E + R ++ VV+ VF + Sbjct: 443 RLFNHARAWLVEHF-----AAKTLESDSTRRCARSVVDVVNAVFEPGQTRG--------Q 489 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 R+ +V + + L +E A+R+ T+ Sbjct: 490 TAFRAHTSLAGESVSTLKGLNIYPK----------------LLKEDEGPDEAQRVVQTLQ 533 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + +I +++VLVR K + R ++ D+ Sbjct: 534 QWLANGSIQ--------NLSEVMVLVRAHKSGVPLMAALRE----AGLAYTIKDKGERYT 581 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--RHETETVYEYIQK 472 D +AL F+ +L + +L+ PL S + ++T TV+ ++ Sbjct: 582 SQVWGDTIALLGFLNDPHANLHLLQLLRCPLIGLSSAQFQSLIQAGKMNQTATVWGTLEL 641 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDV 528 A + + + + E + +A+ + + ++ K +++++ R + + Sbjct: 642 LAGQCKAPWTALHAQLSEWLRMARALPLFETLSKVVADTKASEKYLNSASPRQRVMMAEH 701 Query: 529 LDEFLNFTLRNEQNSYSSLQELISE---LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 D + L + + LQ+ E L+ Y + + N + +RIMTVH+AKGLE+ Sbjct: 702 WDWLKAWALGLNKGRFPGLQQAFDEAVKLQTYASSDSEGAANNPDVLRIMTVHSAKGLEA 761 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS-DLIKHLKKSTQ 644 V+L D S + I +L + + + + + + +++ Sbjct: 762 NHVWLFDANSSPKPGGSNAGLLIDWALGESHPKSVTVMGNLGNPSPGRAAAQQIEQQAYA 821 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 +E + LLYV +TRA + + K +++ + Sbjct: 822 DEEDHLLYVALTRARHSIHLSGSEKRGASKG------------------WYERLLPFATQ 863 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 W + +T P + + L D + + P+ N ++ P + + Sbjct: 864 VHSTWPMPQGATQWPG------QAELAGLFDPPALWVRPQFPVLNALSAPVGNVVPRLAS 917 Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE---HKRKNFITSYCTKNAKLWPAKEY 821 +G H L+ + L E + C + E Sbjct: 918 PE-------------LRKGTAWHAALEWVDELAETPFDAWWAKVAVRCEAVFRPLRDDEL 964 Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881 +++ + L+ + + + SV ++ D S R D++ + Sbjct: 965 QHVEQACRLLVNKGDLQPWLQGAVANNHSVFNELEWVLGDGR-SLRADRVLELPDRFLVL 1023 Query: 882 EYK 884 +YK Sbjct: 1024 DYK 1026 >gi|189501505|ref|YP_001957222.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2] gi|189496946|gb|ACE05493.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2] Length = 757 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 93/580 (16%), Positives = 191/580 (32%), Gaps = 113/580 (19%) Query: 96 LKEKLKKSQDEFIKIRDRFNT-YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 + ++ +++ I ++ N A + Y + + +DF+D+++ Sbjct: 140 VLSRISSAKNRLITAQEYINNPIYQQDDEEAMKPKVGEIYVQYAKRCLQAGAMDFDDILL 199 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 NT LL + I YK + +ILIDE QDT+L Q+ +++ L + Sbjct: 200 NTYLLLNQH---LDILYKYQERFQYILIDEFQDTNLAQYAIVKDLAG----------IHK 246 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + VGD+ QSIY+F GA + +L ++ +II+L ++RST +I+ Sbjct: 247 NICVVGDDAQSIYAFRGANIRNILNFEKDYPN--------LTIIKLEQNYRSTQNIVEAA 298 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + + + ++ + G V + + + Sbjct: 299 NGIIRNNQLQ----------LKKNVWTANEKGEVIGLIRATTDAEEG------------- 335 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 R +A +I + + ++ +D +L R + I R Sbjct: 336 ------------RLVAASIFEI---------KMQNQLRNEDFAILYRTNSQSRAIEEALR 374 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + +KDL+A RFI++ D+ + ++ P +I Sbjct: 375 ----KINLPYRMLGGTSFYQRKEVKDLLAYLRFIVNHNDEEALKRIINEPKRGIGPSNIE 430 Query: 455 KI-CTQRHETETVYEYIQK----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 K+ ++E + + + I + ++ + I Sbjct: 431 KMVVAASDHGIPLWEVMCNAKNFLSGRVAEAVEEFAHMIQAMALDLTKKDAYEIASEIAK 490 Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + E + + E L+ N L + L+ + Sbjct: 491 RSGLLKSLYEDKTVEGLARYENVQELLSGIKAFTANPEQVDTSLATFLQDVALATNNENE 550 Query: 567 AN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + +++ +MT+H AKGLE V++V +F + Sbjct: 551 EDGEDKISLMTIHAAKGLEFKYVYIVGIEEDLFPSSMMLGS------------------- 591 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + EE RL YV +TRA ++ + Sbjct: 592 ---------------REDLEEERRLFYVALTRAQKKVFLS 616 >gi|304317509|ref|YP_003852654.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779011|gb|ADL69570.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 716 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 104/554 (18%), Positives = 184/554 (33%), Gaps = 113/554 (20%) Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 LDF+D+II T +L KK + I + +I++DE QDT+ Q+E + L + + Sbjct: 183 NALDFDDIIIKTIELFKKDEG---ILRYYQDKFRYIMVDEYQDTNRPQYEFVNLLAKRY- 238 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 R L VGD+ QSIY + GA+ K +L ++ + +I+L ++ Sbjct: 239 ---------RNLCVVGDDDQSIYGWRGADIKNILDFEKDYP--------EAKVIKLEQNY 281 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RST IL + V + QLW + Sbjct: 282 RSTQIILDAANNVIDNNIKRKKK---------------------QLW-------TDNKDG 313 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 ++ + + A I I ++I + D +L R Sbjct: 314 EKIIVCEVQNEREE-------ANFIIDRIKDLIANGR----------KYSDFAILYRTNA 356 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + + I D IKD++A R +++ DD+S ++ P Sbjct: 357 QSRIFEEA----CMMNDIPYKLVGALRFYDRKEIKDIIAYLRILVNPYDDVSLKRIINVP 412 Query: 445 LFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSPH 501 E + + R ++Y I G ++ + +I +LI+ F + Sbjct: 413 KRGIGESTVSALEQYAREHDTSMYFAIPDVELKGRARKVLDNFKNFIDDLINQLDFMNII 472 Query: 502 DFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQY 557 + IL + + E I+ ++EF+ E + SL+ +S + Sbjct: 473 EVIDYILEKTGYMDELKADDTKESESRIENINEFIGAAREFMETSEDKSLESFLSGITLV 532 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 V +MT+H+AKGLE PVVF+ +F Sbjct: 533 SDIDTAGDI--GESVVLMTLHSAKGLEFPVVFMAGMEEGIFPSSMSFIDEHELEEERRL- 589 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 YVG+TRA ++L + + K Sbjct: 590 ---------------------------------CYVGITRAKERLFMTYARTRNLYGKPQ 616 Query: 678 QRTWYDMVYDSFHN 691 T + + + Sbjct: 617 YNTASRFINEIPQD 630 >gi|209559530|ref|YP_002286002.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131] gi|209540731|gb|ACI61307.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131] Length = 772 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 115/648 (17%), Positives = 203/648 (31%), Gaps = 123/648 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L D + + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++I+ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + +L S D +L + E I+ ++EFL+ T Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + K + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 + E T + L ++ + + + + Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQTQVRQSAQPMQAHTIPSASTSSV 708 >gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51] gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 760 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 115/627 (18%), Positives = 202/627 (32%), Gaps = 131/627 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A+ + Y++ N LDF+D+I+ T L ++ + + + +IL+DE QDT+ Sbjct: 173 AERVYELYQKKLLANNALDFDDIIMLTVRLFRENPE---VLSQYQDKFRYILVDEYQDTN 229 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++ L + + R L VGD+ QSIY F GA+ + +L +R + Sbjct: 230 HAQYALVNLLAKKY----------RNLCVVGDDDQSIYMFRGADVQNILDFERDYPE--- 276 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++L ++RST IL + V + + S Sbjct: 277 -----AKTLKLEQNYRSTKSILQAANSVVQNNRSRKEKS--------------------- 310 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + Q + + + AR + I ++ Sbjct: 311 LW-------TENEDGQPIVYYVADNEHDE-------ARYMGERIQRLLN---------VE 347 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + + VL R + +I I + + IKD++A R + Sbjct: 348 GRKFNEFAVLYRTNAQSRVIEERF----MKEGIPYRIFSGLKFYERMEIKDILAYLRILH 403 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKFANCGISKFQ 482 + D +SF +L P E + KI +E E +YI + + Sbjct: 404 NPADQVSFSRVLNVPKRGLGESTLEKILDYANEQEMPVLDAIMEADYIPELQSRAKKPLL 463 Query: 483 HVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + EL + A S +L +S E + L EFL+ T Sbjct: 464 AFAHLMQELRALAAAESSVTKLVEEVLKRTGYWDNLVSDKSPEAEARLENLREFLSVTAE 523 Query: 539 NEQN-------------SYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLE 584 ++ + + L LEQ + + V +MT+H+AKGLE Sbjct: 524 YDEKADNYETAVVQEGIEDALVPGLAGFLEQVSLVAQIDSLDQADDAVVMMTIHSAKGLE 583 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVFL +F ++ Sbjct: 584 FPVVFLGGMEEGIFPSSRSMLDPVL----------------------------------L 609 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E RL YV +TRA ++L + + + ++ + D T Sbjct: 610 AEERRLCYVAITRARERLYLAYAQQRMLYGRTQYNRPSEFFQEIPTHVLVDRDPIDPPPT 669 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREE 728 + A +T +P E Sbjct: 670 RAQKAHSATARPAATPSGGPSPWRTGE 696 >gi|256850561|ref|ZP_05555987.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US] gi|256712584|gb|EEU27579.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US] Length = 748 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 125/774 (16%), Positives = 244/774 (31%), Gaps = 142/774 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 90 FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D M ++ +A + Y+ +++ ++DF+DLI+ T L KK Sbjct: 150 KNDLLD--PEAFMQSASSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + + ++L+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 205 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ ++ +K ++L ++RST IL+ + V +N + Sbjct: 255 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + Q+ ++ + A Sbjct: 309 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + K + KD +L R + + I Sbjct: 334 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D IKD+MA + + + D +S ++ +P + K+ T E Sbjct: 381 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLITFADENHYN 440 Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + +K + + I AQ + IL + Sbjct: 441 ILDAMGHVAESSINTRAANKLSDFGTKLRDAITYAQNGTVTGLTEKILTDFDYTDALRAE 500 Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 E ++ LDEFL+ T R E++ + L + ++E+ N+ Sbjct: 501 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 558 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F + Sbjct: 559 VALMTLHAAKGLEFPVVFLIGMEDGLFPLQ------------------------------ 588 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688 + + EE RL YVG+TRA +L + + + + + D + + Sbjct: 589 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 644 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + E +K++ + + E ++ + Sbjct: 645 DLHKEENEKLQSSFIQSSFEKQTAPFARKAERARAEVYTAKKASGAIGAEKKGW 698 >gi|295838506|ref|ZP_06825439.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB74] gi|295827027|gb|EFG65192.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB74] Length = 681 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 115/702 (16%), Positives = 221/702 (31%), Gaps = 123/702 (17%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + L++ P K + K +LK +L + + + Sbjct: 31 DAADSKRLMALVCRDLDLDP-KRFPPKSFTAKISNLKNELIDA--------EAYADEVAG 81 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 ++ A Y+ ++ LDF+D+I+ T LL+ + + H+ Sbjct: 82 EAAGAFEKTLSQAYTTYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHV 138 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHGAEPKR 236 L+DE QDT+ Q+ +++ L G P L VGD QSIY+F GA + Sbjct: 139 LVDEYQDTNHAQYTLVKELVGPADGGTGYDGGPAPEPAELCVVGDADQSIYAFRGATIRN 198 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +L+ + I L ++RST IL+ + V EN + + Sbjct: 199 ILQFEEDYPN--------AKTILLEQNYRSTQTILSAANAVIERNENRRPKN-------- 242 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW ++ P+ + + + A+ +A I + Sbjct: 243 -------------LW------TEAGNGPKITGYVADTEHDE--------AQFVADEIDRL 275 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + D+ V R + + + + + Sbjct: 276 TDAG---------DAKPGDMAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERR 322 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED---DIFKICTQRHETETVYEYIQKF 473 ++D++A R + + ED + +L P + I + + T Sbjct: 323 EVRDVLAYLRVLANPEDSVPLRRILNVPKRGIGDRSEAMIDALSQRERITFPQALRRVDE 382 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGNE---V 525 A ++ + IK + L+ + + P +L + + + Sbjct: 383 AYGMAARSANAIKRFNTLMEELRTITESGAGPAVVLEAVLERTGYLAELQASTDPQDETR 442 Query: 526 IDVLDEFLNFTLRNEQNSYS-----SLQELISELEQYPPTIKRAHSANHNEV-RIMTVHT 579 I+ L E + L EQ +L E + + + + + + V +MT+HT Sbjct: 443 IENLQELASVALEFEQERGDEEGAGTLAEFLERVALVADSDQIPDEEDGDGVITLMTLHT 502 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFL VF H Sbjct: 503 AKGLEFPVVFLTGMEDGVFPHMRALG---------------------------------- 528 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 + EE RL YVG+TRA ++L + + + S + + + + K+ Sbjct: 529 QVKELEEERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPPSRFLEEIPADHLEWKRTG 588 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + A ++ + +E+ + Sbjct: 589 AAPAKVAAGPAAGIAASLSSSRARRGAPAFATRRAEEKPVVA 630 >gi|227877012|ref|ZP_03995104.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01] gi|227863383|gb|EEJ70810.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01] Length = 753 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 125/774 (16%), Positives = 243/774 (31%), Gaps = 142/774 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 35 GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 94 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 95 FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 154 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D M ++ +A + Y+ +++ ++DF+DLI+ T L KK Sbjct: 155 KNDLLD--PEAFMQSASSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 209 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + + ++L+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 210 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 259 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ ++ +K ++L ++RST IL+ + V +N + Sbjct: 260 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 313 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + Q+ ++ + A Sbjct: 314 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 338 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + K + KD +L R + + I Sbjct: 339 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 385 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D IKD+MA + + + D +S ++ +P + K+ T E Sbjct: 386 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLITFADENHYN 445 Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + K + + I AQ + IL + Sbjct: 446 ILDAMGHVAESSINTRAAKKLSDFGTKLRDAITYAQNGTVTGLTEKILTDFDYTDALRAE 505 Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 E ++ LDEFL+ T R E++ + L + ++E+ N+ Sbjct: 506 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 563 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F + Sbjct: 564 VALMTLHAAKGLEFPVVFLIGMEYGLFPLQ------------------------------ 593 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688 + + EE RL YVG+TRA +L + + + + + D + + Sbjct: 594 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 649 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + E +K++ + + E ++ + Sbjct: 650 DLHKEENEKLQSSFIQSSFEKQTAPFARKAERARAEVYTAKKASGAIGAEKKGW 703 >gi|302380742|ref|ZP_07269207.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna ACS-171-V-Col3] gi|302311685|gb|EFK93701.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna ACS-171-V-Col3] Length = 724 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 101/577 (17%), Positives = 187/577 (32%), Gaps = 122/577 (21%) Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ T L YE K+ LDF+DLI+ TN L ++ Sbjct: 144 RLKNAGATEKNIDKEDFDISLSTFTMELFQKYEHKLKRYNSLDFDDLIVKTNLLFEENPD 203 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R K ++ +DE QDT+ Q+++I++L S + VGD QS Sbjct: 204 ---LREKYSDRFKYVFVDEYQDTNDTQYKLIKNLV----------SKNDNICCVGDSDQS 250 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY + GA + + ++ + +I L ++RST IL + + V + Sbjct: 251 IYGWRGANIQNIQNFEKDFKN--------AKVILLEQNYRSTQPILDLANTVIKNNSLRK 302 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + LW ++++ + ++ + Sbjct: 303 DKN---------------------LW---TAKNEGDMPIYRRMYSDIDE----------- 327 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A ++ I + R +++ +L R + L L I Sbjct: 328 ADQVVQWIEQ----------ERYRENPYEEMAILYRTNAQSRLFEERLNRL----GIPNR 373 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464 D IKD ++ R + + D+++ ++ P + + K + ++ + Sbjct: 374 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQNRSI 433 Query: 465 TVYEYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518 ++ +YI+ F+N K Q I + + IL R Sbjct: 434 SMMQYIKDTDLPDFSNATAKKLQEFYYLIKSFPK--DEMNVAELMEYILDKTGYRANLEK 491 Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIM 575 +R ++ +DE+++ + Q++ + L LE N V +M Sbjct: 492 SNNRDDKTRLENIDEYISSLYQFVQDNPD--KNLREYLETSSLMTDLDKTDDNTKGVSMM 549 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE VVF + Sbjct: 550 TIHAAKGLEFDVVFFTGLEEGTIPSRV--------------------------------- 576 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 EE RL YV +TRA +L I + Sbjct: 577 -----DEDVEEERRLCYVAITRARKKLYITSVQSRRK 608 >gi|295396697|ref|ZP_06806843.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC 49030] gi|294970443|gb|EFG46372.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC 49030] Length = 769 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 118/760 (15%), Positives = 229/760 (30%), Gaps = 133/760 (17%) Query: 11 ESYELIYK--DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--------------Q 54 I P ++ NK ++ + ++A+ + + Sbjct: 63 RRIAHILATGQAHPGQILAITFTNKAAREMLDRVTSLVGERARGMWISTFHSACVRILRR 122 Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +A + S L + T + ++ ++ L+ ++ ++E + + Sbjct: 123 EARDRTSNFSIYDAQDSLRLITQVTKELDLDPKKFAP--KTLRNRISNLKNECVTASE-- 178 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + + + Y+E DF+DLI+ T LL I Sbjct: 179 -FEATAQENNPLEQATARVYSRYQERLAVANAYDFDDLIMETVRLLTHNPE---IARNYR 234 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 HI +DE QDT+ Q+ +IR L G + L VGD QSIY+F GA Sbjct: 235 ARFTHIFVDEYQDTNPAQYALIRVLA-----GADLPEPTGQLTVVGDADQSIYAFRGATV 289 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + ++ ++ I L ++RST +IL+ + V ++ + + Sbjct: 290 RNIVEFEKDFPH--------AQTIVLEQNYRSTQNILSAANAVIRNNDDRRDKN------ 335 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 LW D + W + + A+ I TI Sbjct: 336 ---------------LW------TDQGSGEKVVGWVASTEHAE--------AQFIVDTID 366 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 ++ + D V R + I + + Sbjct: 367 ELMDES---------DLTYGDFAVFYRTNAQSRAIEDAL----VRAGLPYKVVGGTRFYE 413 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQKF 473 IKD++A + + DD++ +L P + + F E + Y+ + + Sbjct: 414 RKEIKDVLAYAHVLSNPSDDVNLRRILNVPKRGIGDRGEAFIAALANRERISFYDALLRA 473 Query: 474 A------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 + Q K + +L+ +Q P I+ + Sbjct: 474 EEAPGMTKRTLGPLQTFAKLLSDLLEASQGAQPSRVLEAIMEQTGYLDGLNRSTDPQDES 533 Query: 525 VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 +D L E + + ++L + + + S + +MT+HTAKGL Sbjct: 534 RVDNLAELVAVAEDFQHTQPEATLNDFLERVSLTADADSVPDSQAGE-ITLMTLHTAKGL 592 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H+ + Sbjct: 593 EFPVVFLTGLEDGTFPHQRSFTS----------------------------------ATE 618 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E RL YVG+TRA +L + + S + N + + D + Sbjct: 619 LAEERRLAYVGLTRAMQRLFLSRSETRSMWGQSSYNPPSRFLQEIPEELIDWKSTGSVTA 678 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + T + ++ ++++P+ Sbjct: 679 PVASSANRSLSAGRYTSGGRTAASVGRSGSRIRPQREVPE 718 >gi|298385429|ref|ZP_06994987.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14] gi|298261570|gb|EFI04436.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14] Length = 788 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 103/683 (15%), Positives = 208/683 (30%), Gaps = 124/683 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL++ T L + + + ++ ++L+D Sbjct: 170 AAKVPAVREIYTRYWERCRQAGAMDFDDLLVYTYILFRDFPE---VLARYREQFRYVLVD 226 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L ++ Sbjct: 227 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKV 276 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E S Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 317 ---------------EKERGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 349 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R + IKD++A Sbjct: 350 -----HSYGYADFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 400 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + +++ + + Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATENGVSLWAALCEPLSYGLNINK 460 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I + S ++ T I+ E + ++E Sbjct: 461 GTHTKLQGFRELIEGFMTDQADKSAYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEEL 520 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + ++ +MTVH+AKGLE Sbjct: 521 VNGMNDFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 579 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 580 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 605 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + I K + + D N R+ + Sbjct: 606 ERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGSPSRFLRDIDVNYLRLPHEAGVSRSVD 665 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + T + K + + S + Sbjct: 666 EGAGRFRREIGGGFTRTASPTRTPYGTKFSDRERPKTQVIAPSVPKNLKKV--SAVSGSS 723 Query: 767 KTNLESLLSDNQTFNRGLII-HK 788 + + + G +I H+ Sbjct: 724 TRSASAGSASVTGVQAGQMIEHE 746 >gi|60682035|ref|YP_212179.1| putative helicase [Bacteroides fragilis NCTC 9343] gi|60493469|emb|CAH08255.1| putative helicase [Bacteroides fragilis NCTC 9343] Length = 786 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 104/689 (15%), Positives = 219/689 (31%), Gaps = 129/689 (18%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A + + + + Y E ++ +DF+DL++ T L + + + ++ ++L+ Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L + Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I + +L ++RST I+ + + E S Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + + +Y D + + I+ + Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + D +L R + + R + IKD++ Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474 A R +++ D+ +F ++ P + + KI T +++ + + Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 +K Q I + + + ++ T I+ + E + ++E Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518 Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 +N + E N+ SL + +SE+ + +V +MTVH+AKGLE Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 VF+V +F E Sbjct: 578 RNVFVVGMEENLFPSGMAGDSP----------------------------------RAME 603 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV +TRA + + K + + D ++ + Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI-------LN 758 + + + E + ++ ++ + I + L+ Sbjct: 664 DEGAGRFRREMEEGYSRRSSSERFSARPSADRPERERPKAQIIAPTVPRNLKKVSGTMLS 723 Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786 PS+ G ++ + +++ F G +I Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752 >gi|227494729|ref|ZP_03925045.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] gi|226831729|gb|EEH64112.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] Length = 868 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 122/818 (14%), Positives = 232/818 (28%), Gaps = 162/818 (19%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQK 77 ++ NK + E + +A+ + + + L Sbjct: 96 RARAGEILAITFTNKAAAEMRERVANLVGPQARRMWVFTFHSACVRILREQYQAAGLRSS 155 Query: 78 FTPQKN--------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA---S 126 FT ++++ +N + KL +++ T++ ++ T A Sbjct: 156 FTIYDAADSQRLITLVSKNLNLDTKRFTAKL--LAARISDLKNELITWQKYQETAANDPV 213 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + HY+ + VLDF+DLI+ LL+K + + HIL+DE Q Sbjct: 214 SKAVAQVYKHYQRQLNEANVLDFDDLIMTVVQLLQKNPA---VAEHYRRRFRHILVDEYQ 270 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L G L VGD QSIY+F GA + + ++ Sbjct: 271 DTNHAQYVLVRELI-----GTGADVPAGELTVVGDSDQSIYAFRGATIRNIEEFEKDF-- 323 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + L ++RST +IL+ + V + + + Sbjct: 324 ------TNAHTVVLEQNYRSTQNILSAANAVIAKNTGRRAKA------------------ 359 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW S + S+ + S AR + I + Sbjct: 360 ---LW-------TSSGAGELISYDAA-------DSEYDEARAVIQEIDRL---------- 392 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + DI + R + + I + IKD +A + Sbjct: 393 TPFDFKYGDIAIFYRTNSQSRALEEHL----IRAGIPYRVVGGTKFYERKEIKDALAYLQ 448 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------- 478 I + +D ++ ++ +P + I T + + Sbjct: 449 VIANPDDTVALRRVINTPRRGVGDKAEAAIATHAEMQGIGFGAAVQQVWIQQGCPRGESE 508 Query: 479 --------------------------------SKFQHVIKYIHELIHIAQFCSPHDFFTL 506 + + I + A+ + + Sbjct: 509 GLDISEGDWQNAVSEALTQTPASVSGITTRALNAVANFWGLIEAMQIFARTNTIAEVLDQ 568 Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIK 562 +L + + ++ L E + + L + + + + Sbjct: 569 VLDLTGYLDELRRSTDPQDMNRVENLAELHSVAADFATTNPQGQLHDFLERVALVADADQ 628 Query: 563 RAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 A N EV +MTVHTAKGLE PVVF+ F H+ Sbjct: 629 VASESENSGEVTLMTVHTAKGLEFPVVFVTGLEDGTFPHQRSL----------------- 671 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 + S E RL YV +TRA +L + + + S Sbjct: 672 -----------------MDPSELAEERRLAYVAITRARKKLYLSRAAVRSAWGTPTDLPP 714 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + D V++ D + + +S+ ++ R + Sbjct: 715 SRFLEDIPAELMEVRR----AHTQMDRYRSGGYSSGSGYSSTTGRSYSSYDDDFAPAFGS 770 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 N + PS L ++ Sbjct: 771 GTGYRGPNAEHSSVSSKPSGPSLSIAQKLSKRSAEAGA 808 >gi|259502570|ref|ZP_05745472.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041] gi|259169460|gb|EEW53955.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041] Length = 752 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 116/766 (15%), Positives = 221/766 (28%), Gaps = 148/766 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V N + ++ L Sbjct: 21 GAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEMQERVGKLLGEGAQDIWVST 80 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + + + +++ +K+ + + K R + + Sbjct: 81 FHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLMKQVCAELNIDPKKFDPRSILSTISNA 140 Query: 123 TLASL--------------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 A L + Y+E + N LDF+DLI+ T +L ++ Sbjct: 141 KNALLTPQEYAAKAGSDNNPHSMYSQVVARAYKLYQEQLEANQALDFDDLIMKTIELFEQ 200 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 ++I +DE QDT+ Q++++ L + + + VGD Sbjct: 201 D---QETLEFYQDRFHYIHVDEYQDTNDAQYKLVHMLADKYE----------NICVVGDA 247 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA + +L +R + L ++RST +IL ++V Sbjct: 248 DQSIYGWRGANIENILNFERDYP--------GAHTVMLEQNYRSTQNILDAANEVIKNNN 299 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + + LW + S+ + + Sbjct: 300 GRKDKN---------------------LW-------TENGRGDKISYYQAQNEHDE---- 327 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A+ I I D +L R + +I + Sbjct: 328 ---AQYIVSKIQEEHAQ---------HGYHYNDFAILYRTNAQSRVIEETF----MKSSV 371 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRH 461 D I+D++A I++ +D +SF ++ +P + + Sbjct: 372 PYTMVGGHKFYDRKEIRDILAYLTLIVNHQDSMSFSRVVNTPKRGIGLTSVEHLREFAND 431 Query: 462 ETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 ++ E Q +K + I +L A F S D IL Q Sbjct: 432 NHWSLLEASQNVDIANTITARTRNKLADFGQLIKDLDQQADFLSITDLTDQILERSGYNQ 491 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQYPPTIKRAH 565 E + LDEF + T ++ L +++L Sbjct: 492 MLRKDNSLEAQARQENLDEFKSVTQEYDKQHADDDVDNRQKLVNFLADLALVSDQD--DV 549 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 V +MT+H AKGLE PVVFLV +F Sbjct: 550 DEQAPAVTLMTLHAAKGLEFPVVFLVGMEEGIFPLSRALLEDDELEEERRL--------- 600 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWY 682 YVG+TRA +L + + +++ + Sbjct: 601 -------------------------AYVGITRAKKKLYLTNAVSRLLYGRVQRNQPSRFV 635 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + + +E + D+ A + + + R+ Sbjct: 636 EEISPELLEEEGGMNSFGGGRLPFDKRAAMKPTYRSQQAKHHYRDA 681 >gi|325846585|ref|ZP_08169500.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481343|gb|EGC84384.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 729 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 102/616 (16%), Positives = 204/616 (33%), Gaps = 118/616 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + +YE+ K + LDF+DLI+ T DL + + ++ +DE QDT+ Q Sbjct: 170 IYKNYEKKKFEYNSLDFDDLILKTLDLFA---IDPDTLKYYQNKFEYVYVDEYQDTNKSQ 226 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +E+I+++ + VGD QSIYSF GA+ +L ++ + Sbjct: 227 YELIKAI----------GKLHNNITVVGDADQSIYSFRGADINNILDFEKDFKN------ 270 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I+L ++RST++I+ V +K+ + + LW Sbjct: 271 --AKTIKLEQNYRSTSNIINVANKLIRNNTERKDKN---------------------LW- 306 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 SQ + + + + + + I++++ + Sbjct: 307 ------TSQNDGSEVLYKKSSVESEEG-------KFVIDEINSLLNDG----------YK 343 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KD+ +L R + + D D IKDL++ + +++ + Sbjct: 344 LKDMAILYRMNAQSRIFEEYLMKNLLD----YKVVGGLKFYDRKEIKDLISYLKVLVNPK 399 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVI 485 DD+S ++ P I + + E + + Sbjct: 400 DDISLKRIINEPKKGIGNKTIENLEKEASKLGFSLTELVCDPSLFSNLPTKLKTSCEKFY 459 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 + E + D +L + + E ID L+EF++ E N Sbjct: 460 NPLSETFDNYEDYKIVDLIEEVLDKSGYIKALEESYSVENRSRIDNLNEFISSAAEYESN 519 Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + + LE + + + +MT+H+AKGLE V F+V +F K Sbjct: 520 NPED--NIHDYLENLSLLSDLDKTEESDDSISLMTIHSAKGLEFKVCFVVGMDDGLFPSK 577 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA ++ Sbjct: 578 RSID-----------------------------------EGNIEEERRLCYVAITRAMEK 602 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L + ++ + + + +++ + K + + E Sbjct: 603 LYLSSAEIRRQFGQAVYYKPSRFLSEIKSSIKQIDQDKTPAYSPYVKMRSNEAYMRDKAR 662 Query: 722 TPLEREETIKQLMDEQ 737 + ++ T+K+ E+ Sbjct: 663 ESVLKKNTVKESSKEE 678 >gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length = 824 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 100/680 (14%), Positives = 189/680 (27%), Gaps = 137/680 (20%) Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 I + + L + AHY++ + LDF+DLI T LL+ + Sbjct: 179 IDPEEAAADADRDSNDLDKLVARVYAHYQQRLRAANALDFDDLIGETVGLLQANP---QV 235 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ Q+ ++R L + P L VGD QSIY+F Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGE-ESDDPYAVPPGELCVVGDADQSIYAF 294 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + +R I L ++RST +IL+ + V S + Sbjct: 295 RGATIRNIEEFERDYP--------DARTILLEQNYRSTQNILSAANSVISRNTGRREKR- 345 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + + + A+ + Sbjct: 346 --------------------LW-------TDSGEGELITGYVADNEHDE-------AQFV 371 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A I ++ + ++ V R + + + I Sbjct: 372 ASEIDRLVDAGET---------KFGEVAVFYRTNNSSRALEEIF----IRLGIPYKVVGG 418 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + ++D++A R + +++D +S +L +P + + + + Sbjct: 419 TRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVSVYAEQKGVGFAE 478 Query: 470 IQKFA---------NCGISKFQHVIKYIHELIHIAQF--------CSPHDFFTLILGAKK 512 + A ++ + L + + +L Sbjct: 479 ALRAAGEGSVPLLNTRSQKAITSFLELLDGLRALMVSTDADGNDLTDIGEVVEGVLDRTG 538 Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRN---------------------EQNSYSSLQ 548 R++ + + +D L+E ++ E Sbjct: 539 YRRELEASSDPQDGARLDNLNELVSVAREFSSDARNAAAFAEENAAEGDVVEDEGQPDPG 598 Query: 549 ELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L + LE+ V +MT+HTAKGLE PVVF+ F H Sbjct: 599 SLAAFLERVSLVADSDQVPDEGEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGD 658 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 + E RL YVG+TRA +L + + Sbjct: 659 P----------------------------------AELSEERRLAYVGITRARHRLYLTR 684 Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 S + + + + ++ Sbjct: 685 AIVRSAWGQPVTNPESRFLQEIPADLVNWRREDPGVLGTGGAIGGGRPRGQGYGGGFGGG 744 Query: 727 EETIKQLMDEQKIPKKLFSP 746 +P Sbjct: 745 GAGFGSTGRSGASSPSFGAP 764 >gi|284048669|ref|YP_003399008.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731] gi|283952890|gb|ADB47693.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731] Length = 1116 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 133/982 (13%), Positives = 294/982 (29%), Gaps = 88/982 (8%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSL------SMETGNPTILKKAQTLQ 54 L L + I L ++ + E G L Sbjct: 155 LAALLDLYPADRLARILVALIDDLPEILALPGGLAAPYEVSLGGEEAGKIEAEGALDALL 214 Query: 55 QASQTQCIEER--FSLLSS-----FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107 ++ + R L+ K + + +K+ +K++++ Sbjct: 215 ESRDLAGPKSRAKLDALADQREAIHQWIAAGEYSKASAALKPVSATGKIKDLVKEAKEAL 274 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ + L +A + + F L +LL+K Sbjct: 275 ARLETLSLDGAGAEQARHWENLLGRFRQALLDAAESREIYSFGYLSGRAVELLEK---RP 331 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + ++ ++++DE QDT+ Q ++ L+ G + R LF VGD KQSIY Sbjct: 332 NVLFRYKSRFRYLMVDEFQDTNEEQKRLVYLLSG----GSSRSLQGRNLFVVGDAKQSIY 387 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA+ + + I + +FRS +I+ + +F Sbjct: 388 RFRGADVSVFRQVRDAIG------ETGGDNIVMDDNFRSAPEIIEACNTLFDDLLGTDSR 441 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 S+ + + + L + + + Q R Sbjct: 442 SDVTAQPLHPHQPSSRKPVFAVLKKGECTLEECQQAEG---------------------R 480 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I + + + +L+ + L I + Sbjct: 481 YVAQAIRQLRED---------TGLPYGQMAILLPAIHLSRQYEEALTAL----GIKSQVS 527 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 D + + D ++L F+L+ D + L+SP S+ + + E +++ Sbjct: 528 DGKGFYERQEVVDWISLLTFLLNPRKDWALAGFLRSPYAGISDRQLTDLLKPWPE-LSLW 586 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVI 526 E F + + + L A F S + A ++ R G E + Sbjct: 587 ES---LRQSLEEPFVTLSRKLEALHRTALFQSLPELMDAFQEAFAVEPTLLAQRGGREKL 643 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPPTIKRAHSANHNEVRIMTVHTAKG 582 + ++ + ++ + L A+ V+IMT+H +KG Sbjct: 644 ANFRKLRALGVKGAMEDGDTARDFLDRLNLMRRLSARESAANQEADPEAVQIMTIHKSKG 703 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE P VFL D + +H + +P +P + ++ + L + Sbjct: 704 LEFPAVFLPDLSKK--NHNDTLGIQFLPGQGFGVRVPD-AQGNLLETSVYTRLKGEKARL 760 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---VYDSFHNDERVKKIK 699 + E R LYV MTRA L + + + + F + Sbjct: 761 ERAEKQRQLYVAMTRAEKYLYLINVDESKEGSRPPDPDKEKWGQSLQRVFAPEGPHGDQM 820 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-ILN 758 ++ E + + + + + +P+ L + + Sbjct: 821 DWEKLDVAEILENQETGQPGAGEAFVLDPAVYDRGRPVTVPRDLELSASALLEYDTCPRS 880 Query: 759 PSTIDTKGKTNLESLL-----SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813 + ++ + G +H++L+++ PE + + Sbjct: 881 FYYHYFRHMPGIDPETVGEGSHRISAIDLGTYVHRVLELLQEEPEEEALAEALEVLDRTG 940 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK-INCPKKDIIISGRIDQIS 872 + + + +P+ + +E + + + G +D++ Sbjct: 941 AEKKVFAREG-RKLVEQYCASPLYQELKDLPAQAERDFALPLFQLEQGRAVFQGSVDRLV 999 Query: 873 ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEP 930 I +YKT H E + QL+IY + YP + + L ++ + Sbjct: 1000 TLPDGRLGIVDYKTGHPPTDGEE--KQGYTRQLTIYALAAEILYPGQKVAWARLHFLQDC 1057 Query: 931 KVFII-PQNKLNKAFAEISTKI 951 + + + + + + + Sbjct: 1058 SSWELKDREQEEEKLKALVENL 1079 >gi|225018678|ref|ZP_03707870.1| hypothetical protein CLOSTMETH_02628 [Clostridium methylpentosum DSM 5476] gi|224948586|gb|EEG29795.1| hypothetical protein CLOSTMETH_02628 [Clostridium methylpentosum DSM 5476] Length = 784 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 110/647 (17%), Positives = 210/647 (32%), Gaps = 122/647 (18%) Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 + ++ +++D+ + + + + Y+ K + LDF+D+I Sbjct: 193 KAVLGEISRAKDQMLTPEEYERQAGSDFRRIEL----AKIYRSYQHQLKSSNALDFDDII 248 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T LL++ + + +IL+DE QDT+ Q+ ++ L+ Sbjct: 249 CLTVVLLEQNPD---LLERYRDRFRYILVDEYQDTNHAQYRLVSLLSG----------GH 295 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 + L VGD+ QSIY F GA + +L ++ Q ++I L ++RST +IL+ Sbjct: 296 QNLCVVGDDDQSIYKFRGATIENILSFEKQFQN--------ATVIRLEQNYRSTQNILSA 347 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + V +G + LW + + + S Sbjct: 348 ANAVIENNTGRKGKN---------------------LW-------TDKGDGEPVSVCRVN 379 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + + A IA TIS I + ++ +D +L R + I Sbjct: 380 NENAE-------ADFIASTISQDIESG----------MKFRDHAILYRMNAQSATIERYF 422 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 I D IKD++A + + D+L ++ P + Sbjct: 423 ----VRAGIPYRIVGGTKFYDRKEIKDILAYMSVVNNTGDNLRLKRIINEPKRGIGPGTV 478 Query: 454 FKICTQRHETETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 K+ + + A+ + + I +L A +F + Sbjct: 479 GKVQEIADGLGLAMFDVLRNADTYAALVKKAASLRDFSNMIEQLREDAVELPLDEFLDSL 538 Query: 508 LGAKKGRQQFISR--FGNEVIDVLDEFL-NFTLRNEQNSYSSLQELISELEQYPPTIKRA 564 + + + G I+ + E N ++N ++L + E+ Y Sbjct: 539 IARTGYVDELKKQGKEGQTRIENIQELKTNLIKFRQENDDATLGGFLEEVALYTDLDSFN 598 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + + V +MT+H+AKGLE PVVF+ +F Sbjct: 599 A--SDDSVTMMTMHSAKGLEFPVVFIAGMEEGIFPGVRSIGEP----------------- 639 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTW 681 EE RL YVG+TRA +L I + N K + + Sbjct: 640 -----------------DELEEERRLAYVGITRAKKKLYITNAAQRMLFGNTKYARPSRF 682 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + + + E ++ N + + + E Sbjct: 683 IGEIPEHLVDSEDKTVSRVINFEEESRRVVQPQINVDGVGLRHKAEA 729 >gi|322516818|ref|ZP_08069720.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC 49124] gi|322124655|gb|EFX96119.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC 49124] Length = 773 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 106/645 (16%), Positives = 200/645 (31%), Gaps = 123/645 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L K + Q +I +DE QD Sbjct: 170 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 226 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 227 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 274 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + Sbjct: 275 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 309 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI N++ + Sbjct: 310 --LW-------TQNDDGEQIVYYRANDERDE-------AIFVASTIDNIVREEGK----- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 349 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 400 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 401 IANPSDNISFERVVNEPKRGVGPGTLEKIRTFAYEQNMSLLDASANIMLSPIKGKAAQGV 460 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I L S + IL + E I+ ++EF++ T Sbjct: 461 YDFANTILNLREQLDGLSITETVEAILDKSGYLDALSMQQTLESQARIENIEEFMSVTKN 520 Query: 539 N---------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 ++ L +++L T A V +MT+H AKGLE PVVF Sbjct: 521 FDETNTDVTEDETGIDRLGRFLNDLALIADTDDGDMEAAE--VTLMTLHAAKGLEFPVVF 578 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + Sbjct: 579 LIGMEEGVFPLSRASEDPEELEEERRL--------------------------------- 605 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 YVG+TRA + L + + + K++ + + + + + + + + Sbjct: 606 -AYVGITRAEEILFLTNANTRTLFGKTSYNRPSRFLREISDDLLQYQGLARPANSSFGVR 664 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 E T + L++ ++ + + K P Sbjct: 665 FTKEEPTQFGQGMSLQQALQTRKANAQPQRHTGAQPFSKATGGLP 709 >gi|8928266|sp|Q9S3Q0|PCRA_LEUCI RecName: Full=ATP-dependent DNA helicase pcrA gi|5762478|gb|AAD51119.1|AF176554_1 DNA helicase PcrA [Leuconostoc citreum] Length = 749 Score = 297 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 113/754 (14%), Positives = 220/754 (29%), Gaps = 136/754 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64 G ++ L ++ + V + ++ L + Sbjct: 30 GAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREMRERIAALLSEDVARDIWVS 89 Query: 65 RFSLLSSFFLTQKFT---PQKNII---TQEINKKSPDLKEKLKKSQDEFIK--------- 109 F L+ L + KN T + L +++ Sbjct: 90 TFHALAVRILRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDLNLDTNQYDPRTILGMISN 149 Query: 110 IRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ + + A + Y+ K++ +DF+DLI+ T DL + + Sbjct: 150 AKNDMLQPRDYAKAADNAFQETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQS---AP 206 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + Q+ ++ +DE QDT+ Q+ ++ L + + L VGD QSIY Sbjct: 207 DVLARYQQQFEYLHVDEYQDTNDAQYTIVNLLAQ----------RSKNLAVVGDADQSIY 256 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA +L ++ + L ++RST +IL + V + Sbjct: 257 GWRGANMNNILNFEKDYPN--------AHTVMLEQNYRSTQNILDAANAVINHNNERVPK 308 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW Q ++ + A Sbjct: 309 K---------------------LW-------TENGKGDQITYYRAQTEHDE-------AN 333 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I I + T + D VL R + I + Sbjct: 334 FILSNIQQLRETKHMA---------YSDFAVLYRTNAQSRNIEESL----VKANMPYSMV 380 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-------FKICTQR 460 + I D+MA I + +D+ +F ++ P + ++ Sbjct: 381 GGHKFYERKEILDIMAYMSLITNPDDNAAFERVVNEPKRGLGATSLTRLRELANRLNVSY 440 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + E SKF + +H L ++F + + L++ RQ + Sbjct: 441 MKAIGSIELAPSITTKAASKFLTFAEMMHNLRQQSEFLNVTELTELVMTQSGYRQMLAEK 500 Query: 521 FGNE---VIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEV 572 + ++ L+EFL+ T + S+ + L V Sbjct: 501 NDPDSQARLENLEEFLSVTKEFDDKYQPEDPESIDPVTDFLGTTALMSDLDDFEEGDGAV 560 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFL+ +F Sbjct: 561 TLMTLHAAKGLEFPVVFLIGLKEGIFPLS------------------------------- 589 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 + + EE RL YVG+TRA +L + + ++ + + Sbjct: 590 ---RAMMDEDLLEEERRLAYVGITRAMKKLFLTNAFSRLLYGRTQANEPSRFIAEISPEL 646 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 L+ + + + ++ T + Sbjct: 647 LETAYSGLSRDKTQKKTLPFDRKMQRATATTYQA 680 >gi|315641090|ref|ZP_07896169.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952] gi|315483098|gb|EFU73615.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952] Length = 754 Score = 297 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 116/720 (16%), Positives = 223/720 (30%), Gaps = 146/720 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 32 GAGSGKTRVLTHRVAYLIQEKDVNPWNILAITFTNKAAREMRERIHALVGPESEDIWIST 91 Query: 66 FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106 F + L ++ ++ + I+ K D + L + Sbjct: 92 FHSMCVRILRREVEKIGYNRNFTILDSSDQLSLMKRMLKELNIDPKKYDPRGILASISNA 151 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 K++ N K+ S + Y++ KN +DF+DLI+NT +L KK Sbjct: 152 KNKLQTPANVSKLANSFIEL--QVARCYEAYQKELVKNQCMDFDDLIMNTIELFKKHPD- 208 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + ++I +DE QDT+ Q+ ++R L + F L VGD QSI Sbjct: 209 --VLAFYQNKFHYIHVDEYQDTNHAQYTLVRMLADRFE----------NLCVVGDADQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L + +I L ++RST ILT ++V + + Sbjct: 257 YGWRGADMQNILDFEDDYPA--------AKVILLEQNYRSTKTILTAANQVIKQNKQRKA 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ + + + Sbjct: 309 KN---------------------LW-------TDNEPGEKIVYFRGGNEHDEG------- 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 R + I + + + VL R + ++ I Sbjct: 334 RFVVSEIVKRVRSKEHI---------YGEFAVLYRTNAQSRVVEESL----MKANIPYKL 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 I+D++A + + D +S ++ +P + K+ + Sbjct: 381 VGGQKFYSRKEIRDVLAYLNVLANPSDSISLERIINTPKRGIGPGTVEKLKGFADENGWS 440 Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E Q + + + + +L + F S + +L + ++ Sbjct: 441 LFEGAQNVNVSTISGKANRELEQFGLLLTDLQQMIPFLSLTELTEEVLKRTGYLNELKNQ 500 Query: 521 FGNE---VIDVLDEFLNFTLRN-----------EQNSYSSLQELISELEQYPPTIKRAHS 566 E I+ + EFL+ T E + L E ++EL Sbjct: 501 KTIESEARIENIQEFLSVTQEFDRRYASQAEDSEADPTEKLAEFLNELALLADVDSF--E 558 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 + ++V +MT+H AKGLE P+VFLV +F Sbjct: 559 EDSSQVTLMTLHAAKGLEFPIVFLVGMEENLFPLSRALLEDKELEEE------------- 605 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 RL YVG+TRA QL + + +S + Sbjct: 606 ---------------------RRLAYVGITRAEKQLFLTNAMTRNLYGRSQYNHPSRFLE 644 >gi|228477389|ref|ZP_04062025.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126] gi|228250824|gb|EEK10012.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126] Length = 769 Score = 297 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 107/645 (16%), Positives = 201/645 (31%), Gaps = 123/645 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L K + Q +I +DE QD Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + Sbjct: 271 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TI N+I + Sbjct: 306 --LW-------TQNDDGEQIVYYRANDERDE-------AVFVASTIDNIIREEGK----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++SF ++ P + KI + ++ + Sbjct: 397 IANPADNISFERVVNEPKRGVGPGTLEKIRTFAYEQNMSLLDASANIMLSPIKGKAAQGV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I L S + +L + E I+ ++EF++ T Sbjct: 457 YDFANMILNLRDQLDGLSITEAVEAVLDKSGYLDALSMQQTLESQARIENIEEFMSVTKN 516 Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 ++ + L +++L T A V +MT+H AKGLE PVVF Sbjct: 517 FDETNSDDTEDETGIDRLGRFLNDLALIADTDDGDMEAAE--VTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF + Sbjct: 575 LIGMEEGVFPLSRASEDPEELEEERRL--------------------------------- 601 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 YVG+TRA + L + + + K+N + + + + + + + + Sbjct: 602 -AYVGITRAEEILFLTNANTRTLFGKTNYNRPSRFLREISDDLLQYQGLARPANSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 E T + L++ ++ + + K P Sbjct: 661 FTKEEPTQFGQGMSLQQALQTRKANAQPQRHTGAQPFSKATGGLP 705 >gi|255324817|ref|ZP_05365930.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum SK141] gi|255298117|gb|EET77421.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum SK141] Length = 841 Score = 297 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 119/818 (14%), Positives = 229/818 (27%), Gaps = 163/818 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + + V+ + ++ L + Sbjct: 65 GAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKAAAEMKERVGGLVGPVAERMWVST 124 Query: 66 FSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 F + L Q + T + + L K Q + K R ++ Sbjct: 125 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDMQLDLKKYTPRVLANQISN 184 Query: 122 STLASL-----------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 + T + A Y+ + +DF+DLI + + Sbjct: 185 HKNELIGPESALEKAQQTKNPFETTVAQVYAEYQRRLRAANAVDFDDLIGEVVRIFTQH- 243 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + H+LIDE QDT+ Q+ ++ +L +G + L VGD Q Sbjct: 244 --QQVVDFYRRRFKHVLIDEYQDTNHAQYALVAALVGRGELGPDA----PELCVVGDSDQ 297 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY+F GA + + +R + I L ++RST IL + V + EN Sbjct: 298 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNENR 349 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW + +Q + + Sbjct: 350 REKN---------------------LW-------TAHGEGEQIVGYVADNEHDE------ 375 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR IA I ++ DI V+ R + + + I Sbjct: 376 -ARFIASEIDSLADKGR----------SYSDIAVMYRTNNASRALEDIF----IRSGIPY 420 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463 + I+D++A R + + +D +S ++ P + I + Sbjct: 421 KVVGGTRFYERREIRDMVAYLRILDNPDDTVSLRRIINVPKRAIGDKAQGHIALHAENHG 480 Query: 464 ETVYEYIQKFANCGISKFQ--------HVIKYIHELIHIAQFCS--------PHDFFTLI 507 + + + + + + + + + I Sbjct: 481 ISFGKALADVPRGDVPGLGTRAINAVTKFNDMMEGIRNQIPSMRDEVTGQPDLGELLSAI 540 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE--------------- 549 L A + + + + +D L+E ++ + + L Sbjct: 541 LDATGYKAELENSNDPQDGARLDNLNELVSVAREFTSEAANQLAASGADAVDPSELVEEG 600 Query: 550 ------LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + LE+ + V +MT+HTAKGLE PVVFL F H Sbjct: 601 EAAPGSLQAFLEKVSLVADADQIPDSETGVVTMMTLHTAKGLEFPVVFLTGWEDGQFPHM 660 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 E RL YVG+TRA +Q Sbjct: 661 RSLGDP----------------------------------KELSEERRLAYVGITRAREQ 686 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L + + S + + + ++ +S+ W ++ Sbjct: 687 LYLTRAILRSAWGNPVTNPASRFLGEVPEDLINWRREDSDSSL-TGAWGEDDYQYGRSYG 745 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + + + SP + P Sbjct: 746 RDWSGWGSGGSRGGSRGARRAASSPSQRTGKPAATSMP 783 >gi|260760725|ref|ZP_05873068.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260671157|gb|EEX57978.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59] Length = 450 Score = 297 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 132/444 (29%), Positives = 201/444 (45%), Gaps = 25/444 (5%) Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 G E D++DEF N+ L E+ LQ + LE P IKR +EVRIMT+H A Sbjct: 1 MGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTMHAA 60 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKH 638 KGLE VVFLVD GS V++ K+ D P + +W P S + + I+ Sbjct: 61 KGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEK 120 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 LK +EEY RLLYVGMTRA D+LIIC + + + TW+ +V D+ Sbjct: 121 LKNRAEEEYRRLLYVGMTRAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVH 176 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 +T A P + EE +P P+K + P L Sbjct: 177 PVTGV-------AARRYRKTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLA 229 Query: 759 PSTIDTKGKTNLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 PS + + E L RG IH LLQ + + KR++ Sbjct: 230 PSGASALIEADEEPPLDLSSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAA 289 Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866 Y + A WP E S+ +L++P + S EV+V G I+ +D +SG Sbjct: 290 DYLARIAADWPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSG 349 Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 +ID+IS+ + + I +YKT+ P+ +E +P + AQL++Y ++L+ YP + + L++ Sbjct: 350 QIDRISVDESRVLIVDYKTNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLF 409 Query: 927 VSEPKVFIIPQNKLNKAFAEISTK 950 P + ++P L+ A + Sbjct: 410 TEGPFLLLVPDAVLDDAMGALKDT 433 >gi|183601527|ref|ZP_02962897.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis HN019] gi|241190974|ref|YP_002968368.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196380|ref|YP_002969935.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219133|gb|EDT89774.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis HN019] gi|240249366|gb|ACS46306.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250934|gb|ACS47873.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793963|gb|ADG33498.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis V9] Length = 939 Score = 297 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 105/653 (16%), Positives = 209/653 (32%), Gaps = 117/653 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKSTLASLTLAKYLNAHYE 138 K + I + D K +L + + F + F + + A Y+ Sbjct: 176 KRFTPRSILARISDYKNQLTDASTALAQYAPDFKPGMRHYSFGQIGDPEPVYAVVYAEYQ 235 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 +DF+DLI+ T +LL+ + + + +IL+DE QDT+ Q+ ++R Sbjct: 236 YRLALANAVDFDDLIVRTVELLRTQPH---VAEYYRHKFRYILVDEYQDTNHAQYVLVRE 292 Query: 199 LTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 L D + S P + VGD QSIY+F GA+ + + ++ Sbjct: 293 LAGVDAHEPSDPMATEAGKSGPAWVTVVGDSDQSIYAFRGADIRNIQDFEKDFP------ 346 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL + V + + LW Sbjct: 347 --DARTIMLEQNYRSTQTILDAANAVIAHNSARKPKK---------------------LW 383 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + + +A + A IA I ++ + + Sbjct: 384 TAL------GEGDKIIGYAA--------DTAQLEAHWIAQQILHLHEE---------KGL 420 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ ++ R + + I + +KD +A + I++ Sbjct: 421 PYSDMAIMYRANAQSRSLEEGL----IQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNP 476 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN------CGISKFQHV 484 DD++ +L P ++ +T + I++ + + + Sbjct: 477 ADDINMRRILNVPKRGLGTRAESQLTLFANEHNQTFWWAIEQLEDIEGMSARTANAVRAF 536 Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + L A P + +L + + ++ L + + Sbjct: 537 RELMTSLRTFAGEHDSKPSEIVAQVLEQSHMLELLRKSEDPQDESRVENLSQLQSVAAEF 596 Query: 540 EQNSYS-SLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 EQN+ +L + + + + +V +MT+HTAKGLE P+VFL Sbjct: 597 EQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTLHTAKGLEYPIVFLTGMEQGT 656 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H E RL YVG+TR Sbjct: 657 FPHS----------------------------------RAMENMDELSEERRLAYVGITR 682 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 A +L + + + + + ++ + + + K+ + + W Sbjct: 683 AKRRLYLTRAAVRAQWGRQSEMMPSQFLDEIPDSLIDWKRREAGMERMRSGWR 735 >gi|121601965|ref|YP_989213.1| putative DNA helicase II [Bartonella bacilliformis KC583] gi|120614142|gb|ABM44743.1| putative DNA helicase II [Bartonella bacilliformis KC583] Length = 816 Score = 297 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 114/619 (18%), Positives = 191/619 (30%), Gaps = 108/619 (17%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L Y+ K DF DL+++ + + I + + +IL+DE QDT Sbjct: 208 VGRKLYHSYQNRLKSLNACDFGDLLLHPIHIFQHNPD---ILREYQDKFRYILVDEYQDT 264 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + S L VGD+ QSIY + GA+ +LR ++ Sbjct: 265 NTAQYLWLRLLAQSST------KSQVNLCCVGDDDQSIYGWRGAKIDNILRFEKDFP--- 315 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + S + G + S Sbjct: 316 -----PAKIIRLERNYRSTSHILKTASHLISHNQGRLGKTLFS----------------- 353 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 S + + +DS + R I I + + Sbjct: 354 ---------DQSNNEETKVKIHAAWDSEEES-------RAIGKEIEQTQQSGHSLNQ--- 394 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 I +LVR L ++ + + I+D MA R + Sbjct: 395 -------IAILVRASFQMREFEDRFVAL----GLNYRVIGGPRFYERMEIRDAMAYLRVV 443 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------F 481 + DDL+F +L +P + + R ++ + K Sbjct: 444 VQPADDLAFERILNTPKRGLGNAALRHLYNSARARAIPLFAAAAEIIETDDLKPKACSAL 503 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + VI+ H + + + IL + E L+ E+ Sbjct: 504 RSVIENFHRWQDMLKHTPHTELAETILDDSGYIAMWQEDRSPEAPTRLENLKEMIRSMEK 563 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++L S LE + + N + V IMT+H+AKGLE VFL +F H+ Sbjct: 564 -----FEDLHSFLEHVSLVMDADSNENMDAVNIMTLHSAKGLEFDTVFLPGWEEGLFPHQ 618 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 EE RL YVG+TRA Sbjct: 619 RSLDEGGRLG--------------------------------LEEERRLAYVGITRAKKH 646 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L I SN + + V I+ + + H+ + Sbjct: 647 LHIWFVSNRRIHGLWQSTLPSRFLDELPEQHIEVADIETSYGGYGQPRFRKQDPFHNNYS 706 Query: 722 TPLEREETIKQLMDEQKIP 740 TP + Q + Sbjct: 707 TPGWQRAQQNQTEATRNNW 725 >gi|295692389|ref|YP_003600999.1| ATP-dependent DNA helicase pcra [Lactobacillus crispatus ST1] gi|295030495|emb|CBL49974.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus ST1] Length = 748 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 127/774 (16%), Positives = 243/774 (31%), Gaps = 145/774 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 90 FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D M ++ +A + Y+ +++ ++DF+DLI+ T L KK Sbjct: 150 KNDLLD--PEAFMQSASSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + + ++L+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 205 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ ++ +K ++L ++RST IL+ + V +N + Sbjct: 255 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + Q+ ++ + A Sbjct: 309 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + K + KD +L R + + I Sbjct: 334 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D IKD+MA + + + D +S ++ +P + K+ T E Sbjct: 381 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLITFADENHYN 440 Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + K + + I AQ + IL + Sbjct: 441 ILDAMGHVAESSINTRAAKKLSDFGTKLRDAITYAQNGTVTGLTEKILTDFDYTDALRAE 500 Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 E ++ LDEFL+ T R E++ + L + ++E+ N+ Sbjct: 501 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 558 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F + Sbjct: 559 VALMTLHAAKGLEFPVVFLIGMEDGLFPLQ------------------------------ 588 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMV 685 + + EE RL YVG+TRA +L + + N S D Sbjct: 589 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 644 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 +E+++ + +S K + ++ + + + Sbjct: 645 DLHKEENEKLQSSFIQSSFEKQTAPFARKAERARAEVYTAKKASGAIGAERKGW 698 >gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str. 28L] gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str. 28L] Length = 738 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 109/579 (18%), Positives = 192/579 (33%), Gaps = 119/579 (20%) Query: 107 FIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 + ++ T + A + YE+ K++ LDF+DL+ LLK+ Sbjct: 144 ISEAKNLLYTASEYSRQAADFYKQKVAEVFRLYEQKLKESNALDFDDLLSYAVRLLKED- 202 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 A IR K Q +IL+DE QDT+ Q+ + + L E + R + VGD Q Sbjct: 203 --AGIREKYQQRFQYILVDEYQDTNRAQYLLTKILAEKW----------RNICVVGDADQ 250 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY++ GA+ + ++ R + I+L ++RST IL + V E Sbjct: 251 SIYAWRGADIRNIIEFTRDY--------GDAATIKLEQNYRSTKTILQAANAVIENNEER 302 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 LW +++ + + + + Sbjct: 303 PQKV---------------------LW------TENEEGKKIIHYAAQTEHDE------- 328 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 A +A I N D+ +L R + ++ + + Sbjct: 329 -AEYVAGCIYNRHEIGGE---------PYGDMAILFRTNAQSRVLEEKL----MRHAVPY 374 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463 D +KD++A R + +Q+D +S + ++ P N + + KI Sbjct: 375 TMVGGTKFYDRKEVKDVLAYLRLLQNQQDSVSLLRIINVPKRNIGKTTLEKIGAYAEDRQ 434 Query: 464 ETVYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + + + + I+ + +L A + +L Sbjct: 435 ISFFMALTEAEEIDITARAKRSIADFTALMCDLAEKATQLNVFSLLEAVLHDTGYAALLE 494 Query: 519 SRFGNE-----VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEV 572 +E + E L+ Q + LQ+ + + S N + V Sbjct: 495 KEAAHEVQGESRKANVGELLSVAKDYLQTNEDGNLQDFLENVALVSDVDSF--SENDSNV 552 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFLV +F + Sbjct: 553 TLMTLHAAKGLEFPVVFLVGMDEGLFPN-------------------------------- 580 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + + EE RL YVG+TRA QL + + Sbjct: 581 --ARTLMSTAAVEEERRLAYVGITRAERQLYVTNAVTRA 617 >gi|160884387|ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483] gi|156110126|gb|EDO11871.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483] Length = 792 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 98/659 (14%), Positives = 209/659 (31%), Gaps = 125/659 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y + ++ +DF+DL++ T L + + + + ++L+D Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ +Q ++ LT++ + + VGD+ QSIYSF GA+ +L +I Sbjct: 229 EYQDTNYVQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E + S Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R I IKD++A Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KRSIPYKIYGGLSFYQRKEIKDVIA 402 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + +++ + + Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I I + ++ T I+ E + ++E Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + ++ +MTVH+AKGLE Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 581 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D + ++ + Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVHYLQLPHEAGVSRAVD 667 Query: 707 DEWIAYEWSTH----HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761 + + + + E+ + + + ++ + ++PS+ Sbjct: 668 EGAGRFRREIEGGFTRSASPSRAPFGSTSSEQRERPKAQIIAPSVPRNLKKVSTVSPSS 726 >gi|288553536|ref|YP_003425471.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4] gi|288544696|gb|ADC48579.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4] Length = 1135 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 148/949 (15%), Positives = 314/949 (33%), Gaps = 103/949 (10%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70 ++ E +K L + L+ + + E L Sbjct: 215 KTVEAFHKAALDL----IPQFPSAEGLTKAQAGHVDRLQ-EAFLSPPSPSGPNEYMDWLI 269 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--- 127 + ++ + P L + ++ + L Sbjct: 270 GVMPKRT--------DKKWQEAIPALFQLFEEHWKPLKDDWKAVGGEVEIDEAASLLLGR 321 Query: 128 --TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 L + Y+ K+ V+DF DL LL+ ++ I+ ++ H+L+DE Sbjct: 322 FIDLLCDFHLAYKREKELRGVVDFSDLQQKAVSLLENKE----IQEACQKQFRHMLVDEF 377 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q E++ + +P F VGD KQSIY F GA + + ++ Sbjct: 378 QDTNRLQLEMLERI------------NPSYRFIVGDTKQSIYRFRGANVRLMNELEQD-- 423 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + IE+ +++R+ I+ V+ +F T ++R Sbjct: 424 ---AVEQENAEAIEMNINYRTCKPIIDGVNALFQSAMTDHITESYQTRYAALSANR---- 476 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI--GTDTIF 363 P Q+ + + + +A+ I+ MI +F Sbjct: 477 --------------EAEQPDQKQMELLLLNKEETDEEAGSYEALAHRINEMITSQQPRVF 522 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + KD+ VL+ R D + + I + I D + Sbjct: 523 KGESWQAPAFKDMAVLIPARTDLLKLERAF----SKQNIPYTVYGGIGFYERQEIIDFLT 578 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF---------- 473 L R++ +D+ + +L+SPL + +D I Q+ T++ +Y+ + Sbjct: 579 LLRWMNRPFEDVYVLSLLRSPLIGLTMNDFVTIAKQKEATQSFADYLYQLSESMPQTGLA 638 Query: 474 ------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-RQQFISRFGNEVI 526 A + + +++ + + SP + F ++ I G + + Sbjct: 639 DSSDLPAQQILDAALKLKEWLLNYVPFSIKGSPGETFDRMIKETGLVHSLLIQSNGLQKV 698 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVHTAK 581 +++ + EQ+ SL+E+I +++ + A + V IMT+H +K Sbjct: 699 KNVEKLIQMI---EQSHLRSLEEIIHFIDERMALNDKEGEAEMERTEGDAVNIMTIHASK 755 Query: 582 GLESPVVFLVDTGS---QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 GLE P+V+L + ++ + K + + Sbjct: 756 GLEFPIVYLPQLERSVQGDKGSVRFDAKLGIVWSLEEETDNLEARPKKLVTPGFELVKEA 815 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 ++EE RL YV TRA D L++ N KKS + D Sbjct: 816 AGLESEEESKRLFYVAATRAKDYLVMIG--NGDGAKKSWLHLIEEARDCGPLEDYITVVN 873 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 +++ + T + ++ ++M P++ + +NE L Sbjct: 874 EISEQLPHHAENHLYKGTELAAKKEVLYPLSVSEIMTFIHQPEEYYEKYVLGVNESRRLR 933 Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818 S D +T ++ + G ++H+ + + ++ + + A Sbjct: 934 -SDADADQETRVQQV----DPAVVGTLVHRACE-LRDYGFGAQEAVTEAMNYVDELNDTA 987 Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878 + ++ L+E + A + + V + G ID++ + Sbjct: 988 SVKVSYEQEVSELMET--YSEAQQTELGTPVENEWSFATEIAGAEVIGEIDKVVERDGCL 1045 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 I ++KT+ E + + QL +Y+ + ++ + +YV Sbjct: 1046 HIIDFKTNRIKRSGSEWLA-VYDVQLYLYKMAYEQ-ETGHTISTMSLYV 1092 >gi|260174597|ref|ZP_05761009.1| ATP-dependent DNA helicase [Bacteroides sp. D2] gi|315922861|ref|ZP_07919101.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696736|gb|EFS33571.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 792 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 97/659 (14%), Positives = 207/659 (31%), Gaps = 125/659 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y + ++ +DF+DL++ T L + + + + ++L+D Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L +I Sbjct: 229 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E + S Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R I IKD++A Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KRSIPYKIYGGLSFYQRKEIKDVIA 402 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + +++ + + Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I I + ++ T I+ E + ++E Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + ++ +MTVH+AKGLE Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 581 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + + + + D + ++ + Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGRMEFGSPSRFLRDIDVHYLQLPHEAGVSRAVD 667 Query: 707 DEWIAYEWSTH----HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761 + + + + E+ + + + ++ + ++PS Sbjct: 668 EGAGRFRREIEGGFTRSASPSRAPFGSTSSEQRERPKAQIIAPSVPRNLKKVSTVSPSN 726 >gi|300088001|ref|YP_003758523.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527734|gb|ADJ26202.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 747 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 113/660 (17%), Positives = 211/660 (31%), Gaps = 125/660 (18%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + YE+ + N LDF+DL++ T L ++ I + + HI++DE Sbjct: 164 LEEIVGRMYEQYEKMLRANNALDFDDLLLKTVFLFQR---RPEILKRYQERYVHIMVDEF 220 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+L+Q+E+++ L + R + VGD QSIYS+ A+ + V ++ Sbjct: 221 QDTNLVQYELVKLLAGHY----------RNIAVVGDPDQSIYSWRAADLRNVFNFEKDFP 270 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 R S+ L ++RST+ IL + + + + + Sbjct: 271 DR--------SVHYLEQNYRSTSKILEAASGIIAHNQKRKDIK----------------- 305 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + + ++ + A+ + + + Sbjct: 306 ----LW-------TENGSGEPLCILEAYNEQEE-------AQMVVREAEKLSASGQ---- 343 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + D+ VL R + ++ Y + + +KDL+A Sbjct: 344 -----YKLSDMAVLYRTNAQSRVLEEYF----IRYGVPYKLVAGTRFYERREVKDLIAYF 394 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS----- 479 R I + D +S + ++ P + I + R + +++E + A G Sbjct: 395 RLIHNPADSVSLMRIINVPARGLGDKSIADLQNWARGQGLSLFEALAASAGEGEKPPLSA 454 Query: 480 ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLN 534 F + + I A S + F IL R ++ G E ++ + E Sbjct: 455 RAIGAFASFYRMVESFIQAAAEKSLTELFDEILERTGYRAFLEAQPDGQERMENIAELHT 514 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + + L LE V ++T+H AKGLE PVVF+V Sbjct: 515 VAEQFAALPPG--EALSPFLESVSLVSDIDNLDETEGGVTLITLHQAKGLEFPVVFIVGL 572 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +V H + EE RL YV Sbjct: 573 EERVLPH----------------------------------FRSLDDPAQMEEERRLCYV 598 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 G+TRA ++L + + + S + E + T ++ K + Sbjct: 599 GVTRARERLYLLRAFRRNLMGGSMLNDPSRFL-------EAIPNELTTGTLPKAPPVHAR 651 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 P + P + S + +P + P K + Sbjct: 652 TGASSPRSAPPTIGRVGTPSTGRPPVSAGGPSQTRVPAGKPA-VAPYKTGDKVAHPIFGD 710 >gi|167957596|ref|ZP_02544670.1| ATP-dependent DNA helicase PcrA [candidate division TM7 single-cell isolate TM7c] Length = 702 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 112/547 (20%), Positives = 188/547 (34%), Gaps = 116/547 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ K+++ LDF+DL++ T +LLK +R K +I+IDE QDT+ Sbjct: 172 EIYKMYEKLKRESNALDFDDLLLETVNLLKNHPE---VRKKWQDHFKYIMIDEYQDTNAA 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ LT + + + VGD+ QSIYS+ GA+ + +L ++ Sbjct: 229 QYLIVSLLT----------NDKKNICVVGDDWQSIYSWRGADFRNILNFEKDF------- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++R+T IL V + Q V+++ Sbjct: 272 -SGAQIIKLEQNYRNTGAILEAAQNVIIKNNQRTDK---------KIWTAGNQGDPVEVY 321 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + A IA ISN + + Sbjct: 322 SALDDKSE--------------------------AAWIANVISNKVESGE---------Y 346 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + I N I + D IKD+MA R Sbjct: 347 NFDDFAILYRTNSQSYTIEQAL----NQRSIPLNIVGGTRFFDRAVIKDIMAYVRLCYQP 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491 D SF+ + P + K + + +TE K + + + EL Sbjct: 403 NDMSSFMRIANVPSRGVGPTSLAKFISWQGQTEMDIISALKQSGEATTITARARNALQEL 462 Query: 492 --------IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 I +P D ++ R + + D +E+LN + E Sbjct: 463 GCKLQIIRSEILNNTAPSDILEKVIDKTGYRDYIL-DGSPQAEDN-NEYLNTLID-ESRP 519 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 Y+ ++ + LE+ + V +MT+H AKGLE PVVF+ + H Sbjct: 520 YADIE---TYLEEVSLMSSSDLQSEKGYVTLMTLHAAKGLEFPVVFMSGMEEGILPHSRT 576 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + EE RL YVGMTRA ++L Sbjct: 577 LDGNP---------------------------------DDLEEERRLCYVGMTRARERLY 603 Query: 664 ICKHSNT 670 + ++ Sbjct: 604 LSHSASR 610 >gi|317482225|ref|ZP_07941247.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA] gi|316916363|gb|EFV37763.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA] Length = 884 Score = 296 bits (758), Expect = 9e-78, Method: Composition-based stats. Identities = 117/727 (16%), Positives = 220/727 (30%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L+ + Sbjct: 75 AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123 L T+ K + I DLK L ++ F F + Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A YE +DF+DLI T +LL+ + +IL+D Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L S P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V S E + Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + + A A+ +A I+ + Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 I D+ ++ R + + + + Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471 IKD +A + +++ +DD++ +L P + + R + + + Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489 Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + + L A P + +L R + + Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 ++ L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +E RL YVG+TRA +L + + + S ++ + + + K+ + Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695 Query: 704 INKDEWI 710 + W Sbjct: 696 RMRASWE 702 >gi|189439490|ref|YP_001954571.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] gi|312132895|ref|YP_004000234.1| uvrd2 [Bifidobacterium longum subsp. longum BBMN68] gi|322688951|ref|YP_004208685.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis 157F] gi|189427925|gb|ACD98073.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] gi|311773868|gb|ADQ03356.1| UvrD2 [Bifidobacterium longum subsp. longum BBMN68] gi|320460287|dbj|BAJ70907.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis 157F] Length = 900 Score = 296 bits (758), Expect = 9e-78, Method: Composition-based stats. Identities = 117/727 (16%), Positives = 220/727 (30%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L+ + Sbjct: 75 AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123 L T+ K + I DLK L ++ F F + Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A YE +DF+DLI T +LL+ + +IL+D Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L S P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V S E + Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + + A A+ +A I+ + Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 I D+ ++ R + + + + Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471 IKD +A + +++ +DD++ +L P + + R + + + Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489 Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + + L A P + +L R + + Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 ++ L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +E RL YVG+TRA +L + + + S ++ + + + K+ + Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695 Query: 704 INKDEWI 710 + W Sbjct: 696 RMRASWE 702 >gi|23465464|ref|NP_696067.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705] gi|239622010|ref|ZP_04665041.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326117|gb|AAN24703.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705] gi|239515201|gb|EEQ55068.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 881 Score = 296 bits (758), Expect = 9e-78, Method: Composition-based stats. Identities = 117/727 (16%), Positives = 220/727 (30%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L+ + Sbjct: 75 AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123 L T+ K + I DLK L ++ F F + Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A YE +DF+DLI T +LL+ + +IL+D Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L S P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V S E + Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + + A A+ +A I+ + Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 I D+ ++ R + + + + Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471 IKD +A + +++ +DD++ +L P + + R + + + Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489 Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + + L A P + +L R + + Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 ++ L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +E RL YVG+TRA +L + + + S ++ + + + K+ + Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695 Query: 704 INKDEWI 710 + W Sbjct: 696 RMRASWE 702 >gi|42520776|ref|NP_966691.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410516|gb|AAS14625.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila melanogaster] Length = 638 Score = 296 bits (758), Expect = 9e-78, Method: Composition-based stats. Identities = 102/557 (18%), Positives = 184/557 (33%), Gaps = 121/557 (21%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + Y+E K +DF DL++ L + + + ++++D Sbjct: 162 RPVYVTALKVYHQYQERLKFLNSVDFGDLLLYNIQLFNQ---KTEVLSYYQNKFKYVMVD 218 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ IQ+ ++ L ++ + VGD+ QSIYS+ GAE + +L+ Sbjct: 219 EYQDTNAIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVENILKFSDD 268 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + ++L ++RST+ IL V + + Sbjct: 269 FKN--------AKTVKLECNYRSTSHILATASYVINHNKTRLEKK--------------- 305 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + ++ + +D + AR I+ I + Sbjct: 306 ------LW-------TTNIEGEKVNLIKLWDGKAE-------ARFISEQILKL------- 338 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + DI VLVR T ++ Y I + ++D++A Sbjct: 339 -----NKYRFSDIAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDIIA 389 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANC 476 R + + DDL+F ++ P + + KI T + + +E + Sbjct: 390 YLRLVTNNNDDLAFERIVNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSNQVTER 449 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534 + I I H+F ++ + + G I+ + E ++ Sbjct: 450 IKLSLNDFLNKIKAWEEIVSVKPLHEFVKIVANQSGYIEMLENEEVTGLARIENVKELIS 509 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + LE ++ + N + V +MT+H AKGLE P VFL Sbjct: 510 SLKNFDNA--------TTFLEHISLVMEVDNMNNDDTVYVMTLHAAKGLEFPCVFLPGWE 561 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H+ EE RL YVG Sbjct: 562 EGLFPHQRSFDDKSG--------------------------------KALEEERRLAYVG 589 Query: 655 MTRASDQLIICKHSNTS 671 +TRA ++LII Sbjct: 590 ITRAKERLIISCADRRE 606 >gi|304403945|ref|ZP_07385607.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9] gi|304346923|gb|EFM12755.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9] Length = 1338 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 137/824 (16%), Positives = 269/824 (32%), Gaps = 82/824 (9%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQ 58 LS + E D+ + ++L+ P K L A Sbjct: 217 LSATDWVEAARADVHLALQGAAGLFEQALALTRLPAGPAPYGDTLDEDRKVVAQLANAVA 276 Query: 59 TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 ++ E +S + + + +++ +++ +L++K K R + Sbjct: 277 SEPWEAWPEAFASASFGRLKAMRGDEFDKQLQERAKELRDKAKTLIAGLTDKWFRRTPEQ 336 Query: 119 MFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK------KRDV 165 + + A L Y+E K++ +LDF DL + +L+ ++++ Sbjct: 337 LREDLEELAPLMEALSELVIAFGHRYDELKREKGLLDFSDLEHSCLRILRAAESSPEQEL 396 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + + Q IL+DE QDT+ +Q ++ + P F VGD KQS Sbjct: 397 PSAAALEYQQRFVEILLDEYQDTNTVQEAIVSLIA-----------KPGNRFMVGDVKQS 445 Query: 226 IYSFHGAEPKRVLREKRIN-----------QKRATNAGQKFSIIELPLSFRSTADILTVV 274 IY F AEP L + + + A Q I+L +FRS A+++ V Sbjct: 446 IYRFRLAEPNLFLTKYKTYVPADQIGETADSPSISTASQSGVRIDLARNFRSRAEVVDGV 505 Query: 275 DKVFSIPENA--QGLSEDSTTTIRHRSSRI----GQVGTVQLWEQVVS------------ 316 + +F L D + ++ +L Sbjct: 506 NGIFRAVMRETVGELEYDERAELVCGAAYPSPDRADRFAAELVLVDRKGTSDVSGMDAGE 565 Query: 317 --QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG---KKRVI 371 + + + +A + AR IA I ++ +G + R + Sbjct: 566 SLADEDSSGDADGEGLTPAMEAAELQTAQLEARVIARRIRELMDEGYPVWDGRRKETRPL 625 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 Q +DI++L+R + I + I D ++ +M+L R I + Sbjct: 626 QFRDIVILLRATQQWAPI---MIEELQTFDIPAYAELGTGYFDATEVEVMMSLLRIIDNP 682 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-----ETETVYEYIQKFANCGISKFQHVIK 486 D+ L+SP+F + +++ K+ E + + +K + + Sbjct: 683 YQDIPLAGALRSPIFGLTAEELAKVRIALRSGSFYEAIRYSASAEALPSGVQAKLEQFLS 742 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS 545 + +A+ S + L+ G + L ++ + E S+ Sbjct: 743 QLDRWRELARRGSLVELLALLYRETGYYDFVGGLPGGAQRQANLRALMDRARQYEATSFR 802 Query: 546 SLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + +E+ RA + VRIM++H +KGLE PVVF+ G Sbjct: 803 GLFRFLRFIERMRDTGGDLGSARALGEQEDVVRIMSIHKSKGLEFPVVFVAGLGKMFNMQ 862 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + L P + + + ++ E R+LYV +TR + Sbjct: 863 DLNAPFLLHKELGYGPKFIDAQLRVSYPTLPYLAIGRRMRMELLAEEMRVLYVAVTRPKE 922 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 ++I+ + + K ++ D+ + + L + Sbjct: 923 KMILIGSVSDAEAKLASWSGAADLEGRLSDDRLAAARAYLDWVGPLAVGSGMLTTISAEG 982 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 T L E I + D++ D P S Sbjct: 983 VTALNEVEQI--VSDDRAGADGARHVPTLDAVRPPASEQSAAAA 1024 Score = 114 bits (285), Expect = 7e-23, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 16/227 (7%) Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783 ERE I + I L N + + + + RG Sbjct: 1112 AEREALIYPDAENPAIAPMLGDNRFNGAPASAVSSAEDYTFRLRRPRFMEERALTAAERG 1171 Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM 841 + H +Q I + A+ + +++ +I+ E+ + + Sbjct: 1172 TVSHLFMQHIPLNGPIDAALLQQTLDGLIARHIMTAKQASVIDLPAISSFFESAIGRRLL 1231 Query: 842 SCDS-YSEVSVSGKINC-----------PKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 S E+ S + + I+I G +D + ++ I + +YKT Sbjct: 1232 SARWMKRELPFSCALPASRIYEQQADLTDDEPILIQGVVDCLFEDEEGIVLLDYKTDQVY 1291 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935 + E H QL +Y + L+ + + C + ++S + Sbjct: 1292 GGQWEEAAERHRFQLDVYAEALE-LSIGRPIEECHVHFLSGGTTVRL 1337 >gi|227499501|ref|ZP_03929608.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098] gi|227218380|gb|EEI83631.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098] Length = 731 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 103/579 (17%), Positives = 182/579 (31%), Gaps = 118/579 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YEE K LDF+DLI L K ++ ++ +DE QDT+ Sbjct: 169 EVYKKYEEKKFYYNALDFDDLIDKLLYLFYKD---KECLEYYQRKFEYVFVDEYQDTNNS 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E+I+ + VGD QSIYSF GA +L + + Sbjct: 226 QYELIKYFAGF----------HNNVTVVGDIDQSIYSFRGANISNILNFENDFKNS---- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST +IL +++ + + LW Sbjct: 272 ----ELIKLEQNYRSTGNILETANQLIENNTERKEKN---------------------LW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + S + A+ + I N++ Sbjct: 307 -------TENNQGDKVVYKSNSVESEE-------AKYVLDNIKNLMAEG----------F 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + + I+ D IKDL+A + I++ Sbjct: 343 SPHDFAILYRTNAQSRPFEEVL----MKSLINYKVIGGLKFYDRKEIKDLVAYLKIIVNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGI--SKFQ----HV 484 +D+LS ++ P I ++ T ++ + + + + + Sbjct: 399 KDNLSLKRIINEPKRGIGNKSIEELETIANRHNISMLDLMIDKEFNYLLTDRLKKLTNKF 458 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 + E+ D +L + S + E ID ++EF++ E+ Sbjct: 459 YGPLKEIFDNIDNYKIVDLIDDVLDKSSYLKMLESSYSVEDRSRIDNINEFISSAAEYEE 518 Query: 542 NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + LE + V +M++H AKGLE PVVF+V +F Sbjct: 519 ENPE--ANIYDYLENLSLLSDLDKTESGEECVSLMSMHAAKGLEFPVVFVVGMDEGLFPG 576 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + EE RL YV +TRA + Sbjct: 577 KRSID-----------------------------------EGNIEEERRLFYVAITRARE 601 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + N K + + +KI Sbjct: 602 KLFLTSAQARRNYGKLVYYKPSRFIDEIIDKLRLEEKIA 640 >gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] Length = 824 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 100/680 (14%), Positives = 188/680 (27%), Gaps = 137/680 (20%) Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 I + + L + AHY++ + LDF+DLI T LL+ + Sbjct: 179 IDPEEAAADADRDSNDLDKLVARVYAHYQQRLRAANALDFDDLIGETVGLLQANP---QV 235 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ Q+ ++R L + P L VGD QSIY+F Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGE-ESDDPYAVPPGELCVVGDADQSIYAF 294 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + +R I L ++RST +IL+ + V S + Sbjct: 295 RGATIRNIEEFERDYP--------DARTILLEQNYRSTQNILSAANSVISRNTGRREKR- 345 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + + + A+ + Sbjct: 346 --------------------LW-------TDSGEGELITGYVADNEHDE-------AQFV 371 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A I ++ + ++ V R + + + I Sbjct: 372 ASEIDRLVDAGET---------KFGEVAVFYRTNNSSRALEEIF----IRLGIPYKVVGG 418 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + ++D++A R + +++D +S +L +P + + + + Sbjct: 419 TRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVSVYAEQKGVGFAE 478 Query: 470 IQKFA---------NCGISKFQHVIKYIHELIHIAQF--------CSPHDFFTLILGAKK 512 + A ++ + L + + +L Sbjct: 479 ALRAAGEGSVPLLNTRSQKAIASFLELLDGLRALMVSTDADGNDLTDIGEVVEGVLDRTG 538 Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRN---------------------EQNSYSSLQ 548 R++ + +D L+E ++ E Sbjct: 539 YRRELEVSSDPQDGARLDNLNELVSVAREFSSDARNAAAFAEENAAEGDVVEDEGQPDPG 598 Query: 549 ELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L + LE+ V +MT+HTAKGLE PVVF+ F H Sbjct: 599 SLAAFLERVSLVADSDQVPDEGEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGD 658 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 + E RL YVG+TRA +L + + Sbjct: 659 P----------------------------------AELSEERRLAYVGITRARHRLYLTR 684 Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 S + + + + ++ Sbjct: 685 AIVRSAWGQPVTNPESRFLQEIPADLVNWRREDPGVLGTGGAIGGGRPRGQGYGGGFGGG 744 Query: 727 EETIKQLMDEQKIPKKLFSP 746 +P Sbjct: 745 GAGFGSTGRSGASSPSFGAP 764 >gi|227545941|ref|ZP_03975990.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213575|gb|EEI81424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 910 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 117/727 (16%), Positives = 220/727 (30%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L+ + Sbjct: 85 AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 138 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123 L T+ K + I DLK L ++ F F + Sbjct: 139 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 198 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A YE +DF+DLI T +LL+ + +IL+D Sbjct: 199 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 255 Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L S P + VGD QSIY+F GA+ + Sbjct: 256 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 315 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V S E + Sbjct: 316 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 359 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + + A A+ +A I+ + Sbjct: 360 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 392 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 I D+ ++ R + + + + Sbjct: 393 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 439 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471 IKD +A + +++ +DD++ +L P + + R + + + Sbjct: 440 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 499 Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + + L A P + +L R + + Sbjct: 500 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 559 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 ++ L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 560 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 619 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 620 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 645 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +E RL YVG+TRA +L + + + S ++ + + + K+ + Sbjct: 646 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 705 Query: 704 INKDEWI 710 + W Sbjct: 706 RMRASWE 712 >gi|71906186|ref|YP_283773.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB] gi|71845807|gb|AAZ45303.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB] Length = 713 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 104/623 (16%), Positives = 200/623 (32%), Gaps = 114/623 (18%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L S + K ++ + +N + + ++ Sbjct: 96 LRAHFREAGLPQTFQILDSA---DQLAMVKRLL-KNLNIDDEKYPPR--ELCHFINAHKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + ++ + A YE + V DF +L++ +LL++ + +R Sbjct: 150 QGVRAAQAEAYDNYTQKRVEIYAEYENQCNREGVCDFAELLLRCYELLQRNE---PLRAH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 Q IL+DE QDT+++Q+ ++ L +FAVGD+ QSIY F GA Sbjct: 207 YQQRFRQILVDEFQDTNVLQYAWLKLLAG----------GGAHIFAVGDDDQSIYRFRGA 256 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 E + +R ++I L ++RS +IL + + G + Sbjct: 257 EVGNMREFERDY--------AGANVIRLEQNYRSHGNILAAANAIIKNNRERLGKN---- 304 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + + L + AR I Sbjct: 305 -----------------LW-------TDAGDGEPIRAFEAYSDLDE-------ARFIVEE 333 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++ I +L R + ++ + Sbjct: 334 IRELVRDGN----------SPTQIAILYRSNAQSRVLEHEL----FTKGVPYKVYGGLRF 379 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IK +A R + +Q+DD +F+ ++ P + + ++Y Sbjct: 380 FERQEIKHALAYLRLLGNQDDDTAFLRVVNFPTRGIGARSLENLQATAHQINSSLYNAAA 439 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLD 530 ++ I L + ++ Q + + + G E ++ LD Sbjct: 440 SLTGKAGQTVGAFVRLIETLRQETANLPLPEIIEHVVEKSGLAQHYRVEKEGQERLENLD 499 Query: 531 EFLNFTLRNEQNSYSSLQ--ELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPV 587 E +N + + + L S L + V++M+VH AKGLE V Sbjct: 500 ELINAAATFVDDEGAIGEGGALASFLAHASLEAGEHQAGEGQEAVQLMSVHAAKGLEFDV 559 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF+ +F H++ K EE Sbjct: 560 VFISGLEQGLFPHENSVN---------------------------------EGKDGLEEE 586 Query: 648 NRLLYVGMTRASDQLIICKHSNT 670 RL+YV +TRA +L + Sbjct: 587 RRLMYVAVTRARQRLYVSCAQTR 609 >gi|58696814|ref|ZP_00372342.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila simulans] gi|225630630|ref|YP_002727421.1| DNA helicase II [Wolbachia sp. wRi] gi|58536984|gb|EAL60139.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila simulans] gi|225592611|gb|ACN95630.1| DNA helicase II [Wolbachia sp. wRi] Length = 638 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 101/557 (18%), Positives = 184/557 (33%), Gaps = 121/557 (21%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + Y+E + +DF DL++ L + + + ++++D Sbjct: 162 RPVYVTALKVYHQYQERLRFLNSVDFGDLLLYNIQLFNQ---KTEVLSYYQNKFKYVMVD 218 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ IQ+ ++ L ++ + VGD+ QSIYS+ GAE + +L+ Sbjct: 219 EYQDTNAIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVENILKFSDD 268 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + ++L ++RST+ IL V + + Sbjct: 269 FKN--------AKTVKLECNYRSTSHILATASYVINHNKTRLEKK--------------- 305 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + ++ + +D + AR I+ I + Sbjct: 306 ------LW-------TTNIEGEKVNLIKLWDGKAE-------ARFISEQILKL------- 338 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + DI VLVR T ++ Y I + ++D++A Sbjct: 339 -----NKYRFSDIAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDIIA 389 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANC 476 R + + DDL+F ++ P + + KI T + + +E + Sbjct: 390 YLRLVTNNNDDLAFERIVNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSNQVTER 449 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534 + I I H+F ++ + + G I+ + E ++ Sbjct: 450 IKLSLNDFLNKIKAWEEIVSVKPLHEFVKIVANQSGYIEMLENEEVTGLARIENVKELIS 509 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + LE ++ + N + V +MT+H AKGLE P VFL Sbjct: 510 SLKNFDNA--------TTFLEHISLVMEVDNMNNDDTVYVMTLHAAKGLEFPCVFLPGWE 561 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H+ EE RL YVG Sbjct: 562 EGLFPHQRSFDDKSG--------------------------------KALEEERRLAYVG 589 Query: 655 MTRASDQLIICKHSNTS 671 +TRA ++LII Sbjct: 590 ITRAKERLIISCADRRE 606 >gi|227529820|ref|ZP_03959869.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis ATCC 49540] gi|227350304|gb|EEJ40595.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis ATCC 49540] Length = 1286 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 126/716 (17%), Positives = 255/716 (35%), Gaps = 67/716 (9%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-----QEINKKSPDLKE 98 + ++ + L + + + + K Q + K LKE Sbjct: 264 KSDQEQIRDLITSLDQDQWGDIRAAFQGVKYARMSGGAKKKDPEYETYQSLIKARNGLKE 323 Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCVLDFEDLIIN 155 +LK ++ + ++ + L+ + Y++AK VL+F DL Sbjct: 324 QLKSLATDYFEYDEQRFRQVANHAAGILNELSAVTIEFSRAYQQAKLNRHVLEFSDLEHY 383 Query: 156 TNDLLKKR-DVSAWI--RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212 +L D W+ ++ + I+IDE QDT+ +Q +++ L Sbjct: 384 AYQILTPPADQPDWVTLVNELREHYQEIMIDEYQDTNPLQEKILMQLAS---------PD 434 Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272 + LF VGD KQSIY F A+P L + +K G+ I L +FRS ++ Sbjct: 435 QQNLFMVGDVKQSIYRFREADPTLFLAKYENYRK-----GKGGESIVLAENFRSMQNVTG 489 Query: 273 VVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + +F + + D +++ ++ + Q+ V +D+ NP+ Sbjct: 490 FTNVLFEQLMDRQVGEIDYDKDAHLKYAATYYDENPDNQVTPAEVLLYDANANPKL---- 545 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTP 387 ++ + R +A I M+ + + K R ++ DI++L R + Sbjct: 546 -----PQEDDKLTGELRMVAMRIKQMVTNKELIYDKKTQQMRPVKYGDIVLLERTKNINN 600 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 + L+ + + +D ++ +MAL + I + + D+ V +L+SP+ Sbjct: 601 TLMEQFNELE----VPLTVHDVESYFQATEVRVMMALLKIIDNPKQDIPLVAVLRSPIVG 656 Query: 448 FSEDDIFKICTQRHETETV------------------YEYIQKFANCGISKFQHVIKYIH 489 S ++ I Q + K I+ + Sbjct: 657 LSNKELAFIRLQNRRADFYTALTTCQSNFESHHLQQSSALNSDQLTRLQQKLTTFIEQLT 716 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 E +AQ + + I G + L EQ+S+ L Sbjct: 717 EFRQVAQQQTLVNLIWHIYQETGYLDYVGAMPGGQQRQANLHALYERAHTYEQSSFKGLY 776 Query: 549 ELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 + +E+ + + N V +MT+H +KGL+ PVVFL++T + + Sbjct: 777 QFTRFIEKMQEHDQDLGVAPTQLDTNTVNVMTIHGSKGLQFPVVFLINTNHHFNNAAVRE 836 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 + P+ + + ++ ++++ + E R+LYV +TRA +LII Sbjct: 837 NAVVDPNSGVGIKVMDQQ-RLVYDTPQRQIILNNIQQGERAEDLRVLYVALTRAEQRLII 895 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 N + + W N + + + + +WI + + + Sbjct: 896 TASFNETRRGQKLVEAWNGWQKAFQSNQQLIGSQLRISVKSFMDWIGLALARYSKQ 951 Score = 105 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 20/265 (7%) Query: 690 HNDERVKKIKLTNSINKDEWIAYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 ++ + ++ ++ D+ +A+ + + T + +K++ ++ + + Sbjct: 1015 ADEVGSQSLESPSAKEIDQVLAFRYPHEVATKTTAYQSVTDVKRVFEDPDNREMGQWDYE 1074 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808 D ++ G H + Q + + + Sbjct: 1075 QQRKVKNRGLYLRNDFATPQFIQQGDQSPAATEVGTATHLVFQKLPLNDKEITVKQVQKE 1134 Query: 809 CTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS--YSEVSVSGKINC------ 857 + L + + + I + ++ + E + +N Sbjct: 1135 IQQLVKEHLINSAVAPFINMEGIAAFFQTDPGRQIIANGQNYHREEPFAMIMNGHELFKE 1194 Query: 858 ----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYTHIAQLSIYEK 909 + I++ G ID + + I + +YKT H PQ E+ I + QL +Y + Sbjct: 1195 VQARDDERILVHGIIDGYLETPKGITLVDYKTDHINPQYREFELAKITGRYRGQLELYRQ 1254 Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFI 934 L P + L V + Sbjct: 1255 ALNIMKPIPVVQMGLYLVELGEFIP 1279 >gi|325125238|gb|ADY84568.1| ATP-dependent helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 753 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 122/782 (15%), Positives = 240/782 (30%), Gaps = 135/782 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + +V+ N + ++ L Sbjct: 30 GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89 Query: 66 FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110 F L L + + Q ++ + + + D K+ L + + Sbjct: 90 FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++R T K ++++ + + Y+ + +++ +LDF+DLI+ T L K S Sbjct: 150 KNRLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 Q+ ++L+DE QDT+ Q+E+ R L + + + VGD QSIY Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + + ++L ++RST IL + V EN + Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + + R Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + +D VL R + + + Sbjct: 334 VLAKIKEEVDK---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D IKD+MA + + + D +SF ++ P + K+ +Y Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTAKLAAFADEMGGGIY 440 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E ++ ++ K + I AQ + + IL + Sbjct: 441 EAMRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500 Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571 ++ L EF T R + + L L + + + + + Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 IK + EE RL YVG+TRA ++L + + + + Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDE 648 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 D + S + + + + + + + D Sbjct: 649 DLDIVASTAPKSSTSFLDLDRLPFAKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQ 708 Query: 752 NE 753 E Sbjct: 709 VE 710 >gi|116513593|ref|YP_812499.1| superfamily I DNA/RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092908|gb|ABJ58061.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 753 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 123/782 (15%), Positives = 240/782 (30%), Gaps = 135/782 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + +V+ N + ++ L Sbjct: 30 GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89 Query: 66 FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110 F L L + + Q ++ + + + D K+ L + + Sbjct: 90 FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++R T K ++ + + + Y+ + +++ +LDF+DLI+ T L K S Sbjct: 150 KNRLQTPKQYEDSAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 Q+ ++L+DE QDT+ Q+E+ R L + + + VGD QSIY Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + + ++L ++RST IL + V EN + Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + + R Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + +D VL R + + + Sbjct: 334 VLAKIKEEVDK---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D IKD+MA + + + D +SF ++ P + K+ +Y Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTAKLAAFADEMGGGIY 440 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E ++ ++ K + I AQ + + IL + Sbjct: 441 EAMRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDLGYIKALKEEEA 500 Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571 ++ L EF T R + + L L + + + + + Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 IK + EE RL YVG+TRA ++L + + + + Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDE 648 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 D + S + T + + + + + + D Sbjct: 649 DLDIVASTAPKSSTSFLDLDRLPFTKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQ 708 Query: 752 NE 753 E Sbjct: 709 VE 710 >gi|110802763|ref|YP_697370.1| recombination helicase AddA [Clostridium perfringens SM101] gi|123342114|sp|Q0SWW4|ADDA_CLOPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|110683264|gb|ABG86634.1| recombination helicase AddA [Clostridium perfringens SM101] Length = 1270 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 125/659 (18%), Positives = 231/659 (35%), Gaps = 57/659 (8%) Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 R + + + +K T+ + +S + E L+ + E KM Sbjct: 278 GASFGRLKSVRKASVDDEKALEK---TKSLRDESKKIIENLRDNVFETSLEEAVLGMKKM 334 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174 + L + Y + K++ +LDF DL ++L +D + + + Sbjct: 335 YPLMKCLSGLIIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFK 394 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + +L+DE QD++ IQ ++ ++ +F VGD KQSIY F A P Sbjct: 395 DKFEEVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANP 447 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292 + L + ++ I L +FRS +I+ V+ +F + L D Sbjct: 448 ELFLEKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEK 503 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE------------SWTSYFDSLPQES 340 + +S E + + + E S + Sbjct: 504 EALNLGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDDELGEEEEDLD 563 Query: 341 SASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 S + AR I I+ ++ + GK R I+ KDI++L+R K+ Sbjct: 564 SIQLEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---DTF 620 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 Y I V + + I+ ++AL I + D+ + L+SP+F+F+ ++ Sbjct: 621 VDELGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSSLRSPIFSFTSEEF 680 Query: 454 FKICTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + + Y + + K ++ + Y+++ A + +F Sbjct: 681 ADLRLLNKDKYFFEIIKEVVDGIYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIW 740 Query: 506 LILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPP 559 + G + L + E S+ L I+ + Sbjct: 741 FLYSDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDM 800 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + N N VRIM++H +KGLE PVV L TG Q + + + +L Sbjct: 801 GSAKILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCI 860 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + K + K + E R+LYV TRA ++LII + + N Sbjct: 861 DVKKRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENW 919 Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 19/187 (10%) Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 E + +G I H ++Q I K +E ++ I Sbjct: 1084 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1143 Query: 829 TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871 + ++ + +S Y E+ +I ++ + + G ID Sbjct: 1144 QKFFKSELGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1203 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + +YKT + E E + Q+++Y+ L + L K Sbjct: 1204 FEEEDGYVLLDYKTDYVKEGEEEAFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1263 Query: 932 VFIIPQN 938 I + Sbjct: 1264 ELKISKE 1270 >gi|170016834|ref|YP_001727753.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20] gi|169803691|gb|ACA82309.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20] Length = 749 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 111/693 (16%), Positives = 206/693 (29%), Gaps = 136/693 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64 G ++ L ++ + V + ++ L + Sbjct: 30 GAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREMRERIAALLSEDVARDIWVS 89 Query: 65 RFSLLSSFFLTQKFT---PQKNII---TQEINKKSPDLKEKLKKSQDEFIK--------- 109 F L+ L + KN T + L +++ Sbjct: 90 TFHALAVRILRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDLNLDTNQYDPRTILGMISN 149 Query: 110 IRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ + + A + Y+ K++ +DF+DLI+ T DL + + Sbjct: 150 AKNDMLRPRDYAKAADNAFQETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQS---AP 206 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + Q+ ++ +DE QDT+ Q+ ++ L + + L VGD QSIY Sbjct: 207 EVLARYQQQFEYLHVDEYQDTNDAQYTIVNLLAQ----------RSKNLAVVGDADQSIY 256 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA +L ++ + L ++RST +IL + V + Sbjct: 257 GWRGANMNNILNFEKDYPN--------AHTVMLEQNYRSTQNILDAANAVINHNNERVPK 308 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW Q ++ + A Sbjct: 309 K---------------------LW-------TENGKGDQITYYRAQTEHDE-------AN 333 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I I + T + D VL R + I + Sbjct: 334 FILSNIQQLRETKHMA---------YSDFAVLYRTNAQSRNIEESL----VKANMPYSMV 380 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-------FKICTQR 460 + I D+MA I + +D+ +F ++ P + ++ Sbjct: 381 GGHKFYERKEILDIMAYMSLITNPDDNAAFERVVNEPKRGLGATSLTRLRELANRLNVSY 440 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + E SKF + +H L ++F + + L++ RQ + Sbjct: 441 MKAIESIELAPSITTKAASKFLTFAEMMHNLRQQSEFLNVTELTELVMTQSGYRQMLAEK 500 Query: 521 FGNE---VIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEV 572 + ++ L+EFL+ T + S+ + L V Sbjct: 501 NDPDSQARLENLEEFLSVTKEFDDKYQPEDPESIDPVTDFLGTTALMSDLDDFEEGDGAV 560 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFL+ +F Sbjct: 561 TLMTLHAAKGLEFPVVFLIGLEEGIFPLS------------------------------- 589 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + EE RL YVG+TRA +L + Sbjct: 590 ---RAMMDEDLLEEERRLAYVGITRAMKKLFLT 619 >gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] Length = 764 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 100/627 (15%), Positives = 189/627 (30%), Gaps = 140/627 (22%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y+ ++ +DF+DLI L K+ + + H+L+DE QDT+ Sbjct: 174 VAAVYTQYQRRLREGNAVDFDDLIGEVVGLFKQHP---QVVEYYRRRFRHVLVDEYQDTN 230 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+E+I +L + L VGD QSIY+F GA + + +R Sbjct: 231 HAQYELIHTLVGNG-------PDAPELAVVGDSDQSIYAFRGATIRNIEEFERDYPN--- 280 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + I L ++RST +IL + V + + Sbjct: 281 -----ATTILLEQNYRSTQNILAAANAVIAQNAGRRPKK--------------------- 314 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW D+ + + + + AR ++ I + R Sbjct: 315 LW------TDTGTGEKIVGYVADNEHDE--------ARFVSTEIDELTD----------R 350 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 +Q DI V+ R + + + + + I+D++A R + Sbjct: 351 GVQYGDIAVMYRTNNSSRALEDIF----IRAGVPYKVVGGTRFYERREIRDIVAYLRILD 406 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY---------IQKFANCGISK 480 + +D +S ++ P + + + I + Sbjct: 407 NPDDSVSMRRIINVPKRAIGDKAQAMVALHADNHGMSFGRALIDGAAGEIPTLGPRAKNA 466 Query: 481 FQHVIKYIHELIHIAQFCS--------PHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 ++ I L T IL + + + + +D L Sbjct: 467 IGGFVEMIQGLRDELPELRNEVTGMPDLGALVTRILDVTGYKAELEASNDPQDGARLDNL 526 Query: 530 DEFLNFTLRNEQN------------------SYSSLQELISELEQYPPTIKRAHSANHNE 571 +E ++ SLQ + + + Sbjct: 527 NELVSVAREFSSEAANQMAYGEEWDPESGEAQPGSLQAFLERVSLVADADQI-PDEGQGV 585 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+HTAKGLE PVVF+ F H Sbjct: 586 VTLMTLHTAKGLEFPVVFVTGWEDGQFPH------------------------------- 614 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + + E RL YVG+TRA ++L + + S+ + + + Sbjct: 615 ---MRAMGDPAELAEERRLAYVGITRARERLYLTRALTRSSWGSPMNNPASRFLAEVPED 671 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHH 718 ++++ S + + W + S Sbjct: 672 LLDWRRVEPEYSFSNEAWGSPAPSRRA 698 >gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 777 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 114/746 (15%), Positives = 208/746 (27%), Gaps = 138/746 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + + + L ++ Sbjct: 77 AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 133 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + K+ D + Sbjct: 134 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPAEAVAKLTDD---------SDDLA 183 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 184 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 240 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L P L VGD QSIY+F GA + + +R Sbjct: 241 TNHAQYVLVRELVGHDVTESGDDVPPAELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 298 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I L ++RST +IL+ + V + + Sbjct: 299 ------DATTILLEQNYRSTQNILSAANSVIARNSGRREKR------------------- 333 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 334 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALADRGE------ 371 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + I + I+D++A R Sbjct: 372 ---ITYNDVAVFYRTNNSSRSFEEVF----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 424 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + + A Sbjct: 425 LDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAE 484 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ + EL D +L R++ S + +D L+E ++ Sbjct: 485 KAIAGFVELLDELRGRLDE-DLGDLVESVLERTGYRRELESSTDPQDLARLDNLNELVSV 543 Query: 536 TLRN-----------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMT 576 + L LE+ + V +MT Sbjct: 544 AHEFSTDRANAAALDESLQAPDDEDVPDTGVLAEFLERVSLVSDSDEIPDDGAGMVTLMT 603 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +HTAKGLE PVVF+ +F H Sbjct: 604 LHTAKGLEFPVVFVTGWEDGMFPHMRALDDP----------------------------- 634 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 E RL YVG+TRA +L + + S+ + + + + Sbjct: 635 -----RELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPESRFLREIPQELIEWR 689 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENT 722 + S + A + T Sbjct: 690 RTAPAPSFSAPVSGAGRFGAPRAAPT 715 >gi|302023661|ref|ZP_07248872.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68] gi|330832685|ref|YP_004401510.1| superfamily I DNA/RNA helicase [Streptococcus suis ST3] gi|329306908|gb|AEB81324.1| superfamily I DNA/RNA helicase [Streptococcus suis ST3] Length = 759 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 92/589 (15%), Positives = 183/589 (31%), Gaps = 118/589 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPE---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPES 272 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST ++L ++V N + Sbjct: 273 --------KVVLLEENYRSTKNVLQAANEVIENNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ D + A +A I + Sbjct: 306 --LW-------TQNVQGDLITYYRARDENDE-------AIFVAGQIDQLHREGKA----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 -----YKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNI 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + K+ + ++ E Q Sbjct: 396 IANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + ++ L + + +L ++ E + + EFL+ T Sbjct: 456 FDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQEFLSVTKN 515 Query: 539 NE----QNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + + + L +L L+ +EV +MT+H AKGLE PVVFL+ Sbjct: 516 FDEKDVEEEETGLDKLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIGM 575 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF + YV Sbjct: 576 EENVFPLSRAAEEEDELEEERRL----------------------------------AYV 601 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 G+TRA L + ++ ++N + + + + + Sbjct: 602 GITRAEQTLYLTNANSRLLFGRTNYNQPSRFIREISSDLLDYQGLARPA 650 >gi|184201466|ref|YP_001855673.1| ATP-dependent DNA helicase PcrA [Kocuria rhizophila DC2201] gi|183581696|dbj|BAG30167.1| ATP-dependent DNA helicase UvrD1 [Kocuria rhizophila DC2201] Length = 818 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 134/816 (16%), Positives = 246/816 (30%), Gaps = 163/816 (19%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + + S + + T+ L + Sbjct: 96 AAAEMRERIAELVGDSARTMWISTFHSLCVRILRREAKTL-----GLNTNFSIYDSADSL 150 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ + P K + I + LK +L D ST Sbjct: 151 RLITQVAKQHELDP-KRFAPKAIQHRISALKNEL----------VDDETCLARASSTDPF 199 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + Y + + +DF+DLI T + + + + H+L+DE Q Sbjct: 200 ESAVAQVYRGYTQRLRAANAMDFDDLIGETVHMFR---AFPQVLEYYRRRFRHVLVDEYQ 256 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS--PRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 DT+ Q+ ++R L G S P L VGD QSIY+F GA+ + + +R Sbjct: 257 DTNHAQYALVRELVGGDSPGHTDESGIPPAELTVVGDSDQSIYAFRGADIRNITDFERDF 316 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST +IL+ + V S + + Sbjct: 317 PA--------ARTIMLEQNYRSTQNILSAANAVISQNADRRDKK---------------- 352 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW ++ + + + + AR IA I + Sbjct: 353 -----LW-------TAEGDGAPIVGYAAENEHEE-------ARFIAEEIDRLQDE----- 388 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 I+ D+ V R + + + + + IKD M+ Sbjct: 389 ----HGIRPGDVAVFYRTNAQSRSLEEIL----MRVGLPYKVVGGTRFYERKEIKDAMSY 440 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF------ANCG 477 R I + DD++ ++ P + I E + E + + A Sbjct: 441 LRAIANPADDITVRRIVNEPKRGIGDRAQGSIAALADREGISFSEAMHRLDEAPGLATRS 500 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534 + + + + +L +AQ S +L + + + ++ L E + Sbjct: 501 ANAIRTFAQLMDDLGELAQGASVTAVLEAVLEQSGYLEALRTSTDPQDESRVENLAELVA 560 Query: 535 FTLRNEQNSY-SSLQELISELEQYPPTIKR---------------------AHSANHNEV 572 E++ + L E + + + + + V Sbjct: 561 VVREFEKDRPEAGLGEFLEHVALVADADQIPSRPDTAAEGTASAQQIAQEVEEARDQGVV 620 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+HTAKGLE PVVFL +F H+ Sbjct: 621 TLMTLHTAKGLEFPVVFLTGMEHGIFPHQRSF---------------------------- 652 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 S+ EE RL YVG+TRA +L I + + S +S + + + Sbjct: 653 ------ADPSSMEEERRLAYVGITRARQRLYITRAESRSLWGQSQFNPASPFLDEIPAHL 706 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 K+ S + + PL Sbjct: 707 IDWKREGAAASGGWGSPVH--AGSGGGTRDPLRGSSWGAGAGSGATF------------- 751 Query: 753 EPYILNPSTIDTKGKTNLESLLS--DNQTFNRGLII 786 L+PS ++ + S+ +++ F RG ++ Sbjct: 752 --RRLSPSRVEPNREIPSLSVGDAVEHKAFGRGSVV 785 >gi|293569138|ref|ZP_06680445.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071] gi|291588185|gb|EFF20026.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071] Length = 744 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 121/760 (15%), Positives = 243/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 91 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + Q+ + + +L + + Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIQYLTVTELTKEVLDRSGYLEDLKIQNT 501 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687 >gi|268609040|ref|ZP_06142767.1| ATP-dependent DNA helicase PcrA [Ruminococcus flavefaciens FD-1] Length = 786 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 107/752 (14%), Positives = 225/752 (29%), Gaps = 137/752 (18%) Query: 8 SLNESYELIYKDLWPLPY--FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 + E E + L S + + + A ++ Sbjct: 116 AAGELKERLAAMLGEEEAVKINASTFHSACVRILRS-----EITALGYGSDFTIYDSDDS 170 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 ++ S + ++ + + S + + Q +D Sbjct: 171 QRMIKSVMAELDISEKQLAPKAVLGEISRAKDQMITPEQLRADAGQDYRK---------- 220 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + A Y+E + LDF+D++ T +L ++ + K +I++DE Sbjct: 221 --KMVAKIYARYQEGMRTANALDFDDILTLTVELFEQFPE---VLEKYRTRYKYIMVDEY 275 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q+ ++ L++ S + L VGD+ QSIY F GA + +L + Sbjct: 276 QDTNHVQFRLVSLLSD----------SHKNLCVVGDDDQSIYKFRGANIENILGFEDQF- 324 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 +I L ++RST IL + V + + Sbjct: 325 -------AGAKVIRLEQNYRSTQTILNAANSVIGNNVGRKAKT----------------- 360 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + + W D + A +A TI Sbjct: 361 ----LW-------TAGEQGDKVYWYKAVDETDE-------ANFVAETIKKYHKE------ 396 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + D VL R + I + I D IKD+ + Sbjct: 397 ----TGRYADNAVLYRMNAQSNAIERML----MKCGIPYRVYGGMRFFDRKEIKDVTSYL 448 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGIS 479 FI + D L F ++ P + + I R + ++ ++ ++ Sbjct: 449 AFINNHNDMLRFKRIINEPKRGIGDSTLALIEDISRDLKLSPFDVLKTCEEYAPLAKKVT 508 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538 ++ + +L ++ +F ++ + + I+ + E + ++ Sbjct: 509 SLRNAYEMFEDLTQKSEELPLDEFLDEVMEKTGYLDYLKTLENADTKIENVQELRSSVVQ 568 Query: 539 N-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 ++ +L + E+ Y ++V +MTVH+AKGLE +F+V + Sbjct: 569 YMNESEEPTLGGFLEEVALYTEAD--RDPETDDKVTLMTVHSAKGLEYDNIFVVGLDDGI 626 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + EE RL YV +TR Sbjct: 627 FPSSRSFDS----------------------------------EDDMEEERRLAYVAITR 652 Query: 658 ASDQLIICKHSNT----SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 A L + S ++ R ++ + + ++ + Sbjct: 653 AKKHLYLTNASQRMLFGQTQRNVTSRFMREIGSELIEKHDNAAAMRSKLAEEDKSMTEVH 712 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 +T + + + + +++ Sbjct: 713 SATLQQQLARNKTKPAAPKEAVTYTAGERVAH 744 >gi|262047039|ref|ZP_06019998.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US] gi|293381896|ref|ZP_06627864.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1] gi|260572616|gb|EEX29177.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US] gi|290921543|gb|EFD98577.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1] Length = 748 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 127/774 (16%), Positives = 243/774 (31%), Gaps = 145/774 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ Q L + Sbjct: 30 GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106 F L L + I + L + L + Sbjct: 90 FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D M + +A + Y+ +++ ++DF+DLI+ T L KK Sbjct: 150 KNDLLD--PEAFMQSALSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + + ++L+DE QDT+ Q+E+ +L + + + VGD QSI Sbjct: 205 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + ++ ++ +K ++L ++RST IL+ + V +N + Sbjct: 255 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW Q + Q+ ++ + A Sbjct: 309 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I + K + KD +L R + + I Sbjct: 334 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 D IKD+MA + + + D +S ++ +P + K+ T E Sbjct: 381 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADENHYN 440 Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + K + + I AQ + IL + Sbjct: 441 ILDAMGHVAESSINTRAAKKLSDFGTKLRDAIAYAQNGTVTGLTEKILADFDYTDALRAE 500 Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 E ++ LDEFL+ T R E++ + L + ++E+ N+ Sbjct: 501 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 558 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F + Sbjct: 559 VALMTLHAAKGLEFPVVFLIGMEDGLFPLQ------------------------------ 588 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMV 685 + + EE RL YVG+TRA +L + + N S D Sbjct: 589 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 644 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 +E+++ + +S K + ++ + +++ Sbjct: 645 DLHKEENEKLQSSFIQSSFEKQTAPFARKAERARAEVYTAKKASGAVGAEKKGW 698 >gi|293606186|ref|ZP_06688550.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC 43553] gi|292815446|gb|EFF74563.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC 43553] Length = 764 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 114/673 (16%), Positives = 214/673 (31%), Gaps = 143/673 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L +T + K ++ + Q ++ Sbjct: 94 LRAHHRDAGLPQSFQILD---VTDQLAAIKRLMKANGVDDEKYPP---RDVQRFINGAKE 147 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + ++ A + YE ++ V+DF +L++ +LL + A +R Sbjct: 148 EGLRPQDVEAYDAHRRRLIEVYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 204 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+ +Q++ +R L +FAVGD+ QSIY+F GA Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGAAIFAVGDDDQSIYAFRGA 254 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R ++I L ++RS IL + + G + Sbjct: 255 NVGNMSDFERDYAH--------GTVIRLEQNYRSFGHILDSANALIGHNSGRLGKN---- 302 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW Q + + ++ S + A+ I Sbjct: 303 -----------------LW-------TDQGEGEPV-------RVIEQPSDGMEAQWIVDE 331 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++I ++ ++I VL R + +I I Sbjct: 332 IRSLIHDGSL----------RREIAVLYRSNAQSRVIEHAI----FSAGIPYKVYGGLRF 377 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + IK +A R + + DD S++ ++ P + ++ R ++Y + Sbjct: 378 FERQEIKHALAYLRLMANPHDDTSWMRVVNFPTRGIGARTLEQLADAARAHDTSLYGAVA 437 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 G S + IH LI + + +L + + R G E ++ L+ Sbjct: 438 LVGGKGGSNLAQFAQLIHRLIEETRDLPLPEMVEHMLETSGLNAHYKAEREGAERLENLN 497 Query: 531 EFLNFTLRNEQNS------------------------------YSSLQELISELEQYPPT 560 E + L L + L Sbjct: 498 ELITAAAVFASEENYDGMPAGVVPDQATSSTLMPGVVDAPIVASDGLTPLAAFLSHAALE 557 Query: 561 I-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + V++MTVH AKGLE VF+ +F H++ Sbjct: 558 AGDNQAQQGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENS---------------- 601 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 L++S EE RL+YV +TRA +L I + ++ Sbjct: 602 ------------------ILEQSGLEEERRLMYVAITRARQRLYISLAQSRMLHGQTRYA 643 Query: 680 TWYDMVYDSFHND 692 + + Sbjct: 644 MRSRFLDEIPEEH 656 >gi|325684643|gb|EGD26798.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 753 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 122/767 (15%), Positives = 240/767 (31%), Gaps = 137/767 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + +V+ N + ++ L Sbjct: 30 GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89 Query: 66 FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110 F L L + + Q ++ + + + D K+ L + + Sbjct: 90 FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++R T K ++++ + + Y+ + +++ +LDF+DLI+ T L K S Sbjct: 150 KNRLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 Q+ ++L+DE QDT+ Q+E+ R L + + + VGD QSIY Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + + ++L ++RST IL + V EN + Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + + R Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + +D VL R + + + Sbjct: 334 VLAKIKEEVDQ---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D IKD+MA + + + D +SF ++ P + K+ +Y Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTSKLAAFADEMGGGIY 440 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E I+ ++ K + I AQ + + IL + Sbjct: 441 EAIRNVELAPISSSAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500 Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571 ++ L EF T R + + L L + + + + + Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 IK + EE RL YVG+TRA ++L + + + Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFI--GEIK 646 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 DE + + T + ++ + ++ + + Sbjct: 647 DEDLDIVASTAPKSSTSFLDLDRLPFAEKSQAKAAQPAKIHRASKAA 693 >gi|206900332|ref|YP_002251111.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12] gi|206739435|gb|ACI18493.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12] Length = 625 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 106/604 (17%), Positives = 226/604 (37%), Gaps = 114/604 (18%) Query: 87 QEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFK--STLASLTLAKYLNAHYEEAKKK 143 ++I K K+ + +++ +++D+ T + F + + + + YE+ ++ Sbjct: 122 KDILKDLNRAKDYNARDIKEKISRLKDQLITPQEFSSLISNSFDEIVLEVYKRYEKELRR 181 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF DL++ + LL+++ I + +I ++L+DE QDT+ Q+E+ + + D Sbjct: 182 NNALDFADLLLYSIRLLQEKPA---ICGFLQDKIEYVLVDEYQDTNKAQYELFKIIVLD- 237 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + VGD+ QSIYSF GA+ + + R ++ + +I L + Sbjct: 238 ---------KQKFSVVGDDDQSIYSFRGADYQNIFRLEKDFKN--------LRVIFLTKN 280 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL + + + + + +LW + Sbjct: 281 YRSTQQILEIANVLIANNDKRYPK---------------------ELW----------SD 309 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 + ++ F +L +E A+ +AR+I ++ + + +I VL R Sbjct: 310 KKDGTYPVLFRALNEEDEANFVARQIKLEVA--------------KGRRWSEIAVLYRTN 355 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + + I D +KD++A I + D +S ++ Sbjct: 356 RQSRSFEEAL----IRNNIPYKVIGGMSFFDRKEVKDIVAYLNVIYNPNDIVSMKRIINV 411 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503 P + I ++ ++ E +++ + + + + L+ + + D Sbjct: 412 PRRGIGDATFNMIREYYNKGYSLLEAVKEVS-KIKKEVKSFYELWTYLLVLKDSLTLRDL 470 Query: 504 FTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560 + I+ +F ++ E ++ L E ++F + +L E ++ L Sbjct: 471 ISTIINKTNYLSEFENQEKKELENRMENLMELMDFADNFSGKAQDTLGEFLTHLSLTNSK 530 Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 ++ V ++T+H+ KGLE VVFLV + H Sbjct: 531 LESTLEEGK--VSLITLHSVKGLEFEVVFLVGMEEGILPH-------------------- 568 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680 K +E RL YVG+TRA ++L + + + + R Sbjct: 569 ---------------YNATTKEEIQEERRLCYVGITRAKEKLYLSYAAKRYSRYQEPSRF 613 Query: 681 WYDM 684 ++ Sbjct: 614 LEEI 617 >gi|322411887|gb|EFY02795.1| DNA helicase II [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 772 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 200/637 (31%), Gaps = 123/637 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ LDF+DLI+ T L + Q +I +DE QD Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDSNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + +Q + D + A +A TISNM + Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------AQ 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KD VL R + I I I+DL+A Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481 + + D++SF ++ P + K+ +++ E Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQSI 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + I +L S D +L + E I+ ++EFL+ T Sbjct: 457 MDLANIIGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516 Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +++ L +++L T EV +MT+H AKGLE PVVF Sbjct: 517 FDKSSASQEEDETGVDRLGRFLNDLALIADTD--DSQTEAAEVTLMTLHAAKGLEFPVVF 574 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF EE R Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA + L + + + KS+ + + + + + Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYQGLARPAQSSFGVR 660 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + + T + L ++ + + + Sbjct: 661 FSTDKHTQFGQGMSLSEALQARKAQAQVRQSPQPMQA 697 >gi|262282913|ref|ZP_06060680.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA] gi|262261165|gb|EEY79864.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA] Length = 762 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 95/591 (16%), Positives = 188/591 (31%), Gaps = 123/591 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRPPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTMEKIRDFASSQEMSLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + + +L +++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLREHLDDYTVTELVEAVLEKTGYAAALVAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQNSYSS--------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 +++ +S L +++L T ++ V +MT+H AKGLE PVVFL Sbjct: 516 FDESPDNSSDESGLDKLSRFLNDLALIADTDDGDQESSE--VTLMTLHAAKGLEFPVVFL 573 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 V VF + Sbjct: 574 VGMEENVFPLSRASEDEDELEEERRL---------------------------------- 599 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 YVG+TRA L + ++ K+N + + + + + Sbjct: 600 AYVGITRAEKILYLTNANSRMLYGKTNYNQPSRFLREISSDLLDYQGLARP 650 >gi|300813139|ref|ZP_07093516.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495893|gb|EFK31038.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 753 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 123/782 (15%), Positives = 240/782 (30%), Gaps = 135/782 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + +V+ N + ++ L Sbjct: 30 GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89 Query: 66 FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110 F L L + + Q ++ + + + D K+ L + + Sbjct: 90 FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++R T K ++++ + + Y+ + +++ +LDF+DLI+ T L K S Sbjct: 150 KNRLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 Q+ ++L+DE QDT+ Q+E+ R L + + + VGD QSIY Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + + ++L ++RST IL + V EN + Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + + R Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + +D VL R + + + Sbjct: 334 VLAKIKEEVDQ---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D IKD+MA + + + D +SF ++ P + K+ +Y Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTSKLAAFADEMGGGIY 440 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E I+ ++ K + I AQ + + IL + Sbjct: 441 EAIRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500 Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571 ++ L EF T R + + L L + + + + + Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 IK + EE RL YVG+TRA ++L + + + + Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDE 648 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 D + S + + + + + + + D Sbjct: 649 DLDIVASTAPKSSTSFLDLDRLPFAKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQ 708 Query: 752 NE 753 E Sbjct: 709 VE 710 >gi|293560000|ref|ZP_06676508.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162] gi|291606088|gb|EFF35514.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162] Length = 744 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 120/760 (15%), Positives = 243/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 91 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A +++ +D +SF ++ SP I K+ + E + Sbjct: 382 GHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687 >gi|154249214|ref|YP_001410039.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] gi|154153150|gb|ABS60382.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] Length = 1130 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 151/935 (16%), Positives = 313/935 (33%), Gaps = 126/935 (13%) Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + D L ++L YE N DF+ ++ T ++L + + Sbjct: 226 LLDVMKKAGNSFRVLRLISLIAS--ELYEAETIDNFEYDFKGVLEKTIEVLNNNEE---V 280 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R + +I++DE QDT+ +Q + + H+ +F VGD KQSIY F Sbjct: 281 RKYYQERFKYIIVDEFQDTNELQRMIFDFI----------HTDKNYIFYVGDRKQSIYRF 330 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV------------ 277 GA+ ++ +KRA + K+ I+ L ++RS ++ +KV Sbjct: 331 RGADVSVFVKTMDEFEKRAKISPDKYRILSLQTNYRSHEFLVDYFNKVSRDSIFRNEIYD 390 Query: 278 -------FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQVVSQHDSQCNPQQESW 329 F+ + +S+D H + R+ LW ++ + Sbjct: 391 MLSNLNGFNSNKPISEISDDEAKLYLHEAFRLRYRDLYDKLWFLDEDISNAHIKKLESEV 450 Query: 330 TSYFDSLPQESSA---------------SILARRIAYTISNMIGTDTIFSNGKK-----R 369 D L + S A +A I N++G + + +K R Sbjct: 451 IPQIDFLNESISRVSYLSIVSLDEKVSPEDEANLVAMAIKNLVGKEITIFDKEKNDYVTR 510 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 ++ KDI +L K I + R + I + I+ +++ I Sbjct: 511 KVEYKDIAILSYK---LAGIESIYRETFGKFNIPLYVVKGRGFYKRPEIRAVISALSVIQ 567 Query: 430 SQEDDLSFVCMLKSPL------------FNFSEDDIFKICTQRHETE--TVYEYIQKFAN 475 + +D +FV +P F + R E + ++ +K Sbjct: 568 NPNNDYNFVEFFLTPFVESTDFSPSFDKFKILHKIVLNARKLRENGERISFFQSAKKLGK 627 Query: 476 CGISKF-QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFL 533 + + +I+ + + + F P + + + + + + + L Sbjct: 628 EDLPDYVSEMIELVQKYDELKYFLRPAEVLKGFINESYYLAKLSKFPNSVQRLKNVKKLL 687 Query: 534 NFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 + + +++S L L+S++E+ T S N V++MTVH +KGLE +VFLV Sbjct: 688 DQATEFNQQASTFSELIRLLSKVEELQETEASEVSEEDNVVKMMTVHASKGLEYNIVFLV 747 Query: 592 DTG-------SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 + F +I + + + +L + + Sbjct: 748 NNNFNEMESDEVFFPSDDNGGRYIHIKRFIENYKDKFNINKDEYKKLKGEL-EAELIYDE 806 Query: 645 EEYNRLLYVGMTRASDQLIICKHSN--TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E R +YV +TRA + L + ++ + ++ + ++ + ++ Sbjct: 807 TEILRKIYVAITRAKEMLFVVTYNTNSSRGKRGKTAGQYLAHNEFKTITIDKKQIDEMVK 866 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 S++ E+ E E ++ E + ++ I L I ++ ++ ++N + Sbjct: 867 SLSISEFSGEENKKLLDEEKIRKQIEDFSNIGYKRYISPTLLYNITDEKSDKELVNELEV 926 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQV-------------------IFTLPEHKRKN 803 D + L K+ + + T E Sbjct: 927 DFEENMPLFEGQEKQDIL-------KIFEKNQEKQKRSKSEVSLLLSSLLETSREVIEGK 979 Query: 804 FITSYC---TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP 858 I + L E L I L+ ++ S SE ++ + Sbjct: 980 NIHRRLMSVQRYPDLLNLVERGELPEKI---LKADVIKYLFENSDKVISEWRIAKSVVID 1036 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 K + G D++ I++ ++K+ + E + QL Y +LKD + Sbjct: 1037 GKKYTLFGVPDRVFFKDGKIYVVDFKSSYLKDGSEE--VEKYKFQLQFYMYMLKDF--GE 1092 Query: 919 SLVCLLIYVSEPKVFII--PQNKLNKAFAEISTKI 951 L+ V + P + + A++ + Sbjct: 1093 IAGGYLVGARSGFVIRVERPGDDFIELLAKLIRNL 1127 >gi|257878463|ref|ZP_05658116.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933] gi|257882882|ref|ZP_05662535.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502] gi|257889340|ref|ZP_05668993.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410] gi|257894352|ref|ZP_05674005.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408] gi|260560050|ref|ZP_05832228.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68] gi|314937828|ref|ZP_07845145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04] gi|314941626|ref|ZP_07848506.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C] gi|314948873|ref|ZP_07852242.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082] gi|314951009|ref|ZP_07854076.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A] gi|314993010|ref|ZP_07858406.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B] gi|314996457|ref|ZP_07861500.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01] gi|257812691|gb|EEV41449.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933] gi|257818540|gb|EEV45868.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502] gi|257825700|gb|EEV52326.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410] gi|257830731|gb|EEV57338.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408] gi|260073885|gb|EEW62209.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68] gi|313589439|gb|EFR68284.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01] gi|313592533|gb|EFR71378.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B] gi|313596864|gb|EFR75709.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A] gi|313599517|gb|EFR78360.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C] gi|313642859|gb|EFS07439.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04] gi|313644663|gb|EFS09243.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082] Length = 747 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 120/760 (15%), Positives = 243/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 34 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 94 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A +++ +D +SF ++ SP I K+ + E + Sbjct: 385 GHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 445 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 690 >gi|77919306|ref|YP_357121.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Pelobacter carbinolicus DSM 2380] gi|77545389|gb|ABA88951.1| ATP-dependent exoDNase (exonuclease V) beta subunit [Pelobacter carbinolicus DSM 2380] Length = 1118 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 144/909 (15%), Positives = 298/909 (32%), Gaps = 114/909 (12%) Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNI------------ITQEINKKSPDLKEKLK--- 101 + + + L+ LT+ T +K + + K+ L E L Sbjct: 276 AASADALPIWRGLAELVLTRSGTVRKRLDKNCGFPPGKQEPAASMKKEMARLLETLAADE 335 Query: 102 ---KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 + E + ++ A TL A K+ DF ++ + Sbjct: 336 GVLELFAEVRSLPPVVYEPDQWQVLEALTTLLPRAVAELWLVFKEQGQCDFVEVALAAGR 395 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 L + D + +D I HIL+DE QDTS Q+ +++ LT + G R+LF Sbjct: 396 ALGEVDAPTDLLLHLDSRIRHILVDEFQDTSWGQFLLLKKLTAGWQQGDG-----RSLFL 450 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD QSIY F AE L+ + + + L +FRS A ++ V++VF Sbjct: 451 VGDPMQSIYRFREAEVGLYLQARHH-----GIHQLRLEALYLSTNFRSQAGVVDWVNRVF 505 Query: 279 -SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 + + + S T ++R G + Sbjct: 506 PELFPPREDEALGSVTYAASVAARDVLDGP-----------------------AVTCHPM 542 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 A ++ + +R + VLVR R I R Sbjct: 543 AGRDDRAEALQVVDLVRQ-----------ARRADPEGTVAVLVRARTHLSQILTAFRE-- 589 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 + + L D +DL+AL R +L D ++++ +L++P S D+ +C Sbjct: 590 --AGLPFRAQEIDALADRSVAQDLLALTRALLHPGDRVAWLAVLRAPWCGLSLADLHALC 647 Query: 458 -----TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 E + + + + G + + + +++ + S A Sbjct: 648 GETPDATLPELLRQPQRLMRMSADGRMRVERCLGVLNQSLSQRGRVSLRMLVEGAWLALG 707 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 G G + L L+ + + + ++ A + + Sbjct: 708 GPGCL-DDAGLVDAEALFGLLDQL-----DYGGDMLPMEGLADKLSKLFAAPDPAADDTL 761 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 ++MT+H AKGLE V L G + + + P+ +SR+ I Sbjct: 762 QVMTIHKAKGLEFDTVILPGLGRRPRTEDAPLMRWLELPETGLLLAPLAPLDGQSRDPIY 821 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 + + K+ E R+LYV TRA +L + ++ S + + + Sbjct: 822 DAIGRVEKQKCDLEIARVLYVAATRAKKRLHLLGYARPSRDGEFRPSGGSFLEKLWPAVG 881 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 +R + + + +T++Q+ P + + Sbjct: 882 DRFDGL------------------NPELTDSSDAPKTVRQMRLLGSDWVLPALPSTSAQS 923 Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR--------KNF 804 +L+PS+ + ++ + G ++H L+ I + Sbjct: 924 SMEVLSPSSTAHHSQGTTLMPETE-DGRHIGTLVHACLERIANEGLEHWSIGRVEKERPT 982 Query: 805 ITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862 + + + ++ +++ L + + S + ++ Sbjct: 983 LCHRLGRMGVAVDRCMQAADRIVEAVSNTLNSDRGRWILGKHEKS--ACELSLSGVLDGR 1040 Query: 863 IISGRIDQISISQQNI-FIFEYKTH--HHVPQEI--EHIPYTHIAQLSIYEKILKDSYPN 917 II ID+ + ++ + ++ +YKT + ++ E + + QL +Y ++ + P Sbjct: 1041 IIHAEIDRTFVDKEGVRWVVDYKTGDSKGMADDVFFEQQAHIYKGQLELYARLFQALEPG 1100 Query: 918 KSLVCLLIY 926 + L + Sbjct: 1101 CHVRTALYF 1109 >gi|225181788|ref|ZP_03735226.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] gi|225167562|gb|EEG76375.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] Length = 694 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 118/682 (17%), Positives = 218/682 (31%), Gaps = 126/682 (18%) Query: 23 LPYFQVSDINKYVSLSMETGNPTILKK-AQTLQQASQTQCIEERFSLLSSFF-LTQKFTP 80 I + V + T A+ L++ + F + S LT Sbjct: 42 AAEELRGRIEELVGTAPGIWASTFHAASARILREHADRLGYTSSFVIYDSADQLTVIKNV 101 Query: 81 QKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 KN+ + + K + + ++++E + + F S + Y+E Sbjct: 102 MKNLNLDDDTRFKPRGVLSAISRAKNEMMDVDTYDEAADNFYS-----RTVAKVFRSYQE 156 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 + N LDF+D+++ LL++ + ++ +IL+DE QDT+ +Q+E++R L Sbjct: 157 RLRLNNALDFDDMLLLVVKLLREHPE---VLKAYQEKFRYILVDEYQDTNRVQYEIVRLL 213 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 R L VGD+ QSIY F GA+ + +L +R + +++ Sbjct: 214 ----------GGVHRNLCVVGDDDQSIYQFRGADIRNILDFERDWPE--------AEVVK 255 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L ++RS+ +IL V + LW Sbjct: 256 LEENYRSSGNILEAAWHVVKHNAGRKDKK---------------------LW-------T 287 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 SQ + D AR IA I + VL Sbjct: 288 SQEAGDPIQVYTAQD-------EQQEARYIAGEIRKL-------------SATYDQFAVL 327 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 R + I IS + +KD++A R + + D +S + Sbjct: 328 YRTNAQSRAIEDAL----IRENISYQMVGGVRFWERKEVKDILAYLRVLDNPADGISLLR 383 Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC------GISKFQHVIKYIHELIH 493 ++ P + K+ E + + A+ + K + + L Sbjct: 384 VINVPRRGIGATSVEKLNNMASERGITFYEALRLADEAGLGSAPLKKVKSFAALLENLQQ 443 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQE 549 + ++ S + ++ + + ++ + L EFL +++ SL Sbjct: 444 MREYLSVDELTEQVMIKSGYLDELRAEGTDQAQSREENLLEFLTVAQDFVKESEDKSLTA 503 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 +++L V +MT+H AKGLE PVVF+ +F H Sbjct: 504 FLTQLSLVSDLDTLEDDGGP-RVVLMTMHAAKGLEFPVVFVAGMEEGIFPHMRSFDT--- 559 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 EE RL YVG+TRA +L + N Sbjct: 560 -------------------------------ADGIEEERRLCYVGITRAEKRLYLTSAMN 588 Query: 670 TSNEKKSNQRTWYDMVYDSFHN 691 + + + + Sbjct: 589 RNLFGRRMHNMPSRFLRELPDA 610 >gi|255009480|ref|ZP_05281606.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] gi|313147251|ref|ZP_07809444.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] gi|313136018|gb|EFR53378.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] Length = 786 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 103/689 (14%), Positives = 218/689 (31%), Gaps = 129/689 (18%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A + + + + Y E ++ +DF+DL++ T L + + + ++ ++L+ Sbjct: 168 AAAKMPAIRDIYSRYRERCRQAGAMDFDDLLVYTYVLFRDFPE---VLARYREQFRYVLV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L + Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I + +L ++RST I+ + + E S Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + + +Y D + + I+ + Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 D +L R + + R + IKD++ Sbjct: 349 ------HDYGYSDFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDII 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474 A R +++ D+ +F ++ P + + KI +++ + + Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIIKAATDNNVSLWTVLCEPITYGLTIN 458 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 +K Q + I + + + ++ T I+ E + ++E Sbjct: 459 KNTHTKLQGFRELIEQFMTEVAEKNAYEIGTAIIRQSGIINDVCQDNLPENLSRKENIEE 518 Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 +N + E N+ SL + +SE+ + +V +MTVH+AKGLE Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 VF+V +F E Sbjct: 578 RNVFVVGLEENLFPSGMAGDSP----------------------------------RAME 603 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV +TRA + + K + + D ++ + Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSV 663 Query: 706 KDEWIAYEWS-----THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY--ILN 758 + + + P + + E+ + + + ++ ++ Sbjct: 664 DEGAGRFRREMEEGYSRRPSAERFSARPSADRPQRERPKEQIIAPTVPRNLKRVSGTTVS 723 Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786 PS G T ++ + +++ F G +I Sbjct: 724 PSAAPGAGITGVQPGQTIEHERFGIGQVI 752 >gi|301165556|emb|CBW25127.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ] Length = 752 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 104/633 (16%), Positives = 210/633 (33%), Gaps = 121/633 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 YE K +DF LI L +K + + + ++L+DE QDT+ Q Sbjct: 175 FYQEYEAELHKANAVDFGSLITGVIQLFEKFPD---VLKRYQERFKYLLVDEYQDTNRAQ 231 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +E+++ L+E R + VGDE QSIYS+ GA+ + +L + + Sbjct: 232 FELVKMLSEQ----------NRNVCVVGDEDQSIYSWRGADIRNILDFEEVF-------- 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I++L ++RS+ +I+ V + +G Sbjct: 274 SDAKILKLEQNYRSSKNIIEAATHVIARNSQRKGKDMW---------------------- 311 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + F+ + +A I + Sbjct: 312 ------TNNPHGEDIDIVECFNDKTEG-------EFVAQKIRELSKEGHP---------- 348 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 K++ V R + LI R I + IKDL+A R +++++ Sbjct: 349 FKEMAVFYRTNTQSRLIEDNLR----KNNIPYRVVGGVKFYERKEIKDLIAYMRIVVNEK 404 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------------IQKFANCGIS 479 D L+ ++ P + K+ +++E + + S Sbjct: 405 DSLALSRIINVPARGIGATTLRKLENEAVTNNCSLWEMLDTVVANPENYKHIRLSAKVKS 464 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 H++ I+E+ +P + +L S E ++ L+E N Sbjct: 465 ALSHLVTLINEVRVSVDNVAPSSLYEKLLHESGYWDFLKSSKDYESQARMENLEELQNAI 524 Query: 537 LRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 ++ E+++ SL + + + + + N EV +MT+H AKGLE VF+ Sbjct: 525 VQYEESNKSPSLLNFLETITL-DTSGEGDNPENTGEVSLMTIHGAKGLEFLHVFVTGAEE 583 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F ++ EE RL YV M Sbjct: 584 NIFPSYKSL---------------------------------ENGETAIEEERRLFYVAM 610 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++L I + +++ + + +K + + + W + + Sbjct: 611 TRAMEKLYITFAQGRMLFGQLRFNGPSRFLHEIPNKYYQWRKPNGSTMSSGNSWDSEDDF 670 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + ++ + E + Q+ ++ + Sbjct: 671 DDYNQDQSYDEGEAVYQVASFKEEKSAPKAKFP 703 >gi|160879499|ref|YP_001558467.1| UvrD/REP helicase [Clostridium phytofermentans ISDg] gi|160428165|gb|ABX41728.1| UvrD/REP helicase [Clostridium phytofermentans ISDg] Length = 807 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 93/530 (17%), Positives = 180/530 (33%), Gaps = 77/530 (14%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+ K N LDF+DLI+ T +L + + +I++DE QDT+ IQ Sbjct: 172 VYKEYQRRLKTNNALDFDDLIMKTVELFQSNTEA---LNYYRNRFRYIMVDEYQDTNTIQ 228 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +++IR L + L VGD+ QSIY F GA + +L ++ Sbjct: 229 FKLIRLLAH---SLNEYNEVEHNLCVVGDDDQSIYKFRGANIRNILDFEKEFP------- 278 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 +I+L ++RST +IL ++V + S LW Sbjct: 279 -DAVVIKLEQNYRSTKNILNAANEVIHNNLGRKDKS---------------------LW- 315 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + +Q S+ Y + A ++ +I + D I Sbjct: 316 ------TDNEDGEQVSFCQYDTDFAE-------ATQVVDSIKTLNDQD---------GIS 353 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + +L R + + + IKDL+A + I + Sbjct: 354 FNNFAILYRTNAQSRVFEEKM----IQRSVPYKIIGSINFYQRKEIKDLLAYLKTIDNGL 409 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN-----CGISKFQHVIK 486 D ++ ++ P + ++ + Y+ ++ N SK + Sbjct: 410 DGIAVKRIINVPKRGIGLTTLDRVEEFSVKNNMSFYDALRHAENIPGLGRSTSKITSFVS 469 Query: 487 YIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-- 539 +I + + + D IL ++ D ++E +N + Sbjct: 470 FIETIKSKLSSDTFTLKDLMEEILEGTGYLKELEEADDESAEDRIGNINELINKIVTYEV 529 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E +L + E+ + + N V +MT+H+AKGLE P V+L +F Sbjct: 530 EATEPPTLSGFLEEVALVADID--SLEEDSNHVVLMTLHSAKGLEFPYVYLCGMEDGIFP 587 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 ++ ++ +++ I + + ++NR Sbjct: 588 SYMSINAENPELEIEEERRLCYVGITRAMKQIHLSAARQRMMRGETQFNR 637 >gi|322417761|ref|YP_004196984.1| UvrD/REP helicase [Geobacter sp. M18] gi|320124148|gb|ADW11708.1| UvrD/REP helicase [Geobacter sp. M18] Length = 730 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 94/602 (15%), Positives = 184/602 (30%), Gaps = 116/602 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y+E K+ DF DL++ T L ++ + K Q I++DE QDT+ Sbjct: 165 LARVYRCYQERLKRCNAADFGDLLLLTVQLFEEHPE---VLDKYLQRYRWIMVDEYQDTN 221 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q+ +++ L S + L VGD+ QSIY + GA+ + +L ++ Sbjct: 222 PVQYRLVQLLAG----------SRKNLCVVGDDDQSIYGWRGADIRNILEFEKDFP---- 267 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +++L ++RST IL V + + Sbjct: 268 ----GVKVVKLEQNYRSTKTILDGAWHVVQKNKGRKPKK--------------------- 302 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW ++ + + + + A+ + I + + Sbjct: 303 LW-------TDNPEGERIVYRTLPNEWEE-------AKLVCREIERFLLEGGDLAQ---- 344 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + V R + +I + L +KD++A + + Sbjct: 345 ------VAVFYRTNAQSRVIEDAMVA----ASVPYHMVGGVRFYARLEVKDILAYLKVLD 394 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQ 482 + DD+S ++ +P + KI + Y+ + + A K Sbjct: 395 NPSDDVSLKRIINTPPRGIGNTTVQKISDFAAGKGIPFYDAMLEGAYGPLLPAAAKGKVA 454 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRN 539 + + + + I+ + E I+ L E + Sbjct: 455 AFANELDGYKTLTEKLPLSELTAAIINDSGYYARLKQLGSDEAQERIENLQELVTAMQVY 514 Query: 540 EQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E L + + ++ ++ + +MT+H+AKGLE P+VF++ ++F Sbjct: 515 ETGPGEKGLADFLEQVALVS-DLEHEGEGKKSSATLMTLHSAKGLEFPLVFMIGMEERLF 573 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H EE RL YVGMTRA Sbjct: 574 PH----------------------------------ARALENPEQMEEERRLCYVGMTRA 599 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +L + + + D + ++D S Sbjct: 600 KKRLFLLNVRRRHIFGQEQMNPPARFIADIPRELLDSGDLWQRPEPSRDSSSHNLASLFE 659 Query: 719 PE 720 E Sbjct: 660 DE 661 >gi|260220997|emb|CBA29121.1| hypothetical protein Csp_A10560 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1131 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 159/944 (16%), Positives = 329/944 (34%), Gaps = 108/944 (11%) Query: 25 YFQVSDINKYVSLSM-ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN 83 V + + ++ + T + L++A + F L T K TP+K Sbjct: 262 SDVVQQLLWASAKALGASSLKTCTEAGSELEKALTARDATAIFKAL----FTDKGTPRK- 316 Query: 84 IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143 + E ++++Q + + + ++ + L++ L Y K++ Sbjct: 317 ------LSEKVVGIETVREAQALLAETKAAIDQHQAWLHQQRMARLSRGLLQDYAALKRE 370 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 +D DL LL ++S W++ ++D + H+LIDE QDT+ +QW+ + + Sbjct: 371 RGWIDMGDLEQAALRLLSDEEISGWLQERLDARVKHLLIDEFQDTNPLQWQAL----STW 426 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 G + + +F VGD KQSIY F AEP+ K G + ++ + Sbjct: 427 LQGYSGAGNRPGVFIVGDPKQSIYRFRRAEPQVFRAA-----KAFVVEGLQGDVLSCDHT 481 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 R+ I+ +V+ ++A + T G+V ++ + + Sbjct: 482 RRNAQAIIGLVNTAMLGAQDAGEFEDYRPHTSE-----SVDAGSVWKLPRIERTAKPEED 536 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + P+ S L + + G+ ++ +DI+VL RKR Sbjct: 537 GSEDLVWRDSLTTPRHESEDTLKTLECRQAARWLAGQLSGRGGQ---LRPQDIMVLARKR 593 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + L+ L+ I ++ L + ++DL+AL ++S DLS LKS Sbjct: 594 ERLTLMQQELAALR----IPAQQPEKNELGEMPEVQDLVALLDVLVSPAHDLSLARALKS 649 Query: 444 PLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQH--------------- 483 PLF S++D+ + +R + + + +F Sbjct: 650 PLFGASDEDLVDLSLLHQTARRQARAADPDALVPGWMAVLCEFAAADPDVEGGLPLSQRM 709 Query: 484 --VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTL 537 + + Q HD + I +F + V+ + LN L Sbjct: 710 LSAARSLTRWQGWVQSLPVHDALSAIYDDGDVLARFAAASPAVLRESVLANVRALLNAAL 769 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + YS+ L+ L I A+ VR++T+H AKGLE+P+V L+DT ++ Sbjct: 770 QVDGGRYSTAYTLVRALRAGG--IPAPVRADAGAVRLLTIHGAKGLEAPLVILLDTDAEG 827 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + + P P +++ V D + + + E LYV +TR Sbjct: 828 TRPESMGVLVDWPGEAAYPRKFVFLASESRPPACVVDTLALEQTARAREELNALYVALTR 887 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 L++ + + + +W+ + + + ++ +S E Sbjct: 888 TQSTLVLSSTAPH----REREGSWWKRLQELAADVAPSTALEGVDSAESTE--------- 934 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 +T + + + L + E P I +LES Sbjct: 935 ---------SDTAEPFALWELPTEGLKRKVPLAPMEYARAAPELIAVTEPESLES----- 980 Query: 778 QTFNRGLIIHKLLQVIF----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833 G +H+LL+ + +P+ + + +L Sbjct: 981 ---RIGQAMHRLLEWLPLREGQVPDADAWTPEQCAQAARTFSLTEAQMQQAQRMAQGILG 1037 Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQ 891 A + + + + + + + D++ + ++ ++K+ Sbjct: 1038 GE-GAWAWRRSALAWHANEVALTHGGRTLRL----DRLVQRRDTAAWWVLDFKSSASPQD 1092 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + E QL Y L YP + + + + ++ I Sbjct: 1093 QPELCA-----QLREYRAALTQIYPGEGVHTAFL-TPQGRLIEI 1130 >gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC 15703] gi|118765295|dbj|BAF39474.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC 15703] Length = 879 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 119/726 (16%), Positives = 218/726 (30%), Gaps = 123/726 (16%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P + +S + + I L+ + Sbjct: 70 AAAEMRERLVTLVGPEAEHMWISTFHSACVRILRRDGKEI-----GLKSGFSIYDTADS- 123 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA- 125 L K + + K D K L +D+ K + + A Sbjct: 124 ERLVKLIAADLNIDTKRYTPRMLLGKISDCKNALVSWKDQLKKANCDYTPGQRGYQVSAG 183 Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 L + A Y+ +DF+DLI+ T +LL+ + +I +DE Sbjct: 184 DVDELVAVVYAEYQHRLALANAVDFDDLIMRTVELLQT---CPQVSEYYRHRFRYIFVDE 240 Query: 185 VQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 QDT+ Q+ ++R L+ D P + VGD QSIY+F GA+ + + Sbjct: 241 YQDTNHAQYVLVRELSGIDSDEQPDPQARGAGRVGPSWITVVGDSDQSIYAFRGADIRNI 300 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 ++ I L ++RST IL + V + EN + Sbjct: 301 QDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK--------- 343 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 LW + +A A IA I+ + Sbjct: 344 ------------LWTALGQGDKIVGYAA--------------DNAQQEAGWIANEIARIH 377 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + + +DI ++ R + + + + + Sbjct: 378 TEE---------DVAYRDIAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERRE 424 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFAN- 475 +KD +A + I++ D+++ +L P T +E I+ Sbjct: 425 VKDAIAYLQAIVNPADNVNVRRILNVPKRGLGARAEGLVAGYADAHGLTFFESIEHMDQI 484 Query: 476 -----CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 +HEL A P + +L ++ + Sbjct: 485 EGMTGRTTKPLGAFRDLMHELADFAKEHDSKPSEVVAEVLDKSGLLEELQRSEDPQDASR 544 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 +D L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 545 VDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGEGEDSGKVTMMTLHTAKGL 604 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P VFL F H+ S Sbjct: 605 EYPYVFLTGMEQGTFPHQ----------------------------------RAMEDTSE 630 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E RL YVG+TRA +L + + + + ++N + + K+ + Sbjct: 631 LSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMPSQFLDEIPDELIDWKRREAGVE 690 Query: 704 INKDEW 709 + W Sbjct: 691 RMRASW 696 >gi|269120962|ref|YP_003309139.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386] gi|268614840|gb|ACZ09208.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386] Length = 724 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 115/691 (16%), Positives = 235/691 (34%), Gaps = 134/691 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ + Y+ + VS +N + ++A+ L Sbjct: 27 GAGSGKTRTVTYRIAHMVREKGVSPLNILALTFTNKAAKEMKERAEALVGNDIHNLQIST 86 Query: 66 FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111 F S L QK++I++ + + + K + K++ Sbjct: 87 FHSFSVRLLRIYGEKLGYGKNFNIYDTDDQKSLISKIMKELNVQDDSTPGKIANRISKLK 146 Query: 112 DRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ K + + + + Y++ + + +DF DLI+N N LL + Sbjct: 147 EKGIDIKTIEREVDLRVPSNRVFFDIYDKYDKTLRSSNAMDFSDLILNANKLLDNSE--- 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + ++ + +I++DE QDT+ +Q+E+I + + + VGDE QSIY Sbjct: 204 -VLERVQERYRYIIVDEYQDTNDLQYEIINKIASKY----------NNICVVGDEDQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA +L +R + +I+L ++RST IL +++ ++++G Sbjct: 253 AFRGANINNILNFERDYKNAL--------VIKLEKNYRSTERILNAANELIRNNKSSRGK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW ++ + ++ + A Sbjct: 305 K---------------------LW-------TDAGKGEKIQVFNAANTFDE-------AN 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 IA I + + KD+ VL R + ++ I Sbjct: 330 FIAEEIVR----------KNREGVPFKDMAVLYRTNAQSRVLEEKM----LLNNIKYRVY 375 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 +KDL+A I + +D+L+FV ++ P + + + K + ++ Sbjct: 376 GGMQFFQRREVKDLLAYLSVINNIQDNLNFVRIINVPKRSIGDKSVAKFAEIAAQKGISL 435 Query: 467 YEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E ++ K + + + +++ + + + F IL K Sbjct: 436 FESLKYIDEVSGLRAAAKEKLKDFYRLLTDVLENLEHMTVSEIFQEILNRTKYIDSI-ED 494 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + + ++E +N E+ +L E + + T N V++MT+H+ Sbjct: 495 NKEDRVKNIEELMNSIREIEREYPGITLSEYLEFISLTSATDSMDDEE--NFVKLMTIHS 552 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 +KGLE VF+ +F + L Sbjct: 553 SKGLEFDFVFIAGMEEGLFPGE----------------------------------ASIL 578 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL YV +TRA +L + S Sbjct: 579 NDEDLEEERRLCYVAITRAKKELRLSHASER 609 >gi|289565872|ref|ZP_06446313.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF] gi|289162332|gb|EFD10191.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF] Length = 744 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 120/760 (15%), Positives = 242/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 91 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687 >gi|86133361|ref|ZP_01051943.1| UvrD/REP helicase [Polaribacter sp. MED152] gi|85820224|gb|EAQ41371.1| UvrD/REP helicase [Polaribacter sp. MED152] Length = 774 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 103/643 (16%), Positives = 210/643 (32%), Gaps = 121/643 (18%) Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAH 136 T K + + K + ++ ++ I +R FN + ++ + + + Sbjct: 122 GTIIKEMNLDKERYKPKQILGRISSFKNSLITVRAYFNNSDLQEADMHASRPKVGDIYRE 181 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y + K+ +DF+DL++ TN+LL + + K +I++DE QDT+ Q+ ++ Sbjct: 182 YVDRCFKSGAMDFDDLLLRTNELLARFPD---VLAKYQDRFRYIMVDEYQDTNHSQYIIV 238 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 R+L + F + + VGD+ QSIYSF GA + +L ++ Sbjct: 239 RALADRF----------QNICVVGDDSQSIYSFRGANIQNILNFQKDYP--------DVK 280 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 +L ++RST +I+ + V + + ++W Sbjct: 281 TFKLEQNYRSTKNIVNAANSVIARNKTKLDK---------------------EVW----- 314 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 + + D R +A +I + N + + Sbjct: 315 -TSNDAGDSINVMRTISDGEEG--------RFVAQSI---------WENMMNHQLTPDNF 356 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 VL R + I R I IKD+++ R +++ D+ + Sbjct: 357 CVLYRTNSQSRAIEDALR----KKNIDYTIYGGISFYQRKEIKDILSYLRILINPNDEEA 412 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG-------ISKFQHVIKYI 488 ++ P I ++ + ++++E I+ K Q+ + I Sbjct: 413 LKRIINYPARGIGATTIDRLTIAANHYKKSIFEIIKYIDKIDIKINSGTKKKLQNFMNMI 472 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN-----E 540 L AQ + + +++ + + E ++ + E LN E Sbjct: 473 LRLQIEAQTKNAFEIAEVVVKETRLIKDLEKDGTPEAVSKVENVQELLNGIKDFITDKIE 532 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + +SL + ++ + + V +MT+H +KGLE V++V +F Sbjct: 533 EGEDASLTTFLEDVALATDFDSK-KDNDKPSVSLMTIHQSKGLEYLYVYIVGLEENLFPS 591 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + +S EE RL YV +TRA Sbjct: 592 ----------------------------------AMSMNTRSELEEERRLFYVALTRAEK 617 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 + K + + K+ Sbjct: 618 VAYLSYAQTRYRWGKLVDAEPSRFLEEIDDQYLHYIAPKMPEP 660 >gi|261207461|ref|ZP_05922147.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6] gi|260078352|gb|EEW66057.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6] Length = 747 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 120/760 (15%), Positives = 242/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 34 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 94 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 385 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 445 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 690 >gi|219683935|ref|YP_002470318.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis AD011] gi|219621585|gb|ACL29742.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis AD011] Length = 907 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 105/653 (16%), Positives = 209/653 (32%), Gaps = 117/653 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKSTLASLTLAKYLNAHYE 138 K + I + D K +L + + F + F + + A Y+ Sbjct: 144 KRFTPRSILARISDYKNQLTDASTALAQYAPDFKPGMRHYSFGQIGDPEPVYAVVYAEYQ 203 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 +DF+DLI+ T +LL+ + + + +IL+DE QDT+ Q+ ++R Sbjct: 204 YRLALANAVDFDDLIVRTVELLRTQPH---VAEYYRHKFRYILVDEYQDTNHAQYVLVRE 260 Query: 199 LTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 L D + S P + VGD QSIY+F GA+ + + ++ Sbjct: 261 LAGVDAHEPSDPMATEAGKSGPAWVTVVGDSDQSIYAFRGADIRNIQDFEKDFP------ 314 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL + V + + LW Sbjct: 315 --DARTIMLEQNYRSTQTILDAANAVIAHNSARKPKK---------------------LW 351 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + + +A + A IA I ++ + + Sbjct: 352 TAL------GEGDKIIGYAA--------DTAQLEAHWIAQQILHLHEE---------KGL 388 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ ++ R + + I + +KD +A + I++ Sbjct: 389 PYSDMAIMYRANAQSRSLEEGL----IQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNP 444 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN------CGISKFQHV 484 DD++ +L P ++ +T + I++ + + + Sbjct: 445 ADDINMRRILNVPKRGLGTRAESQLTLFANEHNQTFWWAIEQLEDIEGMSARTANAVRAF 504 Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + L A P + +L + + ++ L + + Sbjct: 505 RELMTSLRTFAGEHDSKPSEIVAQVLEQSHMLELLRKSEDPQDESRVENLSQLQSVAAEF 564 Query: 540 EQNSYS-SLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 EQN+ +L + + + + +V +MT+HTAKGLE P+VFL Sbjct: 565 EQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTLHTAKGLEYPIVFLTGMEQGT 624 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H E RL YVG+TR Sbjct: 625 FPHS----------------------------------RAMENMDELSEERRLAYVGITR 650 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 A +L + + + + + ++ + + + K+ + + W Sbjct: 651 AKRRLYLTRAAVRAQWGRQSEMMPSQFLDEIPDSLIDWKRREAGMERMRSGWR 703 >gi|134300187|ref|YP_001113683.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1] gi|134052887|gb|ABO50858.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1] Length = 730 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 104/601 (17%), Positives = 196/601 (32%), Gaps = 120/601 (19%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 + +++ T + +A + Y+E KN +DF+DLI+ T Sbjct: 136 RAMLSAISGAKNKLQTPAQYDRQAFEYFEQVAARVYRLYQEKLFKNNAVDFDDLIMLTVR 195 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 L K+ + + +IL+DE QDT+ Q+ ++ L E S R + Sbjct: 196 LFKENPD---VLAYYQNKFKYILVDEYQDTNHTQYVLVNMLAE----------SHRNVCV 242 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD QSIY + GA+ +L +R + +++L ++RST +IL + V Sbjct: 243 VGDPNQSIYKWRGADINNILDFERDYP--------EAKVVKLEQNYRSTGNILQAANAVI 294 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 A+ + + G+ + ++ Sbjct: 295 KNNAEAKDM---------KLWTSKGEGNRIHIYRA------------------------- 320 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 + + IA + ++ + +D+++L R + + + Sbjct: 321 -ENERFESMYIADRVKDL---------RFSHNRKYRDMVILYRTHAQSRVFEEVF----L 366 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 I D IKDL++ R I + D S + ++ P I K+ Sbjct: 367 RQGIPYSIFGGQKFYDRKEIKDLLSYLRVIANPVDSQSLLRIINVPKRGVGAASIEKLTN 426 Query: 459 QRHETE-------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 E + + + I + + + + L +F S + +L Sbjct: 427 FATERDLTVLMALALVDDIPGVPAKARKQCRELADNLASLKKQVEFLSVTEITEEVLNRT 486 Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ---NSYSSLQELISELEQYPPTIKRAH 565 + + E + L EFL T ++ L + +S + + Sbjct: 487 GYKAELELENTVEARTRLENLQEFLTVTKEYDKQQGEETGGLADFLSTISLVTDLDRHDP 546 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 A +++ +MT+H+AKGLE PVVFL VF H Sbjct: 547 QA--DQITLMTLHSAKGLEYPVVFLTGMEEGVFPHSRALYDEEELEEERRL--------- 595 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 YVG+TRA ++L I + ++N + Sbjct: 596 -------------------------AYVGITRAEEELYITHCWERTLFGRTNMNAKSRFL 630 Query: 686 Y 686 Sbjct: 631 E 631 >gi|317407330|gb|EFV87300.1| DNA helicase II [Achromobacter xylosoxidans C54] Length = 762 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 114/673 (16%), Positives = 214/673 (31%), Gaps = 143/673 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L +T + K ++ + Q ++ Sbjct: 93 LRAHHRDAGLPQTFQILD---VTDQLAAIKRLMKANGVDDEKYPP---RDVQRFINGAKE 146 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ A + YE ++ V+DF +L++ +LL + A +R Sbjct: 147 EGLRPADVEAYDAHRRRLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 203 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+ +Q++ +R L +FAVGD+ QSIY+F GA Sbjct: 204 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGAAIFAVGDDDQSIYAFRGA 253 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R ++I L ++RS IL + + G + Sbjct: 254 NVGNMSDFERDYAH--------GTVIRLEQNYRSYGHILDSANALIGHNSGRLGKN---- 301 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW Q + + ++ S + A+ I Sbjct: 302 -----------------LW-------TDQGEGEPV-------RVIEQPSDGMEAQWIVDE 330 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++I ++ ++I VL R + +I I Sbjct: 331 IRSLIHEGSL----------RREIAVLYRSNAQSRVIEHAI----FSAGIPYKVYGGLRF 376 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + IK +A R + + DD S++ ++ P + ++ R ++Y + Sbjct: 377 FERQEIKHALAYLRLMANPHDDTSWMRVVNFPTRGIGARTLEQLADAARAHDSSLYAAVA 436 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 A G S + IH + + + +L A + + R G E ++ L+ Sbjct: 437 LVAGKGGSNLAQFAQLIHRMTEETRDLPLPEMVEHMLEASGLNAHYKAEREGAERLENLN 496 Query: 531 EFLNFTLRNEQNS------------------------------YSSLQELISELEQYPPT 560 E + L L + L Sbjct: 497 ELITAAAVFASEENYDGMPAGVVPEQATSSTLMPGVVDAAPVASDGLTPLAAFLSHAALE 556 Query: 561 I-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + V++MTVH AKGLE VF+ +F H++ Sbjct: 557 AGDNQAQQGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENS---------------- 600 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 L++S EE RL+YV +TRA +L I + ++ Sbjct: 601 ------------------ILEQSGLEEERRLMYVAITRARQRLYISLAQSRMLHGQTRYA 642 Query: 680 TWYDMVYDSFHND 692 + + Sbjct: 643 MRSRFLDEIPEQH 655 >gi|23098637|ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis HTE831] gi|81746699|sp|Q8ERW5|ADDA_OCEIH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|22776864|dbj|BAC13138.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis HTE831] Length = 1243 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 117/686 (17%), Positives = 247/686 (36%), Gaps = 39/686 (5%) Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134 +K +++ +K+++ ++ + + L K Sbjct: 289 KVDCDEEKKTKVKKLRDSYKKRFQKMQEVWFARNLDAHVYDMRVLAPVIKHLVELVKQFQ 348 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLL------KKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + KK+ V+DF DL +L ++ + + + ++ ++ +L+DE QDT Sbjct: 349 DSFAKVKKEKAVVDFSDLEHYCLQILIDESSTEEEVIPSTVAMQLQRQFTEVLVDEYQDT 408 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 +++Q +++ +++ +F VGD KQSIY F AEP + + + Sbjct: 409 NMVQETILQLISD--------RQGSGNMFMVGDVKQSIYRFRHAEPSLFIDKYKRFS--- 457 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVG 306 N+ I+L +FRS ++L + +F E+ +S D + + + Sbjct: 458 -NSDDPSIRIDLARNFRSRENVLLGANYIFRQLFDEDLGEISYDDAAELIYGNKMYDDHP 516 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI----SNMIGTDTI 362 E ++ ++S+ Q ++ + D + A A++I I + Sbjct: 517 LEAKPELLLIDNNSEDVEQSDNEETVEDLEKAQIEARAYAKQIKNWIGTPEDEIPMQVVD 576 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + GK+R +Q KDI++L+R I + I + + + IK ++ Sbjct: 577 KATGKQRDLQYKDIVILMRSMTWASTIADELQ----QQGIPTYADLSTGYFEAIEIKVML 632 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---- 478 + + I + D+ +L+SP+ ED + I + + N Sbjct: 633 SFLKVIDNPRQDIPLASILRSPIIGLEEDQLASIRLADRKASFYEAVQRYLQNEQDNSDT 692 Query: 479 -SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFT 536 ++ +++ A+ S + I + G + L + Sbjct: 693 VKSLIRFMEMLNDFRQSARQGSLSELIWDIYRETGYYDFVGAIPGGKQRQANLRALYDRA 752 Query: 537 LRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 E S+ L + +E+ RA S + VRIMT+H +KGLE P+V L Sbjct: 753 RGYESTSFRGLYRFLRFIERMEERGKDLGAARALSEQEDVVRIMTIHKSKGLEFPIVILG 812 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 + +K + L + + + + + + E R+L Sbjct: 813 GMNKEFNQRDLSEKYLLHKDLGFASKYIDPVKRIQYPTLYYHAVRQAKFRDMLSEEIRVL 872 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV +TRA ++L++ + +K + D R++ + + Sbjct: 873 YVALTRAKEKLLMVGTVPSIEKKLEKWQRIVDHPSWVLPAYFRMESKTYLDWVGPALLRH 932 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQ 737 EN + E+I Q + Sbjct: 933 VGSEKIRTENIGNQVLESINQDPSDW 958 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 98/275 (35%), Gaps = 21/275 (7%) Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 + DM S ND+ +K+ + E + + ++ + Sbjct: 968 YMDMKDSSMDNDDNLKEKVFNWESVETEQEGLKNDVDARLSYEYAYKQATVFRAKQSVTE 1027 Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---LP 797 K +K+D ++ IL PS + N +G +H ++Q + L Sbjct: 1028 LKRQQEVKDDYSDQQILPPSHGPIGKRPNFLQKKLKLSPAEKGTALHTVMQHLPMTHVLS 1087 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKI 855 E + + I + E ++ + ++ R + + +S + + EV S + Sbjct: 1088 EPEIEENIEKMVLEE--KLTRMEADSINIRAVERFFHTEIASKIISGNDMHREVPFSIML 1145 Query: 856 NCPK----------KDIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPYTHI 901 + + ++I G ID + + I +YKT Q+ + + + + Sbjct: 1146 PASEVYANWKDQSNEKVLIQGVIDCLLQADTGWIILDYKTDFIEDNPTSQKEQELIHRYQ 1205 Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 Q+++Y + ++ + L + S+ + +P Sbjct: 1206 TQMTLYRRAIEQIWKQPVEQTYLYFFSQQLLIEVP 1240 >gi|148266336|ref|YP_001233042.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] gi|146399836|gb|ABQ28469.1| ATP-dependent DNA helicase PcrA [Geobacter uraniireducens Rf4] Length = 744 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 109/777 (14%), Positives = 234/777 (30%), Gaps = 133/777 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ ++++ + + V + ++ + L + Sbjct: 27 GAGSGKTRVIVHRIAYLIKERSVPPWQILAVTFTNKAAGEMRERVEKLLG-GGELPLIST 85 Query: 66 FSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F + L ++ ++ K ++ +L K + Sbjct: 86 FHSACARILRREIHHLGYDANFAIYDDKDAEKLLKEIVAELNLDEKRYPVKSFIAAIDEC 145 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 ++ T + + A Y+E +K LDF DL++ T L ++ + Sbjct: 146 KNAGKTPEDVPVGDFMAEKVAQVYAAYQERLRKCNALDFGDLVLLTVRLFEQFPE---VL 202 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + + I +DE QDT+ +Q+ +++ L + L VGD+ QSIY + Sbjct: 203 VRYQERYRWIQVDEYQDTNPVQYRLVKLLAG----------KRQNLCVVGDDDQSIYRWR 252 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+ + +L + +++L ++RST +IL V + +G + Sbjct: 253 GADIRNILDFEEDFP--------GVKVVKLEQNYRSTQNILAAAGAVVAKNRGRKGKT-- 302 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 LW ++ + D + AR + Sbjct: 303 -------------------LW-------TENPPGERIVYRRLADEREE-------ARYVC 329 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + + + V R + ++ I Sbjct: 330 RQIEQHVRKGGDLAG----------VAVFYRANAQSRVVEDAMVAD----GIPYHMVGGM 375 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469 IKD++A + +++ D+++ ++ +P + KI + Y+ Sbjct: 376 RFYARQEIKDILAYLKVLINPADEIALKRIINTPARGIGHATVDKISELAQRRGILFYDA 435 Query: 470 IQKFANC------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 +++ A K + + + + S D + ++ + Sbjct: 436 LREAAESGLLGSGPRGKIAGFVALLEGFESMVETSSLKDLASRVILETGYAVKLQEERSE 495 Query: 524 EVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E D L E L+ E+ ++ +L + ++ +MT+H Sbjct: 496 EAQDRLANLQELLSALEEFERVSAERTLAAFLEQVALISDLE--QEGKGRESATLMTLHA 553 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF++ ++F H Sbjct: 554 AKGLEFPLVFMIGMEERLFPH----------------------------------ARSLE 579 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 EE RL YVGMTRA ++L + + + D H ++ Sbjct: 580 DPEQMEEERRLCYVGMTRAQERLYLTNARRRRIFGQEQYNPPCRFLADIPHALLDMEDEG 639 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 + D+ E E + ++ E + ++ E Y Sbjct: 640 YQSGFGFDKGRGEEPGARAEEKPARHNLAAVFEMELEPEFADEVRVVPDEAEGEIYP 696 >gi|270291088|ref|ZP_06197311.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4] gi|270280484|gb|EFA26319.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4] Length = 757 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 117/700 (16%), Positives = 214/700 (30%), Gaps = 145/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L ++ Sbjct: 30 GAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTNKAAREMRERVANLLGEVASEIWVST 89 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + + + +++ +K L + R K+ + Sbjct: 90 FHALCVRILRRDIEQIGYNRAFSIADPSEQRTLIKHVLADLNYDPKVYDPRSVLGKISNA 149 Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + + Y+ K N LDF+DLI+ T L ++ + Sbjct: 150 KNDLMTPADYQENASNPHDEAVGKIYDEYQRRLKANQALDFDDLIMQTIRLFEQSPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q++++ L + F R L VGD QSIY Sbjct: 208 -LQFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKGF----------RNLCVVGDSDQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + L ++RST +IL + V + + Sbjct: 257 WRGADMQNILNFESDYP--------DAHTVMLEQNYRSTQNILNAANDVIANNVERKPK- 307 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 QLW + S+ + Sbjct: 308 --------------------QLW-------TDNDEGAKISYYRGQTGNDEVH-------F 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I I D +L R + L+ I Sbjct: 334 IVQQIRKQIEE---------NNFDYGDFAILYRTNAQSRLVEDTF----VKANIPYTMVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D I+D+++ I ++ED +SF ++ P + K+ + ++ Sbjct: 381 GHKFYDRKEIRDVLSYLTLIANEEDSMSFERVINEPKRGIGATSMAKLQAFADENSWSLL 440 Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + A + + K I L A+F S + +L R Sbjct: 441 QAARNVQIANGIARRTRNAIEDFAKTIDALRKSAEFLSITELTETLLDKTGYRAALEQTR 500 Query: 522 GNEVI---DVLDEFLNFTLRNEQNSYSS-------------LQELISELEQYPPTIKRAH 565 E + ++EFL T + ++ + + L + +++L Sbjct: 501 TMEAEARLENINEFLTVTKQFDEQNDAEGTEVADENGDNVRLVDFLADLALVSDQD--DV 558 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + V +MT+H AKGLE PVVFLV VF Sbjct: 559 EEEPSAVTLMTLHAAKGLEFPVVFLVGMEEGVFPLS------------------------ 594 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA +L + Sbjct: 595 ----------RAATDPDELEEERRLAYVGITRAQKKLYLT 624 >gi|256545197|ref|ZP_05472563.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170] gi|256399238|gb|EEU12849.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170] Length = 729 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 94/547 (17%), Positives = 188/547 (34%), Gaps = 118/547 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + +YE+ K + LDF+DLI+ T +L + + + ++ +DE QDT+ Q Sbjct: 170 IYKNYEKKKFEYNSLDFDDLILKTLELFAED---SNTLKYYQDKFEYLFVDEYQDTNKSQ 226 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +E+I+ + + VGD QSIYSF GA+ +L ++ Sbjct: 227 YELIKFI----------GKGHNNVRVVGDADQSIYSFRGADINNILDFEKDF-------- 268 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I+L ++RST++I+ V +K+ + + LW Sbjct: 269 KDAKTIKLEENYRSTSNIINVANKLIKNNSERKEKN---------------------LW- 306 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S+ + + + + + + I++++ + Sbjct: 307 ------TSKNDGSEVLYKKSSVESEEG-------KFVIDEINSLLNDG----------YR 343 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KD+ +L R + + D D IKDL++ + +++ + Sbjct: 344 LKDMAILYRMNAQSRIFEEYLMKNLLD----YKVVGGLKFYDRKEIKDLISYLKILVNPK 399 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVI 485 DD+S ++ P + + K+ + + E + S + Sbjct: 400 DDISLKRIINEPKKGIGDKTVEKLEKEANKLGFSLTELVCDPSLFSNLPSKLKSSCEKFY 459 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 + E+ + + IL + + E ID L+EF++ + N Sbjct: 460 NPLAEIFDNYKDYDIVELIEEILDKSGYIRALEESYSVENRSRIDNLNEFISSAAEYQSN 519 Query: 543 SYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + + LE + + + + +MT+H+AKGLE V F+V +F K Sbjct: 520 NPED--NIHDYLENLSLLSDLDKTEDKDDSISLMTIHSAKGLEFKVCFVVGMDEGLFPSK 577 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE R+ YV +TRA ++ Sbjct: 578 RSID-----------------------------------EGNIEEERRICYVAITRAMEK 602 Query: 662 LIICKHS 668 L + Sbjct: 603 LYLSSAE 609 >gi|219667567|ref|YP_002458002.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense DCB-2] gi|219537827|gb|ACL19566.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense DCB-2] Length = 755 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 115/627 (18%), Positives = 200/627 (31%), Gaps = 131/627 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A+ + Y + N LDF+D+I+ T L ++ + + + +IL+DE QDT+ Sbjct: 168 AERVYELYLKKLLANNALDFDDIIMLTVRLFRENPE---VLSQYQDKFRYILVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++ L + + R L VGD+ QSIY F GA+ + +L +R + Sbjct: 225 HAQYALVNLLAKKY----------RNLCVVGDDDQSIYMFRGADVQNILDFERDYPE--- 271 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++L ++RST IL + V + S Sbjct: 272 -----AKTLKLEQNYRSTKSILQAANSVVQNNTERKEKS--------------------- 305 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + Q + + + AR + I ++ Sbjct: 306 LW-------TENEDGQPIVYYVADNEHDE-------ARYMGERIQRLLN---------VE 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + + VL R + +I I + + IKD++A R + Sbjct: 343 GRKFNEFAVLYRTNAQSRVIEERF----MKEGIPYRIFSGLKFYERMEIKDILAYLRILH 398 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKFANCGISKFQ 482 + D +SF +L P E + KI +E E +YI + + Sbjct: 399 NPADQVSFSRVLNVPKRGLGESTLEKILDYANEQEMPVLDAIMEADYIPELQSRAKKPLL 458 Query: 483 HVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + EL + A S +L +S E + L EFL+ T Sbjct: 459 AFAHLMQELRALAAAESSVTKLVEEVLKRTGYWDNLVSDKSPEAEARLENLREFLSVTAE 518 Query: 539 NEQN-------------SYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLE 584 ++ + + L LEQ + + V +MT+H+AKGLE Sbjct: 519 YDEKADNYETAVVQEGIEDALVPGLTGFLEQVSLVAQIDSLDQADDAVVMMTIHSAKGLE 578 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVFL +F ++ Sbjct: 579 FPVVFLGGMEEGIFPSSRSMLDPVL----------------------------------L 604 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E RL YV +TRA ++L + + + ++ + D T Sbjct: 605 AEERRLCYVAITRARERLYLAYAQQRMLYGRTQYNRPSEFFQEIPTHVLVDRDPIDPPPT 664 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREE 728 + A +T +P E Sbjct: 665 RAQKAHSAAARPAATPSGGPSPWRTGE 691 >gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] Length = 802 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 104/665 (15%), Positives = 194/665 (29%), Gaps = 132/665 (19%) Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 + L + + + K + + + +LK +L I K Sbjct: 140 DADDSRRLLTMIVKEMGLDAKKFAPRALATQISNLKNEL---------IGPEDAAADAAK 190 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + + Y+ + DF+DLI T LL+ + + H+L Sbjct: 191 TGEPFAVTVAEVFGTYQARLRSANAFDFDDLIGETVGLLQSHP---NVAQYYRRRFRHVL 247 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT+ Q+ ++R L +P L VGD QSIY+F GA + + + Sbjct: 248 VDEYQDTNHAQYILVRELVGLEEDEDGV--TPSELCVVGDADQSIYAFRGATIRNIEEFE 305 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 R I L ++RST IL+ + V S + Sbjct: 306 RDFPN--------AETILLEQNYRSTQTILSAANAVISRNAGRREKK------------- 344 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW Q + + + + A + I + Sbjct: 345 --------LW-------TDQGDGALITGYVADNEHDE-------ASFVVSEIDALSDNG- 381 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 I+ D+ V R ++ + + + + ++DL Sbjct: 382 ---------IKYSDVAVFYRTNTAARVLEEVF----IRHGVPYKVVGGVRFYERKEVRDL 428 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--------- 472 +A R I + D +S ++ +P + + T + Sbjct: 429 VAYLRAIDNPNDTVSLQRIVNTPRRGIGDRAQACLTVHAENHGTNFGGAIADAVEGGVAM 488 Query: 473 FANCGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VID 527 + + EL IA D ++ R + + +D Sbjct: 489 LNPRSRNAIATFSGLMTELRRIADDDESDIGDLLDAVVEKTGYRAELEGSSDPQDGARLD 548 Query: 528 VLDEFLNFTLRNEQN------------SYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 ++E ++ SL + + + + V +M Sbjct: 549 NIEELISVAREFSAQDFTDVVADEGAPEPGSLAAFLERVSLVADADQVPDD-DAGVVTLM 607 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+HTAKGLE PVVF+ F H Sbjct: 608 TLHTAKGLEFPVVFVTGWEDGQFPHMRALG------------------------------ 637 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 ++ E RL YVG+TRA ++L + + S Q + + + Sbjct: 638 ----DENELAEERRLAYVGITRARERLYVSRAMIRSTWGDPMQNPESRFLAEIPQHLIDW 693 Query: 696 KKIKL 700 ++++ Sbjct: 694 RRLEP 698 >gi|317132106|ref|YP_004091420.1| UvrD/REP helicase [Ethanoligenens harbinense YUAN-3] gi|315470085|gb|ADU26689.1| UvrD/REP helicase [Ethanoligenens harbinense YUAN-3] Length = 782 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 110/737 (14%), Positives = 226/737 (30%), Gaps = 133/737 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDIN-KYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E + + L + + S I K ++ ++ Sbjct: 119 AAGEMKSRLEQMLG---EQALDIWACTFHSACSRILRREIDKLELGYSRSFTIYDTDDSL 175 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 +L + N + KE+ + K+ Sbjct: 176 RVLRECCRDVAGDDR-NFANKTALPAISRAKEQNMSPAAFEAAASGDYRLQKI------- 227 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y++A ++ LDF+D++ T L +K + + ++L+DE Q Sbjct: 228 ----ASVYYKYQQALRQANALDFDDMLRLTVMLFEKNPD---VLDHYARRFRYVLVDEYQ 280 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ +Q+++I L + L VGD+ QSIY F GA + +L ++ + Sbjct: 281 DTNPVQYQLISLLAG----------GHQNLCVVGDDDQSIYKFRGATIENILSFEKQFKH 330 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +I+L ++RST+ IL V + V + + Sbjct: 331 --------ARVIKLEQNYRSTSAILGVANAVIANNTGRKSKK------------------ 364 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + D + A IA TI + Sbjct: 365 ---LW-------TENPDGDPVKVRRFEDEATE-------ALFIANTILENVKDG------ 401 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++ D V+ R + I I D + I+DLMA Sbjct: 402 ----MKFADQAVIYRMNAQSGPIEKAF----VRMGIPYRIIGGHRFYDRMEIRDLMAYLC 453 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------TVYEYIQKFANCGISK 480 I + D+L F ++ +P + + + +T ++ ++ + ++ Sbjct: 454 VINNPGDNLHFTRIVNAPKRSIGSATMAAVQQIAEQTGQTLYEVFLHCQEYEYFSKKTAR 513 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRN 539 + + ++ + + PH+ ++ + L ++ Sbjct: 514 IESFMHFMEHMRELRTEILPHELIRTVMEESGYLASLGDDEEAKSRKENLSTLISNAADY 573 Query: 540 EQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+N +L+ + E A + V +MT+H AKGLE P VF+ VF Sbjct: 574 EKNADEPTLEGFLEEAALMTDIDNYDGQA--DTVVMMTIHAAKGLEFPAVFIAGMEEGVF 631 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + EE RL YVG+TRA Sbjct: 632 PGQSVMIYP----------------------------------EQLEEERRLAYVGITRA 657 Query: 659 SDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 +L + + ++ + D + ++ + + ++ + A Sbjct: 658 KRKLNLTCAGSRMLFGATVRNRPSRFLDEIPNNLKDAQDMRPHFERPQPRRAAPAAPIRL 717 Query: 716 THHPENTPLEREETIKQ 732 + P++ + Sbjct: 718 ERPGVSRPVQSKAVFAP 734 >gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC 7942] gi|23957809|gb|AAN40822.1| unknown [Synechococcus elongatus PCC 7942] gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 1061 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 155/943 (16%), Positives = 304/943 (32%), Gaps = 111/943 (11%) Query: 2 KNRFGLSLNESYELIYKDL-WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + + + + I + W +S + + ++ IL + TL Sbjct: 177 REVLAQAQRDRLQQIQQSSDWQAAIEDLSGASWREADALSDQIQQILAWSDTLFD-PANS 235 Query: 61 CIEERFSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 + + LTQ + + + + + L+++L+ + + +R Sbjct: 236 NWQATYDEFIKLKLTQAGSAKNWGSADTAKLLRTQCKVLRDRLRDE-ESLLSLRPNEADD 294 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 + + + K+++ LDF DL L+ S +R Q Sbjct: 295 WNRDQRSRIYEAFETVLKSIDARKRQDRCLDFNDLERGAVRALE----SEAVRSHYQQRW 350 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +DE QDT+ Q +++++L L VGDEKQSIY F GA + Sbjct: 351 RYCFVDEFQDTNPTQSQILQAL---------WDPQHLILTLVGDEKQSIYGFRGAATQVF 401 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 + + I+ L SFR+ +L +++VF + + Sbjct: 402 RNW------QQQIQQHQGHIVTLSQSFRTHQTLLETINQVFEPVLD------------PY 443 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + R + L + + E + A IA I I Sbjct: 444 QPLRSDRQPPHPLPPIQQLVIEPEEKDSLE------------QARIQEATAIAQQIQTWI 491 Query: 358 GTDTIFSNG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + + R I DI +L R+R + + + N I V+ N L + Sbjct: 492 QQPLLVWDKPSNQHRPIAYGDIAILCRRR---APLETVYGEVLNQAGIPVLVNGGGSLLE 548 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 DL AL F++ +DL+ +L+SP F S+ ++ + + + + + Q+ Sbjct: 549 TPVGYDLQALLEFLVYPSNDLALATLLRSPAFGLSDAQLY---QRAQQGKGWWSHRQERP 605 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFL 533 F IK + L+ SP A S + + L Sbjct: 606 ---DPAFAAAIKILEGLLRSRFLESPLRLVQQFDRATGYSAVLASLPQAQRLLADWQALL 662 Query: 534 NFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 F + + L +L+Q + R N V +MT+H +KGLE PVV + D Sbjct: 663 TFLREQPQAHDLELLLRYWKQLQQAEVVLPRPVLEAGNAVTLMTLHGSKGLEWPVVIIPD 722 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 ++ S + + G+ + P K + +++ E RLLY Sbjct: 723 LTAKPRSQAETVLF------DTELGVALRQPYVKEQAAAYQFFKYRKQQAEDAETRRLLY 776 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 VG TRA D L++ K + R+ D++ ++ + + Sbjct: 777 VGFTRARDLLLLTSP------KSAEARSPLDLLAPGLEQ-AAIQPLDPNSGTEIAVTATL 829 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + P G + E Sbjct: 830 PTADAPLFWQSTAAIAPQYSELSVSAFADYFRCPALFHFRYTQ-------GHPGAIDGEG 882 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 + ++ GL++H+ L++ PE L + Sbjct: 883 AGTSDRPLQLGLLVHRALELDLRQPEA---------LKPYCAAEDQDLIPQALQLASCFA 933 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 P+ + EV++ +++ +++ GR D + ++ ++KT Sbjct: 934 TEPVYSAVREQAQQREVTLHLELSS---GLVLKGRADLVGAD----WVLDFKTDQQP--- 983 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 P + QL Y L N+ + ++ ++ I Sbjct: 984 ---QPENYQLQLWAYAAAL-----NRP-QAAIAWLRHNQLDWI 1017 >gi|322690920|ref|YP_004220490.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. longum JCM 1217] gi|320455776|dbj|BAJ66398.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. longum JCM 1217] Length = 900 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 116/727 (15%), Positives = 219/727 (30%), Gaps = 123/727 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L+ + Sbjct: 75 AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123 L T+ K + I DLK L ++ F F + Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + + A YE +DF+DLI T +LL+ + +IL+D Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L S P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ L ++RST IL + V S E + Sbjct: 306 IQDFEQDFPN--------AKTTMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + + A A+ +A I+ + Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 I D+ ++ R + + + + Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471 IKD +A + +++ +DD++ +L P + + R + + + Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489 Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + + + + L A P + +L R + + Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 ++ L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL F H + Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 +E RL YVG+TRA +L + + + S ++ + + + K+ + Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695 Query: 704 INKDEWI 710 + W Sbjct: 696 RMRASWE 702 >gi|293377660|ref|ZP_06623849.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1] gi|292643660|gb|EFF61781.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1] Length = 744 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 119/760 (15%), Positives = 241/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 91 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S + A Y++ + N +DF+DLI+NT L ++ S Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIVAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 442 EAAQNVELANIGGKAGQQLGSFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVSSKSAT 687 >gi|160933076|ref|ZP_02080465.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753] gi|156868150|gb|EDO61522.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753] Length = 740 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 117/731 (16%), Positives = 226/731 (30%), Gaps = 144/731 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + L + + + + + Sbjct: 67 AAGELKERLTAMLGDTGGDVWAATFHSTCARILRRDGDR-----------IGYSSHFTVY 115 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 S L + NI + I + ++ ++D + D Sbjct: 116 DTDDSKRLVKDCQKALNIDDKMI--SHKSILSEISHAKDSMLSPADYQAAAGSDFRLAKI 173 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y++ ++ +DF+DL+ NT +L ++ + +I++DE Q Sbjct: 174 ----GAVYELYQKRLREADAMDFDDLLGNTVELFRQ---CPDVLEYYQNRFRYIMVDEYQ 226 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ +Q+E +R L E + L VGD+ QSIY F GA + ++ ++ Sbjct: 227 DTNQVQYEFVRLLAE----------KSKNLCVVGDDDQSIYKFRGATIENIMSFEKSYPN 276 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +I L ++RST +IL + V S E +G + Sbjct: 277 --------AKVIRLEQNYRSTKNILNAANAVISNNEERKGKT------------------ 310 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + Q + S+ A +A TI + Sbjct: 311 ---LWTENPEGDKIQ--------------IHTSSNEQDEAGFVATTILEQVAKGR----- 348 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D VL R + ++ + I + I+D++A Sbjct: 349 -----KYSDFAVLYRMNSQSNILEKVF----VKSGIPYRIIGGHRFYERREIRDMIAYLS 399 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFA-----NCGISK 480 I + D++ ++ P + + I E++ E + + K Sbjct: 400 VINNPSDEIRLRRIVNQPKRSIGDKTIATASEIAGALGESLLEVLGRADEFDSLRRASVK 459 Query: 481 FQHVIKYIHELIHIAQFCSP--HDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFT 536 + + ELI S H+ + LIL + I+ ++E + Sbjct: 460 LKAFYDMMQELIDANDDESVSLHELYELILEKTGYIEALRGEKEEAETRIENINELASNL 519 Query: 537 LRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L+ E ++L + E+ + V +MT+H+AKGLE PVVFL Sbjct: 520 LKFQEENGEEATLSAFLEEVSLMTDIDNYD--ETADTVVMMTMHSAKGLEFPVVFLPGFE 577 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F L + +E RL YV Sbjct: 578 EGIFPG----------------------------------LQAIYDPNEIQEERRLCYVA 603 Query: 655 MTRASDQLI--------ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 +TRA + L + ++ + + + D++ + D R + + + Sbjct: 604 ITRAKESLYLLNADSRMLFGSTSRNRPSRFSLEIPLDLINKTREQDWRKPDLGTKMPVAE 663 Query: 707 DEWIAYEWSTH 717 E + Sbjct: 664 TELRRKSATAA 674 >gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125] gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125] Length = 1129 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 138/824 (16%), Positives = 283/824 (34%), Gaps = 82/824 (9%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + A + L +Y A Y+E K+ DF DL N LL + D ++ + H+ Sbjct: 323 EVLTAFIDLLQYFAARYKERKQLLSAFDFSDLQRNAVCLLDQED----VQKSCHDQFKHM 378 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ +Q +V+ + +P F VGD KQSIY F GA+ + Sbjct: 379 MVDEFQDTNQMQMDVLTKI------------NPSYQFLVGDGKQSIYRFRGADVTLMNEM 426 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ IE+ ++R+TA ++ V+ +F+ + Sbjct: 427 SEQ-----ARDEKEAQFIEMNTNYRTTAPVIHAVNGLFAHAMKDVSVHS----------- 470 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 V + ++ + + + S + ++ + + IA + M+ T Sbjct: 471 -------VPYASLIPAREPEKEDDIRVSLHITKTTEKEKDNDQVPYHHIADRLLEMVRTG 523 Query: 361 --TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T+++ R D+ +L+ R + + +D I + I Sbjct: 524 EPTVWNGESWRSPNWGDMAILIPVRTELLALERAL----SDKGIPYHVYGGVGFYERQEI 579 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-- 476 D + L R++ ++L +L+SP+F + DD+ + + + T ++ + Sbjct: 580 LDFVTLLRWLDRPFEELYLFALLRSPMFGLTLDDLMFVKERFSDELTWFDIVVDKEMASL 639 Query: 477 ------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529 F + ++ + S D + + + G + + + Sbjct: 640 FAERPVVTDAFVRLRTWLDRWVPFRPVPSLIDHLYELFDQTGLKMSLFVQENGMQKVRNV 699 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPV 587 ++ ++ + N L + ++ A N V IMTVH +KGLE P+ Sbjct: 700 EKLIDVMSGWKTNVLEELLQRFDLIQAEVEKEGEAEVEQVAGNVVHIMTVHASKGLEFPI 759 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V L K + + K + + + +T E Sbjct: 760 VCLPQLDRVPQRDKGQVRYDREMGIVLRHEWEEDDGVVKLETPAFALVKEQADLATMAEN 819 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV TRA D L + Q + +Y+ E + +++ I +D Sbjct: 820 KRLFYVAATRARDYLWMTGKE---------QPSTSSWLYEVEEALEEMPELRSHLKIEED 870 Query: 708 EWIAYEWSTHHP--ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 W + P+ + + ++ + P+ + S Sbjct: 871 VASHDRWEKDIQTYKVPPIVPRQPELVPLSVTEMMTFIQDPVAYYERYILGIETSVQHEA 930 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 +S + ++ G + HK+ +++ I A W E K+ Sbjct: 931 KTKQEDSNIDPSK---VGSLAHKVFELVDQG--VTLAGSIEMTLA--AHDWTQDERKHYE 983 Query: 826 LSITRLLE--NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883 I RL N +E + S + I G ID+I ++ I ++ Sbjct: 984 EHIQRLFRGVNQHSLQWFGEPVANEWAFSFSF----EGAEIVGEIDKIVKNENEYHIIDF 1039 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 KT+ + + + QL++Y + + + + ++V Sbjct: 1040 KTNQIR-RSGAELLRFYEPQLALYAEAYEQLC-HVPVKSASLFV 1081 >gi|58584885|ref|YP_198458.1| superfamily I DNA/RNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419201|gb|AAW71216.1| Superfamily I DNA and RNA helicase, UvrD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 638 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 106/557 (19%), Positives = 185/557 (33%), Gaps = 121/557 (21%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 +A + Y+E K +DF DL++ L + I + +I++D Sbjct: 162 RPIYIIALKVYHQYQERLKFLNSVDFGDLLLYNIQLFNQ---KTEILSYYQGKFKYIMVD 218 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT++IQ+ ++ L ++ + VGD+ QSIYS+ GAE K +L+ Sbjct: 219 EYQDTNVIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVKNILKFSDD 268 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + II+L ++RST+ IL V + + Sbjct: 269 FKN--------AKIIKLECNYRSTSHILATASYVINHNKTRLEKK--------------- 305 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + ++ + +D + AR I+ I + Sbjct: 306 ------LW-------TTNIKGEKVNLIKLWDGKAE-------ARFISEQILKL------- 338 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + D+ VLVR T ++ Y I + ++D++A Sbjct: 339 -----NKYRFSDMAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDVIA 389 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANC 476 R + + DDL+F ++ P + + KI T + + +E + Sbjct: 390 YLRLVTNNNDDLAFERIVNRPKRSIGPTTLKKIYTVAQGNKTSFFEAAKILVNSNQVIEK 449 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534 I + H F I + + G I+ + E ++ Sbjct: 450 IKLSLNDFFNKIKAWEEMISVKPLHKFVKTIANQSGYIEMLENEEVTGLARIENVKELIS 509 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + LE ++ + N + V +MT+H AKGLE P VFL Sbjct: 510 SLKNFDNA--------TTFLEHISLVMEVDNMNNDDTVHVMTLHAAKGLEFPCVFLPGWE 561 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H+ + EE RL YVG Sbjct: 562 EGLFPHQRS--------------------------------FEDKSGKALEEERRLAYVG 589 Query: 655 MTRASDQLIICKHSNTS 671 +TRA ++LII Sbjct: 590 ITRAKEKLIISCADRRE 606 >gi|262381917|ref|ZP_06075055.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297094|gb|EEY85024.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 780 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 113/697 (16%), Positives = 207/697 (29%), Gaps = 131/697 (18%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150 +L Q ++ TY ++ + L + + Y+ + +DF+ Sbjct: 138 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQNRCLQAGAMDFD 197 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN L + + K ++L+DE QDT+ Q +++ L E Sbjct: 198 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 245 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIYSF GA +L+ K + I +L ++RST +I Sbjct: 246 -RHGHICVVGDDAQSIYSFRGANIDNILKFKNLY--------TGCRIFKLERNYRSTQNI 296 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + + + +T Sbjct: 297 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGSKVSVFT 329 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 SY D + +A I+ M G D +L R + ++ Sbjct: 330 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 373 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD+++ R I++ D+ + ++ P + Sbjct: 374 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRIINYPTRGIGD 429 Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ +++ EY N K I I + S + Sbjct: 430 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 489 Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553 TL++ E + L E L E ++ + ++E Sbjct: 490 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 549 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + N ++V +MTVH AKGLE VF+V +F K Sbjct: 550 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 602 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 EE RL YV +TRA ++ + Sbjct: 603 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 634 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K++ T + D D + + + A E H +P + ++ Sbjct: 635 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGHPAFASPFRQPRAVEDD 691 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + + S + L Sbjct: 692 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 728 >gi|217964093|ref|YP_002349771.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23] gi|217333363|gb|ACK39157.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23] Length = 731 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 241 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 283 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 359 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 415 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 416 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 475 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 535 Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 586 ------------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRM 621 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELGNE 648 >gi|293571853|ref|ZP_06682869.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980] gi|291608107|gb|EFF37413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980] Length = 744 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 119/760 (15%), Positives = 241/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 91 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S + A Y++ + N +DF+DLI+NT L ++ S Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIVAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 442 EAAQNVELANIGGKAGQQLGSFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVSSKSAT 687 >gi|227509969|ref|ZP_03940018.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190575|gb|EEI70642.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 743 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 116/753 (15%), Positives = 237/753 (31%), Gaps = 140/753 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + V N + ++ L S Sbjct: 30 GAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLDESGDDVWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKI 110 F L F + Q+ ++ + + + + D K+ + Sbjct: 90 FHALCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKKFDPRAVLSSISNA 149 Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K ++ + + A Y+ ++N LDF+DLI+ T +L + Sbjct: 150 KNDLLTPKAFKAQADNDFDQIVADVYARYQAELRQNESLDFDDLIMTTIELFDQFPD--- 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + ++I +DE QDT+ Q+ ++ +L + + + VGD QSIY Sbjct: 207 VLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAK----------KSKNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L K + L ++RST +L + V + N + Sbjct: 257 WRGANMQNILDFKEDYP--------DAHVTLLEQNYRSTKTVLDAANAVIAHNLNRADKN 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW ++ S+ + + + AR Sbjct: 309 ---------------------LW-------TENEQGEKISYY-------RGQTENDEARY 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I +G +L R + +I I Sbjct: 334 VVAKIQEEMGK---------PKRNYGSFAILYRTNAQSRVIEETL----LKANIPYTMVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I+D +A + + D +SF ++ P E + K+ ++ Sbjct: 381 GHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKRGIGETSLEKLRTFANDHGWSLL 440 Query: 468 EYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 E + + + I ++ + + IL S Sbjct: 441 EASKNIDLANEISSRAKNSISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKSSK 500 Query: 522 GNEVI---DVLDEFLNFTLRNEQNSY-----SSLQELISELEQYPPTIKRAHSANHNEVR 573 + + L+EF++ T + +Q++ +L +S+L +EV Sbjct: 501 SLQAQTRLENLEEFISVTQKYDQDNPDQGGQDNLVNFLSDLALVSDQD--DLDEKTSEVT 558 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVF++ +F Sbjct: 559 LMTMHAAKGLEFPVVFIMGMEEGLFPLS-------------------------------- 586 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690 +S +E RL YVG+TRA ++L + + + + + + + + Sbjct: 587 --RAAQDESELQEERRLAYVGITRAKEKLYLTNAYSRMLYGRRQNNPESRFVNEIKPELI 644 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 E V + + S D +T + + Sbjct: 645 QYENVNQQEKPLSTPFDRRTRRATATTYHQPAQ 677 >gi|227551669|ref|ZP_03981718.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330] gi|257895731|ref|ZP_05675384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12] gi|227179232|gb|EEI60204.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330] gi|257832296|gb|EEV58717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12] Length = 747 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 119/760 (15%), Positives = 241/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 34 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 94 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S + A Y++ + N +DF+DLI+NT L ++ S Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIVAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 385 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 445 EAAQNVELANIGGKAGQQLGSFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVSSKSAT 690 >gi|227512902|ref|ZP_03942951.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577] gi|227083902|gb|EEI19214.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577] Length = 743 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 109/694 (15%), Positives = 216/694 (31%), Gaps = 141/694 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + V N + ++ L S Sbjct: 30 GAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLDESGDDVWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQEINK-----KSPDLKEKLKKSQDE 106 F L F + Q+ ++ + + + K D + L + Sbjct: 90 FHALCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNA 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + ++ + + Y+ ++N LDF+DLI+ T +L + Sbjct: 150 KNDLLT--PKAFKAQADSDFDQIVADVYERYQAELRQNESLDFDDLIMTTIELFDQFPD- 206 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + ++I +DE QDT+ Q+ ++ +L + + + VGD QSI Sbjct: 207 --VLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAK----------KSKNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + +L K + L ++RST +L + V + N Sbjct: 255 YGWRGANMQNILDFKEDYP--------DAHVTLLEQNYRSTKTVLDAANAVIAHNLNRAD 306 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ S+ + + + A Sbjct: 307 KN---------------------LW-------TENEQGEKISYY-------RGQTENDEA 331 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 R + I +G +L R + +I I Sbjct: 332 RYVVAKIQEEMGK---------PKRNYGSFAILYRTNAQSRVIEETL----LKANIPYTM 378 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 D I+D +A + + D +SF ++ P E + K+ + Sbjct: 379 VGGHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKRGIGETSLEKLRTFANDHGWS 438 Query: 466 VYEYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + E + + + I ++ + + IL S Sbjct: 439 LLEASKNIDLANEISSRAKNSISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKS 498 Query: 520 RFGNEVI---DVLDEFLNFTLRNEQNSY-----SSLQELISELEQYPPTIKRAHSANHNE 571 + + L+EF++ T + +Q++ +L +S+L +E Sbjct: 499 SKSLQAQTRLENLEEFISVTQKYDQDNPDQVGQDNLVNFLSDLALVSDQD--DLDEETSE 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVF++ +F Sbjct: 557 VTLMTMHAAKGLEFPVVFIMGMEEGLFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +S +E RL YVG+TRA ++L + Sbjct: 587 ----RAAQDESELQEERRLAYVGITRAKEKLYLT 616 >gi|257884411|ref|ZP_05664064.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501] gi|257887195|ref|ZP_05666848.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733] gi|257820249|gb|EEV47397.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501] gi|257823249|gb|EEV50181.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733] Length = 747 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 119/760 (15%), Positives = 241/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 34 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 94 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S + A Y++ + N +DF+DLI+NT L ++ S Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIVAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 385 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 445 EAAQNVELANIGGKAGQQLGSFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVSSKSAT 690 >gi|290893415|ref|ZP_06556400.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071] gi|290557066|gb|EFD90595.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071] gi|307571339|emb|CAR84518.1| ATP-dependent DNA helicase [Listeria monocytogenes L99] Length = 733 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537 Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|104773602|ref|YP_618582.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422683|emb|CAI97296.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 753 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 121/782 (15%), Positives = 239/782 (30%), Gaps = 135/782 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + +V+ N + ++ L Sbjct: 30 GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89 Query: 66 FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110 F L L + + Q ++ + + + D K+ L + + Sbjct: 90 FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K ++++ + + Y+ + +++ +LDF+DLI+ T L K S Sbjct: 150 KNCLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 Q+ ++L+DE QDT+ Q+E+ R L + + + VGD QSIY Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + + ++L ++RST IL + V EN + Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + + R Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + +D VL R + + + Sbjct: 334 VLAKIKEEVDK---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D IKD+MA + + + D +SF ++ P + K+ +Y Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTTKLAAFADEMGGGIY 440 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E ++ ++ K + I AQ + + IL + Sbjct: 441 EAMRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500 Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571 ++ L EF T R + + L L + + + + + Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEENIFPLSR----------------------------- 591 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 IK + EE RL YVG+TRA ++L + + + + Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDE 648 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 D + S + + + + + + + D Sbjct: 649 DLDIVASTAPKSSTSFIDLDRLPFAKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQ 708 Query: 752 NE 753 E Sbjct: 709 VE 710 >gi|237714589|ref|ZP_04545070.1| ATP-dependent DNA helicase [Bacteroides sp. D1] gi|262406455|ref|ZP_06083004.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22] gi|294643703|ref|ZP_06721503.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC 2a] gi|229445358|gb|EEO51149.1| ATP-dependent DNA helicase [Bacteroides sp. D1] gi|262355158|gb|EEZ04249.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22] gi|292640941|gb|EFF59159.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC 2a] Length = 792 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 103/686 (15%), Positives = 216/686 (31%), Gaps = 125/686 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y + ++ +DF+DL++ T L + + + + +++L+D Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPD---VLTRYQDQFHYVLVD 228 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q +I LT++ + + VGD+ QSIYSF GA+ +L +I Sbjct: 229 EYQDTNYAQHSIILQLTKE----------NQRICVVGDDAQSIYSFRGADIDNILYFTKI 278 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E + S Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRREYH-- 353 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + +L R + + R + IKD++A Sbjct: 354 -------YGYAEFAILYRTNAQSRIFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 402 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + + +++ + + Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATNHGVSLWAAVCEPLSYGLDINK 462 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I I + ++ T I+ E + ++E Sbjct: 463 GTHAKLQGFRELIEGFIADQADKNAYEIGTDIIRQSGIINDVCQDTSPENLSRKENIEEL 522 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + +V +MTVH+AKGLE Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKVTLMTVHSAKGLEFK 581 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D + R+ + Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVDYLRLPHEAGVSRAVD 667 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + R + + ++ P I N + G Sbjct: 668 EGAGRFRREIEGG----FARSTSPSRAPFGSNSSEQRERPKAQIIAPSVPRNLKKVSAVG 723 Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQV 792 ++ + S G+ + ++++ Sbjct: 724 GSSSAQMASSGSASVAGVQVGQMIEH 749 >gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557384|gb|ABD02341.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 787 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 118/679 (17%), Positives = 211/679 (31%), Gaps = 107/679 (15%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 K I+T+++N + + +++ T + + + YE+ Sbjct: 159 KEIVTKQLNLDERKFDPR--SVRYAISNAKNQGWTPADLERNQPNFRGRTIAQVYEIYED 216 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 N LDF++LI L ++ + + Q HIL+DE QDT+ Q+E+IR L Sbjct: 217 QLAANNALDFDNLIWIPVQLFRQNE---QVLAYWHQRFRHILVDEYQDTNRTQYELIRLL 273 Query: 200 TEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + ++ R++F VGD QSIY F GA+ +L + + + ++I Sbjct: 274 ATNGETRRSQLDWRNRSIFVVGDADQSIYRFRGADFTILLEFQETFGDGLPDDDTR-TLI 332 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RSTA IL + + T Sbjct: 333 KLEENYRSTATILQAANALIEKNTERIDKVLRPTR------------------------- 367 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 D + + A + TI + G D + Sbjct: 368 ---QQGNPIFLHQADDEIAE-------AEFVVNTIRRLHGQ-------NANAFSWGDFAI 410 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + + + I D IKD++A R + + D S + Sbjct: 411 LYRINAQSRPFEEVL----LRWGIPYTVVGGLRFYDRKEIKDVLAYLRVVANPADSFSLL 466 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYI-------QKFANCGISKFQHVIKYIHEL 491 ++ P + + K+ I A + I Sbjct: 467 RIINVPRRGIGKSTLDKLTEAAAALNVPLWAILSDETSVSSLAGRSAKPVIQFAQLIQHW 526 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQN-SYSSL 547 A S +L + ++ +E + + E N + E+ SL Sbjct: 527 HRQASQTSAATLIEGLLRDSGYLEDLKAQGTDEAEERAANVMELYNAARQFEEEQEDPSL 586 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + +S + +V +MT+H++KGLE PVVFLV +F + Sbjct: 587 EAFLSNVSLASDLDN--LQEGAEKVSLMTLHSSKGLEFPVVFLVGVEQGLFPN------- 637 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA +QL I Sbjct: 638 ---------------------------FRALEDPAALEEERRLCYVGITRAREQLYISHA 670 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 ++ + F ++ + I + S + P R Sbjct: 671 R-----ERMLYGNREPAIPSVFLSELPQELIIEFDGRGAVSRQLSHGSGLSLSDAPKARP 725 Query: 728 ETIKQLMDEQKIPKKLFSP 746 + ++ I +L P Sbjct: 726 NRRQSRSEQWAIGDRLQHP 744 >gi|294618098|ref|ZP_06697695.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679] gi|291595670|gb|EFF26966.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679] Length = 744 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 121/760 (15%), Positives = 242/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 91 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + Q+ + + +L + + Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIQYLTVTELTKEVLDRSGYLEDLKIQNT 501 Query: 523 NEVI---DVLDEFLNFTLR----NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T EQ + +L + + + + Sbjct: 502 LEAQARIENLEEFLTVTQEFDEQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687 >gi|326800328|ref|YP_004318147.1| UvrD/REP helicase [Sphingobacterium sp. 21] gi|326551092|gb|ADZ79477.1| UvrD/REP helicase [Sphingobacterium sp. 21] Length = 761 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 102/666 (15%), Positives = 208/666 (31%), Gaps = 118/666 (17%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + N + + Y + K +DF+DL+ TN LL + Sbjct: 150 ISAAEYQKNAQIQAEDQSGGRGNLGQIYQTYSQRCYKAGAMDFDDLLFKTNVLLNQHPE- 208 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + YK + ++++DE QDT+ Q+ +++ L + VGD+ QSI Sbjct: 209 --VLYKYQTKFKYLMVDEYQDTNFSQYLIVKRLAA----------INENICVVGDDAQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA + +L ++ + +L ++RST +I+ + + S +N Sbjct: 257 YAFRGANIQNILNFEKDYP--------DLKVFKLEQNYRSTQNIVNAANSIISNNKNQLK 308 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + S +++ + + ++ D+ Sbjct: 309 KNVFS---------------------------ENETGDKIKVVRAFSDNEEG-------- 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + +A I + + ++ KD +L R + + R L I Sbjct: 334 KMVAENI---------LQDRSLQSLRFKDFAILYRTNAQSRAMEEALRKL----NIPYKI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 IKDL+A R + D+ + ++ P + + +I ++ Sbjct: 381 YGGTSFYQRKEIKDLIAYFRLTFNPNDEEALKRVINYPRRGIGDTSVERIFIAADQHQKS 440 Query: 466 VYEYIQKFANCGISKFQHVI----KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 ++E I + V+ I +A+ S +D I + Sbjct: 441 IWEVITTPQQYLDGRTAAVVYPFGSLIQSFQVLAKNNSAYDTALHIAQHSGILKDLYEDK 500 Query: 522 GNE---VIDVLDEFLNFTLRNEQNS---YSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 E + + E LN + L + ++ + N + V +M Sbjct: 501 SVEGLNRYENIQELLNGIKEFSEREDIAEKGLDVFMQDIALLTNDD-NDKNPNADTVSLM 559 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H++KGLE P VF+V +F + Sbjct: 560 TIHSSKGLEFPQVFIVGLEENLFPSQLALNS----------------------------- 590 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN---QRTWYDMVYDSFHND 692 ++ EE RL YV +TRA +L + ++ N + D + + Sbjct: 591 -----RTELEEERRLFYVAITRAEKKLTLSYATSRYRWGTLNNCEPSRFIDEIDPRYLAL 645 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + +S + A + + + +PK + Sbjct: 646 DFSAPTASKSSGDDVFGKARTAWSQPQSQDIFTKPKPKVVPKTTSILPKAHQPSAGFAPS 705 Query: 753 EPYILN 758 + L Sbjct: 706 DTSNLQ 711 >gi|325838896|ref|ZP_08166702.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1] gi|325490637|gb|EGC92948.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1] Length = 741 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 127/757 (16%), Positives = 221/757 (29%), Gaps = 145/757 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKAAREMKERVEKLIGDRGKDVWIST 87 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL--------KEKLKKSQDEFIKIRDRFNTY 117 F + L + + I + L + L + ++ + Sbjct: 88 FHSMCVRILRRDIDLIGYDLNFGILDDTDQLSVIKTVMEELNLDPKRQSPKYFLNQISNA 147 Query: 118 KMFKSTLASLT------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 K T L + Y++ KN +DF+DL++ T L +K + Sbjct: 148 KNELKTPRDLRKEFENEDVIRVYEKYQQVLFKNNRVDFDDLLMLTVHLFEKEPE---VLA 204 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + +I IDE QDT+ Q+ +++ L + F R + VGD QSIYS+ G Sbjct: 205 FYQNKFQYIHIDEYQDTNNAQYTIVKMLAKKF----------RNICVVGDSDQSIYSWRG 254 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A + +L + +++ L ++RS IL + V + Sbjct: 255 ANIENILSFEHDYP--------DATVVLLEQNYRSKQMILNAANDVIKNNSGRRDKK--- 303 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 LW + + D + A IA Sbjct: 304 ------------------LW-------SDRGVGDVIEYYRATDGDVE-------ATYIAD 331 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 IS M + + VL R + I I Sbjct: 332 KISYMHRDAH----------EYHEFAVLYRTNSQSRAIEQAL----LRQNIPYRLVGGQS 377 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-----TV 466 IKDLMA R IL+ +DDLSF ++ P + K+ E+E ++ Sbjct: 378 FFKRKEIKDLMAYLRLILNPDDDLSFARVVNEPKRGIGATSVDKLKVFAAESELSCMASI 437 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 + ++K I+ + S + ++L Q E Sbjct: 438 QDATGVIPKATLNKMMDFKTMIYMMRMEMDTYSMVELIDMVLERTGYLQMLKDEKTIEAD 497 Query: 527 ---DVLDEFLNFTLRNEQNSYSS-------------------LQELISELEQYPPTIKRA 564 D L+EF + E+ L L+++L Sbjct: 498 SRIDNLEEFKSMAGHFEEQELDLILAEEESEERAEDLPTSVKLTILLNDLMLQTDVE-TE 556 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 +N ++V +MT+H AKGLE PVVFL VF + + + Sbjct: 557 EESNESKVTLMTIHAAKGLEFPVVFLCGFEDGVFPLRSAIEEGADELEEE---------- 606 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 RL YV +TRA D LII + Sbjct: 607 -----------------------RRLAYVAITRAEDILIITNAQSRYQYGNRTANPESMF 643 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + ++ + E P+ Sbjct: 644 IREISEEYLNKTGVQSRPRPSFSLSEVLEPKKEEPKR 680 >gi|260889954|ref|ZP_05901217.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254] gi|260860560|gb|EEX75060.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254] Length = 735 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 119/711 (16%), Positives = 230/711 (32%), Gaps = 140/711 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ + Y+ + +S +N + ++A L + Sbjct: 28 GAGSGKTRTVTYRIAHMVKEIGISPLNILALTFTNKAAREMKERATALIGHEANNLVVST 87 Query: 66 FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEKLK--KSQDEFIK 109 F S L QK+IIT+ + ++ K + K Sbjct: 88 FHSFSVRLLKTYSERIGYGRNFNIYDVDDQKSIITKIKKDMGIKDNDNVQPGKLANRISK 147 Query: 110 IRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++++ K + + L + Y+E K N +DF DL++N LL Sbjct: 148 LKEQGIGIKELEREIDMRIPANRLFGEIYQKYDEVLKANNAMDFSDLLLNARKLLDD--- 204 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 A++ +I + +I++DE QDT+ IQ+E+I + E + R + VGDE QS Sbjct: 205 -AFVLERIQERYQYIVVDEYQDTNDIQYEMINLIAEKY----------RNICVVGDEDQS 253 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY+F GA +L +R ++ ++L ++RST IL +++ ++++ Sbjct: 254 IYAFRGANINNILNFERDYKEAF--------TVKLERNYRSTKKILDTANELIKNNKSSK 305 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 G + LW + ++ + + Sbjct: 306 GKT---------------------LW-------TDGSDGEKIKIYNAMTVYDE------- 330 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A I + KD+ +L R + ++ I Sbjct: 331 ADFIVTEMKKKKRDG----------ADYKDMTILYRTNAQSRVLEEKL----LSANIPYK 376 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464 IKD++A + ++ D+ +F ++ P + E + KI + Sbjct: 377 IYGGMQFFQRKEIKDILAYLSLLNNKNDNHNFYRIINVPKRSVGEKTLEKIQEVANEKNI 436 Query: 465 TVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 ++ E + + + + + + S + F IL + Sbjct: 437 SMLEALHYIDEIPVRAATKLALKEFYNLMQSIYSSLEEMSIKEIFDEILIRTRYIDSI-E 495 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + + ++E LN E+ + S SL E + + T + N V++MT+H Sbjct: 496 DNKEDRVRNIEELLNSITEIEKQNPSMSLNEYLDMISLSSATD--EMEDDENYVKLMTIH 553 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 ++KGLE VFL +F Sbjct: 554 SSKGLEFDYVFLAGMEDGLFPSISFDAPEEELEEERRL---------------------- 591 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKH-----SNTSNEKKSNQRTWYDM 684 YV +TRA +L I + + R Y+M Sbjct: 592 ------------CYVAITRAKKELFISYSSSRKIWGKDDNLRRPSRFIYEM 630 >gi|187250626|ref|YP_001875108.1| superfamily I DNA and RNA helicase [Elusimicrobium minutum Pei191] gi|186970786|gb|ACC97771.1| Superfamily I DNA and RNA helicase [Elusimicrobium minutum Pei191] Length = 786 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 138/802 (17%), Positives = 253/802 (31%), Gaps = 152/802 (18%) Query: 32 NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL--------------LSSFFLTQK 77 + ++ + L + F L+ F Sbjct: 55 RILAVTFTNKAAAQMRERVEALAPGQSGRVWIHTFHSFGVRLLRQNAHLLKLTKDFAIYD 114 Query: 78 FTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + QK IIT ++ K+ + +++D+ I S + Sbjct: 115 ESEQKKIITLVLQEMGQKDAKKEINQYISLISRAKDDMID--PESFAISALASNIDFKIR 172 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+ LDF DL++ T +LLK + +R HIL+DE QDT+ Sbjct: 173 AAEVYKRYQNKLNAAGALDFGDLLVKTAELLKNNED---VREYYQNIFQHILVDEYQDTN 229 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R+L R L VGD QSIYS+ GA + +L ++ Sbjct: 230 HTQYIITRTLA----------YKHRNLCVVGDPDQSIYSWRGANIRNILEFEKDFP---- 275 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 II L ++RST IL +K+ + + S S T ++ Sbjct: 276 ----DAKIITLEQNYRSTQIILDSSNKLIKKNKKRKDKSLYSNKT---------SGEPIE 322 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + E + + AR A I+N+I Sbjct: 323 VRELLTEGEE--------------------------ARWTAQNIANLIEDG--------- 347 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 DI V R + R Y++ D IKD++ R ++ Sbjct: 348 -ASLNDIAVFYRTNAQSRNFEDNFR----KYQLPYRLIGAVRFYDRREIKDILGYARVLV 402 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFAN------CGISKFQ 482 + D +S + +L +P + K + ++Y+ +Q+ A Q Sbjct: 403 NPLDTVSLLRILNTPKRGIGKTAEEKFLEYANLHNISLYQALQRSAFVEGLTPTARRAAQ 462 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTL 537 I + L + SP D IL + + +D L E +N Sbjct: 463 EFINLMDTLRLELKVTSPTDIVNKILTLSGYWKAVEDEVEKDLEAGARLDNLQELVNAVK 522 Query: 538 RNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 E+ +SL + + E+ ++ ++ V +MTVH AKGLE PVVF+ Sbjct: 523 EYEERMARTEREASLSDFVQEISLITGADEKQ-DSSAGAVTLMTVHLAKGLEFPVVFVSG 581 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F + EE RL Y Sbjct: 582 LEEGLFP------------------------------------LSSKDDDDLEEERRLCY 605 Query: 653 VGMTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 V MTRA D+L + S + +N + + ++ + + + Sbjct: 606 VAMTRAKDRLFMTYTSTRRIFGKMYTNLPSRFLFESGLITEEQEGPLNRQSTVMPNYGGY 665 Query: 711 AYEWSTHHPENTPLER-EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 ++ + + E + ++K + + + + + + + + G+ Sbjct: 666 KTKYGSKYGETQNRPSFKPFFAAPKKQKKYDEHGYEIEEQEGDYGAPIGCAPLGIAGENE 725 Query: 770 LESLLSDNQTFNRGLII-HKLL 790 ++ Q G + H + Sbjct: 726 APAVHVSAQGPRTGQRVRHGVF 747 >gi|254832504|ref|ZP_05237159.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes 10403S] Length = 733 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537 Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|300775551|ref|ZP_07085412.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910] gi|300505578|gb|EFK36715.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910] Length = 776 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 105/672 (15%), Positives = 199/672 (29%), Gaps = 124/672 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y E +N +DF+DL++ TN+LL + + K +I++DE QD Sbjct: 172 KFIGQIYQRYVEQCFRNGSMDFDDLLLKTNELLTRFPE---VLAKYQDRFRYIMVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++++L F + VGD+ QSIYSF GA +L K+ Sbjct: 229 TNHSQYLIVKALASKFE----------NICVVGDDAQSIYSFRGANIYNILNFKKDYP-- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST +I+ + V + + S Sbjct: 277 ------DAKTVSLEQNYRSTQNIVNAANVVIAKNLQQFKKNVFS---------------- 314 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 D++ + + + S D+ A +A I + D Sbjct: 315 -----------DNEEGDKIKIYRSLSDADE--------ANFVAGNIWELRNRDQR----- 350 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R T R I +KDL+ R Sbjct: 351 ----KYSDFAILYRTNSQTRAFEDALR----RKNIPYKVYGGLSFYQRKEVKDLIGYLRL 402 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----------ETETVYEYIQKFANCG 477 ++++ D + + ++ P E K+ + +Y N Sbjct: 403 LINENDSEALMRIINYPARGIGETTQNKLIVFADAHNIAVSKVLDNLPMYAPQLGLNNGV 462 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534 ++K I + + + + + + E ++ + E +N Sbjct: 463 LNKLNDFWSMIKAFQVLLKTETAYSVAMEVAKRSGLIKFLKDDQTPEGISRVENVQELMN 522 Query: 535 FTLRNEQN------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 + SL + + T + + V +MT+H +KGLE PVV Sbjct: 523 SMQGFIEEQMQLEDGDPSLSNFLENIALSADTQDKELE--DDMVSLMTIHLSKGLEFPVV 580 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 LV +F + + EE Sbjct: 581 HLVGLEENLFPS----------------------------------FMSSATREDLEEER 606 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RL YV +TRA Q + K + + + + Sbjct: 607 RLFYVALTRAEKQAFFSYAVSRFQWGKITDAEPSRFLSEIDDEYIEFLNPAMEKRFINNS 666 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 + HP ++ K + + ++ I+NPS ++ Sbjct: 667 GVKSNIFDEHPSEMRSFKKVEKKTIDRGETSKPAPEVRKLKPVSTAKIINPSGASSQDIE 726 Query: 769 NLESLLSDNQTF 780 + + D Sbjct: 727 VGDKVRHDRFGI 738 >gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS] gi|119870445|ref|YP_940397.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS] gi|108771713|gb|ABG10435.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS] gi|119696534|gb|ABL93607.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS] Length = 785 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 105/635 (16%), Positives = 192/635 (30%), Gaps = 127/635 (20%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + A Y+ + LDF+DLI T +L++ I + HIL+DE Sbjct: 184 LARIIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFP---QIAQYYRRRFRHILVDEY 240 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+ ++R L +P L VGD QSIY+F GA + + +R Sbjct: 241 QDTNHAQYVLVRELVGGG-AHDTGEVAPAELCVVGDADQSIYAFRGATIRNIEDFERDYP 299 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I L ++RST IL + V + + Sbjct: 300 N--------ATTILLEQNYRSTQTILNAANSVIARNAGRREKR----------------- 334 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + + + + AR +A I + Sbjct: 335 ----LW-------TDSGHGELIVGYVADNEHDE-------ARFVAQEIDRLADDGH---- 372 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 D V R ++ + + I + I+D++A Sbjct: 373 ------SYNDFAVFYRTNNNSRALEEVF----IRAGIPYKVVGGVRFYERREIRDIVAYL 422 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF--- 481 R + + D +S +L +P + + + + + +Q A + Sbjct: 423 RVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGASFNDALQAAAEGKVPMLNTR 482 Query: 482 -----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 ++ + +L + +L R + + + +D L+E + Sbjct: 483 SEKCIASFVQMLDDLRGRLGDE-LGELVEAVLDRTGYRAELEASNDPQDLARLDNLNELV 541 Query: 534 NFTLRN--EQNSYSSLQE---------------LISELEQYPPTIKRAHSANHNE--VRI 574 + ++ + ++L E L LE+ H V + Sbjct: 542 SVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHGSGVVTM 601 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+HTAKGLE PVVF+ +F H Sbjct: 602 MTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDP--------------------------- 634 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + E RL YVG+TRA +L + + S+ + + + Sbjct: 635 -------NELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELID 687 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729 ++ N + S + R Sbjct: 688 WRRTDPENRRPSFSAPSRMSSGSSGTSFGAPRPSP 722 >gi|152968347|ref|YP_001364131.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] gi|151362864|gb|ABS05867.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] Length = 1123 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 137/923 (14%), Positives = 279/923 (30%), Gaps = 99/923 (10%) Query: 54 QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113 Q S + +LL L+ + ++K ++ + L +Q +R Sbjct: 244 QAVSAATDRWDVLALLGDVKLSSSGGRKPAWQQAGLDKA--EVVDALAHAQRAVEDLRSA 301 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 T + +L A + +++ L F DL++ DLL++ +R ++ Sbjct: 302 VGAATTKTLTA---RVQDWLLAE-ADRRRELGALSFHDLLVLARDLLRRN---RDVRERL 354 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRTLFAVGDEKQSIYS 228 + +LIDE QDT +Q E+ L D + +P LF VGD KQSIY Sbjct: 355 HAQWPVLLIDEFQDTDPLQVEIACLLAGDCGEEPPEQWQEIPVAPGRLFFVGDAKQSIYR 414 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F GA+ ++++ L ++FRS +L + F A Sbjct: 415 FRGADVATFTAVGDLHERG---------RTGLAVNFRSVPGVLEAANHAFRTLIGAD--P 463 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +R G V + ++ A Sbjct: 464 AAGIAYADLHPARDGGADGVDVPVLLLGGDRDVPAGALRDL---------------EAEH 508 Query: 349 IAYTISNMIGTDTIFS----------NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A I+ +R Q +D+ VL+ R I Sbjct: 509 VADVIARAKAEGWPVEASTRHPDGTSTRGQRPAQYRDVTVLLPTRTPLASIERALE---- 564 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 I R ++ A++ ++AL + + S D ++ + L+ P + D+ + Sbjct: 565 GRDIPYRVESRSLVWSTDAVRAVLALLQAVDSPADQVALLAALRQP--GLACSDVDLVGW 622 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + ++ + + + ++ + + Sbjct: 623 RAAGGRWSIHAAVPEGIDEQHPVAAALRTLRRWHEQRWWVPVNQLVEEVVRELRLVELTA 682 Query: 519 -SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEV 572 R + L ++ S L +S + + + V Sbjct: 683 SQRRPRDHWRRLRFVVDQAREWCDRGGSGLTGFLSWTVRQQQDSADLVETVVPEPDDDAV 742 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 RI+TVH +KGLE PV + + P + + Sbjct: 743 RILTVHGSKGLEFPVTVVAGLNGSGRDDATVLWAPDGPLVRFRADVLEMPG--------W 794 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS---- 688 + K +++E RLLYV +TRA D L++ + S S + ++++ DS Sbjct: 795 RQASQDEKAESEQEAIRLLYVALTRAQDHLVVGCYHKPSRTGGSRAQKLWELLADSGLAR 854 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 ++ R ++ + + +R E ++Q + Sbjct: 855 CESEPRAQRAAQGTAPATPFQVLVPEDEGRTARDLPDRAEFLEQRAALLAALHAAVATSA 914 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQT-----------------FNRGLIIHKLLQ 791 + + + S + + E D G +H++L+ Sbjct: 915 TAVRQATAVPTSGPSREEEPAKEHDAPDTTAGDEAGVRPPRRTTRRRGAAVGTAVHRVLE 974 Query: 792 VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVS 850 + L R+ A + L P++ A ++ EV Sbjct: 975 -LADLRSPSREEVRRLAEAVCAAEQVPDSTGEVEQRAWSALTAPVVRDAADGGRTWREVY 1033 Query: 851 VSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYE 908 + + G +D ++ + + + +YKT ++ + QL Y Sbjct: 1034 LVV----DDGQRYLEGYVDLLAETSTGELVVVDYKTDRVRSAADVAAKEQHYAGQLDAYA 1089 Query: 909 KILKDSYPNKSLVCLLIYVSEPK 931 L + L++ + Sbjct: 1090 DALARVLGRRPDDTRLVFAQPGE 1112 >gi|304385365|ref|ZP_07367710.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM 20284] gi|304328572|gb|EFL95793.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM 20284] Length = 760 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 118/700 (16%), Positives = 214/700 (30%), Gaps = 145/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L ++ Sbjct: 33 GAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTNKAAREMRERVANLLGEVASEIWVST 92 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + + + +++ +K L + R K+ + Sbjct: 93 FHALCVRILRRDIEQIGYNRAFSIADPSEQRTLIKHVLADLNYDPKVYDPRSVLGKISNA 152 Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + + Y+ K N LDF+DLI+ T L ++ + Sbjct: 153 KNDLMTPADYQENASNPHDEAVGKIYDEYQRRLKANQALDFDDLIMQTIRLFEQSPET-- 210 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q++++ L + F R L VGD QSIY Sbjct: 211 -LQFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKGF----------RNLCVVGDSDQSIYG 259 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + + L ++RST +IL + V + + Sbjct: 260 WRGADMQNILNFESDYP--------DAHTVMLEQNYRSTQNILNAANDVIANNVERKPK- 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 QLW + S+ + Sbjct: 311 --------------------QLW-------TDNAEGAKISYYRGQTGNDEVH-------F 336 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I I D +L R + LI I Sbjct: 337 IVQQIRKQIEE---------NNFDYGDFAILYRTNAQSRLIEDTF----VKANIPYTMVG 383 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D I+D+++ I ++ED +SF ++ P + K+ + ++ Sbjct: 384 GHKFYDRKEIRDVLSYLTLIANEEDSMSFERVINEPKRGIGATSMAKLQAFADENSWSLL 443 Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + A + + K I L A+F S + +L R Sbjct: 444 QAARNVQIANGIARRTRNAIEDFAKTIDALRKSAEFLSITELTETLLDKTGYRAALEQTR 503 Query: 522 GNEVI---DVLDEFLNFTLRNEQNSYSS-------------LQELISELEQYPPTIKRAH 565 E + ++EFL T + ++ + + L + +++L Sbjct: 504 TMEAEARLENINEFLTVTKQFDEQNDAEGTEVADENGDNVRLVDFLADLALVSDQD--DV 561 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + V +MT+H AKGLE PVVFLV VF Sbjct: 562 EEEPSAVTLMTLHAAKGLEFPVVFLVGMEEGVFPLS------------------------ 597 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA +L + Sbjct: 598 ----------RAATDPDELEEERRLAYVGITRAQKKLYLT 627 >gi|229823253|ref|ZP_04449322.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271] gi|229787419|gb|EEP23533.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271] Length = 798 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 117/738 (15%), Positives = 221/738 (29%), Gaps = 149/738 (20%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 G ++ L ++ + + QV+ N + ++ Q L + Sbjct: 34 AAGAGSGKTRVLTHRIAYLIQERQVNPWNILAITFTNKAAAEMRERVQRLVGEEASSIWV 93 Query: 64 ERFSLLSSFFLTQKFT--------------PQKNIITQEINKKSPDLKEK-LKKSQDEFI 108 F + + L ++ Q+ ++ Q + + D + K Sbjct: 94 ATFHAMCARILRREIETLGYAKNFTIIDQGEQQTLMKQVLRDLNLDSDQYNYKDLLWVID 153 Query: 109 KIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 +++ F ++ + + + +Y++ K LDF DLI+ T LL++ Sbjct: 154 AAKNQGYLPDDFLASDSGYIHEIHANIYRNYQKRLKAANALDFNDLILLTVRLLEQNPT- 212 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 IR Q+ +I +DE QDT+ Q+ +++ L + + VGD QSI Sbjct: 213 --IRQFYQQKFQYIHVDEYQDTNHSQYRLVQLLAGLL----------KNICVVGDADQSI 260 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA +L ++ + +I L ++RST IL + V + Sbjct: 261 YGWRGANMANILNFEQDYPQ--------AKVILLEQNYRSTQTILKAANSVIENNLQRKD 312 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 QLW D Q + + +++ D A Sbjct: 313 K---------------------QLWS------DGQVGEKIQIYSADSDLEE--------A 337 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + TI ++ + + VL R + + + + Sbjct: 338 DFVTRTIRHLRDQE---------GANYSQVAVLYRTQAQSRGLEEAL----LRSNMPYKV 384 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TET 465 I+D +A R + + D+LS ++ P + K+ + Sbjct: 385 VGGLKFYARKEIQDTLAYLRLLDNPHDNLSLNRIINVPKRGIGATTVTKLAEFADSLGVS 444 Query: 466 VYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E I + K I L F D + + Sbjct: 445 WFEAIGRLHFSNFSASVQKKLLDFAHLIETLRQQVPFLPLRDLTEEVWDKTGYLKSLKEE 504 Query: 521 FGNEVI---DVLDEFLNFTLRNEQNS-YSSLQELISELEQYP------------------ 558 E + L+EF + + +Q + L++ L Q Sbjct: 505 GTVEAANRLENLEEFASVVTQFDQTEREAILEQDPDYLAQTQGQEEVALAPLTQFLTDVS 564 Query: 559 -PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 T ++V +MT+H AKGLE P VF+V +F + Sbjct: 565 LMTDADNQEEALDQVTLMTLHAAKGLEFPYVFMVGMEEGLFPLR---------------- 608 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 EE RL YVGMTRA L + ++ Sbjct: 609 ------------------RASENPDELEEERRLAYVGMTRAERALYLTASKRRLQYGRTV 650 Query: 678 QRTWYDMVYDSFHNDERV 695 + + + Sbjct: 651 TNPPSRFLDEIQPDLVEW 668 >gi|121607642|ref|YP_995449.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121552282|gb|ABM56431.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] Length = 1140 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 140/934 (14%), Positives = 290/934 (31%), Gaps = 72/934 (7%) Query: 24 PYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN 83 N T K AQ + +A + L Sbjct: 257 ADACRQRWLARAKALGAESNKTPQKAAQAIIEAFASTDANLCLDRLRQALF--------- 307 Query: 84 IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143 + T + K+ + +++ E ++ D + ++ + L + L+A + K + Sbjct: 308 VATADRLAKNLEKFAAAQEAAPELRRLLDARRQHAAWQHQQSMARLTRCLSAQFAAVKNQ 367 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 + +D D+ + +L +S W++ ++D I H+L+DE QDT+ +QW+ + + + Sbjct: 368 HGWVDMNDVERSAQRMLADPVLSGWVQQRLDARIRHLLVDEFQDTNPLQWQALHAWLSGY 427 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + ++F VGD KQSIY F AEP+ + + G ++ + Sbjct: 428 AGAG-GGGAAPSVFIVGDPKQSIYRFRRAEPQVFMAAQT-----FVRNGLGGDLLSCDHT 481 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQC 322 R+ + V++V + Q +S S+ G V ++ Sbjct: 482 RRNATGVTAAVNQVMGQAQAQQEISGFRAH-----STESQDPGAVLRLPAILPAPARDGA 536 Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382 + +W E + + + +LVL RK Sbjct: 537 DADPLAWRDSLTEPRHEPEETR-------RMRECAQAAAWVAAQIAAGTPPGQVLVLARK 589 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 R + R L + V ++ L D ++DL+AL ++S DLS LK Sbjct: 590 RDRLSAMQDALRAL----HLPCVQPEKADLFDAPEVQDLVALLDALVSTGHDLSLARALK 645 Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK---YIHELIHIAQFCS 499 SPLF ++ + + R E + ++ + + Sbjct: 646 SPLFGLGDEALAALARLRREPGHAASSWYELLQKRELLTGDLLAPGPVLAQYKAWVDAWP 705 Query: 500 PHDFFTLILGAKKGR----QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 PHD I + V L L+ L+ + Y + + L+ Sbjct: 706 PHDALHAIYQHADVLARFAAAAPAAQRQAVQAQLRALLSAALQYDGGRYLTPYAFVRALK 765 Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + A +R++TVH AKGLE+ V L+DT ++ + + + P Sbjct: 766 KGGLRAPGRVDAQ--AIRLLTVHGAKGLEAHCVLLLDTDTRPPKAETMGVLLDWPGERVV 823 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 P I++ + +++ Q E LLYV MTRA L + + Sbjct: 824 PASFIFLASETHPPPSAEAALAAEQQARQREELNLLYVAMTRARHSLALSSVQPAHDAPG 883 Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735 S + + S + + + E Sbjct: 884 SWWQRLEPLAAPVQMPAPGEPTTASAASTSPSSPSSPTPPAAGDTHEHFTLAELPPPSAY 943 Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV--- 792 + P + + G +H+LL+ Sbjct: 944 LSTPLPAHLPDHLSTPLRPAPQGHAPENHGTDPGTP-------ATRLGEAMHQLLEQAGV 996 Query: 793 ----IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 + L + ++ + + + L + + A Sbjct: 997 AGAPLAELRAQGWPAARLARLAQDFDI--SMDAAWLAAQTAQRILTGAGAWAWDATVVDH 1054 Query: 849 VSVSGKINCPKKDIIISGRIDQISI-----SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903 S + + + + D++ + ++ +YK+ ++ + Q Sbjct: 1055 ASNEALLRDQGQSLRL----DRLVHCRHPAERAGWWVLDYKSAAAPERQPALLA-----Q 1105 Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 L Y ++ P + + + + ++ ++P Sbjct: 1106 LQRYRAAVQRQTPGERVHAAFL-SGDGRMVLLPD 1138 >gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 852 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 112/774 (14%), Positives = 222/774 (28%), Gaps = 161/774 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ + ++ L + Sbjct: 78 GAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMWVST 137 Query: 66 FSL---------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQ--D 105 F L++ F + ++T +++ ++ +Q + Sbjct: 138 FHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLLTMIAKDMQLDLKKYSARVLANQISN 197 Query: 106 EFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++ + T + + Y+ + +DF+DLI + + Sbjct: 198 RKNELISPEQARAEAERTKNPFEITVASVYEEYQRRLRAANSVDFDDLIGEVVRIFNQHP 257 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + H+LIDE QDT+ Q+ ++ +L L VGD Q Sbjct: 258 ---QVVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGR----GELPPDAPELCVVGDSDQ 310 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY+F GA + + +R + I L ++RST IL + V + E Sbjct: 311 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNEGR 362 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW + +Q + + Sbjct: 363 REKN---------------------LW-------TAHGQGEQIVGYVADNEHDE------ 388 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR IA I ++ T DI V+ R + + + I Sbjct: 389 -ARYIASEIDSLADKGTA----------YSDIAVMYRTNNASRALEDIF----VRSGIPY 433 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 + I+DL+A R + + +D +S ++ P + +I Sbjct: 434 KVVGGTRFYERREIRDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLG 493 Query: 465 TVYEYIQK---------FANCGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLI 507 + + ++ + + + + + Sbjct: 494 VSFGAALRDAAAGKVAGLGTRAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPDLGELLNAL 553 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-------------EQNSYSSLQE-- 549 L A R + + + +D L+E ++ + L E Sbjct: 554 LDATGYRAELENSNDPQDGARLDNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGE 613 Query: 550 -----LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L + LE+ +H V +MT+HTAKGLE PVVFL F H Sbjct: 614 AAPGSLQAFLEKVSLVADADQIPDHESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMR 673 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 E RL YVG+TRA +QL Sbjct: 674 SLGDP----------------------------------KELSEERRLAYVGITRAREQL 699 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + + S+ + + + ++ + +S++ + Sbjct: 700 YLTRAILRSSWGNPVTNPASRFLAEVPEDLIDWRREEPDSSLSSAWGGDDSYQY 753 >gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073] gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073] Length = 729 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 113/613 (18%), Positives = 191/613 (31%), Gaps = 115/613 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+E ++ +DF+DLI+ T L ++ + + Q HIL+DE QDT+ Sbjct: 173 QIYRRYQEKLRELNAMDFDDLIMQTVFLWQQNPL---VLRYYQQRWQHILVDEYQDTNHA 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++R L L VGD Q IY + GA+ +L + + Sbjct: 230 QYILVRLLAG----------KGDNLCVVGDPDQGIYGWRGADIGNILAFEEDFPR----- 274 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RST IL + V E + LW Sbjct: 275 ---ARVILLEENYRSTRPILQAANAVIQHNEGRREKR---------------------LW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + D + R IA + + Sbjct: 311 -------TRRREGELLHLYRATDERDEG-------RFIAGEVYRRHQQEGRP-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D VL R + + + IKD++A R I + Sbjct: 349 -FSDFAVLYRTHAQSRALEEAF----IQAGVPYEIVGGLKFYQRKEIKDILAYLRVIANP 403 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVY------EYIQKFANCGISKFQHV 484 +D LS + ++ P E + ++ E E++Y + I G + + Sbjct: 404 DDSLSLLRIINVPRRGIGEATLARLEAAATSEGESLYRVLERVDTIPGIPARGRQALREL 463 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 ++ + L + + D IL + + + E + L EF T +Q Sbjct: 464 VEMLDNLRQQQEKITVTDLVATILQETGYQAELEAERTPEAQARLENLKEFQTVTRSYDQ 523 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + S L L Q + + + V +MT+HTAKGLE PVVFL VF H Sbjct: 524 GAPES--SLGDFLTQVALVAESDTYSGNAAVALMTMHTAKGLEFPVVFLAGLEEGVFPH- 580 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YVGMTRA + Sbjct: 581 ---------------------------------FRSLDDPAEMEEERRLCYVGMTRAREV 607 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L + + + + + + + + L + + + Sbjct: 608 LYLTHAWTRNLYGSTMSNPPSRFLDEIPADLIQGEGTGLRSGVLSRTSEERDDRGRSTRR 667 Query: 722 TPLEREETIKQLM 734 P T Sbjct: 668 QPAPARSTRASWQ 680 >gi|226224362|ref|YP_002758469.1| ATP-dependent DNA helicase [Listeria monocytogenes Clip81459] gi|225876824|emb|CAS05533.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 731 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 241 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 283 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 359 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 415 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 416 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 475 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 535 Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 586 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 621 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELGNE 648 >gi|293376176|ref|ZP_06622421.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909] gi|292645163|gb|EFF63228.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909] Length = 741 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 125/757 (16%), Positives = 221/757 (29%), Gaps = 145/757 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ + L Sbjct: 28 GAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKAAREMKERVEKLIGDRGKDVWIST 87 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL--------KEKLKKSQDEFIKIRDRFNTY 117 F + L + + I + L + L + ++ + Sbjct: 88 FHSMCVRILRRDIDLIGYDLNFGILDDTDQLSVIKTVMEELNLDPKRQSPKYFLNQISNA 147 Query: 118 KMFKSTLASLT------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 K T L + Y++ KN +DF+DL++ T L ++ + Sbjct: 148 KNELKTPRDLRKEFENEDVIRVYEKYQQVLFKNNRVDFDDLLMLTVHLFEREPE---VLA 204 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + +I IDE QDT+ Q+ +++ L + F R + VGD QSIYS+ G Sbjct: 205 FYQNKFQYIHIDEYQDTNNAQYTIVKMLAKKF----------RNICVVGDSDQSIYSWRG 254 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A + +L + +++ L ++RS IL + V + Sbjct: 255 ANIENILSFEHDYP--------DATVVLLEQNYRSKQMILNAANDVIKNNSGRRDKK--- 303 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 LW + + D + A +A Sbjct: 304 ------------------LW-------SDRGVGDVIEYYRATDGDVE-------ATYVAD 331 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 IS M + + VL R + I I Sbjct: 332 KISYMHRDAH----------EYHEFAVLYRTNSQSRAIEQAL----LRQNIPYRLVGGQS 377 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-----TV 466 IKDLMA R IL+ +DDLSF ++ P + K+ E+E ++ Sbjct: 378 FFKRKEIKDLMAYLRLILNPDDDLSFARVVNEPKRGIGATSVDKLKVFAAESELSCMASI 437 Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 + ++K I+ + S + ++L Q E Sbjct: 438 QDATGVIPKATLNKMMDFKTMIYMMRMEMDTYSMVELIDMVLERTGYLQMLKDEKTIEAD 497 Query: 527 ---DVLDEFLNFTLRNEQNSYSS-------------------LQELISELEQYPPTIKRA 564 D L+EF + E+ L L+++L Sbjct: 498 SRIDNLEEFKSMAGHFEEQELDLILAEEESEERAEDLPTSVKLTILLNDLMLQTDVE-TE 556 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 +N ++V +MT+H AKGLE PVVFL VF + + + Sbjct: 557 EESNESKVTLMTIHAAKGLEFPVVFLCGFEDGVFPLRSAIEEGADELEEE---------- 606 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 RL YV +TRA D LII + Sbjct: 607 -----------------------RRLAYVAITRAEDILIITNAQSRYQYGNRTANPESMF 643 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + ++ + E P+ Sbjct: 644 IREISEEYLNKTGVQSRPRPSFSLSEVLEPKKEEPKR 680 >gi|256785725|ref|ZP_05524156.1| ATP-dependent DNA helicase II [Streptomyces lividans TK24] gi|289769617|ref|ZP_06528995.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24] gi|289699816|gb|EFD67245.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24] Length = 831 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 120/728 (16%), Positives = 226/728 (31%), Gaps = 134/728 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D F+ T Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 233 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 234 ---LAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287 Query: 187 DTSLIQWEVIRSLTEDFFVG-----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DT+ Q+ ++R L P L VGD QSIY+F GA + +L+ + Sbjct: 288 DTNHAQYALVRELVGVPSEHPVDVPPEAEVPPAELCVVGDADQSIYAFRGATIRNILQFE 347 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I L ++RST IL+ + V E+ + + Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 386 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW +Q + Q + + A+ +A I + Sbjct: 387 --------LW-------TNQGSGAQITGYVADTEHDE-------AQFVADEIDRLTDAGE 424 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +A D+ V R + + + + + ++D+ Sbjct: 425 ---------AKAGDVAVFYRTNAQSRVFEEVF----IRTGLPYKVVGGVRFYERKEVRDV 471 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480 +A R + + ED + +L P + I + E + + +++ Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFPQALRRVDEAYGMA 531 Query: 481 FQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 + + +L I + + P IL + + + I+ L Sbjct: 532 ARSANAVKRFNTLMEDLRTIVESGAGPATVLEAILERTGYLAELQASTDPQDETRIENLQ 591 Query: 531 EFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLE 584 E L EQ L + + ++ + + + + V +MT+HTAKGLE Sbjct: 592 ELAAVALEFEQERAEGEEAGTLADFLEKVALVADSDQIPDEEDGDGVVTLMTLHTAKGLE 651 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVFL VF H + Sbjct: 652 FPVVFLTGMEDGVFPHMRALG----------------------------------QAKEL 677 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 EE RL YVG+TRA ++L + + + S + + + + K+ Sbjct: 678 EEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPSRFLEEIPAPHLEWKRTGANGPA 737 Query: 705 NKDEWIAY 712 Sbjct: 738 PSAPVSGV 745 >gi|329767683|ref|ZP_08259202.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341] gi|328839033|gb|EGF88621.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341] Length = 1212 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 144/899 (16%), Positives = 301/899 (33%), Gaps = 118/899 (13%) Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKI 173 KM + + + K L+ + + K++N LDF DL L K + + + Sbjct: 350 KMSELSRTITKVLKNLHNDFIKRKRENNFLDFSDLNHLAIKALTKEENGEIIPSEAANYY 409 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 + I +DE QD + +Q ++ + F VGD KQ+IY F G+ Sbjct: 410 REYFYEIYVDEYQDNNNLQEYILNLI----------RGEGVNFFRVGDVKQAIYGFRGSN 459 Query: 234 PKRVLREKRINQKRATNA-----------GQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 P ++ +K + + + L +FRS +IL + VF+ Sbjct: 460 PDLFEQKYNSYRKLEIDNYSVNEEYSFEDDSEGICVVLKENFRSDENILKSSNFVFNRLM 519 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + + ++ + + ++ + +++ Sbjct: 520 GNKNAGVSYDEDSALYYPEAKERQDTEIMPT-------KLINGKVNYYTGEIVENKKNYR 572 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 IAY I I + D VLVR + + Y I Sbjct: 573 EQSIENIAYEILQGIKNGK----------KYSDYAVLVRNSTKMSSFKEIF----SKYNI 618 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 + ++ T+ L + RF+ + D S + +L + +F++S D++ ++ Q+ + Sbjct: 619 PLFFKEKVGFTESNCFNILYNILRFLDNTNRDASLLAILHTEIFDYSNDELLRVSLQKGK 678 Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF- 521 +K N K + + ++ + S I + ++ Sbjct: 679 NL-----FEKLTNSENKKDSQTTNLLKKWLNFSLNNSLPTLIECISLDTDFKNYLVTIGV 733 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHT 579 +E ID + F++ ++ L LI +L+ ++ V + T+H Sbjct: 734 NDEEIDYFENFVDVVNEYQKIDNK-LSGLIRQLKNIKNEEVFETKKRTPNDSVTLSTIHI 792 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN-------DDPGIPIWIPQSKSRNNIV 632 +KGLE VF+ D + + + + + + N + Sbjct: 793 SKGLEYKEVFVADLDTSFSKSGYTGEGLFTETFGLSLNVETIAQNFGLNNSRLTELNELY 852 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKKSNQRTWYDMVYDSFHN 691 +K +EE R LYV +TRA + L + S N +K+ ++ + + + Sbjct: 853 KLNSILIKLREREEEIRNLYVALTRAKNTLYLVSPSGIELNNEKARDKSLSQAILEDDNF 912 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + + + E E PL +E+ D ++ +++ Sbjct: 913 ETILNNLLSDYEEGFSFENEREAKFEAHEVIPLIQEQENGLDFDLADFYERFELKQQDNE 972 Query: 752 NE----------PYILNPSTIDTKGKTNLESLLSDNQ----------------TFNRGLI 785 P + S + + + + RG I Sbjct: 973 EIQENTIKHKVFPTKTSYSALKKINGESNSGFKKEKRGYLELTTLKSSTSTSKAILRGNI 1032 Query: 786 IHKLLQVIFTLPEHKRK-NFITSYCT------------KNAKLWPAKEYKNL-----LLS 827 +HKL + I + N + Y K ++ +E+ N+ + Sbjct: 1033 VHKLFEKIVNDVRSGVEINDVEVYLNNLKKTDSLIKNIKENRILTEEEFDNINNKDDIER 1092 Query: 828 ITRLLENPMMTTAMSCD-SYSEVSVS-----GKINCPKK---DIIISGRIDQIS-ISQQN 877 I+ + N +M +C +E++ + ++ D+I+ G +D IS Sbjct: 1093 ISNFINNELMNIISNCQFCQTEIAFTTAKKAKELYSESDSEIDVILQGVVDLFIKISDDE 1152 Query: 878 IFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I +YKT + + E + H QL IY++ + + Y K++ + K+ + Sbjct: 1153 AIIVDYKTDYVTSKTGEDILRERHKEQLRIYKEAVAEYYQLKNIKTYVYSYVLSKLIEV 1211 >gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1] gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1] Length = 799 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 118/803 (14%), Positives = 229/803 (28%), Gaps = 131/803 (16%) Query: 11 ESYELIYK--DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 + + + WP ++ NK + E + A+ + ++ Sbjct: 58 RRIAGLLRSQEAWPSQILAITFTNKAAAEMRERVAAIVGNAAEGMWISTFHSACVRILRR 117 Query: 69 LSSFF-LTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFK 121 + F ++ FT + ++ + K+ + + K+ + +++ F Sbjct: 118 EAEAFGFSKNFTIYDSADSKALLKRILKELDADMYGLTVSKAANRISGLKNELTDVDGFA 177 Query: 122 STLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 A+ + Y DF+DLI T L + I + Sbjct: 178 RDANLSDPAEKKFLEVFRRYTRGLSDANAFDFDDLIGQTVYLFR---AFPHIAATYQRRF 234 Query: 178 NHILIDEVQDTSLIQWEVIRSLT------------EDFFVGKNTHSSPRTLFAVGDEKQS 225 HIL+DE QDT+ Q+ +IR LT G +L VGD QS Sbjct: 235 KHILVDEYQDTNHAQYSLIRELTRPPAPEQFETSPGVLVQGSTNELEAASLTVVGDSDQS 294 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY+F GA+ + ++ +R + ++I L ++RST IL + V S + + Sbjct: 295 IYAFRGADIRNIVEFERDFPRS--------TVILLEQNYRSTQTILDAANAVISHNFDRK 346 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + +T Y Sbjct: 347 DKKLF---------------------------TTVGAGDKIVGFTGYSGHDE-------- 371 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A+ +A I M + KD+ V R T + + + Sbjct: 372 AQFVADEIQKMHDEG----------VAYKDVAVFYRTNSQTRALEEIF----IRAALPYR 417 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETE 464 + IKD + + D L+ ++ +P + Sbjct: 418 VLGGTKFYERAEIKDAFGYLIAVANPADPLALRRIMNTPKRGIGPATEAALQAWADDRGM 477 Query: 465 TVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 T+ + ++ + + + E++ + P + T +L + S Sbjct: 478 TLRDAMRNAGELGLGPKVTKAIVDLARLLDEVMAKVETAKPAEILTELLERSGYVRVLRS 537 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIM 575 + + +DE + T +N+ L + ++E+ + V +M Sbjct: 538 SLDPQDEARAENVDELIAVTKEFGKNNPDGTLIDFLTEVSLVAAAD--DLDDSSGTVSLM 595 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+HTAKGLE VFL + H+ P Sbjct: 596 TLHTAKGLEYDAVFLTGVEEDLLPHRMSANEPGGP------------------------- 630 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 E RL YVG+TRA +L + + + N + + + Sbjct: 631 ---------AEERRLFYVGITRARKRLFLSLAMTRAQFGEVNVAMPSRYLQEIPADLIEW 681 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 K+ ++ + P + + N + Sbjct: 682 KQSPGMSNPRGGTQSRALNARRGGGGGSWAGSLREAAAGGLPPAPPRAKTEWANAVTGTV 741 Query: 756 ILNPSTIDTKGKTNLESLLSDNQ 778 N G + D Sbjct: 742 RDNGDLTLAAGDRIRHTDFGDGT 764 >gi|317495222|ref|ZP_07953592.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424] gi|316914644|gb|EFV36120.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424] Length = 728 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 189/549 (34%), Gaps = 112/549 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +Y++ KKN VLDF+DL++ T L +K I + +I +DE QDT+ Sbjct: 168 VAEIYEYYQKYLKKNSVLDFDDLMLKTIVLFEKHPE---ILAIYQNKFEYIHVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +IQ+++I+ L+E + + VGD+ QSIYS+ GA ++ ++ + Sbjct: 225 VIQYKLIKMLSE----------VHKNICIVGDDDQSIYSWRGACSDNIINFEKDYE---- 270 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I L ++RS + IL + V + + + Sbjct: 271 ----DVEVIFLDQNYRSNSTILDAANAVIKNNTDRKDKA--------------------- 305 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW +++ + + + D + IA I ++ Sbjct: 306 LWS------ENKGGDKIIVYAATNDKDETDD--------IAKKILDLKAQG--------- 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + KDI +L R + + I I+DL+A I+ Sbjct: 343 -VDYKDIAILYRANYLSRSMENSCMAF----GIPYKLIGSLKFLQRQEIRDLLAYMNVIV 397 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF----QHV 484 ++ D+ S ++ P + KI +++E ++ G+SK H+ Sbjct: 398 NKNDEFSLRRIINVPKRGIGASSMAKIDNYAEQYGLSLFEALKNIDMIGVSKKITTNIHL 457 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + + E + S D I + + E ++ + Sbjct: 458 LTQLIEKYSQTEQYSIEDLIVGIYKDSGYESMLKESADAYAESRIENISELVSSAKQFSS 517 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + LI + + T + V + TVH AKGLE VVF++ +F Sbjct: 518 MN----DNLIDFISEMSLTSDADDENEDDSVVLSTVHAAKGLEYRVVFIMGLEENLFPS- 572 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 I +++ EE RL YV +TRA ++ Sbjct: 573 -----------------------------IRDAESSEDERNKMEEERRLAYVAITRAKEK 603 Query: 662 LIICKHSNT 670 L + + Sbjct: 604 LFMSYANRR 612 >gi|255531341|ref|YP_003091713.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366] gi|255344325|gb|ACU03651.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366] Length = 769 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 200/652 (30%), Gaps = 118/652 (18%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L + Y + K +DF+DL+ TN LLK + K Q+ ++++DE QDT Sbjct: 172 LIGVIYETYTKRCFKAGAMDFDDLLFKTNVLLKTHPD---VLNKYQQKFKYLMVDEYQDT 228 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +++ L + + + VGD+ QSIY+F GA + +L +R Sbjct: 229 NFSQYTIVKKLAAAY----------QNICVVGDDAQSIYAFRGANIQNILNFERDYP--- 275 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + +L ++RST +I+ V + + + +N + S Sbjct: 276 -----DLKVYKLEQNYRSTQNIVEVANSIIANNKNQLEKNVFS----------------- 313 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 D++ + + ++ D ++A I Sbjct: 314 ----------DNEAGDRIKVQRAFTD----NEEGKMVAEAIVQE-------------RSS 346 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + D +L R + + R L + +KDL+A R Sbjct: 347 KGYDYHDFAILYRTNAQSRAMEEALRKL----NVPYKIYGGLSFYQRKEVKDLIAYFRLT 402 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK----FQH 483 + D+ + ++ P + + KI T+++ I + Sbjct: 403 FNPADEEAIKRVINYPRRGLGDTTVEKIMVAADQHNITMWQVICNPQQYIPGRIANQLND 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN- 539 + A+ ++ I ++ + E + + E LN Sbjct: 463 FAVMVQSFAVEAKKLDAYETALYIAQHSGILKELHADQSEEGRGRHENIQELLNGIKEFG 522 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E SL + ++ K V +MT+H++KGLE VF+V + Sbjct: 523 EREDIEDRSLAIFMQDIALLTNDDKADDKNKD-TVSLMTIHSSKGLEFKNVFVVGLEENL 581 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +S EE RL YV +TR Sbjct: 582 FPSQMSLNS----------------------------------RSDLEEERRLFYVAVTR 607 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A +L + ++ + + ++ +K S + + E + Sbjct: 608 AEKKLTLTYSTSRYRWGTLTNCEPSRFIDEINARYLEIEVVKPAKSSLTENSFSDERRSW 667 Query: 718 HPENTPLEREETIK---QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + + + Q K + + P Sbjct: 668 TQQRDTFSKPKPASGGTGTVSTQAPRPKTTAMLPKAHVPTPGFTPDAASAFQ 719 >gi|81300977|ref|YP_401185.1| ATP-dependent DNA helicase Rep [Synechococcus elongatus PCC 7942] gi|81169858|gb|ABB58198.1| ATP-dependent DNA helicase, Rep family [Synechococcus elongatus PCC 7942] Length = 794 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 102/635 (16%), Positives = 203/635 (31%), Gaps = 103/635 (16%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y + N LDF+DL++ L ++ + + Q H+L+DE QD Sbjct: 204 RVIGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNE---QVLAYWHQRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+++IR LT + ++ + R++F VGD QSIYSF A+ ++ + Sbjct: 261 TNRTQYDLIRLLTTNGAETRDFDQWNHRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 320 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 R + + ++++L ++RST +IL +++ T Sbjct: 321 RLPDDDTR-TMVKLEENYRSTENILQAANELIRNNTERIDKVLRPTR------------- 366 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 + + + D + + A + I + Sbjct: 367 ---------------GSGEAIACYRADDEMAE-------AEYVVQQIRQL--------EQ 396 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + + D +L R + + + D +KD++A R Sbjct: 397 QHPELNWGDFAILYRTNAQSRAFEDSL----VRWNVPYTVIGGLRFYDRREVKDILAYLR 452 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479 I + D +S + ++ P + I ++ E ++ E +Q A Sbjct: 453 AIANPFDAVSLLRVVNVPKRGVGKTTIGRLVDAAQELNVPLWEILSDSETVQNLAGRSAK 512 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536 + A P + +L A + + L+E +N Sbjct: 513 GILEFANLVQHFQDQADELRPSELIRQLLEASGYIAELQRSGTDEDEDRRRNLEELVNAA 572 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 +++E+ + LI L + + +V +MT+H +KGLE PVVFLV Sbjct: 573 VQHEEENDD--PSLIGFLGTASLASDADNKEANQQVSLMTLHASKGLEFPVVFLVGLEQG 630 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F EE RL YVG+T Sbjct: 631 LFPS----------------------------------FRSLDDPRAVEEERRLCYVGIT 656 Query: 657 RASDQLIICKH-----SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 RA ++L + E ++ + + + + Sbjct: 657 RAQERLFLTHASARRLWGGGREPAIPSNFLSELPAELIVGHSPQTRRQTQANFKPPVTHE 716 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 S + + ++Q ++ +L Sbjct: 717 RRASLRDRVAANAAKVQQVQQPARHWQVGDRLQHR 751 >gi|124266478|ref|YP_001020482.1| DNA helicase/exodeoxyribonuclease V subunit A [Methylibium petroleiphilum PM1] gi|124259253|gb|ABM94247.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylibium petroleiphilum PM1] Length = 1086 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 158/931 (16%), Positives = 300/931 (32%), Gaps = 108/931 (11%) Query: 21 WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCIEERFSLLSSFFLTQKF 78 W S ++ G L+QA F T+ Sbjct: 248 WLAQPDIRSALSTLAVALGAAGGKKSRDAGSALEQALAGIEADPSAAFDAAWQALFTKTG 307 Query: 79 TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138 +K I +N+ + L+ + D+ ++ + L++ L A Y Sbjct: 308 ELRKQIDAPGLNEAADVLR--------RIAEAMDQQAAHRAHAR---MVRLSRVLLASYR 356 Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 + K+ + D DL LL ++S W++ ++D + H+LIDE QDTS +QW + + Sbjct: 357 QLKRDRGLADMADLEACAEHLLADAELSGWVQERLDARVRHLLIDEFQDTSPLQWRTLDA 416 Query: 199 LTEDFFVGKNTHSSPRTL--FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 + S R L F VGD KQSIY F A+P+ + + + Sbjct: 417 WLSGYAGAGGGSSGQRPLSVFIVGDPKQSIYRFRRADPRVFAQAR-----DFVVTALDGA 471 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 + + R+ +L V++ VF+ + + H + G V L V Sbjct: 472 HLACDHTRRNAPRVLAVLNAVFAHAQAGGRFDDFR----PHTTDVSEPPGAVWLLPAVPR 527 Query: 317 QHDSQCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 W + P+E I A ++A I+ ++ + Sbjct: 528 PEKGGPVVAAGGWRDSLTTPRTEPEEVLRRIEAEQVAVGITALLAEG---------GLAP 578 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 DI VL RKR L+ R + ++ L ++DL+AL + S Sbjct: 579 GDIQVLCRKRAPLALVAQALRE----RGVPHATPEQRELMAAPEVRDLVALLDALASPSH 634 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-EYIQKFANCGISKFQHVIKYIHELI 492 DLSF LKSP+F S+DD+ + + E + + A G + + Sbjct: 635 DLSFAQALKSPVFGASDDDLVALARAARAERLAWSEVLLRGAGAGRAALDRARALWPGWL 694 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 A PHD I+ + R+++ + + +D L +L + +++ Sbjct: 695 AAAAALPPHDLLDRIVDEGEVRERYAAVVPPAGRLLALAAIDALLAQSLLLDGARHATPY 754 Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 + + + + V+++T+H AKGLE+ VF++DT + + + Sbjct: 755 NFVR--ALRRRRVLLPPQSAADAVQLLTIHGAKGLEARAVFVIDTMPEAPKAETATLLID 812 Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 P+ P ++ + L+ ++ E LYV MTRA ++L+ Sbjct: 813 WPADAAHPHCCAFVASESRCPPSLRALMAAEQEGRAREELNALYVAMTRARERLVFSAT- 871 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + W + + Sbjct: 872 -----------------------------TPHRAAPGPSAWQRLAEAGADAVPPSADAGG 902 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788 T + L P EP + DT + G +H+ Sbjct: 903 TAGSAGSAESPVVLLALPRVRLAAEPSDPVAADADT-------------EAAQLGRAVHR 949 Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 +L+ + + P + + +L + ++ Sbjct: 950 VLEWLPADAALDAAAAAAAI----EFALPPDAAPRVAALVRAVLGSAACARFFDPEALHW 1005 Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQL 904 I + RID++ ++ +YK Q + QL Sbjct: 1006 SGNEVAIAWRGAAL----RIDRLVALHTPAGPEWWVLDYK-----LQHAPQAIEAYREQL 1056 Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + Y + ++ +S+ I + +V + Sbjct: 1057 AGYREAVQSLQGGESVRAAFI-TAAGEVIEL 1086 >gi|21223175|ref|NP_628954.1| ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)] gi|8218198|emb|CAB92660.1| putative ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)] Length = 831 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 120/728 (16%), Positives = 226/728 (31%), Gaps = 134/728 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D F+ T Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 233 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 234 ---LAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287 Query: 187 DTSLIQWEVIRSLTEDFFVG-----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DT+ Q+ ++R L P L VGD QSIY+F GA + +L+ + Sbjct: 288 DTNHAQYALVRELVGVPSEHPVDVPPEAEVPPAELCVVGDADQSIYAFRGATIRNILQFE 347 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I L ++RST IL+ + V E+ + + Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 386 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW +Q + Q + + A+ +A I + Sbjct: 387 --------LW-------TNQGSGAQITGYVADTEHDE-------AQFVADEIDRLTDAGE 424 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +A D+ V R + + + + + ++D+ Sbjct: 425 ---------AKAGDVAVFYRTNAQSRVFEEVF----IRTGLPYKVVGGVRFYERKEVRDV 471 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480 +A R + + ED + +L P + I + E + + +++ Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFPQALRRVDEAYGMA 531 Query: 481 FQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 + + +L I + + P IL + + + I+ L Sbjct: 532 ARSANAVKRFNTLMEDLRTIVESGAGPATVLEAILERTGYLAELQASTDPQDETRIENLQ 591 Query: 531 EFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLE 584 E L EQ L + + ++ + + + + V +MT+HTAKGLE Sbjct: 592 ELAAVALEFEQERAEGEEAGTLADFLEKVALVADSDQIPDEEDGDGVVTLMTLHTAKGLE 651 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVFL VF H + Sbjct: 652 FPVVFLTGMEDGVFPHMRALG----------------------------------QAKEL 677 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 EE RL YVG+TRA ++L + + + S + + + + K+ Sbjct: 678 EEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPSRFLEEIPAPHLEWKRTGANGPA 737 Query: 705 NKDEWIAY 712 Sbjct: 738 PSAPVSGV 745 >gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1] gi|119958641|gb|ABM15646.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1] Length = 775 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 107/633 (16%), Positives = 183/633 (28%), Gaps = 128/633 (20%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + A Y+ + LDF+DLI T +L+ I + HIL+DE Sbjct: 181 LARIIASVYAEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHILVDEY 237 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+ ++R L P L VGD QSIY+F GA + + +R Sbjct: 238 QDTNHAQYVLVRELVG---TETVDGVPPAELCVVGDADQSIYAFRGATIRNIEDFERDFP 294 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I L ++RST IL + V + + Sbjct: 295 N--------ATTILLEQNYRSTQTILNAANSVIARNVGRRDKR----------------- 329 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + + + AR +A I + Sbjct: 330 ----LW-------TDAGEGELIVGYVADNEHDE-------ARFVAQEIDALSDAVAD--- 368 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 D+ V R + I + I + I+D++A Sbjct: 369 -----FSYNDVAVFYRTNNSSRAIEEVF----IRAGIPYKVVGGVRFYERREIRDIVAYL 419 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA---------NC 476 R + + D +S +L +P + + T + A Sbjct: 420 RVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAETTGANFNDALAAAAEGKVPMLNTR 479 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 + ++ + EL D +L R + + + +D L+E + Sbjct: 480 SEKAIKGFVELLDELRGGLDGE-LGDLVETVLDRTGYRAELEASSDPQDLARLDNLNELV 538 Query: 534 NFTLRN------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VR 573 + + L + LE+ H V Sbjct: 539 SVAHEFSIDLANAKALASEEGAEPQDEDVPDTGVLAAFLERVSLVADADDIPEHGAGVVT 598 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE PVVF+ +F H Sbjct: 599 MMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDPG------------------------- 633 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 E RL YVG+TRA +L + + S+ + + + Sbjct: 634 ---------ELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELI 684 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++ + +S + A + P T Sbjct: 685 DWRRTEQPSSFSAPVGNAGRYGAPRPSPTRPAA 717 >gi|332168825|gb|AEE18080.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5] Length = 795 Score = 294 bits (751), Expect = 7e-77, Method: Composition-based stats. Identities = 110/713 (15%), Positives = 225/713 (31%), Gaps = 137/713 (19%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K ++ ++ ++ I +R N ++ ++ + + A Y + K +DF+ Sbjct: 157 KYKQIQNRISSFKNSLITVRAYQNDPELVEADAMAKRPRMGEIYAEYVDRCFKAGAMDFD 216 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K +IL+DE QDT+ Q+ ++++L++ F Sbjct: 217 DLLLRTNELLNRFPE---VLNKYQNRFKYILVDEYQDTNHSQYLIVKALSDKF------- 266 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIY+F GA +L ++ + ++ L ++RS+ I Sbjct: 267 ---QNICVVGDDSQSIYAFRGANINNILNFQKDYEN--------VAMYRLEQNYRSSKVI 315 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + V + + + + Sbjct: 316 VEAANSVIEKNKTRLDKTVWTANP---------------------------DGGEIIVHR 348 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 S D R +A +I F N + D +L R + + Sbjct: 349 SPTDGEEG--------RYVASSI---------FENRMNHQLMNGDFAILYRTNAQSRAME 391 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD++ R +++ +D+ + ++ P Sbjct: 392 DALR----KRDIPYRIYGGLSFYQRKEIKDVLGYLRVLINPKDEEALKRVINYPARGIGG 447 Query: 451 DDIFKICTQRHE-TETVYEYIQKFAN---------CGISKFQHVIKYIHELIHIAQFCSP 500 I K+ +++E ++K +K ++ + I + + Sbjct: 448 TTIDKLTVAAKHYGRSMFEVMEKIEQLGPSMNINRGTQTKLKNFVTMIKSFQILNEQSDA 507 Query: 501 HDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--EQNSYSSLQE-LISEL 554 + Q+ E I+ ++E LN EQ + L L Sbjct: 508 FTVAEKVAKKTGLLQELKKDGTPEGVARIENIEELLNGMRDFVEEQKELADTTGSLAEFL 567 Query: 555 EQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 E + + + V +MT+H AKGLE P V++V +F Sbjct: 568 EDVALATSMDNDTGDDDRVALMTIHLAKGLEFPFVYIVGMEEDLFPSGMS---------- 617 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 +S EE RL YV +TRA Q + + Sbjct: 618 ------------------------MSTRSELEEERRLFYVALTRAEKQAYLTYTESRYRW 653 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K + + + + N I + ++ Sbjct: 654 GKLVDAEPSRFIEEIDDKYLDYQTPMMRNRYKSLMDIDEYGEVD---------KSKLRLK 704 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786 P ++ +P ++ + + + P + E + S G ++ Sbjct: 705 KPVSGTPPRVGNPSQDQLRKLRKIRP-------TSGDEPVSSLAGALEAGTVV 750 >gi|16803799|ref|NP_465284.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e] gi|16411213|emb|CAC99837.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e] Length = 731 Score = 294 bits (751), Expect = 7e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 241 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 283 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 359 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 415 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 416 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 475 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 535 Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 586 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 621 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELGNE 648 >gi|227523030|ref|ZP_03953079.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290] gi|227089848|gb|EEI25160.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290] Length = 743 Score = 294 bits (751), Expect = 7e-77, Method: Composition-based stats. Identities = 110/694 (15%), Positives = 217/694 (31%), Gaps = 141/694 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + V N + ++ L S Sbjct: 30 GAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLDESGDDVWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQEINK-----KSPDLKEKLKKSQDE 106 F L F + Q+ ++ + + + K D + L + Sbjct: 90 FHALCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNA 149 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + ++ + + Y+ ++N LDF+DLI+ T +L D Sbjct: 150 KNDLLT--PKAFKAQADSDFDQIVADVYERYQAELRQNESLDFDDLIMTTIELF---DQF 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + ++I +DE QDT+ Q+ ++ +L + + + VGD QSI Sbjct: 205 SDVLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAK----------KSKNICVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + +L K + L ++RST +L + V + N Sbjct: 255 YGWRGANMQNILDFKEDYP--------DAHVTLLEQNYRSTKTVLDAANAVIAHNLNRAD 306 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ S+ + + + A Sbjct: 307 KN---------------------LW-------TENEQGEKISYY-------RGQTENDEA 331 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 R + I +G +L R + +I I Sbjct: 332 RYVVAKIQEEMGK---------PKRNYGSFAILYRTNAQSRVIEETL----LKANIPYTM 378 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 D I+D +A + + D +SF ++ P E + K+ + Sbjct: 379 VGGHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKRGIGETSLEKLRTFANDHGWS 438 Query: 466 VYEYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + E + + + I ++ + + IL S Sbjct: 439 LLEASKNIDLANEISSRAKNSISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKS 498 Query: 520 RFGNEVI---DVLDEFLNFTLRNEQNSY-----SSLQELISELEQYPPTIKRAHSANHNE 571 + + L+EF++ T + +Q++ +L +S+L +E Sbjct: 499 SKSLQAQTRLENLEEFISVTQKYDQDNPDQVGQDNLVNFLSDLALVSDQD--DLDEETSE 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVF++ +F Sbjct: 557 VTLMTMHAAKGLEFPVVFIMGMEEGLFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +S +E RL YVG+TRA ++L + Sbjct: 587 ----RAAQDESELQEERRLAYVGITRAKEKLYLT 616 >gi|47092912|ref|ZP_00230694.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b H7858] gi|254825996|ref|ZP_05230997.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194] gi|254932795|ref|ZP_05266154.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262] gi|255521959|ref|ZP_05389196.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-175] gi|47018738|gb|EAL09489.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b H7858] gi|293584348|gb|EFF96380.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262] gi|293595235|gb|EFG02996.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194] gi|328466511|gb|EGF37654.1| ATP-dependent DNA helicase [Listeria monocytogenes 1816] Length = 733 Score = 294 bits (751), Expect = 7e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537 Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|163756230|ref|ZP_02163345.1| ATP-dependent DNA helicase II [Kordia algicida OT-1] gi|161323842|gb|EDP95176.1| ATP-dependent DNA helicase II [Kordia algicida OT-1] Length = 778 Score = 294 bits (751), Expect = 7e-77, Method: Composition-based stats. Identities = 118/717 (16%), Positives = 236/717 (32%), Gaps = 133/717 (18%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K ++ ++ ++ I +R FN + ++ + + Y + K +DF+ Sbjct: 140 KYKQVRSRISSFKNSLITVRAYFNNADLVEADAMAKRPRMGEIYKEYVDRCFKAGAMDFD 199 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K +IL+DE QDT+ Q+ ++++L + F Sbjct: 200 DLLLRTNELLNRFPD---VLAKYQNRFRYILVDEYQDTNHSQYLIVKALADRF------- 249 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIY+F GA +L ++ ++ L ++RST +I Sbjct: 250 ---QNICVVGDDSQSIYAFRGANINNILNFQQDYDN--------VAMYRLEQNYRSTKNI 298 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + V + + G +++ V + Sbjct: 299 VEAANSVIEHNKTRLDKVVWTAN---------DPGGKIKVNRSVTDGEEG---------- 339 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 R +A +IF + + D +L R + + Sbjct: 340 ----------------RFVA---------GSIFETKMREQLTNGDFAILYRTNAQSRAME 374 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD++A R +++ +D+ S ++ P + Sbjct: 375 DALR----KRDIPYRIYGGLSFYQRKEIKDVLAYLRLVVNPKDEESLKRVINYPARGIGQ 430 Query: 451 DDIFKICTQRHE-TETVYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHD 502 I K+ +++E ++ + + K ++ + I + + + Sbjct: 431 TTIDKLVVAAKHYGRSMFEVMENISKIDLKINKGTKTKLENFVTMIRSFQVMNEGADAFE 490 Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISE 553 I Q+ E I+ ++E LN + +L E + + Sbjct: 491 LTKHITKKTGLVQELKKDGTPEGIARIENIEELLNGIKDFVEGQVEVADATGALAEFLED 550 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + T + + V +MT+H AKGLE P V++V +F Sbjct: 551 VALA--TDMDNDKGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFPSGMSMNT------- 601 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK----HSN 669 +S EE RL YV +TRA Q + + Sbjct: 602 ---------------------------RSELEEERRLFYVALTRAEKQAYLTYTQSRYRW 634 Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729 R ++ + + I+ D + + S + R Sbjct: 635 GKLVDAEPSRFIEEIDDKYLDYITPIDNYRFKPLIDNDIFGEVDKSKLRLQKPKSGRPPV 694 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786 + EQ + P + + P + S +D K + L ++ F RG I+ Sbjct: 695 VGSPTPEQIRKLRKIKPEASQSSPP---SGSLLDEKL---VPGTLVEHTRFGRGEIL 745 >gi|313890094|ref|ZP_07823729.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN 20026] gi|313121455|gb|EFR44559.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN 20026] Length = 759 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 122/766 (15%), Positives = 245/766 (31%), Gaps = 140/766 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + ++ N + ++A L A+Q + Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKCINPWNILAITFTNKAAHEMRERALALNPATQ-DTLIAT 86 Query: 66 FSLLSSFFLTQK---------------FTPQK--NIITQEINKKSPDLKEKLKKSQDEFI 108 F + L ++ + I + +N S E+ Sbjct: 87 FHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKSLNIDSKKWSER--SILATIS 144 Query: 109 KIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ K +++ + + + Y+E +++ +DF+DLI+ T L + Sbjct: 145 NAKNDLLDEKAYEAQASDIYTQIVARSYKAYQEELRRSESMDFDDLIMMTLRLFDQNPD- 203 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + Q +I +DE QDT+ Q+++++ L F + + VGD QSI Sbjct: 204 --VLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSI 251 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L ++ + ++ L ++RST IL + V +N + Sbjct: 252 YGWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKTILQAANDVIKHNQNRRD 303 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + + + D + A Sbjct: 304 KK---------------------LW-------TQNSSGEPIVYYRANDEREE-------A 328 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 IA +S+M +R KD VL R + I I Sbjct: 329 VFIASMVSSM---------CMERGKSFKDFAVLYRTNAQSRTIEEAF----LKSNIPYTM 375 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 I+D+++ + + D+LSF ++ P + K+ + + Sbjct: 376 VGGTKFYSRKEIRDVISYLNIVANPSDNLSFERIVNEPKRGVGPGTLEKLRVFAYDQGMS 435 Query: 466 VYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + E + + +L + + D +L Q + Sbjct: 436 LLEASSHLFLSPLKGKAAQAIMDLASLLSDLRNRLDQLTITDLAQELLDRSGYLQALTIQ 495 Query: 521 FGNE---VIDVLDEFLNFTLRNEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571 E I+ ++EFL+ T ++ N + L +L L + A+ E Sbjct: 496 NTLESQARIENIEEFLSVTKNFDEASATSNEENGLDKLGRFLNDLALIADTDDSKADVAE 555 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE P+VFL+ VF + Sbjct: 556 VTLMTLHAAKGLEFPIVFLIGMEEGVFPLSRSSEEQSELEEERR---------------- 599 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 L YVG+TRA + L + + + K+N + + Sbjct: 600 ------------------LAYVGITRAEEVLFLTNANTRTLFGKTNYNQPTRFLREISDE 641 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737 K + S + + ++ TH + L + ++ + Sbjct: 642 LLTYKGLARPTSTSFGVKMTHQNQTHFAQGMSLSQAIQGRKSQAQP 687 >gi|229829264|ref|ZP_04455333.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM 14600] gi|229792427|gb|EEP28541.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM 14600] Length = 753 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 128/773 (16%), Positives = 236/773 (30%), Gaps = 142/773 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ + ++ L Sbjct: 28 GAGSGKTRVLTHRAAYLIDEKGVAPYQIMAITFTNKAAEEMRERINKLVSFGGEAVWVAT 87 Query: 66 FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111 F S F QK++I + K D+ K+ K + I Sbjct: 88 FHSSCVKILRRFADRVGYDSRFTIYDGDDQKSLI--KDVCKYLDIDTKIHKERSFLSVIS 145 Query: 112 DRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 + L A + Y+ K N LDF+DLI+ T +LL+ Sbjct: 146 HAKENLVGPE---TFLQEAAGDFNRTRQGQVYREYQARLKANNALDFDDLIMKTVELLRG 202 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + +R + ++I++DE QDT+ Q+E++R L + + R L VGD+ Sbjct: 203 D---STVREYYQRRFHYIMVDEYQDTNTAQFELVRLLADGY----------RNLCVVGDD 249 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY F GA +L + +I+L ++RST +ILT + V + Sbjct: 250 DQSIYRFRGANIYNILHFEEHYP--------DAKVIKLEQNYRSTQNILTAANGVIANNT 301 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + S LW + ++ FDS +E Sbjct: 302 GRKDKS---------------------LW--------TDSGEGEKVLLKQFDSAYEE--- 329 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A +A +I++++ +D +L R + L+ I Sbjct: 330 ---AEFVADSIASLVRRGE---------YSYRDCAILYRTNAQSRLLEEKLVAD----NI 373 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 +KDL++ + I + +DDL+ +L P + ++ Sbjct: 374 PYKIFGGVNFYARREVKDLVSYLKVIDNAQDDLAVRRVLNVPRRGIGATSMDRVQAYANS 433 Query: 462 ETETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 Y+ + + +K I I + I+ + Sbjct: 434 NGLDFYQAMTRAGQIQGLARAAAKILAFISLIERARQVLAQEGISKSLLYIIDQTGYVEG 493 Query: 517 FISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEV 572 + +E D +DE +N + EQ SL + + ++ + + V Sbjct: 494 LKAEGTDEARARIDNIDELINKVILYEQETEEPSLNDFLEQVSLVADID--QLEESADYV 551 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H+AKGLE P V+LV +F Sbjct: 552 SLMTLHSAKGLEFPNVYLVGMEDGLFPS-------------------------------Y 580 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY--DSFH 690 + EE RL YVG+TRA + L + + + V + Sbjct: 581 MSITAENADEEIEEERRLAYVGITRAKEHLTVTAARMRMVRGEMQYASLSRFVEEIPAEA 640 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 D + ++ + + + K Sbjct: 641 IDGNLPDRNRADAFAWENAEGPCYGSVAYARGNAAEIRKKTSAQKYAAAAKNF 693 >gi|46907989|ref|YP_014378.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b F2365] gi|46881259|gb|AAT04555.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes serotype 4b str. F2365] Length = 733 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKVSKDLVAFHDLIRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537 Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|224499522|ref|ZP_03667871.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes Finland 1988] gi|224503315|ref|ZP_03671622.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-561] Length = 733 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537 Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|190571383|ref|YP_001975741.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018782|ref|ZP_03334590.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357655|emb|CAQ55099.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995733|gb|EEB56373.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 637 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 102/557 (18%), Positives = 187/557 (33%), Gaps = 121/557 (21%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + Y+E K +DF DL++ L K + + ++++D Sbjct: 162 RPVYVTALKVYYQYQERLKFLNSVDFGDLLLYNIQLFNK---KTEVLSYYQNKFKYVMVD 218 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ IQ+ ++ L ++ + VGD+ QSIYS+ GAE + +L+ Sbjct: 219 EYQDTNAIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVENILKFSDD 268 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + ++L ++RST+ I+ V + + Sbjct: 269 FKN--------AKTVKLECNYRSTSHIIATASYVINHNKTRLEKK--------------- 305 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + ++ + +D + AR I+ I + Sbjct: 306 ------LW-------TTNIEGEKVNLIKLWDGKAE-------ARFISEQILKL------- 338 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + DI VLVR T ++ Y I + ++D++A Sbjct: 339 -----NKYRFSDIAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDIIA 389 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANC 476 R + + DDL+F ++ P + + KI T + + +E + + Sbjct: 390 YLRLVTNNNDDLAFERIVNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSDQVTER 449 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534 + I I H+F ++ + + G I+ + E ++ Sbjct: 450 IKLSLNDFLNKIKAWEEIVSVKPLHEFVKIVANQSGYMEMLENEGVTGLARIENVKELIS 509 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + I+ LE ++ + + + V +MT+H AKGLE P VFL Sbjct: 510 SLKNFDST--------ITFLEHISLVMEVDNMNSDDTVYVMTLHAAKGLEFPCVFLPGWE 561 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H+ + EE RL YVG Sbjct: 562 EGLFPHQRS--------------------------------FEDKSGKALEEERRLAYVG 589 Query: 655 MTRASDQLIICKHSNTS 671 +TRA ++LII Sbjct: 590 ITRAKERLIISCADRRE 606 >gi|56751936|ref|YP_172637.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301] gi|56686895|dbj|BAD80117.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301] Length = 794 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 103/626 (16%), Positives = 195/626 (31%), Gaps = 98/626 (15%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y + N LDF+DL++ L ++ + + Q H+L+DE QD Sbjct: 204 RVIGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNE---QVLAYWHQRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+++IR LT + ++ + R++F VGD QSIYSF A+ ++ + Sbjct: 261 TNRTQYDLIRLLTTNGAETRDFDPWNHRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 320 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 R + + ++++L ++RST +IL +++ T Sbjct: 321 RLPDDDTR-TMVKLEENYRSTENILQAANELIRNNTERIDKVLRPTR------------- 366 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 + + + D + + A + I + Sbjct: 367 ---------------GSGEAIACYRADDEMAE-------AEYVVQQIRQL--------EQ 396 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + + D +L R + + D +KD++A R Sbjct: 397 QHPELNWGDFAILYRTNAQPRAFEDSL----VRWNVPYTVIGGLRFYDRREVKDILAYLR 452 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479 I + D +S + ++ P + I ++ E ++ E +Q A Sbjct: 453 AIANPFDAVSLLRVVNVPKRGVGKTTIGRLVDAAQELNVPLWEILSDSETVQNLAGRSAK 512 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFT 536 + A P + +L A + + L+E +N Sbjct: 513 GILEFANLVQHFQDQADELRPSELIRQLLEASGYIAELQRSGTGEDEDRRRNLEELVNAA 572 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 +++E+ + LI L + + +V +MT+H +KGLE PVVFLV Sbjct: 573 VQHEEENDD--PSLIGFLGTASLASDADNKEANQQVSLMTLHASKGLEFPVVFLVGLEQG 630 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F EE RL YVG+T Sbjct: 631 LFPS----------------------------------FRSLDDPRAVEEERRLCYVGIT 656 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA ++L + S + + V T + + Sbjct: 657 RAQERLFLTHASARRLWGGGREPAISSNFLSELPAELIVGHSPQTRRQTQANFKPPVTHE 716 Query: 717 HHPENTPLEREETIKQLMDEQKIPKK 742 K +Q Sbjct: 717 RRASLRDRVAANAAKVQQVQQPARHW 742 >gi|313123176|ref|YP_004033435.1| ATP-dependent DNA helicase pcra [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279739|gb|ADQ60458.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 753 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 122/767 (15%), Positives = 239/767 (31%), Gaps = 137/767 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + +V+ N + ++ L Sbjct: 30 GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89 Query: 66 FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110 F L L + + Q ++ + + + D K+ L + + Sbjct: 90 FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++R T K ++++ + + Y+ + +++ +LDF+DLI+ T L K S Sbjct: 150 KNRLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 Q+ ++L+DE QDT+ Q+E+ R L + + + VGD QSIY Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + + ++L ++RST IL + V EN + Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + + R Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + + + +D VL R + + + Sbjct: 334 VLAKIKEEVDQ---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D IKD+MA + + + D +SF ++ P + K+ +Y Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTSKLAAFADEMGGGIY 440 Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E I+ ++ K + I AQ + + IL + Sbjct: 441 EAIRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500 Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571 ++ L EF T R + + L L + + + + + Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 IK + EE RL YVG+TRA ++L + + Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNPQSRFI--GEIK 646 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 DE + + T + ++ + ++ + + Sbjct: 647 DEDLDIVASTAPKSSTSFLDLDRLPFAEKSQAKAAQPAKIHRASKAA 693 >gi|293557128|ref|ZP_06675682.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039] gi|291600697|gb|EFF30995.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039] Length = 745 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 110/663 (16%), Positives = 211/663 (31%), Gaps = 121/663 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 +A A Y++ + N +DF+DLI+NT L ++ S + ++I +DE QD Sbjct: 170 EIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS---LTYYQNKFHYIHVDEYQD 226 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++ L F R L VGD QSIY + GA+ + +L ++ Sbjct: 227 TNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYGWRGADMQNILDFEKDYP-- 274 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++I L ++RST +IL+ ++V N + + Sbjct: 275 ------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN------------------- 309 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + + R I + I + Sbjct: 310 --LW-------TENKEGNKITYYRADNERDET-------RFIVDRMQEEIRNNHR----- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D +L R + ++ I D IKD++A Sbjct: 349 ----NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVGGHKFYDRKEIKDILAYLNV 400 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGI-----SKF 481 + + +D +SF ++ SP I K+ + E + E Q I + Sbjct: 401 LANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLLEAAQNVDLANIGGKAGQQL 460 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT-- 536 + I E+ + + + + +L + + E + L+EFL T Sbjct: 461 GAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNTLEAQARIENLEEFLTVTQE 520 Query: 537 --LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + EQ + +L + + + ++V +MT+H AKGLE PVVF Sbjct: 521 FDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDASQVTLMTLHAAKGLEFPVVF 580 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF Sbjct: 581 LIGLEEGVFPLSRALMEESELEEERRL--------------------------------- 607 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 YVG+TRA + L + + + ++ V + ++ ++ T Sbjct: 608 -AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQELLEIEGMRPTPKKTPVFA 666 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 ++ T + ++ P K + ++ ++ D + Sbjct: 667 KKTAAYSYKQPETAVVSSKSATGGEKNSWKPGDKVKHKKWGLGTVVRVSGTSKDLELDVA 726 Query: 770 LES 772 S Sbjct: 727 FPS 729 >gi|121605093|ref|YP_982422.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120594062|gb|ABM37501.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polaromonas naphthalenivorans CJ2] Length = 1103 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 150/905 (16%), Positives = 305/905 (33%), Gaps = 94/905 (10%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99 P+ K L+QA Q FS L LT K TP+K + + + Sbjct: 283 RASAPSFSAKGVELEQALGAQDRPGIFSAL----LTDKGTPRK-FGDKIVG------IDT 331 Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159 ++++Q+ ++++ ++ + L++ L A Y + K+++ +D D+ + Sbjct: 332 VRQAQELVLRVQAACQQHEAWLHQQRMARLSRLLIAQYNQLKREHGWVDMNDVERAALVM 391 Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 L ++ W++ ++D I H++IDE QDT+ +QW+ + + + G + ++F V Sbjct: 392 LGDPVLAGWVQERLDARIKHLMIDEFQDTNPLQWQALSA----WLSGYGGAGAAPSVFLV 447 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD KQSIY F AEP+ + G ++ + R+ ++ V+ V Sbjct: 448 GDPKQSIYRFRRAEPQVFRAAQA-----FVVEGLGGDLLSCDHTRRNALAVIDTVNAVMG 502 Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 G T + ++ + D+ S LP+E Sbjct: 503 HARTVDGYDGFREHTTDSAKAGATGCLPAISRQREGADADTSPEAGWRDSLSTPRELPEE 562 Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 + ++ AR+ A IS + T ++ D++VL RKR + R L Sbjct: 563 TLRTLEARQAAAWISRQLATG----------LKPSDVMVLSRKRAGLLPLQEALRALHIA 612 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 +I ++ L D + D++AL ++S + DLS L+SPLF + + ++ Sbjct: 613 AQI----GEKTDLIDCCEVLDVVALLDVLVSPQHDLSLARALRSPLFGLLDASLVQLALL 668 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + E + + + + + ++ ++ PHD + +F + Sbjct: 669 QKELKLPWSELLQKTELLAPELHALVPFLARWKGWLDSLPPHDALQKMYDDGDVLARFAA 728 Query: 520 RFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 L L L + Y++ LI L+ + N VR++ Sbjct: 729 AAPAAQRPAVLANLRALLGVALGRDGGRYATPYGLIRALKAGGLLA--PVAVNDAAVRLL 786 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE+ V L+DT + + + + P +P +++ + Sbjct: 787 TIHGAKGLEAEAVLLLDTDTAPRNADSMGVLVDWPGEATEPRKFVFLVSEARPPACAQEA 846 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + + + + E LYV MTRA L I ++ +W+ + + Sbjct: 847 LAAEQAARKREELNALYVAMTRARHTLAISSIEPH----RATIDSWWQRLQGQVPPLDAP 902 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 P E Sbjct: 903 APPDSLGEKADGAGQEGAAGFPAPAAEVFYLPE--------------------------- 935 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 L S+ D G +H+LL+ + Sbjct: 936 -LPAFEPPAPEPAAEGSVAEDPANARVGKAMHRLLEWGGRSSAEHVGAVAREF------R 988 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-- 873 + + +L+ A S ++ + + + + D++ Sbjct: 989 LNPAQAQEACALAQCILKGE-GAWAWSNEAVAWHGDEIDLVYQGLPLRL----DRLVRRK 1043 Query: 874 ---SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930 + ++ +YK+ + I + IY ++ YP ++ + Sbjct: 1044 DAGFEGQWWVLDYKSAPEPELQPALITK-----MRIYRAAVQRIYPRATVKAAFL-TGRG 1097 Query: 931 KVFII 935 V + Sbjct: 1098 TVVEL 1102 >gi|288927546|ref|ZP_06421393.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str. F0108] gi|288330380|gb|EFC68964.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str. F0108] Length = 823 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 108/670 (16%), Positives = 211/670 (31%), Gaps = 126/670 (18%) Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 N M + T L+ + A Y + + +DF+DL++ T L + + +R + Sbjct: 160 NAELMLRDTREHLSAVHKVYATYMQRCRLANAMDFDDLLVLTYRLFAEHED---VRKEYA 216 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++L+DE QDT+ +Q ++ LT++ R + VGD+ QSIY F GA+ Sbjct: 217 GRFQYVLVDEYQDTNHVQQLIVTLLTKE----------HRRICVVGDDAQSIYGFRGADI 266 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 +L ++ + + +L ++RST +I+ + + S + Sbjct: 267 DNILDFQQQFPE--------ARLFKLEQNYRSTQNIVKAANSLISHNQ----------RQ 308 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 I+ G + + V S + A + I Sbjct: 309 IKKDVFSENDAGEKLMLKPVYSDKE-------------------------EALVVCNDIK 343 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 ++ + D +L R + R I Sbjct: 344 RIMNDEQGA---------YSDFAILYRTNSQSRSFEEELR----RQSIPYRIYGGLSFYQ 390 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF 473 IKD++A R +++ +D+ +F ++ P + K+ + + +E + Sbjct: 391 RKEIKDIIAYFRLVMNVDDEEAFKRIVNYPARGIGNTRLAKVTMAAQQNGVSCWEILSNP 450 Query: 474 ANCG-------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-- 524 A+ +K Q ++ + ++ I+ + + + Sbjct: 451 AHYQLDVNKGTWTKLQKFRDMVNTFVAELATLDAYELGMKIIKESGIQADLYATSDADSL 510 Query: 525 -VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVH 578 + L EF+ + L L++ + V +MTVH Sbjct: 511 TRQENLQEFVGGLREFVDIRREEGNEGEVFLNDYLQEVSLLSDLDSEGDDESRVVLMTVH 570 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P VF+V +F Sbjct: 571 SAKGLEFPTVFVVGLEENIFPSPRSTDSP------------------------------- 599 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH-------N 691 EE RLLYV +TRA I+ N + T + D Sbjct: 600 ---RQLEEERRLLYVAITRAERHCILTCAKNRYRFGRMEFDTPSRFIRDIDPSLLNVQNP 656 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 K +L S+ DE + ++ ER + ++ + + + + + Sbjct: 657 MADFSKPRLERSLLSDELPSARYNGGRSARESGERRFDNPRFLNSRPVASQFMADPIPNP 716 Query: 752 NEPYILNPST 761 P P+ Sbjct: 717 ARPRKPEPAV 726 >gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS] gi|126237075|gb|ABO00476.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS] Length = 784 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 103/614 (16%), Positives = 188/614 (30%), Gaps = 127/614 (20%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + A Y+ + LDF+DLI T +L++ I + HIL+DE Sbjct: 184 LARIIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFP---QIAQYYRRRFRHILVDEY 240 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPR-TLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ Q+ ++R L + L VGD QSIY+F GA + + +R Sbjct: 241 QDTNHAQYVLVRELAGHGAHDTDDDGVAPAELCVVGDADQSIYAFRGATIRNIEDFERDY 300 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + I L ++RST IL + V + + Sbjct: 301 PN--------ATTILLEQNYRSTQTILNAANSVIARNAGRREKR---------------- 336 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW + + + + AR +A I + Sbjct: 337 -----LW-------TDSGHGELIVGYVADNEHDE-------ARFVAQEIDRLADDGH--- 374 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 D V R + + + I + I+D++A Sbjct: 375 -------SYNDFAVFYRTNNSSRALEEVF----IRAGIPYKVVGGVRFYERREIRDIVAY 423 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF-- 481 R + + D +S +L +P + + + + + +Q A + Sbjct: 424 LRVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGASFNDALQAAAEGKVPMLNT 483 Query: 482 ------QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 ++ + +L + +L R + + + +D L+E Sbjct: 484 RSEKCIASFVQMLDDLRGRLGDE-LGELVEAVLDRTGYRAELEASNDPQDLARLDNLNEL 542 Query: 533 LNFTLRN--EQNSYSSLQE---------------LISELEQYPPTIKRAHSANHNE--VR 573 ++ ++ + ++L E L LE+ H V Sbjct: 543 VSVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHGSGVVT 602 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE PVVF+ +F H Sbjct: 603 MMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDP-------------------------- 636 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA +L + + S+ + + + Sbjct: 637 --------NELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELI 688 Query: 694 RVKKIKLTNSINKD 707 ++ T S + Sbjct: 689 DWRRTDPTPSFSAP 702 >gi|254829488|ref|ZP_05234175.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165] gi|284802203|ref|YP_003414068.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578] gi|284995345|ref|YP_003417113.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923] gi|258601903|gb|EEW15228.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165] gi|284057765|gb|ADB68706.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578] gi|284060812|gb|ADB71751.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923] Length = 733 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLVAFLTD 537 Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|257126152|ref|YP_003164266.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b] gi|257050091|gb|ACV39275.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b] Length = 735 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 116/711 (16%), Positives = 229/711 (32%), Gaps = 140/711 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ + Y+ + +S +N + ++A L + Sbjct: 28 GAGSGKTRTVTYRIAHMVKEIGISPLNILALTFTNKAAREMKERAAALIGHEANNLVVST 87 Query: 66 FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEKLK--KSQDEFIK 109 F S L QK+IIT+ + + ++ K + K Sbjct: 88 FHSFSVRLLKTYSERIGYGRNFNIYDVDDQKSIITKIKKEMGIKDNDNVQPGKLANRISK 147 Query: 110 IRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++++ K + + L + Y+E K N +DF DL++N LL Sbjct: 148 LKEQGIGIKELEREIDMRIPANRLFGEIYQKYDEVLKANNAMDFSDLLLNARKLLDD--- 204 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 ++ +I + +I++DE QDT+ IQ+E+I + + R + VGDE QS Sbjct: 205 -TFVLERIQERYKYIVVDEYQDTNDIQYEMINMIAAKY----------RNICVVGDEDQS 253 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY+F GA +L +R ++ ++L ++RST IL +++ ++++ Sbjct: 254 IYAFRGANINNILNFERDYKEAF--------TVKLERNYRSTKKILDTANELIKNNKSSK 305 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 G + LW + ++ + + Sbjct: 306 GKT---------------------LW-------TDGSDGEKIKIYNAMTVYDE------- 330 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A I + KD+ +L R + ++ I Sbjct: 331 ADFIVTEMKKKKRDG----------ADYKDMTILYRTNAQSRVLEEKL----LSANIPYK 376 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464 IKD++A + ++ D+ +F ++ P + E + KI + Sbjct: 377 IYGGMQFFQRKEIKDILAYLSLLNNKNDNHNFYRIINVPKRSVGEKTLEKIQEVANEKNI 436 Query: 465 TVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 ++ E + + + + + + S + F IL + Sbjct: 437 SMLEALHYIDEIPVRAATKLALKEFYNLMQGIYSSLEEMSIKEIFDEILIRTRYIDSI-E 495 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + + ++E LN + E+ + SL E + + T + N V++MT+H Sbjct: 496 DNKEDRVKNIEELLNSIIELEKQNPNMSLNEYLDMISLSSSTD--EMEDDENYVKLMTIH 553 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 ++KGLE VFL +F Sbjct: 554 SSKGLEFDYVFLAGMEDGLFPSISFDSPEEELEEERRL---------------------- 591 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKH-----SNTSNEKKSNQRTWYDM 684 YV +TRA +L I + + R Y+M Sbjct: 592 ------------CYVAITRAKKELFISYSSSRKIWGKDDNLRRPSRFIYEM 630 >gi|254853669|ref|ZP_05243017.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503] gi|300765955|ref|ZP_07075927.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017] gi|258607048|gb|EEW19656.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503] gi|300513341|gb|EFK40416.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017] Length = 733 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 185/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKK---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537 Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|291302043|ref|YP_003513321.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] gi|290571263|gb|ADD44228.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] Length = 1041 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 140/951 (14%), Positives = 270/951 (28%), Gaps = 144/951 (15%) Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 +S+ LT + ++ + + + E+L++ E K+ + Sbjct: 153 MSAVSLTVETVVKRVLSLSDELSEHLREPEELEQFTQELANEIGERVGKGTQKTAQLLMA 212 Query: 129 LAKY-----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + A Y K+ +DF D + + + + +L+D Sbjct: 213 LQSRLQLLPIVADYRRRKRAEGAVDFADQLHYAAS---AAAAAPEVGRVERERFGVVLLD 269 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDTS Q E+++SL + AVGD QSIY++ GA + R Sbjct: 270 EYQDTSHAQVELLKSLFG----------GGHPVTAVGDPCQSIYAWRGASTGTLSRFPGD 319 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 G + +EL S+R+ A ILTV + V T G Sbjct: 320 FP---HADGTEADRLELTASWRNRASILTVANTV---------SEPLRTMGFPVSPLEPG 367 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 G ++ +++ D + A +A I + + Sbjct: 368 VPGEGEVTAAMLNTADDE------------------------AEWVATRIYRLWADNGFA 403 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + VL R+R P + R + V L D +++L + Sbjct: 404 PGSPVEGMPPTT-AVLARRRSQIPRLEKALRA----KGLPVEVIGLGGLLDAPEVRELHS 458 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-FQ 482 + +F+ +L P + DI + + E + A Sbjct: 459 TLTVLARPTAGPAFMRLLTGPRWRIGPRDIAALHARARELAPERRGFEPSAEGLNEASLA 518 Query: 483 HVIKYIHELIHIAQ--------------------FCSPHDFFTLILGAKKGRQQFISRFG 522 ++ + +L + D IL + G Sbjct: 519 EALEDLGDLRRYSDAAAERYTALREELGYLRSRLDQPVSDLIAEILKVSGLDIEVAVHRG 578 Query: 523 NEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTV 577 + + LD F++ +R S SL +S L+ + + + V+I+TV Sbjct: 579 D--SERLDAFIDEAVRYTSTASLPSLDGFLSYLDAAEERERGLELTGTTEHTGAVQILTV 636 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-------MPSLNDDPGIPIWIPQSKSRNN 630 H AKGLE V + V K + + P D +P + ++ Sbjct: 637 HAAKGLEWDCVAVPGLAKGVLPGKVMGGSWLTDTGKLPYPLRGDAAELPYFRLGGVTKAA 696 Query: 631 IVSDLIKHLKK----STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 +S KK + E RL YV +TRA L C + E + D Sbjct: 697 ELSRAEAEFKKDVQFHHEVEERRLAYVALTRARTHLFACGYWWDDGESAREPSPYLDETV 756 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP--------------------ENTPLER 726 + + + + ++ +W P + Sbjct: 757 AAGGRVDEWIEDPGEENPLLATELSADWPEPEPLGSNQITVAAAAGAVRASDGALDDSAQ 816 Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DTKGKTNLESLLSDNQ 778 + + + + + ++ P L+ S + + + Sbjct: 817 AKRWAEEAELLLAERAESASDGMEVPVPSQLSVSQLVAWHADAQEFAARLRRPVPEPPAP 876 Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 RG H ++ F + + L ++ Sbjct: 877 HTRRGTAFHAWVEKRFD------GGTLFDMDDLPGAADGEPDTDAELAALQEAFNASEWA 930 Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIP 897 S + ++V + +++ GR+D + I ++KT Sbjct: 931 ------SRTPIAVEVPFVTVLEGVVVRGRMDAVFATDDGGYEIVDWKTGRPPRGHAAKAA 984 Query: 898 YTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAE 946 +A Y + + YV + L + A Sbjct: 985 AVQLA---AYREAWAVLRGVHRSKVSAAFHYVRQNVTVRPSGLPLLEQLAA 1032 >gi|69246832|ref|ZP_00604141.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] gi|68195065|gb|EAN09527.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] Length = 744 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 120/760 (15%), Positives = 243/760 (31%), Gaps = 138/760 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 91 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKEFQYNQCMDFDDLIMNTIRLFEEHPDS-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A +++ +D +SF ++ SP I K+ + E + Sbjct: 382 GHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 ++ ++ T +S PE + + Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687 >gi|325680777|ref|ZP_08160315.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8] gi|324107557|gb|EGC01835.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8] Length = 1234 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 140/958 (14%), Positives = 287/958 (29%), Gaps = 144/958 (15%) Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA----KKKN 144 + D+ L+ + ++ + L EE K + Sbjct: 310 FKQDIGDVASILRSAAFGLDLSKEHLRA--SLDEAEKLFSAMCDLERRVEEISYDIKLER 367 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN------HILIDEVQDTSLIQWEVIRS 198 +DF D+ + T +LL K + R ++ +EI I+IDE QD + IQ + ++ Sbjct: 368 NAVDFSDIELMTKNLLVKETEDGFERTELAEEIRSGNFYEIIMIDEYQDVNDIQEMIFKA 427 Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 +++ + + F VGD KQ+IY F P+ + R + I Sbjct: 428 VSD----TDDLRFMGKNTFIVGDMKQAIYGFRKTNPELFKTCIEL--ARDHAEERSLEHI 481 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 L +FRS +++ + + +F + D R + +++ Sbjct: 482 SLQKNFRSRKEVIALSNYLFETLMSEGCGQVDYDDGERLEA---------------GAKY 526 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDIL 377 + P + D A R+A I MI + +G R + D Sbjct: 527 TERDCPAEVMLVDVPDDKSGSIPAEF--ERVAVRIKKMIDNGDPVCEDGVDRPCRQSDFC 584 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +LV + + D I + + R + + +D++ Sbjct: 585 ILVNTNDNIRQAADALSAVGLRA----FCEDTDGYIKSREISLALDVLRSVDNPMNDIAL 640 Query: 438 VCMLKSPLFNFSEDD------------------IFKICTQRHETETVYEYIQKFANCGIS 479 ++ SP+ F+ DD I++I + E K+ + G Sbjct: 641 AAVMMSPIMGFTPDDMTRVRIKCRSDKTKKLNHIYQILSGASREPNTDEKYAKYVDMGDE 700 Query: 480 ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLN 534 K + I L + + S I + L L Sbjct: 701 VLQAKCREAFDMIESLRYCSMSMSLERLIRQIFDKTDLMGITSLYLDSAKKRANLRLLLQ 760 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAKGLESPVVF 589 + E++ + + ++ K + +++ + V I T H +KGLE P VF Sbjct: 761 YAGDYERSGNEGVTGFLRFIDSVSGNDKAFKNAVSVTSDGDSVNIKTYHKSKGLEYPFVF 820 Query: 590 LVDTGSQVFSHK-HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 L ++ + + S + + N L + L + + E Sbjct: 821 LCTLSKKLVRDDARGDMIRLHKSEGCAFRLKNTRLNVERVNLYYDYLTELLDREQKSEKM 880 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RL YVG TRA ++LI+ + + ++N M+ D+ + E KI + +D Sbjct: 881 RLFYVGCTRAKEKLILVFSNEKTG--RTNHDRIRQMLCDAVRDSEIFDKIPANIAAEQDS 938 Query: 709 WIAYEWS---------------------------------------THHPENTPLEREET 729 +A+ T E + Sbjct: 939 MLAWAVMALAKLDGCGHLEEWLGMALDDVKKISPKEQVSLTYYEDDTEAVRKGDDEEDAE 998 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK--------------------TN 769 + ++ + I +L K + L P+ + Sbjct: 999 VIRVGADPAIVARLLKKYKTAYSTSESLLPAKLTVTEIVTAEKTKEFGSKNPEFFPNLPK 1058 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 L L RG HK +++ + ++ + + + Sbjct: 1059 LTEELDKLTAAERGTYTHKFMELADYKKAAENVRNELERLKNIGRMTEREAKGVYVDRLE 1118 Query: 830 RLLENPMMTTAMS-CDSYSEVSVSGKI----------NCPKKDIIISGRIDQISISQQNI 878 + ++ M+ D E + + ++ I G D I + Sbjct: 1119 KFVKTDFFARMMASSDLRREQKFLASVKDLKLGDKLKDYTTENGYIQGIADCIFKEEDGW 1178 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + +YKT + ++ + QL +Y+ + + + + + Sbjct: 1179 VLVDYKTDNFKDKDDMR---KYGTQLMLYKAAFELLFGERVKSSYIYSFKLGEGLEFD 1233 >gi|47095685|ref|ZP_00233292.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a F6854] gi|254900736|ref|ZP_05260660.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J0161] gi|254913779|ref|ZP_05263791.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818] gi|254938166|ref|ZP_05269863.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900] gi|47015970|gb|EAL06896.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a F6854] gi|258610779|gb|EEW23387.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900] gi|293591795|gb|EFG00130.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818] Length = 733 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLVAFLTD 537 Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|313623351|gb|EFR93578.1| ATP-dependent DNA helicase PcrA [Listeria innocua FSL J1-023] Length = 696 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 102/567 (17%), Positives = 185/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 150 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF 206 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 207 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYP--------SAKTILLEEN 248 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW + Sbjct: 249 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TNNAE 280 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + + D +L R Sbjct: 281 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTN 324 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 325 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 380 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + I + F Sbjct: 381 PKRGVGPGTLEKLNNVAAAYDLSLFEVLNRIELAGISAKISKDLVAFHDLIRGFTQMQDF 440 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 441 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLLAFLTD 500 Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K V +MT+H+AKGLE PVVFLV +F H Sbjct: 501 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 550 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 551 ------------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRM 586 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 587 LYGRPSSNQESRFIGEIPRDLLELGNE 613 >gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301] gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 1061 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 155/943 (16%), Positives = 304/943 (32%), Gaps = 111/943 (11%) Query: 2 KNRFGLSLNESYELIYKDL-WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + + + + I + W +S + + ++ IL + TL Sbjct: 177 REVLAQAQRDRLQQIQQSSDWQAAIEDLSGASWREADALSDQIQQILAWSDTLFD-PANS 235 Query: 61 CIEERFSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117 + + LTQ + + + + + L+++L+ + + +R Sbjct: 236 NWQATYDEFIKLKLTQAGSAKNWGSADTAKLLRTQCKVLRDRLRDE-ESLLSLRPNEADD 294 Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 + + + K+++ LDF DL L+ S +R Q Sbjct: 295 WNRDQRSRIYEAFETVLKSIDARKRQDRCLDFNDLERGAVRALE----SEAVRSHYQQRW 350 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 + +DE QDT+ Q +++++L L VGDEKQSIY F GA + Sbjct: 351 RYCFVDEFQDTNPTQSQILQAL---------WDPQHLILTLVGDEKQSIYGFRGAATQVF 401 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 + + I+ L SFR+ +L +++VF + + Sbjct: 402 RNW------QQQIQQHQGHIVTLSQSFRTHQTLLETINQVFEPVLD------------PY 443 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + R + L + + E + A IA I I Sbjct: 444 QPLRSDRQPPHPLPPIQQLVIEPEEKDSLE------------QARIQEATAIAQQIQTWI 491 Query: 358 GTDTIFSNG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + + R I DI +L R+R + + + N I V+ N L + Sbjct: 492 QQPLLVWDKPSNQHRPIAYGDIAILCRRR---APLETVYGEVLNQAGIPVLVNGGGSLLE 548 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474 DL AL F++ +DL+ +L+SP F S+ ++ + + + + + Q+ Sbjct: 549 TPVGYDLQALLEFLVYPSNDLALATLLRSPAFGLSDAQLY---QRAQQGKGWWSHRQERP 605 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFL 533 F IK + L+ F SP A S + + L Sbjct: 606 ---DPAFAAAIKILEGLLRSRFFESPLRLVQQFDRATGYSAVLASLPQAQRLLADWQALL 662 Query: 534 NFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 F + + L +L+Q + R N V +MT+H +KG E PVV + D Sbjct: 663 TFLREQPQAHDLELLLRYWKQLQQAEVVLPRPVLKAGNAVTLMTLHGSKGSEWPVVIIPD 722 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 ++ S + + G+ + P K + +++ E RLLY Sbjct: 723 LTAKPRSQAETVLF------DTELGVALRQPYVKEQAAAYQFFKYRKQQAEDAETRRLLY 776 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 VG TRA D L++ K + R+ D++ ++ + + Sbjct: 777 VGFTRARDLLLLTSP------KSAEARSPLDLLAPGLEQ-AAIQPLDPNSGTEIAVTATL 829 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + P G + E Sbjct: 830 PTADAPLFWQSTAAIAPQYSELSVSAFADYFRCPALFHFRYTQ-------GHPGAIDGEG 882 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 + ++ GL++H+ L++ PE L + Sbjct: 883 AGTSDRPPQLGLLVHRALELDLRQPEA---------LKPYCAAEDQDLIPQALQLASCFA 933 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 P+ + EV++ +++ +++ GR D + ++ ++KT Sbjct: 934 TEPVYSAVREQAQQREVTLHLELSS---GLVLKGRADLVGAD----WVLDFKTDQQP--- 983 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 P + QL Y L N+ + ++ ++ I Sbjct: 984 ---QPENYQLQLWAYAAAL-----NRP-QAAIAWLRHNQLDWI 1017 >gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 841 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 112/774 (14%), Positives = 222/774 (28%), Gaps = 161/774 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ + ++ L + Sbjct: 67 GAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMWVST 126 Query: 66 FSL---------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQ--D 105 F L++ F + ++T +++ ++ +Q + Sbjct: 127 FHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLLTMIAKDMQLDLKKYSARVLANQISN 186 Query: 106 EFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++ + T + + Y+ + +DF+DLI + + Sbjct: 187 RKNELISPEQARAEAERTKNPFEITVASVYEEYQRRLRAANSVDFDDLIGEVVRIFNQHP 246 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + H+LIDE QDT+ Q+ ++ +L L VGD Q Sbjct: 247 ---QVVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGR----GELPPDAPELCVVGDSDQ 299 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY+F GA + + +R + I L ++RST IL + V + E Sbjct: 300 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNEGR 351 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW + +Q + + Sbjct: 352 REKN---------------------LW-------TAHGQGEQIVGYVADNEHDE------ 377 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR IA I ++ T DI V+ R + + + I Sbjct: 378 -ARYIASEIDSLADKGTA----------YSDIAVMYRTNNASRALEDIF----VRSGIPY 422 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 + I+DL+A R + + +D +S ++ P + +I Sbjct: 423 KVVGGTRFYERREIRDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLG 482 Query: 465 TVYEYIQK---------FANCGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLI 507 + + ++ + + + + + Sbjct: 483 VSFGAALRDAAAGKVAGLGTRAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPDLGELLNAL 542 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-------------EQNSYSSLQE-- 549 L A R + + + +D L+E ++ + L E Sbjct: 543 LDATGYRAELENSNDPQDGARLDNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGE 602 Query: 550 -----LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L + LE+ +H V +MT+HTAKGLE PVVFL F H Sbjct: 603 AAPGSLQAFLEKVSLVADADQIPDHESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMR 662 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 E RL YVG+TRA +QL Sbjct: 663 SLGDP----------------------------------KELSEERRLAYVGITRAREQL 688 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + + S+ + + + ++ + +S++ + Sbjct: 689 YLTRAILRSSWGNPVTNPASRFLAEVPEDLIDWRREEPDSSLSSAWGGDDSYQY 742 >gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase UvrD/REP [Geobacter sulfurreducens KN400] Length = 739 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 107/640 (16%), Positives = 199/640 (31%), Gaps = 120/640 (18%) Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 ++R + + + + + A Y+E KK LDF DLI+ T L + Sbjct: 136 SLASAIDDCKNRGLAPEDLPADTFTGEVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFE 195 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + V + + + IL+DE QDT+ IQ+ ++R L + R L VGD Sbjct: 196 EHPV---VLERYRDQWRWILVDEYQDTNPIQYRLVRLLAGE----------HRNLCVVGD 242 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GA+ + +L ++ + I+L ++RST +IL V + Sbjct: 243 DDQSIYRWRGADIRNILDFEKDFP--------GVTTIKLEQNYRSTRNILAAAGAVVARN 294 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 + + S + D + Sbjct: 295 RGRKAKTLWSENPP----------------------------GDPIVYRRLADERDE--- 323 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +D+ V R + ++ Sbjct: 324 ----ARFVCREIERYVRRGGDL----------RDVAVFYRTNAQSRVVEDALVAD----G 365 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QR 460 I + + +KD++A R + + D++S ++ P + KI Sbjct: 366 IPYHMVGGMRFYERMEVKDVLAYLRVLANPADEVSLKRIINVPARGIGPGTVDKISELAV 425 Query: 461 HETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 T+ + + + A K + + + T I+ Sbjct: 426 RRGITILDALGEAATGGLLSSAPRGKVAAFAAVMERFFALRDQLPLAELTTRIIEESGYA 485 Query: 515 QQFISRFGNEVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHN 570 + +E D L E + E+ + L + ++ Sbjct: 486 DRLRQERTDEAADRLANLQELVAAMEEFERTSDERGLAPFLEQVALVSDLE--RSGTGRE 543 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +MT+H AKGLE P+VF++ ++F H Sbjct: 544 SATLMTLHAAKGLEFPMVFMIGMEEKLFPHVRSLDDP----------------------- 580 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYD 687 EE RL YVGMTRA ++L + ++ + + + Sbjct: 581 -----------EAMEEERRLCYVGMTRARERLCLTNARRRRIFGQDQVNMPSRFIADIPR 629 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 + + E + S+ D H + LE E Sbjct: 630 NLLDLEDEWQQPALGSVAPDTAGRGREPARHNLASILETE 669 >gi|257898302|ref|ZP_05677955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15] gi|257836214|gb|EEV61288.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15] Length = 748 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 122/802 (15%), Positives = 252/802 (31%), Gaps = 138/802 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 34 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 94 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A + + +D +SF ++ SP I K+ + E + Sbjct: 385 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 445 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 ++ ++ T ++ T + ++ P K Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAAYSYKQPETAVVSSKSATGGEKNSWKPGDKVKHKKWG 710 Query: 751 INEPYILNPSTIDTKGKTNLES 772 + ++ ++ D + S Sbjct: 711 LGTVVRVSGTSKDLELDVAFPS 732 >gi|167039196|ref|YP_001662181.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514] gi|300913209|ref|ZP_07130526.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561] gi|307723777|ref|YP_003903528.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513] gi|166853436|gb|ABY91845.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514] gi|300889894|gb|EFK85039.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561] gi|307580838|gb|ADN54237.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513] Length = 711 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 102/555 (18%), Positives = 187/555 (33%), Gaps = 112/555 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+D+II T +L K+ + ++ +I++DE QDT+ Q+ + L + + Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNTPQYHFVNMLAQKY 239 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 R L VGD+ QSIY + GA+ K +L ++ +I+L + Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYP--------DAKVIKLEQN 281 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL + V + + LW + Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 313 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I ++ + +D +L R Sbjct: 314 GEKIILCELDNEREE-------AEFVIQEIISLKERENR---------SFRDFAILYRTN 357 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + +I D IKD++A R +++ DD+SF ++ Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500 P I + + +++ I +K ++I ELI + Sbjct: 414 PKRGIGAATIEALEATALEKDTSLFFAIDDAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473 Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556 + IL ++ + + L EFLN E+ + SL+ ++ + Sbjct: 474 SEVINYILEETGYVEELEKEESEQAEGRIENLKEFLNAAYEFEESSEDKSLEAFLAGITL 533 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 V +MT+H+AKGLE PVVF+V +F Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGIFPS---------------- 575 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + EE RL YVG+TR+ ++L + + KS Sbjct: 576 ------------------FKSFTDEYELEEERRLCYVGITRSKEKLYMTYARRRNLYGKS 617 Query: 677 NQRTWYDMVYDSFHN 691 ++ + + Sbjct: 618 QYSSYSRFISEIPER 632 >gi|319408809|emb|CBI82466.1| DNA helicase II [Bartonella schoenbuchensis R1] Length = 805 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 106/550 (19%), Positives = 187/550 (34%), Gaps = 108/550 (19%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L Y++ K DF DL++++ ++ + I ++ + +IL+DE QDT Sbjct: 209 MGRELYHSYQDRLKSLNACDFGDLLLHSINIFQHNPD---ILHEYHAKFRYILVDEYQDT 265 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + L VGD+ QSIY + GA+ +LR ++ Sbjct: 266 NTAQYLWLRLLAQQST------RQQVNLCCVGDDDQSIYGWRGAKVDNILRFEKDFP--- 316 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL S + G + S Sbjct: 317 -----PAKIIRLERNYRSTSHILKTASHFISHNQGRLGKTLFS----------------- 354 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + ++ + +DS + AR IA I + Sbjct: 355 ---------DKTNNEEKKVKIHAAWDSEEE-------ARAIAKEIEQAQQSGHFL----- 393 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 D+ +LVR L ++ + + I+D +A R + Sbjct: 394 -----NDMAILVRASFQMRAFEERFITL----GLNYRVVGGPRFYERMEIRDALAYLRVV 444 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKF 481 DDL+F ++ +P E + + R ++ + + Sbjct: 445 AQPSDDLAFERIINTPKRGLGETTLRHLHNNARARAIPLFSAAIEIIETDELKPKARNAL 504 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 +++I+ H +++ + +IL + + E L+ EQ Sbjct: 505 RNIIEDFHRWQNLSPRTPLTELTEMILNDSGYMEMWQEDRSPEAPTRLENLKEMIRSMEQ 564 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L S LE + H+ N + V IMT+H+AKGLE VFL +F ++ Sbjct: 565 -----FENLHSFLEHVSLVMDVEHNENMDAVNIMTLHSAKGLEFKTVFLPGWEEGLFPNQ 619 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ EE RL YVG+TRA Sbjct: 620 RSLD--------------------------------EGGRAGLEEERRLAYVGLTRAQQN 647 Query: 662 LIICKHSNTS 671 L I SN Sbjct: 648 LHIWFVSNRR 657 >gi|49474442|ref|YP_032484.1| DNA helicase II [Bartonella quintana str. Toulouse] gi|49239946|emb|CAF26350.1| DNA helicase II [Bartonella quintana str. Toulouse] Length = 776 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 104/549 (18%), Positives = 180/549 (32%), Gaps = 107/549 (19%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L Y+ K DF DL+++ + + I + + +IL+DE QDT Sbjct: 209 MGRKLYCSYQNRLKSLNACDFGDLLLHCISIFQNNPD---ILHDYHSKFRYILVDEYQDT 265 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + L VGD+ QSIY + GA+ +LR ++ Sbjct: 266 NTAQYLWLRLLAQQP------KGQHVNLCCVGDDDQSIYGWRGAKVDNILRFEKDFP--- 316 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + S + G S Sbjct: 317 -----PAKIIRLERNYRSTSHILKTASHLISHNQGRLGKVLFSDQI-------------- 357 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 ++ + +DS AR I I ++ Sbjct: 358 ------------NIEEEKVKIHAAWDS-------QKEARAIGEEIEQAQQAGHSLNH--- 395 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 I +LVR L ++ + + I+D +A R + Sbjct: 396 -------IAILVRASFQMREFEDWFVTL----GLNYRVIGGPRFYERMEIRDALAYLRVV 444 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-----IQKFANCGISKFQ 482 + DDL+F ++ +P + + + R ++ + + + Sbjct: 445 VQPADDLAFERIINTPKRGLGDATLRTLYESARARDIPLFTAAEIIKTDELKPKARTALR 504 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 +++ H ++ Q+ + ++L + E L+ EQ Sbjct: 505 SIVENFHRWQNMLQYTPHRELAEIVLDDSGYTTMWQEDRSPEAPTRLENLKEMIRSMEQ- 563 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 + L S LE + ++ N + V IMT+H+AKGLE VFL +F H+ Sbjct: 564 ----FESLHSFLEHVALIMDAENNENTDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQR 619 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 +S EE RL YVG+TRA L Sbjct: 620 SLD--------------------------------ENGRSGLEEERRLAYVGLTRAKKYL 647 Query: 663 IICKHSNTS 671 I SN Sbjct: 648 HIWFVSNRR 656 >gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA] gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens PCA] Length = 739 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 108/640 (16%), Positives = 199/640 (31%), Gaps = 120/640 (18%) Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 ++R + + + + + A Y+E KK LDF DLI+ T L + Sbjct: 136 SLASAIDDCKNRGLAPEDLPADTFTGEVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFE 195 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + V + + + IL+DE QDT+ IQ+ ++R L + R L VGD Sbjct: 196 EHPV---VLERYRDQWRWILVDEYQDTNPIQYRLVRLLAGE----------HRNLCVVGD 242 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GA+ + +L ++ + I+L ++RST +IL V + Sbjct: 243 DDQSIYRWRGADIRNILDFEKDFP--------GVTTIKLEQNYRSTRNILAAAGAVVARN 294 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 + + S + D + Sbjct: 295 RGRKAKTLWSENPP----------------------------GDPIVYRRLADERDE--- 323 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +D+ V R + ++ Sbjct: 324 ----ARFVCREIERYVRRGGDL----------RDVAVFYRTNAQSRVVEDALVAD----G 365 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QR 460 I + + +KD++A R + + D++S ++ P + KI Sbjct: 366 IPYHMVGGMRFYERMEVKDVLAYLRVLANPADEVSLKRIINVPARGIGPGTVDKISELAV 425 Query: 461 HETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 TV + + + A K + + + T I+ Sbjct: 426 RRGITVLDALGEAATGGLLSSAPRGKVAAFAAVMERFFALRDQLPLAELTTRIIEESGYA 485 Query: 515 QQFISRFGNEVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHN 570 + +E D L E + E+ + L + ++ Sbjct: 486 DRLRQERTDEAADRLANLQELVAAMEEFERTSDERGLAPFLEQVALVSDLE--RSGTGRE 543 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +MT+H AKGLE P+VF++ ++F H Sbjct: 544 SATLMTLHAAKGLEFPMVFMIGMEEKLFPHVRSLDDP----------------------- 580 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYD 687 EE RL YVGMTRA ++L + ++ + + + Sbjct: 581 -----------EAMEEERRLCYVGMTRARERLCLTNARRRRIFGQDQVNMPSRFIADIPR 629 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727 + + E + S+ D H + LE E Sbjct: 630 NLLDLEDEWQQPALGSVAPDTAGRGREPARHNLASILETE 669 >gi|294614140|ref|ZP_06694061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636] gi|291592990|gb|EFF24578.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636] Length = 745 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 109/663 (16%), Positives = 211/663 (31%), Gaps = 121/663 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 +A A Y++ + N +DF+DLI+NT L ++ S + ++I +DE QD Sbjct: 170 EIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS---LTYYQNKFHYIHVDEYQD 226 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++ L F R L VGD QSIY + GA+ + +L ++ Sbjct: 227 TNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYGWRGADMQNILDFEKDYP-- 274 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++I L ++RST +IL+ ++V N + + Sbjct: 275 ------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN------------------- 309 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + + R I + I + Sbjct: 310 --LW-------TENKEGNKITYYRADNERDET-------RFIVDRMQEEIRNNHR----- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D +L R + ++ I D IKD++A Sbjct: 349 ----NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVGGHKFYDRKEIKDILAYLNV 400 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGI-----SKF 481 + + +D ++F ++ SP I K+ + E + E Q I + Sbjct: 401 LANPQDSINFERIVNSPKRGIGPGSIEKLRSFASLHEWPLLEAAQNVDLANIGGKAGQQL 460 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT-- 536 + I E+ + + + + +L + + E + L+EFL T Sbjct: 461 GAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNTLEAQARIENLEEFLTVTQE 520 Query: 537 --LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + EQ + +L + + + ++V +MT+H AKGLE PVVF Sbjct: 521 FDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDASQVTLMTLHAAKGLEFPVVF 580 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L+ VF Sbjct: 581 LIGLEEGVFPLSRALMEESELEEERRL--------------------------------- 607 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 YVG+TRA + L + + + ++ V + ++ ++ T Sbjct: 608 -AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQELLEIEGMRPTPKKTPVFA 666 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 ++ T + ++ P K + ++ ++ D + Sbjct: 667 KKTAAYSYKQPETAVVSSKSATGGEKNSWKPGDKVKHKKWGLGTVVRVSGTSKDLELDVA 726 Query: 770 LES 772 S Sbjct: 727 FPS 729 >gi|259501107|ref|ZP_05744009.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335] gi|315653835|ref|ZP_07906751.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195] gi|259167801|gb|EEW52296.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335] gi|315488531|gb|EFU78177.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195] Length = 744 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 115/671 (17%), Positives = 219/671 (32%), Gaps = 131/671 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +E E + + L ++ + +L ++ + + Sbjct: 68 AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 117 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ + NI +++ + L + ++++ + + + + Sbjct: 118 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 173 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ K +C++DF+DLI+ T L K + + + +IL+DE QD Sbjct: 174 ---AIVYREYQKNLKHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ L + + + VGD QSIY + GA + +L ++ + Sbjct: 228 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 277 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RST IL + V +N + Sbjct: 278 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 312 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + A I I+ I Sbjct: 313 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D IKD+MA R Sbjct: 349 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 403 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481 + + D +S ++ +P I F+ + + K Sbjct: 404 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 463 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + + + E+I A+ + + IL + E + LDEFL T + Sbjct: 464 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 523 Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + + + + L + + + N ++V +MT+H AKGLE PVVFLV Sbjct: 524 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 583 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F S EE RL YVG Sbjct: 584 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 609 Query: 655 MTRASDQLIIC 665 +TRA QL + Sbjct: 610 ITRAKKQLYLT 620 >gi|320529153|ref|ZP_08030245.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399] gi|320138783|gb|EFW30673.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399] Length = 1281 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 148/1053 (14%), Positives = 315/1053 (29%), Gaps = 157/1053 (14%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVS--DINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + F + ++ + + K L + + T + A+ + A + Sbjct: 257 DAFRAAAEKTRDAVLKHLGIYEALAGEVEAFAHAQNTAAWTKFVSAAAAAKKERGAIPRK 316 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 ++ +++ F N +T+ + L ++L ++ ++ +R N Sbjct: 317 DLDAYAPEIAAEF---------NRLTKTVFAAWDKLLKRLPETAEDLCAAENRANA---- 363 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----------SAWIR 170 L +A + K +L F DL LL I Sbjct: 364 -DIRRFAQLTIEFHAAMQREKIARGILYFSDLEHEALHLLCAHPEQLQADPTMVDPTDIA 422 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 ++ + I++DE QDT+ +Q ++R + F VGD KQSIY F Sbjct: 423 VELQGHFDAIMVDEYQDTNGLQEGILRQIA-----------RGDNRFIVGDVKQSIYRFR 471 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 A+P + R + A + +++ + +FRS A++L ++ +FS + Sbjct: 472 LADPVLFQQTYRAYRSGA----AEGTLVTMSENFRSRAEVLEPINYIFSQIMTETAVDIA 527 Query: 291 STTTIRHRSSR--IGQVGTVQLWEQ----VVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 R R G L ++ + ++E +S + + Sbjct: 528 YDEKARLNPGRKFDALPGGKSLAAPMELNLLRVDYTDRADEEEKEEGEEESGEELGKFEV 587 Query: 345 LARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 A IA I+ +I I +G + DI++L+R K + D I Sbjct: 588 EAHFIARRIAELISEKYIVHDGGGGHPLTYSDIVILLRAAKGRAGV---LIDALRDAGIP 644 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463 ++ + I+ ++AL + + D + +L SP+ +++ ++ Sbjct: 645 AYADEPGGYFESGEIRMMLALLAALDNARQDTALAAVLASPMIGLRMEELAELRAHTPRG 704 Query: 464 ETV----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-I 518 + + +++ +H ++ I A S + ++ Sbjct: 705 SIYDMLTADGGDELPAELMTRARHALERIRAWRRYALVHSVPELLWMLYRDTGYYDYVGT 764 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVR 573 G L ++ E+ + L + ++ + R + N VR Sbjct: 765 LPGGVLRQANLRMLIDRASEFERTNERGLFRFLRYIDALRSRSTDLSAARTLGESENVVR 824 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW--IPQSKSRNNI 631 IMT+H +KGLE PVVFL + G + + + + Sbjct: 825 IMTIHKSKGLEFPVVFLSNIGGSFNEKDTGGDLLYHAREGIGLRLFENTEAGRQRYDTLS 884 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-KKSNQRTWYDMVYDSFH 690 + + + + T+ E R+LYV MTRA ++LI+ N + K ++ + + Sbjct: 885 LRRVKDVIARETKAEEMRILYVAMTRAQEKLILTGTLNVTRSGKDKLEQLHEKCLTYAQE 944 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ-----LMDEQKIPKKLFS 745 + + + +WIA H + + I + Sbjct: 945 TGAVLPDASILGGKSYLDWIALALMRHPDGAQLFDADAEIAPYLPVSPAARFDVHLLDED 1004 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN--------RGL-IIHK-------- 788 +P + L + RG IH Sbjct: 1005 ARAARRRAADEDDPILAAVRADDPLPEGGRAEEVARILDWHYDARGTEHIHAKTSVTELK 1064 Query: 789 -----LLQVIFTLPEHKRKNFITSYCT-----------------------------KNAK 814 L++ + + + Sbjct: 1065 RRRAELIEEMPPPFAPALGDAGAETAEAWETPRFLRSDACAYLTPMERGIAMHTFMQQLD 1124 Query: 815 LWPAKEYKNLLLSITRLL----------ENPMMTTAM-------------SCDSYSEVSV 851 L A + ++ LL E+ + + Y E+ Sbjct: 1125 LTDAADIDAIVRQANTLLEKGILTEAERESIRIEHVWKFAASRLGRRMRAAKAVYRELPF 1184 Query: 852 SGKINC---------PKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901 + + I + G ID + + +YKT + + Sbjct: 1185 GRLLPAQKYYAEAQDAEDKIFLQGIIDVLFEEDDGGYVLLDYKTDRKI--SAAAARARYQ 1242 Query: 902 AQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVF 933 Q+ +Y + ++ + + L + + Sbjct: 1243 FQIDLYGEAVETIL-GRPVKERWLFLLDTGQEV 1274 >gi|88802827|ref|ZP_01118354.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P] gi|88781685|gb|EAR12863.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P] Length = 773 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 101/640 (15%), Positives = 204/640 (31%), Gaps = 121/640 (18%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEA 140 K + + K + ++ ++ + +R FN+ M ++ + + + Y Sbjct: 126 KEMGLDKERYKPKQILGRISSFKNSLVTVRAYFNSADMQEADMHASRPKVGEIYKEYVAR 185 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 K +DF+DL++ TN+LL + + K +I++DE QDT+ Q+ ++R+L Sbjct: 186 CFKAGAMDFDDLLLRTNELLARFPET---LAKYQNRFRYIMVDEYQDTNHSQYIIVRALA 242 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + F + VGD+ QSIYSF GA + +L ++ +L Sbjct: 243 DKF----------GNICVVGDDSQSIYSFRGANIQNILNFQKDYP--------DVKTFKL 284 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST++I+ + + + + ++W ++ Sbjct: 285 EQNYRSTSNIVNAANSIIAKNKTKLDK---------------------EVW------TEN 317 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + D R +A +I + N + VL Sbjct: 318 GAGEAINVMRTISDGEEG--------RFVAQSI---------WENQMNNQLSLDSFCVLY 360 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + I R I IKD+++ R +++ D+ + + Sbjct: 361 RTNSQSRAIEDALR----KKGIDYKIYGGISFYQRKEIKDILSYLRILINPNDEEALKRI 416 Query: 441 LKSPLFNFSEDDIFKICTQRHE--------TETVYEYIQKFANCGISKFQHVIKYIHELI 492 + P I K+ + + + + K +K Q+ + + L Sbjct: 417 INYPARGIGATTIDKLTIAANHYKKSIFDVLKYIDKIDLKINAGTKNKLQNFMNMMLRLQ 476 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN-----EQNSY 544 +Q + + +++ K + E ++ + E LN EQ Sbjct: 477 IESQTKNAFEIAEVVVKEAKFIKDLEKDGTPEAVSKVENIQELLNGIKDFITDKIEQGED 536 Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 +SL + ++ + V +MT+H +KGLE V++V +F Sbjct: 537 ASLTSFLEDVAL-ATDFDSEKKDDEPTVSLMTIHQSKGLEYLYVYVVGLEENLFPS---- 591 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 + +S EE RL YV +TRA + Sbjct: 592 ------------------------------AMSMSTRSELEEERRLFYVALTRAEKAAFL 621 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 K + + K Sbjct: 622 TYAQTRYRWGKLVDAEPSRFLEEIDDQYLHYLTPKAPEPA 661 >gi|167038090|ref|YP_001665668.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116497|ref|YP_004186656.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856924|gb|ABY95332.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929588|gb|ADV80273.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 711 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 103/555 (18%), Positives = 187/555 (33%), Gaps = 112/555 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+D+II T +L K+ + ++ +I++DE QDT+ Q+ + L + + Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNTPQYHFVNMLAQKY 239 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 R L VGD+ QSIY + GA+ K +L ++ +I+L + Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYP--------DAKVIKLEQN 281 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL + V + + LW + Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 313 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I ++ + +D +L R Sbjct: 314 GEKIILCELDNEREE-------AEFVIQEIISLKERENR---------SFRDFAILYRTN 357 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + +I D IKD++A R +++ DD+SF ++ Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500 P I + + +++ I +K ++I ELI + Sbjct: 414 PKRGIGAATIEALEATALEKDTSLFFAIDDAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473 Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556 + IL ++ + + L EFLN E+ + SL+ ++ + Sbjct: 474 SEVINYILEETGYVEELEKEESEQAEGRIENLKEFLNAAYEFEESSEDKSLEAFLAGITL 533 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 V +MT+H+AKGLE PVVF+V VF Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS---------------- 575 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + EE RL YVG+TR+ ++L + + KS Sbjct: 576 ------------------FKSFTDEYELEEERRLCYVGITRSKEKLYMTYARRRNLYGKS 617 Query: 677 NQRTWYDMVYDSFHN 691 ++ + + Sbjct: 618 QYSSYSRFISEIPER 632 >gi|289435096|ref|YP_003464968.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171340|emb|CBH27882.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 731 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 102/567 (17%), Positives = 186/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF 241 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 283 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + + D +L R Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNNSSRP---------LSDFAILYRTN 359 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 415 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + + + F Sbjct: 416 PKRGVGPGTLEKLNNVATAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDF 475 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISE 553 S + IL R + E + +DEFL+ T E+ +L +++ Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENEDKTLIAFLTD 535 Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 586 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 621 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELANE 648 >gi|146318385|ref|YP_001198097.1| superfamily I DNA/RNA helicase [Streptococcus suis 05ZYH33] gi|146320577|ref|YP_001200288.1| superfamily I DNA/RNA helicase [Streptococcus suis 98HAH33] gi|253751530|ref|YP_003024671.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84] gi|253753431|ref|YP_003026572.1| ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|253755741|ref|YP_003028881.1| ATP-dependent DNA helicase [Streptococcus suis BM407] gi|145689191|gb|ABP89697.1| Superfamily I DNA and RNA helicase [Streptococcus suis 05ZYH33] gi|145691383|gb|ABP91888.1| Superfamily I DNA and RNA helicase [Streptococcus suis 98HAH33] gi|251815819|emb|CAZ51427.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84] gi|251818205|emb|CAZ56006.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251819677|emb|CAR45461.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|319757962|gb|ADV69904.1| superfamily I DNA/RNA helicase [Streptococcus suis JS14] Length = 759 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 92/589 (15%), Positives = 183/589 (31%), Gaps = 118/589 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPE---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPES 272 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST ++L ++V N + Sbjct: 273 --------KVVLLEENYRSTKNVLQAANEVIENNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ D + A +A I + Sbjct: 306 --LW-------TQNAQGDLITYYRARDENDE-------AIFVAGQIDQLHREGKA----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 -----YKDFTVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNI 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + K+ + ++ E Q Sbjct: 396 IANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + ++ L + + +L ++ E + + EFL+ T Sbjct: 456 FDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQEFLSVTKN 515 Query: 539 NE----QNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + + + L +L L+ +EV +MT+H AKGLE PVVFL+ Sbjct: 516 FDEKDVEEEETGLDKLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIGM 575 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF + YV Sbjct: 576 EENVFPLSRAAEEEDELEEERRL----------------------------------AYV 601 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 G+TRA L + ++ ++N + + + + + Sbjct: 602 GITRAEQTLYLTNANSRLLFGRTNYNQPSRFIREISSDLLDYQGLARPA 650 >gi|154495304|ref|ZP_02034309.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC 43184] gi|154085228|gb|EDN84273.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC 43184] Length = 770 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 106/668 (15%), Positives = 203/668 (30%), Gaps = 134/668 (20%) Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFEDLII 154 Q ++ TYK ++ + L + + Y+ ++ +DF+DL++ Sbjct: 140 VQGRISNAKNALITYKAYEQNKELVQHDIDSKVPLLREIYKRYQNRCQQAGAMDFDDLLL 199 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 TN L + + K +L+DE QDT+ Q +++ L E R Sbjct: 200 QTNILFRDHPD---VLEKYRSFFQFVLVDEYQDTNFAQHLIVQRLCE----------VHR 246 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + VGD+ QSIYSF GA +L+ K I +L ++RST +I+ Sbjct: 247 RICVVGDDAQSIYSFRGANIDNILQFKNQYP--------GCRIFKLERNYRSTQNIVNAA 298 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + + + S + V + + Sbjct: 299 NSLIHKNTKQIPKTVYSE---------KEEGSKVSICSSYSDYEEGYA------------ 337 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 +A I++M + + D +L R + ++ R Sbjct: 338 --------------VAGKINDM----------RMQNYDYADFAILYRTNAQSRILEEALR 373 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 I +KD+++ R I++ D+ +F ++ P + + Sbjct: 374 ----KRGIPYKIYGGLSFYQRKEVKDVISYLRLIVNPHDEEAFKRVINYPARGIGDTTLN 429 Query: 455 KI-CTQRHETETVYEYIQK-------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 K+ +++ + N K + I I S + Sbjct: 430 KLVVAATDHNVSLWTVLNDPIGYALPVNNGTAKKLSDFRELISGFIERNVKLSAEEIAAA 489 Query: 507 ILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISELEQY 557 ++ E + L E L E + SL + +SE+ Sbjct: 490 VVKESGIVSTLFQDRSVEGISKQENLQELLKGIAEFCEIRREEGTEHVSLADFLSEVSLL 549 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 N+V +MTVH AKGLE VF+V +F K Sbjct: 550 TDQD-NDKEEQANKVTMMTVHAAKGLEFRNVFVVGLEEDLFPSAMSKDNP---------- 598 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 EE RL YV +TRA + ++ + +S Sbjct: 599 ------------------------RAVEEERRLFYVAITRAEENCVLTHARSRYRNGQST 634 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737 + + + + +++ + +A S+ + +E E + + Sbjct: 635 MCSPSRFL----KDIDPKYIYTSADAVTTNGLLATRRSSVFQQPKAMEGEAYVSPVAQAV 690 Query: 738 KIPKKLFS 745 +L Sbjct: 691 GRQARLTR 698 >gi|295426521|ref|ZP_06819171.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM 11664] gi|295063889|gb|EFG54847.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM 11664] Length = 749 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 102/582 (17%), Positives = 195/582 (33%), Gaps = 114/582 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y++ +++ ++DF+DLI+ T L KK + + +IL+DE QD Sbjct: 169 KMVAQIYQEYQKRLRRDQIMDFDDLIMQTLVLFKKD---KETLHYYQNKFRYILVDEYQD 225 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ +L + + + VGD QSIY + GA + ++ + + Sbjct: 226 TNQAQYELTHALAAQY----------KNICVVGDADQSIYGWRGANMENIMNFESDYKND 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++L ++RST IL+ + V +N + + Sbjct: 276 ------GVRTVKLEQNYRSTGHILSAANSVIKNNQNRKSKN------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ ++ + A I I + Sbjct: 311 --LW-------TDRGEGEKVTYYKAQSGDDE-------AHYIISKIQEEVKDQKR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + + D IKD+M+ + Sbjct: 350 ----SYKDFAVLYRTNAQSRTVEEAF----VKSNVPYQIVGGHKFYDRKEIKDVMSYLKL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKF 481 + + D +S ++ +P + K+ + + + +N + Sbjct: 402 VSNPADTMSLNRIINTPKRGIGAATVDKLLAFANENNLNALQAMDQVGMSTISNRAAQEL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 +H+ I+ A+ S IL + + + LDEFL+ T R Sbjct: 462 SDFAAKLHDAINFAKDHSVTGLTEKILDDFDYTSALKAEHNIDADTRLENLDEFLSVTKR 521 Query: 539 NE---QNSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + +L L + + + + N+V +MT+H AKGLE PVVFL+ Sbjct: 522 FDDHYEAEDDDSDQLSDFLAEVSLLSDQDDLDDDDNQVALMTLHAAKGLEFPVVFLIGME 581 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F + +S EE RL YVG Sbjct: 582 DGLFPLS----------------------------------RSMMDESQLEEERRLAYVG 607 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 +TRA +L + + + + + D V+ Sbjct: 608 ITRAKQELYLTNAYSRMMYGRIQNNPPSRFLAEIDAKDLNVE 649 >gi|312199973|ref|YP_004020034.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c] gi|311231309|gb|ADP84164.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c] Length = 834 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 100/681 (14%), Positives = 200/681 (29%), Gaps = 122/681 (17%) Query: 103 SQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + +++ ++ ++ +S + A Y+ ++ LDF+DLI+ T +LL Sbjct: 196 LAAQISTLKNELVDHETAQAKASSHPERTVAEVYALYQRRLREANALDFDDLIMTTVNLL 255 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH---------- 210 + + + H+L+DE QDT+ Q+ +IR L Sbjct: 256 Q---AFPDVAEHYHRRFRHVLVDEYQDTNHAQYVLIRELVGGGGSTAGRAPGRLLAAGPA 312 Query: 211 ----SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 P L VGD QSIY+F GA+ + ++ + + L ++RS Sbjct: 313 DPGLPGPAELCVVGDADQSIYAFRGADIRNIVEFEEDFP--------SAKTVLLEQNYRS 364 Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 T IL+ + V + + S + ++ Sbjct: 365 TQTILSAANAVIARNTQRKPKRLWS----------------------------DAGDGEK 396 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386 + + A +A + + ++ + D+ V R + Sbjct: 397 IVGFVADNEHDE-------AAFVAEEVDRLSDE---------KLARYADVAVFYRTNAQS 440 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 + + + + I+DL+A R + + D ++ +L +P Sbjct: 441 RVFEEIF----IRVGLPYKVVGGVRFYERKEIRDLLAYLRVLANPSDTVNLRRILNTPRR 496 Query: 447 NFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499 + + + + + A + + EL A Sbjct: 497 GIGDRAEAMLAAFAERERIGFADTLSRVDDVPGLATRSAKAIREFATLLAELRETA-EGD 555 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELE 555 P + +L + ++ E ++ L E + E+ +L + ++ Sbjct: 556 PVETIEAVLERTGYLSELVAEDTIESQGRVENLQELVEVVREYTERFPDGTLAGFLEQVS 615 Query: 556 QYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + + V +MT+H+AKGLE PVVFL +F H I Sbjct: 616 LVADADQIPSDDGSDGVVTLMTLHSAKGLEFPVVFLTGLEDGIFPHMRTLGDPI------ 669 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 EE RL YVG+TRA +L + + S Sbjct: 670 ----------------------------QMEEERRLAYVGVTRARQRLYLTRSVVRSAWG 701 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 + V + + +++ + S Sbjct: 702 QPAYNPPSRFVTEIPEHLLDWRRLAPAPAGPGPSGSGGFGSGGFGSGGFGSGAGRGGTAP 761 Query: 735 DEQKIPKKLFSPIKNDINEPY 755 + S P Sbjct: 762 AGSPFGQGRASSRPASRPIPA 782 >gi|302190445|ref|ZP_07266699.1| superfamily I DNA/RNA helicase [Lactobacillus iners AB-1] Length = 742 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 218/690 (31%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ + L + Sbjct: 30 GAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLDSDADSIWMST 89 Query: 66 FSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + N + ++ +K LK+ + K + + + Sbjct: 90 FHALCVRILRRYAEKIGYANNFSIADTAEQLTLIKRILKELNIDSKKFDPKSLVNAISNA 149 Query: 123 TLASLTL--------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 L + Y++ K +C++DF+DLI+ T L K Sbjct: 150 KNDLLDPEEYAKQVSNEYEKKIAIVYREYQKNLKHDCIMDFDDLIMQTLVLFKSEPE--- 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + + +IL+DE QDT+ Q+E+ L + + + VGD QSIY Sbjct: 207 VLHYYQNKFWYILVDEYQDTNQAQYELCHLLAQQ----------HKNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + + I+L ++RST IL + V +N + Sbjct: 257 WRGANMQNILNFEQDYRND------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 311 ---------------------LW-------TNSGEGSKVNYYRASTGNDE-------AIF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I+ I + D +L R + I I Sbjct: 336 IIGKINKEIKE---------NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETV 466 D IKD+MA R + + D +S ++ +P I F+ + + Sbjct: 383 GHKFYDRKEIKDIMAYLRLVANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTAL 442 Query: 467 YEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + + E+I A+ + + IL + Sbjct: 443 EALQSLELAPISGKLFNIMKDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHT 502 Query: 523 NEVI---DVLDEFLNFTLRNE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIM 575 E + LDEFL T + + + + + + L + + + N ++V +M Sbjct: 503 IEADTRLENLDEFLTVTKQFDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALM 562 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVVFLV +F Sbjct: 563 TLHAAKGLEFPVVFLVGMEEGIFP----------------------------------LA 588 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 S EE RL YVG+TRA QL + Sbjct: 589 RAQSDNSELEEERRLAYVGITRAKKQLYLT 618 >gi|227548288|ref|ZP_03978337.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227079606|gb|EEI17569.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 764 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 115/789 (14%), Positives = 230/789 (29%), Gaps = 165/789 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + L V+ + ++ L + Sbjct: 29 GAGSGKTAVLTRRIAYLLQERAVAPWQILAITFTNKAAAEMKERVANLVGPEAQRMWVAT 88 Query: 66 FSLLSSFFLTQKFTPQKNIITQ--------------------EINKKSPDLKEKLKKSQD 105 F + L Q+ + T ++ K + + Sbjct: 89 FHSVCVRILRQQAQLVAGLNTNFSIYDSDDSRRLLSMIAKDHNLDLKKFSARTLANAISN 148 Query: 106 EFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++ + + T L + A Y+ ++ LDF+DLI + K+ Sbjct: 149 HKNELVGPAEAGERAERTRNPFDLTVARVYADYQRRLRQANALDFDDLIGEVVRIFKEHP 208 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + H+L+DE QDT+ Q+E+I +L + L VGD Q Sbjct: 209 H---VTEYYRRRFRHVLVDEYQDTNHAQYELIHTLV-------GSGPDVPELAVVGDSDQ 258 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY+F GA + + +R S + L ++RST +IL + V + + Sbjct: 259 SIYAFRGATIRNIEEFERDYP--------DASTVMLEQNYRSTQNILGAANAVIAQNQGR 310 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW S ++ + + + Sbjct: 311 RPKN---------------------LW-------TSHGAGEKITGYVADNEHDE------ 336 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR IA I + + + DI V+ R + + + I Sbjct: 337 -ARFIASEIDRLADQGS----------RYSDIAVMYRTNNASRALEDIF----IRSGIPY 381 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463 + I+D++A + + + +D +S ++ P + + ++ Sbjct: 382 KVVGGTRFYERREIRDIVAYMKVLDNPDDTVSLRRIVNVPKRAIGDKAQAMVALHAQNNG 441 Query: 464 ETVYEYIQK--------FANCGISKFQHVIKYIHELIHIAQFCS--------PHDFFTLI 507 + + + A + + + EL + T I Sbjct: 442 ISFGQALVDASAGDVGMLAARSKNAIAGFVSLLDELRTDMADMTNEVTGMPDLGMLVTRI 501 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS--------------------- 543 L A R + + + +D L+E ++ + Sbjct: 502 LEATGYRAELEASNDPQDGARLDNLNELVSVAREFSSEAANQVAYISQDELDSVVEEGEP 561 Query: 544 -YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 SLQ + + + ++ V +MT+HTAKGLE P VF+ F H Sbjct: 562 MPGSLQAFLERVSLVADADQL-PDSDQGVVTLMTLHTAKGLEFPYVFVTGWEDGQFPHVR 620 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 E RL YVG+TRA +L Sbjct: 621 ALGDP----------------------------------EELAEERRLAYVGITRARTKL 646 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 + + S+ + + + ++++L S+ D W + Sbjct: 647 YLTRAVLRSSWGSPVTNPASRFLAEIPDDLIDWRRVELERSVTSDAWGTPHRRQAPAKTR 706 Query: 723 PLEREETIK 731 + + Sbjct: 707 VNKNLQLAP 715 >gi|323702799|ref|ZP_08114458.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM 574] gi|323532187|gb|EGB22067.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM 574] Length = 721 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 109/597 (18%), Positives = 197/597 (32%), Gaps = 120/597 (20%) Query: 103 SQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 +++ T +++ +A + Y+E KN LDF+DLI+ T L Sbjct: 138 LLAAISGAKNKLQTPDLYERQAFDYFEQVAARVYRLYQEKLFKNNALDFDDLIMLTVKLF 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 K+ + + +IL+DE QDT+ Q+ ++ L E R + VG Sbjct: 198 KEHPH---VLGYYQTKFKYILVDEYQDTNHAQYVLVNMLAE----------RHRNICVVG 244 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D QSIY + GA+ +L +R + +++L ++RST IL + V Sbjct: 245 DPNQSIYKWRGADINNILSFERDYPE--------AKVVKLEQNYRSTGTILQAANAVIKH 296 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 A+ L +LW ++ + Sbjct: 297 NLAAKDL---------------------ELW-------TAKGAGSPIHVYRAEN------ 322 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A +A + + Q KD++VL R + ++ + Sbjct: 323 -ERFEAYYVADKVKELKLAGR----------QYKDMVVLYRTHAQSRVLEEVL----LRA 367 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IKDL+A R I++ D S + ++ P I K+ Sbjct: 368 GIPYTIFGGLKFYERKEIKDLLAYLRVIVNPADSQSLLRIINVPKRGIGASSIEKMTAFA 427 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYI-------HELIHIAQFCSPHDFFTLILGAKKG 513 E + + K ++L +QF S + +L Sbjct: 428 VERDLNLLHALALVEDIPGIPAKARKQCNLLVDLLNDLRQQSQFLSVTEITEEVLNRTGY 487 Query: 514 RQQFISRFGNE---VIDVLDEFLNFTLRNE--QNSYSSLQELISELEQYPPTIKRAHSAN 568 + + + E I+ L EFL+ T + + L++ + + + N Sbjct: 488 KAELEAENTVETKTRIENLQEFLSVTKEYDKQHSEEGGLEDFLGSISLVTDMDRHDP--N 545 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 +++ +MT+H+AKGLE PVVF++ VF H Sbjct: 546 ADQLVLMTLHSAKGLEYPVVFMIGMEEGVFPHSRALYDQEELEEERRL------------ 593 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 YVG+TRA +QL + + ++N + Sbjct: 594 ----------------------AYVGITRAQEQLYLTHCWERTLFGRTNINQKSRFL 628 >gi|150007586|ref|YP_001302329.1| putative helicase [Parabacteroides distasonis ATCC 8503] gi|149936010|gb|ABR42707.1| putative helicase [Parabacteroides distasonis ATCC 8503] Length = 780 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 131/697 (18%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150 +L Q ++ TY ++ + L + + Y+ + +DF+ Sbjct: 138 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 197 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN L + + K ++L+DE QDT+ Q +++ L E Sbjct: 198 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 245 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIYSF GA +L+ K + I +L ++RST +I Sbjct: 246 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 296 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + + + +T Sbjct: 297 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 329 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 SY D + +A I+ M G D +L R + ++ Sbjct: 330 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 373 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD+++ R I++ D+ + ++ P + Sbjct: 374 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRIINYPTRGIGD 429 Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ +++ EY N K I I + S + Sbjct: 430 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 489 Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553 TL++ E + L E L E ++ + ++E Sbjct: 490 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 549 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + N ++V +MTVH AKGLE VF+V +F K Sbjct: 550 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 602 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 EE RL YV +TRA ++ + Sbjct: 603 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 634 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K++ T + D D + + + A E +P + ++ Sbjct: 635 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 691 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + + S + L Sbjct: 692 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 728 >gi|225629600|ref|ZP_03787615.1| DNA helicase II [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591546|gb|EEH12571.1| DNA helicase II [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 514 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 102/557 (18%), Positives = 184/557 (33%), Gaps = 121/557 (21%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + Y+E K +DF DL++ L + + + ++++D Sbjct: 38 RPVYVTALKVYHQYQERLKFLNSVDFGDLLLYNIQLFNQ---KTEVLSYYQNKFKYVMVD 94 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ IQ+ ++ L ++ + VGD+ QSIYS+ GAE + +L+ Sbjct: 95 EYQDTNAIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVENILKFFDD 144 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + ++L ++RST+ IL V + + Sbjct: 145 FKN--------AKTVKLECNYRSTSHILATASYVINHNKTRLEKK--------------- 181 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + ++ + +D + AR I+ I + Sbjct: 182 ------LW-------TTNIEGEKVNLIKLWDGKAE-------ARFISEQILKL------- 214 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + DI VLVR T ++ Y I + ++D++A Sbjct: 215 -----NKYRFSDIAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDIIA 265 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANC 476 R + + DDL+F ++ P + + KI T + + +E + Sbjct: 266 YLRLVTNNNDDLAFERIVNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSNQVTER 325 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534 + I I H+F ++ + + G I+ + E ++ Sbjct: 326 IKLSLNDFLNKIKAWEEIVSVKPLHEFVKIVANQSGYIEMLENEEVTGLARIENVKELIS 385 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + LE ++ + N + V +MT+H AKGLE P VFL Sbjct: 386 SLKNFDNA--------TTFLEHISLVMEVDNMNNDDTVYVMTLHAAKGLEFPCVFLPGWE 437 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H+ EE RL YVG Sbjct: 438 EGLFPHQRSFDDKSG--------------------------------KALEEERRLAYVG 465 Query: 655 MTRASDQLIICKHSNTS 671 +TRA ++LII Sbjct: 466 ITRAKERLIISCADRRE 482 >gi|329767008|ref|ZP_08258536.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341] gi|328837733|gb|EGF87358.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341] Length = 728 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 184/549 (33%), Gaps = 112/549 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + AHY+ KKN VLDF+DL++ T L KK + + +I +DE QDT+ Sbjct: 168 VAEIYAHYQRYLKKNSVLDFDDLMLKTIILFKKFPE---VLAIYQNKFEYIHVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +IQ+ +I+ L+E + + VGD+ QSIYS+ GA ++ ++ Sbjct: 225 VIQYRLIKMLSE----------VHKNVCVVGDDDQSIYSWRGACSDNIINFEKDY----- 269 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + +I L ++RS + IL + V + + + Sbjct: 270 ---KDVELIFLDQNYRSNSTILDAANAVIKNNTDRKEKA--------------------- 305 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW +++ + + + D + IA I + Sbjct: 306 LWS------ENKGGGKISVYAASNDKDETDD--------IAKKILELKKEG--------- 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KDI +L R + + I ++DL+A I+ Sbjct: 343 -ISYKDIAILYRANYLSRQMENSCLAF----GIPYKLIGSLKFLQRQEVRDLLAYLNVIV 397 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF-ANCGISKFQHVIKY 487 +++D+ S ++ P + KI ++++ ++ A K + Sbjct: 398 NRDDEFSLRRIINVPKRGIGASSMEKIDNYATQYGISLFDALKNIEAVGVSKKITTNVHL 457 Query: 488 IHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + LI S + I + + E ++ + Sbjct: 458 LTNLIEKYSETDKYSIDELIIGIYKDSGYESMLKESNDAYAESRIENISELVSSAKQFSS 517 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + LI + + T + V + TVH AKGLE VVF++ +F Sbjct: 518 MN----DSLIDFISEMSLTSDADDENEEDSVVLSTVHAAKGLEYKVVFIMGLEENLFPS- 572 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 I +K+ EE RL YV +TRA ++ Sbjct: 573 -----------------------------IRDAESSADEKNKMEEERRLAYVAITRAKEK 603 Query: 662 LIICKHSNT 670 L + + Sbjct: 604 LFMSYANRR 612 >gi|301310450|ref|ZP_07216389.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3] gi|300832024|gb|EFK62655.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3] Length = 779 Score = 292 bits (748), Expect = 2e-76, Method: Composition-based stats. Identities = 112/698 (16%), Positives = 206/698 (29%), Gaps = 131/698 (18%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150 +L Q ++ TY ++ + L + + Y+ + +DF+ Sbjct: 138 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 197 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN L + + K ++L+DE QDT+ Q +++ L E Sbjct: 198 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 245 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIYSF GA +L+ K + I +L ++RST +I Sbjct: 246 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 296 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + + + +T Sbjct: 297 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 329 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 SY D + +A I+ M G D +L R + ++ Sbjct: 330 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 373 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD+++ R I++ D+ + ++ P + Sbjct: 374 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRIINYPTRGIGD 429 Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ +++ EY N K I I + S + Sbjct: 430 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 489 Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553 TL++ E + L E L E ++ + ++E Sbjct: 490 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 549 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + N ++V +MTVH AKGLE VF+V +F K Sbjct: 550 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 602 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 EE RL YV +TRA ++ + Sbjct: 603 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 634 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K++ T + D D + + + A E +P + ++ Sbjct: 635 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 691 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 + + S + L Sbjct: 692 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDASVLR 729 >gi|160946300|ref|ZP_02093509.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270] gi|158447416|gb|EDP24411.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270] Length = 1261 Score = 292 bits (748), Expect = 2e-76, Method: Composition-based stats. Identities = 124/672 (18%), Positives = 245/672 (36%), Gaps = 54/672 (8%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109 + L++ + E + ++ FL + + + +E+ + +K++L + E + Sbjct: 265 ENLKKFLKDNTKFEELKISTNEFLRLNFGSFRISKCDEEVKEIYNKVKKELDSIKSEISE 324 Query: 110 IRDRF---------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + ++ + + + E K+K +DF D+ ++L Sbjct: 325 SLKTLNLDLENIKKESDLIYPYVRSISDVVIKFKEKFWERKQKFNYVDFADIEHLALEIL 384 Query: 161 KKRDVSAWI-----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 DV I + ++ + + IDE QD++L+Q ++ ++ ++ Sbjct: 385 VDIDVDGNIKPSKTALEYQEKYSEVFIDEYQDSNLVQEILLSAVAKE-----------NN 433 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 F VGD KQSIY F A+P + + + + I L +FRS +IL + Sbjct: 434 RFMVGDVKQSIYRFRQADPSIFMEKYENYYRVEEDIESFNRKIMLYANFRSRKEILEGTN 493 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRI------GQVGTVQLWEQVVSQHDSQCNPQQESW 329 VFS + D T R G V++ V DS+ + Sbjct: 494 LVFSKIMKKETGELDYTVDERLNPMASFKESDENVGGAVEIL-LVDENSDSEDEDEIILT 552 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN------GKKRVIQAKDILVLVRKR 383 Y + + S + +IA TI NM+ R ++ KDI++L+R Sbjct: 553 DEYSEDFEEMKSFKLECIKIANTIYNMMNNKENPFKVYDKNLDDYRKVEYKDIVILMRSP 612 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 I + +Y I + D + ++ L + I + D+ + ++ S Sbjct: 613 SSNTKI---LEEVFLEYNIPIYAESTGGYFDTFEVDTIINLLKIIDNPMQDIPLISVMYS 669 Query: 444 PLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496 P++NF+ ++ +I E + + + + K I + I Sbjct: 670 PIYNFTSKELSEIRLVDRELKFYELLIKILEDEDIEIRISLKEKISKFIYDLKLFIEKKS 729 Query: 497 FCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 S + + + G + L E+NSY L ++ ++ Sbjct: 730 LVSADELIWFLYKYTGYYNYVGLLDMGEQRKTNLMLLFEKAKNYEKNSYKGLFNFVNYIQ 789 Query: 556 QYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 + + + + N V+IM++H +KGLE P+VFL +T + + + Sbjct: 790 KISLKSDISEAKLISEDANVVKIMSIHKSKGLEFPIVFLANTNKKFNFRADDSNLVLHQK 849 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L + ++ + + + K K E RLLYV MTRA ++LII Sbjct: 850 LGFGAVVYDMDKKTSFNSIMKKKIEKFKKNEQIAEEMRLLYVAMTRAKEKLIITGRVKDY 909 Query: 672 NEKKSNQRTWYD 683 + + D Sbjct: 910 ENLREEISSGID 921 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 25/180 (13%) Query: 780 FNRGLIIHKLLQVIFTLP---------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 +G I H +Q++ + K+ I S+ KN E N+ I + Sbjct: 1083 AEKGTIFHLAMQLLDFSKFDTEDVSKIREEIKSQINSFVEKNIMSLDEIETINI-NWIVK 1141 Query: 831 LLENPMMTTAMSCD----SYSEVSVSGKINC----------PKKDIIISGRIDQISI-SQ 875 +++ + + + E ++ I + I++ G ID Sbjct: 1142 FIKSDIFKEIYIANKFGKLFKEKAIDYNIKLKNLFKDENIEEYEKIMVVGIIDLFFENEN 1201 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 I + +YKT + + +E + + QL +Y+ ++D K L + I Sbjct: 1202 GEIILLDYKTDYVTKENLEEVKARYKVQLDLYKSAIEDISGKKVTKKGLYLFGINEFVEI 1261 >gi|255013887|ref|ZP_05286013.1| putative helicase [Bacteroides sp. 2_1_7] Length = 780 Score = 292 bits (748), Expect = 2e-76, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 131/697 (18%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150 +L Q ++ TY ++ + L + + Y+ + +DF+ Sbjct: 138 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 197 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN L + + K ++L+DE QDT+ Q +++ L E Sbjct: 198 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 245 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIYSF GA +L+ K + I +L ++RST +I Sbjct: 246 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 296 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + + + +T Sbjct: 297 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 329 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 SY D + +A I+ M G D +L R + ++ Sbjct: 330 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 373 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD+++ R I++ D+ + ++ P + Sbjct: 374 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRMIVNPHDEEALKRIINYPTRGIGD 429 Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ +++ EY N K I I + S + Sbjct: 430 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 489 Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553 TL++ E + L E L E ++ + ++E Sbjct: 490 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 549 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + N ++V +MTVH AKGLE VF+V +F K Sbjct: 550 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 602 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 EE RL YV +TRA ++ + Sbjct: 603 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 634 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K++ T + D D + + + A E +P + ++ Sbjct: 635 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 691 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + + S + L Sbjct: 692 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 728 >gi|116873192|ref|YP_849973.1| ATP-dependent DNA helicase PcrA [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742070|emb|CAK21194.1| ATP-dependent DNA helicase, PcrA family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 733 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 103/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF 243 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + R + D +L R Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 417 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + + + F Sbjct: 418 PKRGVGPGTLEKLNNVAAAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDF 477 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLLAFLTD 537 Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650 >gi|323140468|ref|ZP_08075396.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT 12067] gi|322415036|gb|EFY05827.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT 12067] Length = 741 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 108/757 (14%), Positives = 230/757 (30%), Gaps = 138/757 (18%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78 + L V + ++ + A+ F + L + Sbjct: 40 RIAHLLQQGVRPYRILAITFTNKAAAEMRERVDRMAGAAARDVWLFTFHAFCARLLRYEL 99 Query: 79 TP---------------QKNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 KN+I Q + + + + L ++ + Sbjct: 100 ENLNGYANNFAIYDTSDSKNLIKQVMKEMNLDEKRFPLPAIISHISNAKNALLLPDAYAR 159 Query: 123 TLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + + Y++ + N +DF+DL++ LL++ +R K ++ +++ Sbjct: 160 EASGYYEQQVAKIYDAYQKKLQANNAVDFDDLLLLALRLLQENPA---VREKYQRKFDYL 216 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ Q+ + + L R + VGD QSIY + GA+ + +L Sbjct: 217 MVDEYQDTNHAQYLLTKLLAA----------GHRNICVVGDADQSIYGWRGADIQNILDF 266 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ +++L ++RST IL + V + + Sbjct: 267 EKDYP--------DAKLVKLEQNYRSTQVILDAANAVIDNNSGRKPKN------------ 306 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + N + + D + AR + + + Sbjct: 307 ---------LW-------TANGNGSEIVYYQANDERDE-------ARYVIENMQKL---- 339 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + D+ VL R + + + I+ + IKD Sbjct: 340 -----QLNEGAKLGDMAVLYRTNAQSRVFEEML----IKSGIAYTMVGGTKFYERKEIKD 390 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------F 473 +A R + + D LS + ++ P + + ++ ++++E + Sbjct: 391 ALAYLRLLYNPHDSLSLLRIINVPRRGIGDATMARLQEYANASGQSLFEVVTNAADVPGL 450 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 A +K + + EL+ A +L ++ + + ++ L Sbjct: 451 ARRFANKLDELSGLLFELMGEAADVPVKQLLDDVLLKTGYLEELQNSKDPQDESRVENLK 510 Query: 531 EFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 E L+ T +L+ ++++ V +MT+H+AKGLE Sbjct: 511 EMLSVTEEFAVKCERNGEEPTLENFLADVALVADID--DAELGEEAVTLMTLHSAKGLEF 568 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P VFLV +F H + ++ E Sbjct: 569 PNVFLVGMEEGIFPHSRTL----------------------------------MDENEIE 594 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YVG+TRA L + + ++ T + + N V K + Sbjct: 595 EERRLCYVGITRAEKHLFLSNARTRTIYGRTQYYTPSRFLQEVPRNLVHVIKRPVVQRPA 654 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + + + + + + Sbjct: 655 MTQQVHKPTAKENANWFEQHKASFFPRESSAAAGCSF 691 >gi|302553643|ref|ZP_07305985.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM 40736] gi|302471261|gb|EFL34354.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM 40736] Length = 826 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 119/723 (16%), Positives = 231/723 (31%), Gaps = 133/723 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D + D F Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEEDFAAQASDGFEKT--------- 233 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 234 ---LAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRT-----LFAVGDEKQSIYSFHGAEPKRVLREK 241 DT+ Q+ ++R L + P L VGD QSIY+F GA + +L+ + Sbjct: 288 DTNHAQYALVRELVGTTEHPVDVPPGPEDVPPAELCVVGDADQSIYAFRGATIRNILQFE 347 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I L ++RST IL+ + V E+ + + Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 386 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW ++ Q + + + A+ +A I + Sbjct: 387 --------LW------TNAGTGAQITGYVADTEHDE--------AQFVAEEIDRLTDAGE 424 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +A D+ V R + + + + + ++D+ Sbjct: 425 ---------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDV 471 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FA 474 +A R + + ED + +L P + I + E + + +++ A Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFPQALKRVDEAYGMA 531 Query: 475 NCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 + + + +L I + + P +L + + + I+ L Sbjct: 532 ARSTNAVRRFNALMEDLRTIVESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQ 591 Query: 531 EFLNFTLRNEQNSYSS----LQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLES 585 E + EQ L + + ++ + + + + V +MT+HTAKGLE Sbjct: 592 ELAAVAMEFEQERGEDEQGTLADFLEQVALVADSDQIPDEEDGDGVITLMTLHTAKGLEF 651 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVVFL VF H + E Sbjct: 652 PVVFLTGMEDGVFPHMRALG----------------------------------QTKELE 677 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YVG+TRA ++L + + + S + + + + K+ T + Sbjct: 678 EERRLAYVGITRARERLYLTRSTMRSAWGQPSYNPPSRFLEEIPPAHLEWKRTGATAPAS 737 Query: 706 KDE 708 Sbjct: 738 SGP 740 >gi|253580201|ref|ZP_04857468.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848720|gb|EES76683.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 744 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 114/688 (16%), Positives = 216/688 (31%), Gaps = 129/688 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T ++ + + L ++ + NI T++ + + Sbjct: 91 TCVRILRRYIDRLGYDTRFAIYDTEDQKTLMKEVCRKLNIDTKKTKE---------RSLL 141 Query: 105 DEFIKIRDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 + +D T + + Y+ A ++N LDF+DLI+ T +L + Sbjct: 142 AQISHAKDELITPDEMELNAGGDFVKKKVAEVYREYQAALRRNNALDFDDLIVKTVELFQ 201 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + + +I++DE QDT+ Q++ I L + L VGD Sbjct: 202 N---CGDVLENYQERFRYIMVDEYQDTNTAQFKFISLLASKYE----------NLCVVGD 248 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY F GA +L + + +I L ++RST +IL + V + Sbjct: 249 DDQSIYKFRGANIGNILGFEHVFP--------DAKVIRLEQNYRSTKNILNAANAVIANN 300 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 + + + LW ++ + + + + Sbjct: 301 TSRKSKT---------------------LW-------TENSEGERIHFRQFMNGYEE--- 329 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 A + IS + KD VL R + L Sbjct: 330 ----AEYVIGEISRAHRE---------NGAKYKDCAVLYRTNAQSRLFEEK----CLLAN 372 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 I IKDL+ + I + DDL+ ++ P + +I Sbjct: 373 IPYKIVGGVNFYARKEIKDLLCYLKTIDNSRDDLAVRRIINVPKRGIGATTLGRIQDYAD 432 Query: 461 HETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 + + Y+ ++ +SK + +I L A+ + + ++ Sbjct: 433 KMSVSFYDALRVAEEVPSIGRSLSKIDGFVTFIQSLKSKAESYTVRELLEEVIELTGYVA 492 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRAHSA 567 + + +E I+ +DE ++ T EQ ++L + E+ Sbjct: 493 ELQAEDTDESKARIENIDELISKTESYQEVMEEQGQTATLSGFLEEIALIADIDSVDP-- 550 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + + V +MT+H+AKGLE P VFL +F Sbjct: 551 DQDYVLLMTLHSAKGLEFPRVFLAGMEDGMFPSYMS------------------------ 586 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687 I +S EE RL YVG+TRA + L + + V + Sbjct: 587 --------IISDDRSDLEEERRLCYVGITRAMEDLTLTSARQRMLRGEVQYNKVSRFVRE 638 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWS 715 + + +E I + + Sbjct: 639 IPRELVDLGQEAQEKKKKIEEMIQADRN 666 >gi|227504218|ref|ZP_03934267.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940] gi|227199173|gb|EEI79221.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940] Length = 869 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 108/777 (13%), Positives = 222/777 (28%), Gaps = 165/777 (21%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ + ++ L + Sbjct: 98 GAGSGKTAVLTRRIAYLMRNRGVAPWEILAITFTNKAAAEMKERVGQLVGPVAERMWVST 157 Query: 66 FSLLSSFFLTQKFTPQKNIIT------------------QEINKKSPDLKEKLKKSQ--D 105 F + L Q + T +++ ++ +Q + Sbjct: 158 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLTMIAKDMQLDLKKYTARVLANQISN 217 Query: 106 EFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++ + T + + Y+ + +DF+DLI + + Sbjct: 218 HKNELVSPDYALAEAEKTKNPFDITVARVFDEYQRRLRAANSVDFDDLIGEVVRIFNQHP 277 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + H+LIDE QDT+ Q+ ++ +L +G + L VGD Q Sbjct: 278 ---QVVDFYRRRFKHVLIDEYQDTNHAQYALVSALVGRGELGPDA----PELCVVGDSDQ 330 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY+F GA + + +R + I L ++RST IL + V + E Sbjct: 331 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNEGR 382 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW + + + + Sbjct: 383 REKN---------------------LW-------TAHGEGAKIVGYVADNEHDE------ 408 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR IA I ++ DI ++ R + + + I Sbjct: 409 -ARFIASEIDSLSDKGR----------DYSDIAIMYRTNNASRALEDIF----VRSGIPY 453 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-- 462 + I+D++A R I + +D +S ++ P + +I Sbjct: 454 KVVGGTRFYERREIRDMVAYLRIIDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLG 513 Query: 463 ---TETVYEY----IQKFANCGISKFQHVIKYIHELIHIAQFCS--------PHDFFTLI 507 + +Y+ + ++ + + + + + + + Sbjct: 514 ISFGKALYDAAAGNVAGLGTRAVNSVSKFNEMMEGIRAQIPGMTNEVTHQPDLGELLSAV 573 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS--------------------- 543 L A R + + + +D L+E ++ + Sbjct: 574 LDATGYRAELENSNDPQDGARLDNLNELVSVAREFSSEAANQLAFTGADVENDISPELAE 633 Query: 544 ----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 SLQ + ++ + V +MT+HTAKGLE PVVFL F Sbjct: 634 GEALPGSLQAFLEKVSLVADADQI-PDNESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFP 692 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H E RL YVG+TRA Sbjct: 693 HMRSLGDP----------------------------------KELSEERRLAYVGITRAR 718 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 +QL + S+ + + + ++ + +S++ + Sbjct: 719 EQLYFTRAILRSSWGNPMTNPASRFLAEVPEDLIDWRREEPDSSLSSAWGGDDSYQY 775 >gi|325913324|ref|ZP_08175692.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B] gi|325477427|gb|EGC80571.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B] Length = 742 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +E E + + L ++ + +L ++ + + Sbjct: 66 AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ + NI +++ + L + ++++ + + + + Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ + +C++DF+DLI+ T L K + + + +IL+DE QD Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ L + + + VGD QSIY + GA + +L ++ + Sbjct: 226 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RST IL + V +N + Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + A I I+ I Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D IKD+MA R Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481 + + D +S ++ +P I F+ + + K Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + + + E+I A+ + + IL + E + LDEFL T + Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521 Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + + + + L + + + N ++V +MT+H AKGLE PVVFLV Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F S EE RL YVG Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607 Query: 655 MTRASDQLIIC 665 +TRA QL + Sbjct: 608 ITRAKKQLYLT 618 >gi|309808887|ref|ZP_07702768.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 01V1-a] gi|308167885|gb|EFO70022.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 01V1-a] Length = 742 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 121/690 (17%), Positives = 220/690 (31%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + V+ N + ++ + L + Sbjct: 30 GAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLDSDADSIWMST 89 Query: 66 FSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + N + ++ +K LK+ + K + + + Sbjct: 90 FHALCVRILRRYAEKIGYANNFSIADTAEQLTLIKRILKELNIDSKKFDPKSLVNAISNA 149 Query: 123 TLASLTLAKY--------------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 L +Y + Y++ + +C++DF+DLI+ T L K Sbjct: 150 KNDLLDPVEYAKQVSNEYEKKIAIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE--- 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + + +IL+DE QDT+ Q+E+ L + + + VGD QSIY Sbjct: 207 VLHYYQNKFWYILVDEYQDTNQAQYELCHLLAQQ----------HKNICVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + + I+L ++RST IL + V +N + Sbjct: 257 WRGANMQNILNFEQDYRND------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK 310 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 311 ---------------------LW-------TNSGEGSKVNYYRASTGNDE-------AIF 335 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I+ I + D +L R + I I Sbjct: 336 IIGKINKEIKE---------NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVG 382 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETV 466 D IKD+MA R + + D +S ++ +P I F+ + + Sbjct: 383 GHKFYDRKEIKDIMAYLRLVANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTAL 442 Query: 467 YEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 K + + + E+I A+ + + IL + Sbjct: 443 EALQSLELAPISGKLFNIMKDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALRAEHT 502 Query: 523 NEVI---DVLDEFLNFTLRNE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIM 575 E + LDEFL T + + + + + + L + + + N ++V +M Sbjct: 503 IEADTRLENLDEFLTVTKQFDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALM 562 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVVFLV +F Sbjct: 563 TLHAAKGLEFPVVFLVGMEEGIFP----------------------------------LA 588 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 S EE RL YVG+TRA QL + Sbjct: 589 RAQSDNSELEEERRLAYVGITRAKKQLYLT 618 >gi|306835613|ref|ZP_07468623.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC 49726] gi|304568504|gb|EFM44059.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC 49726] Length = 847 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 111/771 (14%), Positives = 218/771 (28%), Gaps = 164/771 (21%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + + V+ + ++ +L + Sbjct: 73 GAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKAAAEMKERVGSLVGPVAERMWVST 132 Query: 66 FSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 F + L Q + T + + L K Q + K R ++ Sbjct: 133 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDMQLDLKKYTPRVLANQISN 192 Query: 122 STLASL-----------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 + T + A Y+ + +DF+DLI + + Sbjct: 193 HKNELVGPAEAADKAQQTKNPFETTVADVYAEYQRRLRAANAVDFDDLIGEVVRIFTEH- 251 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + H+LIDE QDT+ Q+ ++ +L +G + L VGD Q Sbjct: 252 --KQVVEFYRRRFKHVLIDEYQDTNHAQYALVAALVGKGELGPDA----PELCVVGDSDQ 305 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY+F GA + + +R + I L ++RST IL + V + EN Sbjct: 306 SIYAFRGATIRNIEEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNENR 357 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW + + + + + Sbjct: 358 REKN---------------------LW-------TAHGDGESIVGYVADNEHDE------ 383 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR IA I + DI V+ R + + + I Sbjct: 384 -ARFIAAEIDALADKGH----------SYSDIAVMYRTNNSSRALEDIF----IRSGIPY 428 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463 + I+D++A R + + +D +S ++ P + +I ++ Sbjct: 429 KVVGGTRFYERREIRDMVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQGQIALHAENQG 488 Query: 464 ETVYEYIQKFANCGISKFQ--------HVIKYIHELIHIAQFCS--------PHDFFTLI 507 + + + + + + + T I Sbjct: 489 ISFGKALADVPRGDVPGLGTRAVNAVTKFNDMMEGIRAQIPGMRDEVTGQPDLGELLTAI 548 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS--------------------- 543 L A + + + +D L+E ++ + Sbjct: 549 LDATGYKAELEKSNDPQDGARLDNLNELVSVAREFTSEAANQLAAAGADAVDPNELLEEG 608 Query: 544 ---YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 SLQ + ++ + + V +MT+HTAKGLE PVVF+ F H Sbjct: 609 EAAPGSLQAFLEKVSLVADADQI-PDSETGVVTMMTLHTAKGLEFPVVFVAGWEDGQFPH 667 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 E RL YVG+TRA + Sbjct: 668 MRSLGNP----------------------------------KELSEERRLAYVGITRARE 693 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +L + + S + + + ++ + + Sbjct: 694 KLYLTRAILRSAWGNPVTNPASRFLAEIPEDLIDWRREDSDSDLTGSWGAD 744 >gi|148544658|ref|YP_001272028.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016] gi|184154011|ref|YP_001842352.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112] gi|227363781|ref|ZP_03847888.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3] gi|325682992|ref|ZP_08162508.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A] gi|148531692|gb|ABQ83691.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016] gi|183225355|dbj|BAG25872.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112] gi|227071138|gb|EEI09454.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3] gi|324977342|gb|EGC14293.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A] Length = 757 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 118/813 (14%), Positives = 240/813 (29%), Gaps = 153/813 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V N + ++ L S + Sbjct: 31 GAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIWVST 90 Query: 66 FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKS 122 F L L + T + L +++ + + K R + + Sbjct: 91 FHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNA 150 Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 A LT + Y++ + N LDF+DLI+ T +LL+ Sbjct: 151 KNALLTPDDYSKEANSMFENMVARAYKLYQQELEANQALDFDDLIMKTIELLESD---QE 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L + + + L VGD QSIY Sbjct: 208 TLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKY----------QNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA +L + + + L ++RST IL ++V + + + Sbjct: 258 WRGANMNNILNFEHDYPQ--------AKTVMLEQNYRSTQTILNAANEVIANNLYRKKKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + S+ + + A+ Sbjct: 310 ---------------------LW-------TENGQGDKISYYRAQNEHDE-------AQF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I +K D +L R + ++ I Sbjct: 335 IVSKIKE---------EQEKHGYHFNDFAILYRTNAQSRMVEETF----LKSSIPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467 D I+D++A I++ D +SF ++ +P + + +E Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNTPKRGIGLTSVEHLRNFANENGWTLL 441 Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + +K + + L A++ + D IL + + Sbjct: 442 KAAQNVDTASEITARTRNKIDEFGQLMANLTKQAEYLTLTDLTEQILELSGYNKMLSNDR 501 Query: 522 GNE---VIDVLDEFLNFTLRNEQNS----YSSLQELISELEQYPPTIKRA-HSANHNEVR 573 E + LDEF + T ++ +LQ++I+ L + V Sbjct: 502 SLEAQARRENLDEFKSVTQEYDEQHKDDDDPNLQKIINFLADLALVSDQDNVDEQAPAVT 561 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 562 LMTLHAAKGLEFPVVFLVGMEEGIFPLSRALMEDDELEEERRL----------------- 604 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 YVG+TRA +L + + ++Y ++ Sbjct: 605 -----------------AYVGITRAKKKLYLT-------------NAFSRLLYGRIQRNQ 634 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + ++ +S + ++ P +R + ++ Sbjct: 635 PSRFVEEIDSELLQFENSPSGNSIKDSKLPFDRAAATAT-----TYRDQQKRTYRSAGKR 689 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786 + + +++ + +G ++ Sbjct: 690 VKPITNTGTGADKVGWKTGDKVEHKKWGQGTVV 722 >gi|312864740|ref|ZP_07724971.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415] gi|311099867|gb|EFQ58080.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415] Length = 764 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 107/633 (16%), Positives = 197/633 (31%), Gaps = 119/633 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+E +++ +DF+DLI+ T L + Q +I +DE QD Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDSNPD---VLAYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST IL + V + N + Sbjct: 272 -------AKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW Q+ + D + A +A TI + + Sbjct: 306 --LW-------TQNDEGQEIVYYQAHDERDE-------AVFVASTIDQEVRENRR----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 ----DFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ E ++ Sbjct: 397 IANTHDNISYERIVNEPKRGVGPGTLEKIRTFALEQNLSLLEASEQIMLSPIKGKAAQAV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + L S + +L + + E I+ ++EFL T Sbjct: 457 WDLANSLLNLRADLDNYSLTELVEAVLDKTGYLEALQVQNTLESQARIENIEEFLTVTKN 516 Query: 539 NEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 ++ + L +L L + EV +MT+H AKGLE PVVFL+ Sbjct: 517 FDENKDDAPEDEAGLDKLSRFLNDLALIADTDDGDVESAEVTLMTLHAAKGLEFPVVFLI 576 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 VF EE RL Sbjct: 577 GMEENVFPLS----------------------------------RAAEDPDELEEERRLA 602 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YVG+TRA + L + ++ + KSN + + + + + + + Sbjct: 603 YVGITRAEEVLYLTNANSRTLFGKSNYNRPTRFIREISDDLLDYQGLARPANSSFAATYR 662 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 T + L + ++ K Sbjct: 663 DSGETKFGQGMSLAQALQTRKAQAAPKSFATAR 695 >gi|160872129|ref|ZP_02062261.1| DNA helicase II [Rickettsiella grylli] gi|159120928|gb|EDP46266.1| DNA helicase II [Rickettsiella grylli] Length = 722 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 114/581 (19%), Positives = 201/581 (34%), Gaps = 118/581 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE +N V+DF +L++ + +L K I + HIL+DE QDT+ I Sbjct: 174 RLYQSYEEVCDRNGVIDFAELLLRSYELFIKHPE---ILHYYQGRFQHILVDEFQDTNRI 230 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ L+ S VGD+ QSIY + GA K + + Sbjct: 231 QYAWLKLLS----------SGKNYFMIVGDDDQSIYGWRGARVKNIYDFTHDFPEH---- 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II L ++RST IL + + + + G S+ Sbjct: 277 ----QIIRLEQNYRSTGVILAASNALITHNDGRLGKKLWSSR------------------ 314 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + F+ L + AR I I G K+ + Sbjct: 315 ----------GDGDKIALYGAFNDLDE-------ARFIINQIKQ----------GLKKEV 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 A DI +L R + ++ +I + IKD +A R I ++ Sbjct: 348 HANDIAILYRSNAQSRVLEEAL----IHAQIPYRIYGGLRFFERAEIKDALAYLRLIANR 403 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHV 484 DD F ++ +P + + K+ R + ++++ Q + + H Sbjct: 404 NDDPGFERVINTPTRGIGDQTLQKLRLEARTQALSLWQAATYLLNQQCLPSRAANALAHF 463 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 I+ I ++ + S + +L + G I+ L+E +N T + Sbjct: 464 IQLIDKMDEEIKTFSLAEQTEHVLYQSGLFNHYKKEKGERGQARIENLEELINATRQFIP 523 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E+++ S L ++ + + H V++MT+H+AKGLE P VFL +F Sbjct: 524 EESTLSILSSFLAHVALEAGE--HQANEQHACVQLMTLHSAKGLEFPWVFLCGMEEGLFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H + H + EE RL YVGMTRA Sbjct: 582 H----------------------------------HLSHEEPGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 +L + + + + +++ Sbjct: 608 RKLFLSYAEVRRLHGTESHHRPSRFISEIPKELVEEIRLRT 648 >gi|239916963|ref|YP_002956521.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] gi|281414579|ref|ZP_06246321.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] gi|239838170|gb|ACS29967.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] Length = 858 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 127/800 (15%), Positives = 237/800 (29%), Gaps = 128/800 (16%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-FFLTQK 77 P ++ NK + E I AQ + ++ ++ L Sbjct: 111 RARPHEILAITFTNKAAAEMRERVAGLIGPTAQRMWISTFHSSAVRLLRNEAANIGLKST 170 Query: 78 FTPQKN------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SL 127 FT + + T + + K + +++ + +T+A Sbjct: 171 FTIYDSADSLRLVTTVAKQHELDPKRFAPKALLNRISSLKNELVEADDYAATVAEGDPWG 230 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y ++ LDF+DLI T + + + + H+L+DE QD Sbjct: 231 RAVAAVYRDYTARLRQANALDFDDLIGMTVHMF---EAFPRVLDNYRRRFRHVLVDEYQD 287 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +IR L + + L VGD QSIY+F GA+ + ++ ++ Sbjct: 288 TNHAQYRLIRLLAGPAGDPEGVETPGGELTVVGDSDQSIYAFRGADIRNIVEFEQDF--- 344 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I+L ++RST IL + V + + Sbjct: 345 -----TDAVTIKLEQNYRSTQTILDAANAVIERNPDRRPKR------------------- 380 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW P + + +S E IA TI + D Sbjct: 381 --LW------TAEGEGPAIVGYAAENESAEAE--------WIAATIDRLQDED------- 417 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I+ D+ V R + + I D IKD +A R Sbjct: 418 --GIRPSDVAVFYRTNAQSRALEERL----VTRGIPYRVIGGTRFYDRKEIKDALAYLRV 471 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH---- 483 I++ +DD++ +L P + + + + + A Sbjct: 472 IVNPDDDVNVRRILNEPKRGIGDRAEGAVAAWAQRNRSTFSAALRDAEHAPGLAARSLKA 531 Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 ++ + +L +A+ P +L + D L E + Sbjct: 532 VNGFVQMMDDLAQVAETAGPATVLEAVLEQSGMLAALRESEDLQDESRADNLGELVAVVR 591 Query: 538 RNEQNSYSS-LQELISELEQYPPTIKRA---------HSANHNEVRIMTVHTAKGLESPV 587 E+ + L + + ++ + + +V +MT+HTAKGLE PV Sbjct: 592 SFEKTTPDGTLSDFLEQVALVADADQLPTAPDVEGEALAEAQGQVTLMTLHTAKGLEFPV 651 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VFL VF H + E Sbjct: 652 VFLTGMEHGVFPH----------------------------------ARSMTDEKELAEE 677 Query: 648 NRLLYVGMTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 RL YVG+TRA +L + S + + + + ++ + ER + S+ Sbjct: 678 RRLAYVGLTRARRRLFLTRAEARSLWGQHQFNPPSQFLGEIPEALIDWEREGTTRSAGSL 737 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NPSTID 763 + ++ P R Q++ + + PS + Sbjct: 738 SLTGAGTSRYAGRFGGGRPAWRSRDDDDGARPQRLTRGDEPADLTVPSAVVRGKAPSRVQ 797 Query: 764 TKGKTNLESLLSDNQTFNRG 783 + + S G Sbjct: 798 PQKEIVALSPGDRVSHATFG 817 >gi|329920500|ref|ZP_08277232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G] gi|328936176|gb|EGG32629.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G] Length = 742 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +E E + + L ++ + +L ++ + + Sbjct: 66 AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ + NI +++ + L + ++++ + + + + Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ K +C++DF+DLI+ T L K + + + +IL+DE QD Sbjct: 172 ---AIVYREYQKNLKHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ L + + + VGD QSIY + GA + +L ++ + Sbjct: 226 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RST IL + V +N + Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + A I I+ I Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D IKD+M+ R Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMSYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481 + + D +S ++ +P I F+ + + K Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + + + E+I A+ + + IL + E + LDEFL T + Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521 Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + + + + L + + + N ++V +MT+H AKGLE PVVFLV Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F S EE RL YVG Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607 Query: 655 MTRASDQLIIC 665 +TRA QL + Sbjct: 608 ITRAKKQLYLT 618 >gi|256839771|ref|ZP_05545280.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13] gi|256738701|gb|EEU52026.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13] Length = 778 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 131/697 (18%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150 +L Q ++ TY ++ + L + + Y+ + +DF+ Sbjct: 136 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 195 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN L + + K ++L+DE QDT+ Q +++ L E Sbjct: 196 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 243 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIYSF GA +L+ K + I +L ++RST +I Sbjct: 244 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 294 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + + + +T Sbjct: 295 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 327 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 SY D + +A I+ M G D +L R + ++ Sbjct: 328 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 371 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD+++ R I++ D+ + ++ P + Sbjct: 372 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRIINYPTRGIGD 427 Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ +++ EY N K I I + S + Sbjct: 428 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 487 Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553 TL++ E + L E L E ++ + ++E Sbjct: 488 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 547 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + N ++V +MTVH AKGLE VF+V +F K Sbjct: 548 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 600 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 EE RL YV +TRA ++ + Sbjct: 601 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K++ T + D D + + + A E +P + ++ Sbjct: 633 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 689 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + + S + L Sbjct: 690 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 726 >gi|289577825|ref|YP_003476452.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9] gi|289527538|gb|ADD01890.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9] Length = 711 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 104/555 (18%), Positives = 188/555 (33%), Gaps = 112/555 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+D+II T +L K+ + ++ +I++DE QDT++ Q+ + L + + Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKY 239 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 R L VGD+ QSIY + GA+ +L ++ + +I+L + Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVGNILNFEKDYPE--------AKVIKLEQN 281 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL + V + + LW + Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 313 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + + I N+ + +D +L R Sbjct: 314 GEKIILCELENEREEAE-------FVIQEIINLKERENR---------SFRDFAILYRTN 357 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + +I D IKD++A R +++ DD+SF ++ Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500 P I + + +++ I +K ++I ELI + Sbjct: 414 PKRGIGAATIEALEATASEKDTSLFFAIDNAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473 Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556 + IL ++ + + L+EFLN E+ + SL+ +S + Sbjct: 474 SEVIKYILEETGYIEELKREESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLSGITL 533 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 V +MT+H+AKGLE PVVF+V VF Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS---------------- 575 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + EE RL YVG+TR+ ++L + + KS Sbjct: 576 ------------------FKSFTDEHELEEERRLCYVGITRSKEKLYLTYARRRNLYGKS 617 Query: 677 NQRTWYDMVYDSFHN 691 T+ + + Sbjct: 618 QYGTYSRFISEIPER 632 >gi|313903519|ref|ZP_07836910.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM 13965] gi|313466340|gb|EFR61863.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM 13965] Length = 791 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 101/596 (16%), Positives = 181/596 (30%), Gaps = 115/596 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + A Y++ ++N +DF+DL++ LL + + + + HIL+DE QDT+ Sbjct: 168 VAMVYAAYQQRLERNGAMDFDDLLMQAVRLL---EEAPDVLAYYQRRFVHILVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++R L R LF VGD QS+Y + GA+ +LR + Sbjct: 225 HAQYRLLRLLAA----------GHRNLFVVGDPDQSVYRWRGADITNILRFEEDYP---- 270 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++ L L++RSTA IL V + S Sbjct: 271 ----DARVVRLELNYRSTASILGAAQAVIEHNTQRKEKQLRSVH---------------- 310 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + D + A +A + + Sbjct: 311 ------------GEGARVVVFGAADEHDE-------AWFVAREMERLHAEGH-------- 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + ++ VL R + ++ I + +KD++A R + Sbjct: 344 --EYGEMAVLYRTHAQSRVVEETL----LRRGIPYRIVGGLKFYERKEVKDILAYLRLAV 397 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKFQ 482 + ED +S ++ P E + ++ + Sbjct: 398 NPEDRISLRRVINVPRRGIGEATLARLEAYLDREGAGLLEALAAAETIPGITRPQAAALL 457 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 I +L A+ +D L L R+ + + + L E L+ Sbjct: 458 AFGGVIADLRAAAENRPAYDVIALALERTGYREMLEQEQTPDAMTRLENLKELLSVARDF 517 Query: 540 EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ L+ L + + V +MT+H+AKGLE VVF+ VF Sbjct: 518 ERQRGPGDAPLVDFLAEVALVSDVDQLEEGARAVSLMTLHSAKGLEFDVVFITGMEEGVF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H EE RL YVGMTRA Sbjct: 578 PHSRSLDDP----------------------------------QELEEERRLCYVGMTRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +L +C + + ++ + ++ + + + W Sbjct: 604 RQRLYLCFTRQRTLFGATRRQVPSRFLEEADERYLEWQGLPPGGGDPDLDEEEPLW 659 >gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis L2-32] gi|154083989|gb|EDN83034.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis L2-32] Length = 896 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 119/726 (16%), Positives = 221/726 (30%), Gaps = 123/726 (16%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P + +S + + I L+ + Sbjct: 87 AAAEMRERLVTLVGPEAEHMWISTFHSACVRILRRDGKEI-----GLKSGFSIYDTADS- 140 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR-DRFNTYKMFKSTLA 125 L K + + K D K L +D+ K D + ++ + Sbjct: 141 ERLVKLIAADLNIDTKRYTPRMLLGKISDCKNALVSWKDQLKKANCDYIPGQRGYQVSAG 200 Query: 126 SL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 + L + A Y+ +DF+DLI+ T +LL+ + +I +DE Sbjct: 201 DVDELVAVVYAEYQHRLALANAVDFDDLIMRTVELLQT---CPQVSEYYRHRFRYIFVDE 257 Query: 185 VQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 QDT+ Q+ ++R L+ D P + VGD QSIY+F GA+ + + Sbjct: 258 YQDTNHAQYVLVRELSGIDSDEQPDPQARGAGRVGPSWITVVGDSDQSIYAFRGADIRNI 317 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 ++ I L ++RST IL + V + EN + Sbjct: 318 QDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK--------- 360 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 LW + +A A IA I+ + Sbjct: 361 ------------LWTALGQGDKIVGYAA--------------DNAQQEAGWIANEIARIH 394 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + + +DI ++ R + + + + + Sbjct: 395 TEE---------DVAYRDIAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERRE 441 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFAN- 475 +KD +A + I++ D+++ +L P T +E I+ Sbjct: 442 VKDAIAYLQAIVNPADNVNVRRILNVPKRGLGARAEGLVAGYADAHGLTFFESIEHMDQI 501 Query: 476 -----CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 +HEL A P + +L ++ + Sbjct: 502 EGMTGRTTKPLGAFRDLMHELADFAKEHDSKPSEVVAEVLDKSGLLEELQRSEDPQDASR 561 Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583 +D L + + EQN+ +L + + + + +V +MT+HTAKGL Sbjct: 562 VDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGEGEDSGKVTMMTLHTAKGL 621 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P VFL F H+ S Sbjct: 622 EYPYVFLTGMEQGTFPHQ----------------------------------RAMEDTSE 647 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E RL YVG+TRA +L + + + + ++N + + K+ + Sbjct: 648 LSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMPSQFLDEIPDELIDWKRREAGVE 707 Query: 704 INKDEW 709 + W Sbjct: 708 RMRASW 713 >gi|309803805|ref|ZP_07697890.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 11V1-d] gi|312873066|ref|ZP_07733125.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1] gi|308164039|gb|EFO66301.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 11V1-d] gi|311091299|gb|EFQ49684.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1] Length = 742 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +E E + + L ++ + +L ++ + + Sbjct: 66 AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ + NI +++ + L + ++++ + + + + Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ + +C++DF+DLI+ T L K + + + +IL+DE QD Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ L + + + VGD QSIY + GA + +L ++ + Sbjct: 226 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RST IL + V +N + Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + A I I+ I Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D IKD+MA R Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481 + + D +S ++ +P I F+ + + K Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + + + E+I A+ + + IL + E + LDEFL T + Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521 Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + + + + L + + + N ++V +MT+H AKGLE PVVFLV Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F S EE RL YVG Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607 Query: 655 MTRASDQLIIC 665 +TRA QL + Sbjct: 608 ITRAKKQLYLT 618 >gi|229826175|ref|ZP_04452244.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC 49176] gi|229789045|gb|EEP25159.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC 49176] Length = 768 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 100/578 (17%), Positives = 200/578 (34%), Gaps = 109/578 (18%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + + YE+ K N LDF+D+++ T +L + + +IL+DE QDT Sbjct: 168 VYARVYSEYEKRMKNNNALDFDDILVKTVELFQTD---KDTLEYYQRRFRYILVDEYQDT 224 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 +++Q+++++ L L VGD+ QSIY F GA+ + +L ++I Sbjct: 225 NIVQFKLLKLLANYV---NEDGEIENNLCVVGDDDQSIYKFRGADIRNILNFEKIYPNAL 281 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +I+L ++RST +IL + V S + + Sbjct: 282 --------VIKLEENYRSTGNILEAANGVISNNKERKDKR-------------------- 313 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW S+ S+ +Y + A +A T+ + Sbjct: 314 -LW-------TSKEGGASISYKTYDTGERE-------ANGVANTVLRTVNEG-------- 350 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + DI VL R + I I IKD++A + I Sbjct: 351 -KAKYSDIAVLYRTNAQSRAIEEKF----IYSNIPYKLYGGTNFYSRKEIKDILAYLKTI 405 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA-----NCGISKFQ 482 + +DD +L P KI + + +E + + ++K + Sbjct: 406 NNPKDDTQVRRILNVPKRGIGSATEDKIADYALEKEISFFEACMRVQSIPGLSRAVAKVE 465 Query: 483 HVIKYI-HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + +I ++ ++ ++ +E + ++E +N Sbjct: 466 KFVAFIGAKIREFKDTVCMKAEVEALIEEIGYIEELKLEGTDEAQGRIENIEELINKVAI 525 Query: 539 NEQNSYSS----LQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDT 593 E + + L ++++ + + ++V +MT+H+AKGLE +VF+V Sbjct: 526 FELGNQDAGDIKLGNFLADVSLATDADNKDSENKDADKVTLMTLHSAKGLEFKIVFIVGM 585 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F + + + +S EE RL YV Sbjct: 586 EEGLFPSRMC--------------------------------LFAMDESELEEERRLCYV 613 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 G+TRA ++L + ++ + + + Sbjct: 614 GITRAMEKLYLSNAASRMLRGDVQWNAPSRFIGEIPEH 651 >gi|325479235|gb|EGC82331.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus prevotii ACS-065-V-Col13] Length = 731 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/565 (17%), Positives = 182/565 (32%), Gaps = 118/565 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YEE K LDF+DLI L K + ++ ++ +DE QDT+ Sbjct: 169 EIYKKYEEKKFYYNALDFDDLIDKVLYLFSKDIET---LKFYQEKFQYVFVDEYQDTNNS 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E+I+ + + VGD QSIYSF GA+ +L ++ Sbjct: 226 QYELIKYFSGF----------HNNITVVGDADQSIYSFRGADISNILNFEKDF------- 268 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + +I+L ++RST IL + + + + + + Sbjct: 269 -KDADVIKLEQNYRSTDKILDTANVLIENNSERKDKNLWTDNKNGSKPIYRS-------- 319 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S A+ + I + + Sbjct: 320 ---------------------------TNVESEEAKFVLDNIKEL----------TYQGY 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 AKD +L R + + I+ D IKDL++ + I++ Sbjct: 343 DAKDFAILYRTNAQSRSFEEIL----MKNLINYKVIGGLKFYDRKEIKDLVSYLKIIVNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484 +DDL+ ++ P I ++ + + + E+ + Sbjct: 399 KDDLALKRIINEPKRGIGNKSIAELESISSLHEISMLDLIRLDEFRPLLNDRLKKLADKF 458 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 + ++ + D +L + + + E ID ++EF++ E+ Sbjct: 459 YMPLKDIFDNIEKYKIVDLINEVLDKSGYLKMLETSYSVEDRSRIDNINEFISSAAEYEE 518 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + LE + + + V +MT+H AKGLE P+VF+V +F Sbjct: 519 ENSDD--TIFDYLENLSLLSDLDKTEDKDNSVSLMTMHAAKGLEFPIVFVVGLDEGLFPG 576 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + EE RL YVG+TRA + Sbjct: 577 KRSID-----------------------------------EGNVEEERRLFYVGITRARE 601 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMV 685 +L + + N K V Sbjct: 602 KLFLTSSKSRRNYGKPIFYKPSRFV 626 >gi|56477926|ref|YP_159515.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1] gi|56313969|emb|CAI08614.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1] Length = 740 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 113/693 (16%), Positives = 218/693 (31%), Gaps = 116/693 (16%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L S + K ++ + +N + + Q ++ Sbjct: 100 LRAHHRDAGLPQLFQILDSG---DQLAAIKRLL-KALNVDDEKFPPR--ELQHFINGQKE 153 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ L YE ++ V+DF +L++ T +LL++ + IR Sbjct: 154 AGLRPHAVEAWDDYTRRRVELYIEYESQCQRESVVDFAELLLRTYELLERNE---PIRKH 210 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 Q HIL+DE QDT+ +Q+ ++ L + LF VGD+ QSIY F GA Sbjct: 211 YQQRFRHILVDEFQDTNRLQYRWLKLLAD------TGRDGAAKLFCVGDDDQSIYRFRGA 264 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + +R ++I L ++RS +IL + + G + Sbjct: 265 DVGNMRDFEREFH--------VANVIRLEQNYRSHGNILDAANAIIRHNAGRLGKN---- 312 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + + AR I Sbjct: 313 -----------------LWTERGAGEPIRVFEACGDLD--------------EARWIVDE 341 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I +++ + I +L R + ++ IS Sbjct: 342 IQSLVRDG----------MSRSGIALLYRSNAQSRVLEHQL----FSSGISYRVYGGLRF 387 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471 + IK +A R I + +DD +F ++ P I + R ++Y + Sbjct: 388 FERQEIKHALAYLRLIANPDDDTAFSRVVNFPTRGIGARSIEALQDAARTWNSSLYAAVP 447 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530 A + ++ + +L + +L R F + G E ++ LD Sbjct: 448 HVAGKPGTVLAQFVRLVEDLRRDTAKLPLPELVDHVLDVSGLRNHFRNEKEGQERLENLD 507 Query: 531 EFLNFTLRN-------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKG 582 E +N + L L + A + V++MTVH++KG Sbjct: 508 ELINAAANFVAEAGVQADAQDMAHALLADFLAHASLEAGEHQADAGSDAVQLMTVHSSKG 567 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE VFL +F H++ ++ Sbjct: 568 LEFDAVFLSGLEEGLFPHENS----------------------------------IMETE 593 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 EE RL+YV +TRA +L + + ++ + + + Sbjct: 594 GLEEERRLMYVAVTRARQRLYLSFAQSRMLHGQTRYNLRSRFLEEIPEELTKWLSPPNPR 653 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735 + + E+ + + D Sbjct: 654 TSAVRSGFGGYYQPSRGGVVAKAPEQPVSRSRD 686 >gi|297544110|ref|YP_003676412.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841885|gb|ADH60401.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 711 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 104/555 (18%), Positives = 188/555 (33%), Gaps = 112/555 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+D+II T +L K+ + ++ +I++DE QDT++ Q+ + L + + Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKY 239 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 R L VGD+ QSIY + GA+ +L ++ + +I+L + Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVGNILNFEKDYPE--------AKVIKLEQN 281 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL + V + + LW + Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 313 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + + I N+ + +D +L R Sbjct: 314 GEKIILCELENEREEAE-------FVIQEIINLKERENR---------SFRDFAILYRTN 357 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + +I D IKD++A R +++ DD+SF ++ Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500 P I + + +++ I +K ++I ELI + Sbjct: 414 PKRGIGAATIEALEATALEKDTSLFFAIDNAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473 Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556 + IL ++ + + L+EFLN E+ + SL+ +S + Sbjct: 474 SEVIKYILEETGYIEELKREESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLSGITL 533 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 V +MT+H+AKGLE PVVF+V VF Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS---------------- 575 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + EE RL YVG+TR+ ++L + + KS Sbjct: 576 ------------------FKSFTDEHELEEERRLCYVGITRSKEKLYLTYARRRNLYGKS 617 Query: 677 NQRTWYDMVYDSFHN 691 T+ + + Sbjct: 618 QYGTYSRFISEIPER 632 >gi|91201897|emb|CAJ74957.1| similar to ATP-dependent DNA helicase subunit AddA [Candidatus Kuenenia stuttgartiensis] Length = 1198 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 146/895 (16%), Positives = 288/895 (32%), Gaps = 87/895 (9%) Query: 37 LSMETGNPTILKKAQTLQQASQT-----QCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91 + K LQ+ S L F + ++ Sbjct: 273 ALLLKCGKPDNKLLLQLQEFLTIFNELKTQGFHYLSSLHYNFGKTISKAKSGWEEADVL- 331 Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151 + + + + T A L + + + F+ Sbjct: 332 -------VAQDIVKKCRILLRKLQRVDESFITTAL-NLVLPFCKTFRQTYLSQGYISFDG 383 Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE----DFFVGK 207 L+ +LL+ + IR + + + IL+DE QDT IQ+++I L+E Sbjct: 384 LLTLARNLLQNNAYRS-IRTSLKKNFSAILVDEFQDTDPIQYDIILFLSEMVNHHSDTIH 442 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 P LF VGD KQSIYSF A+ + + + + L +FRS Sbjct: 443 GIPLEPGKLFIVGDPKQSIYSFRRADIE-------AYEHVVKQICNNEAPLSLLENFRSH 495 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 + I+ V+ +F ++ + + + + Q Sbjct: 496 SGIVNAVNDLF------GEKIITEQQGLQ--------PKYIPIHAKRIQSDPFQRIEIIS 541 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMI----GTDTIFSNGKKRVIQAKDILVLVRKR 383 + + L E++ A IA I N + G DT ++ KDI +L+R Sbjct: 542 VSDTNGEELTAEAAREAEADWIAKWIKNNVFYDNGGDTSADAATSYKLKYKDIALLLRSF 601 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + + I + + D M L R I + D ++ V L+S Sbjct: 602 TQIRPYVESFKE----HDIPFIAEGEKYFYTTQEVIDFMNLLRTIENPYDTIALVGTLRS 657 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503 P ++++I+ + + Y + ++ + ++ Sbjct: 658 PFAGLTDNEIYLL---KINDLLDYRKTISDNIDIDATIGDFYSFLRKYNVRSRIIPVSHL 714 Query: 504 FTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQY 557 + I+ + + G + + L +F + EQ SL+ I+ + E Sbjct: 715 ISEIINDPRFAGITASAWQGEQKLANLKKFYRTACKLEQIQGISLKHFINNMKKYIDEAR 774 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + V+I+T+H +KGLE PVV L + + G Sbjct: 775 EEGESPLSDETLDVVKILTIHKSKGLEFPVVILGNLHGEAKKENETLDSVAFDWNTSTTG 834 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--- 674 I + + + RN L + + T EE R+LYV MTRA ++LI+ +++ Sbjct: 835 IVLGKGEQQLRNLQSIILENKINERTWEEEKRVLYVAMTRAKERLILTGALKDNDKSYIG 894 Query: 675 --KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + YD+ ++ K+ ++ + ++ + + Sbjct: 895 LIMKSLSDAYDISLNNEPETPSGHVRKIVFGNSEIFLENFNYTGARRFVSKTAEKTWDID 954 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK-----------GKTNLESLLSDNQTFN 781 +I + + +P +PS + + K + + Sbjct: 955 WNSFVRIWNDRKQSMFAETEKPLFTSPSALSEEISPVHYETPTHNKHINSAEIQQEYAAA 1014 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MT 838 G + H++L+ + Y + + +L +I L++ +T Sbjct: 1015 IGSLCHQILEKWDF-----QGTLQALYDLITSSVTIHFTNASLHHTIIHLIKTEAVTILT 1069 Query: 839 TAMSCDSYSEVSV------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 +Y+E+ I + I+ G ID I + I I +YKT + Sbjct: 1070 AFFHSKAYNELKNARILGREIPILLHWEGQIMRGTIDIIYEFENQIIIADYKTDY 1124 >gi|223986797|ref|ZP_03636779.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM 12042] gi|223961230|gb|EEF65760.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM 12042] Length = 721 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 95/539 (17%), Positives = 177/539 (32%), Gaps = 109/539 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + +Y ++ LDF+DL++ T + ++ A I+ K Q ++I +DE QD Sbjct: 170 AKVYEYYVNRQQAIYALDFDDLLLYTVRMFRQ---FAEIQAKWVQRFHYIHVDEFQDIDK 226 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+++I+ L + +++ VGD Q+IY++ GA+ ++ ++ Q Sbjct: 227 IQYDLIQLLAGND----------NSVYVVGDPDQTIYTWRGADVNIIMNFEKDYQ----- 271 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST IL + + N ++ + G Sbjct: 272 ---PCETIVLNENYRSTPSILNGANALIHNNRNRVEKDLFTSRPDNGAITHYSSAG---- 324 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 A IA I+ + Sbjct: 325 -------------------------------EEYEATWIACKINELHKQGQ--------- 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +D +L R + + + +I V + IKD + R + Sbjct: 345 -RYRDCAILYRSNYLSRALEKAM----IEQRIPYVIYGGIKFYERAEIKDALCYLRMVCG 399 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIK 486 D L+ + ++ P + I + ET + + K Q + +K Sbjct: 400 SND-LALMRIINVPRRGLGNKTMDTIVQRARETGKTMYEVIRDEKVVSGKAQTTIDNFVK 458 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546 + + ++A +IL R + NE ++ L E + N S Sbjct: 459 MVEKWKNLAPSTPISRLLEMILLDSGYRSMLEADKENERLENLKELITDIESYTVNYPDS 518 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L L+ + + V++MTVH AKGLE VF+ +F + Sbjct: 519 --SLEEYLQLVSLYGDKGAEDGGDHVQLMTVHAAKGLEFDTVFVYGMSEGIFPNDR---- 572 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++ + EE RL YV TRA ++L + Sbjct: 573 ----------------------------AMQESQLKGLEEERRLAYVAFTRAQNKLYLT 603 >gi|319792357|ref|YP_004153997.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315594820|gb|ADU35886.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 808 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 106/582 (18%), Positives = 196/582 (33%), Gaps = 137/582 (23%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE ++ V+DF +L++ + +LL+ D +R + HILIDE QDT+ + Sbjct: 182 ELYQLYEEQCQREGVVDFGELMLRSYELLRDND---PVREHYQRRFRHILIDEFQDTNRL 238 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I+ L+ + G+ T + ++ AVGD+ QSIY+F GA + R + Sbjct: 239 QYAWIKMLSGNTVGGQFTPNPNNSVIAVGDDDQSIYAFRGARVGNMADFVREFDVQ---- 294 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS ++IL +++ S + G + Sbjct: 295 ----HQIKLEQNYRSYSNILDSANELISHNKKRLGKNL---------------------- 328 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + D + S D A+ + + ++ Sbjct: 329 -----RTDQGPGEPVRVYESPTDLAE--------AQWMVEEMRQLVRDG----------F 365 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 K+I VL R + +I + + + IK +A R + ++ Sbjct: 366 DRKEIAVLYRSNAQSRVIETAL----FNASVPYRVYGGLRFFERAEIKHALAYLRLLENK 421 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 +DD SF+ ++ P + + R ++++ + + + I Sbjct: 422 DDDTSFLRVVNFPPRGIGARTLETLQDAARAAGRSLHDAVSVVGGKAGANLTGFVAKIDV 481 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN---------- 539 L Q S + L+L + + + R G + ++ LDE +N Sbjct: 482 LREQTQGVSLREIIELVLDHSGLVEHYKADREGADRLENLDELVNAAESFVTQEGFGRDA 541 Query: 540 ------------------------------EQNSYSSLQELISELEQYPPTI-KRAHSAN 568 + + +L L + L A Sbjct: 542 VALPVDELRQSPASQGIDPTRPVLDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAG 601 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V++MTVH AKGLE VF+ +F H++ Sbjct: 602 QDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDF--------------------- 640 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + EE RL+YV +TRA +L + Sbjct: 641 -------------ESLEEERRLMYVAITRARKRLYLSHSQTR 669 >gi|312130397|ref|YP_003997737.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132] gi|311906943|gb|ADQ17384.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132] Length = 757 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 111/687 (16%), Positives = 216/687 (31%), Gaps = 121/687 (17%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + A + + Y +DF+DL+ NTN L + + K + Sbjct: 163 AAEDIAAQMPELGRIYKTYALRCFSANAMDFDDLLFNTNVLFRDH---LDVLNKYQHKFR 219 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 H+++DE QDT++ Q+ + R L + + VGD+ QSIY+F GA + +L Sbjct: 220 HVMVDEFQDTNISQYLITRKLAA----------VSQNICVVGDDAQSIYAFRGANIQNIL 269 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 K+ +++L ++RST +I+ + V + + + S Sbjct: 270 NFKKDYP--------DLKVVKLEQNYRSTKNIVNAANSVIAKNKAQLEKNIFS------- 314 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 D++ + E + D+ R IA+ I Sbjct: 315 --------------------DNEEGEKIEVIRAMSDNEEG--------RLIAHEI----- 341 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G+ R ++ D +L R + R I I Sbjct: 342 -----FEGRLRGLKNSDFAILYRTNAQSRAFEEALR----KIDIPYRIIGGLSFYQRKEI 392 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG 477 KD++A RF ++Q+D+ +F ++ +P + + KI +++ + Sbjct: 393 KDILAYLRFTVNQQDEEAFKRIINTPKRGIGDTSVAKIIVLASEHQTSIWNIVSNIQFYM 452 Query: 478 ISKFQHVIKYIHELI-----HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 + + + +LI + + H + + E + + Sbjct: 453 EGRTANAVAGFADLIKSYTVMMEEGKDAHTLAMHVAKTSGLLHELYMDKTVEGVARHENV 512 Query: 530 DEFLNFTLRN---EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 E LN ++N SL + + + +V +MT+H AKGLE Sbjct: 513 QELLNSIRSFVDNDENEDKSLSSFLQTVSLLTTADEDDDGDAE-KVTLMTIHGAKGLEFK 571 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + + K + EE Sbjct: 572 HVFVVGLEENLFPSQMMLKS----------------------------------RDDLEE 597 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA QL + K + + R + + Sbjct: 598 ERRLFYVAITRAEKQLTLSYAQQRYTWGKLTYCEPSRFLEEIDSRYLRFGDKGIPQTFEP 657 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + P++R + L Q + + ++ L + Sbjct: 658 SFAPKKQATRPVVIGEPVKR-ASANALKPVQPPVQAHVPSADFEPSDTSKLKVGD-KVEH 715 Query: 767 KTNLESLLSDNQTFNRG-LIIHKLLQV 792 + + + F+ G H L + Sbjct: 716 QKFGFGEVKKLEAFS-GSTKAHILFER 741 >gi|298375530|ref|ZP_06985487.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19] gi|298268030|gb|EFI09686.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19] Length = 778 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 131/697 (18%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150 +L Q ++ TY ++ + L + + Y+ + +DF+ Sbjct: 136 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 195 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN L + + K ++L+DE QDT+ Q +++ L E Sbjct: 196 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 243 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIYSF GA +L+ K + I +L ++RST +I Sbjct: 244 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 294 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + + + +T Sbjct: 295 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 327 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 SY D + +A I+ M G D +L R + ++ Sbjct: 328 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 371 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD+++ R I++ D+ + ++ P + Sbjct: 372 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRMIVNPHDEEALKRIINYPTRGIGD 427 Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ +++ EY N K I I + S + Sbjct: 428 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 487 Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553 TL++ E + L E L E ++ + ++E Sbjct: 488 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 547 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + N ++V +MTVH AKGLE VF+V +F K Sbjct: 548 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 600 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 EE RL YV +TRA ++ + Sbjct: 601 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 632 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K++ T + D D + + + A E +P + ++ Sbjct: 633 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 689 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + + S + L Sbjct: 690 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 726 >gi|59711189|ref|YP_203965.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri ES114] gi|59479290|gb|AAW85077.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri ES114] Length = 1208 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 142/890 (15%), Positives = 284/890 (31%), Gaps = 145/890 (16%) Query: 113 RFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + L+LA ++AK++ L F+DL+ + + +A + Sbjct: 321 DDFLAQSLEIKQPLLSLAIHRCRKTLQQAKEQKNWLSFDDLLTQLSQA-TENQDNALLLE 379 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 KI ++ LIDE QDT +Q+ + +L +D LF +GD KQ+IY+F G Sbjct: 380 KIREQYPVALIDEFQDTDPLQYSIFSTLYQD--------QPQCGLFMIGDPKQAIYAFRG 431 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED- 290 A+ ++ +R Q L ++RSTAD+++ V+++F + +D Sbjct: 432 ADIFTYIQARR----------QVVDHYTLDTNWRSTADMVSSVNRIFEHGKQPFLYDDDI 481 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF---DSLPQESSASILAR 347 +++ Q D+ P W + + + S ++A Sbjct: 482 PFYPVKYNPVNAEQKSW---------ALDNHTQPAMTFWLQESKDGNPVNKTSYQRVMAE 532 Query: 348 RIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A I ++ G+ + + KK+ I+A DI VLVR K+ L+ L Sbjct: 533 STAAQIQTILTGAQQGSAYLQNGEKKQAIKAGDIAVLVRTGKEGKLVRE---ALSKQGIA 589 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 SV ++R + KD++ L + ++ D + L S LF ++ D + + + Sbjct: 590 SVYLSNRDSVFSSPLAKDVLRLLQAAMTPTDARAVRSALASSLFAYTADQLHQFNVDEMQ 649 Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 ++ + Q I+ + ++ ++ G Sbjct: 650 ------------------WEQAVNEFRAYRKHWQQRGIMPMLHQIITQQGISERLLAENG 691 Query: 523 NEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIM 575 E + E L T + + Y L+ L + + + N V+I+ Sbjct: 692 GERQLTDLLHIGELLQQTSQTLDSDYGLLRWLSDSISEPNGDSEEQTVRLESERNLVQIV 751 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE +VFL K + + S Sbjct: 752 TIHKSKGLEYDLVFLPFVCLYRAVDKKGEVSFYDEDNRYSVLDLLKEDDSV--------- 802 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + +K E RL+YV +TRA I KK + + Sbjct: 803 -EKAEKERLAEDLRLIYVALTRAVYACYIGMAPITKGISKKPPTGVHLSGLGYLIQQADE 861 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHP--------ENTPLEREETIKQLMDEQKIPKKLFSP 746 +L + K P + E E + E + Sbjct: 862 CNVEELQACLEKLIVGNSPMVIQSPQTIIDELYQEVQDEHIELYANKLIEPVKSNWWMTS 921 Query: 747 IKNDINE------------PYILNPSTIDTKGKTNLESL---LSDNQTFNRGLIIHKLLQ 791 + + ++ + + +LE + + G +H L + Sbjct: 922 YSGLVKQGNHHNDTSLELINLDIDSAEDKDDKELDLEPERTIFTFPRGARAGTFLHSLFE 981 Query: 792 VIFTLPEHKRKN---FITSYCTKNAKLWPAKEYKNLLLSITRLLENP------MMTTAMS 842 + + I K + A+ + + + R+L+ P + + Sbjct: 982 EVEFTQPITSEENTQIIIKLLEKE--NYDAEWLEVVQTMMQRVLDCPLDGENLRLASKGP 1039 Query: 843 CDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQN 877 E+ I ++ + G ID + + Sbjct: 1040 TQRLVEMEFLLPIELLNSSLVNKTIAKHDEVSARAGELGFSTVSGMLKGFIDLVFEHEGK 1099 Query: 878 IFIFEYKTHHHVPQEI--------EHIPY-THIAQLSIYEKILKDSYPNK 918 ++ ++K++H E + + Q +Y L ++ Sbjct: 1100 YYVLDWKSNHLGDSPECYGGESLVEAMRDHRYDFQYQLYALALHRFLKSR 1149 >gi|16800937|ref|NP_471205.1| ATP-dependent DNA helicase [Listeria innocua Clip11262] gi|16414372|emb|CAC97101.1| ATP-dependent DNA helicase [Listeria innocua Clip11262] Length = 731 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 102/567 (17%), Positives = 187/567 (32%), Gaps = 115/567 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF 241 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + L VGD QSIY + GA+ ++ ++ I L + Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYP--------SAKTILLEEN 283 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL ++V N + + LW S Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I + + D +L R Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTN 359 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + ++ ++ D IKD++A R I + EDD+S ++ Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 415 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497 P + K+ +++E + + + + F Sbjct: 416 PKRGVGPGTLEKLNNVAAAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDF 475 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553 S + IL R + E + +DEFL+ T E+ + +L +++ Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLLAFLTD 535 Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL YVG+TRA ++L + + Sbjct: 586 ------------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRM 621 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELGNE 648 >gi|223932458|ref|ZP_03624460.1| ATP-dependent DNA helicase PcrA [Streptococcus suis 89/1591] gi|223898912|gb|EEF65271.1| ATP-dependent DNA helicase PcrA [Streptococcus suis 89/1591] Length = 759 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 183/589 (31%), Gaps = 118/589 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 166 QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPE---VLTYYQQKFQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPES 272 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST ++L ++V N + Sbjct: 273 --------KVVLLEENYRSTKNVLQAANEVIENNRNRRPKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ D + A +A I + Sbjct: 306 --LW-------TQNAQGDLITYYRARDENDE-------AIFVAGQIDQLHREGKA----- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 345 -----YKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNI 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + K+ + ++ E Q Sbjct: 396 IANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPIKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + ++ L + + +L ++ E + + EFL+ T Sbjct: 456 FDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQEFLSVTKN 515 Query: 539 NEQNSYS----SLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ L L L + +EV +MT+H AKGLE PVVFL+ Sbjct: 516 FDEKDTEEEETGLDRLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIGM 575 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF + RL YV Sbjct: 576 EENVFPLSRAAEEEDELEEER----------------------------------RLAYV 601 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 G+TRA L + ++ ++N + + + + + Sbjct: 602 GITRAEQTLYLTNANSRLLFGRTNYNQPSRFIREISSDLLDYQGLARPA 650 >gi|121587578|ref|ZP_01677344.1| DNA helicase II [Vibrio cholerae 2740-80] gi|229527306|ref|ZP_04416699.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)] gi|121548216|gb|EAX58286.1| DNA helicase II [Vibrio cholerae 2740-80] gi|229335314|gb|EEO00798.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)] Length = 723 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 118/690 (17%), Positives = 222/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ T +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N S ++ I+ L H + + + G Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|311107257|ref|YP_003980110.1| DNA helicase II [Achromobacter xylosoxidans A8] gi|310761946|gb|ADP17395.1| DNA helicase II [Achromobacter xylosoxidans A8] Length = 764 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 114/673 (16%), Positives = 214/673 (31%), Gaps = 143/673 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L +T + K ++ + Q ++ Sbjct: 94 LRAHHRDAGLPQSFQILD---VTDQLAAIKRLMKANGVDDEKYPP---RDVQRFINGAKE 147 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ A + YE + V+DF +L++ +LL + A +R Sbjct: 148 EGLRPADVEAYDAHRRRLIEIYQLYEAQCLREGVVDFAELLLRAYELLSRN---APVREH 204 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+ +Q++ +R L +FAVGD+ QSIY+F GA Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGAAIFAVGDDDQSIYAFRGA 254 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R + ++I L ++RS IL + + G + Sbjct: 255 NVGNMADFERDYAR--------GTVIRLEQNYRSFGHILDSANALIGHNTGRLGKN---- 302 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW Q + + + ++ S + A+ I Sbjct: 303 -----------------LW-------TEQGDGEPV-------RVIEQPSDGMEAQWIVDE 331 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++I ++ ++I VL R + ++ I Sbjct: 332 IRSLIREGSLR----------REIAVLYRSNAQSRVLEHAI----FSAGIPYKVYGGLRF 377 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + IK +A R + + DD S++ ++ P + ++ R ++Y + Sbjct: 378 FERQEIKHALAYLRLMANPHDDTSWMRVVNFPTRGIGARTLEQLGDAARAHDTSLYAAVA 437 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 G S + IH LI + + +L A + + R G E ++ L+ Sbjct: 438 LVPGKGGSNLAQFAQLIHRLIEETRDLPLPEMVEHMLEASGLNAHYKAEREGAERLENLN 497 Query: 531 EFLNFTLRNEQNS------------------------------YSSLQELISELEQYPPT 560 E + L L + L Sbjct: 498 ELITAAAVFASEENYDGMPAGVVPEQDTASTLNAGVVDAPIVASDGLTPLAAFLSHAALE 557 Query: 561 I-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + V++MTVH AKGLE VF+ +F H++ Sbjct: 558 AGDNQAQQGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENSV--------------- 602 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 L+ S EE RL+YV +TRA +L I + ++ Sbjct: 603 -------------------LEASGLEEERRLMYVAITRARQRLYISLAQSRMLHGQTRYA 643 Query: 680 TWYDMVYDSFHND 692 + + Sbjct: 644 MRSRFLDEIPEQH 656 >gi|306822880|ref|ZP_07456256.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] gi|304553512|gb|EFM41423.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] Length = 885 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 118/728 (16%), Positives = 222/728 (30%), Gaps = 124/728 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P S + + ++ T E Sbjct: 82 AAAEMRERLAALVGPEAERMWISTFHSACVRILRRDG--DQIGLKSGFSIYDTADSERLI 139 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK---MFKST 123 L+ + K + I K D K L +D+ + + Sbjct: 140 KLIGADLNID----LKRYTPRMILGKISDYKNSLISWKDQLKTYAADYRPGQRGYQLGRF 195 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + + Y+ + +DF+DLI+ T +L + ++ + +I +D Sbjct: 196 DNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELFRTCPQASDY---YRHKFRYIFVD 252 Query: 184 EVQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L+ D P + VGD QSIY+F GA+ + Sbjct: 253 EYQDTNHAQYVLVRELSGIDSGEQADPHATGAGRVGPSWVTVVGDSDQSIYAFRGADIRN 312 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + + I L ++RST IL + V + EN + Sbjct: 313 IQDFEEDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK-------- 356 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + A A IA I+ + Sbjct: 357 -------------LWTAL-------GKGDPIIGYAADN-------AQQEAGYIASEITRL 389 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + I D+ ++ R + + + + + Sbjct: 390 HTEE---------GIAYSDMAIMYRANAQSRSLEETM----INANLPYQLVGGTKFYERR 436 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKICTQRH-----ETETVYEY 469 +KD +A + I++ DD++ +L P + + RH + + Sbjct: 437 EVKDAIAYLQAIVNPADDVNMRRILNVPKRGLGARAEGLVAMYADRHGTTFFDGIEHLDQ 496 Query: 470 IQKFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 I+ +HEL A P + +L ++ + Sbjct: 497 IEGMTGRTAKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDAS 556 Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582 +D L + + EQN+ +L + + + + +V +MT+HTAKG Sbjct: 557 RVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKG 616 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H S Sbjct: 617 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDTS 642 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YVG+TRA +L + + + + ++N+ + + + K+ + Sbjct: 643 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLIDWKRKEAGM 702 Query: 703 SINKDEWI 710 + W Sbjct: 703 ERMRGGWQ 710 >gi|296110659|ref|YP_003621040.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154] gi|295832190|gb|ADG40071.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154] Length = 749 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 106/693 (15%), Positives = 217/693 (31%), Gaps = 136/693 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64 G ++ L ++ + V + ++ L + Sbjct: 30 GAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAKEMRERISALLSEDVARDIWVS 89 Query: 65 RFSLLSSFFLTQKFT--------------PQKNIITQEINKKSPDLKEK-LKKSQDEFIK 109 F L+ L + QK ++ + I+ + D + + Sbjct: 90 TFHALAVRILRRDGENIGLSRNFTIIDTSAQKTLMKRVISDLNLDTNQYDPRTILGMISN 149 Query: 110 IRDRFNTYK--MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ + ++ A + Y++ K+ +DF+DLI+ T DL + Sbjct: 150 AKNDMLRPRDYAKQADNAFQETVAEIYTAYQQELKRAQSVDFDDLIMLTIDLFQSTPE-- 207 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + + ++ +DE QDT+ Q+ ++ L + + L VGD QSIY Sbjct: 208 -VLTRYQNQFEYLHVDEYQDTNDAQYTIVNLLAK----------RSQNLAVVGDADQSIY 256 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA +L ++ + L ++RST +IL + V + Sbjct: 257 GWRGANMNNILNFEKDYPT--------AHTVMLEQNYRSTQNILDAANAVINHNNER--- 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + G ++ + ++ D A Sbjct: 306 -------VPKKLWTQNGKGDKIIYYRAQTERD-------------------------EAN 333 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I + M + + D VL R + + + Sbjct: 334 FILSNVQKMREENNMA---------YSDFAVLYRTNAQSRNVEESL----VKANMPYTMV 380 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 + I D+M+ I + +++ +F ++ P + ++ + Y Sbjct: 381 GGHKFYERKEILDIMSYMNLITNPDNNAAFERVVNEPKRGLGATSLNRLRELANRLNVSY 440 Query: 468 -------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 E + + SKF +H+L ++F + + L + RQ + Sbjct: 441 MTAIDSIELAPEISTKAASKFLVFADMMHDLRQQSEFLNVTELAELAMTRSGYRQMLAEK 500 Query: 521 FGNE---VIDVLDEFLNFTLRNEQ----NSYSSLQELISEL-EQYPPTIKRAHSANHNEV 572 + ++ L+EFL+ T ++ + ++ + L T V Sbjct: 501 SDPDSQARLENLEEFLSVTKEFDEKYRADDPEAVDPMTDFLGSTALMTDLDDFEEGDGAV 560 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFL+ +F Sbjct: 561 TLMTLHAAKGLEFPVVFLIGMEEGIFPLSRSL---------------------------- 592 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + EE RL YVG+TRA ++L + Sbjct: 593 ------MDEDLLEEERRLAYVGITRAKEKLFLT 619 >gi|325982026|ref|YP_004294428.1| UvrD/REP helicase [Nitrosomonas sp. AL212] gi|325531545|gb|ADZ26266.1| UvrD/REP helicase [Nitrosomonas sp. AL212] Length = 738 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 102/626 (16%), Positives = 200/626 (31%), Gaps = 120/626 (19%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ Q + + F +L S + K I+ ++++ + + ++ Sbjct: 96 LRSHYQDAGLPQAFQILDSA---DQLALIKRIL-KDLSADDKKFPPRQVQWF--INNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 YE+ K +DF +L++ + +LL + ++ + Sbjct: 150 SGLRAAYVTPDDVFSRHMLEFYQAYEQRCHKEGAVDFAELLLRSYELLSRNEI---LCQH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + NHIL+DE QDT+ +Q++ ++ L +FAVGD+ QSIY+F GA Sbjct: 207 YRERFNHILVDEFQDTNPLQYKWLKLLAGTGTKETAV------VFAVGDDDQSIYAFRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R II+L ++RS +IL + + G + Sbjct: 261 YSGNMRDFERDF--------GITKIIKLEQNYRSHGNILDAANALIENNSERLGKN---- 308 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + D A I Sbjct: 309 -----------------LW------TAEGRGEPLRVYNAPNDFDE--------AAFIVEE 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + + + I +I +L R + ++ + I Sbjct: 338 VKTLHAEE---------GIALSEIALLYRSNAQSRVLEHSL----FNAAIPYRVYGGMRF 384 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471 D IK +A R I + +DD + + ++ P + ++ + + +++ Sbjct: 385 FDRQEIKHALAYLRLIANPDDDGALLRVINFPARGIGARSLEQLQDDAKAQGHSLWAAAL 444 Query: 472 KFANCGISKFQH----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SR 520 + +S Q + I + +L + + R Sbjct: 445 QKCGGEVSLLQESHKSLKGVAKFVFLIMTMRQSCGELLLPQIVEYMLIHSELLVHYAKER 504 Query: 521 FGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 +E ++ L+E +N SL E ++ + + +++MTVH Sbjct: 505 ESSERLENLNELINAATSFVHEIGNDSLTEFLAHASLEAGE--HQAGSGRDALQLMTVHA 562 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE VFL +F H++ Sbjct: 563 AKGLEFHTVFLSGLEEGLFPHENSLN---------------------------------- 588 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIIC 665 + + E RL+YV MTRA +L + Sbjct: 589 ESNGIAEERRLMYVAMTRARRRLYLS 614 >gi|325911371|ref|ZP_08173783.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D] gi|325476721|gb|EGC79875.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D] Length = 742 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +E E + + L ++ + +L ++ + + Sbjct: 66 AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ + NI +++ + L + ++++ + + + + Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ + +C++DF+DLI+ T L K + + + +IL+DE QD Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ L + + + VGD QSIY + GA + +L ++ + Sbjct: 226 TNQAQYELCYLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RST IL + V +N + Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + A I I+ I Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D IKD+MA R Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481 + + D +S ++ +P I F+ + + K Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + + + E+I A+ + + IL + E + LDEFL T + Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521 Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + + + + L + + + N ++V +MT+H AKGLE PVVFLV Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F S EE RL YVG Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607 Query: 655 MTRASDQLIIC 665 +TRA QL + Sbjct: 608 ITRAKKQLYLT 618 >gi|171743075|ref|ZP_02918882.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC 27678] gi|283455915|ref|YP_003360479.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] gi|171278689|gb|EDT46350.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC 27678] gi|283102549|gb|ADB09655.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] Length = 885 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 119/728 (16%), Positives = 223/728 (30%), Gaps = 124/728 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P S + + ++ T E Sbjct: 82 AAAEMRERLAAIVGPEAERMWISTFHSACVRILRRDG--DQIGLKSGFSIYDTADSERLI 139 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK---MFKST 123 L+ + K + I K D K L +D+ + + Sbjct: 140 KLIGADLNID----LKRYTPRMILGKISDYKNSLISWKDQLKTYAADYRPGQRGYQLGRF 195 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + + Y+ + +DF+DLI+ T +LL+ ++ + +I +D Sbjct: 196 DNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELLRTCPQASDY---YRHKFRYIFVD 252 Query: 184 EVQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L+ D P + VGD QSIY+F GA+ + Sbjct: 253 EYQDTNHAQYVLVRELSGIDSGEQADPHATGAGRVGPSWVTVVGDSDQSIYAFRGADIRN 312 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + + I L ++RST IL + V + EN + Sbjct: 313 IQDFEEDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK-------- 356 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + A A IA I+ + Sbjct: 357 -------------LWTAL-------GKGDPIIGYAADN-------AQQEAGYIASEITRL 389 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + I D+ ++ R + + + + + Sbjct: 390 HTEE---------GIAYSDMAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERR 436 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKICTQRH-----ETETVYEY 469 +KD +A + I++ DD++ +L P + + RH + + Sbjct: 437 EVKDAIAYLQAIVNPADDVNMRRILNVPKRGLGARAEGLVAMYADRHGTTFFDGIEHLDQ 496 Query: 470 IQKFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 I+ +HEL A P + +L ++ + Sbjct: 497 IEGMTGRTAKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDAS 556 Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582 +D L + + EQN+ +L + + + + +V +MT+HTAKG Sbjct: 557 RVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKG 616 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H S Sbjct: 617 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDTS 642 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YVG+TRA +L + + + + ++N+ + + + K+ + Sbjct: 643 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLIDWKRKEAGM 702 Query: 703 SINKDEWI 710 + W Sbjct: 703 ERMRGGWQ 710 >gi|309804689|ref|ZP_07698754.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 09V1-c] gi|309809370|ref|ZP_07703232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 2503V10-D] gi|312873367|ref|ZP_07733418.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d] gi|308166081|gb|EFO68299.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 09V1-c] gi|308170281|gb|EFO72312.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 2503V10-D] gi|311091051|gb|EFQ49444.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d] Length = 742 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +E E + + L ++ + +L ++ + + Sbjct: 66 AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ + NI +++ + L + ++++ + + + + Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ + +C++DF+DLI+ T L K + + + +IL+DE QD Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ L + + + VGD QSIY + GA + +L ++ + Sbjct: 226 TNQAQYELCYLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RST IL + V +N + Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + A I I+ I Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D IKD+MA R Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481 + + D +S ++ +P I F+ + + K Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + + + E+I A+ + + IL + E + LDEFL T + Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521 Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + + + + L + + + N ++V +MT+H AKGLE PVVFLV Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F S EE RL YVG Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607 Query: 655 MTRASDQLIIC 665 +TRA QL + Sbjct: 608 ITRAKKQLYLT 618 >gi|86605998|ref|YP_474761.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab] gi|86554540|gb|ABC99498.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab] Length = 776 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 110/604 (18%), Positives = 194/604 (32%), Gaps = 103/604 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 K I+T+++N + + +++ T + + + + YE+ Sbjct: 154 KEIVTKQLNLDERKFDPR--SVRYAISNAKNQGWTPADLERHQPNFRGRILAQVYELYED 211 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 N LDF++LI L ++ + + Q HIL+DE QDT+ Q+E+IR L Sbjct: 212 QLAANNALDFDNLIWIPVQLFRQNE---QVLAYWHQRFRHILVDEYQDTNRTQYELIRLL 268 Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + ++ + R+LF VGD QSIY F GA+ +L + + + ++I Sbjct: 269 ATNGETRRSEWDWTNRSLFVVGDADQSIYRFRGADFTILLEFQETFGDGLPDDDTR-TLI 327 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RSTA IL + + T H Sbjct: 328 KLEENYRSTATILQAANVLIEKNTERIDKILRPTRPPGH--------------------- 366 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 D + + A + TI + + D + Sbjct: 367 -------PIVCYQAEDEMAE-------AEFVVNTIRRLHSQNPNS--------SWGDFAI 404 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + + + I D IKD++A R +L+ D S + Sbjct: 405 LYRTNAQSRPFEEVL----LRWGIPYTVVGGLRFYDRKEIKDVLAYLRVVLNPADSFSLL 460 Query: 439 CMLKSPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHEL 491 ++ P + + K+ + + + I Sbjct: 461 RIINVPRRGIGKSTLDKLSEAAAALNVPLWTILSDEASVTNLLGRSAKPVLQFAQLIQHW 520 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQN-SYSSL 547 S +L + ++ E + + E N + E+ SL Sbjct: 521 HRQMAQVSAAALLEGLLRDCGYLEDLKAQGTEEAEERIANVMELYNAARQFEEEQEDPSL 580 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + +S + +V +MT+H +KGLE PVVFLV +F + Sbjct: 581 EAFLSNVSLASDLDT--LQEGAEKVSLMTLHASKGLEFPVVFLVGLEQGLFPN------- 631 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA +QL +C Sbjct: 632 ---------------------------FRALEDPAALEEERRLCYVGITRAREQLFVCHA 664 Query: 668 SNTS 671 S Sbjct: 665 SERR 668 >gi|33592827|ref|NP_880471.1| DNA helicase II [Bordetella pertussis Tohama I] gi|33601161|ref|NP_888721.1| DNA helicase II [Bordetella bronchiseptica RB50] gi|33572475|emb|CAE42046.1| DNA helicase II [Bordetella pertussis Tohama I] gi|33575596|emb|CAE32674.1| DNA helicase II [Bordetella bronchiseptica RB50] Length = 766 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 107/718 (14%), Positives = 217/718 (30%), Gaps = 144/718 (20%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + T + K ++ + Q ++ Sbjct: 94 LRAHHRDAGLPQAFQILDT---TDQLAAIKRLLKAGNIDDEKYPP---RDVQRFINGAKE 147 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ + YE ++ V+DF +L++ +LL + A +R Sbjct: 148 EGLRPGDVEAYDPHRRKLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 204 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+ +Q++ +R L + +FAVGD+ QSIY+F GA Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------TGAAIFAVGDDDQSIYAFRGA 254 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R +I L ++RS IL + + G + + Sbjct: 255 NVGNMADFERDYAH--------GRVIRLEQNYRSYGHILDSANALIGHNTGRLGKNLWTE 306 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G+ V ++ S + A+ + Sbjct: 307 QG-------EGEPVRV----------------------------IEQPSDGMEAQWLVDE 331 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I +I + +I VL R + ++ I Sbjct: 332 IRALINDGRM----------RSEIAVLYRSNAQSRVLEHAL----FSVGIPYKVYGGLRF 377 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + IK +A R I + DD S++ ++ P + ++ R +++ + Sbjct: 378 FERQEIKHALAYLRLIANPNDDTSWMRVVNFPTRGIGARTLEQLSDAARAHDTSLFGAVA 437 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + G S + I ++ H + + ++ A + + R G E ++ L+ Sbjct: 438 RVGGKGGSNLAQFAQLIGQMAHDTRELPLPELVDHVIEASGLKAHYQTEREGAERLENLN 497 Query: 531 EFLNFTLRNEQNS-------------------------------YSSLQELISELEQYPP 559 E + L L + L Sbjct: 498 ELITAATVFAAEENFEGLPAGVVPDHDVSGALMPGVVDAPQPDTLGGLTPLAAFLSHAAL 557 Query: 560 TI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + V++MTVH AKGLE VF+ +F H++ Sbjct: 558 EAGDNQAQVGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENS--------------- 602 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 ++ + EE RL+YV +TRA ++L + + ++ Sbjct: 603 -------------------IMEPAGLEEERRLMYVAITRARERLYLSLAQSRMLHGQTRY 643 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + + + + A + + + T Sbjct: 644 AMRSRFLEEIPEQHLKWLSPRAGLHQGGGFGGAAPAWSSRGDAFGRKPTGTAAPRQPR 701 >gi|33596606|ref|NP_884249.1| DNA helicase II [Bordetella parapertussis 12822] gi|33573307|emb|CAE37290.1| DNA helicase II [Bordetella parapertussis] Length = 766 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 107/718 (14%), Positives = 217/718 (30%), Gaps = 144/718 (20%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + T + K ++ + Q ++ Sbjct: 94 LRAHHRDAGLPQAFQILDT---TDQLAAIKRLLKAGNIDDEKYPP---RDVQRFINGAKE 147 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ + YE ++ V+DF +L++ +LL + A +R Sbjct: 148 EGLRPGDVEAYDPHRRKLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 204 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+ +Q++ +R L + +FAVGD+ QSIY+F GA Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------TGAAIFAVGDDDQSIYAFRGA 254 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R +I L ++RS IL + + G + + Sbjct: 255 NVGNMADFERDYAH--------GRVIRLEQNYRSYGHILDSANALIGHNTGRLGKNLWTE 306 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G+ V ++ S + A+ + Sbjct: 307 QG-------EGEPVRV----------------------------IEQPSDGMEAQWLVDE 331 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I +I + +I VL R + ++ I Sbjct: 332 IRALINDGRM----------RSEIAVLYRSNAQSRVLEHAL----FSVGIPYKVYGGLRF 377 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + IK +A R I + DD S++ ++ P + ++ R +++ + Sbjct: 378 FERQEIKHALAYLRLIANPNDDTSWMRVVNFPTRGIGARTLEQLSDAARAHDTSLFGAVA 437 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + G S + I ++ H + + ++ A + + R G E ++ L+ Sbjct: 438 RVGGKGGSNLAQFAQLIGQMAHDTRELPLPELVDHVIEASGLKAHYQTEREGAERLENLN 497 Query: 531 EFLNFTLRNEQNS-------------------------------YSSLQELISELEQYPP 559 E + L L + L Sbjct: 498 ELITAATVFAAEENFEGLPAGVVPDHDVSGALMPGVVDAPQPDTLGGLTPLAAFLSHAAL 557 Query: 560 TI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + V++MTVH AKGLE VF+ +F H++ Sbjct: 558 EAGDNQAQVGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENS--------------- 602 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 ++ + EE RL+YV +TRA ++L + + ++ Sbjct: 603 -------------------IMEPAGLEEERRLMYVAITRARERLYLSLAQSRMLHGQTRY 643 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + + + + A + + + T Sbjct: 644 AMRSRFLEEIPEQHLKWLSPRAGLHQGGGFGGAASAWSSRGDAFGRKPTGTAAPRQPR 701 >gi|217969625|ref|YP_002354859.1| UvrD/REP helicase [Thauera sp. MZ1T] gi|217506952|gb|ACK53963.1| UvrD/REP helicase [Thauera sp. MZ1T] Length = 744 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 121/760 (15%), Positives = 235/760 (30%), Gaps = 126/760 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W + QV +L + + S Sbjct: 28 GAGSGKTRVLTTRIAWLIQSGQVDPAGILAVTFTNKAAKEMLARLGAMLPVSTRGMWIGT 87 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L++ L + + + + L + L ++ Q Sbjct: 88 FHGLANRLLRAHHRDAGLPQLFQILDSADQLAAIKRLLKTLNVDDEKFPPRELQHFINGQ 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 ++ N + ++ L L YE ++ V+DF +L++ +++LL++ ++ +R Sbjct: 148 KEAGNRPHVVEAWDDYTRLRVQLYQEYEAQCQRESVVDFAELLLRSHELLERNEL---LR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + HIL+DE QDT+ +Q+ ++ ++ +F VGD+ QSIY F Sbjct: 205 RHYQRRFRHILVDEFQDTNRLQYRWLKLFADE------GREGGAAMFCVGDDDQSIYRFR 258 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GAE + +R + ++I L ++RS A+IL + + N G + Sbjct: 259 GAEVGNMRDFEREFR--------VNNVIRLEQNYRSHANILDAANAIILHNSNRLGKNLW 310 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G+ V + + + AR I Sbjct: 311 TDQG-------AGEPIRVF----------------------------EAYADADEARWIV 335 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I ++ + +I +L R + ++ I Sbjct: 336 EEIQALVRDGALR----------SEIALLYRSNAQSRVLEHQLFA----AGIPYRVYGGL 381 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IK +A R I + +DD SF ++ P + + R + ++Y Sbjct: 382 RFFERQEIKHALAYLRLIANPDDDTSFARVVNFPTRGIGARSLEVLADAARTYSTSLYAT 441 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528 + + S ++ + EL + +L R + + G E ++ Sbjct: 442 VPHLSGKPGSALAVFVRLVEELRRDTAGLPLPELVDHVLDLSGLRAHYKADKEGRERLEN 501 Query: 529 LDEFLNFTLRNEQNSYSSLQE--------LISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 LDE +N + + L L + V++MTVH Sbjct: 502 LDELINAAANFLAEAQAQAGAGEAQPHALLADFLAHASLEAGDHQADQGADAVQLMTVHA 561 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE VVFL +F H++ L Sbjct: 562 AKGLEFDVVFLSGLEEGLFPHENS----------------------------------IL 587 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 ++ EE RL+YV +TRA ++L + + ++ + + + Sbjct: 588 EQDGLEEERRLMYVAVTRARERLYLSFAQSRMLHGQTRYNLRSRFLEEIPAGLTKWLTPP 647 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 S P Q Sbjct: 648 QPRSAAGGAMGGMGGGYFKPSAKSAVGGAAQVQRAPRPAF 687 >gi|49475840|ref|YP_033881.1| DNA helicase II [Bartonella henselae str. Houston-1] gi|49238648|emb|CAF27892.1| DNA helicase II [Bartonella henselae str. Houston-1] Length = 778 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 108/550 (19%), Positives = 182/550 (33%), Gaps = 108/550 (19%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L +Y+ K DF DL++++ + + I + +IL+DE QDT Sbjct: 209 MGRELYHNYQHRLKSLNACDFGDLLLHSISIFQHNPD---ILRDYHSKFRYILVDEYQDT 265 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + L VGD+ QSIY + GA+ +LR ++ Sbjct: 266 NTAQYLWLRLLAQQP------KGQHINLCCVGDDDQSIYGWRGAQVDNILRFEKDFP--- 316 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + S + G + S Sbjct: 317 -----PAKIIRLERNYRSTSHILKTASHLISHNQGRLGKTLFSDQV-------------- 357 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 ++ + +DS + AR I I D ++ Sbjct: 358 ------------NTEEEKVKIHAAWDSEEE-------ARAIGEEIERAQQADHSLNH--- 395 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 I +LVR L ++ + + I+D MA R + Sbjct: 396 -------IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYLRVV 444 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481 + DDL+F ++ +P + + + R ++ + S Sbjct: 445 VQPADDLAFERIINTPKRGLGDATLRILYESARTRAIPLFFAAAEIIETDELKPKARSAL 504 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + V++ ++ Q + +IL ++ E L+ EQ Sbjct: 505 RSVVENFRRWQNMLQNTPHRELAEIILDDSGYTSMWLEDRSPEAPTRLENLKEMVRSMEQ 564 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L S LE + + N + V IMT+H+AKGLE VFL +F H+ Sbjct: 565 -----FESLPSFLEHVALVMDAENDENTDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 619 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 +S EE RL YVG+TRA Sbjct: 620 RSLD--------------------------------EGGRSGLEEERRLAYVGLTRAKKH 647 Query: 662 LIICKHSNTS 671 L I SN Sbjct: 648 LHIWFVSNRR 657 >gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA [Mycobacterium intracellulare ATCC 13950] Length = 780 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 116/749 (15%), Positives = 210/749 (28%), Gaps = 141/749 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + + + L ++ Sbjct: 77 AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRR 133 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L D K+ D + Sbjct: 134 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPADAVSKLTDD---------SDELS 183 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 184 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 240 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q+ ++R L S P L VGD QSIY+F GA + + +R Sbjct: 241 TNHAQYVLVRELVGRGGTEAPASSDDVPPAELCVVGDADQSIYAFRGATIRNIEDFERDY 300 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + I L ++RST +IL+ + V + + Sbjct: 301 P--------DATTILLEQNYRSTQNILSAANSVIARNSGRRDKR---------------- 336 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW ++ + + + AR +A I + Sbjct: 337 -----LW-------TAEGAGELIVGYVADNEHDE-------ARFVAEEIDALADKGE--- 374 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 I D+ V R + + + I + I+D++A Sbjct: 375 ------ITYNDVAVFYRTNNSSRSLEEVF----IRAGIPYKVVGGVRFYERKEIRDIVAY 424 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-------- 475 R + + D +S +L +P + + + + + + A Sbjct: 425 LRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNS 484 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 ++ + EL D +L R++ S + +D L+E Sbjct: 485 RAEKAIAGFVELLDELRGRL-DDDLGDLVESVLERTGYRRELESSSDPQELARLDNLNEL 543 Query: 533 LNFTLRN-----------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VR 573 ++ E L LE+ V Sbjct: 544 VSVAHEFSTDRANADALDESLHTPEDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVT 603 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE PVVF+ +F H Sbjct: 604 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPT------------------------- 638 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 E RL YVG+TRA +L + + S+ + + + Sbjct: 639 ---------ELSEERRLAYVGITRARRRLYLSRAIVRSSWGQPMLNPESRFLREIPQELI 689 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENT 722 ++ S + + T Sbjct: 690 DWRRTAPAPSFSAPVSGVGRFGPPRAAPT 718 >gi|312870767|ref|ZP_07730873.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a] gi|311093643|gb|EFQ51981.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a] Length = 742 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +E E + + L ++ + +L ++ + + Sbjct: 66 AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ + NI +++ + L + ++++ + + + + Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ + +C++DF+DLI+ T L K + + + +IL+DE QD Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ L + + + VGD QSIY + GA + +L ++ + Sbjct: 226 TNQAQYELCYLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RST IL + V +N + Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + A I I+ I Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D IKD+MA R Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481 + + D +S ++ +P I F+ + + K Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + + + E+I A+ + + IL + E + LDEFL T + Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521 Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + + + + L + + + N ++V +MT+H AKGLE PVVFLV Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F S EE RL YVG Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607 Query: 655 MTRASDQLIIC 665 +TRA QL + Sbjct: 608 ITRAKKQLYLT 618 >gi|254291625|ref|ZP_04962414.1| DNA helicase II [Vibrio cholerae AM-19226] gi|150422482|gb|EDN14440.1| DNA helicase II [Vibrio cholerae AM-19226] Length = 723 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 116/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N + ++ I+ L H + + + G Sbjct: 441 SVGLLNDQVLTGRAANALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|256752858|ref|ZP_05493697.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus CCSD1] gi|256748260|gb|EEU61325.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus CCSD1] Length = 644 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 103/555 (18%), Positives = 188/555 (33%), Gaps = 112/555 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+D+II T +L K+ + ++ +I++DE QDT+ Q+ + L + + Sbjct: 116 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNTPQYHFVNMLAQKY 172 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 R L VGD+ QSIY + GA+ K +L ++ +I+L + Sbjct: 173 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYP--------DAKVIKLEQN 214 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL + V + + LW + Sbjct: 215 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 246 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + A + I ++ + +D +L R Sbjct: 247 GEKIILCELDNEREE-------AEFVIQEIISLKERENR---------SFRDFAILYRTN 290 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + +I D IKD++A R +++ DD+SF ++ Sbjct: 291 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 346 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500 P I + + +++ I +K ++I ELI + Sbjct: 347 PKRGIGAATIEALEATALEKDTSLFFAIDDAKVSQRAKNSLLEFKEFILELIDKKDTMTV 406 Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556 + IL ++ + + L+EFLN E+ + SL+ ++ + Sbjct: 407 SEVINYILEETGYVEELEKEESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLAGITL 466 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 V +MT+H+AKGLE PVVF+V VF Sbjct: 467 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS---------------- 508 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + EE RL YVG+TR+ ++L + + KS Sbjct: 509 ------------------FKSFTDEYELEEERRLCYVGITRSKEKLYLTYARRRNLYGKS 550 Query: 677 NQRTWYDMVYDSFHN 691 ++ + + Sbjct: 551 QYSSYSRFISEIPER 565 >gi|189466065|ref|ZP_03014850.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM 17393] gi|189434329|gb|EDV03314.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM 17393] Length = 784 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 105/663 (15%), Positives = 203/663 (30%), Gaps = 121/663 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y + ++ +DF+DL+ T L + + + ++ +IL+D Sbjct: 170 AAKMPAIRDIYHRYWDRCRQADAMDFDDLLFYTFILFRDHPE---VLARYQEQFRYILVD 226 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ L +D + + VGD+ QSIYSF GA+ +L +I Sbjct: 227 EYQDTNYAQHSIVLQLAKD----------HQQVCVVGDDAQSIYSFRGADIDNILYFTKI 276 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E S Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + + I+ + ++ Sbjct: 317 ---------------EKEKGEAIGVFQAYSDVEEGDI--------VVNKIAELRRSEH-- 351 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R + IKD++A Sbjct: 352 -------YPYSDFAILYRTNAQSRVFEEAMR----KRGMPYRIYGGLSFYQRKEIKDVIA 400 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI T +++ + + F Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATENGVSLWTVLCEPLTYGLNFNK 460 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 SK Q I + + ++ T I+ E + ++E Sbjct: 461 GTHSKLQIFRDLISGFLEGVVDKNAYEIGTEIIRQSGIINDVCQDNSPENLSRKENIEEL 520 Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N E N SL + +SE+ + ++ +MTVH+AKGLE Sbjct: 521 VNGMSDFCAMRLEEGNPNISLTDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFR 579 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 580 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 605 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D R+ + ++ Sbjct: 606 ERRLFYVAITRAEEHCFLSYARTRFRYGKMEFGSPSRFLKDIDIRFLRLPQEAGLSNKID 665 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 DE A+ + E+ E K + + ST + Sbjct: 666 DESGAFRRENSTGFSRSPHVRESFYNKEKETPQRPKQQMIAPSVPRNLKRVTSSTPASSS 725 Query: 767 KTN 769 Sbjct: 726 VPA 728 >gi|292558177|gb|ADE31178.1| ATP-dependent DNA helicase PcrA [Streptococcus suis GZ1] Length = 692 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 92/589 (15%), Positives = 182/589 (30%), Gaps = 118/589 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q+ +I +DE QD Sbjct: 99 QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPE---VLTYYQQKFQYIHVDEYQD 155 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ + Sbjct: 156 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPES 205 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST ++L ++V N + Sbjct: 206 --------KVVLLEENYRSTKNVLQAANEVIENNRNRRPKK------------------- 238 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ D + A +A I + Sbjct: 239 --LW-------TQNAQGDLITYYRARDENDE-------AIFVAGQIDQLHREGKA----- 277 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + I I I+D+++ Sbjct: 278 -----YKDFTVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNI 328 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + K+ + ++ E Q Sbjct: 329 IANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPVKGKAAQAV 388 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + ++ L + + +L ++ E + + EFL+ T Sbjct: 389 FDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQEFLSVTKN 448 Query: 539 NE----QNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + + + L +L L+ +EV +MT+H AKGLE PVVFL+ Sbjct: 449 FDEKDVEEEETGLDKLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIGM 508 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF + YV Sbjct: 509 EENVFPLSRAAEEEDELEEERRL----------------------------------AYV 534 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 G+TRA L + + ++N + + + + + Sbjct: 535 GITRAEQTLYLTNAYSRLLFGRTNYNQPSRFIREISSDLLDYQGLARPA 583 >gi|260199970|ref|ZP_05767461.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T46] gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46] gi|289415284|gb|EFD12524.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46] Length = 769 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 113/739 (15%), Positives = 205/739 (27%), Gaps = 134/739 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + L ++ Sbjct: 79 AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + + + Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L N P L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL+ + V + + Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + I+D++A R Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + A Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ EL + +L R++ + + +D L+E ++ Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542 Query: 536 TLRN----------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGL 583 + L LE+ H V +MT+HTAKGL Sbjct: 543 AHEFSTDRDGPRWTSEAGRPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGL 602 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVF+ +F H Sbjct: 603 EFPVVFVTGWEDGMFPHMRALDNPT----------------------------------E 628 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E RL YVG+TRA +L + + S+ + + + ++ S Sbjct: 629 LSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPS 688 Query: 704 INKDEWIAYEWSTHHPENT 722 + A + + P T Sbjct: 689 FSAPVSGAGRFGSARPSPT 707 >gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] Length = 783 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 102/637 (16%), Positives = 179/637 (28%), Gaps = 126/637 (19%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 T+ + Y+ + LDF+DLI T +L+ I + HIL+DE Sbjct: 181 MATVIAQVYGEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHILVDEY 237 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+ ++R L + P L VGD QSIY+F GA + + +R Sbjct: 238 QDTNHAQYVLVRELVGHHLEDHDG-VPPSELCVVGDADQSIYAFRGATIRNIEDFERDFP 296 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I L ++RST IL + V + + Sbjct: 297 --------DATTILLEQNYRSTQTILNAANAVIARNTGRREKR----------------- 331 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + + + AR +A I + Sbjct: 332 ----LW-------TDAGQGELIVGYVADNEHDE-------ARFVADEIDALTDR------ 367 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 DI V R + + + I + I+D++A Sbjct: 368 ---HGYNYNDIAVFYRTNNSSRALEEVF----IRAGIPYKVVGGVRFYERREIRDIVAYL 420 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF--- 481 R + + D +S +L +P + + + + E +Q A + Sbjct: 421 RVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGVSFNEALQAAAEGRVPMLNTR 480 Query: 482 -----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 ++ + +L D +L R++ + + +D L+E + Sbjct: 481 SEKCIASFVQMLDDLRGKLDEE-LGDLVEAVLERTGYRRELEASSDPQDLARLDNLNELV 539 Query: 534 NFTLRNE-----------------QNSYSSLQELISELEQYPPTIKRAH--SANHNEVRI 574 + L LE+ V + Sbjct: 540 SVAHEFSIDLANAQALAEESDEPVDEDIPDTGVLAQFLERVSLVADADDIPEEGSGVVTM 599 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+HTAKGLE P VF+ +F H Sbjct: 600 MTLHTAKGLEFPAVFVTGWEDGMFPHMRALGDP--------------------------- 632 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + E RL YVG+TRA +L + + S+ + + + Sbjct: 633 -------NELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELID 685 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731 ++I+ Sbjct: 686 WRRIEAPTPAYAAPGRMSSSGGGGIGFGSPRPSPNRP 722 >gi|86132275|ref|ZP_01050870.1| UvrD/REP helicase [Dokdonia donghaensis MED134] gi|85817194|gb|EAQ38377.1| UvrD/REP helicase [Dokdonia donghaensis MED134] Length = 778 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 109/691 (15%), Positives = 214/691 (30%), Gaps = 129/691 (18%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDL 152 K+ Q+ ++ T + + + + + A Y + K +DF+DL Sbjct: 142 KQVQNRISSFKNSLITVRAYANNPELVEADAMAKRPRMGEIYAEYVDRCFKAGAMDFDDL 201 Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212 ++ TN+LL + + K +IL+DE QDT+ Q+ ++++L++ F Sbjct: 202 LLRTNELLNRFPE---VLNKYQNRFKYILVDEYQDTNHSQYLIVKALSDKF--------- 249 Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272 + + VGD+ QSIY+F GA +L ++ + ++ L ++RS+ +I+ Sbjct: 250 -QNICVVGDDSQSIYAFRGANINNILNFQKDYEN--------VAMYRLEQNYRSSKNIVE 300 Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332 + V + + +W ++ Q S Sbjct: 301 AANSVIEKNKTRLDKT---------------------VW------TANEDGGQIIVHRSP 333 Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 D R +A +I F N + D +L R + + Sbjct: 334 TDGEEG--------RYVASSI---------FENRMNHQLNNGDFAILYRTNAQSRAMEDA 376 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R I IKD++ R +++ +D+ + ++ P Sbjct: 377 LR----KRDIPYRIYGGLSFYQRKEIKDVLGYLRVLVNPKDEEALKRVVNYPARGIGGTT 432 Query: 453 IFKICTQRHE-TETVYEYIQKFAN---------CGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ +++E + K +K ++ + I + + Sbjct: 433 LDKLTVAAKHYGRSMFEVMDKIEQLGPSMNINRGTQTKLKNFVTMIKSFQILNEESDAFT 492 Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--EQNSYSSLQE-LISELEQ 556 + Q+ E I+ ++E LN EQ + L LE Sbjct: 493 VAETVARKTGLLQELKKDGTPEGIARIENIEELLNGMRDFVEEQKELADATGSLAEFLED 552 Query: 557 YPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 + + + V +MT+H AKGLE P V++V +F Sbjct: 553 VALATTLDNDTGDDDRVALMTIHLAKGLEFPFVYIVGMEEDLFPSGMS------------ 600 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 +S EE RL YV +TRA Q + + K Sbjct: 601 ----------------------MSTRSELEEERRLFYVALTRAEKQAYLTYTESRYRWGK 638 Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735 + + + + + K A + L++ + Sbjct: 639 LVDAEPSRFIEEIDDKYLDY-QTPMESYRYKPLIDADIFGDVDKSKLRLKKPVSGTPPKV 697 Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +L K PS + Sbjct: 698 GTPTQDQLRKLRKIRPAAGDSATPSLAGSLE 728 >gi|194466913|ref|ZP_03072900.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23] gi|194453949|gb|EDX42846.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23] Length = 757 Score = 291 bits (745), Expect = 4e-76, Method: Composition-based stats. Identities = 118/813 (14%), Positives = 239/813 (29%), Gaps = 153/813 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V N + ++ L S + Sbjct: 31 GAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIWVST 90 Query: 66 FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKS 122 F L L + T + L +++ + + K R + + Sbjct: 91 FHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNA 150 Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 A LT + Y++ + N LDF+DLI+ T +LL+ Sbjct: 151 KNALLTPDDYSKEANSMFENMVARAYKLYQQELEANQALDFDDLIMKTIELLESD---QE 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L + + + L VGD QSIY Sbjct: 208 TLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKY----------QNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA +L + + + L ++RST IL ++V + + + Sbjct: 258 WRGANMNNILNFEHDYPQ--------AKTVMLEQNYRSTQTILNAANEVIANNLYRKKKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + S+ + + A+ Sbjct: 310 ---------------------LW-------TENGQGDKISYYRAQNEHDE-------AQF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I +K D +L R + ++ I Sbjct: 335 IVSKIKE---------EQEKHGYHFNDFAILYRTNAQSRMVEETF----LKSSIPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467 D I+D++A I++ D +SF ++ +P + + +E Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNTPKRGIGLTSVEHLRNFANENGWTLL 441 Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + +K + + L A++ + D IL + Sbjct: 442 KAAQNVDTASEITARTRNKIDEFGQLMANLTKQAEYLTLTDLTEQILELSGYNKMLSDDR 501 Query: 522 GNE---VIDVLDEFLNFTLRNEQNS----YSSLQELISELEQYPPTIKRAH-SANHNEVR 573 E + LDEF + T ++ +LQ++I+ L + V Sbjct: 502 SLEAQARRENLDEFKSVTQEYDEQHKDDDDPNLQKIINFLADLALVSDQDDVDEQAPAVT 561 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 562 LMTLHAAKGLEFPVVFLVGMEEGIFPLSRALMEDDELEEERRL----------------- 604 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 YVG+TRA +L + + ++Y ++ Sbjct: 605 -----------------AYVGITRAKKKLYLT-------------NAFSRLLYGRIQRNQ 634 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + ++ +S + ++ P +R + ++ Sbjct: 635 PSRFVEEIDSELLQFENSPSGNSIKDSKLPFDRAAATAT-----TYRDQQKRTYRSAGKR 689 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786 + + +++ + +G ++ Sbjct: 690 VKPITNTGTGADKVGWKTGDKVEHKKWGQGTVV 722 >gi|153216919|ref|ZP_01950683.1| DNA helicase II [Vibrio cholerae 1587] gi|153830867|ref|ZP_01983534.1| DNA helicase II [Vibrio cholerae 623-39] gi|227080412|ref|YP_002808963.1| DNA helicase II [Vibrio cholerae M66-2] gi|229512494|ref|ZP_04401966.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21] gi|262191258|ref|ZP_06049454.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93] gi|298500833|ref|ZP_07010635.1| DNA helicase II [Vibrio cholerae MAK 757] gi|124114039|gb|EAY32859.1| DNA helicase II [Vibrio cholerae 1587] gi|148873656|gb|EDL71791.1| DNA helicase II [Vibrio cholerae 623-39] gi|227008300|gb|ACP04512.1| DNA helicase II [Vibrio cholerae M66-2] gi|229350493|gb|EEO15441.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21] gi|262032863|gb|EEY51405.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93] gi|297540337|gb|EFH76396.1| DNA helicase II [Vibrio cholerae MAK 757] Length = 723 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N S ++ I+ L H + + + G Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|241890126|ref|ZP_04777424.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379] gi|241863748|gb|EER68132.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379] Length = 727 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 184/549 (33%), Gaps = 112/549 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + AHY+ KKN VLDF+DL++ T L KK + + +I +DE QDT+ Sbjct: 168 VAEIYAHYQSYLKKNSVLDFDDLMLKTIVLFKKFPE---VLAIYQNQFQYIHVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +IQ+ +I+ L+ + + VGD+ QSIYS+ GA ++ ++ Sbjct: 225 VIQYRLIKMLSA----------VHKNVCVVGDDDQSIYSWRGACSDNIINFEKDFD---- 270 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++ L ++RS + IL + V + + + Sbjct: 271 ----DVELVFLDQNYRSNSTILDAANAVIKNNTDRKEK---------------------E 305 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW +++ + + + D + IA I + Sbjct: 306 LWS------ENKGGGKISVYAASNDKDETDD--------IAKKILELKKEG--------- 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KDI +L R + + + I ++DL+A I+ Sbjct: 343 -IDYKDIAILYRANYLSRQMENS----CLSFGIPYKLIGSLKFLQRQEVRDLLAYLNVIV 397 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKF-ANCGISKFQHVIKY 487 ++ D+ S ++ P + KI +++E ++ A K IK Sbjct: 398 NRADEFSLRRIINVPKRGVGASSMDKIDKYAEQYGISLFEALKNIEAIGVSKKIVTNIKL 457 Query: 488 IHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + LI + + + I + + E ++ + Sbjct: 458 LTNLIEKYSEVERYAIDELIIGIYKDSGYETMLKESNDPYAESRIENISELVSSAKQFSS 517 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + LI + + T + V + TVH +KGLE VVF++ +F Sbjct: 518 MN----DSLIDFISEMSLTSDSDDENQEDAVVLSTVHASKGLEYKVVFIMGLEENLFPS- 572 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 I +K+ EE RL YV +TRA ++ Sbjct: 573 -----------------------------IRDAESSADEKNKMEEERRLAYVAITRAKER 603 Query: 662 LIICKHSNT 670 L + + Sbjct: 604 LFMSYANRR 612 >gi|311748551|ref|ZP_07722336.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1] gi|126577070|gb|EAZ81318.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1] Length = 752 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 94/550 (17%), Positives = 174/550 (31%), Gaps = 116/550 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+E K +DF+DL+ NTN L + + K Q +I++DE QDT++ Sbjct: 176 EIYQRYQERLFKAGAMDFDDLLFNTNILFRDH---LDVLNKYQQRFKYIMVDEFQDTNVS 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + + L + + VGD+ QSIY+F GA+ + +L ++ Sbjct: 233 QYLITKKLAA----------VHQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLF--- 279 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +++L ++RST I+ + + + ++ ++L Sbjct: 280 -----VVKLEQNYRSTKTIVEAANSIIDKNKAQLKKIVWTSNP---------DGDQIELI 325 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + R +A TI F + + Sbjct: 326 KASSDNEEG--------------------------RIVANTI---------FEEKNNKQL 350 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + + R ++ IKDLMA RF ++ Sbjct: 351 SNNDFAILYRTNSQSRSMEEALR----KMNLTYKIVGGLSFYQRKEIKDLMAYMRFTVNT 406 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE----YIQKFANCGISKFQHVIK 486 D+ +F ++ P + + K + ++E + Sbjct: 407 ADEEAFKRVINYPKRGVGDTSVEKMLVAAYEHDIPLWEVVTNAHSFLPGRASNSVSDFAT 466 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---E 540 I + ++ I ++ E + + E LN E Sbjct: 467 MIKAFQIDVERKDAYEAANTIAKQSGLLRELYEDKTIEGLNRYENVQELLNAIKEYVDNE 526 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 +N SL + E+ T + +MT+H++KGLE VF+V +F Sbjct: 527 ENEDKSLGAFLQEIAL--LTDNDQDKDKTEAITLMTIHSSKGLEFKQVFVVGLEEDLFPS 584 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + + EE RL YV TRA D Sbjct: 585 QMM----------------------------------MQSREDLEEERRLFYVATTRAMD 610 Query: 661 QLIICKHSNT 670 +L Sbjct: 611 KLYFTYALTR 620 >gi|91203329|emb|CAJ72968.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia stuttgartiensis] Length = 729 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 107/617 (17%), Positives = 198/617 (32%), Gaps = 123/617 (19%) Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + Y+ K LDF+DL+I T +LLK + + + +ILIDE Q Sbjct: 162 HQMVAKIYKKYDTMLKSGNALDFDDLLIKTVELLK---IRPDVLSSYQERFKYILIDEYQ 218 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ +Q+ + R L + + + + GD QSIY + GA+ + ++ ++ Sbjct: 219 DTNFVQYAISRLLAQKY----------KNICVTGDPDQSIYGWRGADLRNIMDFEKDYP- 267 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 ++ L ++RST +IL V + + Sbjct: 268 -------DARVVLLEQNYRSTKNILLAASSVIQKNKYRKQK------------------- 301 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 ++W + ++ + + A IA TI + G Sbjct: 302 --EIW-------TENEHGEKIKTIHCENEHSE-------AEEIAKTIRALRGNG------ 339 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 I+ +I + R + + R + I V IKD++A R Sbjct: 340 ----IKYTEIALFYRTNAQSRTLEIALR----NAGIPYVIVGGVEFYRRKEIKDILAYIR 391 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGIS 479 ++ DD + + +P + KI E+ + + I + + Sbjct: 392 LCVNPCDDSALERAINTPARGIGTTTVKKIKEWAESRESTLFNAIGIVDAIHEVTGKSAA 451 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536 + + I L H+ S I+ E D ++E +N Sbjct: 452 AIKRFYELIMVLRHM-PETSVEKTLKSIIDKTGYIHFLRKSEEKESEDRIANVEELVNAA 510 Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + N SLQ + E+ A V +MT+HTAKGLE PVVF+ Sbjct: 511 HEYDANHTDGSLQGFLEEVALISDLDTVEDLAE--AVTLMTLHTAKGLEFPVVFISGMEE 568 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + H + L YVG+ Sbjct: 569 GLLPHSESRISEEEIEEERR----------------------------------LCYVGI 594 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA +L + +++ V F ++ + + Y+ Sbjct: 595 TRAMKRLFLTY-----TKRRMRYGQLIPCVASRFLDEIHADCMDRLDKTENHFSYEYQGK 649 Query: 716 THHPENTPLEREETIKQ 732 ++ EN +E + + + Sbjct: 650 SNSWENDAVEACDVLSE 666 >gi|323351871|ref|ZP_08087522.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66] gi|322121928|gb|EFX93660.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66] Length = 762 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 109/729 (14%), Positives = 223/729 (30%), Gaps = 139/729 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53 G ++ LI++ + + V+ N + ++A+ L Sbjct: 28 GAGSGKTRVLIHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKTEAQDCLIATF 87 Query: 54 -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEF 107 + + + ++ T K I+ ++ K + + L + Sbjct: 88 HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKNLNLDPKKWNERAILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D + + Y++ +++ +DF+DLI+ T L + Sbjct: 148 NDLIDEVAYANLAGDMYT--EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD-- 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 204 -VLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL ++V N + Sbjct: 253 GWRGADMQNILDFEKDYP--------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + ++ + D + A Sbjct: 305 N---------------------LW-------TQNEDGEEIVYYRANDEQDE-------AL 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI + KD VL R + + I Sbjct: 330 FVARTIDQLSREG----------YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMV 375 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D+++ I + D++S+ ++ P + KI + ++ Sbjct: 376 GGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISL 435 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + +L + + +L ++ Sbjct: 436 LDASANILLSPVKGKAAQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYSAALAAQA 495 Query: 522 GNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEV 572 E I+ ++EFL+ T +++ S L +L L + +EV Sbjct: 496 TLESQARIENIEEFLSVTKNFDESPDNPADESGLDKLSRFLNDLALIADTDDGDTESSEV 555 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFLV VF + Sbjct: 556 TLMTLHAAKGLEFPVVFLVGMEENVFPLSRASEDEDELEEERRL---------------- 599 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 YVG+TRA L + ++ K+N + + + Sbjct: 600 ------------------AYVGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDL 641 Query: 693 ERVKKIKLT 701 + + Sbjct: 642 LDYQGLARP 650 >gi|312875404|ref|ZP_07735408.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b] gi|311089067|gb|EFQ47507.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b] Length = 742 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 115/671 (17%), Positives = 219/671 (32%), Gaps = 131/671 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + +E E + + L ++ + +L ++ + + Sbjct: 66 AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ + NI +++ + L + ++++ + + + + Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ K +C++DF+DLI+ T L K + + + +IL+DE QD Sbjct: 172 ---AIVYREYQKNLKHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ L + + + VGD QSIY + GA + +L ++ + Sbjct: 226 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I+L ++RST IL + V +N + Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + A I I+ I Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D IKD+MA R Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481 + + D +S ++ +P I F+ + + K Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 + + + E+I A+ + + IL + E + LDEFL T + Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALRAEHTIEADTRLENLDEFLTVTKQ 521 Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + + + + L + + + N ++V +MT+H AKGLE PVVFLV Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F S EE RL YVG Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607 Query: 655 MTRASDQLIIC 665 +TRA QL + Sbjct: 608 ITRAKKQLYLT 618 >gi|315222686|ref|ZP_07864575.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211] gi|315188372|gb|EFU22098.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211] Length = 777 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 95/559 (16%), Positives = 181/559 (32%), Gaps = 101/559 (18%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 E+ +L+ T P+K + L + + D + Sbjct: 129 DPGEQRTLMKRILKTLNLDPKKWNE-----------RAILGTISNAKNDLIDEVAYAALA 177 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + Y++ +++ +DF+DLI+ T L K + Q +I Sbjct: 178 GDMYT--EIVAKCYEMYQKELRQSEAMDFDDLIMLTLRLFDKNPD---MLTYYQQRYQYI 232 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 +DE QDT+ Q+++++ L F + + VGD QSIY + GA+ + +L Sbjct: 233 HVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDF 282 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + ++ L ++RST IL + V N + + Sbjct: 283 EKDYP--------EAKVVLLEENYRSTKTILQAANDVIKNNRNRRPKN------------ 322 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + + + D + A +A TI + Sbjct: 323 ---------LW-------TQNADGENIVYYRANDEQDE-------ALFVAKTIDEL---- 355 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 +D +L R + I I I+D Sbjct: 356 -----SSTSDYVYRDFAILYRTNAQSRNIEEAL----LKANIPYTMVGGTKFYSRKEIRD 406 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-- 477 +++ I + D++SF ++ P + KI + ++ + + Sbjct: 407 VISYLNLIANTSDNISFERVVNEPKRGVGPGTVEKIRNFAAGQEMSLLDASSQIMLSPVK 466 Query: 478 ---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 I L + + L+L +Q ++ E I+ ++E Sbjct: 467 GKAAQAVFDFANLILNLREQLDELTVTEVVELVLEKTGYTEQLAAQATLESQARIENIEE 526 Query: 532 FLNFTLRN--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 FL+ T E+ L +++L T ++ V +MT+H AKGL Sbjct: 527 FLSVTKNFDENPENDTEETGLDRLSRFLNDLALIADTDDGDQESSE--VTLMTLHAAKGL 584 Query: 584 ESPVVFLVDTGSQVFSHKH 602 E PVVF++ VF Sbjct: 585 EFPVVFIIGMEENVFPLSR 603 >gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK] gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1] gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK] gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1] Length = 780 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 106/633 (16%), Positives = 184/633 (29%), Gaps = 125/633 (19%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + Y+ + LDF+DLI T +L+ I + HIL+DE Sbjct: 183 LARIVADVYGEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHILVDEY 239 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+ ++R LT + +P L VGD QSIY+F GA + + +R Sbjct: 240 QDTNHAQYVLVRELTGSGATESDESVAPAELCVVGDADQSIYAFRGATIRNIEDFERDFP 299 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I L ++RST IL + V + + Sbjct: 300 --------SATTILLEQNYRSTQTILNAANSVIARNAGRREKR----------------- 334 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + + + AR IA I + + Sbjct: 335 ----LW-------TDAGEGELIVGYVADNEHDE-------ARFIAQEIDALSDS------ 370 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 D+ V R + I + I + I+D++A Sbjct: 371 --IPDFSYNDVAVFYRTNNSSRAIEEVF----IRAGIPYKVVGGVRFYERREIRDIVAYL 424 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY---------IQKFANC 476 R + + D +S +L +P + + T + + Sbjct: 425 RVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVHAENTGLNFNDALVAAAEGNVPMLNTR 484 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 + + +L D +L R + + + +D L+E + Sbjct: 485 SEKAIAGFVALLDDLRGGLDGE-LGDLVEAVLDRTGYRAELEASSDPQDLARLDNLNELV 543 Query: 534 NFTLRN-----------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRI 574 + + L + LE+ H V + Sbjct: 544 SVAHEFSTDLANARALAEGDEDAQDEDVPDTGVLAAFLERVSLVADADDIPEHGSGVVTM 603 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+HTAKGLE P+VF+ +F H + Sbjct: 604 MTLHTAKGLEFPLVFVTGWEDGMFPHMRALGDPL-------------------------- 637 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 E RL YVG+TRA +L + + S+ + + + Sbjct: 638 --------ELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELID 689 Query: 695 VKKIKLTNSINKDEWI-AYEWSTHHPENTPLER 726 ++ + S A + T P T Sbjct: 690 WRRTEAPASSFSAPVGNAGRYGTPRPSPTRPAA 722 >gi|311064185|ref|YP_003970910.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum PRL2010] gi|310866504|gb|ADP35873.1| PcrA ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010] Length = 885 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 115/735 (15%), Positives = 219/735 (29%), Gaps = 124/735 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + + ER Sbjct: 75 AAAEMRERLEGLIGPVAQRMWVSTFHSACVRILRRDG---QSIGLASGFSIYDTADCERL 131 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-- 124 L L K + I + D K L Q++ + + + Sbjct: 132 VKLVGADLNIDL---KRYTPRAILSRISDYKNSLIGWQEQLKRYAPDYRPGQRGYQIGNF 188 Query: 125 -ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + A Y+ +DF+DLI T +LL+ + + + +IL+D Sbjct: 189 GDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQP---QVADYYRHKFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGK-------NTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+E+IR L G+ + P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYELIRELAGVDAAGQVVPDAPSAGRAGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V + + + Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIANNQGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + S + + A A IA I+ + Sbjct: 350 -------------LWTALGS-------GDPIVGYAADN-------AEQEAAWIAGEIARV 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + D+ ++ R + + + + Sbjct: 383 RAEEGT---------PYSDMAIMYRANAQSRALEGAL----VHAGLPYQLVGGTRFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 +KD +A + I++ D+++ +L P I + T + + + Sbjct: 430 EVKDAIAYLQAIVNPADNVNMRRILNVPKRGLGPRAESIIVSYADAHATTFWDGIEHLDQ 489 Query: 477 GI-------SKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 + + L A P + +L ++ + Sbjct: 490 IDGVPTRTGKQLAAFRDLMRSLSAFAAEHDGKPSEVVGEVLSQSGLLEELQRSEDPQDAS 549 Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582 ++ L + + EQN+ +L + + + + +V +MT+HTAKG Sbjct: 550 RVENLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHTAKG 609 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H Sbjct: 610 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDAD 635 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YVG+TRA +L + + + + ++N+ + + K+ + Sbjct: 636 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLIDWKRRETGM 695 Query: 703 SINKDEWIAYEWSTH 717 + W + Sbjct: 696 EGMRSGWSRRGFDDE 710 >gi|255692465|ref|ZP_05416140.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565] gi|260621733|gb|EEX44604.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565] Length = 789 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 98/673 (14%), Positives = 205/673 (30%), Gaps = 123/673 (18%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + Y E ++ +DF+DL++ T L + I + + +IL+DE QDT Sbjct: 175 AIRDIYTRYWERCRQAGAMDFDDLLVYTYILFRDYPE---ILARYQDQFRYILVDEYQDT 231 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q ++ L ++ + + VGD+ QSIYSF GA+ +L + Sbjct: 232 NYAQHSIVLQLAKE----------NQHVCVVGDDAQSIYSFRGADIDNILYFTKTYPN-- 279 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + +L ++RST I+ + + E + S Sbjct: 280 ------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS----------------- 316 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + + + +Y D + +A ++ + Sbjct: 317 ----------EKEKGEAIGVFQAYSDVEEGDI--------VANKVAELRREYH------- 351 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 D +L R + + R + IKD++A R + Sbjct: 352 --YGYADFAILYRTNAQSRIFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIAYFRLV 405 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FANCGISK 480 ++ D+ +F ++ P + + KI + +++ + + +K Sbjct: 406 VNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWSTLCEPLTYGLNINKGTHAK 465 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN--- 534 Q I I + ++ I+ E + ++E +N Sbjct: 466 LQGFRALIEGFITGQADKNAYEIGVDIIRQSGIMNDVCQDTSPENLSRKENIEELVNGMN 525 Query: 535 ---FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 + E N SL + +SE+ + + ++ +MTVH+AKGLE VF+V Sbjct: 526 DFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFKNVFVV 584 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 +F + EE RL Sbjct: 585 GLEENLFPSGMVGDSP----------------------------------RALEEERRLF 610 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV +TRA + + K + + D + ++ + + Sbjct: 611 YVAITRAEEHCYLSFAKTRFRYGKMELGSPSRFLRDIDIHYLKMPHEAGISRSVDEGAGR 670 Query: 712 YEWSTHHP--ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + + R E+K K + ++ + ++ ++ Sbjct: 671 FRREIEGGFTHSASPSRTTPFGSASSERKERPKAQIIAPSVPRNLKKVSTVSGGSQAMSS 730 Query: 770 LESLLSDNQTFNR 782 ++ Q R Sbjct: 731 GPVSVAGLQAGQR 743 >gi|189423552|ref|YP_001950729.1| UvrD/REP helicase [Geobacter lovleyi SZ] gi|189419811|gb|ACD94209.1| UvrD/REP helicase [Geobacter lovleyi SZ] Length = 736 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 99/649 (15%), Positives = 196/649 (30%), Gaps = 117/649 (18%) Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 ++R + + + A Y+E K+ LDF D+I+ T L ++ Sbjct: 140 ARIDDCKNRGLLPEELPAGDLWNQQFIRIYAAYQERLKRCNALDFGDMILQTVRLFEQFP 199 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + +L+DE QDT+ +Q+ +IR L + + L VGD+ Q Sbjct: 200 E---VLSRWQHRFQWLLVDEYQDTNPVQYRLIRLLAGE----------RQNLCVVGDDDQ 246 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIYS+ GA+ + +L ++ + ++I L ++RST IL V + Sbjct: 247 SIYSWRGADIRNILEFEKDFPQ--------VTVIRLEQNYRSTPTILQAAGAVVARNFGR 298 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + + G+ + S Sbjct: 299 KAKTLWTDNP-------DGEPIRCERL----------------------------ESDRA 323 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR ++ I+ + + ++ R + L+ I Sbjct: 324 EARFVSSEIALLQRNG----------LLLSEMAAFYRTNAQSRLLEEALAAE----GIPY 369 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHET 463 L IKD +A R + + DD+S ++ P + ++ R Sbjct: 370 HIVGGVRFYARLEIKDTLAYLRLLENPSDDVSLKRVINVPPRGIGAATVERVAELARQGQ 429 Query: 464 ETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 T++E ++ + SK ++ + +A + +L + Sbjct: 430 ITLFEAFERAVDSNLLGSGPRSKVAAFVELLQRFRRLAATQLMPELVRAVLEESGYLARL 489 Query: 518 ISRFGN---EVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVR 573 E ++ L + ++ + + L + + ++ A V Sbjct: 490 KESRDEEDSERLENLAQLVSAVEEFSTANPEAGLADFLEQVALVSDLE--RGEAGRPSVT 547 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE VF+V ++F H Sbjct: 548 LMTLHAAKGLEYKAVFMVGMEERLFPHVRSLDDPDG------------------------ 583 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 EE RL YVGMTRA ++L + + + + Sbjct: 584 ----------MEEERRLCYVGMTRARERLYLLYARRRMIFGQEQANLPSRFLKEIPAELM 633 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + + +S N + + + Sbjct: 634 ERNHVSCNPELPSSAQPKSSFSPAPSHNLAAVASAMAEVEVVPEPGDDY 682 >gi|188996189|ref|YP_001930440.1| UvrD/REP helicase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931256|gb|ACD65886.1| UvrD/REP helicase [Sulfurihydrogenibium sp. YO3AOP1] Length = 706 Score = 291 bits (744), Expect = 5e-76, Method: Composition-based stats. Identities = 103/545 (18%), Positives = 183/545 (33%), Gaps = 112/545 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YEE K + DF+DL+I T +L + + + ++IL+DE QDT+ IQ Sbjct: 170 VFEKYEEELKNSNAFDFDDLLIKTVKILSNHPE---VLERWRNKFDYILVDEYQDTNRIQ 226 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++++ L D T+ VGD Q IY++ GA P+ +L ++ Sbjct: 227 HKLLKLLVGD----------KHTITVVGDPAQCIYTWRGAHPENILDFEKDFP------- 269 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I++L ++RST IL + V S + + LW Sbjct: 270 -GTKIVKLERNYRSTKKILDCANAVISKSKGKWKGK------------------VLTLW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + + AR IA I + Sbjct: 310 ------TDKEEGEDIFLVPLENEKEE-------ARFIANKIKQLAQDG-----------S 345 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VLVR T I I + +KD++A + ++ + Sbjct: 346 YGDFAVLVRMTFLTRNIEEAF----ISNGIPYQVIGGLKFFERAEVKDILAYLKLAVNPK 401 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQHVIKYIHE 490 D SF L P + + I + + + + ++F K Q ++ + Sbjct: 402 DYASFERSLTVPPRGVGDKGLEYIKSNFKTDWIQALKDSYERFNKSVKIKLQEYLELMEY 461 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQNSYSSL 547 ++ A+F SP I+ ++ + + ++ ++E + E+ Sbjct: 462 VLENAKF-SPSKTAKEIVERIGYQEYLQKEYEKDWEDRVENINELIIALEEAEKEG---- 516 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + L E+ + N N+ +IMTVH AKGLE VF+ +F Sbjct: 517 KTLDQFFEESALMQAQDTIDNQNKAKIMTVHGAKGLEFDTVFVAGLEEGIFPSGRAFDDP 576 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 EE RL YV +TRA ++L + Sbjct: 577 T----------------------------------QLEEERRLFYVAITRAKNKLYLTYA 602 Query: 668 SNTSN 672 + Sbjct: 603 KERKS 607 >gi|315224086|ref|ZP_07865926.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287] gi|314945819|gb|EFS97828.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287] Length = 789 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 113/687 (16%), Positives = 223/687 (32%), Gaps = 120/687 (17%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K ++ ++ ++ I +R FN ++ ++ + + Y + K +DF+ Sbjct: 139 KYKRIQSRISSFKNSLITVRAYFNNPELMEADAMARQPRLGEIYQEYVDRCFKAGAMDFD 198 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K +IL+DE QDT+ Q+ ++++L + F Sbjct: 199 DLLLKTNELLN---LYPDVFAKYQNRFRYILVDEYQDTNHSQYLIVKALADRF------- 248 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIY+F GA +L K + +L ++RST +I Sbjct: 249 ---HNICVVGDDAQSIYAFRGANINNILNFKNDYPE--------AKEYKLEQNYRSTKNI 297 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + V + +++ + Sbjct: 298 VEAANSVIEHNKIRLEKVVF---------------------------TENELGEPIKVHR 330 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 S D+ R +A +I F N + + + VL R + I Sbjct: 331 SPTDADEG--------RFVASSI---------FENKMQHQLPNGNFAVLYRTNSQSRAIE 373 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD++A R I++ D+ + V ++ P E Sbjct: 374 DALR----KRDIPYRIYGGLSFYQRKEIKDMLAYLRLIINPNDEEALVRIINFPARGIGE 429 Query: 451 DDIFKICTQRHE-TETVYEYIQKFAN--------CGISKFQHVIKYIHELIHIAQFCSPH 501 + K+ + ++++E + K + I + Q + Sbjct: 430 TTMEKLTLAANHYKKSIFEIMYNINKLPELHINTTTKQKLTDFVVMILNFQALNQKANAF 489 Query: 502 DFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN---EQNSYSSLQELISELE 555 + + Q+F E ++ ++E LN +++ S L LE Sbjct: 490 EVAEQVAKKTGLLQEFKKDGTPEGIAKMENIEEMLNGMKDFVEGQEDVADSRASLSEYLE 549 Query: 556 QYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + + V +MT+H AKGLE P V++V +F Sbjct: 550 DVALATDMDKEIGDDDRVALMTIHLAKGLEFPYVYVVGMEEDLFPS-------------- 595 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + ++ EE RL YV +TRA Q + N Sbjct: 596 --------------------AMSIQSRNDLEEERRLFYVALTRAEKQAYLTYAENRYRWG 635 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 K + + + + ++N + + + + + L ++ I + Sbjct: 636 KLSDAEPSRFIEEIDERYLQYLTPSISNPNYRYKPLIDRDIFGEVDKSKLRLQKPISGIP 695 Query: 735 DEQKIPKKLFSPIKNDINEPYILNPST 761 + P + L S Sbjct: 696 PHKNAPTGEEQQKLRKLKPVNALYNSN 722 >gi|256820896|ref|YP_003142175.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] gi|256582479|gb|ACU93614.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] Length = 789 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 113/687 (16%), Positives = 223/687 (32%), Gaps = 120/687 (17%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K ++ ++ ++ I +R FN ++ ++ + + Y + K +DF+ Sbjct: 139 KYKRIQSRISSFKNSLITVRAYFNNPELMEADAMARQPRLGEIYQEYVDRCFKAGAMDFD 198 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K +IL+DE QDT+ Q+ ++++L + F Sbjct: 199 DLLLKTNELLN---LYPDVLAKYQNRFRYILVDEYQDTNHSQYLIVKALADRF------- 248 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIY+F GA +L K + +L ++RST +I Sbjct: 249 ---HNICVVGDDAQSIYAFRGANINNILNFKNDYPE--------AKEYKLEQNYRSTKNI 297 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + V + +++ + Sbjct: 298 VEAANSVIEHNKIRLEKVVF---------------------------TENELGEPIKVHR 330 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 S D+ R +A +I F N + + + VL R + I Sbjct: 331 SPTDADEG--------RFVASSI---------FENKMQHQLPNGNFAVLYRTNSQSRAIE 373 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD++A R I++ D+ + V ++ P E Sbjct: 374 DALR----KRDIPYRIYGGLSFYQRKEIKDMLAYLRLIINPNDEEALVRIINFPARGIGE 429 Query: 451 DDIFKICTQRHE-TETVYEYIQKFAN--------CGISKFQHVIKYIHELIHIAQFCSPH 501 + K+ + ++++E + K + I + Q + Sbjct: 430 TTMEKLTLAANHYKKSIFEIMYNINKLPELHINTTTKQKLTDFVVMILNFQALNQKANAF 489 Query: 502 DFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN---EQNSYSSLQELISELE 555 + + Q+F E ++ ++E LN +++ S L LE Sbjct: 490 EVAEQVAKKTGLLQEFKKDGTPEGIAKMENIEEMLNGMKDFVEGQEDVADSRASLSEYLE 549 Query: 556 QYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + + V +MT+H AKGLE P V++V +F Sbjct: 550 DVALATDMDKEIGDDDRVALMTIHLAKGLEFPYVYVVGMEEDLFPS-------------- 595 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + ++ EE RL YV +TRA Q + N Sbjct: 596 --------------------AMSIQSRNDLEEERRLFYVALTRAEKQAYLTYAENRYRWG 635 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 K + + + + ++N + + + + + L ++ I + Sbjct: 636 KLSDAEPSRFIEEIDERYLQYLTPSISNPNYRYKPLVDRDIFGEVDKSKLRLQKPISGIP 695 Query: 735 DEQKIPKKLFSPIKNDINEPYILNPST 761 + P + L S Sbjct: 696 PHKNAPIGEEQQKLRKLKPVNALYNSN 722 >gi|319942765|ref|ZP_08017069.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] gi|319803645|gb|EFW00595.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] Length = 816 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 117/748 (15%), Positives = 228/748 (30%), Gaps = 122/748 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L + + +L + + + + Sbjct: 29 GAGSGKTRVLTTRIAWLLEHNLATTGEILAVTFTNKAAKEMLTRLEGMIPYDLRRMWVGT 88 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L + L Q+ K + + +K +K + + K + Sbjct: 89 FHGLCNRILRIHAQEAGLPKTFQILDSGDQLSLVKRLMKAANIDVEKTDPKQVVNFINWC 148 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + L L L YE +K V+DF +L++ +LL + D+ + Sbjct: 149 KENGLRSSGVSAKDASDLRLG--LYQAYERECQKQGVVDFAELLLRCYELLTRNDL---V 203 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R + HIL+DE QDT+++Q+ ++ L + T + +FAVGD+ QSIY+F Sbjct: 204 RAHYQKRFRHILVDEFQDTNVLQYRWLKILAGEKLGPNGTSLNA--VFAVGDDDQSIYAF 261 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + I+L ++RST +L + + + + G Sbjct: 262 RGANIGNMADFLKDFHVE--------KPIKLEQNYRSTKTVLDAANALIANNDGRLGK-- 311 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 G G L + + S A + Sbjct: 312 --------NLWTSGSQGAKIL-------------------------VKELESEMDEAAWV 338 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 +I + R +L R + + + Sbjct: 339 VDSIRR--AQRLTGGDASWR-----QFAILYRTNAQSRALEAELTA----RGVPYRIYGG 387 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + +K+L+ R I + DD SF+ ++ P I + R ++++ Sbjct: 388 LRFFERAEVKNLLGYLRMITNPWDDTSFLRVVNFPTRGIGAKTIETLQESARASGQSLWA 447 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVID 527 + + + + I L AQ + D ++ A + G + ++ Sbjct: 448 TLIQMGDQLSGRLAAFRDLIFTLRETAQNMTLPDAVAHVIKASGLEACYEKDKDGPDRLE 507 Query: 528 VLDEFLNFTLRNEQNS--YSSLQEL-----------ISELEQYPPTIKRAHS-ANHNEVR 573 + E + +N L L Q N N V+ Sbjct: 508 NMKEVITAAEGWFKNERLPEDLLAFSPANDEVPTPMEGFLTQATLEAGDKSEGQNVNAVQ 567 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MTVH+AKGLE P VF+V +F H K Sbjct: 568 LMTVHSAKGLEFPWVFIVGAEEGIFPHFSAVKTVSEGGQGGLEEE--------------- 612 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 RL+YV +TRA ++L+ V + Sbjct: 613 --------------RRLMYVAITRAKERLVFTHCKVRRTYGTIFNNPLSSFVKEIPAELV 658 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPEN 721 +++ + + + + + ++ Sbjct: 659 QMEPLFDDDEDDDSDRQGGHFYGRDRDD 686 >gi|307354471|ref|YP_003895522.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571] gi|307157704|gb|ADN37084.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571] Length = 1004 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 144/916 (15%), Positives = 278/916 (30%), Gaps = 178/916 (19%) Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK--YLNAHYEEAKKKNCVLDFEDLI 153 +++L ++D + ++ + L+ + YE K++ +LDF+D+I Sbjct: 151 FRDELISAEDIEEYLEEKNAQETSADEDIYLGKLSDLLKVYREYENYKRREELLDFDDMI 210 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T L + + IR + + +IL+DE QDT+ Q E+I+ LT Sbjct: 211 HETVRLFRNKPD---IRRQYENRFRYILVDEFQDTNYAQLELIKLLTSG----------- 256 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 L VGD+ QSIY F GA V + + L ++R+T IL V Sbjct: 257 -HLCIVGDDDQSIYRFRGACEGNVDEFAGHF--------KDHKKVVLEENYRNTGKILRV 307 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 ++ + + + S + P Sbjct: 308 ARQLIECADGSCTKNLRSNR--------------------------GEGEPVI------- 334 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + + S+ + A +A I +++G + +I +L RKR + + Sbjct: 335 --VAECSNENTEAGYVADEIESLMGEGFL----------PGEIAILCRKRSECGKFHKIL 382 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF--NFSED 451 + I IKD ++ + + + + L + SE Sbjct: 383 ----DSRNIPCEFTGDAEFFAIPVIKDAVSYLKAVANPAESAIP---LNRMMRQAGVSET 435 Query: 452 DIFKICTQRHE-------TETVYEYIQKFANCGISK---FQHVIKYIHELIHIAQFCSPH 501 I +I T + + V E +++ + V + + L + Sbjct: 436 AILEINTGAKQIRREGGKGDGVLEAMKRCGTEEDPDTIVIREVAENVDALSAARHKKTLP 495 Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPP- 559 I+ + E + L+ L + + S + +L+ L Sbjct: 496 ALVREIVLRTGK----LYSKDREGVAALNRLYEIALEFSRINPSGEIGDLLDHLSLLRDL 551 Query: 560 -TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + + VRIMTVH +KG E VF+ D + F + K +P Sbjct: 552 SGDFGVNEKTGSGVRIMTVHQSKGKEFSAVFVTDLAERRFPLNYRSKPFRVPVDLSKSIR 611 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSN 677 P K+ ++E RLLYV MTRA ++L + N+ S Sbjct: 612 PG----------------DDEKELYKQEERRLLYVAMTRAKEKLYLTRAIRYGENKNDSK 655 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----LEREETIKQL 733 + + + D + + + A P + E I Sbjct: 656 PSVFLTEIDYLNNTDISIVSTDGGKNGKDNLISATGGPAEDPFSEENKLMKEAVAAIADK 715 Query: 734 MDEQKIPKKLFSPIKNDINEPY--------------------------------ILNPST 761 + K L ++E L+ S Sbjct: 716 RYRSAVGKILALEYVRSLDEGKEFDNREFLNIPFEKPAVPRRKPEPLIKPGDGTRLSASA 775 Query: 762 IDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813 + L F+ G H +++ + + + Sbjct: 776 LKLYDDCPLRFKFEKILRIPTEPRTYFSLGTTAHLIIEHLTKMKMGGETPSMEKAEDLLE 835 Query: 814 KLWPA----------KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863 + W ++ L+ + LE M + V + Sbjct: 836 RFWSPDAYSSQKHEREDRTRLIAHLNNYLEWEMNNPNI------PVETEMEFEIRVLGTP 889 Query: 864 ISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922 +G ID++ ++ + +YKT + + QL++Y +K+ + Sbjct: 890 FTGYIDRLERTESGGYAVVDYKTSKTPMSKNDA---KEDIQLNLYALCVKEKTGSLPEKV 946 Query: 923 LLIYVSEPKVFI-IPQ 937 L Y+ + K+ IP Sbjct: 947 SLFYLDKGKMVDYIPD 962 >gi|118575660|ref|YP_875403.1| superfamily I helicase [Cenarchaeum symbiosum A] gi|118194181|gb|ABK77099.1| superfamily I helicase [Cenarchaeum symbiosum A] Length = 977 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 133/870 (15%), Positives = 253/870 (29%), Gaps = 154/870 (17%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+ ++ ++DF+D++ L + +R + +HIL+DE+QD + Q Sbjct: 173 VYQRYQGHLREMGIIDFDDMVSEAVRLFR---ARDDVRSEYGGRYSHILVDELQDANYAQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 E++R + + AVGDE QSIY F GA + Sbjct: 230 LELVRLIAG-------------NITAVGDENQSIYGFQGAYTSGFENF--------DDIT 268 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++R T I + + + + Q G V Sbjct: 269 GGAETISLNNNYRCTKTIAGLAAQCIANTPSGS------------------QAGAVH--- 307 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 D + A IA I + + Sbjct: 308 ---------PEGSPVEIVECADEDSE-------AACIADRIVQIRSPGGESAGYS----- 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 I VL RK D + + + + ++L+ + Sbjct: 347 ---IAVLTRKIADGKKFSDELE----LRGVPARYSGGDGIFSAGPARELLTYLEIARAPA 399 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-----------F 481 + +L E DI I T+ + + I + Sbjct: 400 SAGGEINLLMK-KHGIPEGDIAVINTEAKKAAYNDIHGNDHVLEVIRRGGNSGVRKKAEL 458 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 +++ + ++I +A SP I G + + + L E + Sbjct: 459 AGLVRRLDKVITLAGSYSPGTLAYHIAVPLAGLFRNLEDGA--GAEHLREACRLATEYDL 516 Query: 542 NSYSS-LQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L L+ L A+ V + T+H +KG E VF+ D Sbjct: 517 LDPRGGLDGLVGYLWAANSDKNLRSDADAGGAVEVTTIHKSKGREFDAVFIADAVEDRLP 576 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K+ + + +P+ P K +E RLLYV MTRA Sbjct: 577 LKYKGRKYQVPTTLLHGRRP----------------QGKEKDRHMQEERRLLYVAMTRAK 620 Query: 660 DQLIICKHSNTSNEKKSNQRTWY---------DMVYDSFHNDERVKKIKLTNSINKDEWI 710 L I +++K ++ + + +V + ++++ + Sbjct: 621 KNLCITYSKEYASKKTESKPSRFLEEMQFRSNPLVRTFVFAGGPAQGAGTASTVSGLQEE 680 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKI-------PKKLFSPIK-------NDINEPYI 756 A + T +++ + L ++ P SP P Sbjct: 681 AMRAVSVGDHGTAVQKVTDLAALEYMKEHGGLDGFVPPAARSPSPGLGAGAGPAKPAPLR 740 Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLP---EHKRKNFI 805 L+ + I T K L G +IHK+L+ I + + Sbjct: 741 LSSTKIGTYKKCPLMYWFAHVMTIPSPPGIPMVMGGVIHKVLEKITDAQMNGQTPDEAGA 800 Query: 806 TSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862 + K A ++ ++ + ++V K Sbjct: 801 LAMLEGQLKYAVYDSRTSFEQSKEEAESMI--SWFVKWSAGSPNKPIAVEKKFELEIAGA 858 Query: 863 IISGRIDQISIS-QQNIFIFEYKTHH--HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 G ID++ + + + +YKT P +I QL++Y + K Y Sbjct: 859 EFRGSIDRVERTPDGGLVLIDYKTGRTKVSPGKIAEDV-----QLNLYAEAAKKLYKELP 913 Query: 920 LVCLLIYVSEPKVFI--IPQNKLNKAFAEI 947 +L+Y+ + + + + A I Sbjct: 914 EKAVLLYLESGETVEYRLDEASVKSAIGRI 943 >gi|116620297|ref|YP_822453.1| ATP-dependent DNA helicase Rep [Candidatus Solibacter usitatus Ellin6076] gi|116223459|gb|ABJ82168.1| ATP-dependent DNA helicase, Rep family [Candidatus Solibacter usitatus Ellin6076] Length = 788 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 128/797 (16%), Positives = 250/797 (31%), Gaps = 142/797 (17%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E + +D+ VS + + + + + + E++ Sbjct: 66 EMRERVAALLEDVPLDSMPTVSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDDEDQLQ 125 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 ++ + + T F ++ + + + K Q+ F ++ + Sbjct: 126 IIKAAYRTLGFDEKEFMQYRAALSRISHAKNTKVTPQEMFRDAVNKESEA---------- 175 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L YE+A + LDF+DL++ LL+ D + R ++ +++++IDE QD Sbjct: 176 --VAALYEEYEKALRNANALDFDDLLLEAVRLLRTDDAT---RESWNRRLSYVMIDEYQD 230 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E++R LTE + + VGDE QSIYS+ GA+ K +L ++ + Sbjct: 231 TNRSQYELMRLLTEQ----------HQNVCVVGDEDQSIYSWRGADIKNILDFEKDYPR- 279 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL V + +G Sbjct: 280 -------AKTIRLEQNYRSTKNILAAAGAVVENNKARKGKK------------------- 313 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + +DS + A IA T + ++ Sbjct: 314 --LW-------TESDSGELLGLYAGYDSENE-------ALFIADTTEKYLASNPGDH--- 354 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +L R + I R Y F IKD++A + Sbjct: 355 --------VAILYRTNSQSRQIEEALR----RYGRKYNVVGGFSFYQRAEIKDMVAYLKL 402 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQH--- 483 S D +S + ++ +P + +I R ++E I++ + + Sbjct: 403 ASSNVDSVSLMRVINTPARGIGRTTVEQIERYGRDHGLNLWESIERIIDDQQLSTRSQSS 462 Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 I EL +A S D IL R+ E ++ LDE +N Sbjct: 463 LVVFRNLIQELSLVASTSSLPDLIRHILERTGYRKMLQQEKTPESETRLENLDELINAAA 522 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + L L+ + V +MT+H AKGLE P+VFL + Sbjct: 523 DAHERG----ETLGDFLDNAALVADVDSYDEQSPVTLMTLHNAKGLEFPLVFLSGMELGL 578 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H YVGMTR Sbjct: 579 FPHSRSMNSEEALEEERRL----------------------------------CYVGMTR 604 Query: 658 ASDQLIICKHS-----NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 A +L++ +++S + V ++ + + + + + Sbjct: 605 ARKKLVLTWAKMRRRFGGGEQERSTASWFLSEVPENLIFNLGPRDEPGEVDLYSERYDVR 664 Query: 713 EWSTHHP------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + + + + ++ + + P + P P Sbjct: 665 QSARRNTYTGKTYNSLDNISQFFGERGLPFKPGQSAPAPPKPDLRTPPQYPRPIGSAPMP 724 Query: 767 KTNLESLLSDNQTFNRG 783 + + G Sbjct: 725 MKQVPPPPPPRKGARAG 741 >gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] Length = 842 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 102/673 (15%), Positives = 193/673 (28%), Gaps = 143/673 (21%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + L + Y+ + LDF+DLI T LL+ + Sbjct: 201 PEQASADAESDESELPGLVARVYTEYQRRLRAANALDFDDLIGETVALLQNHP---QVAE 257 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ Q+ ++R L +T P L VGD QSIY+F Sbjct: 258 YYRRRFRHVLVDEYQDTNHAQYVLVRELVGHHSAADDTEDAVPPSELCVVGDADQSIYAF 317 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + +R I L ++RST +IL+ + V + E + Sbjct: 318 RGATIRNIEEFERDFP--------DAETILLEQNYRSTQNILSAANAVIARNEGRREKR- 368 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + A + Sbjct: 369 --------------------LW-------TDSGEGDLIVGYVADNEHDE-------ASFV 394 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A I ++ D+ V R ++ + + + Sbjct: 395 AREIDRLVDQGE---------ANYGDVAVFYRTNNNSRALEEIF----IRMGLPYKVVGG 441 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 + ++D++A R + + +D +S +L +P + + + + Sbjct: 442 VRFYERKEVRDIVAYLRVLENPDDAVSLRRILNTPRRGIGDRAEACVAVHAEQRGIGFAA 501 Query: 470 IQKFANCGISKF---------QHVIKYIHELIHI-----AQFCSPHDFFTLILGAKKGRQ 515 + A G + + E+ A F + +L R Sbjct: 502 ALRDAAEGKVALLNTRAQRAIAGFLDLLEEIRAAGEQADADFPDVGNVVEAVLDRTGYRA 561 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQN----------------------SYSSLQEL 550 + + + +D L+E ++ SL Sbjct: 562 ELEASDDPQDGARLDNLNELVSVAREFSSEAYNNAVAAREEGILPEQAEGEPDPGSLAAF 621 Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + + T + V +MT+HTAKGLE PVVF+ F H Sbjct: 622 LERVSLVADTDQI-PDEGAGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPT-- 678 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 E RL YVG+TRA +L + + Sbjct: 679 --------------------------------ELAEERRLAYVGITRARQRLYLTRAVVR 706 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI--------NKDEWIAYEWSTHHPENT 722 S + + + + ++++ + + ++ + E Sbjct: 707 SGWGQPVSNPESRFLQEIPDHLIEWRRLEPSPATRGIRKRGGDEGLERDWTRGDGWSEPR 766 Query: 723 PLEREETIKQLMD 735 P R+ ++ Sbjct: 767 PGVRDRGPRRPAP 779 >gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551] gi|31792138|ref|NP_854631.1| ATP dependent DNA helicase UVRD1 [Mycobacterium bovis AF2122/97] gi|57116803|ref|YP_177772.1| ATP-dependent DNA helicase II UVRD1 [Mycobacterium tuberculosis H37Rv] gi|121636874|ref|YP_977097.1| putative ATP dependent DNA helicase uvrD1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660728|ref|YP_001282251.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium tuberculosis H37Ra] gi|148822158|ref|YP_001286912.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis F11] gi|167967811|ref|ZP_02550088.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis H37Ra] gi|224989345|ref|YP_002644032.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800024|ref|YP_003033025.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 1435] gi|254231256|ref|ZP_04924583.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C] gi|289555271|ref|ZP_06444481.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 605] gi|294996434|ref|ZP_06802125.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis 210] gi|297633471|ref|ZP_06951251.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN 4207] gi|297730456|ref|ZP_06959574.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN R506] gi|306775079|ref|ZP_07413416.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu001] gi|306782007|ref|ZP_07420344.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu002] gi|306783628|ref|ZP_07421950.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu003] gi|306787992|ref|ZP_07426314.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu004] gi|306792329|ref|ZP_07430631.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu005] gi|306796727|ref|ZP_07435029.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu006] gi|306802615|ref|ZP_07439283.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu008] gi|306806794|ref|ZP_07443462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu007] gi|306966993|ref|ZP_07479654.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu009] gi|306971186|ref|ZP_07483847.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu010] gi|307078913|ref|ZP_07488083.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu011] gi|307083471|ref|ZP_07492584.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu012] gi|313657784|ref|ZP_07814664.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN V2475] gi|61229774|sp|P0A5A3|PCRA_MYCTU RecName: Full=ATP-dependent DNA helicase pcrA gi|61229776|sp|P0A5A4|PCRA_MYCBO RecName: Full=ATP-dependent DNA helicase pcrA gi|13880539|gb|AAK45224.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551] gi|31617726|emb|CAD93835.1| PROBABLE ATP DEPENDENT DNA HELICASE UVRD1 [Mycobacterium bovis AF2122/97] gi|41353625|emb|CAE55341.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 [Mycobacterium tuberculosis H37Rv] gi|121492521|emb|CAL70989.1| Probable ATP dependent dna helicase uvrD1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600315|gb|EAY59325.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C] gi|148504880|gb|ABQ72689.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium tuberculosis H37Ra] gi|148720685|gb|ABR05310.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis F11] gi|224772458|dbj|BAH25264.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321527|gb|ACT26130.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 1435] gi|289439903|gb|EFD22396.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 605] gi|308216426|gb|EFO75825.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu001] gi|308325244|gb|EFP14095.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu002] gi|308331626|gb|EFP20477.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu003] gi|308335437|gb|EFP24288.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu004] gi|308339243|gb|EFP28094.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu005] gi|308342888|gb|EFP31739.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu006] gi|308346806|gb|EFP35657.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu007] gi|308350722|gb|EFP39573.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu008] gi|308355383|gb|EFP44234.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu009] gi|308359322|gb|EFP48173.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu010] gi|308363229|gb|EFP52080.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu011] gi|308366886|gb|EFP55737.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu012] gi|323720660|gb|EGB29738.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CDC1551A] gi|328459767|gb|AEB05190.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 4207] Length = 771 Score = 291 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 113/741 (15%), Positives = 205/741 (27%), Gaps = 136/741 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + L ++ Sbjct: 79 AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + + + Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L N P L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL+ + V + + Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + I+D++A R Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + A Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ EL + +L R++ + + +D L+E ++ Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542 Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581 + L LE+ H V +MT+HTAK Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF+ +F H Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E RL YVG+TRA +L + + S+ + + + ++ Sbjct: 630 -ELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPK 688 Query: 702 NSINKDEWIAYEWSTHHPENT 722 S + A + + P T Sbjct: 689 PSFSAPVSGAGRFGSARPSPT 709 >gi|241889348|ref|ZP_04776649.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella haemolysans ATCC 10379] gi|241863891|gb|EER68272.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella haemolysans ATCC 10379] Length = 1217 Score = 291 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 158/1022 (15%), Positives = 347/1022 (33%), Gaps = 152/1022 (14%) Query: 28 VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ------ 81 + NK L+ + T + + +QQ E +LS L + + Sbjct: 233 IDKFNKVSELTQKESIATAIDFCKYVQQYLINCKKESSLDILSLVNLDETKKEKLARYVD 292 Query: 82 -KNIITQEINKKSPDLKEKLKKSQDEFIK----------------IRDRFNTYKMFKSTL 124 +I + ++ ++KE + K +F + D N +++ + Sbjct: 293 EDDISIKSNQEQLEEIKELISKLNTQFETEDNIFDAGLLSEVHGVLIDYLNYFRVIEKMN 352 Query: 125 ASLT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQE 176 L K L+ + + K++N LDF DL L + + V + Sbjct: 353 LLAKSITSLLKKLHNDFIKRKRENNFLDFSDLNHLAIKALTREENGEIVPSEAAQYYKNY 412 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 I +DE QD + +Q ++ + + F VGD KQ+IY F G+ P Sbjct: 413 FLEIYVDEYQDNNNLQEYILNLIKGE----------GVHFFRVGDVKQAIYGFRGSNPDL 462 Query: 237 VLREKRINQKRATNA-----------GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 ++ +K + + I L +FRS +IL + +F+ + Sbjct: 463 FEQKYNSYRKLEIDNYSEKQEYSFESDSEGICIVLKENFRSDVNILKSSNYIFNRLMGNK 522 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + + + ++ + ++ + ++S Sbjct: 523 NAGVSYGEDSALYYPKAKEKNSSEIIPTRLINGK-------INYFTGELLEDKKSYREQS 575 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 IAY I I + D +LVR + Y I + Sbjct: 576 IENIAYEILLGIKNGR----------KYSDYAILVRNSTKMSSFKEVF----AKYNIPLF 621 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 ++ T+ L + RF+ + D S + +L + +F++S D++ K+ + + Sbjct: 622 FKEKVGFTESNTFNILYNILRFLDNTNRDASLLAILHTEIFDYSNDELLKLSITKGKNL- 680 Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524 ++ N K + + + + ++ + S + I + ++ +E Sbjct: 681 ----FERLQNSEKEKDYNTVNLLKKWLNFSLNNSLPNLLECIAIDTDFKNYLVTIDTNDE 736 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKG 582 +D + F++ + L L+++L+ ++ V + T+H +KG Sbjct: 737 ELDYYENFIDIVNDYQNIDNK-LSGLVNQLKIIKNDEVFETKKRTPNDSVTLSTIHISKG 795 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMP-------SLNDDPGIPIWIPQSKSRNNIVSDL 635 LE +VF+ D + + ++ + + + N + Sbjct: 796 LEYKIVFVADLDTSFSKRGYTGELLFTEIFGLSIKAEELAQKFGLISSNIEKLNQLYKYN 855 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKKSNQRTWYDMVYDSFHNDER 694 +K +EE R LYV +TRA + L + + N +K+ + Y + + + ++ Sbjct: 856 SILIKLREREEEVRNLYVALTRAENSLHLVSPNGVELNNEKTKDKPLYQSLIEDDNFEKI 915 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE- 753 + + + E+ PL ++E D Q+ K+ S +++ ++ Sbjct: 916 LNNLLSDYGEEFIFENEKDALFKDYESEPLVKDEEDSSGFDLQEFYKQFESKQQDESSKQ 975 Query: 754 -------------PYILNPSTIDTKGKTNLESL-----------------LSDNQTFNRG 783 P + S + + E S ++ RG Sbjct: 976 SDNHTIEVKNKVFPAKTSYSALKKINTKDHEWNYKKEKRGYLELTTLKKSTSTSKAILRG 1035 Query: 784 LIIHKLLQVIFTLPEHKRK--------------NFITSYCTKNAKLWPAKEYKNL----- 824 IIHKL + I + + + + ++ +E+ N+ Sbjct: 1036 NIIHKLFEKIVNDTRAGVEISDVVSYIDSLKKTDNLLQNIKEQ-RILSQEEFDNINNKDD 1094 Query: 825 LLSITRLLENPMMTTA-MSCDSYSEVSVS-----GKINCPKK---DIIISGRIDQIS-IS 874 + IT + + ++ S +E++ + ++ + D+I+ G +D IS Sbjct: 1095 IEKITNFINSELIKLVSKSKFCQTEIAFTTAKKAKELYDDSESDIDVILQGVVDLFIKIS 1154 Query: 875 QQNIFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + I +YKT H + E + H QL IY++ + + Y ++ + + Sbjct: 1155 DEEAIIVDYKTDHVTSRNGEEVLRDRHREQLRIYKEAVAEYYKLNNIKTYVYSYVLSSLI 1214 Query: 934 II 935 I Sbjct: 1215 EI 1216 >gi|258593628|emb|CBE69969.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 991 Score = 291 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 140/901 (15%), Positives = 280/901 (31%), Gaps = 132/901 (14%) Query: 60 QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 + + F L S + Q ++ + ++ D + Sbjct: 139 ELPLDYFRPLGSPLRHVQALLQLFSRAKDEDVGPEQYASYAEELVGRATAAPDDKTLAEQ 198 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + + Y+E + LDF DL++ T DLL++ + + ++ + + Sbjct: 199 ATREMEI----ARVYRQYQELMAREGKLDFGDLMVRTLDLLREHPL---VLQRLQERFRY 251 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 IL+DE QDT+ Q+++++ LT S R + VGD+ QSI+ F GA +L Sbjct: 252 ILVDEFQDTNYAQFQIVKLLTA----------SHRNVTVVGDDDQSIFKFRGASISNILS 301 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 +R I L ++RST+ +L ++ N L R + Sbjct: 302 FRREFP--------DAETIVLAENYRSTSSVLDAAYRLIQHN-NPDRLEYQEGVDKRLKP 352 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 V+ Q + A + I +I Sbjct: 353 CNGDGP-AVESVVFQTYQEE--------------------------ADWVVEKIEELIEA 385 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + DI +LVR+ D L R L I + L D I+ Sbjct: 386 ---------KACALGDIAILVRRNSDA---DPLLRALNMK-GIPWSFSGAKGLYDRDEIR 432 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYE---------- 468 +++ R + D LS + S ++ D+ R + ++YE Sbjct: 433 LVISFLRLLADPYDSLSLFHLAGSDIYGLPAADLTLCNAHARRKHRSLYEVLLDLTRRPG 492 Query: 469 YIQKFANCGISKFQHVIKYIHELIHI----AQFCSPHDFFTLILGAKKGRQQFISRF--- 521 + + + + +L A+ + + ++ ++ + Sbjct: 493 AVPELSGVSTEGIAAATALLSDLHRYLDKAAREVTGRILYEFLMEQPGYGKRLLHSNSSR 552 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEVRIMT 576 ++ I L F R + + + L +E A V ++T Sbjct: 553 DHQRISNLAAFFGLVQRFGEVAPQDRVAGFVPYLTMLIEAGENPPVAEGEAAEEGVAVLT 612 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H AKGLE VFLV + F ++ +P +P Sbjct: 613 LHKAKGLEFEAVFLVGLVEKRFPSIDRREAIPLPDELIKETLPSGDFH------------ 660 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 Q+E RL YVGMTRA L + + + +++ + + Sbjct: 661 -------QQEERRLFYVGMTRAKRHLFLTRAKDYGTKRE------WKRSRFLAEALALPR 707 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 + + E + ++ L + +I L P+K Sbjct: 708 EEEEQPWRGTAEAVIGRYAPPPQVAIDLAIRADTPLSLSHYQIDDYLTCPLKYKYVHILR 767 Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 + + T G +H+ +Q T + + W Sbjct: 768 V---------------PVLREHTIIYGAALHRAVQAYNTQRLTGQTMSLDDLIKSFEAHW 812 Query: 817 PAKEYKNLLLSITRLLE-NPMMTTAMSCDSYSEVS--VSGKINCPKKDIIISGRIDQISI 873 + + + R+ E +T + + + V + D +++G +D++ Sbjct: 813 VNEGFISREHEERRMQEGRDALTRFHAGAAKGPLPTSVEKRFRFQLGDDLVTGIMDRVDE 872 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933 + I +YK+ Q+ QL++Y ++S L +++ V Sbjct: 873 REGETVIIDYKSSSVRDQKAADKEARESQQLALYALAYRESIGRLPDRVELHFLTPGGVI 932 Query: 934 I 934 + Sbjct: 933 V 933 >gi|225850544|ref|YP_002730778.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1] gi|225645384|gb|ACO03570.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1] Length = 696 Score = 291 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 109/566 (19%), Positives = 196/566 (34%), Gaps = 110/566 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YEE + +DF+DL+IN L + I + ++IL+DE QDT+ + Sbjct: 167 EIYKKYEEHLAFSNAMDFDDLLINVVKLFNQNPD---ILKRWQNRFDYILVDEYQDTNKV 223 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q ++++ L D + VGD +Q IY++ GA P+ +L ++ Sbjct: 224 QHQILKLLVGD----------RDCITVVGDPQQCIYTWRGANPENILEFEKDFP------ 267 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++RST IL++ +KV S + W Sbjct: 268 --GTKIIKLERNYRSTEKILSIANKVISGSKGR--------------------------W 299 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ + + + ++ + D+ + I I +I + Sbjct: 300 KEKILKLWTDRKGGEDIYLIRLDT------DKHESGFIGKMIKKIISDE---------GY 344 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +D VL+R + I LK I + +KD++A RF L Sbjct: 345 SYRDFAVLIRMSYVSRNIEEAFINLK----IPYQIVGGVKFFERAEVKDILAYLRFALLP 400 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +D +F ++ P + I KI +R + + + + + Q ++ I Sbjct: 401 KDTQAFKRIINLPSRGIGDKTIEKIRSFYERDWLQALEDSYNHLSPKIRMRVQEFLEIIE 460 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQNSYSS 546 + P + A + +S++ + I ++E N E++ S Sbjct: 461 TVRKY-GNEKPSQMAKYVFDAINYEEYLVSKYPKDYEDRIANVNELFNALKEVERSGKSL 519 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L LE+ + + N V+IMTVH +KGLE PVVF+ +F Sbjct: 520 L----EFLEESSLSQAQDSIQEENSVKIMTVHASKGLEFPVVFIAGLEEGIFPSGRSF-- 573 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 EE RL YV +TRA ++L + Sbjct: 574 --------------------------------EDIEQMEEERRLFYVAITRAKEKLFLTY 601 Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHND 692 + T +D Sbjct: 602 SKYRAGYGSHYNETKPSRFLQDIKDD 627 >gi|310778912|ref|YP_003967245.1| ATP-dependent DNA helicase, Rep family [Ilyobacter polytropus DSM 2926] gi|309748235|gb|ADO82897.1| ATP-dependent DNA helicase, Rep family [Ilyobacter polytropus DSM 2926] Length = 725 Score = 291 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 106/553 (19%), Positives = 190/553 (34%), Gaps = 119/553 (21%) Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y K N +DF D+I+NTN L+ IR K+ ++++DE Q Sbjct: 167 YKTVSSVYKKYNSGLKNNNAMDFADIIVNTNRLM----DIQKIREKVQDRYQYVMVDEYQ 222 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ IQ+++I + E + + + VGDE QSIY F GA + +L ++ + Sbjct: 223 DTNNIQYQIINKIAEKY----------KNICVVGDEDQSIYGFRGANIQNILDFEKDYPE 272 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +I+L ++RSTA IL + + E+++G + Sbjct: 273 AF--------VIKLEQNYRSTAHILEAANSIIKNNESSKGKN------------------ 306 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + + A A + I+ + ++ Sbjct: 307 ---LW------TEKNKGELIRIF--------ESDDARHEAYLVLQEINRLKNSNR----- 344 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 KD +L R + L + I + IKD+MA Sbjct: 345 -----NYKDFTILYRTNAQSRAFEE----LFIKFNIPYKVFGGMQFYQRMEIKDIMAYLN 395 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK----- 480 I + D L+ + +L P + KI ++ +++E + + Sbjct: 396 VINNSLDSLNLLRILNVPKRKIGVKSVEKIAEFAENKGVSIFEALGRSEEIEGLSKNLKI 455 Query: 481 -FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 + I +Q+ + F ++ + ++ G E + ++E N Sbjct: 456 VLSEFHSMLLNFIEESQYMPVSEIFDGVVNSIGYFS-YLESLGEEAESRIENIEELRNSI 514 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 E+N + L LE + V++MT+H +KGLE PVVF+V Sbjct: 515 SEMEKNQEN--LTLGEYLESTALISATDKLEEEQDYVKLMTIHNSKGLEFPVVFVVGVED 572 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +VF + EE RL YV + Sbjct: 573 EVFPGS----------------------------------KVEYDPTQLEEERRLCYVAI 598 Query: 656 TRASDQLIICKHS 668 TRA ++L + Sbjct: 599 TRAEEKLYMYYAK 611 >gi|227543585|ref|ZP_03973634.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A] gi|300909386|ref|ZP_07126847.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112] gi|227186425|gb|EEI66496.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A] gi|300893251|gb|EFK86610.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112] Length = 757 Score = 291 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 118/813 (14%), Positives = 239/813 (29%), Gaps = 153/813 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V N + ++ L S + Sbjct: 31 GAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIWVST 90 Query: 66 FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKS 122 F L L + T + L +++ + + K R + + Sbjct: 91 FHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNA 150 Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 A LT + Y++ + N LDF+DLI+ T +LL+ Sbjct: 151 KNALLTPDDYSKEANSMFENMVARAYKLYQQELETNQALDFDDLIMKTIELLESD---QE 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L + + + L VGD QSIY Sbjct: 208 TLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKY----------QNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA +L + + + L ++RST IL ++V + + + Sbjct: 258 WRGANMNNILNFEHDYPQ--------AKTVMLEQNYRSTQTILNAANEVIANNLYRKKKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + S+ + + A+ Sbjct: 310 ---------------------LW-------TENGQGDKISYYRAQNEHDE-------AQF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I +K D +L R + ++ I Sbjct: 335 IVSKIKE---------EQEKHGYHFNDFAILYRTNAQSRMVEETF----LKSSIPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467 D I+D++A I++ D +SF ++ +P + + +E Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNTPKRGIGLTSVEHLRNFANENGWTLL 441 Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + +K + + L A++ + D IL + Sbjct: 442 KAAQNVDTASEITARTRNKIDEFGQLMANLTKQAEYLTLTDLTEQILELSGYNKMLSDDR 501 Query: 522 GNE---VIDVLDEFLNFTLRNEQNS----YSSLQELISELEQYPPTIKRAH-SANHNEVR 573 E + LDEF + T ++ +LQ++I+ L + V Sbjct: 502 SLEAQARRENLDEFKSVTQEYDEQHKDDDDPNLQKIINFLADLALVSDQDDVDEQAPAVT 561 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFLV +F Sbjct: 562 LMTLHAAKGLEFPVVFLVGMEEGIFPLSRALMEDDELEEERRL----------------- 604 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 YVG+TRA +L + + ++Y ++ Sbjct: 605 -----------------AYVGITRAKKKLYLT-------------NAFSRLLYGRIQRNQ 634 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + ++ +S + ++ P +R + ++ Sbjct: 635 PSRFVEEIDSELLQFENSPSGNSIKDSKLPFDRAAATAT-----TYRDQQKRTYRSAGKR 689 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786 + + +++ + +G ++ Sbjct: 690 VKPITNTGTGADKVGWKTGDKVEHKKWGQGTVV 722 >gi|253580235|ref|ZP_04857501.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848328|gb|EES76292.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1269 Score = 291 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 123/731 (16%), Positives = 258/731 (35%), Gaps = 69/731 (9%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----L 100 + L ++LQ+ ++ + +L + T + + ++ ++ DL+++ L Sbjct: 253 SDLLLIRSLQELAEKRDYNGTAEILMKPSFARLSTKKAADVDEQKKQRVKDLRDEEKGIL 312 Query: 101 KKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 K+ + + ++ + + L + EAK++ +LDF D+ Sbjct: 313 KELGQRYFQSAEKELLEVIRYIRGPVEMLVELTVGFKERFGEAKREKNILDFTDMEHFAL 372 Query: 158 DLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L + + ++ + + +L+DE QD++L+Q + + Sbjct: 373 QILMTKEGEEIHMSQAARELSAKYDEVLVDEYQDSNLVQELLT-------TAVSGWINQK 425 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 + +F VGD KQSIY F A P+ + + + + I+L +FRS +L Sbjct: 426 KNIFMVGDVKQSIYRFRLARPELFMEKYKSYSTE----EAQEQRIDLHKNFRSREQVLES 481 Query: 274 VDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGT------VQLWEQVVSQHDSQCNPQ 325 V+ +F E+ G++ D + +S V L E+ + + + Sbjct: 482 VNFIFRQIMGEDLGGITYDKDAALYPGASFPEGESEEFVKTEVLLVERDGEELSDVQDYE 541 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKR 383 + + ++ + A IA I ++G + I + R ++ DI++L+R Sbjct: 542 DAGASGNRREMENQTGQELEALAIAQRIKEIVGKEQIVDKEKKEYRSVEYGDIVILLRT- 600 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 R + I V R I ++ + + D+ + +L+S Sbjct: 601 --AYGWAETFREVLASQGIPVYCTSRTGYFSATEIVTVLNYLKVCDNPLQDIPLMGVLRS 658 Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------------------ 479 P+ + ++ ++ Q + I Sbjct: 659 PIVGCTSQELAELRIQYPDGLLYESVSAYAGENEIPEKELDPDKLKSELLNSNLRTDEKN 718 Query: 480 ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLN 534 K + + + ++ ++A + H+ +L + G + L + Sbjct: 719 SLNIKLKGFLSLLEKVRNMATYTPVHELILYVLKETGYGDYARALPGGEQRFANLTMLVE 778 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVF 589 + E+ SY L + +EQ A + V IMT+H +KGLE PVVF Sbjct: 779 KAMDYEKTSYRGLFNFVRYIEQLQAYQVDYGEVNLTGAGNTAVEIMTIHKSKGLEFPVVF 838 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 + G Q + + P L I + + + + + L K + E R Sbjct: 839 VAGMGKQFNFQDMNAGLLLHPELGIGADAIIPEKRVIASSLNKQVIRRQLLKESLGEELR 898 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 +LYV MTRA ++LI+ ++ + + D + R+K + Sbjct: 899 VLYVAMTRAKEKLILTGTVGKLEKQMMSLSRFLDEEEELLPLGTRMKAKNYWAFVLPALV 958 Query: 710 IAYEWSTHHPE 720 S E Sbjct: 959 RHRAMSELLWE 969 Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 107/320 (33%), Gaps = 21/320 (6%) Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 N + ++ L + Y + + + + Q T + Sbjct: 943 RMKAKNYWAFVLPALVRHRAMSELLWEYGILMKKQPGIYDDISEFVIKKITVRQMTEKAV 1002 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + + + + + DE + E P + E I + + K+ + Sbjct: 1003 LIQAGNQMQEEYLKNWDENKVYDEVVKEEIEKRFSFVYPYKYLEDIPVKVSVSDLKKRSW 1062 Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHK 800 ++++ E ++ D + + + + + + + RG H++++ + E Sbjct: 1063 HD-ESELEENISVSAEEQDEEQEAPVPAFMAEKQEEYKGAARGTAYHRVMECL-DYAEAD 1120 Query: 801 RKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA----MSCDSYSEVSV-- 851 + + + + ++ +E + + + I R +E+ + M Y E Sbjct: 1121 TEEQLRAQLKRLLESQKMTEQEAECIRIRDIRRFVESGLGQRMKKAAMKKHLYREQPFVI 1180 Query: 852 -----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906 + +++ G ID + ++ I + +YKT + + + + QL Sbjct: 1181 QRNASMLDDGWKNETVLVQGIIDAYFMEEEEIVLVDYKTDRVRRGQEQKLINLYHVQLED 1240 Query: 907 YEKILKDSYPNKSLVCLLIY 926 Y + L+ K + +IY Sbjct: 1241 YARALERM-TGKRVKEKIIY 1259 >gi|297581630|ref|ZP_06943552.1| DNA helicase II [Vibrio cholerae RC385] gi|297534037|gb|EFH72876.1| DNA helicase II [Vibrio cholerae RC385] Length = 723 Score = 291 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N S ++ I+ L H + + + G Sbjct: 441 SIGLLNDQVLTGRAASALSRFVELINSLEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21] gi|76585760|gb|EAO62311.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21] Length = 644 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 118/715 (16%), Positives = 221/715 (30%), Gaps = 139/715 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61 G ++ L ++ + + V+ N + ++A L A+Q Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87 Query: 62 ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107 E + + F Q+ ++ + I + + D + L + Sbjct: 88 HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D K + Y+E +++ +DF+DLI+ T L + Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL + V + +N + Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW +Q + + + A Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI N++ KD VL R + I I Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D++A + + D++SF ++ P + KI + ++ Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 436 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + I L + + +L + + Sbjct: 437 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496 Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571 E I+ ++EFL+ T + + L L L + + E Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ VF Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 EE RL YVG+TRA L + + + K++ + Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNVNTRALFGKTSYNRPTRFIR 637 >gi|25027486|ref|NP_737540.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] gi|23492768|dbj|BAC17740.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] Length = 825 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 211/705 (29%), Gaps = 152/705 (21%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K + ++ +LK +L + N ++ T+ + Y++ Sbjct: 174 KKFSARTLSSAISNLKNELISPSEALADAERTHNPFE---------TVVARVYVEYQQRL 224 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 ++ +DF+DLI + + + + H+LIDE QDT+ Q+++I L Sbjct: 225 RRANAVDFDDLIGEVVRIFTEHP---QVAEHYRRRFRHVLIDEYQDTNHAQYQLIAILVG 281 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 P L VGD QSIY+F GA + + +R I L Sbjct: 282 RP------DQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDF--------TDARTILLE 327 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RST IL+ + V S EN + + LW + Sbjct: 328 QNYRSTQTILSAANAVISQNENRRPKN---------------------LWTAL------G 360 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + + + + AR IA I + + D+ ++ R Sbjct: 361 EGEKIIGYVADNEHDE--------ARFIASEIDELADRG----------LSYSDMAIMYR 402 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + + + + I+D++A R + + +D ++ ++ Sbjct: 403 TNNSSRALEEVF----IRTGVPYKVVGGTKFYERKEIRDVIAYLRVLENPDDTVNLRRII 458 Query: 442 KSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS-----------KFQHVIKYIH 489 +P + + + + + + A + KF ++ + Sbjct: 459 NTPKRGIGDRAQAFVALHAENNRISFGQALVDAAAGNVELLGGRGRNAVGKFNELMDTLR 518 Query: 490 -ELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 EL+ + + + IL + + + + +D L+E ++ Sbjct: 519 GELLSMVNEVTGMPDIGQVISRILDITGYKAELEASNDPQDGARLDNLNELVSVAREFSS 578 Query: 542 N----------------------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + + SLQ + + + V +MT+HT Sbjct: 579 DAANRMAYDTMDGSEPELDDSEPAPGSLQAFLERVSLVADADQI-PDNEQGLVTLMTLHT 637 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFL F H L Sbjct: 638 AKGLEFPVVFLTGWEDGQFPH----------------------------------LRSLG 663 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 E RL YVG+TRA +L + + S+ + + ++ + Sbjct: 664 DAKELAEERRLAYVGITRARQRLYVTRAMLRSSWGNPVTNPASRFLQEVPEGLIDWRREE 723 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 NS + + + K+ Sbjct: 724 PANSFGSAWAPSGSPYGGGHPSGGYGSQTRRSAPSRPSIPTKQSR 768 >gi|317121134|ref|YP_004101137.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM 12885] gi|315591114|gb|ADU50410.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM 12885] Length = 791 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 103/601 (17%), Positives = 190/601 (31%), Gaps = 114/601 (18%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + A Y+E ++N +DF+DL++ LL + + + + HIL+DE QDT+ Sbjct: 168 VAAVYAAYQERLQRNGAMDFDDLLMQAVRLL---EEAPDVLAYYQRRFVHILVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++R L R LF VGD QS+Y + GA+ +LR + Sbjct: 225 HAQYRLLRLLAA----------GHRNLFVVGDPDQSVYRWRGADITNILRFEEDYP---- 270 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++ L L++RSTA IL V + S Sbjct: 271 ----DARVVRLELNYRSTASILGAAQAVIEHNTQRKEKQLRSVH---------------- 310 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + D + A +A + + G + Sbjct: 311 ------------GEGARVVVFGAADEHDE-------AWFVAREMERLHGEE--------- 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 ++ VL R + ++ I + +KD++A R + Sbjct: 343 GYGYGEMAVLYRTHAQSRVLEETL----LRRGIPYRIVGGLKFYERKEVKDILAYLRLAV 398 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFA------NCGISKFQ 482 + +D +S ++ P E + ++ E + + + + + Sbjct: 399 NPDDRISLRRVINVPRRGIGEATLARLEAYLDREGVGLLDALARAEDIPGVTRPQAAALM 458 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 I +L +A+ +D L L ++ + + + L E L+ Sbjct: 459 AFGGVIADLRAMAEQRPAYDVIALALDRTGYKEMLEQEQTPDAMSRLENLKELLSVARDF 518 Query: 540 EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ + L+ L + + V +MT+H+AKGLE VVF+ VF Sbjct: 519 ERQRGAGDAPLVDFLAEVALVSDVDQLDEGARAVSLMTLHSAKGLEFDVVFITGMEEGVF 578 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H EE RL YVGMTRA Sbjct: 579 PHSRSLDDP----------------------------------HELEEERRLCYVGMTRA 604 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +L +C + + ++ + ++ + + + W Sbjct: 605 RRRLYMCFTRQRTLFGATRRQVPSRFLEEADQRYLEWQGLPPGSDEPAFGDGGDAWEAGA 664 Query: 719 P 719 P Sbjct: 665 P 665 >gi|15640220|ref|NP_229847.1| DNA-dependent helicase II [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121728028|ref|ZP_01681067.1| DNA helicase II [Vibrio cholerae V52] gi|147675309|ref|YP_001218450.1| DNA-dependent helicase II [Vibrio cholerae O395] gi|153818562|ref|ZP_01971229.1| DNA helicase II [Vibrio cholerae NCTC 8457] gi|153821587|ref|ZP_01974254.1| DNA helicase II [Vibrio cholerae B33] gi|229507007|ref|ZP_04396515.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286] gi|229509377|ref|ZP_04398860.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33] gi|229516324|ref|ZP_04405772.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9] gi|229606515|ref|YP_002877163.1| DNA-dependent helicase II [Vibrio cholerae MJ-1236] gi|254226330|ref|ZP_04919920.1| DNA helicase II [Vibrio cholerae V51] gi|254851318|ref|ZP_05240668.1| DNA-dependent helicase II [Vibrio cholerae MO10] gi|255744002|ref|ZP_05417956.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101] gi|262153639|ref|ZP_06028766.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1] gi|262167390|ref|ZP_06035098.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27] gi|9654595|gb|AAF93366.1| DNA helicase II [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629731|gb|EAX62150.1| DNA helicase II [Vibrio cholerae V52] gi|125621135|gb|EAZ49479.1| DNA helicase II [Vibrio cholerae V51] gi|126510901|gb|EAZ73495.1| DNA helicase II [Vibrio cholerae NCTC 8457] gi|126520874|gb|EAZ78097.1| DNA helicase II [Vibrio cholerae B33] gi|146317192|gb|ABQ21731.1| DNA helicase II [Vibrio cholerae O395] gi|227012037|gb|ACP08247.1| DNA helicase II [Vibrio cholerae O395] gi|229346750|gb|EEO11720.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9] gi|229353692|gb|EEO18629.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33] gi|229356112|gb|EEO21031.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286] gi|229369170|gb|ACQ59593.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae MJ-1236] gi|254847023|gb|EET25437.1| DNA-dependent helicase II [Vibrio cholerae MO10] gi|255738267|gb|EET93658.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101] gi|262024192|gb|EEY42885.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27] gi|262030580|gb|EEY49217.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1] Length = 723 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ +LL+ IR Sbjct: 151 KDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TDGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N S ++ I+ L H + + + G Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|307284517|ref|ZP_07564679.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860] gi|306503194|gb|EFM72448.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860] Length = 791 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 216/635 (34%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L+ + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLMKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|88808097|ref|ZP_01123608.1| UvrD/REP helicase [Synechococcus sp. WH 7805] gi|88788136|gb|EAR19292.1| UvrD/REP helicase [Synechococcus sp. WH 7805] Length = 794 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 106/630 (16%), Positives = 210/630 (33%), Gaps = 99/630 (15%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L + Y +A N LDF+DL++ LL++ + +R + H+L+DE QD Sbjct: 202 KLTADVYRRYRKALAANNALDFDDLLLMPVQLLQQNE---QVRGYWHRRFAHVLVDEYQD 258 Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+++I+ L D + + + R++F VGD QSIYSF A+ ++ + Sbjct: 259 TNRTQYDLIKLLVTDGKDPQTYDNWTGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + + + ++++L ++RSTA IL + + + T Sbjct: 319 QEPDEATR-TMVKLEENYRSTATILEAANALIANNSERIDKVLRPTR------------- 364 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 + S T D + + A + + + M Sbjct: 365 ---------------GEGELISLTRCDDEIAE-------AEAVVHRLRMM--------EA 394 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D+ L R + + ++I V D IKD++ R Sbjct: 395 ANPELTWGDMACLYRTNAQSRALEESL----VRWRIPYVVVGGLRFYDRREIKDVLGYLR 450 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479 +++ D +S + ++ P + I ++ ++ ++ E ++ Sbjct: 451 LLINPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAR 510 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536 + I+ L P + ++ + I+ +E + L E +N Sbjct: 511 GLLQFCELINGLRERVSTTPPSELIQQVMELSGYVSELITEGSDEAEERRRNLQELVNAG 570 Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L+ E+N L+ ++ + + V +MT+H++KGLE PVV LV Sbjct: 571 LQYQEENEEGDLEGFLASAALASDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F ++ EE RL YVG+ Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++L + S + + +I + + Sbjct: 655 TRAKERLFLSHASERRLWGGMREPAVPSVFLSELPEALVQGEIPRSGGAAIRREQRLDRL 714 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFS 745 T P + P + +S Sbjct: 715 TRVDREQPSSAPANAVRRRQAGPAPGRSWS 744 >gi|156564011|ref|YP_001429750.1| PcrA helicase [Bacillus phage 0305phi8-36] gi|154622708|gb|ABS83588.1| PcrA helicase [Bacillus phage 0305phi8-36] Length = 657 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 120/679 (17%), Positives = 228/679 (33%), Gaps = 128/679 (18%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSLL-SSFF 73 + + P V+ NK + E GN +A+ + + S Sbjct: 60 LENGIDPRRILTVTFTNKAATEMKERIGNEVGEARAKKIMIGTFHSLAVRWLHQYYSEAG 119 Query: 74 LTQKFTPQKNIITQEINKK------SPDLKEKLKKSQDEFIKIRDRFNTYKMFKS-TLAS 126 L + +T + T ++ K+ D K+ + +Q +++ K F+ Sbjct: 120 LKKNWTIFDSEDTNKVIKELLKSNNMDDSKQNVYATQSRISNLKNDMILPKDFRKQMEPQ 179 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y++ +N +DF+DLI+ LL+ +R K + +I+ DE Q Sbjct: 180 DKSFARIYERYQDRMARNNAVDFDDLIMKMVILLESN---TEVRRKFQRRYKYIMCDEYQ 236 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ +I+++ D +F VGD+ Q IY + GA +++L ++ Sbjct: 237 DTNECQYRMIKNIVGD----------KNNIFVVGDDYQGIYGWRGANIEKILNFQKDYP- 285 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +++L ++RST I+T + + Sbjct: 286 -------GTKVVKLEQNYRSTNTIVTAGNAIMKHNTKQMNK------------------- 319 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 D + + + D AR IA I N+ Sbjct: 320 --------TCFTDKGMGEKIRKYEAPDDE--------QEARFIAQEIQNL---------C 354 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + +DI +L R + L+ + I F + IKD+M+ + Sbjct: 355 TFDGYKYEDIALLYRTNVQSRLLEDQF----IRHNIPYNMVSGFSFYERKEIKDIMSWMQ 410 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHV- 484 ++ ++D++ +L + I +I + +++YE ++ F Sbjct: 411 LAVNPDNDIACDRILNMQA-GVGKTTIKQIKDKANEKNKSIYEVVEYFNPKTAKAKAAFV 469 Query: 485 -----IKYIHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 + ++ L D LI + ++ E ID + E Sbjct: 470 GLTDTVARLNALYEAGKSVSDQPITDMLELIFKYTQYIEKLQETGKEEDFRRIDNIKELT 529 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 EQ + L L+Q ++ N ++V++MT+HT+KGLE PVVF++ Sbjct: 530 KIAKGYEQENKD--PHLQDFLDQIALQSQQDKVVNQDKVQLMTLHTSKGLEYPVVFMIGM 587 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F H + EE RL YV Sbjct: 588 EEGLFPHSRSLSDTV----------------------------------QLEEERRLAYV 613 Query: 654 GMTRASDQLIICKHSNTSN 672 G+TRA + L + Sbjct: 614 GITRAQEILYFTHAERRMD 632 >gi|290580396|ref|YP_003484788.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254997295|dbj|BAH87896.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 758 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 106/665 (15%), Positives = 205/665 (30%), Gaps = 121/665 (18%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156 + L + + D + L Y+ +++ +DF+DLI+ T Sbjct: 137 RAVLAAISNAKNDLLDEIAYENRAGDSYT--QLVAKCYKAYQSELRQSEAMDFDDLIMLT 194 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 L + + Q +I +DE QDT+ Q+++++ L F + + Sbjct: 195 LRLFDQNPD---VLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNI 241 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD QSIY + GA+ + +L ++ + ++ L ++RS+ IL + Sbjct: 242 CVVGDADQSIYGWRGADMQNILDFEKDYPE--------AKVVLLEENYRSSKKILQAAND 293 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 V N + LW + +Q + D Sbjct: 294 VIKNNRNRRDKK---------------------LW-------TQNDDGEQIVYYRADDEQ 325 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + A +A TI+N++ KD VL R + I Sbjct: 326 DE-------AVFVASTIANIVRE---------MGKNFKDFAVLYRTNAQSRTIEEAL--- 366 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I I+D++A I + D++SF ++ P + KI Sbjct: 367 -LKSNIPYTMVGGTKFYSRKEIRDIIAYLNVIANTADNISFERIVNEPKRGVGPGTLEKI 425 Query: 457 -CTQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + ++ E + + + I +L S + +L Sbjct: 426 RNFANLQGMSLLEASENIMLSSIKGKAVQAVYELANMIIDLRSKLDHYSITEVVEAVLDR 485 Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISEL-EQYPPT 560 + + E I+ ++EFL+ T + + L+ L L + Sbjct: 486 SGYLEVLEIQKTLESQTRIENIEEFLSVTKNFDDTTDDVPENETGLERLSRFLNDLALIA 545 Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 + EV +MT+H AKGLE P+VFL+ VF + Sbjct: 546 DTDEAESESAEVTLMTLHAAKGLEFPIVFLIGLEEGVFPLSRSMEEESELEEERRL---- 601 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680 YVG+TRA L I ++ + +++ Sbjct: 602 ------------------------------AYVGITRAEQMLFITNANSRTLYGRTSYNR 631 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 + + + + + + T + L + +++ + K Sbjct: 632 ESRFIQEISEDLLVHQGLARPARASFKVSYQDSNETKFGQGMSLAQALQARKVASQPKKS 691 Query: 741 KKLFS 745 S Sbjct: 692 PFSNS 696 >gi|153800815|ref|ZP_01955401.1| DNA helicase II [Vibrio cholerae MZO-3] gi|229521109|ref|ZP_04410530.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80] gi|124123646|gb|EAY42389.1| DNA helicase II [Vibrio cholerae MZO-3] gi|229341994|gb|EEO06995.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80] gi|327483072|gb|AEA77479.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae LMA3894-4] Length = 723 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N S ++ I+ L H + + + G Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|253998105|ref|YP_003050168.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] gi|253984784|gb|ACT49641.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] Length = 720 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 95/576 (16%), Positives = 194/576 (33%), Gaps = 112/576 (19%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K+ ++ + A + + Y+ ++ V+DF +L++ +LL Sbjct: 144 KQVMGYINSCKEEGLRANAVDAYDAHSQRMREIFEEYDRQCQREGVVDFAELLLRCYELL 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + A IR +IL+DE QDT+ +Q+ ++ L + +FAVG Sbjct: 204 SRD---ASIRQHYQSRFKYILVDEFQDTNRLQYLWLKLLAG----------ADNCVFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + ++ R +I++L ++RS +IL + + + Sbjct: 251 DDDQSIYAFRGARVGNMRDFEQDFNVR--------NIVKLEQNYRSHGNILDAANAIITH 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 N G + LW S + ++ + + Sbjct: 303 NRNRLGKN---------------------LW-------TSAGKGEPIRVYQAYNDIDE-- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I ++ T + +I +L R + ++ Sbjct: 333 -----ANFIVDEIKSLHSEGT----------ELSEIALLYRSNAQSRVLEHAL----FSA 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 + + IK +A R I + DD + + ++ P + ++ Sbjct: 374 GLPYRVYGGLRFFERAEIKHALAYLRLIANPNDDTALLRVINFPTRGIGARSLEQLQEAA 433 Query: 460 RHETETVYEYIQKFANCGIS--KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 R E ++++ G + + I ++ A + + + R + Sbjct: 434 RAEDCSLWQAAINKVGNGRPGKGVEGFVALIRQMAEEATGLTLPEMAEIATTLSGLRTHY 493 Query: 518 ISRF-GNEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRI 574 + G + I LDE ++ + N+ +L + ++ + +++ Sbjct: 494 QNEKEGEDRIANLDELISAAVTFVNNNEDAGTLTDFLTFASLEAGE--HQAEVGRDALQL 551 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MTVH AKGLE VF+ + H+ Sbjct: 552 MTVHAAKGLEFRTVFISGLEEGLCPHEQSL------------------------------ 581 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + + EE RL+YV +TRA +L + + Sbjct: 582 ----YETNGLEEERRLMYVAVTRARQRLYLSHAQSR 613 >gi|224282901|ref|ZP_03646223.1| UvrD/REP helicase [Bifidobacterium bifidum NCIMB 41171] gi|313140060|ref|ZP_07802253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB 41171] gi|313132570|gb|EFR50187.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB 41171] Length = 885 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 114/735 (15%), Positives = 217/735 (29%), Gaps = 124/735 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L + Sbjct: 75 AAAEMRERLEGLIGPVAQRMWVSTFHSACVRILRRDGQSI-----GLASGFSIYDTADC- 128 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-- 124 L K + I + D K L Q++ + + + Sbjct: 129 ERLVKLIGADLNIDLKRYTPRAILSRISDYKNSLIGWQEQLKRYAPDYRPGQRGYQIGNF 188 Query: 125 -ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + A Y+ +DF+DLI T +LL+ + + + +IL+D Sbjct: 189 GDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQP---QVADYYRHKFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGK-------NTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+E+IR L G+ + P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYELIRELAGVDAAGQVVPDAPSAGRAGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V + + + Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIANNQGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + A A IA I+ + Sbjct: 350 -------------LWTAL-------GIGDPIVGYAADN-------AEQEAAWIAGEIARV 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + D+ ++ R + + + + Sbjct: 383 RAEEGT---------PYSDMAIMYRANAQSRALEGAL----VHAGLPYQLVGGTRFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 +KD +A + I++ D+++ +L P I T ++ I Sbjct: 430 EVKDAIAYLQAIVNPADNVNMRRILNVPKRGLGPRAESIIVSYADAHATTFWDGIDHLDQ 489 Query: 476 ------CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 + + L A P + +L ++ + Sbjct: 490 IDGVPTRTGKQLAAFRDLMRSLSAFAAEHDGKPSEVVGEVLSQSGLLEELQRSEDPQDAS 549 Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582 ++ L + + EQN+ +L + + + + +V +MT+HTAKG Sbjct: 550 RVENLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHTAKG 609 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H Sbjct: 610 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDAD 635 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YVG+TRA +L + + + + ++N+ + + K+ + Sbjct: 636 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLIDWKRRETGM 695 Query: 703 SINKDEWIAYEWSTH 717 + W + Sbjct: 696 EGMRSGWSRRGFDDE 710 >gi|113477645|ref|YP_723706.1| ATP-dependent DNA helicase Rep [Trichodesmium erythraeum IMS101] gi|110168693|gb|ABG53233.1| ATP-dependent DNA helicase, Rep family [Trichodesmium erythraeum IMS101] Length = 781 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 112/604 (18%), Positives = 198/604 (32%), Gaps = 103/604 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139 K I+T+++N + + + +++ + ++ + + Y++ Sbjct: 159 KQIVTKQLNLDDKKFEPR--SVRYAISNAKNQGMSPLEYQRAEPDYRGRVIAEVYGIYQD 216 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 N LDF+DLI +L ++ + I Q NHIL+DE QDT+ Q+ IR L Sbjct: 217 NLAANNALDFDDLIRIPVELFRQNE---QILAYWYQRFNHILVDEYQDTNRTQYNFIRFL 273 Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + K + R++F VGD QSIYSF A+ +L + + + ++I Sbjct: 274 ATNGEDPKYIKNWENRSIFVVGDVDQSIYSFRMADYTILLDFQNDFGDGLADEYTQ-TMI 332 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318 +L ++RS +IL V +K+ + T I Sbjct: 333 KLEENYRSRENILAVANKLIENNTQRIDKTLKPTRGI----------------------- 369 Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378 + + + + E I I+ + G V Sbjct: 370 ----GEEIYCYEAENELEEAE--------FICSKIAEITDQYPDLDLGS--------FAV 409 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R + + Y I V D IKD +A R I + D +S + Sbjct: 410 LYRTNSQSRSLEEKL----IHYDIKYVIIGGLRFYDRKEIKDALAYLRVIANPADTVSLL 465 Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHEL 491 ++ +P + I + + ++E I A + I L Sbjct: 466 RIINTPRRGIGKATIDSLLNASSQMGIPLWEIINDQASVNALAGRSSKAVNKFAEVIQHL 525 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548 + + + IL + + + L E + + ++++ + Sbjct: 526 QDELENLTALEIVERILENSGYIENLKKQDTEDADNRLANLGELCSAVAQFQEDNEDT-- 583 Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 L S L V +MT+H+AKGLE PVVF+V + H Sbjct: 584 TLGSFLANASLASNLDNLQDGQEAVSLMTLHSAKGLEFPVVFIVGLEQGLLPHFRSINDP 643 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 + EE RL YVG+TRA +QL Sbjct: 644 LS----------------------------------LEEERRLCYVGITRAEEQLFFSYA 669 Query: 668 SNTS 671 + Sbjct: 670 TERR 673 >gi|259507108|ref|ZP_05750008.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314] gi|259165386|gb|EEW49940.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314] Length = 824 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 107/705 (15%), Positives = 211/705 (29%), Gaps = 152/705 (21%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K + ++ +LK +L + N ++ T+ + Y++ Sbjct: 173 KKFSARTLSSAISNLKNELISPSEALADAERTHNPFE---------TVVARVYVEYQQRL 223 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 ++ +DF+DLI + + + + H+LIDE QDT+ Q+++I L Sbjct: 224 RRANAVDFDDLIGEVVRIFTEHP---QVAEHYRRRFRHVLIDEYQDTNHAQYQLIAILVG 280 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 P L VGD QSIY+F GA + + +R I L Sbjct: 281 RP------DQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDF--------TDARTILLE 326 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RST IL+ + V S EN + + LW + Sbjct: 327 QNYRSTQTILSAANAVISQNENRRPKN---------------------LWTAL------G 359 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + + + + AR IA I + + D+ ++ R Sbjct: 360 EGEKIIGYVADNEHDE--------ARFIASEIDELADRG----------LSYSDMAIMYR 401 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + + + + I+D++A R + + +D ++ ++ Sbjct: 402 TNNSSRALEEVF----IRTGVPYKVVGGTKFYERKEIRDVIAYLRVLENPDDTVNLRRII 457 Query: 442 KSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS-----------KFQHVIKYIH 489 +P + + + + + + A + KF ++ + Sbjct: 458 NTPKRGIGDRAQAFVALHAENNRISFGQALVDAAAGNVELLGGRGRNAVGKFNELMDTLR 517 Query: 490 -ELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 EL+ + + + IL + + + + +D L+E ++ Sbjct: 518 GELLSMVNEVTGMPDIGQVISRILDITGYKAELEASNDPQDGARLDNLNELVSVAREFSS 577 Query: 542 N----------------------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + + SLQ + + + V +MT+HT Sbjct: 578 DAANRMAYDTMDGSEPELDDSEPAPGSLQAFLERVSLVADADQI-PDNEQGLVTLMTLHT 636 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFL F H L Sbjct: 637 AKGLEFPVVFLTGWEDGQFPH----------------------------------LRSLG 662 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 E RL YVG+TRA +L + + S+ + + ++ + Sbjct: 663 DAKELAEERRLAYVGITRARQRLYVTRAMLRSSWGNPVTNPASRFLQEVPEGLIDWRREE 722 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 NS + + + K+ Sbjct: 723 PANSFGSAWAPSGSPYGGGHPSGGYGSQTRRSAPSRPSIPTKQSR 767 >gi|312887473|ref|ZP_07747072.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] gi|311300113|gb|EFQ77183.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] Length = 758 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 99/630 (15%), Positives = 196/630 (31%), Gaps = 115/630 (18%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + +Y + +DF+DL+ TN+LLK + + YK + ++++DE QDT+ Sbjct: 173 LGKIYENYVNRCFRAGAMDFDDLLYKTNELLKTHND---VLYKYQNKFKYLMVDEYQDTN 229 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +++ L S + + VGD+ QSIY+F GA + +L ++ Sbjct: 230 FSQYLIVKKLA----------SINQNICVVGDDAQSIYAFRGANIQNILNFEKDYP---- 275 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + +L ++RST +I+ V + + S + + S Sbjct: 276 ----DLKVFKLEQNYRSTQNIVNVANSIISNNKEQLKKNVFS------------------ 313 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + + + + ++ D + A I + + Sbjct: 314 ---------EKEAGDKIKVMRAFSD----NEEGKMTAEAIFQ-------------DHANK 347 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 ++ D +L R + + R L I IKDL++ R Sbjct: 348 GMKWNDFAILYRTNAQSRSMEEGLRKL----NIPYKIYGGLSFYQRKEIKDLISYFRLTF 403 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGISKFQHVIK-- 486 + D+ + ++ P + + +I + + +E I S+ + + Sbjct: 404 NPNDEEALKRVINYPKRGIGDTTVDRIIVSAGQNNISPWEAIVNPTQFLDSRTANTVANF 463 Query: 487 --YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 I I + S +D I + E + + E LN Sbjct: 464 GMMIQSFQVITKTMSAYDSALYIAQHSGLLKDLYEDKSVEGLNRYENIQELLNGIKEFSE 523 Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E L + ++ K + V +MT+H++KGLE P VF+V +F Sbjct: 524 REDLEEKGLDIFMQDVALLTNDDKDKNKDAD-TVSLMTIHSSKGLEFPQVFVVGLEENLF 582 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++ EE RL YV +TRA Sbjct: 583 PSQMSLNS----------------------------------RTDLEEERRLFYVAVTRA 608 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 +L I ++ + + + + + Sbjct: 609 ESKLTISYATSRFKFGTLINCEPSRFLDEIDAQYLELDFTAKKAPAGNPFFEDERSAWAT 668 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + T + I K P Sbjct: 669 KDTFSKPKAATPATNIKTTSILAKAHVPTP 698 >gi|284029231|ref|YP_003379162.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836] gi|283808524|gb|ADB30363.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836] Length = 773 Score = 290 bits (742), Expect = 8e-76, Method: Composition-based stats. Identities = 124/712 (17%), Positives = 224/712 (31%), Gaps = 124/712 (17%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LS 70 +D P ++ NK + E + +A+ + ++ +S Sbjct: 70 ARDAHPGSILAITFTNKAAAEMRERVVELVGPRAKLMWVSTFHSSCVRILRRDIKRFGIS 129 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 S F T + ++T + D+ + L + ++ D K++ Sbjct: 130 STFSIYDDTDSRRLMTLVCRELDLDVKRYNPRAVLNWISTQKNELIDHETAA--SKTSNH 187 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 Y+E + LDF+DL++ T +LL+ +R + H+L+DE Sbjct: 188 LEETYAECYRIYQERLAQANALDFDDLLMTTVNLLQ---AFPEVREYYRRRFRHVLVDEY 244 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ Q+ +IR L + G + P L VGD QSIY+F GA + +L ++ Sbjct: 245 QDTNHAQYTLIRELCGEDEPGGSGPVVPPAELMVVGDSDQSIYAFRGATIRNILAFEQDF 304 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST IL+ + V S E + S Sbjct: 305 --------AGAETILLEQNYRSTQTILSAANAVISRNEGRMAKNLWS------------- 343 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 Q +Q + + + A+ +A I + D Sbjct: 344 ---------------DQGQGEQIAVYVADNEHDE-------AQFVADEIDRLTDAD---- 377 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 ++ D+ V R + + + + ++D +A Sbjct: 378 -----GVKPSDVAVFYRTNAQSRVFEEVF----IRTGHPYKVVGGVRFYERKEVRDALAY 428 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------ 478 R +++ ED +S ++ P + I + + A Sbjct: 429 LRVLVNPEDTVSLRRIMNVPKRGIGDRAEAAIEALAARDRISFAQAMRRAQDAPAMASRS 488 Query: 479 -SKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 + Q + + EL + P D + L ++ + ++ LDEF+ Sbjct: 489 VNAVQSFVDILDELTAMVDSGAPPDDILDVALHRSGYYEELQKSPDPQDETRLENLDEFI 548 Query: 534 NFTLRN-----EQNSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 + S LQ + + + V +MT+HTAKGLE PV Sbjct: 549 SVAREFVEERTAAGEPSDLQAFLERVALVADADQIPDAVDDGGVVTLMTLHTAKGLEFPV 608 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VFL VF H EE Sbjct: 609 VFLTGMEDGVFPHSRSLT----------------------------------DMKELEEE 634 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 RL YVG+TRA +L I + + S + + ++ + Sbjct: 635 RRLAYVGITRARQRLAISRAAVRSAYGAPQHNPPSRFLEEIPAELLDWRRDE 686 >gi|117927584|ref|YP_872135.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B] gi|117648047|gb|ABK52149.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B] Length = 763 Score = 290 bits (742), Expect = 8e-76, Method: Composition-based stats. Identities = 113/628 (17%), Positives = 202/628 (32%), Gaps = 116/628 (18%) Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 +++ + Y++ ++ DF+DLI++T +L+ I + + H Sbjct: 175 RRASTHMEKAIAAVYRQYQQRLRQAGAFDFDDLIMSTVSMLQ---AFPEIAAQYRRRFRH 231 Query: 180 ILIDEVQDTSLIQWEVIRSLTED-----------FFVGKNTHSSPRTLFAVGDEKQSIYS 228 +L+DE QDT+ Q+ ++R L + +P L VGD QSIY+ Sbjct: 232 VLVDEYQDTNHAQYVLLRELVGPTVPRYAVDGEPLQPDRAGDGAPPELMVVGDADQSIYA 291 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F GA + ++ +R ++I L ++RST IL + V + + Sbjct: 292 FRGATIRNIIEFERDFP--------DATVITLEQNYRSTQTILRAANAVIEKNADRRPKK 343 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + D + A Sbjct: 344 ---------------------LW-------TDAGDGVPIVGFVADDEHGE-------AAF 368 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I ++ KDI V R + + + Sbjct: 369 VAEEIDRLVDEG---------AATFKDIAVFYRTNAQSRVFEEAF----LRVGLPYKVVG 415 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 + ++D++A R + + ED LS +L P E I E + Sbjct: 416 GVRFYERREVRDILAYLRVLANPEDVLSLRRILNVPRRGIGERAEACIDALAVRERVSFA 475 Query: 468 EYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 E ++++ A S QH + + EL +A+ P D ++ + + Sbjct: 476 EALRRYDEAPGLAPRSASAVQHFLSLLDELRAVAESAPPGDVVEAVIERTGYLAELAASG 535 Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNE-VRIMT 576 + + + E + E+N+ L + + ++ + A+ + V +MT Sbjct: 536 DPQDESRSENVRELVTVAREFEENNPGGRLTDFLEQVSLVSDADEIPDDADGDGVVTLMT 595 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +HTAKGLE PVVFL VF H+ Sbjct: 596 LHTAKGLEFPVVFLTGLEEGVFPHQRSFDDP----------------------------- 626 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 E RL YVG+TRA +L + + + V D + Sbjct: 627 -----KQMAEERRLAYVGITRARQRLYLTRAVTRALWGAPQVFPPSQFVADIPEALVDWR 681 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPL 724 + S + A S P P+ Sbjct: 682 RADFGASASSSAVRASAASAARPTTAPV 709 >gi|153825962|ref|ZP_01978629.1| DNA helicase II [Vibrio cholerae MZO-2] gi|149740370|gb|EDM54506.1| DNA helicase II [Vibrio cholerae MZO-2] Length = 723 Score = 290 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 117/690 (16%), Positives = 220/690 (31%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N S ++ I+ L H + + + G Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P VF+V +F + Sbjct: 561 SAKGLEFPQVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|229524854|ref|ZP_04414259.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis VL426] gi|229338435|gb|EEO03452.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis VL426] Length = 723 Score = 290 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRHDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N S ++ I+ L H + + + G Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|270157203|ref|ZP_06185860.1| DNA helicase II [Legionella longbeachae D-4968] gi|289164396|ref|YP_003454534.1| DNA helicase II [Legionella longbeachae NSW150] gi|269989228|gb|EEZ95482.1| DNA helicase II [Legionella longbeachae D-4968] gi|288857569|emb|CBJ11407.1| DNA helicase II [Legionella longbeachae NSW150] Length = 721 Score = 290 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 111/579 (19%), Positives = 193/579 (33%), Gaps = 117/579 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YE+A + V+DF +L++ T++LL+ I + Q IL+DE QDT+ IQ Sbjct: 173 IYRAYEQACQTAGVIDFAELLLRTHELLRDNPE---ILHHYRQRFQAILVDEFQDTNTIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + + AVGD+ QSIY + GA+ + + + R + Sbjct: 230 YAWIRLLAGEHTA----------VLAVGDDDQSIYGWRGAKVENIQQFARDFKNTL---- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RSTA IL + + + + G LW Sbjct: 276 ----TIRLEQNYRSTATILDAANALITNNHSRMGK---------------------DLW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 ++ S F+ L + AR + I I Sbjct: 310 ------TDGATGEKILVYSAFNELDE-------ARFVCERIMMEINQG----------AS 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 A DI +L R + ++ +I+ D +KD +A R +++ Sbjct: 347 ADDIAILYRSNAQSRVLEEAL----LRARIAYRIYGGLRFFDRAEVKDALAYLRLLVNPN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCGISKFQHVI 485 DD +F ++ P E + + + E +++ + A S I Sbjct: 403 DDTAFERVVNFPTRGIGEKTLDDLRYYAKSEQCSLWHAAKILLESGGMAQRAGSALAKFI 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN--E 540 + I +L + + ++ + +D L E +N + + Sbjct: 463 ELIEQLQQNTVEMELDEQLSTVVQLSGLYAHFSKIKGDKSESRLDNLQELINAAKQFRYD 522 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 Q + + + L + + V +MT+H AKGLE P+VFLV VF Sbjct: 523 QEEDEVIPLVNAFLAHASLEAGEMQADEHERYVHLMTIHAAKGLEFPMVFLVGMEEGVFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 K + EE RL YVGMTRA Sbjct: 583 GKQSLEEPG----------------------------------RLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 +LI+ + + + ++ Sbjct: 609 RKLILSYAEIRRQYGREEYHRPSRFLRELPQEFLDEIRV 647 >gi|332042510|gb|EGI78712.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4] Length = 779 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 108/625 (17%), Positives = 206/625 (32%), Gaps = 119/625 (19%) Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAH 136 + K + ++ K+ + ++ ++ I ++ F ++ ++ + + A Sbjct: 122 GSIIKEMGLEKDVYKTKQVYSRISSYKNSLITVKAYFKNPELMEADAMARRPKMGEIYAE 181 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y K +DF+DL++ TN+LL + + K + +IL+DE QDT+ Q+ ++ Sbjct: 182 YVNRCFKAGAMDFDDLLLRTNELLTRFPA---VLAKYQDKFRYILVDEYQDTNHSQYLIV 238 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 R+L + F + + VGD+ QSIY+F GA +L ++ Sbjct: 239 RALADRF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYDN--------VK 280 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 + L ++RST +I+ + V + + V++ + Sbjct: 281 LYRLEQNYRSTKNIVGAANSVIDHNQTKLDKVVWTAN---------DDGPKVKVNRSLTD 331 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 + R +A TI + +Q D Sbjct: 332 GDEG--------------------------RFVASTI---------WEEKMNNQLQNSDF 356 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 VL R + I R I IKD+ A R +L+ D+ + Sbjct: 357 AVLYRTNAQSRAIEDALR----KRDIPYRIYGGLSFYQRKEIKDVTAYLRLVLNTSDEEA 412 Query: 437 FVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-------ISKFQHVIKYI 488 ++ P + I ++ +T++E +++ + +K + + I Sbjct: 413 LKRVINYPARGIGQTTIDRLIVAANATGKTIFEVLKEIDSIKININGGTRNKLKDFVTLI 472 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSY- 544 + Q + D I + ++F E ++ ++E LN + Sbjct: 473 ESYQVMNQTANAFDLAEHITKSSGLIREFNKDGTPEGVLRLENVEELLNGIKDFVEGQIE 532 Query: 545 --SSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 S L LE + N V +MT+H AKGLE VF+V +F Sbjct: 533 VADSTGNLAEFLEDVALATDLDGDKGDPNHVALMTIHLAKGLEFNHVFIVGLEEDLFPS- 591 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + +S EE RL YV +TRA Q Sbjct: 592 ---------------------------------AMSMNTRSELEEERRLFYVALTRAEKQ 618 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVY 686 + + K + Sbjct: 619 AYLTYALSRYRWGKLIDSEPSRFIE 643 >gi|319938934|ref|ZP_08013298.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV] gi|319811984|gb|EFW08250.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV] Length = 760 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 89/492 (18%), Positives = 166/492 (33%), Gaps = 88/492 (17%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L K + Q +I +DE QD Sbjct: 166 EIVAKCYEMYQKELRQSEAMDFDDLIMLTLRLFDKNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL + V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANDVIKNNHNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + D + A +A TI + Sbjct: 306 --LW-------TQNADGEDIVYYRANDEQDE-------ALFVAKTIDEL---------SS 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +D VL R + I I I+D+++ Sbjct: 341 TSDYVYRDFAVLYRTNAQSRNIEEAL----LKVNIPYTMVGGTKFYSRKEIRDVISYLNL 396 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481 I + D++SF ++ P + KI + ++ + + Sbjct: 397 IANTSDNISFERVVNEPKRGVGPGTVEKIRNFAASQEMSLLDASSQIMLSPVKGKAAQAV 456 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I L + + L+L +Q ++ E I+ ++EFL+ T Sbjct: 457 FDFANLILNLRERLDELTVTELVELLLEKTGYTEQLAAQATLESQARIENIEEFLSVTKN 516 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E+ L +++L T ++ V +MT+H AKGLE PVVF+ Sbjct: 517 FDENPENDTEETGLDRLSRFLNDLALIADTDDGDQESSE--VTLMTLHAAKGLEFPVVFI 574 Query: 591 VDTGSQVFSHKH 602 + VF Sbjct: 575 IGMEENVFPLSR 586 >gi|302544595|ref|ZP_07296937.1| ATP-dependent DNA helicase PcrA [Streptomyces hygroscopicus ATCC 53653] gi|302462213|gb|EFL25306.1| ATP-dependent DNA helicase PcrA [Streptomyces himastatinicus ATCC 53653] Length = 823 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 116/714 (16%), Positives = 222/714 (31%), Gaps = 133/714 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 130 AAGEMKERVEELVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 184 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+K + + K +LK +L + F+ T Sbjct: 185 RLMALVCRDLDLDPKK-FPPKSFSAKISNLKNEL------IDEETFAGQAADGFEKT--- 234 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+D+I+ T +LL+ + + H+++DE Q Sbjct: 235 ---LAEAYAMYQSRLREANALDFDDIIMTTVNLLQ---AFPDVAEHYRRRFRHVMVDEYQ 288 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L L VGD QSIY+F GA + +L+ + Sbjct: 289 DTNHAQYTLVRELVGTDTDEVAAGE----LCVVGDADQSIYAFRGATIRNILQFEEDYP- 343 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I L ++RST IL+ + V EN + + Sbjct: 344 -------DARTILLEQNYRSTQTILSAANAVIERNENRRPKN------------------ 378 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ + + + A+ +A I + Sbjct: 379 ---LW------TEAGTGATITGYVADTEHDE--------AQFVADEIDRLTDAG------ 415 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ V R + + + + + ++D++A R Sbjct: 416 ---DARAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 468 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482 + + ED + ++ P + I E T + +++ + Sbjct: 469 VLANPEDAVPLRRIMNVPKRGIGDRAEAMIDALASREKITFPQALRRVDEAYGMAARSAN 528 Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + EL I + + P +L + + + I+ L E + Sbjct: 529 AVKRFNTLMEELRTIVESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQELASV 588 Query: 536 TLRNEQ----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 L EQ + +L E + + L I + +MT+HTAKGLE PVVF Sbjct: 589 ALEFEQDRGEENPGTLAEFLEQVALVADSDQIPDEDEEGTGVITLMTLHTAKGLEFPVVF 648 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L VF H + EE R Sbjct: 649 LSGMEDGVFPHMRALG----------------------------------QTKELEEERR 674 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 L YVG+TRA ++L + + + S + + + + ++ Sbjct: 675 LAYVGITRARERLYLSRSTMRSAWGTPSYNPPSRFLEEIPDQYVQWRRTGPATP 728 >gi|327469639|gb|EGF15108.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK330] Length = 762 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 97/589 (16%), Positives = 187/589 (31%), Gaps = 119/589 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKANIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI ++ ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRNFAFNQEISLLDASTNILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L + + +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMILDLRERLDDFTVTELVEAVLEKTGYATVLAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 ++ + S L +L L + +EV +MT+H AKGLE PVVFLV Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLDYQGLARP 650 >gi|227530244|ref|ZP_03960293.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC 49540] gi|227349833|gb|EEJ40124.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC 49540] Length = 761 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 111/768 (14%), Positives = 218/768 (28%), Gaps = 142/768 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V N + ++ L S Sbjct: 34 GAGSGKTRVLTHRIAYLIEEKGVLPWNILAITFTNKAAREMQERVGKLLGESARDIWVST 93 Query: 66 FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110 F L L + T + L +++ + Sbjct: 94 FHALCVRILRRDIEKLGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNA 153 Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + ++ + Y+ + N LDF+DLI+ T +L +K Sbjct: 154 KNALQTPDDYSKEANSMFENMVARAYKLYQRELEANQSLDFDDLIMKTIELFEKD---QE 210 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q++++ L + + + L VGD QSIY Sbjct: 211 TLEFYQDKFHYIHVDEYQDTNDAQYKLVNMLAQGY----------KNLCVVGDADQSIYG 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA +L + + + L ++RST IL ++V + Sbjct: 261 WRGANMNNILNFEHDYPQ--------AHTVMLEQNYRSTQTILDAANEVIDNNVYRKKKK 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW Q S+ + + A+ Sbjct: 313 ---------------------LW-------TENGKGDQISYYRAQNEHDE-------AQF 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I +K + D +L R + +I + Sbjct: 338 IVSKIKE---------EREKNNYKYNDFAILYRTNAQSRMIEETF----LKSSVPYTMVG 384 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D I+D++A I++ +D +SF ++ +P + + ++ Sbjct: 385 GHKFYDRKEIRDILAYLTLIVNPQDSMSFERVVNTPKRGIGMTSVDHLREFANDNNWSLL 444 Query: 468 EY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 E + K + + L A+F + D IL + Sbjct: 445 EAAENVDIANNISTRTRVKIDEFGQLMRNLTKQAEFLNLTDLTEEILDKSGYNKALEQDK 504 Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQYPPTIKRAHSANHNE 571 E + LDEF + T ++ + +++L Sbjct: 505 SLESQARRENLDEFKSVTQEYDEQHKDEDDNNIQKITNFLADLALVSDQD--DVDEQAPA 562 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFLV +F Sbjct: 563 VTLMTLHAAKGLEFPVVFLVGMEEGIFPLSRAILEDDELEEERRL--------------- 607 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDS 688 YVG+TRA +L + +++ + + + Sbjct: 608 -------------------AYVGITRAKKKLYLTNAFSRLLYGRIQRNQPSRFVEEINPD 648 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 E + + +T + E + + + + Sbjct: 649 LLKFENDQPAERLGGQKLPFGGEAATATTYREQKQRRQYRSAGKRVKP 696 >gi|282877935|ref|ZP_06286744.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC 35310] gi|281299936|gb|EFA92296.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC 35310] Length = 810 Score = 290 bits (741), Expect = 1e-75, Method: Composition-based stats. Identities = 112/647 (17%), Positives = 198/647 (30%), Gaps = 122/647 (18%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y + +K +DF+DL++ T LLK+ + IR K + ++L+DE QDT+ Q Sbjct: 178 VYEAYVQRCRKANAMDFDDLLVLTYQLLKEHED---IRQKYCERFQYVLVDEYQDTNYAQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ LT++ R + VGD+ QSIY F GA +L ++I + Sbjct: 235 QCIVWLLTKE----------HRHICVVGDDAQSIYGFRGANIDNILDFQQIYE------- 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + +L ++RST I+ + + E I G +++ Sbjct: 278 -GSRLFKLQQNYRSTQRIVQAANSLIKHNE----------RQIPKDVFSENDEGEKIIFK 326 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 V S + A + I + D Sbjct: 327 PVYSDKE-------------------------EAFVVCKDIKRIARQD---------NAP 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + R I IKD++A R +++ + Sbjct: 353 YSDFAILYRTNAQSRSFEEEMR----KQNIPYRIYGGLSFYQRKEIKDIIAYFRLVVNPD 408 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-------FANCGISKFQHV 484 D+ +F ++ P I KI + R + ++ I + K Sbjct: 409 DEEAFKRIINYPTRGIGNVTIQKIADSARSHAVSFWQVISNPVQYLQGVNQGTLGKINRF 468 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 + I I A + I+ S E + ++E L + Sbjct: 469 KELIEGYILKASNTDVYQLGNEIMKTSGFIADIYSNSDPEGLARQENVEELLAGMQDFCE 528 Query: 542 N----SYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 + + L L++ + V +MTVH AKGLE P VF+V Sbjct: 529 SKKEEGRENEIYLTDYLQEVALLTDLDSDDGEGSRVSLMTVHAAKGLEFPTVFIVGLEEN 588 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F + EE RLLYV +T Sbjct: 589 IFPSP----------------------------------LSMGSMREMEEERRLLYVAIT 614 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH---NDERVKKIKLTNSINKDEWIAYE 713 RA I+ N K T + D + E +++ ++ + Sbjct: 615 RAEKHCIMTSAKNRWRFGKMEFDTPSRFIKDIDSRFIHIESEFEVEASDDSFHTPYSGSS 674 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 +S + + Q K + + + S Sbjct: 675 FSGDVYRRYSDRMQNSRPVASQFQADVKPKITAPQRPEQAVDPFSTS 721 >gi|309777085|ref|ZP_07672051.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium 3_1_53] gi|308915155|gb|EFP60929.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium 3_1_53] Length = 715 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 102/641 (15%), Positives = 202/641 (31%), Gaps = 121/641 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + YE+ K+ LDF+DL+I +LK + IR K + N++ +DE QD Sbjct: 167 QIKADVYEFYEKRLKEMYALDFDDLLIFAYRILKNNEE---IRAKWQRRFNYLHVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 +Q+ +I+ L ++ L VGD Q+IY++ GA+ ++ ++ Sbjct: 224 VDNLQYAIIKLLVKE----------GSYLCVVGDPDQTIYTWRGAQVDIIMNFEKDFP-- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST IL + + N Sbjct: 272 ------DSHTVVLNENYRSTQQILNGANALIKNNRNRIDKDLF----------------- 308 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + + +++ D+ +A I + Sbjct: 309 ----------TRVESDDKIIHFSAMDDANEPV--------WVASKIMTLH---------- 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +DI +L R + + D+ I D IKD ++ R Sbjct: 341 HDHVNYRDIAILYRSNFLSRGLEKAL----LDFHIPYRIYGGIRFYDRAEIKDALSYLRL 396 Query: 428 ILSQED---------DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG 477 + D +L+ ++ SP + I +H+ +Y+ + ++ Sbjct: 397 LA-PFDEQDHKALYKNLAVKRVINSPKRGIGAKTLETIELQAQHDDTNMYDILCEYEIGK 455 Query: 478 ISK---FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 Q + I E + S +L E ++ + E + Sbjct: 456 GKAKANIQAFVAMIEECRALVDTISIDQLLEKVLEDSGYLDMLREDKEIERLENIKELIG 515 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + L L++ + N + V++MT+H AKGLE VF+ Sbjct: 516 DISDYVEEHPEG--TLNEYLQEISLYSDKEEQENGDFVQLMTIHAAKGLEFDNVFVFSLC 573 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F ++ P EE RL YV Sbjct: 574 EGIFPNERSVGEGGQP--------------------------------ALEEERRLAYVA 601 Query: 655 MTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 TRA QL + +S ++ K+ R ++ D + + ++ I+ Sbjct: 602 FTRARKQLFLSDSYGYSYVLDKIKTTSRFIKELPEDCIEDVGAKPRNTFSSDIDTYSGSD 661 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + +E + ++K+ S +D Sbjct: 662 FLSMHSNDIVQHRPQETSGYAQQAQRKLSDIRISDSFDDAP 702 >gi|307691765|ref|ZP_07634002.1| ATP-dependent DNA helicase PcrA [Ruminococcaceae bacterium D16] Length = 821 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 123/795 (15%), Positives = 236/795 (29%), Gaps = 148/795 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E + + L P + + + + L A + + Sbjct: 122 AAGELKDRLSAMLGPEAEDVWASTFHSACVRILRRDIERLGFASSFTIYDTDDSLRVIKD 181 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L L K P ++ + + +++D+ + + + + Sbjct: 182 CLKELELDDKQFPPRS------------VLGYISRAKDQML-LAEDYAAQSEKSGDYRLN 228 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 +AK + Y+ + LDF+D+I++T LL++ + +R ++ ++LIDE QD Sbjct: 229 KIAK-VYTRYQHRLWEANALDFDDIILHTVRLLQQFEE---VRAYYQRKFRYVLIDEYQD 284 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ +Q+ + +L + VGD+ QSIY F GA + +L ++ + Sbjct: 285 TNNLQYLLASTLAGGYE----------NFCVVGDDDQSIYRFRGATIENILSFEKQYPR- 333 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL + V + +G Sbjct: 334 -------CRTIRLEENYRSTKHILEASNAVIRNNQGRKGK-------------------- 366 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 +LW ++ + + + A+ +A I + G Sbjct: 367 -ELW-------TKAGEGEKLQVYTAMNENDE-------AQYVANQILDDFGQGRA----- 406 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + + I D +KD+ A Sbjct: 407 -----WKDHAVLYRMNAQSNQLETAFK----RSGIPYRIIGGTRFFDRAEVKDMTAYLAV 457 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KF 481 + + EDDL ++ +P I + A K Sbjct: 458 LNNPEDDLRLQRIINNPPRGIGAKTIETAQAIAQREGASLYAVIDNARMYPELERSAAKL 517 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + EL + F+ ++ ++ E ++ + E L Sbjct: 518 AAFTNLMGELTGLLTTLPLDQFYEEMMIRTGYAAMLETKNTVEDRTRLENIRELLTSIRG 577 Query: 539 NEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 +N +L + E+ Y + + V +MT+H+AKGLE PVVF+V Sbjct: 578 YMENAGDEPTLAGFLDEIALYTDLDSHDP--DQDCVVMMTMHSAKGLEFPVVFVVGAEEG 635 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F I EE RL YV MT Sbjct: 636 IFPSSRIMGEP----------------------------------DEMEEERRLCYVAMT 661 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 RA ++L + +++ + + + D W T Sbjct: 662 RAKEKLYLTCAGQRMLFGRTSANRPSRFLEEIPPEHLERSGRNFLDR--GDSWGGMPSRT 719 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776 + + + P S G + +D Sbjct: 720 ------------SGYGGYAKPERSPYDQRPEPRAPQRRDYGGFSRA--MGTSAAPKGSAD 765 Query: 777 NQTFNRGLII-HKLL 790 F++G ++ HK Sbjct: 766 LSAFHKGDMVRHKAF 780 >gi|315156747|gb|EFU00764.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0043] Length = 791 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNTY-KMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTLEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|310287344|ref|YP_003938602.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17] gi|309251280|gb|ADO53028.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17] Length = 885 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 113/735 (15%), Positives = 218/735 (29%), Gaps = 124/735 (16%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P+ S + + +I L + Sbjct: 75 AAAEMRERLEGLIGPVAQRMWVSTFHSACVRILRRDGQSI-----GLASGFSIYDTADC- 128 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-- 124 L K + I + D K L Q++ + + + Sbjct: 129 ERLVKLIGADLNIDLKRYTPRAILSRISDYKNSLIGWQEQLKRYAPDYRPGQRGYQIGNF 188 Query: 125 -ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + A Y+ +DF+DLI T +LL+ + + + +IL+D Sbjct: 189 GDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQP---QVADYYRHKFRYILVD 245 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGK-------NTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+E+IR L G+ + P + VGD QSIY+F GA+ + Sbjct: 246 EYQDTNHAQYELIRELAGVDAAGQVVPDAPSAGRAGPAWITVVGDSDQSIYAFRGADIRN 305 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + ++ I L ++RST IL + V + + + Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIANNQGRKPKK-------- 349 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + A A IA I+ + Sbjct: 350 -------------LWTAL-------GIGDPIVGYAADN-------AEQEAAWIAGEIARV 382 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + D+ ++ R + + + + Sbjct: 383 RAEEGT---------PYSDMAIMYRANAQSRALEGAL----VHAGLPYQLVGGTRFYERR 429 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 +KD +A + I++ D+++ +L P I + T + + + Sbjct: 430 EVKDAIAYLQAIVNPADNVNMRRILNVPKRGLGPRAESIIVSYADAHATTFWDGIEHLDQ 489 Query: 477 GI-------SKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 + + L A P + +L ++ + Sbjct: 490 IDGVPTRTGKQLAAFRDLMRSLSAFAAEHDGKPSEVVGEVLSQSGLLEELQRSEDPQDAS 549 Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582 ++ L + + EQN+ +L + + + + +V +MT+HTAKG Sbjct: 550 RVENLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHTAKG 609 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H Sbjct: 610 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDAD 635 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YVG+TRA +L + + + + ++N+ + + K+ + Sbjct: 636 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLIDWKRRETGM 695 Query: 703 SINKDEWIAYEWSTH 717 + W + Sbjct: 696 EGMRSGWSRRGFDDE 710 >gi|239814543|ref|YP_002943453.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239801120|gb|ACS18187.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 809 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 208/694 (29%), Gaps = 138/694 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE ++ V+DF +L++ + +LL+ D +R + HILIDE QDT+ + Sbjct: 188 ELYQLYEEQCQREGVVDFGELMLRSYELLRDND---PVREHYQRRFRHILIDEFQDTNRL 244 Query: 192 QWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ I+ L+ G ++ AVGD+ QSIY+F GA + R R Sbjct: 245 QYAWIKMLSGSTAAGGQFVPGENNSVIAVGDDDQSIYAFRGARVGNMADFVREFDVR--- 301 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I+L ++RS ++IL +++ S + G + Sbjct: 302 -----HQIKLEQNYRSYSNILDSANELISHNKKRLGKNL--------------------- 335 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + D + S D A+ + + ++ Sbjct: 336 ------RTDQGPGEPVRVYESPTDLAE--------AQWMVEEMRQLVRDG---------- 371 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 K++ VL R + +I + + + IK +A R + + Sbjct: 372 FDRKEMAVLYRSNAQSRVIETAL----FNASVPYRVYGGLRFFERAEIKHALAYLRLLEN 427 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 ++DD SF+ ++ P + ++ R ++++ + S + I Sbjct: 428 KDDDTSFLRVVNFPPRGIGARTLEQLQDAARTAGRSLHDAVHAVGGKAGSNLTAFVAKID 487 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN--------- 539 L Q S + L+L + + + R G + I+ L+E +N Sbjct: 488 VLREQTQGASLREIIELVLDHSGLVEHYKADREGADRIENLEELVNAAESFVTQEGFGRD 547 Query: 540 -------------------------------EQNSYSSLQELISELEQYPPTI-KRAHSA 567 + + +L L + L A Sbjct: 548 AVALPIDELRQSPASQGLDPNRPVIDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQA 607 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + V++MTVH AKGLE VF+ +F H++ Sbjct: 608 GQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDF-------------------- 647 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687 + EE RL+YV +TRA +L + ++ + Sbjct: 648 --------------ESLEEERRLMYVAITRARKRLYLSHSQTRMLHGQTRYNVKSRFFEE 693 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 + K +++ D P Sbjct: 694 LPEGALKWLTPKNQGFTPSAFGYGGGYASTRGGGGSYSSGGGYGGSKDTFASPPVPPQKA 753 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781 + T L S + Sbjct: 754 APSHGLRSGMQVFHNKFGEGTVLSLEGSGDDARA 787 >gi|315146962|gb|EFT90978.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4244] Length = 791 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|313200171|ref|YP_004038829.1| uvrd/rep helicase [Methylovorus sp. MP688] gi|312439487|gb|ADQ83593.1| UvrD/REP helicase [Methylovorus sp. MP688] Length = 720 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 95/576 (16%), Positives = 194/576 (33%), Gaps = 112/576 (19%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K+ ++ + A + + Y+ ++ V+DF +L++ +LL Sbjct: 144 KQVMGYINSCKEEGLRANAVDAYDAHSQRMREIFEEYDRQCQREGVVDFAELLLRCYELL 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + A IR +IL+DE QDT+ +Q+ ++ L + +FAVG Sbjct: 204 SRD---ASIRQHYQSRFKYILVDEFQDTNRLQYLWLKLLAG----------ADNCVFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + ++ R +I++L ++RS +IL + + + Sbjct: 251 DDDQSIYAFRGARVGNMRDFEQDFNVR--------NIVKLEQNYRSHGNILDAANAIITH 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 N G + LW S + ++ + + Sbjct: 303 NRNRLGKN---------------------LW-------TSAGKGEPIRVYQAYNDIDE-- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I ++ T + +I +L R + ++ Sbjct: 333 -----ANFIVDEIKSLHSEGT----------ELSEIALLYRSNAQSRVLEHAL----FSA 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 + + IK +A R I + DD + + ++ P + ++ Sbjct: 374 GLPYRVYGGLRFFERAEIKHALAYLRLIANPNDDTALLRVINFPTRGIGARSLEQLQEAA 433 Query: 460 RHETETVYEYIQKFANCGIS--KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 R E ++++ G + + I ++ A + + + R + Sbjct: 434 RAEDCSLWQAAINKVGNGRPGKGVEGFVALIRQMAEEATGLTLPEMAEIATTLSGLRTHY 493 Query: 518 ISRF-GNEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRI 574 + G + I LDE ++ + N+ +L + ++ + +++ Sbjct: 494 QNEKEGEDRIANLDELISAAVTFVNNNEDAGTLTDFLTFASLEAGE--HQAEVGRDALQL 551 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MTVH AKGLE VF+ + H+ Sbjct: 552 MTVHAAKGLEFRTVFISGLEEGLCPHEQSL------------------------------ 581 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + + EE RL+YV +TRA +L + + Sbjct: 582 ----YETNGLEEERRLMYVAVTRARQRLYLSHAQSR 613 >gi|317508740|ref|ZP_07966393.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974] gi|316252988|gb|EFV12405.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974] Length = 804 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 119/791 (15%), Positives = 227/791 (28%), Gaps = 157/791 (19%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF--SLLSSFFL 74 + P ++ NK E + + + ++ + Sbjct: 59 ERQARPGEILAITFTNKAAGELKERVGALVGGRMWEMWVSTFHSSCARFLRAEASAEAGF 118 Query: 75 TQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT----- 128 + FT + ++ + + +L+ + + + ++ A Sbjct: 119 DRNFTIYDSDDSKRLLSMVAEELELDSNRFPPRMLAAKIGDLKNELITPEAALAGVEDPF 178 Query: 129 --LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L + Y+E +DF+DLI+ LL+ D + + H+L+DE Q Sbjct: 179 DLLLGQVYRRYQERLAAANAMDFDDLIMRAVQLLQTNDE---VAERWRARFRHVLVDEYQ 235 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ +IR L G + L VGD QSIY F GA + + +R Sbjct: 236 DTNHAQYVLIRELVG-AGAGTQVGAETSALTVVGDSDQSIYRFRGATIRNIEEFERDFPN 294 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + L ++RST +IL+ + V + E + Sbjct: 295 --------ARTVLLEQNYRSTQNILSAANAVIAHNEGRREKR------------------ 328 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ Q + + A IA I+ ++ Sbjct: 329 ---LW------TEAGDGRQIVGYVA--------DHEHDEAGFIATEIAELVRAG------ 365 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + DI V R + + + + D ++D++A R Sbjct: 366 ----AKHGDIAVFYRTNNASRVFEEAF----IRHAVPYRVVGGQRFYDRREVRDVIAYLR 417 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF---- 481 I + D +S ++ +P + +I + +T +E Q A I Sbjct: 418 VIANPSDAVSLTRIINTPRRGVGDKAQAQIASWAGSQGKTFWEGCQAAAEGAIPALAARS 477 Query: 482 ----QHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + + L A + + + R + ++ LDE Sbjct: 478 QRSVAEFVAMLAGLRDELSAGELTVGELVAQTVERSGYRATLADSTDPQDGARLENLDEL 537 Query: 533 LNFTLRNEQ--------------------------------NSYSSLQELISELEQ---- 556 ++ + + + + + +L LEQ Sbjct: 538 ISVAVEYGEMAAGQEGGAVADGLAGELRVALPPEEEGESGADGDAGVAKLRDFLEQVSLV 597 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + V +MT+HTAKGLE PVVF+ F H + Sbjct: 598 ADSDRLPEGGSESGVVTLMTLHTAKGLEFPVVFMTGLEEGQFPHLRSLGDPV-------- 649 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--SNTSNEK 674 E RL YVG+TRA +QL + + Sbjct: 650 --------------------------ELAEERRLAYVGITRAREQLYVSRSLTRTFRGSP 683 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 +N + + + R + T + + P R + Sbjct: 684 MTNPPSRFLIEIPPHLVSWRRGEPDQTWAGFTRSDFGSVSAPRAENAAPFRRPAAERGPR 743 Query: 735 DEQKIPKKLFS 745 + + F Sbjct: 744 PRPNLRHESFE 754 >gi|315172193|gb|EFU16210.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1346] Length = 791 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 214/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANVSGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|300783060|ref|YP_003763351.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] gi|299792574|gb|ADJ42949.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] Length = 1080 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 135/1031 (13%), Positives = 283/1031 (27%), Gaps = 152/1031 (14%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 ++ + + L + + + + + + + + Sbjct: 115 VAGEPTVLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQIAHRVVSTWDNELDTDRVP 174 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 +++ L +++++ E + ++ ++ R Sbjct: 175 PTVTADLLALAGELGEHLVSTEQLAEYTTWLCRVIENAPRAKGQRAALPQKLTEIMAAQH 234 Query: 127 LTLAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 LA L Y K+ LDF D + L + + +L+DE Sbjct: 235 FRLALLPLVDDYHRRKRNEGALDFADQMSLAAQLAGGYPS---VVRGERERYGAVLLDEY 291 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT Q ++R+L + P + AVGD Q+IY + GA + R Sbjct: 292 QDTGHAQRVLLRALFG------GVENPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFP 345 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + L SFR+ +IL + + + E + I Sbjct: 346 RFDGERLVPAHEFGLLTSFRNPPEILDLANAIAEPLRARGLGVERLRAREGAGPADIACA 405 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 L + ++ + W ++ + Sbjct: 406 ----LLPDIRAERAWVADALARRWYAHQEQTG---------------------------- 433 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + VLVR+R D I R + V L D + DL++ Sbjct: 434 ------KPPTAAVLVRRRADMAPIAAELRA----RGLPVEVVGLGGLLDEPEVADLVSTL 483 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485 + + + +L + S D+ + + E + + + +I Sbjct: 484 KVLADPLSGSAAARLLTGARWRLSAADVAALWRRAGELSSPEKPDTPELVVERVEQAGLI 543 Query: 486 KYIHE-----------------------LIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 I E + S + + + ++R G Sbjct: 544 DAIDEPGDPARYSDEGYKRIRRIGWELAALRRRLDQSLPELVADVERTMLLDVESLARPG 603 Query: 523 NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTV 577 + LD F E ++L + L + V+++TV Sbjct: 604 SAGRAHLDAFAEVVTDYAETAPTATLLSFVDYLNTAAHAEDGLTPGEVEVVPDRVQVLTV 663 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS-------LNDDPGIPIWIPQSKSRNN 630 H+AKGLE VV + VF + + + D +P Sbjct: 664 HSAKGLEWEVVAVPHLVHDVFPGRRRSSSWLRTATSLPAKLRGDAEDLPELRIAEGYDRK 723 Query: 631 IVSDLIKHLK----KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 V + ++ + + Q E RL YV +TR+ LI+ H + + + + Sbjct: 724 EVQEGLELHEAGFVEREQAEERRLCYVALTRSEHALIVSGHWWNESSSRVKGPSEFLTEI 783 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET----------------- 729 + ++ ++ S P++ Sbjct: 784 ADVVRETGAGQLAEWAPEPTEDDENPLVSDSRAARWPVDPLSDRRTGVQTGVELVSEALA 843 Query: 730 ------------------------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 +++ + K + P + +++ L Sbjct: 844 SSPDEEASEEDDDPDGWLTDTDVLLEEWARKDDHVKLVPLPSRLSVSQLVALADDAARLA 903 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + N RG H L+ F + + L A ++ Sbjct: 904 ADLRRPLPVEPNSFARRGTEFHGWLERRFAGDQ----------LIEIDDLPGAADFGEAP 953 Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK 884 + L+ + + S V+V + + + + GR+D + + + ++K Sbjct: 954 DADFEELQTEFEKSEWA--SRVPVAVEVTFSADVEGLTLRGRMDAVFADPEGGWTVVDWK 1011 Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLN- 941 T P E QL+ Y P + + YV + P + L+ Sbjct: 1012 TGAVPP---ESRIPALSVQLAAYRMAWAALKNVPVEQVRAAFHYVRANRTIR-PADLLDP 1067 Query: 942 KAFAEISTKIP 952 +A + IP Sbjct: 1068 EALRSLLRDIP 1078 >gi|218283946|ref|ZP_03489814.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989] gi|218215525|gb|EEC89063.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989] Length = 1036 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 143/891 (16%), Positives = 289/891 (32%), Gaps = 101/891 (11%) Query: 43 NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102 P + + F +L +K I + +K KE + Sbjct: 228 KPEDYEIKKEYLSKCLDTTSYSDFKSQFELYLKNTIGFKKTIDKVDYSKYQTSFKEHETR 287 Query: 103 SQDEFIKIRDRFNTYKMFK-STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 + + K L + +++ KKK V+DF D+ LL+ Sbjct: 288 IVENLFDEAFYLKDIQSHKNLVDTLFDLTNKVKLYFQLEKKKMEVIDFNDMEHFAYQLLQ 347 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 I+ ++ + IL+DE QDT+ +Q ++I S + +F VGD Sbjct: 348 DP----MIKEEMYNKYQMILVDEFQDTNELQEKIIASFCHE-----------NNVFRVGD 392 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 KQSIY F A PK + Q + + L ++RS A ++ + +S Sbjct: 393 IKQSIYGFRQANPKIM-------QAWMEKEDDNNTPLLLQENYRSNASVIQFNNDFYSKI 445 Query: 282 ENAQGLSEDSTTTIRHRSSRIG--QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 N + L E G + + D + N ++ Sbjct: 446 MNNELLGEQFEEIDIANVGTKGQMESPQYPVRFLYTEYKDEEGNKATI----------KK 495 Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 + IA I + K + VL R + + Sbjct: 496 NHNENRFDLIAQDIIEKHNAG----------MPYKSMCVLTRNHA----PQEKLKAVFEA 541 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 Y I + + AI+ +++ + + DD+S L SPLFN S I K C Sbjct: 542 YNIPAMITIDHGFFTNPAIQIVISTLKALEDLTDDISLCASLMSPLFNVSFSQIAKCCID 601 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + + ++Y I+ + +K EL + I + + Sbjct: 602 KEKGTSLYMSIKN---------EDFMKPFFELYTNKNK-TITQLLQYIYAYNNF---YYA 648 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIM 575 + + LD L + E + + + +L + + ++ + V++ Sbjct: 649 STTIQDKNNLDYLLELAGQFENQN--DIHSFVLQLSKDAMQDQTQEASLYGKEDDVVQVK 706 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGL+ PVV+++ Q H + + +L + K + L Sbjct: 707 TMHQSKGLQFPVVYILSQHEQRDKHGSS-CILLDSTLGLSLKGLSLDYKLKYNSIYHLAL 765 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + + E R+ YV TR +L+I D + + Sbjct: 766 QTKKELNDLAEEMRVFYVATTRPQKELVIV-----------------DTIESIEDFYSPL 808 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 L + W+ + ++ +++ + + + + ++ Sbjct: 809 NAYTLLEDESYTGWLLHTYANTSDSLVVFDKKSELYERPLKVRQNNTPYTLPTYSKASKA 868 Query: 756 ILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814 + + K K + + + LS N RG + H +++ ++ I SY T Sbjct: 869 FSSQTASGAKIKLDWKEVSLSKNMGTIRGTLFH---EIVAQCAYPYQEKEIISYATSYGY 925 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874 + + I L E+ + ++ M +K+ ++ G +D + Sbjct: 926 TLKDHD----IKQILALNEDSLYSSWMKEKHV----FEQSYIIEEKNQVVHGFMDLVIYK 977 Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 + + I ++KT + + + QL Y+K +K N + + Sbjct: 978 KDEVIIVDFKTDAT--DNEKKLIDLYAIQLQTYKKAMKKL-TNLPINTYIY 1025 >gi|153814085|ref|ZP_01966753.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756] gi|317499894|ref|ZP_07958130.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 8_1_57FAA] gi|331087883|ref|ZP_08336808.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848481|gb|EDK25399.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756] gi|316898611|gb|EFV20646.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 8_1_57FAA] gi|330409578|gb|EGG89019.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium 3_1_46FAA] Length = 750 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 111/728 (15%), Positives = 224/728 (30%), Gaps = 140/728 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ +L Sbjct: 27 GAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAEEMRQRVDSLVGIGAESIWVST 86 Query: 66 FSLLSSFFL-----------------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108 F + L T + ++ + + KE++ Sbjct: 87 FHSMCVRILRRYIDRLGYDNRFTIYDTDDQKTLMKEVCRKTDIDTKRFKERM--LLSVIS 144 Query: 109 KIRDRFNTYKMFKSTL--ASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++ + F+ + L + YE + N LDF+DL++ T LL+ + Sbjct: 145 SAKNEMILPEEFELNAGGDFVQLKIAKVYKEYEAQMRANNALDFDDLLVKTVQLLETQPD 204 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 +R + +I++DE QDT+ +Q+ ++ L + R L VGD+ QS Sbjct: 205 ---VRENYQERFRYIMVDEYQDTNTVQFRLVSLLAGKY----------RNLCVVGDDDQS 251 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F GA + +L ++ +I+L ++RS ++L V + V + + Sbjct: 252 IYKFRGANIRNILDFEKEF--------SDAKVIKLEQNYRSVGNVLEVANSVIRNNKGRK 303 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + LW ++ + + + Sbjct: 304 EKT---------------------LW-------TDNEKGEKIRLRQFDTAYDE------- 328 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A+ IA I + D VL R + L+ + I Sbjct: 329 AQFIAEDIKDETAQG----------ANYSDHAVLYRTNAQSRLLEEKFVAM----NIPYK 374 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464 IKD+++ + I + +DDL+ ++ P I +I Sbjct: 375 IVGGINFYSRREIKDVLSYLKTIDNGKDDLAVRRIINVPKRGIGLTTINRIQESAAARGI 434 Query: 465 TVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 Y+ + SK I ++ D T ++ + + Sbjct: 435 GFYDALSAPDLIPGIGRSASKLDSFAALIEYFKGRSEESGVTDLLTEVIEKTGYTESLEA 494 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHNE 571 E + +DE ++ E++ +L + E+ + + + + Sbjct: 495 DDPEELEARVQNIDELVSKAAVYEESCSDRGERPTLSGFLEEVALVADID--SVAEDRDY 552 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H+AKGLE P V+L +F M DDP + Sbjct: 553 VILMTLHSAKGLEFPHVYLAGMEDGLFPS-------YMSISGDDPEELEEERRLC----- 600 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 YVG+TRA ++L + + + + + Sbjct: 601 --------------------YVGVTRAEEKLTLTCARMRLVRGERQYNSMSRFIKEMPSA 640 Query: 692 DERVKKIK 699 K + Sbjct: 641 LIDTGKRE 648 >gi|225870395|ref|YP_002746342.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] gi|225699799|emb|CAW93615.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] Length = 763 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 125/780 (16%), Positives = 241/780 (30%), Gaps = 135/780 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--------- 56 G ++ L ++ + + V+ N + ++A L A Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERALALSPATKDTLIATF 87 Query: 57 ----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIR 111 + E + F Q+ ++ + + + D K+ ++ + Sbjct: 88 HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVKALNLDPKKWSERSILATISNAK 147 Query: 112 DRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + ++ + L Y+E +++ +DF+DLI+ T L + + Sbjct: 148 NDLLDERAYELGASDLYSQTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPD---V 204 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 Q +I +DE QDT+ Q++++ L F + + VGD QSIY + Sbjct: 205 LAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRF----------KNICVVGDADQSIYGW 254 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + +L ++ ++ L ++RST IL ++V + + Sbjct: 255 RGADMQNILDFEKDYP--------DARVVLLEENYRSTKKILQAANEVIQHNRHRRPKK- 305 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + +Q + D + A + Sbjct: 306 --------------------LW-------TQNADGEQIVYYRANDERDE-------AVFV 331 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A TISNM + KD VL R + I I Sbjct: 332 ASTISNM---------CLELGKSFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGG 378 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 I+D++A + + D+LSF ++ P + K+ + +++ E Sbjct: 379 TKFYSRKEIRDVIAYLTVVANPSDNLSFERIVNEPKRGVGPGTLDKLRQFAYGQGQSLLE 438 Query: 469 YIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 + + +L S +L + Sbjct: 439 AASSLEQSPLKGKAAQAMLALASLLSDLRADLDQLSITALAEALLEKTGYLDMLRVQNTL 498 Query: 524 E---VIDVLDEFLNFTLRNE------QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVR 573 E I+ ++EFL+ T + Q + + L L + +A EV Sbjct: 499 ESQARIENIEEFLSVTKSFDDLSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVT 558 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ VF Sbjct: 559 LMTLHAAKGLEFPVVFLIGMEEGVFP---------------------------------- 584 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + EE RL YVG+TRA + L + + + KS+ + + N Sbjct: 585 LARAAEDQDELEEERRLAYVGITRAEECLFLTNANTRTLFGKSSYNRPTRFLKEMSENLL 644 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + + + + + L ++ M + +P+ N Sbjct: 645 SFQGLARPAHASFGVTFSQQGQRQFGTGMSLSEAIQSRKSMAQPARAASTSTPLPFGPNA 704 >gi|154244732|ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154158817|gb|ABS66033.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1107 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 159/957 (16%), Positives = 313/957 (32%), Gaps = 85/957 (8%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L R + L E+ + L P + ++ A + Sbjct: 206 LSGRPDIDLVEAVADFRRWLSAQPLEPKTLELVGQLETLADHFAGSFATAPVFDTLWRLA 265 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + F + + +L + + Sbjct: 266 HPARLPCMRRYTFDLLTPRTKTAWDKAAGKDRGAELNAEAGRHFARVDHCYRVILGRVAT 325 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + A Y K+ VLDF+DL+ L++ D +R + Q +HI Sbjct: 326 ALVAKLSDELDEVLADYAAFKRAAAVLDFDDLLERARALVRGHDA---VRRALGQRYSHI 382 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFV--GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +DE QDT IQ E++ + D +++ LF VGD KQ+IY F GA+ Sbjct: 383 FVDEFQDTDPIQAEILFRIAADDSPPRWQDSRLRAGALFMVGDPKQAIYRFRGADVGSYA 442 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 + +R N I+++ +FRS IL+ +++ F+ P +AQ Sbjct: 443 EARSAIARRWPNN-----IVQITANFRSRPAILSHINRCFATPLSAQ------------- 484 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 Q G V+L + + + DS + A +A + +IG Sbjct: 485 ----NQPGYVELAPTLDPPDHDLPCAAKITIDLPPDSRAAQI-RDAEAEVVADLCARLIG 539 Query: 359 TDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 TI +G + I +L + + + L Sbjct: 540 NVTIRDEDGDLAPLTPGGIALLAPTGSELWRYERAFEA----RGLRIASQAGKGLFRRQE 595 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC------TQRHETETVYEYIQ 471 ++DL+AL R + D L+F +++ PL SE+++ I R E + Sbjct: 596 VQDLVALVRVLADGGDTLAFGALMRGPLVGLSEEELLDITAGLPPLADRPEAIPRFSLAT 655 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDV 528 + + V+ + +L A+ +P + R +R G+ Sbjct: 656 DADDVAHPVARRVLTILQDLRRRARATTPALLLAEAVERLAVRPILSAREGDRSARAAAN 715 Query: 529 LDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 ++ L ++ + + A+ + + I+T+H+AKGLE PV Sbjct: 716 VEALLERARPYGVKGMKRFARDVSRDWRGGAAYNEGRVDADGDAIEIITIHSAKGLEWPV 775 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V ++T + + S + P ++ + + ++ +S E Sbjct: 776 VIPINTATLLRSRE--------PFVHRADDDTLHWVIGDVVPPELRAALETDDESLTRER 827 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV TRA + LI+ + + + +W +V + ++T + Sbjct: 828 ERLWYVACTRARELLIVPELAQAEQK------SWARVVNLGHDALPELDISRMTPAP--- 878 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 S P E + ++E + P +D + + T+D Sbjct: 879 ----MPMSADPPNTQTAELFAAERATIEEAAVALTWVRPSDHDPDRLEAVEAITLDAGDA 934 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLP--------EHKRKNFITSYCTKNAKLWPAK 819 ++ + RGL++HKL++ + + + + +T Sbjct: 935 PEVDLPVG--AGRVRGLLLHKLMEEVLSGELVEEVGRFVSRARELLTELVLDPDDSEALP 992 Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI- 878 + + + R L+ P + E V + K ++GRID I+ + Sbjct: 993 DSDEIAATAWRTLQLPDIAAL-RDRLTPEWPVYALLEDSSKPRALAGRIDAIAYTGDRAE 1051 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + ++K+ + H QL Y + L+Y++ V + Sbjct: 1052 VVVDWKSDVDPSDADIRL---HAGQLEDYLRA-----TGAP-RGALVYMTPGLVRWV 1099 >gi|307289586|ref|ZP_07569530.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109] gi|306499400|gb|EFM68773.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109] gi|315164585|gb|EFU08602.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1302] Length = 791 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|255283739|ref|ZP_05348294.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469] gi|255265804|gb|EET59009.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469] Length = 594 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 104/637 (16%), Positives = 203/637 (31%), Gaps = 99/637 (15%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V N + ++ L Sbjct: 27 GAGSGKTRVLTHRVAYLIEEKGVKPWNILAITFTNKAAGEMRERVDNLAGPEAGSVWVST 86 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + + N + + + +K+ KK + +++R + + Sbjct: 87 FHSLCVRILRRFIDRLGYENNFTIYDTDDQKSLMKDICKKLNIDTKMLKERTILAAISSA 146 Query: 123 TLASLTL---------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +++ Y+E K+N LDF+DL++ T +L + Sbjct: 147 KNELISVEAFEKQNFGDFNRRRIAAAYTEYQEQLKRNNALDFDDLLMKTVELFQS---CE 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I++DE QDT+ Q+ +I L + R L VGD+ QSIY Sbjct: 204 DVLAYYQDRFRYIMVDEYQDTNTAQFRLISLLAAKY----------RNLCVVGDDDQSIY 253 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA + +L + + +I L ++RST IL + V + Sbjct: 254 KFRGANIRNILDFETVFD--------DAKVIRLEQNYRSTKHILEAANNVIKNNVGRKEK 305 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + A Sbjct: 306 TLWTENEEGSLIKAKQFPSAFD-----------------------------------EAE 330 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I+ + Q D VL R + L I Sbjct: 331 FVAENIAGQVRRGE---------AQYGDFAVLYRTNAQSRLFEEKF----LMANIPYKIV 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 IKDL+ + + + DDL+ ++ P + K+ + Sbjct: 378 GGVNFYARKEIKDLLCYLKTVDNARDDLAVRRIINVPRRGIGAATLTKVQSYAMDHEISF 437 Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 Y+ +++ A +SK Q + +I L A+F ++ I+ + ++ + Sbjct: 438 YQALEQAAEIPGLGRSVSKLQDFVTFIRTLRSQAEFLGVNELLGQIIESTGYVKELEAED 497 Query: 522 GNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 +E + +DE ++ + E++ SL + E+ + N + V +MT+ Sbjct: 498 TDEARARIENIDELISKVVTYEESTGEPSLSGFLEEVALVADID--SLDENESRVVLMTL 555 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 H+AKGLE P V+L +F + Sbjct: 556 HSAKGLEFPNVYLTGMEEGLFPSHVGFDEDPDALEEE 592 >gi|283457344|ref|YP_003361920.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133335|dbj|BAI64100.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 985 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 119/731 (16%), Positives = 223/731 (30%), Gaps = 148/731 (20%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + P + +S + + + A L+ + Sbjct: 199 AAAEMRERIEALVGPRAKHMWISTFHSFCVRVLRR-----EAAALGLKSTFTIYDSTDS- 252 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L S + + K + + + LK +L + R + ++ T Sbjct: 253 QRLLSLIIKELNLDTKKFTAKAVGNRISALKNELVSA----EAYASRVASDNPYEKT--- 305 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + + LDF+DLI T LLKK I ++ HIL+DE Q Sbjct: 306 ---IAQIYTVYTQRLRAANSLDFDDLIGRTVFLLKKFPE---IANYYRRKFRHILVDEYQ 359 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRT------LFAVGDEKQSIYSFHGAEPKRVLRE 240 DT+ Q++++R L L VGD QSIY+F GA+ + + Sbjct: 360 DTNHAQYQLVRELVGAHVKAPADRGPYPDAVPPAELTVVGDSDQSIYAFRGADIRNITDF 419 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ I L ++RST +IL+ + V + + Sbjct: 420 EKDYPN--------AHTILLEQNYRSTQNILSAANAVIERNPDRRPKK------------ 459 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW S + + + S AR I I + Sbjct: 460 ---------LW------TASGAGAKIIGYVA--------ESEHAEARFITREIDRLADE- 495 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 +Q D+ + R + + + + + IKD Sbjct: 496 --------HGVQPGDVAIFYRTNAQSRTLEDML----MRAGLPYRVVGGTRFYERKEIKD 543 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN---- 475 +A R + + +DD++ +L P + + + ++ A+ Sbjct: 544 ALAYLRALSNPDDDVNVRRILNEPKRGIGAKSESVVADYATAHRISFFAAARQAADVPGL 603 Query: 476 --CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 + K+ ++ + +L IA+ +L + + ++ L Sbjct: 604 GAAAVKKYAEFVRLMDDLAQIARTEPAATCLEAVLEQTGYLAALRASKDIQDESRVENLS 663 Query: 531 EFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH-------------------- 569 E L+ + E + + L++ + + + Sbjct: 664 ELLDAMVEFETENPGADLEQFLEHVALVADADSIPNRPASAEGESASAAQIAAEAAEAKA 723 Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 V +MT+HTAKGLE PVVFL +F H+ Sbjct: 724 QGMVTLMTLHTAKGLEFPVVFLTGMEHGLFPHQRALT----------------------- 760 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 + E RL YVG+TRA ++L + + + KS + + Sbjct: 761 -----------DEKEMSEERRLAYVGLTRAMERLYLTRSETRTMWGKSQFNPPSPFLEEI 809 Query: 689 FHNDERVKKIK 699 K+ Sbjct: 810 PEELIEWKRTA 820 >gi|229548667|ref|ZP_04437392.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200] gi|307269775|ref|ZP_07551105.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248] gi|312953106|ref|ZP_07771955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102] gi|229306183|gb|EEN72179.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200] gi|306513885|gb|EFM82487.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248] gi|310628940|gb|EFQ12223.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102] gi|315036100|gb|EFT48032.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0027] gi|315153983|gb|EFT97999.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0031] Length = 791 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|262172714|ref|ZP_06040392.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451] gi|261893790|gb|EEY39776.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451] Length = 723 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 116/690 (16%), Positives = 220/690 (31%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ T +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQANLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLIANRNDDTAFERVINTPPRGLGDKTLDTIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N ++ I+ L H + + + G Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLFEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|225848053|ref|YP_002728216.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644159|gb|ACN99209.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense Az-Fu1] Length = 700 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 126/712 (17%), Positives = 241/712 (33%), Gaps = 133/712 (18%) Query: 37 LSMETGNPTILKKAQTLQQASQTQC-IEERFSLLSSFFLTQKFTP---QKNIITQEINKK 92 L++ N + + +++A + F ++ FL + +N + + + Sbjct: 58 LAITFTNKAAEEMKERVEKALGERPQWVMTFHSFAAKFLRFEAEKVGYDRNFVIYDEDDS 117 Query: 93 SPDLKEKLKKS--------QDEFIKIRDRFNTYKMFKSTLASLTL----AKYLNAHYEEA 140 +K+ LK D+ + + L L+ + + YEE Sbjct: 118 KKLIKKVLKDLNLNEELIKPDKVKDYISKIKQEDNPEEYLDLLSFSVPHIRNIYEKYEED 177 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 K + DF+DL++ + +LK I + + ++IL+DE QDT+ +Q ++++ L Sbjct: 178 LKNSNAFDFDDLLVKSVKILKNNPE---ILQRWQNKFDYILVDEYQDTNKVQHQLLKLLV 234 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 S T+ VGD Q IY++ GA P+ +L ++ II+L Sbjct: 235 G----------SRNTITVVGDPAQCIYTWRGAHPENILDFEKDFP--------GTKIIKL 276 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST IL + V S + + LW Sbjct: 277 ERNYRSTKKILDAANAVISKSKGKWKSKL------------------LTLW-------TE 311 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + ++ + + + A IA I + KD +LV Sbjct: 312 KEEGEEIRLVALSNEKEE-------ASFIARKIKEL-----------SSATDYKDFAILV 353 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R +T I + +KD+++ R L+ +D SF Sbjct: 354 R----MSFLTRNLEEAMMLNSIPYQIVGGLKFYERAEVKDILSYLRLALNPKDYASFERS 409 Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF--- 497 L +P E + I + + + E ++K K + IK +L+ Sbjct: 410 LTTPPRGIGEKGLEVIKS--NFVDNWIEALKKSLPHFNQKVKSSIKEYLDLMDYVIENAN 467 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISEL 554 +P I K + + + D ++E + E++ + L L Sbjct: 468 LNPSKVVKHIFEKIKYEEYLQKEYSKDWEDRVANINELIVALEEIEKSG----KTLTEFL 523 Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 E+ + + + + N+V+IMTVH AKGLE VF+ +F Sbjct: 524 EESSLSQAQDNLEDTNKVKIMTVHAAKGLEFNTVFVAGLEDGIFPSGRSFDDPT------ 577 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 EE RL YV +TRA ++L + K Sbjct: 578 ----------------------------QLEEERRLFYVAITRAKERLFLTYAK---ERK 606 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++ + + + K + T+ + A ++ T+ P + +E Sbjct: 607 SFGNKSVPTKLSQFLKDIKEHVKSQSTSKSASPQHTAVKYKTNKPSDGEIEA 658 >gi|171464032|ref|YP_001798145.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193570|gb|ACB44531.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 788 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 114/723 (15%), Positives = 233/723 (32%), Gaps = 132/723 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W + QVS I ++ + + + Sbjct: 36 GAGGGKTRVLTTRIAWLIQTGQVSPIGVLAVTFTNKAAKEMMLRLSAMLPINTRGMWIGT 95 Query: 66 FSLLSSFFL----TQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 F L + L + P + TQ+ L + LK +++ + ++ Sbjct: 96 FHGLCNRLLRAHHKEAGLPSTFQILDTQDQLSAIKRLLKGLKVDDEKYPAKQLQYFIAHA 155 Query: 120 FKSTLASLTL---------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 + + L L A Y+E ++ V+DF +L++ + +LLK + IR Sbjct: 156 KERGQRAKDLSVGDDFQAKMAQLYAAYDEQCQREGVVDFAELLLRSYELLKHSEA---IR 212 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSF 229 + HILIDE QDT+ +Q+ ++ L+ N ++FAVGD+ QSIY+F Sbjct: 213 THYQERFRHILIDEFQDTNALQYAWLKLLSGHDASSINVSGMGSSSVFAVGDDDQSIYAF 272 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + ++ +++L ++RS IL + + + G + Sbjct: 273 RGADVENMRLYEKQYHPL---------MVKLEQNYRSHGHILDTANHLIANNSERLGKNL 323 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + D+ + + D A + Sbjct: 324 ---------------------------RTDADHGEPVRIYEAPSDHAE--------AAWL 348 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I ++ + I+ ++ +L R + +I I Sbjct: 349 VDEIKALVNSG----------IKRTEVALLYRSNAQSRIIEHAL----FSAGIPYRVYGG 394 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IK +A R + + DD SF ++ P I + R + ++Y Sbjct: 395 LRFFERAEIKHALAYSRLLENPNDDTSFSRVVNFPTRGIGARSIEVLQDAARAQQCSLYL 454 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVID 527 + ++ + + + + + ++ Q ++ R G + ++ Sbjct: 455 AASTLEGKAGAALGGFVRLVDHMREATRHNTLPETVEFVIQHSGLIQHYLSEREGQDRVE 514 Query: 528 VLDEFLNFTLRNEQNSYSSLQE------------------LISELEQYPPTI-KRAHSAN 568 L E +N L + L A Sbjct: 515 NLQELINAATAFIAEEGYGQDAAAAMLSGENAPGVAEVSPLAAFLSHASLEAGDNQAQAG 574 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V++MTVH+AKGLE VF+ +F H++ Sbjct: 575 QDAVQLMTVHSAKGLEFTSVFITGLEEGLFPHENSVN----------------------- 611 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 +++ EE RL+YV +TRA ++L + + + + + Sbjct: 612 -----------EQNGLEEERRLMYVAITRAKERLYLSHTQSRMLHGQVRYNMPSRFLEEL 660 Query: 689 FHN 691 + Sbjct: 661 PSD 663 >gi|209694270|ref|YP_002262198.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238] gi|208008221|emb|CAQ78366.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238] Length = 1208 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 138/890 (15%), Positives = 281/890 (31%), Gaps = 145/890 (16%) Query: 113 RFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + L+LA ++AK++ L F+DL+ K +A + Sbjct: 321 DDFLAQPLEIKQPLLSLAIHKCRETLQQAKEQKNWLSFDDLLTQ-LSAATKNQENALLLE 379 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 KI ++ LIDE QDT +Q+ + ++ +D S LF +GD KQ+IY+F G Sbjct: 380 KIREQYPIALIDEFQDTDPLQYSIFNTIYQD--------QSQCGLFMIGDPKQAIYAFRG 431 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED- 290 A+ ++ +R T L ++RSTAD+++ V+++F + +D Sbjct: 432 ADIFTYIQARRQVADHYT----------LDTNWRSTADMVSSVNRIFEHGKQPFLYDDDI 481 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF---DSLPQESSASILAR 347 +++ Q D+Q P W + + + + ++A Sbjct: 482 PFYPVKYNPINAEQKSW---------SLDNQTQPAMTFWLQESKDGNPINKGNYQRVMAE 532 Query: 348 RIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A I ++ G+ + + KK I+A +I VLVR K+ L+ L Sbjct: 533 STAAQIQTILTGSQQGSAHLQNGEKKEAIKAGNIAVLVRTGKEGKLVRE---ALSKQGIA 589 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 SV ++R + KD++ L + ++ D + L S LF ++ D + + + Sbjct: 590 SVYLSNRDSVFSSPLAKDILRLLQAAMTPTDARAVRSALASSLFAYTADQLHQFNVDEMQ 649 Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 ++ + I+ + ++ ++ G Sbjct: 650 ------------------WELAVNEFRTYRKHWLQRGIMPMLHQIITQQGISERLLAENG 691 Query: 523 NEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIM 575 E + E L T + + Y L+ L + + + N V+I+ Sbjct: 692 GERHLTDLLHIGELLQQTSQTLDSDYGLLRWLSDAISEPNGDAEEQTVRLESERNLVQIV 751 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE +VFL S K + + + Sbjct: 752 TIHKSKGLEYDLVFLPFVCSYRAVDKKGEVSFYDEDNRYSVLDLLKE----------DES 801 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 ++ +K E RL+YV +TRA I KK + + Sbjct: 802 VEKAEKERLAEDLRLIYVALTRAVYACYIGMAPIGKGTSKKPPTGVHLSGLGYLIQQADE 861 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLERE--------ETIKQLMDEQKIPKKLFSP 746 +L + K P+ + + + Sbjct: 862 CDIAELQACLEKLIAGNSPMVIQSPQTLSDVLYKETEDNLFALTANKLSKPVKSNWWMTS 921 Query: 747 IKNDINEPYILNPSTID---------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 + + N S+++ ++ + + G +H L + Sbjct: 922 YSGLVKQGNHHNDSSLELINLDVDSAEDKDDKELDLEPERTIFTFPRGARAGTFLHSLFE 981 Query: 792 VIFTLPE---HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------MMTTAMS 842 + + I K + + + + R+L+ P + T Sbjct: 982 EVEFTQPINSEENTQIIIKLLEKE--NYDVEWLDVVQSMMQRVLDCPLDGHDLRLATKGP 1039 Query: 843 CDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQN 877 E+ I ++ + G ID + + Sbjct: 1040 TQRLVEMEFLLPITLLNSSLVNKTIAKHDEVSARAGELGFSTVSGMLKGFIDLVFEHEGK 1099 Query: 878 IFIFEYKTHHHVPQEI--------EHIPY-THIAQLSIYEKILKDSYPNK 918 ++ ++K++H E + + Q +Y L ++ Sbjct: 1100 YYVLDWKSNHLGDSPECYGGDALIEAMRDHRYDFQYQLYALALHRFLKSR 1149 >gi|225868652|ref|YP_002744600.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225701928|emb|CAW99448.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 763 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 124/780 (15%), Positives = 241/780 (30%), Gaps = 135/780 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--------- 56 G ++ L ++ + + V+ N + ++A L A Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERALALSPATKDTLIATF 87 Query: 57 ----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIR 111 + E + F Q+ ++ + + + D K+ ++ + Sbjct: 88 HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVKALNLDPKKWSERSILATISNAK 147 Query: 112 DRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + ++ + L Y+E +++ +DF+DLI+ T L + + Sbjct: 148 NDLLDERAYELGASDLYSQTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPD---V 204 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 Q +I +DE QDT+ Q++++ L F + + VGD QSIY + Sbjct: 205 LAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRF----------KNICVVGDADQSIYGW 254 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + +L ++ ++ L ++RST IL ++V + + Sbjct: 255 RGADMQNILDFEKDYP--------DAKVVLLEENYRSTKKILQAANEVIQHNRHRRPKK- 305 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + +Q + D + A + Sbjct: 306 --------------------LW-------TQNADGEQIVYYRANDERDE-------AVFV 331 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A TISNM + KD VL R + I I Sbjct: 332 ASTISNM---------CLELGKSFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGG 378 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 I+D++A + + D+LSF ++ P + K+ + +++ E Sbjct: 379 TKFYSRKEIRDVIAYLTVVANPSDNLSFERIVNEPKRGVGPGTLDKLRQFAYGQGQSLLE 438 Query: 469 YIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 + + +L S +L + Sbjct: 439 AASSLEQSPLKGKAAQAMLALASLLSDLRADLDQLSITALAEALLEKTGYLDMLRVQNTL 498 Query: 524 E---VIDVLDEFLNFTLRNE------QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVR 573 E I+ ++EFL+ T + Q + + L L + +A EV Sbjct: 499 ESQARIENIEEFLSVTKSFDDLSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVT 558 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ VF Sbjct: 559 LMTLHAAKGLEFPVVFLIGMEEGVFP---------------------------------- 584 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + EE RL YVG+TRA + L + + + KS+ + + + Sbjct: 585 LARAAEDQDELEEERRLAYVGITRAEECLFLTNANTRTLFGKSSYNRPTRFLKEMSEDLL 644 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + + + + + L ++ M + +P+ N Sbjct: 645 SFQGLARPAHASFGVTFSQQGQRQFGTGMSLSEAIQSRKSMAQPARAASTSTPLPFGPNA 704 >gi|26554344|ref|NP_758278.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2] gi|26454354|dbj|BAC44682.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2] Length = 738 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 102/555 (18%), Positives = 191/555 (34%), Gaps = 120/555 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y + +LDF+DLI +L+ IR K ++IL+DE QD Sbjct: 180 DIFAAVYEGYINFLRDGNLLDFDDLIKYARRVLE----IEEIRTKWQNRFDYILVDEFQD 235 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++I+ L+++F + +FAVGD Q IYS+ GA+ K+ Sbjct: 236 TNYDQYQIIKLLSKNF----------KNIFAVGDPDQMIYSWRGAQENIFEVFKKDFSDS 285 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL + + + +N + Sbjct: 286 L--------TIVLEKNYRSTKNILNIANSLIQKNKNRIKKNLY----------------- 320 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + D + + + I +++ + Sbjct: 321 -----------TDSSTESEIIYFEADDQNLES-------KFVCTRIKDLVDS-------- 354 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KDI +L R + I ++Y+I F +KD++A + Sbjct: 355 -KKYNYKDIAILYRANYLSRNIEEFL----SNYRIPYRIFGGFKFYQRKEVKDIIAYMKL 409 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ------KFANCGISK 480 I++ D++S + +P SE FKI + + + + Sbjct: 410 IVN-SDEVSLTRIYNTPRRQISEATYFKIKNYAVLNNISTFAAFKFVDEIEGIQTRTKNA 468 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540 + + E+ ++ S + I+ K + + + E N + E Sbjct: 469 VKAFYDSMIEIREK-KYGSISEMIDDIVEKTKYYEMLKEDGEEHRTENIIELKNASKNFE 527 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 QN+ S L++ N + V +MTVH +KGLE +VF++ Sbjct: 528 QNNPGSNINF--YLQELALLTSNDEEENQKNKQDSVSLMTVHASKGLEFKIVFIIQFNEN 585 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F I+ L++ +E R+ YV +T Sbjct: 586 IFPS-----------------------------------IRSLEEGNLDEERRIAYVAIT 610 Query: 657 RASDQLIICKHSNTS 671 RA + L I + TS Sbjct: 611 RAKENLYISCCNGTS 625 >gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL B-59395] gi|326197465|gb|EGD54654.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL B-59395] Length = 834 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 106/662 (16%), Positives = 194/662 (29%), Gaps = 151/662 (22%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 ++ ++E D + T + + A Y+ DF+DLI T Sbjct: 160 QISNFKNELKDPDDAAAEAEADGQTDLAAGTIAQIYAEYQRRLAAANAFDFDDLIGETVS 219 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 LL++ + + H+LIDE QDT+ Q+ ++R L D S L Sbjct: 220 LLQRHP---NVAEYYRRRFRHVLIDEYQDTNHAQYVLVRELVGDETSQSGVDPSE--LCV 274 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD QSIY+F GA + + +R I L ++RST IL+ + V Sbjct: 275 VGDADQSIYAFRGATIRNIEEFERDYPN--------AETILLEQNYRSTQTILSAANAVI 326 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 S N + LW DS + + D Sbjct: 327 SRNANRREKK---------------------LW------TDSGDGDLIVGYVADSDRDE- 358 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 A IA I ++ +S G D+ V R + + + Sbjct: 359 -------AAFIAKEIEELVD----YSIGGSASHTYADLAVFYRTNTGSRSLEEVF----V 403 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-C 457 + I + ++D++A R + + +D +S +L +P + + Sbjct: 404 RHGIPYKVVGGTKFYERKEVRDIVAYLRVVANPDDSVSLRRILNTPRRGIGDRAEACVAV 463 Query: 458 TQRHETETVYEYIQKFANCGISKFQH--------VIKYIHELIHI--------------- 494 + + Y+ + + + + I L Sbjct: 464 HAENLGISFYQALVEATENRVPLLNTRAVKQITLFVDLIEGLRSDFLMAFGAVGGESVDD 523 Query: 495 ------AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN--- 542 + + I+ R + + + +D L+E + Sbjct: 524 AVADATTEGADVGELVDAIVDRSGYRAELEASNDPQDAARMDNLNELIAVARDFSVEAAQ 583 Query: 543 ------------------------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 SL + ++ + V +MT+H Sbjct: 584 RDDDDLDDADEATDDAEVVGDGEPEPGSLAAFLEKVALVADADQV-PDEGEGVVTMMTLH 642 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 TAKGLE PVVF+ F H Sbjct: 643 TAKGLEFPVVFVTGWEDGHFPHMRALGDP------------------------------- 671 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E RL YVG+TRA +L + + + ++ + + + + ++ Sbjct: 672 ---AELSEERRLAYVGITRARQKLYLTRAMSRASWGQPVSNPESRFLQEVPQHLIDWRRT 728 Query: 699 KL 700 + Sbjct: 729 EP 730 >gi|116511959|ref|YP_809175.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris SK11] gi|116107613|gb|ABJ72753.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris SK11] Length = 758 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 212/700 (30%), Gaps = 145/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53 G ++ L ++ + + V+ N + ++A L Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALALTPRAQDTLIATF 87 Query: 54 -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEF 107 + + + + + K I+ + + K L + Sbjct: 88 HSMCVRILRRDADHIGYNRNFTIIDPGDQKSLMKRILKEANLDPKKWEPKGLLNTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D + + + Y++ +K +DF+DLI+ T L + Sbjct: 148 NDLLDETAYEAQITARHPYEMVVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPD-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 206 -VLAYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ K ++ L ++RST IL + V + Sbjct: 255 GWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTILDAANNVIKNNLKRRPK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 +LW + + + + A Sbjct: 307 ---------------------ELW-------TQNDEGDKIVYFRAGNEQEE-------AN 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +++ IS+ + + D VL R + I I Sbjct: 332 KVSEIISSGVRSGR----------SYADYAVLYRTNAQSRTIEDSF----VKSNIPYTMV 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----- 462 I+D++A + + D++SF ++ P + K+ Sbjct: 378 AGTKFYSRKEIRDVIAYLNVVANPADNMSFERIVNEPKRGVGPGALEKLRRFAESRNLYL 437 Query: 463 -TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + + ++ L ++ + + +L + Sbjct: 438 ADSSFDIMLSDIRGKVAGEIYNLAMAFDLLRTHSESSTITELVEEMLERTGYLKALQLMP 497 Query: 522 GNE---VIDVLDEFLNFTLRNEQNS-------------YSSLQELISELEQYPPTIKRAH 565 E I+ ++EFL+ T ++ S + L +L L + + Sbjct: 498 SIENQARIENIEEFLSVTKGFDEKSEVPLDEETGEPIIETGLDKLSRFLNEVSLLSETDA 557 Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 ++V +MT+H AKGLE P+VFL+ +F + Sbjct: 558 YEEESDQVTMMTLHAAKGLEFPIVFLIGMEENIFPLSRVN-------------------- 597 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL YVG+TRA + L + Sbjct: 598 --------------EDIDELEEERRLAYVGITRAEETLYL 623 >gi|312900317|ref|ZP_07759628.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470] gi|311292505|gb|EFQ71061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470] gi|315170713|gb|EFU14730.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1342] Length = 791 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|260424687|ref|ZP_05732964.2| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470] gi|260402848|gb|EEW96395.1| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470] Length = 746 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 95/548 (17%), Positives = 174/548 (31%), Gaps = 116/548 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y++ K+N LDF+DL+ T LL IR + ++ILIDE QDT+ Sbjct: 180 ADVYDLYDKYMKQNNALDFDDLLFATTKLLADE----TIRRRWQDHFHYILIDEYQDTNH 235 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ + + + + + AVGD QSIYS+ GA+ + ++ + Sbjct: 236 AQYLMAKYIAG----------KSQNICAVGDADQSIYSWRGADLRNIMDFREDYP----- 280 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 II+L ++RST IL + V L Sbjct: 281 ---SAQIIKLEQNYRSTQTILNAANAVIKNNVERLEKR---------------------L 316 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + D + A I +++ + Sbjct: 317 W-------TENNPGVHLQKYAASDEHNE-------ADFIV---------ESMMKEHGENH 353 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + + VL R + +I I+ D I+D++A + + + Sbjct: 354 VPYGKMAVLYRMNAQSRVIEESM----VKRGIAYTMVGGTRFYDRAEIRDMLAYLKLVAN 409 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHV 484 DD+S + ++ P + + K+ + + +K Q Sbjct: 410 FRDDISLMRIINVPRRGIGQTTMQKLSEFSKQGNMSMFEGIMSLEESDIPVPARTKLQKF 469 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I ++ + I+ + + + L E LN Q Sbjct: 470 SALIFSFLNASTEGDVFTLIQKIMTDTEYLSVLQQSSDPQAQSREENLGELLNVAKDFTQ 529 Query: 542 NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L LE+ ++V +MT+H+AKGLE P+V++ +F Sbjct: 530 EQPEG--GLPEFLEKVALVNDVDSFEEQDDKVTLMTIHSAKGLEFPIVYMAGMDEGIFPG 587 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + ++ EE RL YV +TRA + Sbjct: 588 ----------------------------------VRSLMDETALEEERRLCYVAITRAKE 613 Query: 661 QLIICKHS 668 +L + + Sbjct: 614 KLYLTTSA 621 >gi|307332408|ref|ZP_07611476.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu 4113] gi|306881942|gb|EFN13060.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu 4113] Length = 824 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 121/714 (16%), Positives = 227/714 (31%), Gaps = 133/714 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P VS + + + + + + Sbjct: 132 AAGEMKERVEELVGPRANAMWVSTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 186 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+S P K + + K +LK +L + F+ T Sbjct: 187 RLMSLVCRDLDLDP-KRFPPKSFSAKVSNLKNEL------IDEETFAGQATDGFEKT--- 236 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+D+I+ T +LL+ + + H+L+DE Q Sbjct: 237 ---LAEAYAMYQARLREANALDFDDIIMTTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQ 290 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L ++ L VGD QSIY+F GA + +L+ + Sbjct: 291 DTNHAQYTLVRELVG----TDTEETTAAELCVVGDADQSIYAFRGATIRNILQFEEDYPT 346 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I L ++RST IL+ + V EN + + Sbjct: 347 --------ARTILLEQNYRSTQTILSAANAVIERNENRRPKN------------------ 380 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ + + + + A+ +A I + Sbjct: 381 ---LW------TEAGAGTEITGYVADTEHDE--------AQFVADEIDRLTDAG------ 417 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ V R + + + + + ++D++A R Sbjct: 418 ---DAKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 470 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF--ANCGISKFQH 483 + + ED + +L P E I E T + +++ A ++ + Sbjct: 471 VLANPEDSVPLRRILNVPKRGIGERAEAMIDALALREKITFPQALRRVDDAYGMAARSAN 530 Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 +K + L+ P +L + + + I+ L E Sbjct: 531 AVKRFNTLMEELHTIVESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 590 Query: 536 TLRNEQ----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 L EQ + +L + + + L I + + +MT+HTAKGLE PVVF Sbjct: 591 ALEFEQDRGEENPGTLADFLEQVALVADSDQIPDEDTDGSGVITLMTLHTAKGLEFPVVF 650 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L VF H + EE R Sbjct: 651 LSGMEDGVFPHMRALG----------------------------------QTKELEEERR 676 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 L YVG+TRA ++L + + + S + + + R ++ Sbjct: 677 LAYVGITRARERLYLTRSTMRSAWGQPAYNPPSRFLEEIPDQYVRWRRTGPATP 730 >gi|227517687|ref|ZP_03947736.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104] gi|229546558|ref|ZP_04435283.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322] gi|293385045|ref|ZP_06630879.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712] gi|293389316|ref|ZP_06633777.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613] gi|307272535|ref|ZP_07553788.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855] gi|307274690|ref|ZP_07555862.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134] gi|307296389|ref|ZP_07576213.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411] gi|312904260|ref|ZP_07763422.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635] gi|312906034|ref|ZP_07765047.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512] gi|312909380|ref|ZP_07768236.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516] gi|227074842|gb|EEI12805.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104] gi|229308303|gb|EEN74290.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322] gi|291077723|gb|EFE15087.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712] gi|291081338|gb|EFE18301.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613] gi|306496044|gb|EFM65629.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411] gi|306508619|gb|EFM77717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134] gi|306510820|gb|EFM79837.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855] gi|310628029|gb|EFQ11312.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512] gi|310632356|gb|EFQ15639.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635] gi|311290404|gb|EFQ68960.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516] gi|315025780|gb|EFT37712.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2137] gi|315029104|gb|EFT41036.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4000] gi|315031452|gb|EFT43384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0017] gi|315145224|gb|EFT89240.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2141] gi|315151577|gb|EFT95593.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0012] gi|315157733|gb|EFU01750.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0312] gi|315161923|gb|EFU05940.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0645] gi|315575349|gb|EFU87540.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309B] gi|315578806|gb|EFU90997.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0630] gi|315581379|gb|EFU93570.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309A] Length = 791 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|327534311|gb|AEA93145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis OG1RF] Length = 791 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|15604312|ref|NP_220828.1| DNA helicase II [Rickettsia prowazekii str. Madrid E] gi|6226298|sp|Q9ZD95|UVRD_RICPR RecName: Full=Probable DNA helicase II homolog gi|3861004|emb|CAA14904.1| DNA HELICASE II (uvrD) [Rickettsia prowazekii] gi|292572062|gb|ADE29977.1| DNA helicase II [Rickettsia prowazekii Rp22] Length = 658 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 112/559 (20%), Positives = 183/559 (32%), Gaps = 117/559 (20%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L +AK + Y++ + VLDF DL++ N+L K + ++ +ILI Sbjct: 170 NLPLQKIAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPA---VLKYYQEKYRYILI 226 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT++ Q+ R L + R + VGD+ QSIY + GAE +LR ++ Sbjct: 227 DEYQDTNIAQYLWARMLASLY----------RNICCVGDDDQSIYGWRGAEVGNILRFEK 276 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 +II+L ++RST IL V + +N + Sbjct: 277 DF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHSKT-------------- 314 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 LW DS + + + D AR IA I ++ + Sbjct: 315 -------LW------TDSSSGEKIKIISCLSDKEE--------ARYIACEIDKLVKEER- 352 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 A +I +LVR T + I + + I+D++ Sbjct: 353 --------YNAGNIAILVRAGFQTRSFEEAF----INSAIPYKIIGGLRFYERMEIRDVL 400 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN------ 475 A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 401 AYIRISLNQNDNLALERIINVPKRAIGAASLNKIRSYALERNISNFAAIKEILEIGNIKA 460 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + ++ I +P + IL E I+ ++E Sbjct: 461 KSYESLKDLLTKIDNWYEQFIIDTPINVVKAILDDSGYLAMLKEEKTEEAFGRIENINEM 520 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 L + + + I + V IMT+H AKGLE VVFL Sbjct: 521 LRAIAEF-----NDIHDFIEYSSLVMENEVLETNYGG-SVTIMTLHAAKGLEFDVVFLPG 574 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + + EE R+ Y Sbjct: 575 WEEGVFPSQRSLD--------------------------------EDGEKGLEEERRIAY 602 Query: 653 VGMTRASDQLIICKHSNTS 671 VG+TRA L I + Sbjct: 603 VGITRAKKDLYITHAESRK 621 >gi|262404930|ref|ZP_06081482.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586] gi|262348769|gb|EEY97910.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586] Length = 723 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 116/690 (16%), Positives = 219/690 (31%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ T +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + + I L ++RST IL + + + G Sbjct: 258 GARIENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TDGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N ++ I+ L H + + + G Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P VF+V +F + Sbjct: 561 SAKGLEFPQVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|145589895|ref|YP_001156492.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048301|gb|ABP34928.1| ATP-dependent DNA helicase UvrD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 787 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 123/760 (16%), Positives = 241/760 (31%), Gaps = 136/760 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W + QVS I ++ + + + Sbjct: 36 GAGSGKTRVLTTRIAWLIQTGQVSPIGVLAVTFTNKAAKEMMVRLSAMLPINTRGMWIGT 95 Query: 66 FSLLSSFFL----TQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 F L + L + P + TQ+ L + LK +++ + ++ Sbjct: 96 FHGLCNRLLRAHHKEAGLPSTFQILDTQDQLSAIKRLLKGLKVDDEKYPPKQLQYFIAHA 155 Query: 120 FKSTLASLTLA---------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 + + LA L Y+E ++ V+DF +L++ + +LLK + IR Sbjct: 156 KERGQRAKDLAVGDDFQAKMAQLYGAYDEQCQREGVVDFAELLLRSYELLKHSE---PIR 212 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT-LFAVGDEKQSIYSF 229 + HILIDE QDT+ +Q+ ++ L+ N + +FAVGD+ QSIY+F Sbjct: 213 THYQERFRHILIDEFQDTNALQYAWLKLLSGHDASRVNVSGMGTSAVFAVGDDDQSIYAF 272 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + ++ ++L ++RS IL + + + G + Sbjct: 273 RGADVENMRLYEKQFHPLL---------VKLEQNYRSHGHILDTANHLIANNSERLGKNL 323 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 + D+ + + D A + Sbjct: 324 ---------------------------RTDAGHGEPVRIYDAPSDHAE--------AAWL 348 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I ++ + I+ +I +L R + +I I Sbjct: 349 VEEIKALVNSG----------IKRTEIALLYRSNAQSRIIEHNL----FSAAIPYRVYGG 394 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IK +A R + + DD SF ++ P I + R + ++Y Sbjct: 395 LRFFERAEIKHALAYLRLLENPNDDTSFSRVVNFPTRGIGARSIEALQDAARAQQCSLYS 454 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVID 527 + I+ + + + + + ++ Q ++ R G + ++ Sbjct: 455 AASSLEGKAGATLGGFIRLVDHMREATRHNTLPETVEFVIQHSGLIQHYLSEREGQDRVE 514 Query: 528 VLDEFLNFTLRNEQNSYSSLQE------------------LISELEQYPPTI-KRAHSAN 568 L E +N L + L A Sbjct: 515 NLQELINAATAFIAEEGYGQDAAAAMLPGENAPGVVEVSPLAAFLSHASLEAGDNQAQAG 574 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V++MTVH+AKGLE VF+ +F H++ Sbjct: 575 QDAVQLMTVHSAKGLEFTAVFITGLEEGLFPHENSIN----------------------- 611 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 ++ EE RL+YV +TRA ++L + + + + + Y+M Sbjct: 612 -----------EQDGLEEERRLMYVAITRAKERLYLSH----TQSRMLHGQVRYNMPSRF 656 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 LT W S ++ + E Sbjct: 657 LEELPSDSLKWLTPKAKDARWGGNSRSGSTWQDGYTRQRE 696 >gi|184200505|ref|YP_001854712.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201] gi|183580735|dbj|BAG29206.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201] Length = 1145 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 139/1081 (12%), Positives = 274/1081 (25%), Gaps = 223/1081 (20%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R G+ + W L V + + ++ N + +AS+ Sbjct: 139 RLGIESDTVLLG-QAQAWQLASELVRGWDGPLPEAVPAVNTLTGGVIKLSSEASEHLVEA 197 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 R F + Q D+ L + + T Sbjct: 198 HRIREFVQRF---RLACQDVPPDGRKRTPGKDVVSALSRM-----------------EQT 237 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + K++ LD+ DL+ +++ + + +L+D Sbjct: 238 DVLAQLV----ERFHAVKRQESALDYGDLLSLAARIVRVDPHARTV---ERDRFKVVLLD 290 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDTS Q + L D + AVGD +QSIY F GA ++ Sbjct: 291 EFQDTSHAQLALFSGLYGD----------GHCVMAVGDPQQSIYGFRGASSGQLFSFVEN 340 Query: 244 NQKRATNAGQK-FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 +R + G + + L ++R++ +L V + V +R + Sbjct: 341 FPRRTADGGSEYAATSFLTTAWRNSLSVLDVANAV--------------AAPLRTAPAWS 386 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 TV++ + + + + + + AR A I Sbjct: 387 RSAATVEVPPLDPAPGAVRGRVRVSRYATDTEE----------ARATAQLIHEQRAAHEG 436 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + + VL R+R + L I L + D++ Sbjct: 437 QPLAEM-----PTMAVLCRRRAQFEPLRLELEAL----DIPYEVVGLGGLLHTPEVSDVV 487 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-- 480 A+ + + +L + D+ + E E +E + Sbjct: 488 AMLHVLTDPGRSDALARLLAGARWRLGARDLAALGDWAAELERRHESAARGEQDTRPDDV 547 Query: 481 -------------------------------FQHVIKYIHELIHIAQFC---------SP 500 ++ + L + Sbjct: 548 VMADAVDGSSLVEALETLPRDGWVSSRGRSISPEGMRRLRALREDVVALREVLGDELTTV 607 Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPP 559 +LG LD F + ++ + ++ LE Sbjct: 608 IHEVEAVLGLDIELAALPGEDPATARRNLDAFTDQAVQFSATTRTHDVAAFLAWLETASR 667 Query: 560 TIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIM 609 H+ V+++TVH +KGLE V + F + Sbjct: 668 EENGLDLPPAHTRHDAVQLLTVHASKGLEWDHVHVPGLNQGDFPSTNSSAWTGEAAKLPW 727 Query: 610 PSLNDDPGIPIWIPQSKSR---NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 P D +P W P+ + + + + E RL YV TRA L + Sbjct: 728 PLRGDASQLPEWSPRVDDVRELEASFGEFAEDVAEHDLGEERRLAYVAFTRAKTLLELSG 787 Query: 667 HSNTSNEKKSNQRTWY--------DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 KK + + + + F +L + D ++ W Sbjct: 788 SVYRGTGKKPKEVSPFLREARDMAESATPGFEAGPWADPGELEGNPQLDTRVSALWPYDP 847 Query: 719 PE--------------------------------------------------NTPLEREE 728 E + L E Sbjct: 848 LEGPVITRTSRDADGTLSETVLPPAHEGRRARAEAAAQAVRNGGFPHLADVPDEELAAGE 907 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------------KTNLESLLS 775 ++ + + L + + + PS + Sbjct: 908 AGARVRRWRHEAELLLARRSDPERPRTVHMPSHVSASALVSMDSDPEGFVSTLRRPMPRR 967 Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 G H ++ + L E + L+ P Sbjct: 968 PGSAARAGTAFHTWVENFYGDSA----------------LLDPDELPGADDHVDEDLDLP 1011 Query: 836 MMTTAMSCDSYSE---VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 + ++E +V + P + + GRID + + + ++KT E Sbjct: 1012 RLAETFRASPWAERQPYAVELPVETPVGSLTVRGRIDAVFRTADGWELVDWKTGRVPHGE 1071 Query: 893 IEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 QL++Y + P +S+ YV+ +V + I + Sbjct: 1072 DLRRKS---GQLALYRLAFARLHGIPLESVSAAFYYVASDRVVRPLDLADEQQLEGIVSS 1128 Query: 951 I 951 + Sbjct: 1129 L 1129 >gi|119899502|ref|YP_934715.1| DNA helicase II [Azoarcus sp. BH72] gi|119671915|emb|CAL95829.1| DNA helicase II [Azoarcus sp. BH72] Length = 739 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 115/757 (15%), Positives = 234/757 (30%), Gaps = 125/757 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W + Q S + + + + Sbjct: 28 GAGSGKTRVLTTRIAWLVQSGQASPAEILAVTFTNKAAKEMHARLAAMLPINTRSMWIGT 87 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + + + L + L ++ Q Sbjct: 88 FHGLCNRLLRAHHRDAGLPQLFQILDSGDQLAAIKRLLKTLNVDDEKFPPRELQHFINGQ 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 ++ ++ L YE ++ V+DF +L++ T +LL++ + IR Sbjct: 148 KEAGFRPHAVEAWDEFTRQRVQLYQEYEAQCQRESVVDFAELLLRTYELLERNE---PIR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + HIL+DE QDT+++Q+ ++ L ++ +LF VGD+ QSIY F Sbjct: 205 RHYQRRFRHILVDEFQDTNVLQYRWLKLLADE------GREGGASLFCVGDDDQSIYRFR 258 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GAE + +R + + ++I L ++RS +IL + + + G + Sbjct: 259 GAEVGNMRDFEREFRVQ--------NVIRLEQNYRSRGNILDAANAIIRNNSDRLGKN-- 308 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 LW D + ++ D+ AR + Sbjct: 309 -------------------LW------TDQGAGEPIRVFEAFSDADE--------ARWLV 335 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 + ++ + +I +L R + ++ + Sbjct: 336 DEVRGLVRDGALR----------SEIALLYRSNAQSRVLEHQL----FTAGVPYRVYGGL 381 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469 + IK +A R I + +DD +F ++ P + + R ++Y Sbjct: 382 RFFERQEIKHALAYLRLIANPDDDTAFARVVNFPTRGIGARSLEALQDAARTYNTSLYAT 441 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528 + + + ++ + +L + +L A R + S G E ++ Sbjct: 442 VPHLSGKAGTVLAQFVRLVEDLRRDTARLPLPELIDHVLDASGLRAHYKSEKEGQERLEN 501 Query: 529 LDEFLNFTLRNEQNSYSSLQ-------ELISELEQYPPTI-KRAHSANHNEVRIMTVHTA 580 LDE L + + + L L + V++MTVH+A Sbjct: 502 LDELLGAGSNFVAEAQADAEVLAGDHALLADFLAHASLEAGDHQADQGADAVQLMTVHSA 561 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE VVF+ +F H++ L+ Sbjct: 562 KGLEFNVVFVSGLEEGLFPHENS----------------------------------ILE 587 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 EE RL+YV +TRA ++L + + ++ + + + Sbjct: 588 AEGLEEERRLMYVAVTRARERLYLSFAQSRMLHGQTRYNLRSRFLEEIPAGLVKWLTPPN 647 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737 S+ P + + Sbjct: 648 PRSMAGGALAGMGGGYFKPGASVAPVAARQARGTSAH 684 >gi|42525604|ref|NP_970702.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405] gi|41815615|gb|AAS10583.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola ATCC 35405] Length = 1139 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 154/956 (16%), Positives = 292/956 (30%), Gaps = 114/956 (11%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 + + + S E + L N ++KEKLK ++ I I Sbjct: 225 EAISEFSTLPHFPESIKDEAFIKLLPIVDKISKTAKGRGNDAVKEIKEKLKIIYEKLICI 284 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +N + + L Y KK+ +L F D+ D+L +R Sbjct: 285 ---YNFDYSRDFLASFFDMLNELQKEYIYEKKQRGLLTFSDVSQLAVDVLINDID---LR 338 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL-----FAVGDEKQS 225 + + I+IDE QD + +Q +++ + E F + P L F VGDEKQS Sbjct: 339 NFYKKNADIIMIDEFQDNNSLQRDLLFLIAEKFERSEKFVPGPHELCPNKLFFVGDEKQS 398 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY+F GA+ + + ++ + L +++R+ ++ + + +FS + Sbjct: 399 IYAFRGADVSVFRKLADDISDK-----ERLAATRLLINYRTEPTLINLFNTIFS-----K 448 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT-----SYFDSLPQES 340 + + E + + + + DS S Sbjct: 449 VFYSEVNKPLEKNGFVPAYEAEYVPTETRAPVKGIEPKIEIMFFDKKRFNALEDSSRFLS 508 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 A +A I + +GK R D VL+R + R + Sbjct: 509 PVEAEAFYLAKRILELRNQGFKIRDGKSARACSWSDFAVLLRASTKQSTYERVFR----N 564 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED--DIFKIC 457 + I + L + I D+ A+ + I D ++ +L SP N +D + + Sbjct: 565 FGIPYRSVQQRGLFNDAPINDIYAMLKIIAYPSDKKTYAQVLHSPFVNIDDDAFAVLLLN 624 Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHE-LIHIAQFCSPHDFFTLILGAKKGRQQ 516 + ++ E + + + + +++ ++ ++ S + Sbjct: 625 FTKAFDISLAEKLNEKNKDAYLRACDLFARLNKNILTMSCAESVTYLWYEEAYRYFLLSN 684 Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRI 574 + ++ D L E N + L S +E ++ + V+ Sbjct: 685 EENHHYMDLYDYLFELACQADINGLTFSQFVDLLSSHIEDNERLDDMELPLDDQKDSVQF 744 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP-QSKSRNNIVS 633 +TVH +KGLE P+V + D G++ K + + P +K+ N I Sbjct: 745 LTVHKSKGLEFPIVIVPDCGNRGIPEKKEGLVFYNEDMGPVLYSPKAPGLPAKAGNLIFE 804 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN------------QRTW 681 L E RLLYV TRA LII N + S + Sbjct: 805 SLRDEANAKLVAETKRLLYVAATRAESYLIISGVYNHLQNEDSKDSKKDVTKDNDCSSSD 864 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK---------- 731 + + + K + E P ER++ Sbjct: 865 SRSLEEIKSMLKLSDKTISFFELLLPALPDKHEDIIFTEILPTERKKLFNNLKTQKHEKV 924 Query: 732 --------------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777 L +++ + N + L T + + Sbjct: 925 NFEKLFASSKVKEFNLAEKRITTATSLAHEVNKKSREGYLYSLTSEKDKLPDSFEDKDGQ 984 Query: 778 ---QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRL 831 G + H L++ K K E K + Sbjct: 985 KEFTAAELGTLTHSLIE--------------ARLLNKEFIYPKGHSEVERKKIYAWADNF 1030 Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891 + M A + + I+SG+ID + +++ +YKT Sbjct: 1031 FNSDMYVLAKEAEQLKS---EYGFLTDYEGQIVSGQIDLLFKKSGIVYVVDYKTD----- 1082 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYP----------NKS--LVCLLIYVSEPKVFII 935 P +H+ QL IY+K D +K + + Y+ + Sbjct: 1083 -EIENPDSHLTQLKIYKKAASDLAKTESENLKENTDKPIEVKTFIFYLKTGHCVEL 1137 >gi|240850877|ref|YP_002972277.1| DNA helicase II [Bartonella grahamii as4aup] gi|240268000|gb|ACS51588.1| DNA helicase II [Bartonella grahamii as4aup] Length = 779 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 108/550 (19%), Positives = 184/550 (33%), Gaps = 108/550 (19%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L Y+ K DF DL++++ + + I + + +IL+DE QDT Sbjct: 208 MGRELYHSYQNRLKDLNACDFGDLLLHSISIFQHNPD---ILREYHSQFRYILVDEYQDT 264 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + L VGD+ QSIY + GA+ + +LR ++ Sbjct: 265 NTAQYLWLRLLAQHP------QGQHVNLCCVGDDDQSIYGWRGAKVENILRFEKDFP--- 315 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + + E G S Sbjct: 316 -----SAKIIRLERNYRSTSHILKTASHLIAHNEERLGKVLFSAQI-------------- 356 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + ++ S +DS + AR I I T ++ Sbjct: 357 ------------KSEEEKVKIHSAWDSQEE-------ARAIGEEIEQAHQTGHALNH--- 394 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + +LVR L ++ + + I+D MA R + Sbjct: 395 -------MAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYLRVV 443 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481 + DDL+F ++ +P + + + R ++ + S Sbjct: 444 VQPADDLAFERVINTPKRGIGDATLRILYESARARAVPLFSAAADIIETDELKPKARSAL 503 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + +I+ ++ Q + +IL ++ E L+ EQ Sbjct: 504 RSLIENFRRWQNMLQDTPHKELAEIILDDSGYTTMWLEDRSPEAPTRLENLKEMIRSMEQ 563 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L S LE + ++ N + V IMT+H+AKGLE VFL +F H+ Sbjct: 564 -----FENLQSFLEHVALVMDAENNENTDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 618 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 +S EE RL YVG+TRA Sbjct: 619 RSLD--------------------------------EGGRSGLEEERRLAYVGLTRAKKH 646 Query: 662 LIICKHSNTS 671 L I SN Sbjct: 647 LHIWFVSNRR 656 >gi|332039917|gb|EGI76310.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624] Length = 1133 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 145/901 (16%), Positives = 297/901 (32%), Gaps = 73/901 (8%) Query: 43 NPTILKKAQTLQQAS-QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101 N T AQ ++QA Q ++R + L + + + ++ + Sbjct: 278 NKTPQTAAQAIEQAFTQQADADQRLAALRKAVFVAEADRLTQHLKK------YPAAQQAE 331 Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 ++ + + + + + LA+ L Y K++ +D D+ LL+ Sbjct: 332 AELQPLLQAQQQHEAWVHQQR---MIRLARILLEEYAALKRERGWVDMSDVERAALHLLE 388 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL---TEDFFVGKNTHSSPRTLFA 218 + ++SAW++ ++D H+LIDE QDT+ +QW+ + + G + LF Sbjct: 389 RSELSAWLQQRLDARTRHLLIDEFQDTNPLQWQALHAWLSSYAGVGGGASGAGGAPRLFI 448 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD KQSIY F AEP+ + Q + + + R+ +L V+ V Sbjct: 449 VGDPKQSIYRFRRAEPQIFRAAQSFVQALGGDL------LACDHTRRNAPAVLARVNAVL 502 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 ++ T S V + ++ + P+ Sbjct: 503 GEAQSQGEYEGFRAHTTE---STQAGQAWVLPPIERQARDKKEAATVWRDSLLAPRLTPE 559 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 ++ + R+ A I+ I + K+++VL RKR + L Sbjct: 560 DTLRARECRQAARWIAQRIEAG----------LPPKEVMVLARKRDRLVAMQAELLAL-- 607 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIF 454 + ++ L ++DL AL ++S DLS +L+SPL + + Sbjct: 608 --GVPATQPEQADLGAAPEVQDLTALLDVLVSPGHDLSLARVLRSPLLGPHLGLDDTALL 665 Query: 455 KICTQRHETETVY---EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 +I ++ + + A + + V + + PHD I Sbjct: 666 EIAARQRGGKQAWFDLLQTTPPAAWAHADLREVGPRLQRWQQWVRTLPPHDALDAIYADG 725 Query: 512 KGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567 ++ + V L L L+ + Y++ L+ L Sbjct: 726 DVVARYAAAAPPHLRARVQTHLQALLEAALQFDGGRYATPYALVRALRAGRLPAPAQPMP 785 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 VR++TVH AKGLE+ V ++DT + + + + P P +++ K Sbjct: 786 EGGAVRLLTVHGAKGLEAETVLILDTDTPPQRAQTMSVLLDWPGEASAPRSFVFLASEKE 845 Query: 628 R--NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + + + E +LYV +TRA QL+ + + W ++ Sbjct: 846 ERLPPSAREAHARERAARGREELNMLYVALTRARAQLVFSAVQ-PHQQNTEGKSWWQRLL 904 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 ++ + + + P + E + I ++ Sbjct: 905 HECQPWEPTPPQSPADGVARFEGMGRVSDMDGREAGAPTQHEPAVAAPAASSAIVLRVLP 964 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 I+ +L PS+ + G +H+LL+ + Sbjct: 965 DIRYQPVP--VLAPSSEEDAL------------AARIGSAMHRLLEWTALDTAEFSPAQL 1010 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865 + + + R++ + + S + + Sbjct: 1011 ERAGAEQG--LTPAQARQAADMARRIV-HGAGAWVWRGADVAWWSNEVPVTIEGQAR--- 1064 Query: 866 GRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 RID++ ++ +YK+ Q E +AQL Y ++ + + + L Sbjct: 1065 -RIDRLVRHRDGTWWVLDYKS-ASYAQAAEVTRAQMLAQLRAYGDAVRAACAGEPVRIAL 1122 Query: 925 I 925 + Sbjct: 1123 L 1123 >gi|302558895|ref|ZP_07311237.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000] gi|302476513|gb|EFL39606.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000] Length = 825 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 121/755 (16%), Positives = 231/755 (30%), Gaps = 133/755 (17%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 183 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D F+ T Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 233 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 234 ---LAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS----SPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DT+ Q+ ++R L + P L VGD QSIY+F GA + +L+ + Sbjct: 288 DTNHAQYSLVRELVGTVEHPVDVPPEAEVPPAELCVVGDADQSIYAFRGATIRNILQFEE 347 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + I L ++RST IL+ + V E+ + + Sbjct: 348 DYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN-------------- 385 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 LW + + + + + A+ +A I + Sbjct: 386 -------LW-------TNAGSGARITGYVADTEHDE-------AQFVADEIDRLTDAGE- 423 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 +A D+ V R + + + + + ++D++ Sbjct: 424 --------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVL 471 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKF 481 A R + + ED + +L P + I + E + + +++ Sbjct: 472 AYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALAQREKISFPQALKRVDEAYGMAA 531 Query: 482 Q------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 + + EL + + + P IL + + + I+ L E Sbjct: 532 RSSNAVKRFNTLMEELRTVVESGAGPATVLEAILERTGYLAELQASTDPQDETRIENLQE 591 Query: 532 FLNFTLRNEQNSYSS----LQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 L EQ L + + + L I + +MT+HTAKGLE Sbjct: 592 LAAVALEFEQERGEGESVALSDFLEQVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEF 651 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVVFL VF H + E Sbjct: 652 PVVFLTGMEDGVFPHMRALG----------------------------------QTKELE 677 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YVG+TRA ++L + + + S + + + + K+ + ++ Sbjct: 678 EERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPSRFLEEIPAAHLEWKRTGASGPVS 737 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 S + + + P Sbjct: 738 SGRASGVAASLSSSRSRSSAAGASGFATRRTAENP 772 >gi|328884521|emb|CCA57760.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae ATCC 10712] Length = 816 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 121/708 (17%), Positives = 218/708 (30%), Gaps = 132/708 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 132 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 186 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+S P+K + + K +LK +L + F+ T Sbjct: 187 RLMSLVCRDLDLDPKK-FPPKSFSAKISNLKNEL------IDEESFADQAVDGFEKT--- 236 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 237 ---LAEAYRMYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 290 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L + P L VGD QSIY+F GA + +L+ + Sbjct: 291 DTNHAQYTLVRELVGTGYEDLG----PAELCVVGDADQSIYAFRGATIRNILQFEEDYP- 345 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + I L ++RST IL+ + V E+ + + Sbjct: 346 -------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 380 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + Q + + A+ +A I + Sbjct: 381 ---LW-------TNAGAGSQITGYVADTEHDE-------AQFVADEIDRLTDAGE----- 418 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ V R + + + + + ++D++A R Sbjct: 419 ----AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 470 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482 + + ED++ +L P E I E T + +++ + Sbjct: 471 VLANPEDNVPLRRILNVPKRGIGERAEAMIDALSLREKITFPQALKRVDEAYGMAARSAN 530 Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + EL + + + P +L + + + I+ L E Sbjct: 531 AVKRFNALMDELRTVVESGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 590 Query: 536 TLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 L EQ L LE I + +MT+HTAKGLE PVVFL Sbjct: 591 ALEFEQERGEEPATLAEFLEKVALVADSDQIPDEDEEGRGVITLMTLHTAKGLEFPVVFL 650 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 VF H + EE RL Sbjct: 651 TGMEDGVFPHMRALG----------------------------------QAKELEEERRL 676 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 YVG+TRA ++L + + S S + + + + K+ Sbjct: 677 AYVGITRARERLYLTRSSMRSAWGQPSYNPASRFLEEIPPAYLEWKRT 724 >gi|325281708|ref|YP_004254250.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] gi|324313517|gb|ADY34070.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] Length = 756 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 99/582 (17%), Positives = 190/582 (32%), Gaps = 118/582 (20%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 + + T L + Y++ K++ +DF+DL++ TN L + I K Q+ N Sbjct: 163 LSEDTAGKRPLLGEIYKQYQQRCKQSDTMDFDDLLLQTNILFRDFPD---ILAKYQQKFN 219 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +IL+DE QDT+ Q+ +++ L++ + VGD+ QSIYSF GA + +L Sbjct: 220 YILVDEYQDTNYAQYLIVKKLSD----------RHHNICVVGDDAQSIYSFRGARIENIL 269 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 K + + +L ++RST I+ + V S + S Sbjct: 270 NFKNDYPEY--------KLYKLEQNYRSTTTIVDAANCVISKNKEQIPKKTFSQ------ 315 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 ++ + + + D ++ I + Sbjct: 316 ---------------------NEEGEKIKVLRALSDKEEGF--------QVTNEIFRL-- 344 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + D +L R + ++ R I I Sbjct: 345 -------ANYEQQEYSDFAILYRTNAQSRILEEALR----KRNIPYKIYGGQSFYQRKEI 393 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN-- 475 KDL+A R ++Q D+ +F ++ P + + KI + +++ + Sbjct: 394 KDLLAYFRLTVNQNDEEAFKRIINYPRRGIGDSTVDKIREIAGKYHVSLWTVLCNLDKVA 453 Query: 476 -----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VID 527 +SK Q I + +D +I + + E + Sbjct: 454 GAFNSGTLSKLQKFGSLIERFREQIANENAYDAAVIIARSSGIIDDLSNDETPEGVSRKE 513 Query: 528 VLDEFLNFTLRNEQNSYSSLQE--LISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGL 583 + E LN + +Y ++ L + LE + N+V +MT+H +KGL Sbjct: 514 NIQELLNGIKDFSETAYKEGKDDKLPAFLEGVALLTDQDGDKEGDQNKVTLMTIHASKGL 573 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E VF+ ++F + + Sbjct: 574 EFSNVFITGLEEELFPAQQCVTTP----------------------------------AA 599 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 EE RL YV +TRA + + ++ + + Sbjct: 600 LEEERRLFYVALTRAEKRAFMSFATSRYKNGQVVSSRPSRFI 641 >gi|294630996|ref|ZP_06709556.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14] gi|292834329|gb|EFF92678.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14] Length = 841 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 121/755 (16%), Positives = 230/755 (30%), Gaps = 133/755 (17%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P V + + + + + + Sbjct: 144 AAGEMKERVEHLVGPRANAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 198 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D ++T Sbjct: 199 RLMALVCRDLDLDP-KRYPPKSFSAKISNLKNELIDEEDF------------AAQATDGF 245 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 246 EKTLAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 302 Query: 187 DTSLIQWEVIRSLTEDFFVGKN-----THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DT+ Q+ ++R L + P L VGD QSIY+F GA + +L+ + Sbjct: 303 DTNHAQYALVRELVGTAEHPVDVPPSEADVPPAELCVVGDADQSIYAFRGATIRNILQFE 362 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I L ++RST IL+ + V E+ + + Sbjct: 363 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 401 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW + + + + A+ +A I + Sbjct: 402 --------LW-------TNAGAGARITGYVADTEHDE-------AQFVADEIDRLTDAGE 439 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +A D+ V R + + + + + ++D+ Sbjct: 440 ---------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDV 486 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480 +A R + + ED + +L P E + + E + + +++ Sbjct: 487 LAYLRVLANPEDSVPLRRILNVPKRGIGERAEAMVDALAQREKISFPQALRRVDEAYGMA 546 Query: 481 FQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 + + EL I + + P +L + S + I+ L Sbjct: 547 ARSANAVKRFNTLMEELRTIVESGAGPATILEAVLERTGYLAELQSSTDPQDETRIENLQ 606 Query: 531 EFLNFTLRNEQNSYSS----LQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLES 585 E L EQ L E + ++ + + + + V +MT+HTAKGLE Sbjct: 607 ELAAVALEFEQERGEGEPVALSEFLEQVALVADSDQIPDEEDGDGVITLMTLHTAKGLEF 666 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVVFL VF H + E Sbjct: 667 PVVFLTGMEDGVFPHMRALG----------------------------------QVKELE 692 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YVG+TRA ++L + + + S + + + + K+ + + Sbjct: 693 EERRLAYVGITRARERLYLTRSAMRSAWGQPSYNPPSRFLEEIPQTHVDWKRTGGSVAAP 752 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 S + + P Sbjct: 753 SGPASGVAASLSSSRSRSSASGASGFATRRTPDKP 787 >gi|147678864|ref|YP_001213079.1| superfamily I DNA/RNA helicase [Pelotomaculum thermopropionicum SI] gi|146274961|dbj|BAF60710.1| superfamily I DNA and RNA helicases [Pelotomaculum thermopropionicum SI] Length = 710 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 113/679 (16%), Positives = 213/679 (31%), Gaps = 140/679 (20%) Query: 48 KKAQTLQQASQTQCIEERFSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 K A +++ E L F + Q++ ++ N D ++L + Sbjct: 62 KAAGEMRERVGALVPETARDLWICTFHAACLRILRRQESFYGRDRNFVIYDADDQLTVLK 121 Query: 105 DEFIKIRDRFNTYKMFKSTLASLTL---------------------AKYLNAHYEEAKKK 143 D +++ + A + + Y++ K Sbjct: 122 DCIKELKLDDKKHPPRAVAAAISQAKNMLMGPGEYERHAYDQFSQAVSEVYSLYQDRLVK 181 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N +DF+DLI T L ++ + HIL+DE QDT+ Q+ ++ L Sbjct: 182 NNAVDFDDLIFLTVRLFREYP---QVLAYYQNRFRHILVDEYQDTNHAQYVLVNLLAA-- 236 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 + R L VGD Q IY + GA+ + +L +R + ++ L + Sbjct: 237 --------AHRNLCVVGDPDQGIYGWRGADIRNILSFERDYPE--------AKVVRLEQN 280 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL + + + + + Sbjct: 281 YRSTGFILEAANHIIRNNAGRREKRLWTAA--------------------------GRGF 314 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 P + + A +A I + + +D VL R Sbjct: 315 PVIVHYAA---------DEHAEADFVAGRILRL---------KELEKRPYRDFAVLYRTH 356 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + +I + I + IKD++A R +L+ D LS ++ Sbjct: 357 AQSRVIEEVF----VRAGIPYAIIGGLKFYERKEIKDMLAYLRLVLNPNDGLSLARIINV 412 Query: 444 PLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHIAQ 496 P E + KI R ++ E +++ A ++ + + +L + Sbjct: 413 PRRGIGEASLQKIAVFAREGGISLVEALERAAEIAGLTAAAKARSAALGALLRDLAERSS 472 Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELIS 552 + S + ++ RQ+ ++ E + LDEFL+ T + Q L+ + Sbjct: 473 YSSVTELAREVMEKTGYRQELLAENTVEARTRLENLDEFLSVTGEFDRQAEEKGLRSFLE 532 Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 + ++V +MT+H+AKGLE PVVFL VF H Sbjct: 533 NVALVTDLDYYD--EGADQVALMTLHSAKGLEFPVVFLTGMEEGVFPHSRSLPEPGELEE 590 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 L YVG+TRA ++L + + + Sbjct: 591 ERR----------------------------------LCYVGVTRARERLYLTHCWSRNL 616 Query: 673 EKKSNQRTWYDMVYDSFHN 691 + + + Sbjct: 617 YGAQRCNMPSRFLEEIPPH 635 >gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helicase [Mycobacterium kansasii ATCC 12478] Length = 768 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 107/656 (16%), Positives = 191/656 (29%), Gaps = 125/656 (19%) Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 L + ++E I + + + A Y+ + LDF+DLI Sbjct: 152 LANAISNLKNELID--PHRALAHLTDDSDDLARTVASVYAEYQRRLRAANALDFDDLIGE 209 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 T +L+ I + H+L+DE QDT+ Q+ ++R L P Sbjct: 210 TVAVLQTFPD---IAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDTE---DDVPPAE 263 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 L VGD QSIY+F GA + + +R + I L ++RST +IL+ + Sbjct: 264 LCVVGDADQSIYAFRGATIRNIEDFERDYP--------DATTILLEQNYRSTQNILSAAN 315 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 V + + LW + + Sbjct: 316 SVIARNAGRREKR---------------------LW-------TDAGEGELIVGYVADNE 347 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 + AR +A I + I D+ V R + + + Sbjct: 348 HDE-------ARFVAEEIDALAERGE---------ITYNDVAVFYRTNNSSRSLEEVF-- 389 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 I + I+D++A R + + D +S +L +P + Sbjct: 390 --IRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEAC 447 Query: 456 ICTQRHETETVYEYIQKFA---------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 + T + + + A ++ + L + Sbjct: 448 VAVYAENTGSSFADALQAAAEGKVPMLNTRAEKAIAGFVEILDGLRGRL-DDDLGELVEA 506 Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------------EQNSYSSLQELI 551 +L R++ S + +D L+E ++ + L Sbjct: 507 VLERTGYRRELESSTDPQELARLDNLNELVSVAHEFSADQANTAALEPDNEDVPDTGVLA 566 Query: 552 SELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 + LE+ H V +MT+HTAKGLE PVVF+ +F H Sbjct: 567 AFLERVSLIADSDEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPT- 625 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 E RL YVG+TRA +L + + Sbjct: 626 ---------------------------------ELSEERRLAYVGITRARQRLYVSRAMV 652 Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 S+ + + + ++ S + A + T Sbjct: 653 RSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGAPRSAPTRSA 708 >gi|327473788|gb|EGF19206.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK408] Length = 762 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 96/590 (16%), Positives = 185/590 (31%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVDKIRNFAASQEISLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDYKVTELVEAVLEKTGYAASLAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 ++ + S L +L L + +EV +MT+H AKGLE PVVFLV Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLIEISSDLLDYQGLARPA 651 >gi|261379427|ref|ZP_05984000.1| DNA helicase II [Neisseria subflava NJ9703] gi|284797877|gb|EFC53224.1| DNA helicase II [Neisseria subflava NJ9703] Length = 735 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 196/583 (33%), Gaps = 120/583 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + + +FAVG Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I + +I VL R + +I Sbjct: 333 -----AQFIVDETKALEREGWNLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ- 459 I + IK +A R ++ +DD + + ++ P I + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + T+++ A +K ++ I L + + IL + + + Sbjct: 434 NEQGITLWQAACN-AGAKATKIVAFVRLIEALRNQVGQLPLSEIIVGILKDSGLTEHYRT 492 Query: 520 RFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAH 565 + G + +D LDE +N + E +++ +L E +++ L + Sbjct: 493 QKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQA 552 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 A V++MTVH +KGLE VFL F + Sbjct: 553 GAGEKAVQLMTVHASKGLEFNAVFLTGMEEGRFPSEMSL--------------------- 591 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 -------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|227501454|ref|ZP_03931503.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] gi|227077479|gb|EEI15442.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] Length = 795 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 111/771 (14%), Positives = 218/771 (28%), Gaps = 164/771 (21%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + + V+ + ++ +L + Sbjct: 21 GAGSGKTAVLTRRIAYLMRHRGVNPWESLAITFTNKAAAEMKERVGSLVGPVAERMWVST 80 Query: 66 FSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 F + L Q + T + + L K Q + K R ++ Sbjct: 81 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDMQLDLKKYTPRVLANQISN 140 Query: 122 STLASL-----------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 + T + A Y+ + +DF+DLI + + Sbjct: 141 HKNELVGPAEAADKAQQTKNPFETTVADVYAEYQRRLRAANAVDFDDLIGEVVRIFTEH- 199 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + H+LIDE QDT+ Q+ ++ +L +G + L VGD Q Sbjct: 200 --KQVVEFYRRRFKHVLIDEYQDTNHAQYALVAALVGKGELGPDA----PELCVVGDSDQ 253 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY+F GA + + +R + I L ++RST IL + V + EN Sbjct: 254 SIYAFRGATIRNIEEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNENR 305 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + LW + + + + + Sbjct: 306 REKN---------------------LW-------TAHGDGESIVGYVADNEHDE------ 331 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 AR IA I + DI V+ R + + + I Sbjct: 332 -ARFIAAEIDALADKGH----------SYSDIAVMYRTNNSSRALEDIF----IRSGIPY 376 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463 + I+D++A R + + +D +S ++ P + +I ++ Sbjct: 377 KVVGGTRFYERREIRDMVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQGQIALHAENQG 436 Query: 464 ETVYEYIQKFANCGISKFQ--------HVIKYIHELIHIAQFCS--------PHDFFTLI 507 + + + + + + + T I Sbjct: 437 ISFGKALADVPRGDVPGLGTRAVNAVTKFNDMMEGIRAQIPGMRDEVTGQPDLGELLTAI 496 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS--------------------- 543 L A + + + +D L+E ++ + Sbjct: 497 LDATGYKAELEKSNDPQDGARLDNLNELVSVAREFTSEAANQLAAAGADAVDPNELLEEG 556 Query: 544 ---YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 SLQ + ++ + + V +MT+HTAKGLE PVVF+ F H Sbjct: 557 EAAPGSLQAFLEKVSLVADADQI-PDSETGVVTMMTLHTAKGLEFPVVFVAGWEDGQFPH 615 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 E RL YVG+TRA + Sbjct: 616 MRSLGNP----------------------------------KELSEERRLAYVGITRARE 641 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +L + + S + + + ++ + + Sbjct: 642 KLYLTRAILRSAWGNPVTNPASRFLAEIPEDLIDWRREDSDSDLTGSWGAD 692 >gi|297201841|ref|ZP_06919238.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083] gi|197717318|gb|EDY61352.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083] Length = 826 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 120/724 (16%), Positives = 224/724 (30%), Gaps = 135/724 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 128 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 182 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D ++T Sbjct: 183 RLMALVCRDLDLDP-KRYPPKSFSAKISNLKNELIDEEDF------------AAQATDGF 229 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 230 EKTLAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVSEHYRRRFRHVLVDEYQ 286 Query: 187 DTSLIQWEVIRSLTEDFFVGKN-----THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DT+ Q+ ++R L + P L VGD QSIY+F GA + +L+ + Sbjct: 287 DTNHAQYALVRELVGTSEHPVDVPPSEHDLPPAELCVVGDADQSIYAFRGATIRNILQFE 346 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I L ++RST ILT + V E+ + + Sbjct: 347 EDYPN--------ATTILLEQNYRSTQTILTAANAVIERNESRRPKN------------- 385 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW + + + + A+ +A I + Sbjct: 386 --------LW-------TNAGAGARITGYVADTEHDE-------AQFVADEIDRLTDAG- 422 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +A D+ V R + + + + + ++D+ Sbjct: 423 --------DAKAGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDV 470 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480 +A R + + ED + +L P + I + E + + +++ Sbjct: 471 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFPQALKRVDEAYGMA 530 Query: 481 FQ--HVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 + + +K + L+ + P +L + + + I+ L Sbjct: 531 ARSTNAVKRFNVLMEELRTIVESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQ 590 Query: 531 EFLNFTLRNEQ-----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 E L EQ SL + + L I + +MT+HTAKGL Sbjct: 591 ELAAVALEFEQESGEGEETGSLSDFLERVALVADSDQIPDEDEDGSGVITLMTLHTAKGL 650 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL VF H + Sbjct: 651 EFPVVFLTGMEDGVFPHMRALG----------------------------------QTKE 676 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 EE RL YVG+TRA ++L + + S S + + + + K+ + Sbjct: 677 LEEERRLAYVGITRARERLYLTRSSLRSAWGQPSYNPPSRFLEEIPAQHVDWKRTGAVAA 736 Query: 704 INKD 707 Sbjct: 737 PAGP 740 >gi|114565925|ref|YP_753079.1| superfamily I DNA/RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336860|gb|ABI67708.1| ATP-dependent DNA helicase PcrA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 696 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 115/646 (17%), Positives = 210/646 (32%), Gaps = 125/646 (19%) Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKK 142 + + ++ D + K ++ F + ++ + + + A K + + Y K Sbjct: 120 KTLLREENDYETKAEELLYIFKQAKNSLEKPEKYFYSFAVPDFIKERNCRVFSLYNSRLK 179 Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 VLDFEDLI+ L ++ + K +I++DE QDT+ Q+ R L Sbjct: 180 NLNVLDFEDLIVLCIRLFQQNPD---VLEKYQGWFQYIMVDEYQDTNYSQYFWARLLA-- 234 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 S +F VGD QSIYS+ GAEP + R +I+L + Sbjct: 235 --------SRHHNIFVVGDPDQSIYSWRGAEPYNIKRFLGDYP--------DSRLIKLEM 278 Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322 ++RS+ +IL+ + V E + + Sbjct: 279 NYRSSGNILSAANAVICNNEEREEKQLY----------------------------TQKG 310 Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382 ++ DS + AR IA I+ ++ ++ +D V R Sbjct: 311 QGEKLVHFCAGDSFQE-------ARFIADEINQLLRSENR---------HFQDFAVFYRT 354 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 + + I + IKD++A R + + D LSF ++ Sbjct: 355 HAQSRALEEAL----LYRNIPYHIVGARKFYERKEIKDILAYLRLVSNNNDLLSFERVIN 410 Query: 443 SPLFNFSEDDIFKICTQRHETE-------TVYEYIQKFANCGISKFQHVIKYIHELIHIA 495 P E + +I E E I ++ + + L + Sbjct: 411 VPRRGIGEKTLGRIKAYSEERGISLLDVLAEAESIPGIGRKMLTAMEDFYGMLKYLTDLV 470 Query: 496 QF-CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELI 551 S + ++ ++ + + L E + + E+ L+E Sbjct: 471 TSGASLMELLEQVIEVTGYIEELKKSKATDAEARIENLQELRSLVVEFEREGGQGLEEF- 529 Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 L Q + N + V +MT+H AKGLE PVVF+ VF Sbjct: 530 --LSQTALVQESDELDNSDHVLLMTLHGAKGLEFPVVFITGLEEGVFPS----------- 576 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT- 670 + EE RL YVG+TRA ++L + + Sbjct: 577 ------------------------YRSQTAEEMEEERRLCYVGITRAQERLYLSHALSRL 612 Query: 671 --SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 E+ + + + + + KK+ D + ++ Sbjct: 613 LYGYERSNPPSRFLYEIPEELLLSPQQKKVAKPVFQAGDRVLHAKF 658 >gi|292492977|ref|YP_003528416.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] gi|291581572|gb|ADE16029.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] Length = 1159 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 169/949 (17%), Positives = 303/949 (31%), Gaps = 113/949 (11%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 S I +DLW P Q+ + +++ L+ + Q + R Sbjct: 261 SPIGICRDLWARPGIQIESLPQWLGLAQLLLTCEGEWRRQATKAIGFPAPSAARNQE-EK 319 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 FL + N + + K E +++ + T + A L Sbjct: 320 QFLKAQKQSFLNFLGRLGEK------EDFRQALHSLRSLPPAHYTEAQWALMEALFQLLP 373 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 A + ++ +DF ++ L + + + +D +I H+L+DE QDTSL Sbjct: 374 LAVAQLQLVFQERGEVDFTEVAQRAVVALGEAEAPTDLALTLDYQIRHLLMDEFQDTSLS 433 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ LT + G RTL VGD QSIY F AE L+ R Sbjct: 434 QYILLERLTTGWEPGDG-----RTLLVVGDPMQSIYRFREAEVGLYLQAWRQ-----GVG 483 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + L ++FRS ++ V+ F A E +T + + +S + Sbjct: 484 QLPLVPLTLSVNFRSHQGVVDWVNHAFRQILPATE--EIATGAVPYSASHAFHPPRAEQA 541 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 QV + E R+ I Sbjct: 542 VQVHPFFGKDLAEEAEVVV-----------------RLVEKIKQ--------------AA 570 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 I +LVR R I L R + + L ++DL+AL + + Sbjct: 571 LNSTIAILVRSRGHLAEIVPLLRE----AGLRFRALEIEPLGSRPVVQDLLALTKALFHL 626 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQHVIK 486 D LS++ +L++P + D++ + + + IQ+ + G + V + Sbjct: 627 GDRLSWLTILRAPWCGLTLADLYILAGEDQQAAIWDRIQDEDCIQRLSGEGRQRLARVRR 686 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQNSYS 545 + + + SP + A G E LD + +E + Sbjct: 687 VLAKAFAGRRRVSPRRWVEGAWLALGGPACVPESTALEEASVYLDLLEQEAVADEILDFR 746 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 +L E + L P + ++IMT+H AKGLE V + G H Sbjct: 747 ALDEGVGRLFAPPDKL------ADETLQIMTIHRAKGLEFDTVIVPGLGRSPRYESHQLL 800 Query: 606 MHIMPSLNDDP-------GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + +D P + + + I + ++ E RLLYV +TRA Sbjct: 801 LWAERPASDSPSGNDNQLLLAPIAETGQQPDAIYHYIKGLHEEKASFENGRLLYVAVTRA 860 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 QL + + ++ + + ++ + E S Sbjct: 861 KHQLHLLGQVVLDKTDQPKAPPKRSLLASLWPAVKEEFEVAAPSRRETCTQEEREDSLSF 920 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 E R Q + K + + +E + Sbjct: 921 SEGGLFSRLSIQWQCPEPMPGVKTDIGGLPEAAS-------------ALDPIEFDWAGET 967 Query: 779 TFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYKNLLLSITR 830 G ++H+ LQ+I + + A E +N L Sbjct: 968 ARYMGTVVHRYLQLIAQEGLEHWNPARITGLGPALRRAL--MGQGVAANELENALERTQE 1025 Query: 831 L----LENPMMTTAMS---CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI-FIFE 882 + LE+P +S + +E +SG +N II ID+ + Q+ + +I + Sbjct: 1026 VLKQTLEDPRGRWILSSDHRQALNEYPLSGILN----GRIIRAVIDRTFVDQEGVRWIVD 1081 Query: 883 YKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSYPN-KSLVCLLIY 926 YKT H + E + QL Y ++ P + + L Y Sbjct: 1082 YKTGSHEGSDREAFLDREQERYRLQLESYGALVALKEPETQKIRLGLYY 1130 >gi|91217344|ref|ZP_01254304.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755] gi|91184452|gb|EAS70835.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755] Length = 772 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 104/696 (14%), Positives = 210/696 (30%), Gaps = 128/696 (18%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K + ++ ++ I + ++ ++ + + Y + K+ +DF+ Sbjct: 135 KYKQILSRISSFKNSLITVNAYLKNPELQEADAMAKRPRLGEIYQEYVDRCFKSGAMDFD 194 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K Q+ +IL+DE QDT+ Q+ ++R+L++ Sbjct: 195 DLLLRTNELLTRFPE---VLAKYQQKFKYILVDEYQDTNHSQYLIVRALSD--------- 242 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIY F GA +L ++ L ++RST +I Sbjct: 243 -RYQNICVVGDDAQSIYGFRGANINNILNFQKDY--------SDVKSFRLEQNYRSTKNI 293 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + +W + Sbjct: 294 VDAANSIIEKNKTKLDKV---------------------VW-------TENLEGSKIHVN 325 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 + + R +A ++ + + + VL R + I Sbjct: 326 RLVNDAEEG-------RFVANSV---------TEKCMQEGAKNGEFAVLYRTNAQSRSIE 369 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I +KD++A R I++ +D+ + ++ +P + Sbjct: 370 DALR----RKDIPYRIYGGLSFYQRKEVKDIIAYLRLIVNPKDEEALKRVINNPSRGIGQ 425 Query: 451 DDIFKICTQRHET--------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 I K+ + E + + +K + + I + Sbjct: 426 TTIDKLILAANHYKRTIFEIIENINKLDLSINKGTKTKLVNFVNMIKSFKVQNDSLNAFQ 485 Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSSLQELISELEQ 556 ++ Q+F E I+ ++E LN ++ + L LE Sbjct: 486 ITEIVSKKTGLLQEFKKDGTPEGIARIENIEELLNGISDFVEGQKELVDAKGSLTEFLED 545 Query: 557 YPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 A+ + V +MT+H AKGLE P VF+V +F Sbjct: 546 IALATSLDKETADEDRVALMTIHLAKGLEFPYVFIVGLEEDLFPS--------------- 590 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 + +S EE RL YV +TRA + + + K Sbjct: 591 -------------------AMSLSTRSELEEERRLFYVALTRAEKEAYLTYVVSRYRWGK 631 Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735 + + K + + ++Q Sbjct: 632 LIDAEPSRFIEEIDEKYLDYMIPKDDYRYKPL---------IDKDIFDEVDKSKLRQTKP 682 Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 E P P + + + P T + Sbjct: 683 ENGTPPPSHKPTEQQLKRLRKIKPEGDSTPTQKAKP 718 >gi|319405990|emb|CBI79622.1| DNA helicase II [Bartonella sp. AR 15-3] Length = 781 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 106/550 (19%), Positives = 184/550 (33%), Gaps = 109/550 (19%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L Y++ K DF DL++++ + + I + + +IL+DE QDT Sbjct: 174 IGRELYRSYQDRLKNLNACDFGDLLLHSISIFQNNPD---ILREYHNKFRYILVDEYQDT 230 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + H L VGD+ QSIY + GA+ +LR ++ Sbjct: 231 NTAQYLWLRLLAQ-------RHEKQINLCCVGDDDQSIYGWRGAKVDNILRFEKDF---- 279 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + S + G + S Sbjct: 280 ----FPAKIIRLERNYRSTSHILKTASHLISHNRDRLGKTLFSDQI-------------- 321 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + ++ + +DS + AR I I ++ Sbjct: 322 ------------NSDDEKVKIHAAWDSAEE-------ARAIGQEIEQAQRAGHSLNH--- 359 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 I +LVR L ++ + I+D +A R + Sbjct: 360 -------IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERREIRDALAYLRVV 408 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY------EYIQKFANCGISKF 481 + DDL+F ++ P + + + R + ++ + + Sbjct: 409 VQPADDLAFERIINIPKRGLGDATLHHLYNSARARSIPLFVAAAEIIATDELKPKIRNAL 468 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + V++ + ++ Q + +IL + +E L+ EQ Sbjct: 469 RDVVENFYRWQNMLQHTPHTELAEIILDDSGYTAMWQEDRSSEAPIRLENLKEMIRSMEQ 528 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L+S LE + + N V IMT+H+AKGLE VFL +F H+ Sbjct: 529 -----FESLLSFLEHVSLVMDSESNEKMNAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 583 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 +S EE RL YVG+TRA Sbjct: 584 RSLD--------------------------------EGGRSGLEEERRLAYVGITRAKKY 611 Query: 662 LIICKHSNTS 671 L I SN Sbjct: 612 LHIWCVSNRR 621 >gi|260774493|ref|ZP_05883407.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP 69.14] gi|260610620|gb|EEX35825.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP 69.14] Length = 718 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 183/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L + Y+EA + ++DF ++++ T++LL+ IR HIL+DE QDT+ I Sbjct: 167 QLYSAYQEACDRAGLVDFAEILLRTHELLRD---KQHIREHYQARFKHILVDEFQDTNNI 223 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + VGD+ QSIY + GA + + Sbjct: 224 QYAWLRMLAG----------PECHVMIVGDDDQSIYGWRGANIANIEKFTLEFP------ 267 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 268 --SVNTIRLEQNYRSTKTILQASNALIANNTERMGK---------------------ELW 304 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ S S ++ L + AR I + Sbjct: 305 -------TDGNEGERISVYSAYNDLDE-------ARFTVTKIKEWRDNGGLL-------- 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R I ++ Sbjct: 343 --NDCAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDSLSYLRLIANR 396 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P+ + + I R T+++ N Sbjct: 397 HDDSAFERVINTPVRGLGDKTLETIRFAARDRGCTLWDASIALLNEQVLTGRAAGALSRF 456 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I+ L + + ++ + G + I+ L+E + T + E+ Sbjct: 457 VELINALEDDSAEMPLYVQTDHVIKTSGLYAMYEQEKGEKSKARIENLEELVTATRQFEK 516 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 517 PEEADEMSMLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 576 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 577 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 602 Query: 660 DQLIICKHS 668 +L I Sbjct: 603 QKLYITHAE 611 >gi|296118283|ref|ZP_06836864.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM 20306] gi|295968841|gb|EFG82085.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM 20306] Length = 926 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 114/782 (14%), Positives = 237/782 (30%), Gaps = 159/782 (20%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-------TQCIEERFSLLS 70 + + P ++ NK + E + A+ + A+ + + L+ Sbjct: 176 RGVAPWEILAITFTNKAAAEMKERVGQLVGPVAERMWVATFHSICVRILRQQAQLVPGLN 235 Query: 71 SFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTLA 125 + F + ++T +++ ++ +Q + ++ + T Sbjct: 236 TNFTIYDGDDSRRLLTMIAKDMQLDIKKFTSRVLANQISNHKNELTSPDTALAEAEKTKN 295 Query: 126 SLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 L + A Y+ + +DF+DLI + + + + H+LIDE Sbjct: 296 PFELTVARVFAEYQRRLRAANAVDFDDLIGEVVRIFVQHP---QVVEFYRRRFKHVLIDE 352 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ Q+ ++ +L D + L VGD QSIY+F GA + + +R Sbjct: 353 YQDTNHAQYSLVAALVGD------DRENGPELCVVGDSDQSIYAFRGATIRNIEDFERDY 406 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST IL+ + V + EN + + Sbjct: 407 P--------GARTILLEQNYRSTQTILSAANAVIAQNENRRKKN---------------- 442 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW D + + + + AR IA I + Sbjct: 443 -----LW------TDHGEGEKVIGYVADNEHDE--------ARFIASEIDALADKGR--- 480 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 D+ ++ R + + + I + I+D++A Sbjct: 481 -------NYSDLAIMYRTNNASRALEDIF----VRSGIPYKVVGGTRFYERREIRDIIAY 529 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-----TETVYEYIQKFANCGIS 479 R + + +D +S ++ P + +I T + +Y Q + Sbjct: 530 LRIMDNPDDSVSLRRIINVPKRAIGDKAQAQIATHADNLNISFGKALYFAEQGEVPGLGT 589 Query: 480 KFQHVIKYIHELIHIAQFCSPH------------DFFTLILGAKKGRQQFISRFGNE--- 524 + + + ++++ + P + + IL A + + + + Sbjct: 590 RAVNAVTKFNDMMSGIREQIPAMINDVTKQPDLGELVSAILDATGYKAELEASNDPQDGA 649 Query: 525 VIDVLDEFLNFTLRNEQN-------------------------SYSSLQELISELEQYPP 559 +D L+E ++ + SLQ + ++ Sbjct: 650 RLDNLNELVSVAREFSSEAANQLAFDGSDSDIEVAPELSEGEAAPGSLQAFLEKVSLVAD 709 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + V +MT+HTAKGLE PVVFL F H Sbjct: 710 ADQI-PENESGVVTLMTLHTAKGLEFPVVFLTGWEEGQFPHMRSLGDP------------ 756 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 E RL YVG+TRA ++L + + S+ Sbjct: 757 ----------------------KELSEERRLAYVGITRAREELYLTRAILRSSWGNPMTN 794 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 + + + ++ + +S+ +S ++ + Sbjct: 795 PASRFLGEIPEDLIDWRREEPQSSMGSAWDYDDSYSYGRSYDSSWSGWGRSSRSAATSPS 854 Query: 740 PK 741 + Sbjct: 855 QR 856 >gi|307246245|ref|ZP_07528326.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255229|ref|ZP_07537044.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259663|ref|ZP_07541387.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852854|gb|EFM85078.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861778|gb|EFM93757.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866308|gb|EFM98172.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 732 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 116/611 (18%), Positives = 208/611 (34%), Gaps = 121/611 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAG----------KTGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRDRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGET--QASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A +L I K + + + R +++ + + + ++ + Sbjct: 609 AKKKLTISYAELRRLYGKEERHIASRFIAELPEQHIREVRLRGSINRAASFAPSTPFAKN 668 Query: 718 HPENTPLEREE 728 + T E+ Sbjct: 669 SAKTTASCLED 679 >gi|90021650|ref|YP_527477.1| DNA helicase/exodeoxyribonuclease V subunit A [Saccharophagus degradans 2-40] gi|89951250|gb|ABD81265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Saccharophagus degradans 2-40] Length = 1155 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 162/971 (16%), Positives = 314/971 (32%), Gaps = 128/971 (13%) Query: 17 YKDLWPLPYFQVSDINKYVSL-SMETGNPTILKKAQTLQQASQT--QCIEERFSLLSSFF 73 ++ + + ++ + + E G+ + + + T + +E + L+ Sbjct: 243 VQESLQIFEGPLLELAHFAAGKLKEDGSTHPITLLEDQFTFTDTSFETLESFWVPLTKLL 302 Query: 74 LTQKFTPQKNIIT------------QEINKKSPDL----------KEKLKKSQDEFIKIR 111 LT+ T +K + + I ++ L+ + + Sbjct: 303 LTESGTFRKTVNKNTGFPTSKDKNEKAILQERKTAFLNLLGEIKSIPGLEAALAQLSSFP 362 Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIR 170 + T + +++ A + L AH + K++ DF ++ ++ L + D + Sbjct: 363 VKGYTEQQWQTLDALIQLLPLCTAHLKLVFKESSQTDFTEITLSALRALGSESDTPTDLS 422 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 +D +NH+LIDE QDTS IQ +++ LT+++ + RTLF VGD QS Y F Sbjct: 423 LILDYRLNHVLIDEFQDTSSIQLNLLKLLTQEWQPDEG-----RTLFIVGDGMQSCYGFR 477 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 A L + S + L ++FRS ++ V+ VF Sbjct: 478 NANVGIFLNIR-----DNGLENVPMSAVNLCVNFRSNQAVVNWVNDVFK----------- 521 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + + G V V + E D+ + A+ + Sbjct: 522 ----VAFPAQNDINRGAVSYQPSVPFDTKELLSSHVECHGFVGDNGNE-----AEAQFVT 572 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I+ + V + I +LVR R I R I+ D Sbjct: 573 SIIAQQLE-----------VNPNQSIAILVRNRPHLTKIITALRS----QNIAYQAVDID 617 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 L ++DL+ + R + Q D L+++ L++P S ++ + +T Sbjct: 618 PLLARPCVQDLLTITRVMQDQSDYLAWLAFLRAPWCGLSLSELTVLLGDHIYADTQPATH 677 Query: 471 QKFANCGIS------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 FA + Q + + H Q + A G I Sbjct: 678 NVFATLHNEDLLSLLNTDTKNRVQRARMLLAQSFHQTQRKPLAALVESLWFALGG--ALI 735 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + NE+ D T + + L++ AN V++MT+H Sbjct: 736 ADNSNELDDARTYLQLLTKHEKGGRIRQWDAFYAGLQKLYAR-PTPVDANVQPVQLMTMH 794 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK----SRNNIVSD 634 +KGLE VF+ + + + P S + + + Sbjct: 795 KSKGLEFDTVFVCGLSRPSKADDSPLLFWHERLNSYSEPQTLLSPLSPKIESEADPVYAF 854 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 L + K+S E RLLYV TRA +L I + + M+ + Sbjct: 855 LKEEGKQSRLLEDTRLLYVACTRAKARLYITAALTETPAAEIKPPANNTMLARIW----- 909 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 ++I + + + P N +E + + L + + + Sbjct: 910 -------DAIQEQIITHVDPNVDMPSNDSVE-TGSNYVRFLTPEAISGLHGLVDSALVTE 961 Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---------NFI 805 + D E DN G ++H++L VI + Sbjct: 962 TEKQKTVFDNSDINIFEDREVDNTAAAIGTLMHRILAVICDDGLDAWPLEKLAGMHKPWR 1021 Query: 806 TSYCTKNAKLWPAKEYKN-LLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKD 861 A++ + S+ ++L++ +S S+ E V Sbjct: 1022 AQLTANGVPAATAEQALQTITQSVLKMLDDETARWLLSNSHPVSHCEWVVHYGSQPRDA- 1080 Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDSYP 916 ID+ I +I +YKT E + + Q+ Y+K++K+ P Sbjct: 1081 -----VIDRFFIEGNTAWIVDYKTSTPNKGETLEQFVSAQQAEYQPQVDFYQKLVKEIVP 1135 Query: 917 NK-SLVCLLIY 926 + ++ L + Sbjct: 1136 PEITIKKALYF 1146 >gi|302877434|ref|YP_003845998.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] gi|302580223|gb|ADL54234.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] Length = 723 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 97/629 (15%), Positives = 201/629 (31%), Gaps = 118/629 (18%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 ++ Q+ +++ ++ + A Y+ ++ V+DF +L++ +LL Sbjct: 149 REMQNFISGSKEQGLRAHDVEAFDPYTRRKVDVYAEYDAQCQREGVVDFSELLLRCFELL 208 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + + +R + +HIL+DE QDT+ +Q++ ++ L LFAVG Sbjct: 209 SRNES---LRTHYQERFHHILVDEFQDTNPLQYQWLKLLAGQ----------HNALFAVG 255 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + R + A +I+L ++RS +IL + + S Sbjct: 256 DDDQSIYAFRGANVGNMKDLLRDFKVEA--------VIKLEQNYRSHGNILDAANALISN 307 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 N G + LW Q + + + D Sbjct: 308 NRNRLGKN---------------------LW------TSEQGGEKLRVYEAPTDVEE--- 337 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I + ++ ++ +L R + ++ Sbjct: 338 -----ANFIVGEIRQLKTEG----------LKLTEMALLYRSNAQSRVLEHAL----VSA 378 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 +S + IK +A R + + +DD + + ++ P I +I + Sbjct: 379 GLSYRVYGGLRFFERQEIKHALAYLRLMQNTDDDNALLRIINYPTRGIGARSIEQIQDSA 438 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + T+++ + K + I + + +L + + S Sbjct: 439 KMHGTTLWDAAARAG----GKVSAFVGLIEAMRSATSALPLPEIMEHVLVHSGLIEHYQS 494 Query: 520 RFG------NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 G E ++ L E + +N SL ++ + + Sbjct: 495 EKGAKKREAEERLENLKELVTAATLFVHENEDDSLTSFLTHASLEAGE--HQAGDQDDAL 552 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MTVH AKGLE VF+ +F H++ Sbjct: 553 HLMTVHAAKGLEFNAVFITGLEENLFPHQNS----------------------------- 583 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 +E RL+YV +TRA +L + + + + + + Sbjct: 584 -----QRVDGGLDEERRLMYVAITRARRRLYMSFAQRRMLNGQVSYGAPSSFLKELPEDL 638 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + + + + Sbjct: 639 LQWLSAREAPRNPFASFGYSAPAAPVQHS 667 >gi|255326665|ref|ZP_05367741.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296] gi|255295882|gb|EET75223.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296] Length = 990 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 127/818 (15%), Positives = 236/818 (28%), Gaps = 149/818 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + P + +S + + + A L+ + Sbjct: 206 AAAEMRERIEALVGPRAKHMWISTFHSFCVRVLRR-----EAAALGLKSTFTIYDSTDS- 259 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L S + + K + + + LK +L + R + ++ T Sbjct: 260 QRLLSLIIKELNLDTKKFTAKAVGNRISALKNELVSA----EAYASRVASDNPYEKT--- 312 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + + LDF+DLI T LLKK I ++ HIL+DE Q Sbjct: 313 ---IAQIYTVYTQRLRAANSLDFDDLIGRTVFLLKKFPE---IANYYRRKFRHILVDEYQ 366 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRT------LFAVGDEKQSIYSFHGAEPKRVLRE 240 DT+ Q++++R L L VGD QSIY+F GA+ + + Sbjct: 367 DTNHAQYQLVRELVGAHTKAPADRGPYPDAVPPAELTVVGDSDQSIYAFRGADIRNITDF 426 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ I L ++RST +IL+ + V + + Sbjct: 427 EKDYPN--------AHTILLEQNYRSTQNILSAANAVIERNPDRRPKK------------ 466 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW S + + + S AR I I + Sbjct: 467 ---------LW------TASGAGAKIIGYVA--------ESEHAEARYITREIDRLADE- 502 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 +Q D+ + R + + + + + IKD Sbjct: 503 --------HGVQPGDVAIFYRTNAQSRTLEDML----MRAGLPYRVVGGTRFYERKEIKD 550 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI- 478 +A R + + +DD++ +L P + + Y ++ A+ Sbjct: 551 ALAYLRALSNPDDDVNVRRILNEPKRGIGAKSESVVAEYASANRISFYVAARQAADIPAL 610 Query: 479 -----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 K+ ++ + +L IA+ +L + + ++ L Sbjct: 611 GAAAVKKYAEFVRLMDDLAQIARTEPAATCLEAVLEQTGYLAALRASKDIQDESRVENLS 670 Query: 531 EFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH-------------------- 569 E L+ + E + + L++ + + + Sbjct: 671 ELLDAMVEFETENPGADLEQFLEHVALVADADSIPNRPASAEGENASAAQIAAEAAEAKA 730 Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 V +MT+HTAKGLE PVVFL +F H+ Sbjct: 731 QGMVTLMTLHTAKGLEFPVVFLTGMEHGLFPHQRALT----------------------- 767 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 + E RL YVG+TRA ++L + + + KS + + Sbjct: 768 -----------DEKEMSEERRLAYVGLTRAMERLYLTRSETRTMWGKSQFNPPSPFLEEI 816 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 K+ + AY + Sbjct: 817 PEELIEWKRTAGFSGFGASGMGAYGARGGGSYGGSSYGNSYGGGYSGGSRSGYGSGGYSG 876 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR-GLI 785 + Y S + + S+ T + G Sbjct: 877 GYGSGGYSFGGSRGSYDPYESRPARRSEPSTADINGSA 914 >gi|293401242|ref|ZP_06645386.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305368|gb|EFE46613.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 759 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 106/607 (17%), Positives = 196/607 (32%), Gaps = 119/607 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A+YE+ K+ LDF+DL+I +LK ++ +R K + +I +DE QD Sbjct: 167 QIKADVYAYYEKRLKEMYGLDFDDLLIFAYRILKDKEE---VRAKWQRRFTYIHVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 +Q+ +IR L D L VGD Q+IY++ GA+ ++ +R Sbjct: 224 VDNLQYAIIRLLVGD----------HSYLCVVGDPDQTIYTWRGAQVDIIMNFERDFP-- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST IL + + N Sbjct: 272 ------DSKTVILNQNYRSTQPILNGANALIRNNRNRIEKDLF----------------- 308 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + + +T+ D+ +A I + + Sbjct: 309 ----------TEVEGDNPIIHFTAMDDANEPV--------WVASRIMALSHSG------- 343 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +DI VL R + + D++I D IKD ++ R Sbjct: 344 ---VCYRDIAVLYRSNYLSRGLEKAL----LDFRIPYRIYGGIRFYDRAEIKDALSYLRL 396 Query: 428 ILSQEDD--------LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 + +++D LS ++ P + I Q T I K G Sbjct: 397 LAPKQEDDEKELYKNLSIKRIINMPKRGIGAKTMELIEQQAEHDNTNMYEIIKQYEIGKG 456 Query: 480 K----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535 K Q + I E + S +L E ++ + E ++ Sbjct: 457 KAKANIQAFVALIEECRQLVNEISIDQLLEKVLEDSGYLDMLREDKEIERLENIKELISD 516 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 +N+ L L++ + ++ + V++MT+H AKGLE VF+ Sbjct: 517 IADYVENNPQG--SLQEYLQEISLYTDKEADSSGDFVQLMTIHAAKGLEFDNVFVYSLCE 574 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + ++ EE RL YV Sbjct: 575 GIFPNDKSVI--------------------------------EGGQAALEEERRLAYVAF 602 Query: 656 TRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 TRA QL + +S ++ K+ R ++ + + + ++ A+ Sbjct: 603 TRARKQLFLSDSYGYSYVLDKLKTTSRFVKELPEEYLEEVGAKPRNHFASDVDTFSGNAF 662 Query: 713 EWSTHHP 719 S Sbjct: 663 LSSQAPQ 669 >gi|325689990|gb|EGD31994.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK115] Length = 766 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 121/819 (14%), Positives = 243/819 (29%), Gaps = 161/819 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53 G ++ L ++ + + V+ N + ++A+ L Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKTEAQDCLIATF 87 Query: 54 -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEF 107 + + + ++ T K I+ ++ K + + L + Sbjct: 88 HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKNLNLDPKKWNERAILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D + + Y++ +++ +DF+DLI+ T L + Sbjct: 148 NDLIDEVAYANLADDMYT--EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD-- 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 204 -VLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL ++V N + Sbjct: 253 GWRGADMQNILDFEKDYP--------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + ++ + D + A Sbjct: 305 N---------------------LW-------TQNEDGEEIVYYRANDEQDE-------AL 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI + KD VL R + + I Sbjct: 330 FVARTIDQLSREG----------YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMV 375 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D+++ I + D++S+ ++ P + KI + ++ Sbjct: 376 GGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISL 435 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + +L + + +L ++ Sbjct: 436 LDASANILLSPVKGKAAQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQA 495 Query: 522 GNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEV 572 E I+ ++EFL+ T +++ S L +L L + +EV Sbjct: 496 TLESQARIENIEEFLSVTKNFDESPDNPTDESGLDKLSRFLNDLALIADTDDGDTESSEV 555 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFLV VF + Sbjct: 556 TLMTLHAAKGLEFPVVFLVGMEENVFPLSRASEDEDELEEERRL---------------- 599 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 YVG+TRA L + ++ K+N + + + Sbjct: 600 ------------------AYVGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDL 641 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + P N+ + T + + S + Sbjct: 642 LDYQGLA------------------RPSNSSFKVSYTNSDTNSDTSQFGQGMSLAQALQE 683 Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIH 787 PS+I T +S S + G I H Sbjct: 684 RKRQAAPSSISTGSLPFGKSGQSQPSKPEVAWAIGDIAH 722 >gi|165976747|ref|YP_001652340.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876848|gb|ABY69896.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 732 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 112/551 (20%), Positives = 192/551 (34%), Gaps = 121/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R+ T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 609 AKKKLTISYAE 619 >gi|190150646|ref|YP_001969171.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263993|ref|ZP_07545594.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915777|gb|ACE62029.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870682|gb|EFN02425.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 732 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 116/611 (18%), Positives = 210/611 (34%), Gaps = 121/611 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R+ T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDETEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A +L I K + + + R +++ + + + ++ + Sbjct: 609 AKKKLTISYAELRRLYGKEERHIASRFIAELPEQHIREVRLRGSINRAASFAPSTPFAKN 668 Query: 718 HPENTPLEREE 728 + T E+ Sbjct: 669 SAKTTASCLED 679 >gi|118602354|ref|YP_903569.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567293|gb|ABL02098.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 718 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 98/545 (17%), Positives = 183/545 (33%), Gaps = 110/545 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE ++N ++DF +L+I + +LLK + HIL+DE QDT+ + Sbjct: 173 EVFELYEAYCQENDLIDFAELLIRSYELLKNN---TDLLNHYQARFEHILVDEFQDTNTV 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q++ I+ L + +F VGD+ QSIY + GA+ + + + Sbjct: 230 QYKWIKLLF----------NGHNKIFCVGDDDQSIYGWRGAKIENITKLCTDF------- 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL + + + N G S LW Sbjct: 273 -TPIETIRLKQNYRSTGNILNASNALITHNVNRMGKS---------------------LW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 N + + A + I +I Sbjct: 311 -------TDAGNGELIDVYEARTETDE-------ANYVISNIQKLITNG----------A 346 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + + Y I + ++ IKD ++ R I + Sbjct: 347 SPSDCSILYRFNAQSRIFEEAL----IKYNIPYIIYGGLKFFEYTEIKDALSYLRLIENS 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK----FANCGISKFQHVIK 486 D+++F ++ P + KI + ++++ + + I Sbjct: 403 ADNVAFERVVNFPTRGIGNVTVKKIRTFAQDNHTSLFQAAIQISSILPTRAANALSSFIN 462 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546 I ++ + + + T +L + + + L + + T + + Sbjct: 463 LIKQITDDTKHLNLSEKVTNLLNTSGLIMHYSNDKIGSKKENLKKLITITKQYNHEQDNK 522 Query: 547 LQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 + E++ + +A+ N V++MT+H+AKGLE P VFLV +F + K Sbjct: 523 MSEVMGFISLTSLDSSGNTNASINQNVQLMTIHSAKGLEFPCVFLVGMEEDLFPSRQSKN 582 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + +E RL YVGMTRA +L + Sbjct: 583 EPHLT----------------------------------DEERRLCYVGMTRAMKKLSLS 608 Query: 666 KHSNT 670 Sbjct: 609 YAIKR 613 >gi|268680252|ref|YP_003304683.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618283|gb|ACZ12648.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] Length = 681 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 99/619 (15%), Positives = 204/619 (32%), Gaps = 126/619 (20%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIK-IRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 K I + +N S + + + D ++ + + L YE+ Sbjct: 115 KKRILKSLNTSSELPTSMIASEISRYKTSLLDPKMAWEKAEQHH--YQVIAKLYEQYEDY 172 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 N ++DF+DL++ +L+ + + + + +I++DE QDT+ +Q++++R L Sbjct: 173 LLSNNLVDFDDLLVLPYKILESDE---RLCEETSRRYQYIMVDEYQDTNELQYKLLRKLC 229 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + L VGD+ QSIY + GA K +L + I++L Sbjct: 230 H----------THSNLCVVGDDDQSIYGWRGANIKNILEFHESFEN--------VKIVKL 271 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST IL + + G +ST G+ + + Sbjct: 272 EKNYRSTTQILKAANDLIEHNRGRIGKVLEST---------KGEGKAIDVL--------- 313 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + + A IA I +I + + +DI VL Sbjct: 314 -----------------ESHDENQEALSIARKIRKLIESG----------VSPRDIAVLY 346 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + + K I + +KD+++ R I + DD S + Sbjct: 347 RINALSRSLEEGLNKEK----IPYNMVGGVKFYERAEVKDVISYLRVIANPHDDFSIKRI 402 Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK---------FQHVIKYIHEL 491 + P + + +I ++ I K + ++ I + Sbjct: 403 INRPKRGLGKVTMERIFKAAYDNSQSIYAYITCNESAIEKEATKKAALALKAFVENIAHM 462 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYS-SLQE 549 + Q S +D + A ++ + ++ + E + +DEF + + + + Sbjct: 463 QN-VQQNSTYDMIDAMEEAFAIKEYYNNQPDSLERLSNIDEFYGLFRDYVKQNPHMGVDD 521 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ++EL + IM++H +KGLE +F++ F Sbjct: 522 FLNELALQSDQDHIDSE----NISIMSIHASKGLEFEYLFVIGLEEGFFPLVGDGS---- 573 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 EE RL YV +TRA +L + + Sbjct: 574 ---------------------------------DIEEERRLGYVAITRAKKELTLSFSGS 600 Query: 670 TSNEKKSNQRTWYDMVYDS 688 + + + + + ++ Sbjct: 601 RFYKGRRTELSKSRFLKEA 619 >gi|125717696|ref|YP_001034829.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36] gi|125497613|gb|ABN44279.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36] Length = 762 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 95/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + + +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDFTVTELVEAVLEKTGYSAALAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 +++ S L +L L + +EV +MT+H AKGLE P+VFLV Sbjct: 516 FDESPDNPADESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPIVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNQPTRFLREISSDLLDYQGLARPA 651 >gi|169831771|ref|YP_001717753.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis audaxviator MP104C] gi|169638615|gb|ACA60121.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis audaxviator MP104C] Length = 718 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 99/548 (18%), Positives = 182/548 (33%), Gaps = 118/548 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L + A Y+ ++N LDF+DL+ L ++ + + + H+L+DE QD Sbjct: 172 ELTARVYAAYQARLERNNALDFDDLLFLAVRLFREFP---PVLEQYRRRFLHLLVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++ L + + R L VGD Q IY + GA+ + +L +R Sbjct: 229 TNHAQYVLVNLLAQ----------THRNLTVVGDPDQCIYGWRGADLRNILNFERDYP-- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +++L ++RST IL + V + + Sbjct: 277 ------DARVVKLEQNYRSTGRILEAANHVIRFNRHRKEK-------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 +LW ++ + D + AR +A I + Sbjct: 311 -ELW-------TARGAGEAPVLHQARDERAE-------ARFVAREIRRLRAQGR------ 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +D V R + ++ + + D IKDL+A + Sbjct: 350 ----SYRDFAVFYRTHAQSRVLEDEL----LRHGVPYTIIGGVKFYDRKEIKDLLAYLKL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISK 480 I++ +DD++ ++ P + + K + + I+ + Sbjct: 402 IVNPDDDVALTRIINVPRRGVGKASLVKFFAYVRESSVACADALREADRIRGLSAGVREA 461 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537 + + + +L + E + L EFL+ T Sbjct: 462 MGALGEQLARWRER--EGGVTGLTEQVLEESGYLTALEAERTVEARTRMENLSEFLSVTR 519 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + +L E +++L Y + ++ V +MT+H+AKGLE PVVFL V Sbjct: 520 EFDLQRGGTLAEFLNDLALYTDLDRFDGESSQ--VTLMTLHSAKGLEFPVVFLTGMEEGV 577 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H + EE RL YVG+TR Sbjct: 578 FPHTRAFSEPV----------------------------------EMEEERRLCYVGITR 603 Query: 658 ASDQLIIC 665 A ++L + Sbjct: 604 ARERLFLT 611 >gi|254497559|ref|ZP_05110348.1| DNA-dependent helicase II [Legionella drancourtii LLAP12] gi|254353217|gb|EET11963.1| DNA-dependent helicase II [Legionella drancourtii LLAP12] Length = 725 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 111/580 (19%), Positives = 196/580 (33%), Gaps = 117/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + + YE+A + V+DF +L++ T++LL+ I Q IL+DE QDT+ I Sbjct: 172 AIYSAYEQACQTAGVIDFAELLLRTHELLRDNPE---ILAHYRQRFQAILVDEFQDTNTI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L + + AVGD+ QSIY + GA+ + + + Sbjct: 229 QYAWIRLLAGEGSA----------VLAVGDDDQSIYGWRGAKVENIQQFANDF------- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + II L ++RST+ IL + + + + G LW Sbjct: 272 -KGTKIIRLEQNYRSTSTILDAANALITHNNSRMGK---------------------DLW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ S F+ L + AR ++ I I + Sbjct: 310 -------TAGSAGEKILVFSAFNELEE-------ARFVSERIMMEINQG----------V 345 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 A +I +L R + +I I+ D +KD +A R +++ Sbjct: 346 SADEIAILYRSNAQSRVIEEAL----LRAGIAYRIYGGLRFFDRAEVKDTLAYLRLLVNP 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ------KFANCGISKFQHV 484 DD +F ++ P E + + + E ++++ + + Sbjct: 402 GDDTAFERVVNFPTRGIGEKTLEDVRHYAKSEQCSLWQAAKTLLQSGEMPQRAGLALAKF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN-- 539 + I EL + + ++ + +D L E +N + Sbjct: 462 VDLIEELQRNTVEMELDEQLSSVIQMSGLYAHFSKIKGDKSESRLDNLQELINAAKQFRY 521 Query: 540 EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 EQ+ L + + L + A+ V +MT+H AKGLE P+VFLV VF Sbjct: 522 EQDEEEELPLVNAFLAHASLEAGEMQADAHERSVHLMTLHAAKGLEFPIVFLVGLEEGVF 581 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 K + EE RL YVGMTRA Sbjct: 582 PGKQS----------------------------------MEEPGRLEEERRLCYVGMTRA 607 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 +LI+ + + + ++ Sbjct: 608 MQKLILSYAEVRRQYGREEYHRPSRFLRELPQELLDEVRV 647 >gi|258625863|ref|ZP_05720738.1| DNA helicase II [Vibrio mimicus VM603] gi|262163724|ref|ZP_06031464.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223] gi|258581827|gb|EEW06701.1| DNA helicase II [Vibrio mimicus VM603] gi|262027704|gb|EEY46369.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223] Length = 723 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 116/690 (16%), Positives = 220/690 (31%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ T +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + + I L ++RST IL + + + G Sbjct: 258 GARVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLIANRNDDTAFERVINTPPRGLGDKTLDTIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N ++ I+ L H + + + G Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLFEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+V +F + Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|217967779|ref|YP_002353285.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724] gi|217336878|gb|ACK42671.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724] Length = 625 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 102/589 (17%), Positives = 210/589 (35%), Gaps = 113/589 (19%) Query: 101 KKSQDEFIKIRDRFNTYKMFKS--TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 + +++ +++D+ T + F + + + + + YE+ +KN LDF DL++ + + Sbjct: 137 RDIKEKISRLKDQLITPQEFSNIISNSFDEIVLEVYKKYEKELRKNNALDFADLLLYSIN 196 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 LL ++ I + +I ++L+DE QDT+ Q+E+ + + D + Sbjct: 197 LLYEKPA---ICGFLQDKIEYVLVDEYQDTNKAQYELFKIIVLD----------KQKFSV 243 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD+ QSIYSF GA+ + + + ++ + II L ++RST IL + + + Sbjct: 244 VGDDDQSIYSFRGADYQNIFKLEKDFKN--------LKIIFLTKNYRSTQQILEIANALI 295 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + + +LW + + ++ F +L + Sbjct: 296 ANNDKRYPK---------------------ELW----------SDKRDGTYPILFRALNE 324 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 E A + I + + +I +L R + + Sbjct: 325 EDE----ANFVIRQIRLELAKGR----------KLSEIAILYRTNRQSRPFEEAL----I 366 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 I D +KD++A I + D +S ++ P E I Sbjct: 367 RNNIPYKVIGGLSFFDRKEVKDIVAYLNIIYNPNDLISLKRIINVPKRGIGEATFNMIRE 426 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++ ++ E I + + + + + + + I+ +F Sbjct: 427 YYNKGYSLLEAIGEVSRIKRE-VKSFYDLWKYFLDLKSSLNIRELIATIIDKTNYLSEFQ 485 Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 ++ E +D L E ++F + +L + +S L ++ + V ++ Sbjct: 486 NQGKEELTIRMDNLMELMDFADNFPGKTQDTLGDFLSHLSLTSSKLESSLEEGK--VSLI 543 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+ KGLE VVFLV + H Sbjct: 544 TLHSVKGLEFEVVFLVGMEEGLLPH----------------------------------- 568 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 + +E RL YVG+TRA ++L + N + R ++ Sbjct: 569 YNAATREEIQEERRLCYVGITRAKEKLYLSYAVKRYNRYQEPSRFIEEI 617 >gi|222149095|ref|YP_002550052.1| DNA helicase II [Agrobacterium vitis S4] gi|221736080|gb|ACM37043.1| DNA helicase II [Agrobacterium vitis S4] Length = 858 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 101/597 (16%), Positives = 184/597 (30%), Gaps = 111/597 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L A Y+ K DF DL+++ + + + Q +IL+DE QDT+ Sbjct: 246 RELYAAYQARLKSLNACDFGDLLLHPIRMFRANPD---VLKDYHQRFRYILVDEYQDTNT 302 Query: 191 IQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 Q+ +R L + + + VGD+ QSIY + GAE +LR ++ Sbjct: 303 AQYMWLRLLAQRPSTKTADGKVTNGTVNICCVGDDDQSIYGWRGAEVDNILRFEKDFP-- 360 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I+L ++RST IL + + E G + + Sbjct: 361 ------GAKVIKLERNYRSTEHILGAAGFLIAHNEGRLGKTLFTDRV------------- 401 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 N ++ + +DS + AR + I + Sbjct: 402 -------------DPNDEKVVVHAAWDSEEE-------ARAVGEEIEQLQRNQH------ 435 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D+ +LVR L ++ + L I+D MA R Sbjct: 436 ----KLNDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRM 487 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480 + DDL+F ++ +P + + + R + + Sbjct: 488 VCQPADDLAFERIVNTPKRGLGDTTVRTLHDYARKRDIPMLAAASDIIETDELKPKARKA 547 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 V+ + + + IL + + E ++ L E + Sbjct: 548 LFDVVTDFRRWQDLLENTPHTELAEQILDESGYTAMWQNDKSAEAPGRLENLKELIRSME 607 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E + S +E + + N + V IMT+H+AKGLE VFL + Sbjct: 608 AFES--------MRSFMEHVSLVMDAETNENLDAVSIMTLHSAKGLEFETVFLPGWEEGL 659 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H+ + ++ EE RL YVG+TR Sbjct: 660 FPHQR--------------------------------ALDEGGRAALEEERRLAYVGLTR 687 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 A + + SN + + V +++ + Sbjct: 688 AKRRCHLWFVSNRRIHGLWQSTMPSRFLDELPPAHVEVAEVETSYGGYGRGGYGQSR 744 >gi|157151050|ref|YP_001450617.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str. Challis substr. CH1] gi|157075844|gb|ABV10527.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str. Challis substr. CH1] Length = 762 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 94/592 (15%), Positives = 186/592 (31%), Gaps = 123/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + +L + ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDFTVTKLVEAVLEKTGYIEALATQATLESQARIENIEEFLSVTKN 515 Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 +++ L +++L T ++ V +MT+H AKGLE PVVFL Sbjct: 516 FDESPDNPADESGLDKLSRFLNDLALIADTDDGDMESSE--VTLMTLHAAKGLEFPVVFL 573 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 V VF + Sbjct: 574 VGMEENVFPLSRASEDEDELEEERRL---------------------------------- 599 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ K+N + + + + + Sbjct: 600 AYVGITRAEKILYLTNANSRMLYGKTNFNHPTRFLREISSDLLNYQGLARPA 651 >gi|255994849|ref|ZP_05427984.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989] gi|255993562|gb|EEU03651.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989] Length = 753 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 100/561 (17%), Positives = 180/561 (32%), Gaps = 122/561 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 +++ + Y+ K N +DF+DL++NT L K I + +I++DE QD Sbjct: 180 QISQQVYEAYQNVLKANNAMDFDDLLLNTVILFSKYPD---ILKIYAERFKYIMVDEYQD 236 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 TS +Q+E+I L + + VGD+ Q IY + GA + +L +++ Sbjct: 237 TSSLQFELINKLAH----------VHKNICVVGDDDQCIYEWRGATIENILSFEKVY--- 283 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + II+L ++RST +IL V S + Sbjct: 284 -----KGTKIIKLERNYRSTKNILDAAHAVISNNSKRKEKK------------------- 319 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW V S+ +A A I I + + Sbjct: 320 --LWTGSVEGEKI--------------SIEVYENAHAEAEFIVDKIRQAVAEEGK----- 358 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KDI +L R + L + + + + I D++A R Sbjct: 359 ----TYKDIAILYRNNSQSRLFEEALK----RWDVPYRILSGIRFYERSEIVDMLAYLRV 410 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISK 480 + DD++F+ + P + + K+ R +++ E + + + Sbjct: 411 TENPFDDIAFLRCINEPARGLGKKALEKVASFARERGISLFAGLLMDECLAELSAAARRG 470 Query: 481 FQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNF 535 + IK I + + + I+ ++ E + + E + Sbjct: 471 AEEFIKMIKHAQDMLLDENTRISNVLKYIIETSGYERKLKLADTLESDAKLENIYELVAS 530 Query: 536 TLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 E +S L + E+ + V +MT+H++KGLE VVF+ Sbjct: 531 VADREGSSAGDDEKLTLSAFLEEIALISDVDNHD--ETADAVVLMTLHSSKGLEFNVVFI 588 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +F EE RL Sbjct: 589 PGMEEGIFPSGQGDDNPG----------------------------------KIEEERRL 614 Query: 651 LYVGMTRASDQLIICKHSNTS 671 YVG TRA ++L + Sbjct: 615 CYVGFTRAKEELFLSAAKWRR 635 >gi|85711578|ref|ZP_01042636.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145] gi|85694730|gb|EAQ32670.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145] Length = 724 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 114/690 (16%), Positives = 227/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L +S Sbjct: 30 GAGSGKTRVLVHRIAWLIQERRYSPYSILAVTFTNKAASEMRGRVEQLLGSSVRNMWIGT 89 Query: 66 FSLLS---------SFFLTQKFTPQKNIITQEINKKS------PDLKEKLKKSQDEFIKI 110 F L+ L Q F + Q + K+ + + K++Q Sbjct: 90 FHGLAHRLLRAHYMDVGLPQNFQILDSDDQQRLVKRLIKSMNLDEKRWPAKQAQWYINGK 149 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + ++ + K + Y+E+ + ++DF +L++ ++LL+ +R Sbjct: 150 KDEGLRAQHIETFDPTEQTLKQIYEAYQESCDRAGLVDFAELLLRAHELLRDN---KTVR 206 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + HIL+DE QDT+ IQ+ IR L+ + VGD+ QSIY + Sbjct: 207 EHYQKRFRHILVDEFQDTNSIQYAWIRLLSGQD----------NIVTIVGDDDQSIYGWR 256 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + I L ++RST +IL + V + + G Sbjct: 257 GARVENIQQFLDDYPA--------AMTIRLEQNYRSTGNILRAANSVIANNSDRLGK--- 305 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 LW + S + F+ + + AR I Sbjct: 306 ------------------DLW-------TEGNEGEPISLYAAFNEMDE-------ARYIV 333 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +D+ +L R + ++ ++ Sbjct: 334 GRIEEWRDQGGAL----------QDVALLYRSNAQSRVLEEAL----LHARLPYRIYGGL 379 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469 + IKD +A R + +++DD + ++ +P + I R + +++++ Sbjct: 380 RFFERQEIKDALAYLRLVSNRDDDAAIERVINTPTRGIGNRTLDIIRQTAREQKKSLWQA 439 Query: 470 ------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 ++ A + I+ I+ + + ++ + + G Sbjct: 440 ATQLVDEKQLAGRARNAVASFIELINTTDDETEDFTLGRLSNEVISRSGLLAMYEAEKGE 499 Query: 524 EVI---DVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + + L E ++ Q+ L L + L + + V++MT+H Sbjct: 500 KAETRVENLKELVSACENFTQDETEEDLTPLNAFLAHAALEAGEEQADEYQDAVQLMTLH 559 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+ VF + Sbjct: 560 SAKGLEFPMVFMTGVEEGVFPSQQSMDEPG------------------------------ 589 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 EE RL YVGMTRA +L+I Sbjct: 590 ----RLEEERRLCYVGMTRAMQKLVITYAE 615 >gi|327402801|ref|YP_004343639.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] gi|327318309|gb|AEA42801.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] Length = 771 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 95/558 (17%), Positives = 176/558 (31%), Gaps = 121/558 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y K +DF+DL+ TN LL+ + + +IL+DE QDT+ Sbjct: 174 LARIYKAYAVRCFKAGAMDFDDLLYQTNILLRDFPD---VLSYYQHKFKYILVDEYQDTN 230 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +++ L F + VGD+ QSIYSF GA + +L + Sbjct: 231 FAQYLIVKKLAAVFE----------NICVVGDDAQSIYSFRGANIQNILNFRNDYP---- 276 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + + +L ++RST +I+ + + S + I+ G Sbjct: 277 ----DYKLYKLEQNYRSTQNIVEAANSIISKNK----------EQIQKNVWTNNDKGN-- 320 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L + + D++ R IA I F + Sbjct: 321 LIRVIRAMTDNEEG-----------------------RIIANKI---------FDVKHQE 348 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 D +L R + + R I IKDL++ R Sbjct: 349 TGDWTDFAILYRTNRQSRAFEEALR----KMNIPYKIYGGLSFYQRKEIKDLLSYFRLTA 404 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCG-------ISKF 481 +Q+D+ + ++ P + I H +++ I +F K Sbjct: 405 NQKDEEALKRVINYPKRGIGKTSWENIIIAANHHDVAIWDIISEFGKYPVSIPSATKQKI 464 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-----EVIDVLDEFLNFT 536 + I Q + + I + ++ S E ++E L Sbjct: 465 SEFVIMIQSFTAQLQSQNGYQLAQTIAKSSGILKELYSEKDKGPEEVERYQNIEELLAAI 524 Query: 537 LRNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 + +L + + ++ + N++ +MT+H++KGLE V+LV Sbjct: 525 KEFTVQRGEEDPGTLADFMMDVALLTDAD-NETEEDKNKISLMTIHSSKGLEFKHVYLVG 583 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F + + ++ EE RL Y Sbjct: 584 LEENLFPSQ----------------------------------LSINSRTELEEERRLFY 609 Query: 653 VGMTRASDQLIICKHSNT 670 V +TRA I ++ Sbjct: 610 VAVTRAEKNCTISYAASR 627 >gi|260770702|ref|ZP_05879632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972] gi|260614283|gb|EEX39472.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972] gi|315178541|gb|ADT85455.1| DNA-dependent helicase II [Vibrio furnissii NCTC 11218] Length = 724 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 99/569 (17%), Positives = 186/569 (32%), Gaps = 116/569 (20%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + L Y++A + ++DF ++++ +LL+ IR Sbjct: 153 EGLRPAHIDAYRDPVTQTYLQLYTAYQDACDRAGLVDFAEILLRALELLRDN---KHIRE 209 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 HIL+DE QDT+ IQ+ +R + + VGD+ QSIY + G Sbjct: 210 HYQARFKHILVDEFQDTNNIQYAWLRMMAG----------PQSHVMIVGDDDQSIYGWRG 259 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + + + I L ++RST IL + + + G Sbjct: 260 AKVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---- 307 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW S S ++ L + AR + Sbjct: 308 -----------------ELW-------TDGNVGDPISVYSAYNELDE-------ARFVVG 336 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 I I D +L R + ++ ++ Sbjct: 337 KIKEWQDKGGIL----------NDCAILYRNNAQSRVLEEAL----LQTGLAYRIYGGMR 382 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYI 470 + IKD ++ R + ++ DD +F ++ +P + + + R T+++ Sbjct: 383 FFERQEIKDALSYLRLMNNRNDDTAFERVVNTPTRGLGDKTLDTVRFAARDRGCTLWQAS 442 Query: 471 QKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 + S ++ I+ L + S H ++ + + G + Sbjct: 443 VQLLEEKVLTGRAASALSRFVELINALEDDSAEMSLHSQTDHVIKTSGLFEMYQQEKGEK 502 Query: 525 ---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 I+ L+E + T + E+ + L + L + + V++MT+H+ Sbjct: 503 SKARIENLEELVTATRQFEKPEEADEMTMLTAFLTHAALEAGEGQADEFDDAVQLMTLHS 562 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF+V +F + Sbjct: 563 AKGLEFPLVFMVGVEEGMFPSQMS----------------------------------AE 588 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 589 EAGRLEEERRLCYVGMTRAMQKLYITYAE 617 >gi|265753474|ref|ZP_06088829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235188|gb|EEZ20712.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 796 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 98/680 (14%), Positives = 206/680 (30%), Gaps = 126/680 (18%) Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 A + + + Y E +++ +DF+DL++ T L + I K ++ ++L+DE Sbjct: 169 AKVPATRDIYRQYWERCRQSDAMDFDDLLLYTYMLFRDHPE---ICRKYAEQFRYVLVDE 225 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ Q ++ LT++ + + VGD+ QSIYSF GA +L+ ++ Sbjct: 226 YQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKFTQLY 275 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + + +L ++RST I+ + + S Sbjct: 276 --------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIKKEVFS------------- 314 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 + + + + + + +A I + + Sbjct: 315 ---------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSREH--- 349 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 D +L R + + R + IKD+++ Sbjct: 350 ------YSYNDFAILYRTNAQSRIFEEALR----KRSLPYKIYGGLSFYQRKEIKDVISY 399 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQKFANC 476 R ++ D+ +F +L P + + K I +++ Y Sbjct: 400 FRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLNINKG 459 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +K Q + + I + ++ +I+ + E + ++E + Sbjct: 460 MHTKLQGFRELVKSFIVEIPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENIEELI 519 Query: 534 N------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 N E N L + +SE+ + ++ +MT+H+AKGLE Sbjct: 520 NGMHDFCAIREEEGNENILLTDFLSEVSLLTDQD-NEKEEDAEKIILMTIHSAKGLEFKN 578 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF+V +F + EE Sbjct: 579 VFVVGLEENLFPSALSLNSY----------------------------------KELEEE 604 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA + + + K + + D + ++ + + + Sbjct: 605 RRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMARRIDE 664 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTK 765 + + + L E + P + PS Sbjct: 665 RASRFCREQNERASRFLFDESASQPSYGRSSSNLSGGQKSFFIGERPKAEIIRPSVPRNL 724 Query: 766 GKTNLESLLSDNQTFNRGLI 785 K L ++ + G + Sbjct: 725 TKVGLATVSKPSAA---GTL 741 >gi|160945249|ref|ZP_02092475.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii M21/2] gi|158442980|gb|EDP19985.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii M21/2] Length = 892 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 104/646 (16%), Positives = 197/646 (30%), Gaps = 121/646 (18%) Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 I+ K +K + + ++ + S + A YE+ K+ Sbjct: 187 SIDDKFLPIKAAINQMSRWKDQLVSPEQALADHARDVKSTQ-TARIYAAYEKKLKEAGAF 245 Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 DF+DLI T LL + +R + ++L+DE QDTS+ Q+ ++ LT Sbjct: 246 DFDDLIYQTVQLLAEHPD---VREFYQNKYRYLLVDEYQDTSVAQFRLVSLLTG------ 296 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 R + VGD+ QSIY F GA + +L +++ I L ++RST Sbjct: 297 ----PERNICVVGDDDQSIYRFRGATIENILNFEKLYP--------GTKTIRLEQNYRST 344 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 ++IL + V +G + LW + Sbjct: 345 SNILNAANCVIQHNTERKGKT---------------------LW-------TDNGEGDKV 376 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 + + + A IA I + D +L R + Sbjct: 377 QVYTAENEQDE-------ASHIADIIGQHLKEGG----------HLADHAILYRMNAQSA 419 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 I I D +KD+ + + + DD+ ++ P Sbjct: 420 PIESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARK 475 Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPH 501 + I + I A+ + L + Sbjct: 476 IGATTVDVIADLAGQQGVSMLDIISHADQYAKLSRAVMPLLKFWQIYQRLQDSLATRTLD 535 Query: 502 DFFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISE 553 +F + ++ + + + + L + +N + ++L+ + + Sbjct: 536 EFASDVIELTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQHGEEATLEGYLED 595 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + + ++V +MT+H+AKGLE P VFL+ VF + K Sbjct: 596 IALISDIDSYN--ESSDQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSK--------- 644 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 ++ EE RL YVG+TRA +L I Sbjct: 645 -------------------------YSEADLEEERRLAYVGITRAKKELYISNSVTRMLY 679 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 ++ + + + + + + E+S P Sbjct: 680 GRTQRNEPSRFLREIEPEYIEETRSPVLEQRSHMGGWGSEYSDTVP 725 >gi|119964268|ref|YP_946829.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1] gi|119951127|gb|ABM10038.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1] Length = 848 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 119/783 (15%), Positives = 236/783 (30%), Gaps = 136/783 (17%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + +S + + + L + Sbjct: 132 AAAEMRERIEALVGARAKGMWISTFHSSCVRILRREAANV-----GLNSNFSIYDSADSL 186 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+K + I K LK +L D + Sbjct: 187 RLITLVAKNLDLDPKK-FAPKAIQHKISALKNEL----------IDADSYVSSANHNDPF 235 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + ++ +DF+DLI T + + + + H+L+DE Q Sbjct: 236 EQAVAEVFKGYTQRLRQANAMDFDDLIAETVYMFRAFPA---LAESYRRRFRHVLVDEYQ 292 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R + +G +T P L VGD QSIY+F GA+ + ++ + Sbjct: 293 DTNHAQYALVREIVG---LGTDTGVEPSELTVVGDSDQSIYAFRGADIRNIVEFEADYPN 349 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I+L ++RST +IL+ + V S N Q Sbjct: 350 --------ARTIKLEQNYRSTQNILSAANSVISRNPNRQEKR------------------ 383 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ + ++ + + A+ IA I + + Sbjct: 384 ---LW-------TAEGDGEKIVGYVGENEHDE-------AQFIAKEIDRLQDEE------ 420 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++ D+ + R + I + + + IKD +A R Sbjct: 421 ---GLRPGDVAIFYRTNAQSRSIEDVL----VRVGLPYKVVGGTRFYERKEIKDALAYLR 473 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479 +++ +DD++ +L P + + T + + A+ + Sbjct: 474 VLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAALAERERTSFMTAARRADQAPGMATRSVN 533 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 +K + +L +A +L + + ++ L E + Sbjct: 534 AVLGFVKLLDDLAEVASGSGAAAALEAVLEQTGYLAGLRASNDPQDESRVENLAELVAVV 593 Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHN------------EVRIMTVHTAKGL 583 E+++ SL E + ++ + + + V +MT+HTAKGL Sbjct: 594 REYERDNPDGSLGEFLEQVSLVADADQIPDAPGADIDAAVAEAKRMGVVTLMTLHTAKGL 653 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL +F H+ Sbjct: 654 EFPVVFLTGMEHGIFPHQ----------------------------------RSATDPKE 679 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E RL YVG+TRA +L + + S +S + + K+ ++ Sbjct: 680 LAEERRLAYVGLTRARQRLYVTRSEVRSMWGQSQYNPASQFLEEIPSELVEWKREGMSRQ 739 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 A S + + + + + + +P S + Sbjct: 740 AAGGWGSAPIGSNRYGGSFWGAGTSRGAAASPTAGFDADVPAAVVRNRVQPQKEVISVVV 799 Query: 764 TKG 766 Sbjct: 800 GDK 802 >gi|195978018|ref|YP_002123262.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974723|gb|ACG62249.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 765 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 124/780 (15%), Positives = 241/780 (30%), Gaps = 135/780 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--------- 56 G ++ L ++ + + V+ N + ++A L A Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERALALSPATKDTLIATF 87 Query: 57 ----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIR 111 + E + F Q+ ++ + + + D K+ ++ + Sbjct: 88 HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVKALNLDPKKWSERSILATISNAK 147 Query: 112 DRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + ++ + L Y+E +++ +DF+DLI+ T L + + Sbjct: 148 NDLLDERAYELGASDLYSQTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPD---V 204 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 Q +I +DE QDT+ Q++++ L F + + VGD QSIY + Sbjct: 205 LAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRF----------KNICVVGDADQSIYGW 254 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + +L ++ ++ L ++RST IL ++V + + Sbjct: 255 RGADMQNILDFEKDYP--------DARVVLLEENYRSTKKILQAANEVIQHNRHRRPKK- 305 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + +Q + D + A + Sbjct: 306 --------------------LW-------TQNADGEQIVYYRANDERDE-------AVFV 331 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A TISNM + KD VL R + I I Sbjct: 332 ASTISNM---------CLELGKSFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGG 378 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 I+D++A + + D++SF ++ P + K+ + +++ E Sbjct: 379 TKFYSRKEIRDVIAYLTVVANPSDNISFERIVNEPKRGVGPGTLDKLRQFAYGQEQSLLE 438 Query: 469 YIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 + + +L S +L + Sbjct: 439 AASSLEQSPLKGKAAQAMLALASLLSDLRADLDRLSITALAEALLEKSGYLDMLRVQNTL 498 Query: 524 E---VIDVLDEFLNFTLRNE------QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVR 573 E I+ ++EFL+ T + Q + + L L + +A EV Sbjct: 499 ESQARIENIEEFLSVTKSFDDVSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVT 558 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+H AKGLE PVVFL+ VF Sbjct: 559 LMTLHAAKGLEFPVVFLIGMEEGVFP---------------------------------- 584 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + EE RL YVG+TRA + L + + + KS+ + + N Sbjct: 585 LARAAEDQDELEEERRLAYVGITRAEECLFLTNANTRTLFGKSSYNRPTRFLKEMSENLL 644 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + + + + + L ++ M + +P+ N Sbjct: 645 SFQGLARPAHASFGVTFSQQGQRQFCAGMSLSEAIQSRKSMAQPARAASKPTPLPFGPNA 704 >gi|212692987|ref|ZP_03301115.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855] gi|237725615|ref|ZP_04556096.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212664456|gb|EEB25028.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855] gi|229436302|gb|EEO46379.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 796 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 98/680 (14%), Positives = 206/680 (30%), Gaps = 126/680 (18%) Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 A + + + Y E +++ +DF+DL++ T L + I K ++ ++L+DE Sbjct: 169 AKVPATRDIYRQYWERCRQSDAMDFDDLLLYTYMLFRDHPE---ICRKYAEQFRYVLVDE 225 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ Q ++ LT++ + + VGD+ QSIYSF GA +L+ ++ Sbjct: 226 YQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKFTQLY 275 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + + +L ++RST I+ + + S Sbjct: 276 --------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIKKEVFS------------- 314 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 + + + + + + +A I + + Sbjct: 315 ---------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSREH--- 349 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 D +L R + + R + IKD+++ Sbjct: 350 ------YSYNDFAILYRTNAQSRIFEEALR----KRSLPYKIYGGLSFYQRKEIKDVISY 399 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQKFANC 476 R ++ D+ +F +L P + + K I +++ Y Sbjct: 400 FRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLNINKG 459 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +K Q + + I + ++ +I+ + E + ++E + Sbjct: 460 MHTKLQGFRELVKSFIVEIPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENIEELI 519 Query: 534 N------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 N E N L + +SE+ + ++ +MT+H+AKGLE Sbjct: 520 NGMHDFCAIREEEGNENILLTDFLSEVSLLTDQD-NEKEEDAEKITLMTIHSAKGLEFKN 578 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF+V +F + EE Sbjct: 579 VFVVGLEENLFPSALSLNSY----------------------------------KELEEE 604 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA + + + K + + D + ++ + + + Sbjct: 605 RRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMARRIDE 664 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTK 765 + + + L E + P + PS Sbjct: 665 RASRFCREQNERASRFLFDESASQPSYGRSSSNLSGGQKSFFVGERPKAEIIRPSVPRNL 724 Query: 766 GKTNLESLLSDNQTFNRGLI 785 K L ++ + G + Sbjct: 725 TKVGLATVSKPSAA---GTL 741 >gi|114564558|ref|YP_752072.1| DNA-dependent helicase II [Shewanella frigidimarina NCIMB 400] gi|114335851|gb|ABI73233.1| ATP-dependent DNA helicase UvrD [Shewanella frigidimarina NCIMB 400] Length = 727 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 101/579 (17%), Positives = 194/579 (33%), Gaps = 116/579 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + + HIL+DE QDT+ IQ Sbjct: 173 IYKVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFRHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRVLAGN----------TANVMIVGDDDQSIYGWRGAQIENLHRFLKDF-------- 271 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RSTA+IL + V + + G +LW Sbjct: 272 SGATTIRLEQNYRSTANILNASNAVIANNPDRLGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ + + A+ I IS+ Sbjct: 310 ------TEDKDGEPISVYCAFNEMDE-------AKFIVGRISDWHEKGGSL--------- 347 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + +L R + ++ ++ + IKD M R I +Q Sbjct: 348 -SECAILYRSNAQSRVLEEAF----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLINNQN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + I T R T+++ A + + Sbjct: 403 DDAAFERVVNTPARGIGDRTLDIIRSTARQHELTLWQACVSLIEEKVLAGRAANAINGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 + I + + ++ R + + G + + L+E + E Sbjct: 463 ELIIAMRTDTADMLLYRMADDVIDRSGLRTMYEAEKGEKAQARIENLNELVTAARSFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + A + V++MT+H+AKGLE P+VF+ +F Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K +E RL YVGMTRA Sbjct: 583 KMALDEG----------------------------------DRLDEERRLCYVGMTRAMQ 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L I + + + + + + +I+ Sbjct: 609 KLYISYAESRRIYGREDYASPSRFINEIPEKFVEQIRIR 647 >gi|313632856|gb|EFR99807.1| ATP-dependent DNA helicase PcrA [Listeria seeligeri FSL N1-067] Length = 545 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 101/565 (17%), Positives = 185/565 (32%), Gaps = 115/565 (20%) Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 LDF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 1 ALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF-- 55 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 + L VGD QSIY + GA+ ++ ++ I L ++R Sbjct: 56 --------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEENYR 99 Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 ST IL ++V N + + LW S + Sbjct: 100 STKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAEGK 131 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385 + + + A + I + + D +L R Sbjct: 132 KIFYHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTNAQ 175 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + ++ ++ D IKD++A R I + EDD+S ++ P Sbjct: 176 SRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINVPK 231 Query: 446 FNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCS 499 + K+ +++E + + + + F S Sbjct: 232 RGVGPGTLEKLNNVATAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDFLS 291 Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELE 555 + IL R + E + +DEFL+ T E+ +L +++L Sbjct: 292 VTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENEDKTLIAFLTDLA 351 Query: 556 QYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 352 LVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS------------ 399 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 ++ EE RL YVG+TRA ++L + + Sbjct: 400 ----------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLY 437 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKI 698 + + + + + + Sbjct: 438 GRPSSNQESRFIGEIPRDLLELANE 462 >gi|328945990|gb|EGG40137.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1087] Length = 762 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 97/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLIYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + D +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 ++ + S L +L L + +EV +MT+H AKGLE PVVFLV Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLNYQGLARPA 651 >gi|295105534|emb|CBL03078.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii SL3/3] Length = 892 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 104/646 (16%), Positives = 199/646 (30%), Gaps = 121/646 (18%) Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 I+ K +K + + ++ + S + A YE+ K+ Sbjct: 187 SIDDKFLPIKAAINQMSRWKDQLVSPEQALADHARDVKSTQ-TARIYAAYEKKLKEAGAF 245 Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 DF+DLI T LL + +R + ++L+DE QDTS+ Q+ ++ LT Sbjct: 246 DFDDLIYQTVQLLAEHPD---VREFYQNKYRYLLVDEYQDTSVAQFRLVSLLTG------ 296 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 R + VGD+ QSIY F GA + +L +++ I L ++RST Sbjct: 297 ----PERNICVVGDDDQSIYRFRGATIENILNFEKLYP--------GTKTIRLEQNYRST 344 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 ++IL + V +G + LW + Sbjct: 345 SNILNAANCVIQHNTERKGKT---------------------LW-------TDNGEGDKV 376 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 + + + A IA I + D +L R + Sbjct: 377 QVYTAENEQDE-------ASHIADVIGQHLKEGG----------HLADHAILYRMNAQSA 419 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 I I D +KD+ + + + DD+ ++ P Sbjct: 420 PIESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARK 475 Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPH 501 + I + I A+ + L + Sbjct: 476 IGATTVDVIADLAGQQGVSMLDIISHADQYAKLSRAVMPLLKFWQIYQRLQDSLATRTLD 535 Query: 502 DFFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISE 553 +F + ++ + + + + L + +N + ++L+ + + Sbjct: 536 EFASDVIELTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQHGEEATLEGYLED 595 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + ++++V +MT+H+AKGLE P VFL+ VF + K Sbjct: 596 IALISDIDSYN--ESNDQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSK--------- 644 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 ++ EE RL YVG+TRA +L I Sbjct: 645 -------------------------YSEADLEEERRLAYVGITRAKKELYISNSVTRMLY 679 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 ++ + + + + + ++ E+S P Sbjct: 680 GRTQRNEPSRFLREIEPEYIEETRSPVLEQRSRMGGWGSEYSDTVP 725 >gi|302524115|ref|ZP_07276457.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4] gi|302433010|gb|EFL04826.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4] Length = 804 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 121/790 (15%), Positives = 232/790 (29%), Gaps = 143/790 (18%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LS 70 + + P ++ NK + E + K+A + ++ +S Sbjct: 66 ERGVHPGEIMAITFTNKAAAEMRERVAALVGKRANAMWVSTFHSMCVRILRREAKTLDMS 125 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLA--SL 127 S F K +IT D K+ + +++ + S A Sbjct: 126 SSFSIYDSDDTKRLITLVARDLDIDPKKYAARTLAVHISNLKNELVDPEQAASKAANDLE 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + A Y+ DF+DLI+ T LL+ + + H+L+DE QD Sbjct: 186 RRVAEVYAEYQRRLSSANAFDFDDLIMRTVSLLQ---AFPDVAEYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R+L + L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYTLVRALAGTEATDTGIEPAE--LCVVGDADQSIYAFRGATIRNIEEFERDFPN- 299 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL+ + V + N + Sbjct: 300 -------AHTILLEQNYRSTQTILSAANAVIARNPNRRAKR------------------- 333 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW DS + + S D A +A I ++ Sbjct: 334 --LW------TDSGDGEKIVGYVSDNDHDE--------AAFVAGEIDSLAEKGE------ 371 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D+ V R + + + + + ++D++A R Sbjct: 372 ---ADYSDVAVFYRTNNQSRVFEEIF----IRLGLPYKVVGGVRFYERREVRDMIAYLRV 424 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK--------FANCGI 478 + + +D +S +L P + + E + + ++ Sbjct: 425 LANPDDTVSLRRILNVPKRGIGDRAEAVVATHAERERISFWAALRDAVDDKVALLNPRSA 484 Query: 479 SKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534 + + EL +A + HD +L R + + ++ L E + Sbjct: 485 KAITGFVTLLDELQEMASSGTEVHDLLEAVLERTGYRAELEESDDPQDASRVENLTELVT 544 Query: 535 FTLRNEQ----------------NSYSSLQELISELEQYPPTIKRAHSANHNE------- 571 + + + L + LE+ + + Sbjct: 545 VAREFAEFTAEVTNDENAELVLDDGVPAPGSLPAFLERVSLVADADSIPSPDGGEEGDGG 604 Query: 572 ---VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 V +MTVHTAKGLE PVVF VF H Sbjct: 605 AGVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHMRALGDP--------------------- 643 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 + E RL YV +TRA +L + + S + + + Sbjct: 644 -------------AELAEERRLAYVAITRARQRLYVSRALTRSAWGQPQMNPASRFLDEL 690 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + ++++ ++ + + S+ T R + K + Sbjct: 691 PPDLVDWRRLEPSSPGFGNFGSSSGSSSGPRAATTWGRRSSSSSTSSSSPFGKAWKDTVA 750 Query: 749 NDINEPYILN 758 ++ ++ Sbjct: 751 LKLDVGDRVS 760 >gi|218289369|ref|ZP_03493603.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius LAA1] gi|218240475|gb|EED07656.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius LAA1] Length = 757 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 126/767 (16%), Positives = 240/767 (31%), Gaps = 146/767 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + ++ + +V + ++ + L + Sbjct: 34 GAGSGKTSVLTRRIVYLIAERRVPPWAILAITFTNKAAREMEERIERLVGPVASDIWTST 93 Query: 66 FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106 F + + L + ++ + I+ + + + L Sbjct: 94 FHAMCARILRRDIHHLGYTSAFTVLDAADQVSLVRRLMQEMNIDVRKFEPRAVLHAISQH 153 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++R + S + + YE ++N LDF+DL++ T +L +K Sbjct: 154 KNELRSAEKALDLAGSPYD--KMVGDVYLAYERRLRENQALDFDDLLVKTVELFRK---V 208 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + +HI +DE QDT+ Q+ +++ L E R L VGD QSI Sbjct: 209 PDVLAYYQHRFSHIHVDEYQDTNHAQYVLVKLLAE----------RRRNLCVVGDSDQSI 258 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL + ++V + Sbjct: 259 YGWRGADIRNILEFQRDYP--------DARVIRLEQNYRSTGRILRIANQVIQHNQMRLE 310 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ + + A Sbjct: 311 KN---------------------LWTDRGEGEKAKLFVAPD--------------ERVEA 335 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I+ M+ + +D+ +L R + ++ I Sbjct: 336 DLVADEIARMVADGR----------RYRDVAILYRTNAQSRVLEEAF----LQRGIPYRI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 + +KD++A R I + DD+SF+ ++ P + + K+ R + Sbjct: 382 YGGLRFYERREVKDVIAYLRLIANPNDDVSFLRVVNVPKRGIGDTTLEKLADYARQRGTS 441 Query: 466 VYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E A GISK Q ++ I L F D +L R+ + Sbjct: 442 LFEAALHAAEAGISKKAASALQSFVELIQTLQLQRAFLPLTDLTDELLERSGYREALRAE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHS-------AN 568 E + LDEFL+ T ++N + L L + Sbjct: 502 RSLEAENRLENLDEFLSLTREFDENGVPEGEMGALEQFLTHVALVSDADLPGGRPGRRED 561 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 +EV +MT+H AKGLE PVVFLV VF H+ Sbjct: 562 LDEVSMMTLHAAKGLEFPVVFLVGLEEGVFPHRRALDGGEELEEERRL------------ 609 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMV 685 YVG+TRA ++L + + + + + Sbjct: 610 ----------------------CYVGITRAMERLYLTTCRSRMLFGERRSFTPSRFLSEM 647 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + + +D H +T ++ + Sbjct: 648 PAADIERVGEEDAAFGRGGWRDSHAGVRAPAHVVADTASAPRLSVPR 694 >gi|256847800|ref|ZP_05553245.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis 101-4-CHN] gi|256715489|gb|EEU30465.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis 101-4-CHN] Length = 759 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 125/774 (16%), Positives = 229/774 (29%), Gaps = 148/774 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V + + ++ L S Sbjct: 28 GAGSGKTRVLTHRVAYLIEEKNVLPWHILAITFTNKAAREMKERIGKLLGDSANDIWVST 87 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106 F L + F Q+ ++ + I+ K D ++ L + Sbjct: 88 FHALCVRILRRDIDKLGFNTAFTIADPGEQRTLMKRICAELNIDTKKFDPRQILSAISNA 147 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + K + + Y+ + N LDF+DLI+ T L K Sbjct: 148 KNAMMTPDEYEK--RYQDPFRKMVGRAYRLYQRELETNQTLDFDDLIMKTIQLFKAD--- 202 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 A + +I +DE QDT+ Q+E++ L + + L VGD QSI Sbjct: 203 AETLQYYQDKFQYIHVDEYQDTNDAQYELVHMLADGY----------HNLCVVGDADQSI 252 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA +L ++ + I L ++RST IL ++V + + + Sbjct: 253 YGWRGANMNNILNFEKDYPN--------ATTIMLEQNYRSTQTILNAANEVIANNQKRKD 304 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW + S+ S A Sbjct: 305 KN---------------------LW-------TENGQGDKISYYRA-------QSEHDEA 329 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I + + D VL R + +I + Sbjct: 330 YYVVKKIQEQMRE---------HGYKYGDFAVLYRTNAQSRIIEETF----LKSSVPYTM 376 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 D I+D++A + + D +SF ++ +P I K+ + Sbjct: 377 VGGHKFYDRKEIRDILAYLTLVANPNDSMSFERVVNTPKRGIGPTSIEKLRDFAATNNMS 436 Query: 466 VYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + Q + + +K + + + A S + LIL R+ Sbjct: 437 LLTATQNIMLANQISTSVRNKLDGFAQEMRTIQDQADELSITELTDLILERTGYRKALQD 496 Query: 520 R-----FGNEVIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQYPPTIKRAHSA 567 +D LDEF + T ++N+ L +++L P Sbjct: 497 EAEKSLQAQSRLDNLDEFKSVTQEFDKNNADDAANAQEKLTRFLTDLALVSPQD--DIED 554 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 N V +MT+H AKGLE PVVFL+ +F Sbjct: 555 QENTVTLMTLHAAKGLEFPVVFLIGMEQSIFPM--------------------------- 587 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDM 684 +EE RL YVG+TRA +L + + +++ + + D Sbjct: 588 -------ARALNNAEEEEEERRLAYVGITRAQKKLFLTNAMSRVLYGRIQRNPESEFVDE 640 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 + D + + + I+ A +T Sbjct: 641 IDDKLLDFDSQQSIRTPFGNGGRNNYAQRAATATTYGASRRSHSYASAGKRVAP 694 >gi|197334387|ref|YP_002155339.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11] gi|197315877|gb|ACH65324.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11] Length = 1208 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 150/916 (16%), Positives = 301/916 (32%), Gaps = 155/916 (16%) Query: 86 TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145 T++ + + + + ++I+ + + + ++AK++ Sbjct: 306 TKKGEAPEHAVFKLIDDFLAQPLEIKQPLLSLAIHQCRKTL-----------QQAKEQKN 354 Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 L F+DL+ + + +A + KI ++ LIDE QDT +Q+ + +L +D Sbjct: 355 WLSFDDLLTQLSQA-TENQDNALLLEKIREQYPVALIDEFQDTDPLQYSIFSTLYQD--- 410 Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 LF +GD KQ+IY+F GA+ ++ +R T L ++R Sbjct: 411 -----QPQCGLFMIGDPKQAIYAFRGADIFTYIQARRQVADHYT----------LDTNWR 455 Query: 266 STADILTVVDKVFSIPENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 STAD+++ V+++F + +D +++ Q D+Q P Sbjct: 456 STADMVSSVNRIFEHGKQPFLYDDDIPFYPVKYNPVNAEQKSW---------ALDNQTQP 506 Query: 325 QQESWTSYF---DSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDI 376 W + + + S ++A A I ++ G+ + + KK+ I+A DI Sbjct: 507 AMTFWLLESKDGNPVNKTSYQRVMAESTAAQIQTILTGAQQGSAYLQNGEKKQAIKAGDI 566 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 VLVR K+ L+ L SV ++R + KD++ L + ++ D + Sbjct: 567 AVLVRTGKEGKLVRE---ALSKQGIASVYLSNRDSVFSSPLAKDVLRLLQAAMTPTDARA 623 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496 L S LF ++ D + + + ++ + Q Sbjct: 624 VRSALASSLFAYTADQLHQFNVDEMQ------------------WEQAVNEFRAYRKHWQ 665 Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSY---SSLQE 549 I+ + ++ + G E + E L T + + Y L + Sbjct: 666 QRGIMPMLHQIITQQGISERLLVENGGERQLTDLLHIGELLQQTSQTLDSDYGLLRWLSD 725 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 ISEL + N V+I+T+H +KGLE +VFL S K + Sbjct: 726 SISELNGDSEEQTVRLESERNLVQIVTIHKSKGLEYDLVFLPFVCSYRAIDKKGEVSFYD 785 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHS 668 + S + +K E RL+YV +TRA I Sbjct: 786 EDNRYSVLDLLKEDDSV----------EKAEKERLAEDLRLIYVALTRAVYACYIGMAPI 835 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 KK + + +L + K P+ T E + Sbjct: 836 TKGISKKPPTGVHLSGLGYLIQQADECNVEELKVCLEKLIAGNSPMVIQSPQTTTDELYQ 895 Query: 729 TIKQ---------LMDEQKIPKKLFS---------PIKNDINEPYILNPSTIDTKGKTNL 770 ++ L++ K + S + E L+ + + K L Sbjct: 896 EVQDEHIELHANKLIEPVKSNWWMTSYSGLVKQGNHHNDASLELINLDIDSAEDKDDKEL 955 Query: 771 ESLLSD-----NQTFNRGLIIHKLLQVIFTLPEHKRKN---FITSYCTKNAKLWPAKEYK 822 + + G +H L + + + I K + A+ + Sbjct: 956 DLEPERTIFTFPRGARAGTFLHSLFEEVEFTQPITSEENTQIIIKLLEKE--NYDAEWLE 1013 Query: 823 NLLLSITRLLENP------MMTTAMSCDSYSEVSVSGKINCPKKDII------------- 863 + + + R+L+ P + + E+ I ++ Sbjct: 1014 VVRIMMQRVLDCPLDGENLRLASKGPTQRLVEMEFLLPIELLNSSLVNKTIAKHDEVSAR 1073 Query: 864 ------------ISGRIDQISISQQNIFIFEYKTHHH--VPQE-------IEHIPYTHIA 902 + G ID + + ++ ++K++H P + + + Sbjct: 1074 AGELGFSTVSGMLKGFIDLVFEHEGKYYVLDWKSNHLGDSPDDYGGDALVEAMRDHRYDF 1133 Query: 903 QLSIYEKILKDSYPNK 918 Q +Y L ++ Sbjct: 1134 QYQLYALALHRFLKSR 1149 >gi|330470059|ref|YP_004407802.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032] gi|328813030|gb|AEB47202.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032] Length = 797 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 112/713 (15%), Positives = 209/713 (29%), Gaps = 137/713 (19%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + K + P S + + + L+ ++ Sbjct: 92 AAGEMKERVAKLVGPRARLMWVSTFHSACVRILRAEHEH-----AGLKSTFSIYDADDSR 146 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+ P K + + + +LK +L + F + A Sbjct: 147 RLMQMVARELDLDP-KRYPARGLAAQVSNLKNELVDP--------EAFAARASGPNERAL 197 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+DLI+ T LL+ + + H+L+DE Q Sbjct: 198 ----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAETYRRRFRHVLVDEYQ 250 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ +I+ L + L VGD QSIY+F GA + +L +R Sbjct: 251 DTNHAQYVLIKELVSGTEGLEPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF-- 303 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I L ++RST IL + V + + S Sbjct: 304 ------ADARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS--------------- 342 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 + + A +A I ++ Sbjct: 343 -------------DAGTGEPIVAYVADTEHAE-------ADWVAREIDRLVDDGET---- 378 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D+ V R + + + + + ++D +A R Sbjct: 379 -----RPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLR 429 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479 +++ +D +S +L +P E + + + A + Sbjct: 430 AVVNDDDTVSLRRILNTPRRGIGERAEACVEALAGRDRISFGAALRRAKDAPGISSRAAN 489 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + + +P + +L + + +D L E ++ Sbjct: 490 GIADFVALLDSARELTVDGTPEEVLEAVLTRSGYLTELEESLDPQDAGRVDNLQELVSVA 549 Query: 537 LRN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 E+ ++L + + L + + V +MT+HTAKGLE P Sbjct: 550 REYTERIESTGEEGERATLAGFLEQVALVADADQVPTDDPDHQGVVTLMTLHTAKGLEFP 609 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VVFL VF H L EE Sbjct: 610 VVFLTGLEDGVFPH----------------------------------LRSLGDTRELEE 635 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 RL YVG+TRA +L + + S + + V + R ++ + Sbjct: 636 ERRLAYVGITRARQRLYLSRAVTRSAWGQPSYNPPSRFVEELPPELVRWERTE 688 >gi|125624253|ref|YP_001032736.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|124493061|emb|CAL98025.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300071034|gb|ADJ60434.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris NZ9000] Length = 758 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 214/700 (30%), Gaps = 145/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53 G ++ L ++ + + V+ N + ++A +L Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSLTPRAQDTLIATF 87 Query: 54 -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEF 107 + + + + + K I+ + + K L + Sbjct: 88 HSMCVRILRRDADHIGYNRNFTIIDPGDQKSLMKRILKEANLDPKKWEPKGLLNAISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D + + + Y++ +K +DF+DLI+ T L + Sbjct: 148 NDLLDETAYEAQITARHPYEMVVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPD-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 206 -VLAYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ K ++ L ++RST IL + V + Sbjct: 255 GWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTILDAANNVIKNNLKRRPK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 +LW + + + + A Sbjct: 307 ---------------------ELW-------TQNDEGDKIVYFRAGNEQEE-------AN 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +++ IS+ + + D VL R + I I Sbjct: 332 KVSEIISSGVRSGR----------SYADYAVLYRTNAQSRTIEDSF----VKSNIPYTMV 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 I+D++A + + D++SF ++ P + K+ ++ Sbjct: 378 AGTKFYSRKEIRDVIAYLNVVANPADNMSFERIVNEPKRGVGPRALEKLRRFAESRNLSL 437 Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + ++ L ++ + + +L + Sbjct: 438 ADSSFDIMLSDIRGKAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERTGYLKALQLMP 497 Query: 522 GNE---VIDVLDEFLNFTLRNEQNS-------------YSSLQELISELEQYPPTIKRAH 565 E I+ ++EFL+ T ++ S + L +L L + + Sbjct: 498 SIENQARIENIEEFLSVTKGFDEKSEVPLDEETGEPIIETGLDKLSRFLNEVSLLSETDA 557 Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 ++V +MT+H AKGLE P+VFL+ +F + Sbjct: 558 YEEESDQVTMMTLHAAKGLEFPIVFLIGMEENIFPLSRVN-------------------- 597 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL YVG+TRA + L + Sbjct: 598 --------------EDIDELEEERRLAYVGITRAEETLYL 623 >gi|311112208|ref|YP_003983430.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931] gi|310943702|gb|ADP39996.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931] Length = 957 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 125/750 (16%), Positives = 217/750 (28%), Gaps = 154/750 (20%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + P + +S + + + A L+ + Sbjct: 174 AAAEMRERIQALIGPRAQHMWISTFHSFCVRVLRREAK-----ALGLKSTFTIYDSADS- 227 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L + + + K + + + LK +L Y + Sbjct: 228 QRLLTLIIKELNLDTKKFAPKAVGHRISALKNELVS-----------AEEYSAAAANNPW 276 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + + LDF+DLI T LLKK I ++ HIL+DE Q Sbjct: 277 EKTIAQIYTVYTQRLRAANSLDFDDLIGKTVFLLKKFPE---IANYYRRKFRHILVDEYQ 333 Query: 187 DTSLIQWEVIRSLTEDFFVG-------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 DT+ Q+ ++R L G P L VGD QSIY+F GA+ + + Sbjct: 334 DTNHAQYALVRELVGAHPQGNAREQGPYPDAPPPGELTVVGDSDQSIYAFRGADIRNITD 393 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + II L ++RST +IL+ + V N + Sbjct: 394 FESDYPN--------AHIILLEQNYRSTQNILSAANAVIERNPNRRPKK----------- 434 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 LW + S AR IA I + Sbjct: 435 ----------LWTASGEGTKIVGYVAE--------------SEHAEARYIAQEIDRLADE 470 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 I+ D+ + R + L + + IK Sbjct: 471 ---------HGIKPSDVAIFYRTNAQSR----ALEELLMRAGLPYRVVGGTRFYERKEIK 517 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQKFANCG- 477 D +A R + + +DD+S +L P + + + + + A Sbjct: 518 DALAYLRALTNPDDDVSVRRILNEPKRGIGAKSETVVADYASAQRISFFAAARAAAAEPG 577 Query: 478 ---------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + K+ +K + +L IA+ S +L + Sbjct: 578 SVPGLGAAAVKKYAEFVKLMDDLAQIARTESAATTLEAVLEQSGYLAALRESKDIQDESR 637 Query: 526 IDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH--------------- 569 ++ L E L+ + E + + L++ + + Sbjct: 638 VENLSELLDAMVEFEAENPGADLEQFLEHVSLVADADSIPSRGASADGQTPSAAQIAAEA 697 Query: 570 ------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + +MT+HTAKGLE PVVFL +F H+ Sbjct: 698 AEAKAQGMITLMTLHTAKGLEFPVVFLTGLEHGLFPHQRALT------------------ 739 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 + E RL YVG+TRA +L + + + KS Sbjct: 740 ----------------DEGEMSEERRLAYVGLTRAMQRLYVTRSETRTMWGKSQFNPPSP 783 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 + + +++ AY Sbjct: 784 FLEEIPEELIEWRRLGGFAGFGASGMGAYA 813 >gi|296314732|ref|ZP_06864673.1| DNA helicase II [Neisseria polysaccharea ATCC 43768] gi|296838466|gb|EFH22404.1| DNA helicase II [Neisseria polysaccharea ATCC 43768] Length = 735 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 99/550 (18%), Positives = 190/550 (34%), Gaps = 120/550 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +ILT + V + G + Sbjct: 280 ----VKLEQNYRSVGNILTAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D A+ I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + +K +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRNGIPYKIYGGLRFYERQEVKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELI 492 D + + ++ P I + T + T+++ A +K ++ I L Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACN-AGAKATKIAAFVRLIEALR 465 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQ 548 + + IL + + ++ G + +D LDE +N + E +++ +L Sbjct: 466 NQVGQMPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLP 525 Query: 549 E---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + +++ L + A V++MTVH AKGLE VFL F Sbjct: 526 DNISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRF 585 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++ EE RL+YV +TRA Sbjct: 586 PSEMSL----------------------------------AERGGLEEERRLMYVAITRA 611 Query: 659 SDQLIICKHS 668 +L I Sbjct: 612 RKRLYITMAQ 621 >gi|227505537|ref|ZP_03935586.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC 6940] gi|227197834|gb|EEI77882.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC 6940] Length = 1069 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 143/1011 (14%), Positives = 304/1011 (30%), Gaps = 184/1011 (18%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + + + + + V + +S S G+ T + +E Sbjct: 137 VEPTARIIT-DAERYAIAHDVVVNYGGKLSASQSLGHVTDTLLKLAQAMDNGLLDPDEIR 195 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 + F + +K ++ + + +++ L K Q + Sbjct: 196 EH-ARIFTATAYDLEKT--SKNGPEFAKEVQNFLNKQQLRVEYL---------------- 236 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L +E + V+ F + + L + + + Q N +++DE Q Sbjct: 237 -----PLVEALKEEQAARGVITFGEQMAIAAALAESHP---QVGEQQSQRFNVVMLDEYQ 288 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DTS Q ++RSL G ++ AVGD QSIY + GA + + + Sbjct: 289 DTSHAQRVLLRSLFGGVRPG-------VSVTAVGDPMQSIYGWRGATAENLAAFVEDFPQ 341 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 G +L +S+R+ LT+ + V H + G Sbjct: 342 ---ADGSPAPKDQLTISWRNPQQTLTLANDV-----------------AGHLFAETGGPR 381 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 V ++ + ++ + ++ + + + +A + + + Sbjct: 382 PVD---ELSPRDNAPEGEVKLAYFASENEERE---------FVANHLKSQLDA------- 422 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 VLVR K +PLI+ + + L I+DL+A+ Sbjct: 423 -CEEPSRFSAAVLVRTNKQSPLISQALDAV----GVPNEIVGLGGLLWQPEIQDLIAVAT 477 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY----------------- 469 +L +D + + +L P+ D+ ++ ++ + Sbjct: 478 ILLRPQDTNAALRVLTGPMCGLGVKDLKELLARQRNLAGASDESAGRLRWEGGDPVEHLA 537 Query: 470 --------------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503 ++++ G+++ + + + L + S D Sbjct: 538 AQLAELTKEDTSQVLGLADALADLGERERYSAAGLARMEELSAKLRHLRTYSLSKSLSDL 597 Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPP 559 F I R + ++ LD F + SL L+ L E Sbjct: 598 FADIEAMFNIRTEVLANGQLGGTTHLDTFADIVAGF---HGDSLGALLDYLSMAREHEDG 654 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 A V+IMTVH +KGLE V ++ S + + + ++ D + Sbjct: 655 LTPGEVPAVDGRVQIMTVHKSKGLEWKHVCVLHADSSSYKAQAETFLTLVEKAPTDADVI 714 Query: 620 IWIPQSKSRNN---IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 P + R+ + ++++ +EE RL YV MTR L + K+ Sbjct: 715 ELEPDAVKRSAFGKACEAYKESVRQNQREEAARLFYVAMTRTESTLTVTGSGTNRKGGKA 774 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL------------ 724 + + + + + V + + + E + P Sbjct: 775 QKGPYEYLELLREKHSDLVSHWDVPATPEEAEALTTLREGTFPSLRANPDALRGADLVLD 834 Query: 725 -------------------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 E I++ + + P + ++ L+ I Sbjct: 835 AMEELPTLRAGETFELWEQEAGALIEEYAALKAPVVDVELPTELTASDMVSLSSDPIQFA 894 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + N RG H L+ F P + ++N ++ + L Sbjct: 895 RRQRRPVPFKPNAYAKRGTAFHAWLEERFGSP---------ALLSENELPGSDEQPEQDL 945 Query: 826 LSI-TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEY 883 S+ L +P + V + ++ GR+D + I ++ Sbjct: 946 ESLKDAFLNSPWAQ-------RTPEYVEAPFEITVGESVVRGRMDAVFREADGTWLIVDW 998 Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 KT QL++Y + + + +++ YV + F Sbjct: 999 KTGRPPAGAAMRAAE---IQLAVYAEAWRRVHKAENVRAAFFYVRDGYFFE 1046 >gi|307261810|ref|ZP_07543476.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868628|gb|EFN00439.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 732 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 114/582 (19%), Positives = 199/582 (34%), Gaps = 121/582 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R+ T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 A +L I K + + R +++ Sbjct: 609 AKKKLTISYAELRRLYGKEEHHIASRFIAELPEQHIREVRLR 650 >gi|223041651|ref|ZP_03611848.1| DNA helicase II [Actinobacillus minor 202] gi|223017515|gb|EEF15929.1| DNA helicase II [Actinobacillus minor 202] Length = 731 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 115/604 (19%), Positives = 210/604 (34%), Gaps = 117/604 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I T ++LK + + I + Q HILIDE QDT+ I Sbjct: 175 EIYQLYQDACDRAGLLDFAELLIRTYEMLKNQPL---ILQRYQQRFQHILIDEFQDTNNI 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I L + VGD+ QSIY + GA+ + + R + + Sbjct: 232 QYDLIHLLAGQ----------HGKVMIVGDDDQSIYGWRGAQVENIQRFLKDYDQ----- 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ + +N G + G V+++ Sbjct: 277 ---AQTIRLEQNYRSTGHILASANELIANNDNRLGKKLWTE---------SGDGDPVEIY 324 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + AR +A I + Sbjct: 325 CAFNELDE--------------------------ARFVASQIQQWKEDEG---------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 349 SFSECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLISNR 404 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R + T+++ IQ + + S Sbjct: 405 QDDAAFERVINTPPRGIGERTLETIRQLTRTRSITLWQAIQVAIQEEQLSGRAASALLRF 464 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 ++ I+ L + + S D ++ + + G++ ID L+E + T + Sbjct: 465 VELINALDNETEQMSLADQTDFVIRKSGLYEMYKQEKGDKGEVRIDNLEELVTATKQFTP 524 Query: 541 QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L L + L S + + V +MT+H+AKGLE P VF+V +F Sbjct: 525 PDEAEDLTPLTAFLTHASLEAGDAQASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 584 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + +E RL YVG+TRA Sbjct: 585 SGMS-----------------------------------HDEGRLQEERRLAYVGITRAK 609 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 +L I K + + + R +++ + + ++ P Sbjct: 610 KKLTISYAELRRLYGKEERHIPSRFIAELPEEHIREIRLRGNINRAASFASSSPFAKTAP 669 Query: 720 ENTP 723 + T Sbjct: 670 KTTA 673 >gi|15673102|ref|NP_267276.1| ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis Il1403] gi|12724080|gb|AAK05218.1|AE006344_7 ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis Il1403] gi|326406669|gb|ADZ63740.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. lactis CV56] Length = 758 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 214/700 (30%), Gaps = 145/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53 G ++ L ++ + + V+ N + ++A +L Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSLTPRAQDTLIATF 87 Query: 54 -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEF 107 + + + + + K I+ + + K L + Sbjct: 88 HSMCVRILRRDADHIGYNRNFTIIDPGDQKSLMKRILKEANLDPKKWEPKGLLNAISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D + + + Y++ +K +DF+DLI+ T L + Sbjct: 148 NDLLDESAYEAQTSARHPYEMVVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPD-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 206 -VLSYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ K ++ L ++RST IL + V + Sbjct: 255 GWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTILDAANNVIKNNLKRRPK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 +LW + + + + A Sbjct: 307 ---------------------ELW-------TQNDAGDKIVYFRAGNEQEE-------AN 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +++ I++ I + D VL R + I I Sbjct: 332 KVSEIITSGIRSGR----------SYADYAVLYRTNAQSRTIEDSF----VKSNIPYTMV 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 I+D++A + + D++SF ++ P + K+ ++ Sbjct: 378 AGTKFYSRKEIRDVIAYLNVVANPADNMSFERIVNEPKRGVGPGALEKLRRFADSRGLSL 437 Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + ++ L ++ + + +L + Sbjct: 438 ADSSFDIMLSDIRGKAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERTGYVKALQMMP 497 Query: 522 GNE---VIDVLDEFLNFTLRNEQNS-------------YSSLQELISELEQYPPTIKRAH 565 E I+ ++EFL+ T ++ S + L +L L + + Sbjct: 498 SIENQARIENIEEFLSVTKGFDEKSEIPLDEETGEPIVETGLDKLSRFLNEVSLLSETDA 557 Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 ++V +MT+H AKGLE P+VFL+ +F + Sbjct: 558 YEEESDQVTMMTLHAAKGLEFPIVFLIGMEENIFPLSRVN-------------------- 597 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL YVG+TRA + L + Sbjct: 598 --------------EDIDELEEERRLAYVGITRAEETLYL 623 >gi|281491616|ref|YP_003353596.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis KF147] gi|281375334|gb|ADA64847.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis KF147] Length = 758 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 103/700 (14%), Positives = 214/700 (30%), Gaps = 145/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53 G ++ L ++ + + V+ N + ++A +L Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSLTPRAQDTLIATF 87 Query: 54 -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEF 107 + + + + + K I+ + + K L + Sbjct: 88 HSMCVRILRRDADHIGYNRNFTIIDPGDQKSLMKRILKEANLDPKKWEPKGLLNAISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D + + + Y++ +K +DF+DLI+ T L + Sbjct: 148 NDLLDESAYEAQTSARHPYEMVVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPD-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 206 -VLSYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ K ++ L ++RST IL + V + Sbjct: 255 GWRGADMQNILDFEKDYPK--------TKVVLLEENYRSTKTILDAANNVIKNNLKRRPK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 +LW + + + + A Sbjct: 307 ---------------------ELW-------TQNDAGDKIVYFRAGNEQEE-------AN 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +++ I++ I + D VL R + I I Sbjct: 332 KVSEIITSGIRSGR----------SYADYAVLYRTNAQSRTIEDSF----VKSNIPYTMV 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 I+D++A + + D++SF ++ P + K+ ++ Sbjct: 378 AGTKFYSRKEIRDVIAYLNVVANPADNMSFERIVNEPKRGVGPGALEKLRRFADSRGLSL 437 Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + ++ L ++ + + +L + Sbjct: 438 ADSSFDIMLSDIRGKAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERTGYVKALQMMP 497 Query: 522 GNE---VIDVLDEFLNFTLRNEQNS-------------YSSLQELISELEQYPPTIKRAH 565 E I+ ++EFL+ T ++ S + L +L L + + Sbjct: 498 SIENQARIENIEEFLSVTKGFDEKSEIPLDEETGEPIVETGLDKLSRFLNEVSLLSETDA 557 Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 ++V +MT+H AKGLE P+VFL+ +F + Sbjct: 558 YEEESDQVTMMTLHAAKGLEFPIVFLIGMEENIFPLSRVN-------------------- 597 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL YVG+TRA + L + Sbjct: 598 --------------EDIDELEEERRLAYVGITRAEETLYL 623 >gi|261213182|ref|ZP_05927465.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341] gi|260837600|gb|EEX64294.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341] Length = 723 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 116/690 (16%), Positives = 219/690 (31%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + L + + Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110 F + L + F + Q + K K+ +L +K ++ Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + L Y+EA + ++DF ++++ T +LL+ IR Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ +R + + + VGD+ QSIY + Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + + I L ++RST IL + + + G Sbjct: 258 GARIENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 QLW + S S ++ L + AR + Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I D +L R + ++ ++ Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + IKD ++ R I ++ DD +F ++ +P + + I R T+++ Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLDTIRFAARDRGCTLWDA 440 Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 N ++ I+ L H + + + G Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLFEMYQQEKGE 500 Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + E+ + L + L + + + V++MT+H Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTTLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P VF+V +F + Sbjct: 561 SAKGLEFPQVFMVGVEEGMFPSQMS----------------------------------A 586 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616 >gi|302536344|ref|ZP_07288686.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C] gi|302445239|gb|EFL17055.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C] Length = 825 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 124/762 (16%), Positives = 233/762 (30%), Gaps = 133/762 (17%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P VS + + + + + + Sbjct: 125 AAGEMKERVEGLVGPRANAMWVSTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 179 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+K + N K +LK +L F+ T Sbjct: 180 RLMALVCRDLDLDPKK-FPPKSFNAKISNLKNELIDEDA------FAAQAADGFEKT--- 229 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 230 ---LAQAYAMYQGRLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 283 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L + P L VGD QSIY+F GA + +L+ + Sbjct: 284 DTNHAQYTLVRELVGPGYP----DLPPAELCVVGDADQSIYAFRGATIRNILQFEEDY-- 337 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + + I L ++RST IL+ + V EN + + Sbjct: 338 ------KDATTILLEQNYRSTQTILSAANAVIERNENRRAKN------------------ 373 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + + + A+ +A I + Sbjct: 374 ---LW------TQAGTGAVITGYVADTEHDE--------AQFVADEIDRLTDAG------ 410 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ + R + + + + + ++D++A R Sbjct: 411 ---DAKAGDVAIFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 463 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--H 483 + + ED++ +L P E I E T + +++ + + Sbjct: 464 VLANPEDNVPLRRILNVPKRGIGERAEAMIDALAMREKITFPQALRRVDEAFGMAARSTN 523 Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 +K + L+ + P +L + + + I+ L E Sbjct: 524 AVKRFNVLMEELRTIVDSGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 583 Query: 536 TLRNEQ----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 L EQ ++ +L E + + L I + + +MT+HTAKGLE PVVF Sbjct: 584 ALEFEQARDESNPGTLAEFLEQVALVADSDQIPDEDTDGSGVITLMTLHTAKGLEFPVVF 643 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L VF H + EE R Sbjct: 644 LTGMEDGVFPHMRALG----------------------------------QTKELEEERR 669 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YVG+TRA ++L + + S S + + + + K+ Sbjct: 670 LAYVGITRARERLYLTRSSMRSAWGTPSYNPPSRFLEEIPAEYLQWKRTGAAQKPAGPVR 729 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + S+ + E + + Sbjct: 730 GSGYGSSSGKSSFGTSPEAFLSSSRTRSGPSGFATRRAADKP 771 >gi|239929399|ref|ZP_04686352.1| ATP-dependent DNA helicase II [Streptomyces ghanaensis ATCC 14672] gi|291437725|ref|ZP_06577115.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291340620|gb|EFE67576.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 835 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 122/769 (15%), Positives = 230/769 (29%), Gaps = 142/769 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D F+ T Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELVDEED------FAARAADGFEKT--- 233 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 234 ---LAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS-----PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DT+ Q+ ++R L + + P L VGD QSIY+F GA + +L+ + Sbjct: 288 DTNHAQYALVRELVGSSEQPVDAPGNAGETAPAELCVVGDADQSIYAFRGATIRNILQFE 347 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I L ++RST IL + V E+ + + Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILGAANAVIERNESRRPKN------------- 386 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW + + + + A+ +A I + Sbjct: 387 --------LW-------TNAGAGARITGYVADTEHDE-------AQFVADEIDRLTDAGQ 424 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +A D+ V R + + + + + ++D+ Sbjct: 425 ---------AKAGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDV 471 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480 +A R + + ED + +L P + I + E + + + + Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALAQRERISFPQALGRVDEAYGMA 531 Query: 481 FQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 + + +L IA+ + P +L + + + I+ L Sbjct: 532 ARSVNAVKRFNTLMEDLRTIAESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQ 591 Query: 531 EFLNFTLRNEQNSYSS------------LQELISE--LEQYPPTIKRAHSANHNEVRIMT 576 E L EQ L + + + L I + +MT Sbjct: 592 ELAAVALEFEQGRGEGAVPPGATAPGGTLADFLEQVALVADSDQIPDEDEDGSGVITLMT 651 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +HTAKGLE PVVFL VF H L Sbjct: 652 LHTAKGLEFPVVFLTGMEDGVFPH----------------------------------LR 677 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 + EE RL YVG+TRA ++L + + + S + + + + K Sbjct: 678 ALGQTKELEEERRLAYVGITRARERLYLTRSTMRSAWGQPSYNPPSRFLEEIPATHLEWK 737 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + S + + + P + Sbjct: 738 RTGGGSPAASGPVSGVAASLSSSRSRSSAAGASGFATRRAAEQPAASLA 786 >gi|118581858|ref|YP_903108.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379] gi|118504568|gb|ABL01051.1| ATP-dependent DNA helicase PcrA [Pelobacter propionicus DSM 2379] Length = 762 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 96/595 (16%), Positives = 183/595 (30%), Gaps = 117/595 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + A Y+E +K LDF D++I T LL++ +R + + I++DE QDT+ + Sbjct: 170 QIYAAYQERLRKCNALDFGDMLIQTVRLLEQFPE---VRQRCQERFQWIMVDEYQDTNPV 226 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +IR L + R L VGD+ QSIYS+ GA+ + +L ++ Sbjct: 227 QYRLIRLLAGE----------RRNLCVVGDDDQSIYSWRGADIRNILEFEKDFP------ 270 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +++ L ++RST IL V S +G + + Sbjct: 271 --DVAVVRLEQNYRSTTTILKAAGAVVSRNIGRRGKTLWTENP----------------- 311 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + D AR +A I ++ I Sbjct: 312 ----------EGEKIRYHRVESDREE--------ARLVAREIVSLRSRG----------I 343 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +++ V R + L+ + + +KD++A R + + Sbjct: 344 PLEEMAVFYRTNAQSRLVEEALVSEA----LPYHIVGGVRFYARMEVKDILAYLRILDNP 399 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANC------GISKFQHV 484 D++S ++ P I +I + + Y + + A ++ Sbjct: 400 ADEISLKRIINVPSRGIGGATIDRISQRVASSGASFYAAMAECAGSGLLGSGPRARVASF 459 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRN-E 540 + + + + ++ + E ++ L++ L E Sbjct: 460 VDMMERFREMVALRGLPELCQTVMEESGYLARLRESRDQEDSERLENLEQLLAAMEEFCE 519 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + L + ++ V +MT+H AKGLE VF++ ++F H Sbjct: 520 KEPQAGLSAFLEQVSLVSDLE--QGGQGKPSVTLMTLHAAKGLEFRAVFMIGMEERLFPH 577 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 EE RL YVGMTRA + Sbjct: 578 VRALDDLDG----------------------------------MEEERRLCYVGMTRARE 603 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 +L + + + D + Sbjct: 604 RLYLLNTRRRYLFGQEQCNPPSRFLKDIPAGLLDDGGEPSQPGLGFRSAAEQAGR 658 >gi|303250592|ref|ZP_07336789.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252961|ref|ZP_07534849.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650580|gb|EFL80739.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859599|gb|EFM91624.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 732 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 112/551 (20%), Positives = 192/551 (34%), Gaps = 121/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFQDKP---PILQRYQQRFRQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R+ T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGET--QASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 609 AKKKLTISYAE 619 >gi|163868698|ref|YP_001609910.1| DNA helicase II [Bartonella tribocorum CIP 105476] gi|161018357|emb|CAK01915.1| DNA helicase II [Bartonella tribocorum CIP 105476] Length = 787 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 107/579 (18%), Positives = 191/579 (32%), Gaps = 108/579 (18%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + L Y+ K DF DL++++ + + I + + +IL+DE QDT Sbjct: 216 MGRELYRSYQNRLKDLNACDFGDLLLHSISIFQHNPD---ILREYHSQFRYILVDEYQDT 272 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +R L + L VGD+ QSIY + GA+ + +LR ++ Sbjct: 273 NTAQYLWLRLLAQHP------QDQNVNLCCVGDDDQSIYGWRGAKVENILRFEKDFP--- 323 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 II L ++RST+ IL + + E G S Sbjct: 324 -----SAKIIRLERNYRSTSHILKAASHLIAHNEERLGKVLFSAQI-------------- 364 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + ++ S +DS + AR I I + ++ Sbjct: 365 ------------KSEEEKVKIHSAWDSAEE-------ARAIGEEIERAQQSGHALNH--- 402 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + +LVR L ++ + + I+D MA R + Sbjct: 403 -------MAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYLRVV 451 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481 + DDL+F ++ +P + + + R +++ + S Sbjct: 452 VHPADDLAFERIINTPKRGIGDATLRILYESARARAVSLFSAAADIIETDELKPKARSAL 511 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + +I+ ++ Q + +IL ++ E L+ EQ Sbjct: 512 RSLIENFRRWQNMLQCTPHRELAEIILDDSGYTTMWLEDRSPEAPTRLENLKEMIRSIEQ 571 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L + LE ++ ++ N + V IMT+H+AKGLE VFL +F H+ Sbjct: 572 -----FENLQNFLEHVALVMETENNENMDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 626 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 +S EE RL YVG+TRA Sbjct: 627 RSLD--------------------------------EGGRSGLEEERRLAYVGLTRAKKH 654 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 L I SN + + V ++ Sbjct: 655 LHIWFVSNRRVHGLWQSALPSRFLDELPAEHIEVIAMET 693 >gi|255973804|ref|ZP_05424390.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2] gi|255966676|gb|EET97298.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2] Length = 746 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 216/635 (34%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 25 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 84 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 85 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 144 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 145 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 202 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 203 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 251 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 252 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 302 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 303 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 328 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 329 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 375 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 376 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 435 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L+ + + + L R+ +++ Sbjct: 436 EAAQNVDLANISGKAGKELGNFGMMIQDLMKTVPYLTITELVKETLQRSGYREALMAQNN 495 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 496 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 553 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 554 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 588 >gi|313674951|ref|YP_004052947.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126] gi|312941649|gb|ADR20839.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126] Length = 754 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 99/550 (18%), Positives = 186/550 (33%), Gaps = 115/550 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + ++ +DF+DL+ NTN L + + K Q +++IDE QDT++ Sbjct: 176 AIYKEYVQRCFRSGAMDFDDLLFNTNVLFRDH---LDVLNKYQQRFKYVMIDEFQDTNIS 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + + L+ + + VGD+ QSIY+F GA + +L ++ Sbjct: 233 QYLITKRLSA----------VNQNICIVGDDAQSIYAFRGANIQNILNFEKDYP------ 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST +I+ + V + + ++ V L Sbjct: 277 --DLRVIKLEQNYRSTQNIVNAANSVILKN---------AAQLKKKVWTQNDDGELVHLI 325 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + R +A +I F + + + Sbjct: 326 KSTSDNEEG--------------------------RLVASSI---------FEDKNNKKL 350 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + KD +L R + + R I IKDL+A RF ++ Sbjct: 351 ENKDFAILYRTNSQSRAMEEALR----KSNIPYRIYGGLSFYQRKEIKDLLAYLRFTINH 406 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-----VYEYIQKFANCGISKFQHVIK 486 D+ SF ++ P + KI E + + + + N + + + Sbjct: 407 NDEQSFRRIINLPKRGIGASSVDKIVVAAFENDLGIWDVLQKSQRVLPNRAANAVDNFVT 466 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---E 540 I + +D I ++ E + + E LN E Sbjct: 467 LIKTFKIRLEKADAYDTAAFIAKQSGLLKELYDDKTIEGLNRYENVQELLNAIKEFVDDE 526 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 Q SL+ I+++ N + V +MT+H+AKGLE VF+V +F Sbjct: 527 QQEDKSLEAFIADVALLTDADNEDKDNN-DHVNLMTIHSAKGLEFKHVFIVGMEEDLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + ++ EE RL YV +TRA + Sbjct: 586 QMMLNS----------------------------------RADLEEERRLFYVALTRAME 611 Query: 661 QLIICKHSNT 670 ++ + Sbjct: 612 KVTLSYALTR 621 >gi|52629180|gb|AAU27921.1| DNA dependent ATPase I and helicase II [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 730 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 109/580 (18%), Positives = 191/580 (32%), Gaps = 117/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ + + V+DF +L++ T++LL+ + I + IL+DE QDT+ I Sbjct: 181 AIYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE---ILAHYRERFQAILVDEFQDTNTI 237 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + AVGD+ QSIY + GA+ + + + Sbjct: 238 QYAWIRLLAGDHTA----------VLAVGDDDQSIYGWRGAKVENIQQFVHDF------- 280 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + II L ++RSTA IL + + G +LW Sbjct: 281 -KDTHIIRLEQNYRSTAMILNAANALILNNSTRMGK---------------------ELW 318 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ S F+ L + AR + I + Sbjct: 319 -------TAGSEGEKILVYSAFNELDE-------ARFVTERIGMELNQG----------A 354 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 A +I VL R + ++ I+ D IKD +A R +++ Sbjct: 355 SADEIAVLYRSNAQSRVLEEAL----LRAGIAYRIYGGVRFFDRAEIKDTLAYLRLLVNP 410 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ P E + ++ R E +++ + G Sbjct: 411 NDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSLWGASKGILQSTGLGQRGSLALAKF 470 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN-- 539 I I +L + + + ++ + +D L E +N + Sbjct: 471 IDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKIKGDKSESRVDNLQELINAAKQFRY 530 Query: 540 EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E + L + S L + V +MT+H AKGLE P+VFLV +F Sbjct: 531 EYDEEEELPLVNSFLAHASLESGELQADEHERSVHLMTLHAAKGLEFPIVFLVGMEEGIF 590 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + EE RL YVGMTRA Sbjct: 591 PGRQSLEEPG----------------------------------RLEEERRLCYVGMTRA 616 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 +L++ + + + ++ Sbjct: 617 MRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLDEVRV 656 >gi|325696764|gb|EGD38652.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK160] Length = 762 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLIYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + D +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 ++ + S L +L L + +EV +MT+H AKGLE PVVFL+ Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLNYQGLARPA 651 >gi|197334239|ref|YP_002154837.1| DNA helicase II [Vibrio fischeri MJ11] gi|197315729|gb|ACH65176.1| DNA helicase II [Vibrio fischeri MJ11] Length = 733 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 117/691 (16%), Positives = 224/691 (32%), Gaps = 132/691 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + + + L S Sbjct: 30 GAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTNKAAAEMRGRIEELMHGSAGGMWNGT 89 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111 F + L F Q+ ++ + I ++ D K + FI + Sbjct: 90 FHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKAQNLDDKNWPARQAAWFINGK 149 Query: 112 --DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + +++ + + Y+EA + ++DF ++++ ++LL+ I Sbjct: 150 KDEGLRPHQINSFNDPITQTWLKVYSAYQEACDRAGLVDFAEILLRAHELLRDH---KHI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R HIL+DE QDT+ IQ+ +R + S + VGD+ QSIY + Sbjct: 207 REHYQARFKHILVDEFQDTNNIQYAWLRMMAG----------SDCDVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + I L ++RSTA+IL +++ S G Sbjct: 257 RGAQIENIQKFLDEF--------VGAKTIRLEQNYRSTANILNAANELISNNTERMGKK- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW S S ++ L + AR Sbjct: 308 --------------------LW-------TEGVEGDLISIYSAYNELDE-------ARFA 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D L R + ++ + Sbjct: 334 VGKIKEWRDNGGALE----------DSAFLYRNNAQSRVLEEAL----IQAGLPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468 + IKD ++ R + ++ DD +F ++ +P + + + R T+++ Sbjct: 380 MRFFERQEIKDALSYLRLMNNRNDDAAFERVVNTPTRGLGDKTLETVRFAARERGATMWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 I+ I+ L + C H+ ++ + + G Sbjct: 440 ASIALIEEQVLPGRAAGALSRFIELINALEDDTRDCRLHEQTDQVIKSSGLFAMYEQEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + I+ L+E + T + E+ + +L + L + + V++MT+ Sbjct: 500 EKSKARIENLEELVTATRQFEKPEEAEEMTDLTAFLTHAALEAGEGQADEFEDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+VF+V +F + Sbjct: 560 HSAKGLEFPLVFMVGVEEGMFPSQMS---------------------------------- 585 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA ++L I Sbjct: 586 AEEAGRLEEERRLCYVGMTRAMEKLYITYAE 616 >gi|73748886|ref|YP_308125.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1] gi|73660602|emb|CAI83209.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1] Length = 738 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 108/634 (17%), Positives = 205/634 (32%), Gaps = 120/634 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + YE+ K+N LDF+DL++ L K+ + + H+++DE QD Sbjct: 167 EMVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQYPE---VLAGYQERYLHVMVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+L+Q+E+++ L+ + R + VGD QSIYS+ A+ + V + Sbjct: 224 TNLVQYELVKMLSAKY----------RNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST +IL V + + +S Sbjct: 270 ----NPGAKVVLLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + Q + F+ + A+ + I + Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 DI +L R + + Y + +KD++A R Sbjct: 342 YEKFSPGDIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480 + + +D +S ++ P + + R + ++Y+ + ++ K Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLAQFAREQDISLYQSLINLSDENAPKPPIPSR 457 Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535 + LI AQ + +L R+ S G E D + E Sbjct: 458 GLKPLIDFGALLKSLIIDAQTLPLLNLLDRLLEGISYREFLFASEDGEERWDNILELRTV 517 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + ++ + L + LE + V ++T+H AKGLE PVVF+V Sbjct: 518 AQQYQEILPP--EGLSAFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 V H + +E RL YVG Sbjct: 576 EGVLPHNRSFDDP----------------------------------AQMQEERRLCYVG 601 Query: 655 MTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 +TRA +L + + + + N+ + Y R K+ L + Sbjct: 602 VTRAKKRLYLVRAFRRSLMGQSNVNEPSRYLKDIPQSITKGREKQPLLGQQTPGQAVLPV 661 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 P++ + + E + ++ P Sbjct: 662 IKQHVQSAGMPVKSAPSPAPKLLELEAGDRVLHP 695 >gi|258616015|ref|ZP_05713785.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] Length = 706 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 117/732 (15%), Positives = 237/732 (32%), Gaps = 138/732 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ + + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + + Sbjct: 91 FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + F S +A A Y++ + N +DF+DLI+NT L ++ S Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKEFQYNQCMDFDDLIMNTIRLFEEHPDS-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ ++I L ++RST +IL+ ++V N + + Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ + + R Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I ++ D +L R + ++ I Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467 D IKD++A +++ +D +SF ++ SP I K+ + E + Sbjct: 382 GHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441 Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q I + + I E+ + + + + +L + + Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501 Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570 E + L+EFL T + EQ + +L + + + + Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H AKGLE PVVFL+ VF Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA + L + + + ++ V + Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647 Query: 691 NDERVKKIKLTN 702 ++ ++ T Sbjct: 648 ELLEIEGMRPTP 659 >gi|298208568|ref|YP_003716747.1| putative helicase [Croceibacter atlanticus HTCC2559] gi|83848491|gb|EAP86360.1| putative helicase [Croceibacter atlanticus HTCC2559] Length = 773 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 114/705 (16%), Positives = 222/705 (31%), Gaps = 132/705 (18%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K + ++ ++ I ++ F ++ ++ + + Y E K +DF+ Sbjct: 136 KYKQVYSRISSYKNSLITVKAYFQNPELIEADAMAKRPRLGDIYKEYVERCFKAGAMDFD 195 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K +IL+DE QDT+ Q+ ++R+L++ F Sbjct: 196 DLLLRTNELLNRFPE---VLNKYQNRFKYILVDEYQDTNHSQYLIVRALSDKF------- 245 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIY+F GA +L +R + L ++RST +I Sbjct: 246 ---QNICVVGDDAQSIYAFRGANINNILNFQRDYDN--------VEMYRLEQNYRSTKNI 294 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + +W + P+ Sbjct: 295 VNAANSIIDKNKTKLDKV---------------------VW------TANDEGPKIRVNR 327 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 D R +A +I F N + ++ +L R + + Sbjct: 328 LINDGEEG--------RFVASSI---------FENKMEHQLRNGQFAILYRTNAQSRAME 370 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD+++ R I + D+ + ++ P + Sbjct: 371 DALR----KKDIPYRIYGGLSFYQRKEIKDVISYLRLIANPNDEEALKRVINYPTRGIGQ 426 Query: 451 DDIFKICTQRHE-TETVYEYIQKFAN-------CGISKFQHVIKYIHELIHIAQFCSPHD 502 I K+ + +++E + +K ++ + IH + + Sbjct: 427 TTIDKVAIAANHYKRSMFEVMANIDKVDIGVNTGTKNKLKNFVNMIHHFQILNKESDAFS 486 Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISE 553 + Q E I+ ++E LN + SL E + + Sbjct: 487 VAEAVAKKTGLIQDLKKDGTPEGVARIENVEELLNGIKDFVEGQVELADATGSLAEFLED 546 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + T + + V +MT+H AKGLE P V++V +F Sbjct: 547 IALA--TDMDKEVGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFPS------------- 591 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + +S EE RL YV +TRA Q + + Sbjct: 592 ---------------------AMSMNTRSELEEERRLFYVALTRAEKQAYLTYTQSRYRW 630 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K + + I + K W + +Q Sbjct: 631 GKLIDAEPSRFIEEIDEQY-IDWMIPQDDYKYKPLVSPDLWGDVD--------KSKFRQT 681 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 ++ P P + + L P+ + + LS+ Q Sbjct: 682 KPKKGTPPPSHKPTDEQLRKLRRLRPTDASKEVQKAAPISLSEGQ 726 >gi|240950109|ref|ZP_04754404.1| DNA-dependent helicase II [Actinobacillus minor NM305] gi|240295410|gb|EER46179.1| DNA-dependent helicase II [Actinobacillus minor NM305] Length = 731 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 115/604 (19%), Positives = 210/604 (34%), Gaps = 117/604 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I T ++LK + + I + Q HILIDE QDT+ I Sbjct: 175 EIYQLYQDACDRAGLLDFAELLIRTYEMLKNKPL---ILQRYQQRFQHILIDEFQDTNNI 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I L + VGD+ QSIY + GA+ + + R + ++ Sbjct: 232 QYDLIHLLAGQ----------HGKVMIVGDDDQSIYGWRGAQVENIQRFLKDYEQ----- 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ + +N G + G V+++ Sbjct: 277 ---AQTIRLEQNYRSTGHILASANELIANNDNRLGKKLWTE---------SGDGDPVEIY 324 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + AR +A I + Sbjct: 325 CAFNELDE--------------------------ARFVAAQIQQWKEDEG---------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 349 SFSECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLISNR 404 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R + T+++ IQ + + S Sbjct: 405 QDDAAFERVINTPPRGIGERTLETIRQLTRTRSITLWQAIQVAIQEEQLSGRAASALLRF 464 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 ++ I+ L + S D ++ + + G++ ID L+E + T + Sbjct: 465 VELINALDSETEQMSLADQTDFVIRKSGLYEMYKQEKGDKGEVRIDNLEELVTATKQFTP 524 Query: 541 QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L L + L S + + V +MT+H+AKGLE P VF+V +F Sbjct: 525 PDEAEDLTPLTAFLTHASLEAGEAQASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 584 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + +E RL YVG+TRA Sbjct: 585 SGMS-----------------------------------HDEGRLQEERRLAYVGITRAK 609 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 +L I K + + + R +++ + + ++ P Sbjct: 610 KKLTISHAELRRLYGKEERHIPSRFIAELPEEHIREIRLRGNINRAASFASSSPFAKTAP 669 Query: 720 ENTP 723 + T Sbjct: 670 KTTA 673 >gi|324993214|gb|EGC25134.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK405] gi|327461484|gb|EGF07815.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1] Length = 762 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 109/729 (14%), Positives = 222/729 (30%), Gaps = 139/729 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53 G ++ L ++ + + V+ N + ++A+ L Sbjct: 28 GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKTEAQDCLIATF 87 Query: 54 -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEF 107 + + + ++ T K I+ ++ K + + L + Sbjct: 88 HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKNLNLDPKKWNERAILGTISNAK 147 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + D + + Y++ +++ +DF+DLI+ T L + Sbjct: 148 NDLIDEVAYANLADDMYT--EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD-- 203 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + Q +I +DE QDT+ Q+++++ L F + + VGD QSIY Sbjct: 204 -VLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + +L ++ + ++ L ++RST IL ++V N + Sbjct: 253 GWRGADMQNILDFEKDYP--------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPK 304 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + ++ + D + A Sbjct: 305 N---------------------LW-------TQNEDGEEIVYYRANDEQDE-------AL 329 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A TI + KD VL R + + I Sbjct: 330 FVARTIDQLSREG----------YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMV 375 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 I+D+++ I + D++S+ ++ P + KI + ++ Sbjct: 376 GGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEPKRGVGPGTVEKIRDFAASQEISL 435 Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + +L + D +L ++ Sbjct: 436 LDASANILLSPVKGKAAQAVYDFANMLLDLRECLDDYTVTDLVEAVLEKTGYAAALAAQA 495 Query: 522 GNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEV 572 E I+ ++EFL+ T +++ S L +L L + +EV Sbjct: 496 TLESKARIENIEEFLSVTKNFDESPDNPTDESGLDKLSRFLNDLALIADTDDGDTESSEV 555 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFLV VF + Sbjct: 556 TLMTLHAAKGLEFPVVFLVGMEENVFPLSRASEDEDELEEERRL---------------- 599 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 YVG+TRA L + ++ K+N + + + Sbjct: 600 ------------------AYVGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDL 641 Query: 693 ERVKKIKLT 701 + + Sbjct: 642 LDYQGLARP 650 >gi|262038007|ref|ZP_06011419.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264] gi|261747960|gb|EEY35387.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264] Length = 733 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 119/693 (17%), Positives = 224/693 (32%), Gaps = 137/693 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ + Y+ + +S +N + ++A+ L A + Sbjct: 27 GAGSGKTRTVTYRIAHMIKEIGISPMNILALTFTNKAAREMKERAEALIGADSYNLVVST 86 Query: 66 FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEKLK--KSQDEFIK 109 F S L QK+IIT+ I K + L K + K Sbjct: 87 FHSFSVKLLKTYADRIGFGRNFNIYDVDDQKSIITK-IKKDLNTGNDDLTPGKIAGKISK 145 Query: 110 IRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 ++++ + + L + Y E K N +DF DL++N LL Sbjct: 146 LKEQGIGINELEEEIDLKLPWNKLFYDIYKQYNEVLKANNAMDFSDLLLNARKLLDDP-- 203 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 ++ ++ +I++DE QDT+ IQ+++I + + + + VGDE QS Sbjct: 204 --YVLERVQDRYRYIVVDEYQDTNDIQYQIISIIAAKY----------KNICVVGDEDQS 251 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY+F GA +L +R +++L ++RST IL V ++V E+++ Sbjct: 252 IYAFRGANINNILNFERDYPDAL--------VVKLERNYRSTKRILDVANEVIKNNESSK 303 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 G LW + + + Sbjct: 304 GKK---------------------LWTDGDEGEKIKIFNAENVYD--------------E 328 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A I I KD+ +L R + ++ I Sbjct: 329 ADYIVENIRAKHLQGKA----------YKDMTILYRTNAQSRVLEEKLLA----SNIPYK 374 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464 IKD++A + ++ D+ +F+ ++ P + + + KI + + Sbjct: 375 IYGGMQFFQRKEIKDILAYLSLLNNKNDNHNFLRIINVPKRSIGDKTLEKINNLAQKKGL 434 Query: 465 TVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++++ I + + + + S + F ++ K Sbjct: 435 SMFDSLKFINEISELRAGVRETLANFYNMMQGIYESLDELSVKEVFDEVMSKTKYIDCI- 493 Query: 519 SRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 + + ++E LN + QN SL E + + T N V++MTV Sbjct: 494 EDNKEDRVKNIEELLNSITEAQKQNEGLSLSEYLDMVSLSTSTDGMEDEE--NFVKLMTV 551 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H++KGLE VF+ +F + + Sbjct: 552 HSSKGLEFDYVFIAGMEDGLFPSCNFETPEEDIEEE------------------------ 587 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 RL YV +TRA +L I S Sbjct: 588 ----------RRLCYVAVTRAKKELFISHVSER 610 >gi|269796104|ref|YP_003315559.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542] gi|269098289|gb|ACZ22725.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542] Length = 857 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 127/808 (15%), Positives = 247/808 (30%), Gaps = 157/808 (19%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P S + + ++ L+Q+ + Sbjct: 87 AAAEMRERVAAIVGPAAGRMWVSTFHSACVRILRREAKSL-----GLRQSFSIYDSADSQ 141 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+K +++ K LK++L + + + + S Sbjct: 142 RLITMVLRELDLDPKK-FPAKQLQNKISSLKDELVT-PERYAA--ESGASSPQGSSANEV 197 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + + Y+ ++ LDF+DLI++T LL++ + + H+L+DE Q Sbjct: 198 DQVLSDVYSRYQARLRQAHALDFDDLIMSTVTLLQEHP---PVAEHYRRRFRHVLVDEYQ 254 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS----------------------------SPRTLFA 218 DT+ Q+ ++R L + H P L Sbjct: 255 DTNHAQYILVRELAGSPARSASAHDESSPHDESSPHDGDAAPAPTEPAAAPTLPPGELTV 314 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD QSIY+F GA + +L + I L ++RST +ILT + V Sbjct: 315 VGDADQSIYAFRGATIRNILEFEADYP--------DARTILLEQNYRSTQNILTAANAVI 366 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 S + + LW D+ + + + + Sbjct: 367 SRNTDRKPKR---------------------LW------TDAGEGAKIIGYVADNEHEE- 398 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 AR IA I + G ++ D+ + R + + + Sbjct: 399 -------ARFIAQEIDRL---------GDAEKVRPGDVAIFYRTNAQSRALEEVL----I 438 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 + + IKD++A R + + +DD++ +L P E I Sbjct: 439 RVGLPYKVVGGTRFYERREIKDVIAYLRAVANPDDDVNLRRILNVPKRGLGERAESMIVA 498 Query: 459 QRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGA 510 Q + + + I + + + L +A+ + P + +L Sbjct: 499 QAERDRSSFGEALDRLDEIPGLTARSRTPLKAFRDLMDGLRELAEGGAGPAEVIGEVLDR 558 Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS 566 + + + ++ L E E++ L + + + + + + Sbjct: 559 TGYLKDLRASDDPQDESRVENLAELHAVAAEFEESEPEGTLADFLERVSLVADSDQIPSA 618 Query: 567 A----------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + V +MT+HTAKGLE PVVFL F H Sbjct: 619 DDSGHEGTPVVDPGVVTLMTLHTAKGLEFPVVFLTGMEDGTFPHMRSLH----------- 667 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + E RL YVG+TRA ++L I + + S + Sbjct: 668 -----------------------DEVELAEERRLAYVGITRARERLYISRSAVRSAWGMA 704 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 N+ + + ++ + + S + + R + Sbjct: 705 NEFPASRFLDEVPEELWDWRRRESSMSALRGPGGYSGGYGSGGYGSGQRRRSSDDDDFAP 764 Query: 737 QKIPKKLFSP----IKNDINEPYILNPS 760 S I +P PS Sbjct: 765 PIGGSGYRSSKTTTIPAWKKQPEDAAPS 792 >gi|315166930|gb|EFU10947.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1341] Length = 791 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 70 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTICLFNEQPDT-- 247 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633 >gi|319761999|ref|YP_004125936.1| uvrd/rep helicase [Alicycliphilus denitrificans BC] gi|317116560|gb|ADU99048.1| UvrD/REP helicase [Alicycliphilus denitrificans BC] Length = 796 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 102/690 (14%), Positives = 209/690 (30%), Gaps = 143/690 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K+ ++ + ++ + L YEE ++ V+DF +L++ + +LL Sbjct: 148 KQLAYFIAGCKEEGLRPRDVEAHDSDTRKKVELYQLYEEQCQREGVVDFGELMLRSFELL 207 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + D +R + HIL+DE QDT+ +Q+ ++ L D + ++ AVG Sbjct: 208 RDND---PVRVHYQRRFRHILVDEFQDTNRLQYAWLKQLAGDVV--DGRLVTQGSVIAVG 262 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + R R I+L ++RS ++IL + + + Sbjct: 263 DDDQSIYAFRGARVGNMQDFVREFDVR--------HQIKLEQNYRSYSNILDSANALIAH 314 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + + + + D Sbjct: 315 NSRRLGKNL---------------------------RTTQGPGEPVRVYEAPTDLAE--- 344 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I I ++ + +I VL R + +I + Sbjct: 345 -----AQWIVDEIRQLVREG---------PMPRSEIAVLYRSNAQSRVIESAL----FNA 386 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 + + IK +A R + + DD SF+ ++ P + ++ Sbjct: 387 SVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGIGARTLEQLQDAA 446 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 R ++++ + + + + Q + +L + + + + Sbjct: 447 RGSGCSLHDAVSSVPGKAGVNLGAFVAMVDVMREQTQGRNLRAIIGQVLESSGLLEHYRN 506 Query: 520 RF-GNEVIDVLDEFLNFTLRN--------------------------------------- 539 G + ++ LDE ++ Sbjct: 507 EKEGADRLENLDELISAAESFVTQEGFGRDAVALPLDETGAALTQSPASQGLDPNRPLLQ 566 Query: 540 ----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + ++ +L L + L A + V++MTVH +KGLE VF+ Sbjct: 567 QPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGME 626 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H++ + EE RL+YV Sbjct: 627 EGLFPHEN----------------------------------AMSDQGGLEEERRLMYVA 652 Query: 655 MTRASDQLIICKHSNT--SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 +TRA +L + + + N R+ + + + S D A Sbjct: 653 ITRARKRLYLSHAQTRLLHGQTRYNVRSRFFDELPEEALKWLTPRQQGFGSYAPDSRAAS 712 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + + +K Sbjct: 713 AYGAGARAGFGFNAAAFASPPVPPRKEEPA 742 >gi|289432882|ref|YP_003462755.1| UvrD/REP helicase [Dehalococcoides sp. GT] gi|288946602|gb|ADC74299.1| UvrD/REP helicase [Dehalococcoides sp. GT] Length = 738 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 101/551 (18%), Positives = 182/551 (33%), Gaps = 118/551 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + YE+ K+N LDF+DL++ L K+ + + H+++DE QD Sbjct: 167 EMVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQHPE---VLAGYQERYLHVMVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+L+Q+E+++ L+ + R + VGD QSIYS+ A+ + V + Sbjct: 224 TNLVQYELVKMLSAKY----------RNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST +IL V + + +S Sbjct: 270 ----NPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + Q + F+ + A+ + I + Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 DI +L R + + Y + +KD++A R Sbjct: 342 YEKFSPGDIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480 + + +D +S ++ P + + R + ++Y+ + ++ K Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLAQFAREQDISLYQSLINLSDENAPKPPIPSR 457 Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535 + LI AQ + +L R S G E D + E Sbjct: 458 GLKPLTDFGALLKSLIIDAQTLPLLNLLDRLLEGISYRGFLFASEDGEERWDNILELRTV 517 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + ++ + L + LE + V ++T+H AKGLE PVVF+V Sbjct: 518 AQQYQEILPP--EGLSAFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 V H + +E RL YVG Sbjct: 576 EGVLPHNRSFDDP----------------------------------AQMQEERRLCYVG 601 Query: 655 MTRASDQLIIC 665 +TRA +L + Sbjct: 602 VTRAKKRLYLV 612 >gi|323494180|ref|ZP_08099295.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546] gi|323311574|gb|EGA64723.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546] Length = 723 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 102/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ IR HIL+DE QDT+ I Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRD---KKHIREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + R Sbjct: 229 QYAWLRMMAG----------PDSHVMIVGDDDQSIYGWRGAKIENIEKFTREFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 310 -------TEGVEGEPISVYSAYNELDE-------ARFAVNKIKEWQEKGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R + ++ Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMTNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R T++E A Sbjct: 402 NDDSAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVALLDEKVLAGRAAGALSRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I L S H+ ++ + G + I+ L+E + T + E+ Sbjct: 462 VELILALEDDTCEMSLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 PEEAEDMTLLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 582 SQMSV----------------------------------EEAGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 ++L I Sbjct: 608 EKLYITYAE 616 >gi|24379604|ref|NP_721559.1| ATP-dependent DNA helicase [Streptococcus mutans UA159] gi|24377553|gb|AAN58865.1|AE014954_4 ATP-dependent DNA helicase [Streptococcus mutans UA159] Length = 733 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 106/665 (15%), Positives = 206/665 (30%), Gaps = 121/665 (18%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156 + L + + D + L Y+ +++ +DF+DLI+ T Sbjct: 112 RAVLAAISNAKNDLLDEIAYENRAGDSYT--QLVAKCYKAYQSELRQSEAMDFDDLIMLT 169 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 L + + Q +I +DE QDT+ Q+++++ L F + + Sbjct: 170 LRLFDQNPD---VLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNI 216 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD QSIY + GA+ + +L ++ + ++ L ++RS+ IL + Sbjct: 217 CVVGDADQSIYGWRGADMQNILDFEKDYPE--------AKVVLLEENYRSSKKILQAAND 268 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 V N + LW + +Q + D Sbjct: 269 VIKNNRNRRDKK---------------------LW-------TQNDDGEQIVYYRADDEQ 300 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + A +A TI+N++ KD VL R + I Sbjct: 301 DE-------AVFVASTIANIVRE---------MGKNFKDFAVLYRTNAQSRTIEEAL--- 341 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I I+D++A I + D++SF ++ P + KI Sbjct: 342 -LKSNIPYTMVGGTKFYSRKEIRDIIAYLNVIANTADNISFERIVNEPKRGVGPGTLEKI 400 Query: 457 -CTQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + ++ E + + + I +L S + +L + Sbjct: 401 RNFANLQGMSLLEASENIMLSSIKGKAVQAVYELANMIIDLRSKLDHYSITEVVEAVLDS 460 Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISEL-EQYPPT 560 + + E I+ ++EFL+ T + + L+ L L + Sbjct: 461 SGYLEVLEIQKTLESQTRIENIEEFLSVTKNFDDTTDDVPENETGLERLSRFLNDLALIA 520 Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 + EV +MT+H AKGLE P+VFL+ VF + Sbjct: 521 DTDEAESESAEVTLMTLHAAKGLEFPIVFLIGLEEGVFPLSRSMEEESELEEERRL---- 576 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680 YVG+TRA L I ++ + +++ Sbjct: 577 ------------------------------AYVGITRAEQMLFITNANSRTLYGRTSYNR 606 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 + + + + + + T + L + +++ + K Sbjct: 607 ESRFIQEISEDLLVHQGLARPARASFKVSYQDSNETKFGQGMSLAQALQARKVASQPKKS 666 Query: 741 KKLFS 745 S Sbjct: 667 PFSNS 671 >gi|182436526|ref|YP_001824245.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777148|ref|ZP_08236413.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus XylebKG-1] gi|178465042|dbj|BAG19562.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657481|gb|EGE42327.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus XylebKG-1] Length = 813 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 117/709 (16%), Positives = 221/709 (31%), Gaps = 134/709 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 126 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 180 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + K +LK +L + F+ T Sbjct: 181 RLMALVCRDLDLDP-KQFPPKSFTAKVSNLKNEL------IDEETFAGQAADGFEKT--- 230 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 231 ---LAQAYALYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 284 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L + +P L VGD QSIY+F GA + +L+ + Sbjct: 285 DTNHAQYTLVRELVG----PAGENDAPAELCVVGDADQSIYAFRGATIRNILQFEEDYP- 339 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + I L ++RST IL+ + V E+ + + Sbjct: 340 -------SATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 374 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + + + + A+ +A I + Sbjct: 375 ---LW-------TNAGSGARITGYVADTEHDE-------AQFVADEIDRLTDAG------ 411 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ V R + + + + + ++D++A R Sbjct: 412 ---DAKAGDVAVFYRTNAQSRVFEEIL----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 464 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482 + + ED + +L P + I E + + +++ + Sbjct: 465 VLANPEDTVPLRRILNVPKRGIGDRAEAMIDALSMREKISFPQALRRVDEAYGMAARSSN 524 Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + EL I + + P +L + + + I+ L E Sbjct: 525 AVKRFNTLMEELRTIVESGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 584 Query: 536 TLRNEQNSYS-----SLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 L EQ +L E + + L I + +MT+HTAKGLE PVV Sbjct: 585 ALEFEQERGDEEGAGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVV 644 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FL VF H + EE Sbjct: 645 FLTGMEDGVFPHMRALG----------------------------------QTKELEEER 670 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 RL YVG+TRA ++L + + + S + + + + ++ Sbjct: 671 RLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPEAHLDWRR 719 >gi|306835515|ref|ZP_07468529.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49726] gi|304568572|gb|EFM44123.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49726] Length = 1059 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 134/1019 (13%), Positives = 269/1019 (26%), Gaps = 158/1019 (15%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + L + S + T ++ E+ ++ Sbjct: 114 TVATYDSYAGELVREYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKLSDEKTLGSITE 173 Query: 72 FFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 L ++ + I + + D + + + + + + + Sbjct: 174 VLLKITSDMDNSLKDPDDIAEFARDFRADIDNLEKAPRTKGEYSKDLQKYINVQDLRVQY 233 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 L + + + V+ F + + L ++ + + Q +++DE QDTS Sbjct: 234 VPLIEELKRTQAEQQVITFGEQMSVAARLAQEHPA---VGKQQAQRYRVVMLDEYQDTSY 290 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q ++RSL ++ AVGD Q+IY + GA + + + Sbjct: 291 AQRVLLRSLF-------GGEHKDISVTAVGDPMQAIYGWRGATSENLTAFVEDFPQ---A 340 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 G +L S+R+ + L + + V + D H+ G ++L Sbjct: 341 DGTPAPKDQLTTSWRNPSGALELANSVAAGVFGGGPRPVDELHAAPHK-----GEGEIEL 395 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + IA + Sbjct: 396 GYFASEDEE--------------------------HEFIAQKLRQQWDAREGDGFRA--- 426 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 VLVR + T I + + N L I+DL+AL ++ Sbjct: 427 ------AVLVRTNRQTAAIAAA----LDAVDVPNEINGLGGLLWQPEIQDLVALATMLVR 476 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----------- 479 ED + + + P+ DI + ++ + ++ Sbjct: 477 PEDAQAALRIFAGPICGLGMGDIQALAARQKNLAGAKQERLQWEEGMDPEEYLRAQLAQL 536 Query: 480 ------------------------------KFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 + + V + L + D F I Sbjct: 537 TAEGPDQTVGLADALADLGERDRYTPQGLARMEEVSAKLRYLRTYSLSKPLSDLFADIEA 596 Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 R + ++R LD+F + SL L+ LE Sbjct: 597 IFNIRTEVLARGSAGGATHLDKFADIVAGF---HGDSLYALLDYLELAREHEDGLGLGEV 653 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ- 624 A+ + V+IMTVH AKGLE V++V S + + + + + D P Sbjct: 654 PASTDRVQIMTVHKAKGLEWEHVYVVHADSSSYKAQAETFLSKIEKVPGDNDYIEVSPDA 713 Query: 625 --SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 + + EE RL YV +TR L + + K+ + + Sbjct: 714 VTRSEFEKACKAFLDDDRAHNAEEAARLFYVALTRTESTLTVTGSGTNNRTGKAKKGPYE 773 Query: 683 DM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + V + +E V+ + + + + L E + + Sbjct: 774 YLERLKETFPQYVGEWTVPEEPVETSAHAAESGLFPALEADPDSLAGADAVLAAMEDLPE 833 Query: 733 LMDEQKIPKK------------LFSPIKNDINEPYILNPST--------IDTKGKTNLES 772 L + D+ P L S + + Sbjct: 834 LSHGETFELWEQDVGALIEEYKSLQQPVVDVELPSELTASDMVALGSDPLQFARRQRRPV 893 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 N RG H L+ +R + E +L L Sbjct: 894 PFKPNSYAKRGTAFHAWLE--------ERFGSPALLGEEELPGIDEPEDFDLEELKESFL 945 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQ 891 + V ++ GR+D + + + ++KT Sbjct: 946 NSEWAQ-------RQPDFVEAPFEITIGSAVVRGRMDAVFRLADDTWMVVDWKTGRPPKG 998 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 QL++Y + + + + YV + F + + Sbjct: 999 TAMEAA---KIQLAVYAEAWRRIHGGDKIRAAFHYVHDGYTFEPDTLAQGEELRSLLES 1054 >gi|261250055|ref|ZP_05942632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891] gi|260939559|gb|EEX95544.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891] Length = 723 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 187/549 (34%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L + Y+EA + ++DF ++++ ++LL+ IR HIL+DE QDT+ I Sbjct: 172 QLYSAYQEACDRAGLVDFAEILLRAHELLRD---KKHIREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + + Sbjct: 229 QYAWLRMMAG----------PDSHVMIVGDDDQSIYGWRGAKIENIEKFTQEFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I + Sbjct: 310 -------TDGAEGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGVL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R + ++ Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMSNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHV 484 DD +F ++ +P + + I R + T+++ Q A Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDQGSTMWQASLHLLENQVLAGRAAGALSRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ ++ L S H+ ++ + G + I+ L+E + T + E+ Sbjct: 462 IELVNALEDDTCELSLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 PEEAEDMTLLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 ++L I Sbjct: 608 EKLYITYAE 616 >gi|300718152|ref|YP_003742955.1| Exodeoxyribonuclease V beta chain [Erwinia billingiae Eb661] gi|299063988|emb|CAX61108.1| Exodeoxyribonuclease V beta chain [Erwinia billingiae Eb661] Length = 1181 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 144/962 (14%), Positives = 315/962 (32%), Gaps = 140/962 (14%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 K W I + + + L Q + + + F F + Sbjct: 232 LKAAWLAAGNLHDVIANSGVDKRSYSSKHLPNWLEKLNQWATEETQDYSFPKDLERFSQR 291 Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 + T++ L +++ + E + +R+ + + A+ Sbjct: 292 VLLEK----TKKGEAPQHPLFDEIDRFLAEPLSLRELVIARALSEIRFAT---------- 337 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 ++ K+ N +L F+DL+ + L++ + I LIDE QDT Q+ + Sbjct: 338 -QKEKQLNALLGFDDLLGRLDSALQQP-AGGALAEAIRGRYPVALIDEFQDTDPQQYRIF 395 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 R+L L +GD KQ+IY+F GA+ ++ + T Sbjct: 396 RTLYGK--------QPENALLLIGDPKQAIYAFRGADIFTYMKARNEVSAHYT------- 440 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 L ++RS+ ++ V+++FS ++ S+ I + + + Sbjct: 441 ---LETNWRSSPGMVNSVNRLFSQQQHPFLFSD-----IPFIAVQPAGPNA-----ALSF 487 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVI 371 D P W D + +AR+ A I + + I K R + Sbjct: 488 TLDGTEQPALRFWLQPGDGVGVSDYQQFMARQCAAEICHWLTAGQQGTALIGKGEKHRPV 547 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILS 430 QA DI +LVR R + + R N I V ++R + ++++ L + +L+ Sbjct: 548 QASDITILVRSRGEAS----VMREALNGLNIPSVYLSNRDSVFTTPEAREMLWLLQAVLA 603 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 E + L + +F + + + + + + + + V+ + E Sbjct: 604 PEQERVLRSALATSIFGLDAVTLDALNQNERAWDALVDEFDGYRQRWLK--RGVLPMLRE 661 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSL 547 L+ +L ++ G ++ L E L L +E L Sbjct: 662 LMINRN------IAEDLLASESGERRLTDLL------HLGELLQEASAQLDSEHALVRWL 709 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + +++ + + ++ + V+I+T+H +KGL+ P+V+L + Sbjct: 710 AQEVAQPNGQSSSQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN------------ 757 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 Q+ + ++ ++ E RLLYV +TR+ + Sbjct: 758 -YREAGQGIYHDRESYQALLDLRDDEESVELAEQERLAEDLRLLYVALTRSVWHCSVGIA 816 Query: 668 --SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW-STHHPENTPL 724 + +K+ N + + E +L + + E + E + P+ TP Sbjct: 817 PLVKGNRKKEGNSDLHRSALGYLVQHGEAADASQLLSHLQSLENDSIEVIAAAAPDATPW 876 Query: 725 EREETIKQLMDEQKIPKKLF---------------SPIKNDINEPYILNPSTIDTKGKTN 769 + + +Q++ Q+I + L + D+ ++ + + Sbjct: 877 QPVQDEEQVLSSQQIGRTLRDEWRVTSYSGLQQHGQSVTFDLLPKLDVDAAGEGQNPLMS 936 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829 + S + G +H L + + + + + L K L I Sbjct: 937 QLTPHSFPRGAAPGTFLHGLFENLDFTQPVEDEWLSEQLLAQGHDLAWLPVMKAWLERIL 996 Query: 830 RL-LENPM--MTTAMSCDSYSE----VSVSGKINCPKKDIIIS----------------- 865 + L++ ++ + E + + + D +I Sbjct: 997 QTPLDDSGVSLSQLPADKRQVELQFYLPIQQMLTASGLDKLIRHHDPLSAECPPLNFQQV 1056 Query: 866 -----GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKIL 911 G ID + Q ++ +YK++ ++ P + Q +Y L Sbjct: 1057 QGMLKGFIDLVFCWQGKYYLLDYKSNWLGASAEDYTPEAMALAMQSHRYDLQYQLYSLAL 1116 Query: 912 KD 913 Sbjct: 1117 HR 1118 >gi|327489339|gb|EGF21132.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1058] Length = 762 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + + +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 +++ S L +L L + +EV +MT+H AKGLE PVVFLV Sbjct: 516 FDESPDNPTDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLDYQGLARPA 651 >gi|291295604|ref|YP_003507002.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] gi|290470563|gb|ADD27982.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] Length = 706 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 125/744 (16%), Positives = 234/744 (31%), Gaps = 135/744 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ ++++ + L +V + ++ + + Sbjct: 28 GAGSGKTRTVVHRIAYLLRERRVYPAEILAVTFTNKAAGEMKERLEKMVGRPARDLWVST 87 Query: 66 FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F + L + + + + ++ LKE LK+ + E R ++ Sbjct: 88 FHAAAVRILRTYGEYVGLRPGFVIYDEDDQNTLLKEVLKELELEAKPGPFRAMIDRIKNR 147 Query: 123 TLASLT---------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 A + Y+ + LDF DL++ T +L ++ Sbjct: 148 GAGLAEYMREAPDFIGGVPKDAAAEVYRKYQSGLRMQGALDFNDLLLLTIELFEQHPE-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +K+ Q I +DE QDT+ +Q+++ R L + L VGD QSIY Sbjct: 206 -VLHKVQQRARFIHVDEYQDTNPVQYKLTRLLAGE----------RPNLMVVGDPDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F A+ +L + +I L ++RS++ IL V + V Sbjct: 255 GFRSADINNILDFTKDYP--------GARVIRLEENYRSSSSILRVANAVIEKNALRLEK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 T V+L+ ++ + A Sbjct: 307 VLRPTRP---------GGEPVRLYRAPNAREE--------------------------AA 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I + + I VL R + L+ R + V Sbjct: 332 FVAREIVKL--------------GNFQQIAVLYRTNAQSRLLEEHLR----RANVPVRLV 373 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 + IKDL+A GR ++ D ++ ++ +P + ++ + TV Sbjct: 374 GAVGFFERREIKDLLAYGRVAVNPADSINLRRIVNTPPRGIGATTVSRLVEHAQKTGTTV 433 Query: 467 YEYIQ--KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGN 523 +E + + + Q ++ + ELI A P FF +L R+ G Sbjct: 434 FEAFRVAEQVISRPQQVQAFVRLLDELIEAAFESGPTAFFQRVLEQTGFREALKQEPDGE 493 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 + + ++E L E+ SL + + + + A V +MT+H AKGL Sbjct: 494 DRLQNVEELLRAAQDWEEEEGGSLSDFLDSVALTAKAEEPQGDAPAEAVTLMTLHNAKGL 553 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P VFLV + H++ + Sbjct: 554 EFPTVFLVGLEENLLPHRNSLH----------------------------------RLED 579 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 EE RL YVG+TRA ++L + K + D + +K + Sbjct: 580 LEEERRLFYVGITRAQERLYLSYAEERETYGKREYTRPSRFLEDIPQDL-----LKEVGA 634 Query: 704 INKDEWIAYEWSTHHPENTPLERE 727 E + P+ E Sbjct: 635 FGDSEVRVLPQARPEPKPRTQLAE 658 >gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] Length = 789 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 115/806 (14%), Positives = 226/806 (28%), Gaps = 161/806 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ + + W L + ++ L + Sbjct: 31 GAGSGKTSVITRRVAWLLAEGHARPGEILAITFTNKAAGELKERVGALVGGRMWEMWVST 90 Query: 66 FSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQD--------EFIKIRDRF 114 F + L + PQ T S L + + + + + Sbjct: 91 FHSSCARLLRAEAGPQAGFDQNFTIYDADDSKRLLAMVAEELELDTNRFPPRMLAAKISD 150 Query: 115 NTYKMFKSTLASLTL-------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ A + + + Y+E +DF+DLI+ +LL+ +A Sbjct: 151 LKNELIAPEAALVGVEDPFDLVLGQVYRRYQERLALANAMDFDDLIMRAVELLQTNPEAA 210 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + H+L+DE QDT+ Q+ +IR L G + L VGD QSIY Sbjct: 211 Q---RWRGRFRHVLVDEYQDTNHAQYVLIRELVG-AGAGTQVGAETSALTVVGDSDQSIY 266 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 F GA + + +R + L ++RST +IL+ + V + + + Sbjct: 267 RFRGATIRNIEEFERDFPN--------ARTVLLEQNYRSTQNILSAANAVIAHNQGRREK 318 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW + Q + + A Sbjct: 319 R---------------------LW------TQAGDGQQIIGYVA--------DHEHDEAS 343 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I+ ++ + + D+ V R + + + + Sbjct: 344 FVATEITELVRSG----------AKHGDVAVFYRTNNASRVFEEAF----IRHAVPYRVV 389 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETV 466 D ++D++A R I + D +S ++ +P + +I +T Sbjct: 390 GGQRFYDRREVRDIIAYLRVIANPSDAVSLSRIINTPRRGLGDRAQAQIAAWAGSRGQTF 449 Query: 467 YE--------YIQKFANCGISKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQ 516 ++ + A + I L A + + + R Sbjct: 450 WDACQAAAGGAVAALAARSQRAVADFVAMIAGLRAELAAGDITVGELVARTVERSGYRAV 509 Query: 517 FISRFGNE---VIDVLDEFLNFTLRN-------------------------EQNSYSSLQ 548 + ++ LDE ++ + E + Sbjct: 510 LADSTDPQDGARLENLDELISVAVEYGELVAAREGGPVADGFAGELRVNLPEADENEGHA 569 Query: 549 ELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 +L LEQ + V +MT+HTAKGLE PVVF+ F H Sbjct: 570 KLRDFLEQVSLVADSDRLPEGGSQSGVVTLMTLHTAKGLEFPVVFVTGLEEGQFPHLRSL 629 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 + E RL YVG+TRA +QL + Sbjct: 630 GDPV----------------------------------ELAEERRLAYVGITRAREQLYV 655 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + + + + + ++ W + S + P Sbjct: 656 SRSITRTLRGSPMTNPPSRFLLEIPPHLVSWRR-----GGPDQAWAGFTRSDFGSVSAPR 710 Query: 725 EREETIKQLMDEQKIPKKLFSPIKND 750 + + + ++++ Sbjct: 711 AAGNAVSARKPAAERGARPRPNLRHE 736 >gi|77164502|ref|YP_343027.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707] gi|254433459|ref|ZP_05046967.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] gi|76882816|gb|ABA57497.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosococcus oceani ATCC 19707] gi|207089792|gb|EDZ67063.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] Length = 1146 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 155/976 (15%), Positives = 311/976 (31%), Gaps = 135/976 (13%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT-QCIEERFSLLSS 71 E + ++ L F S T + ++ + L + L+ Sbjct: 236 PESMLAEILELARF-------AASNVAATAPASPIQACRDLWNWPGIQAEALPHWLGLAQ 288 Query: 72 FFLTQKFTPQKNI-----ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS---- 122 LT + ++ + + ++ LK+ + + R + + Sbjct: 289 LLLTDEGEWRQQANKNIGFPAPSAARGQEERQFLKEQKRALLDCLARLEGEEALRRALHG 348 Query: 123 ---------TLASLTLAKYLN-------AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 T A L + L A + ++ +DF ++ L + + Sbjct: 349 LRFLPSASYTAAQWQLMEALFQLLPLAVAQLQLVFQEQGEVDFTEVAQRAVVALGEAEAP 408 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + +D +I H+L+DE QDTSL Q+ ++ LT + G+ RTL VGD QSI Sbjct: 409 TDLALALDYQIRHLLMDEFQDTSLSQYILLERLTLGWEAGEG-----RTLLVVGDPMQSI 463 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y F AE L+ + + L ++FRS I+ V++ F Sbjct: 464 YRFREAEVGLYLQA-----WWQGVGLLPLTPLTLSVNFRSQQGIVDWVNQSFRQILPVAQ 518 Query: 287 LSEDSTTT--IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 H VQ+ ++ Sbjct: 519 EIATGAVPYSQSHAFHPPLMAPAVQIHPFFEKGSLAE----------------------- 555 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 A+R+ + + ++ I +LVR R I L R + Sbjct: 556 -AKRVVHLVQQ-----------TRQAAPNSTIAILVRSRGHLAGIVPLLRE----AGVGF 599 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 + L ++DL+AL + + D LS++ +L++P + D++ + + Sbjct: 600 RALEIEPLGSRPIVQDLLALTKALFHLGDRLSWLTVLRAPWCGLTLADLYVL-AGEDKQA 658 Query: 465 TVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 V++ IQ+ A G + + + + + + SP + A G Sbjct: 659 AVWDRIQEDACIQGLSEEGRERLGRLRQVFAKALGERRRTSPRRQVEGVWLALGGPACVT 718 Query: 519 SRFG-NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E LD + E + +L+E +++L ++IMT+ Sbjct: 719 DSIALEEASVYLDLLEREAVAGEILDFRALEESVAQLFA------PPDKEADETLQIMTI 772 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQ--SKSRNN 630 H AKGLE V + G H + + DD + + +S+++ Sbjct: 773 HRAKGLEFDTVIVPGLGRPPRHESHQLLLWAERPTVHYPTGDDGALLLAPISGAGRSQDS 832 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 I + + ++ + E RLLYV +TRA +L + + + K + + ++ + Sbjct: 833 IYQYIKRLHEEKGEFENGRLLYVAVTRAKHRLHLFGQVDLDDTGKPKVPSKHSLLASLWP 892 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 + + + + + R T Q K + Sbjct: 893 AVKGKFEATALLQRETENREEGRDPGDSSISGFISRLSTQWQCPAPIAGVKADIEVLPEA 952 Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR--------K 802 + +E + + G ++H+ LQ+I Sbjct: 953 AS-------------ALDPIEFDWAGETARHIGTVVHRYLQIIAGEGPEHWSLARITALA 999 Query: 803 NFITSYCTKNAKLWPAKE--YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 + + + E + + + LE+P ++ + Y + ++ Sbjct: 1000 PALRQALMQQGVMPNEMENAIERAREVLRQTLEDPRGRWILASN-YRQARNEYSLSGVLN 1058 Query: 861 DIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSY 915 II ID+ I + + +I +YKT H E + QL Y ++ Sbjct: 1059 GRIIRAVIDRTFIDEAGVRWIVDYKTGVHEGGGREEFLNREQERYHPQLERYAALMALKV 1118 Query: 916 PN-KSLVCLLIYVSEP 930 P + + L Y Sbjct: 1119 PGTEKIRLGLYYPQIG 1134 >gi|258510684|ref|YP_003184118.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477410|gb|ACV57729.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 756 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 122/778 (15%), Positives = 234/778 (30%), Gaps = 143/778 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + + + +V + ++ + L + Sbjct: 34 GAGSGKTSVLTRRIAYLIAERRVPPWAILAITFTNKAAREMEERIERLVGPVASDIWTST 93 Query: 66 FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106 F + + L + ++ + I+ + + + L Sbjct: 94 FHAMCARILRRDIHHLGYTSAFTVLDAADQVSLVRRLMQEMNIDVRKFEPRAVLHAISQH 153 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++R + S + + YE ++N LDF+DL++ T +L +K Sbjct: 154 KNELRSAEKALDLAGSPYD--KMVGDVYLAYERRLRENQALDFDDLLVKTVELFRK---V 208 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + +HI +DE QDT+ Q+ +++ L E R L VGD QSI Sbjct: 209 PDVLAYYQHRFSHIHVDEYQDTNHAQYVLVKLLAE----------RRRNLCVVGDSDQSI 258 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R +I L ++RST IL + ++V + Sbjct: 259 YGWRGADIRNILEFQRDYP--------DARVIRLEQNYRSTGRILRIANQVIQHNQMRLE 310 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + LW ++ + + A Sbjct: 311 KN---------------------LWTDRGEGEKAKLFVAPD--------------ERVEA 335 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A I+ M+ + +D+ +L R + ++ I Sbjct: 336 DWVADEIARMVANGR----------EYRDVAILYRTNAQSRVLEEAF----LQRGIPYRI 381 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 + +KD++A R I + DD+SF+ ++ P + + K+ RH + Sbjct: 382 YGGLRFYERREVKDVIAYLRLIANPNDDVSFLRVVNVPKRGIGDTTLEKLAEYARHRGTS 441 Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ++E + S Q ++ I L F D +L R+ + Sbjct: 442 LFEAALHALEAGISKKAASALQSFVELIQTLQLQRAFLPLTDLTDELLDRSGYREALRAE 501 Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSS--LQELISELEQYPPTIKRAHS-------AN 568 E + LDEFL+ T +++ + L L + Sbjct: 502 RSLEAENRLENLDEFLSLTREFDEDGVPDGEMGALEQFLTHVALVSDADLPGGRPGRRED 561 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 +EV +MT+H AKGLE PVVFLV VF H+ Sbjct: 562 LDEVSMMTLHAAKGLEFPVVFLVGLEEGVFPHRRALDGGEELEEERRL------------ 609 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 YVG+TRA ++L + + + T + + Sbjct: 610 ----------------------CYVGITRAMERLYLTTCRSRMLFGERRSFTPSRFLSEM 647 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 +D + + + P Sbjct: 648 PASDIERAGEEDAMFGWGWRDARAGVRAPAHAVADAASGPRMSVPRSFGADLSVPYEP 705 >gi|163788705|ref|ZP_02183150.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1] gi|159875942|gb|EDP70001.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1] Length = 776 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 102/597 (17%), Positives = 188/597 (31%), Gaps = 127/597 (21%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + M + + Y + K +DF+DL++ TN+LL + + Sbjct: 162 ELMEADAMARRPR-----LGDIYKEYVDRCFKAGAMDFDDLLLRTNELLTRFP---NVLA 213 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + +IL+DE QDT+ Q+ ++R+L++ F + + VGD+ QSIY+F G Sbjct: 214 QYQNRFRYILVDEYQDTNHSQYLIVRALSDRF----------QNICVVGDDAQSIYAFRG 263 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A +L ++ + L ++RST +I+ + V + + Sbjct: 264 ANINNILNFQKDYD--------GVKVYRLEQNYRSTKNIVGAANSVIEHNKTKLDKIVWT 315 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 I V++ + + R +A Sbjct: 316 ANDI---------GEKVKVHRSLTDGDEG--------------------------RYVAS 340 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 TI + + + D VL R + I R I Sbjct: 341 TI---------WETKMNKQLHNSDFAVLYRTNAQSRAIEDALR----KRDIPYRIYGGLS 387 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYI 470 IKD+ A R IL+ D+ + ++ P + + ++ + T+Y+ I Sbjct: 388 FYQRKEIKDVTAYLRLILNSADEEALKRVINYPARGIGQTTVDRLVVAANVTGRTIYDVI 447 Query: 471 QKFA-------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 + N +K + + I + Q + D + ++ Sbjct: 448 KDIDNVTININNGTKNKLRDFVTLIESYKVMNQNANAFDLAEHVTKTSGLIRELNKDGTP 507 Query: 524 E---VIDVLDEFLNFTLRNEQNS------YSSLQELISELEQYPPTIKRAHSANHNEVRI 574 E +D + E LN + SL E + ++ + + V + Sbjct: 508 EGVTRMDNVQELLNGIKDFVEGQIELADAGDSLAEFLEDVALATDLDG--DKGDPDHVAL 565 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE VF+V +F Sbjct: 566 MTIHLAKGLEFGHVFIVGMEEDLFPS---------------------------------- 591 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YV +TRA Q + + K + + Sbjct: 592 AMSMNTRSELEEERRLFYVALTRAEKQAYLTYTLSRYRWGKLIDAEPSRFIEEIDEE 648 >gi|326390898|ref|ZP_08212449.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW 200] gi|325993046|gb|EGD51487.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW 200] Length = 711 Score = 287 bits (734), Expect = 7e-75, Method: Composition-based stats. Identities = 102/555 (18%), Positives = 189/555 (34%), Gaps = 112/555 (20%) Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 N LDF+D+II T +L K+ + ++ +I++DE QDT++ Q+ + L + + Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKY 239 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 R L VGD+ QSIY + GA+ K +L ++ + +I+L + Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYPE--------AKVIKLEQN 281 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +RST IL + V + + LW + Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEE 313 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 ++ + + + I N+ + +D +L R Sbjct: 314 GERIILCELENEREEAE-------FVIQEIINLKERENR---------SFRDFAILYRTN 357 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 + +I D IKD++A R +++ DD+SF ++ Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413 Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500 P I + + +++ I +K ++I ELI + Sbjct: 414 PKRGIGAATIEALEATALEKDTSLFFAIDDAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473 Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556 + IL ++ + + L+EFLN E+ + SL+ +S + Sbjct: 474 SEVINYILEETGYIEELEKEESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLSGITL 533 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 V +MT+H+AKGLE P+VF+V +F Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPIVFMVGMEEGIFPS---------------- 575 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + EE RL YVG+TR+ ++L + + KS Sbjct: 576 ------------------FKSFTDEYELEEERRLCYVGITRSKEKLYLTYARRRNLYGKS 617 Query: 677 NQRTWYDMVYDSFHN 691 ++ + + Sbjct: 618 QYSSYSRFISEIPER 632 >gi|330826182|ref|YP_004389485.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] gi|329311554|gb|AEB85969.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] Length = 796 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 103/690 (14%), Positives = 209/690 (30%), Gaps = 143/690 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K+ ++ + + + L YEE ++ V+DF +L++ + +LL Sbjct: 148 KQLAYFIAGCKEEGLRPRDVEVHDSDTRKKVELYQLYEEQCQREGVVDFGELMLRSFELL 207 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + D +R + HIL+DE QDT+ +Q+ ++ L D G+ + AVG Sbjct: 208 RDND---PVRVHYQRRFRHILVDEFQDTNRLQYAWLKQLAGDVVDGRLVTQGG--VIAVG 262 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + R R I+L ++RS ++IL + + + Sbjct: 263 DDDQSIYAFRGARVGNMQDFVREFDVR--------HQIKLEQNYRSYSNILDSANALIAH 314 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + + + + D Sbjct: 315 NSRRLGKNL---------------------------RTTQGPGEPVRVYEAPTDLAE--- 344 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I I ++ + +I VL R + +I + Sbjct: 345 -----AQWIVDEIRQLVREG---------PMPRSEIAVLYRSNAQSRVIESAL----FNA 386 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 + + IK +A R + + DD SF+ ++ P + ++ Sbjct: 387 SVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGIGARTLEQLQDAA 446 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 R ++++ + + + + + Q + +L + + + + Sbjct: 447 RGSGCSLHDAVSSVPGKAGANLGAFVAMVDVMREQTQGRNLRAIIGQVLESSGLLEHYRN 506 Query: 520 RF-GNEVIDVLDEFLNFTLRN--------------------------------------- 539 G + ++ LDE ++ Sbjct: 507 EKEGADRLENLDELISAAESFVTQEGFGRDAVALPLDETGAALTQSPASQGLDPNRPLLQ 566 Query: 540 ----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + ++ +L L + L A + V++MTVH +KGLE VF+ Sbjct: 567 QPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGME 626 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H++ + EE RL+YV Sbjct: 627 EGLFPHEN----------------------------------AMSDQGGLEEERRLMYVA 652 Query: 655 MTRASDQLIICKHSNT--SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 +TRA +L + + + N R+ + + + S D A Sbjct: 653 ITRARKRLYLSHAQTRLLHGQTRYNVRSRFFDELPEEALKWLTPRQQGFGSYAPDSRAAS 712 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + + +K Sbjct: 713 AYGAGARAGFGFNAAAFASPPVPPRKEEPA 742 >gi|86141573|ref|ZP_01060119.1| putative helicase [Leeuwenhoekiella blandensis MED217] gi|85832132|gb|EAQ50587.1| putative helicase [Leeuwenhoekiella blandensis MED217] Length = 773 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 115/726 (15%), Positives = 232/726 (31%), Gaps = 133/726 (18%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-ASLTLAKYLNAHYEEA 140 K + + K + ++ ++ I ++ F ++ ++ A + Y + Sbjct: 126 KEMGLDKDVYKYKQVHSRISSFKNSLITVKAYFQNPELMEADAMAKKPRLGEIYKEYVDR 185 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 K +DF+DL++ TN+LL + + K + +IL+DE QDT+ Q+ ++++L Sbjct: 186 CFKAGAMDFDDLLLRTNELLARFPE---VLAKYQKRFQYILVDEYQDTNHSQYLIVKALA 242 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + + + VGD+ QSIY+F GA +L +R + L Sbjct: 243 D----------RYQNICVVGDDSQSIYAFRGANINNILNFQRDYD--------DVQVYRL 284 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST +I+ + V + G Sbjct: 285 EQNYRSTKNIVEAANSVIEHNQTKLDKVV----------WTANDPG-------------- 320 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 P+ S D R +A I F + ++ D +L Sbjct: 321 ---PKIVVHRSLTDGEEG--------RYVASNI---------FETKMNQQLKHSDFAILY 360 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + + R +I IKD++A R +++ D+ + + Sbjct: 361 RTNAQSRAMEDALR----KREIPYRIFGGLSFYQRKEIKDVLAYLRILINPNDEEALKRV 416 Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN-------CGISKFQHVIKYIHELI 492 + P + ++ + +++E ++ + +K + + IH Sbjct: 417 INYPARGIGATTLDRLTIASKQYNRSIFEVMENIQHLDININNSTKNKLYNFVNMIHSFK 476 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSS 546 +++ + Q+ E I+ ++E LN ++ + Sbjct: 477 IMSENQDAFAVAETVARKTGLLQELKKDGTPEGIARIENIEELLNGMRDFVEGQKEIADA 536 Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L LE + + V +MT+H AKGLE P V++V +F Sbjct: 537 TGSLTEFLEDVALATDMDKEVDDIDRVSLMTIHLAKGLEFPYVYIVGMEEDLFPSGMSMN 596 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +S EE RL YV +TRA Q + Sbjct: 597 T----------------------------------RSELEEERRLFYVALTRAEKQAYLT 622 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 + K + DE+ I+ + + + P+ + L Sbjct: 623 YTESRYRWGKLIDAEPSRFIE---EIDEQFLDIQTPMDTYRYKPMIDSDIFGEPDKSKLR 679 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-----DNQTF 780 ++ + P + P + + + L P L L ++ F Sbjct: 680 LKKPVS------GTPPIMGKPSEEQLRKLRKLRPQAASAPQTDELNGKLQKGMHVEHSRF 733 Query: 781 NRGLII 786 RG ++ Sbjct: 734 GRGQVL 739 >gi|121604380|ref|YP_981709.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120593349|gb|ABM36788.1| ATP-dependent DNA helicase UvrD [Polaromonas naphthalenivorans CJ2] Length = 781 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 103/695 (14%), Positives = 209/695 (30%), Gaps = 141/695 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ ++ V+DF +L++ + +LL+ A IR + HILIDE QDT+ + Sbjct: 154 EIYDLYEQQCQREGVVDFGELMLRSYELLRDN---APIREHYQRRFRHILIDEFQDTNKL 210 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I+ L + ++ AVGD+ QSIY+F GA + R Sbjct: 211 QYAWIKMLAGQGADAMESMPGG-SVVAVGDDDQSIYAFRGARVGNMADFVREF------- 262 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS +IL + + S G + + G+ V Sbjct: 263 -NVTHQIKLERNYRSFGNILDSANALISHNTQRLGKNLSTEAG-------PGEPVRV--- 311 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + +S A+ + ++ Sbjct: 312 -------------------------YESASDFAEAQWFVDEVRQLVRDG----------A 336 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + K+I +L R + ++ + I + IK +A R + + Sbjct: 337 ERKEIALLYRSNAQSRVMESAL----FNASIPYRVYGGLRFFERAEIKHALAYLRLLDNP 392 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF+ ++ P I ++ ++++ + + + + Sbjct: 393 HDDTSFMRVVNFPPRGIGARTIEQLQDISNASGCSLHDGVSAVPGKAGANLGAFVAKLDV 452 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNS------ 543 + C+ + L+L + + + + G + ++ L E +N Sbjct: 453 IREQTAGCTLREIIELVLQQSSLVEHYTLDKDGQDRLENLAELVNAAESFVSQEGFGRDA 512 Query: 544 -----------------------------------YSSLQELISELEQYPPTI-KRAHSA 567 +L L++ L A Sbjct: 513 VALPVDELGAGLTQSPASQGLDEPLSEQLAPNLETGETLSPLVAFLTHAALESGDNQAQA 572 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + V++MTVH++KGLE VF+ +F H++ Sbjct: 573 GQDAVQLMTVHSSKGLEFDCVFITGLEDGIFPHENALN---------------------- 610 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687 EE RL+YV +TRA +L + ++ + Sbjct: 611 ------------DAGGIEEERRLMYVAITRARKRLYLSHSQTRMLHGQTRYNRKSRFFDE 658 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS-- 745 + + + + W R + + + F+ Sbjct: 659 LPEGALKWLTPRNRGFASGLGSGSGNWGGASNSGAGSARGDWAGGGFHSKSGSAERFASP 718 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780 P+ + P S ++ E + + Sbjct: 719 PVPAQKSAPSHGLKSGMNVFHAKFGEGRVEMLEGT 753 >gi|307610545|emb|CBX00132.1| DNA helicase II [Legionella pneumophila 130b] Length = 721 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 111/604 (18%), Positives = 198/604 (32%), Gaps = 121/604 (20%) Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +R + + T ++ + YE+ + + V+DF +L++ T++LL+ + Sbjct: 152 EGLRPQHINALHYGPTKTLVS----IYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + IL+DE QDT+ IQ+ IR L D + AVGD+ QSIY Sbjct: 206 -ILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTA----------VLAVGDDDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + + + + II L ++RSTA IL + + G Sbjct: 255 GWRGAKVENIQQFIHDF--------KDTQIIRLEQNYRSTAMILNAANALIHNNSTRMGK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 +LW + ++ S F+ L + AR Sbjct: 307 ---------------------ELW-------TAGSEGEKILVYSAFNELDE-------AR 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I + A +I VL R + ++ I+ Sbjct: 332 FVTERIGMELNQG----------ASADEIAVLYRSNAQSRVLEEAL----LRAGIAYRIY 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 D IKD +A R +++ DD +F ++ P E + ++ R E ++ Sbjct: 378 GGVRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSL 437 Query: 467 YEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QF 517 + + G I I +L + + + ++ + Sbjct: 438 WGASKGILQSTGLGQRGSLALAKFIDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKI 497 Query: 518 ISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRI 574 +D L E +N + E + L + S L + V + Sbjct: 498 KGDKSESRVDNLQELINAAKQFRYEYDEEEKLPLVNSFLAHASLESGELQADEHERSVHL 557 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE P+VFLV +F + Sbjct: 558 MTLHAAKGLEFPIVFLVGMEEGIFPGRQS------------------------------- 586 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + EE RL YVGMTRA +L++ + + + Sbjct: 587 ---IEEPGRLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLD 643 Query: 695 VKKI 698 ++ Sbjct: 644 EVRV 647 >gi|237709818|ref|ZP_04540299.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455911|gb|EEO61632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 796 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 99/680 (14%), Positives = 207/680 (30%), Gaps = 126/680 (18%) Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 A + + + Y E +++ +DF+DL++ T L + I K ++ ++L+DE Sbjct: 169 AKVPATRDIYRQYWERCRQSDAMDFDDLLLYTYMLFRDHPE---ICRKYAEQFRYVLVDE 225 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ Q ++ LT++ + + VGD+ QSIYSF GA +L+ ++ Sbjct: 226 YQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKFTQLY 275 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + + +L ++RST I+ + + S Sbjct: 276 --------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIKKEVFS------------- 314 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 + + + + + + +A I + + Sbjct: 315 ---------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSREH--- 349 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 D +L R + + R + IKD+++ Sbjct: 350 ------YSYNDFAILYRTNAQSRIFEEALR----KRSLPYKIYGGLSFYQRKEIKDVISY 399 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQKFANC 476 R ++ D+ +F +L P + + K I +++ Y Sbjct: 400 FRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLNINKG 459 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +K Q + + I + ++ +I+ + E + ++E + Sbjct: 460 MHTKLQGFRELVKSFIVEIPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENIEELI 519 Query: 534 N------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 N E N L + +SE+ + ++ +MT+H+AKGLE Sbjct: 520 NGMHDFCAIREEEGNENILLTDFLSEVSLLTDQD-NEKEEDAEKIILMTIHSAKGLEFKN 578 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF+V +F + EE Sbjct: 579 VFVVGLEENLFPSALSLNSY----------------------------------KELEEE 604 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA + + + K + + D + ++ + + + Sbjct: 605 RRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMARRIDE 664 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTK 765 + + + L E + P + PS Sbjct: 665 RASRFCREQNERASRFLFDESASQPSYGRSSSNLSGGQKSFFIGERPKAEIIRPSVPRNL 724 Query: 766 GKTNLESLLSDNQTFNRGLI 785 K L + ++ F G + Sbjct: 725 TKVGL---ATVSKPFAAGTL 741 >gi|297564148|ref|YP_003683121.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848597|gb|ADH70615.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 781 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 110/743 (14%), Positives = 212/743 (28%), Gaps = 133/743 (17%) Query: 1 LKNRFGLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59 L G+ E ++ + + + + L++ + Sbjct: 47 LMAARGVRPGEILAITFTNKAAAEMRERIQALLGVRAANSMWTMTFHSACVRILRREAAR 106 Query: 60 QCIEERFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 F++ S + K + ++ ++E + T+ Sbjct: 107 LGYPSSFTIYDSADSARLMQLVCKEMDLDPKRFPPKSFSAQVSNLKNELVDYD----TFA 162 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 T LA+ Y+ + +DF+DLI+ T +L + + + + Sbjct: 163 GQAQTEQEKKLAEA-YQLYQRRLHEAGAMDFDDLIMVTVNLFQ---MFPDVAEYYRRRFR 218 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 H+++DE QDT+ Q+ IR L + P L VGD QSIY+F GA + +L Sbjct: 219 HVMVDEYQDTNHAQYVFIRELVGVAEGSDTSVVPPAELCVVGDADQSIYAFRGATIRNIL 278 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 +R I L ++RST IL+ + V E + S Sbjct: 279 EFERDFP--------DARTILLEQNYRSTQTILSAANAVIDRNEGRPAKNLWS------- 323 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + P + + + A + I + Sbjct: 324 --------------------EQGDGPAIVGYVA--------DNEHDEAAFVVGEIDKLTD 355 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 T + + V R + + + + + I Sbjct: 356 DGT---------LTPSQVAVFYRTNAQSRVFEDVF----IRTGLPYKIVGGVRFYERKEI 402 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG 477 +D++A R + + ED +S +L P I E + +++ Sbjct: 403 RDVLAYLRVLANPEDTVSLRRILNVPKRGIGARAEESIELFAARERISFSRALRRVEEIP 462 Query: 478 ISKFQ------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDV 528 + + + EL +P + +L + + ++ Sbjct: 463 GMAARSVKAVLNFTALLEELEQTVPEGTPAEIVEAVLSKTGYLSELAESKDLQDESRVEN 522 Query: 529 LDEFLNFTLRNEQN----------------------SYSSLQELISELEQ-YPPTIKRAH 565 L+EF++ E +L + + + Sbjct: 523 LEEFVDVAREFEHTFAALLEEEPTEDGEEAAGAVDPGAPTLVDFLERISLVADTDQIPDE 582 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 V +MT+H AKGLE P VFL VF H Sbjct: 583 DDEGGVVTLMTLHAAKGLEFPAVFLTGMEDGVFPHTRTLG-------------------- 622 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 K+ EE RL YVG+TRA L + + + S + + Sbjct: 623 --------------DKTQLEEERRLAYVGLTRAQRLLYVSRAAVRSAWGTPSYNPASRFL 668 Query: 686 YDSFHNDERVKKIKLTNSINKDE 708 + + ++ + T + Sbjct: 669 DEIPSSLVDWRRAESTLAAPPSR 691 >gi|225849851|ref|YP_002730085.1| putative UvrD/REP helicase [Persephonella marina EX-H1] gi|225645334|gb|ACO03520.1| putative UvrD/REP helicase [Persephonella marina EX-H1] Length = 1021 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 154/949 (16%), Positives = 325/949 (34%), Gaps = 123/949 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ-ASQTQCIEERFSLLSSFFL 74 IY +LW + ++ I + + ++ +E Sbjct: 158 IYANLWKIERYRKESIEEREGYIKRLKEKALKLLDDFIKDHYRDFVDSQEFLKTDLKDIY 217 Query: 75 TQKFTPQKNIITQEINKKSPDL----------------KEKLKKSQDEFIKIRDRFNTYK 118 T+ + I E NK P L KEK+ + +D+ I + Sbjct: 218 TKIKQERFTQIKVEKNKNFPKLLKHKNVKNHRSLKSLDKEKVLELEDQLINTLEELRNNA 277 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 ++ + L L +EE K++N ++ + D+I+ + ++ + + + + Sbjct: 278 LYLNFLIILDNFDEFLQIFEEKKRENHLITYSDIILRSKEIFLRYPD---LLEEYRERFK 334 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 IDE QDT IQ ++IR L+E L GD KQ IY + A+ + Sbjct: 335 AFFIDEFQDTDQIQTDIIRMLSE-----------RSDLIVFGDPKQCIYEWRSADLYNYI 383 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 ++R L + +RS ++ + F + L+ D + Sbjct: 384 SFTEDFEER-----------TLNVCYRSGPSLVGFFNLFFVEND---FLNRDYSNRKVKE 429 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + + +L+ + + T + + ES +A +A I ++ Sbjct: 430 LYHLEEKYIPELFY---------SSEKSLDITDPVEIVKTESDTEPVA--LAEKIKQLLN 478 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + +DILVL R R T R I + + + + Sbjct: 479 SG----------YSPEDILVLFRSRSKTDRYIQELR----KSNIPFISFLSSNFYNSVEV 524 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478 ++ + + I D L+ + +LKSP+F+FS+ +I++I I Sbjct: 525 ITVLNILKLIQYPYDQLTLLKVLKSPVFSFSDKEIYQIR-------------NDLYIDRI 571 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTL 537 + + I L I + + + F + G + + L++ Sbjct: 572 PQLKE----IKRLEEIKDSLNISQILDRVYRDLPVLEIFSLYPDGKQKVANLEKLKFIAD 627 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 R E ++ L++ I LE + + + V++MT+H +KGLE+ VV + Sbjct: 628 RLEGENFQ-LRDFIQFLEDNRYKDEEDALITTDDRFVKVMTMHRSKGLEAKVVIIPGLSE 686 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 ++ + ++ D+ + I ++ ++ + +K+ E RLLYV Sbjct: 687 RINRSTNG-----FFTVEDEIMVRIRDDYNREVARTLNFDEEKVKRKIYLEEKRLLYVAF 741 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++LI+ + + + + K + I E + Sbjct: 742 TRAKERLILFYSGSKGYMNEIETVIERINGKEVTVYTQDRKPVSFKLEIKMTEPSGISNN 801 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-----------PSTIDT 764 + + ++ I + + K ++ I S ++ Sbjct: 802 IRYWSDIIKRQDRNIMEKLKLLKDEEEGRKEEFEKAVSAKIFTTVSALIDEKNEKSVVEE 861 Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + +SL + G+I+HK+L+ + +N I + + L Sbjct: 862 FQISEDDSLKERDIPVETGIIVHKILEYFSFPEDLKEAENEIEELFERFSGLITEDNRDK 921 Query: 824 L----LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878 + L + R + + S + E+ + + I G+ID + I Sbjct: 922 VRDISLEKLKRFIRSDAYKDISSSRIIFREMPFT----LKEGGRYIEGKIDIVYEKNGVI 977 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 ++ +YKT + + Q Y +++K +P++ + IY+ Sbjct: 978 YVGDYKTGRIKDE------EKYRPQERYYTEVIKKIFPDREMKFRFIYL 1020 >gi|261378597|ref|ZP_05983170.1| DNA helicase II [Neisseria cinerea ATCC 14685] gi|269144930|gb|EEZ71348.1| DNA helicase II [Neisseria cinerea ATCC 14685] Length = 735 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 100/582 (17%), Positives = 194/582 (33%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + + +FAVG Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I + +I VL R + +I Sbjct: 333 -----AQFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P I + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E A+ +K ++ I L + + IL + + ++ Sbjct: 434 NEQGITLWQAACNASAKAAKVAAFVRLIEALRNQVGQMPLSEIIVGILKDSGLTEHYQTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ +L E +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH +KGLE VFL F + Sbjct: 554 AGEKAVQLMTVHASKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|213962690|ref|ZP_03390951.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno] gi|213954685|gb|EEB66006.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno] Length = 783 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 195/615 (31%), Gaps = 127/615 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFEDL 152 K+ Q +++ T + + + + + Y E K +DF+DL Sbjct: 141 KQIQQRISSLKNNLITVRAYFNNPELVENDAIRKQPRFGEIYQEYVERCFKAGAMDFDDL 200 Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212 ++ TN+LL V + K +IL+DE QDT+ Q+ ++++L + F Sbjct: 201 LLKTNELLN---VYPEVLAKYQNRFQYILVDEYQDTNHSQYLIVKALADRF--------- 248 Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272 + VGD+ QSIY+F GA +L K + +L ++RST +I+ Sbjct: 249 -HNICVVGDDAQSIYAFRGANINNILNFKSDYPE--------AKEYKLEQNYRSTKNIVE 299 Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332 + V + +++ + S Sbjct: 300 AANSVIEHNKVRLDKVVF---------------------------TENEMGELIKVHRSP 332 Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 D+ R +A +I F N + + VL R + I Sbjct: 333 TDADEG--------RFVASSI---------FENKMQHQLANGKFAVLYRTNSQSRAIEDA 375 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R I IKD++A R I++ D+ + V ++ P E Sbjct: 376 LR----KRDIPYRIYGGLSFYQRKEIKDMLAYLRLIINPNDEEALVRIINFPARGIGETT 431 Query: 453 IFKICTQRHE-TETVYEYIQK--------FANCGISKFQHVIKYIHELIHIAQFCSPHDF 503 + K+ + ++++E + + K + I L + Q + + Sbjct: 432 MEKLTLAANHYKKSIFEIMYNVNKLPELHINSTTKQKLTDFVVMIFNLQALNQRANVFEV 491 Query: 504 FTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN---EQNSYSSLQELISELEQY 557 + Q+F E ++ ++E LN +++ S L LE Sbjct: 492 AEQVAKKTGLLQEFKKDGTPEGIAKMENIEEMLNGMKDFVIGQEDVADSTGSLAEYLEDV 551 Query: 558 PPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + + V +MT+H AKGLE P V++V +F Sbjct: 552 SLATDSDKEIGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFP----------------- 594 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + EE RL YV +TRA Q + Sbjct: 595 -----------------LAKSIQSRDELEEERRLFYVALTRAEKQAYLTYAERRYRFGNL 637 Query: 677 NQRTWYDMVYDSFHN 691 + + + Sbjct: 638 SDTEPSRFIEEIDER 652 >gi|255037536|ref|YP_003088157.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] gi|254950292|gb|ACT94992.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] Length = 755 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 107/656 (16%), Positives = 214/656 (32%), Gaps = 116/656 (17%) Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLII 154 + ++ +++ I D N + + A+ + L Y + +DF+DL+ Sbjct: 141 VFNRISGAKNRLISADDYINNAIIQQDDEAAKMKEIGRLYKTYATRCFQANAMDFDDLLF 200 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 NTN L + + YK + H+++DE QDT++ Q+ + R L+ R Sbjct: 201 NTNVLFRDFPD---VLYKYQHKFQHVMVDEFQDTNVSQYLITRKLSA----------VHR 247 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + VGD+ QSIY+F GA + +L ++ +I+L ++RST+ I+ Sbjct: 248 NIVVVGDDAQSIYAFRGANIENILNFEKDFP--------DVRVIKLEQNYRSTSTIVNAA 299 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + V + ++ H + + + + + + Sbjct: 300 NSVIARNKSQLEK---------HTFTSNEEGSLIDVIKAGSDNEEG-------------- 336 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 R IA I F ++ ++ + +L R + R Sbjct: 337 ------------RLIATAI---------FEEKMQKALRNEHFAILYRTNAQSRSFEEALR 375 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 L I IKDL+A RF ++Q D+ +F ++ P + + Sbjct: 376 KL----GIKYRIVGGQSFYQRKEIKDLLAYLRFTVNQRDEEAFKRIINLPKRGIGDTTVA 431 Query: 455 KI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLIL 508 KI T +++ + G + I+ LI + ++ + I Sbjct: 432 KIAVTASENNVAIWDVVANINQYGTGRTIAPIEGFGTLIKSFKILVEEGKDAYEISSHIA 491 Query: 509 GAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTIK 562 A ++ E + + E LN ++ SL + + + Sbjct: 492 KASGILRELYEDKTVEGLSRYENVQELLNGIKEFVDSDETEDKSLSAFLQSVSLLTNADE 551 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + +H+ V +MT+H+AKGLE VF+V +F + + Sbjct: 552 PDDNNDHDRVTMMTIHSAKGLEFRNVFIVGLEEDLFPSQMML------------------ 593 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 + EE RL YV +TRA +L + + Sbjct: 594 ----------------ESRQDLEEERRLFYVAITRAEKKLSFSYAESRYQWGRLKMCEPS 637 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 + + V K+ + ++ + + + Sbjct: 638 RFLLEVEQKYLNVNKMVQSALERDTTPPVTTFARNLVQRKTEAKPAVTAATSHVPS 693 >gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 828 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 99/639 (15%), Positives = 189/639 (29%), Gaps = 141/639 (22%) Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + K L + HY++ + LDF+DLI T +L+ + Sbjct: 179 VDPDQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQ---AFPQV 235 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS--PRTLFAVGDEKQSIY 227 + H+L+DE QDT+ Q+ ++R L G++ P L VGD QSIY Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIY 295 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA + + +R I L ++RST +IL+ + V S + Sbjct: 296 AFRGATIRNIEEFERDYP--------DARTILLEQNYRSTQNILSAANSVISKNTGRREK 347 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW + + + + A Sbjct: 348 R---------------------LW-------TDSGVGELITGYVADNEHDE-------AS 372 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I ++ + + D+ V R + + + + Sbjct: 373 FVASEIDKLVDSG---------DAKFGDVAVFYRTNNSSRALEEIF----IRLGVPYKVV 419 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 + ++D++A R + ++ D +S +L +P + + + Sbjct: 420 GGVRFYERKEVRDIVAYLRVLANENDTVSLRRILNTPRRGIGDRAEACVAVHSEQRGISF 479 Query: 467 YEYIQK--------FANCGISKFQHVIKYIHELIHIAQFCS------------PHDFFTL 506 E ++ ++ + L + + D Sbjct: 480 AEALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVLLPPETTADDVVPDQLGDIGDVVEA 539 Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--------------------EQNS 543 +L R + + + +D L+E ++ ++ Sbjct: 540 VLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDG 599 Query: 544 YSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + LE+ + V +MT+HTAKGLE PVVF+ F H Sbjct: 600 EPDPGSLAAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHM 659 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 E RL YVG+TRA + Sbjct: 660 RALGDPT----------------------------------ELSEERRLAYVGITRARQR 685 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 L + + S + Q + + + ++ Sbjct: 686 LYLTRAVMRSAWGQPIQNPESRFLQEIPSDLVHWRREDP 724 >gi|89901667|ref|YP_524138.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] gi|89346404|gb|ABD70607.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] Length = 1165 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 160/952 (16%), Positives = 322/952 (33%), Gaps = 105/952 (11%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77 D + + + T K L+ A + + F+ L LT K Sbjct: 281 DDFLRDQPQRWQILLDAAAALGRASAKTFAAKGVELEMALSSGDLSAAFAAL----LTDK 336 Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137 P+K E ++++QD +++ + + L + L + Sbjct: 337 DAPRKFSEKIAG-------IEAVREAQDLVLRVVAARLQHAAWTYQQRMARLTRALLKEF 389 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 K+++ +D D+ +L + W++ ++D I H+LIDE QDT+ +QW+ ++ Sbjct: 390 AALKREHGWVDMNDVERAALVMLSDPVLCGWVQERLDARIKHLLIDEFQDTNPLQWQALK 449 Query: 198 SL-----TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 S ++ +F VGD KQSIY F AEP+ K G Sbjct: 450 SWLSGYAGTGGGASGGAGATAPRVFIVGDPKQSIYRFRRAEPQVFKAA-----KAFVRDG 504 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++ + R+ ++ VV+ V + A G H +S +L Sbjct: 505 LNGDLLSCDHTRRNATGVIAVVNAVMTQAVQADGYEGFRA----HTTSASELGLVCKLPP 560 Query: 313 QVVSQ----------HDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGT 359 + W D LP+E+ ++ AR+ A+ I+ + + Sbjct: 561 IARPERLAGAASSGDETEGGGTASAGWRDSLDTPRELPEETLRTLEARQAAHWIAQQLAS 620 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + R +QA D++VL RKR + R L +I ++ L D ++ Sbjct: 621 AETPDT-EGRGLQAADVMVLSRKRAGLLPLQLELRKLHIAAQI----GEKTNLIDCCEVQ 675 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479 DL+AL ++S DLS +LKSPLF+ ++ + ++ F S Sbjct: 676 DLVALLDVLVSPRHDLSLARVLKSPLFDMTDAALVQLAQAVRAQSQPPADGSWFDVLQKS 735 Query: 480 KF-----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLD 530 + + + + PHD I +F + D L Sbjct: 736 ELSTQDGRGLAACLMRWKGWLDQWPPHDALQAIYFDGDVLARFAAAAPASQRDAVLANLT 795 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 L +L+ + +S+ + + + N VR++TVH AKGLE+ VV L Sbjct: 796 ALLGMSLQLDGGRFSTPYAFVR--ALKGGGVLAPAAVNPQAVRLLTVHGAKGLEAQVVLL 853 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 +DT + + + + P P +++ ++ + Q E Sbjct: 854 LDTDTPERNADTMGVLIDWPGEAAWPSKFVFLASESQPPACAVPTLEAERLERQREELNA 913 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710 LYV +TRA L I + + ++S + D+ + L +++ + + Sbjct: 914 LYVALTRARRTLAISSIAPYRSAERSWWQRLSDLAQPAVPAGAAALAAPLPDAVTVADAV 973 Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 Y + + I + + + + Sbjct: 974 FYIKELPL----------------------------APVEYRQVAIKSEANLGGSRGGDD 1005 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 + +D + G +H+LL+ + ++ R Sbjct: 1006 ANADADALSARLGKAMHRLLEW-GDATPANTAACAREFA------LTPEQGAQAAAMAAR 1058 Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-----ISQQNIFIFEYKT 885 +L+ A + ++ + + + D++ + ++ +YK+ Sbjct: 1059 ILQGE-GAWAWDNTRLAWQGNEIELLYQGQCLRL----DRLVQRTDAQHAGHWWVLDYKS 1113 Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 P E + +AQL Y ++ YP+ + + + + + + Sbjct: 1114 -APAPHEQAEL----LAQLRDYRAAVQAIYPDAVVKAAFL-TAHGALIEVNE 1159 >gi|54297755|ref|YP_124124.1| DNA-dependent helicase II [Legionella pneumophila str. Paris] gi|148359389|ref|YP_001250596.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str. Corby] gi|296107435|ref|YP_003619135.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella pneumophila 2300/99 Alcoy] gi|53751540|emb|CAH12958.1| DNA helicase II [Legionella pneumophila str. Paris] gi|148281162|gb|ABQ55250.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str. Corby] gi|295649336|gb|ADG25183.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella pneumophila 2300/99 Alcoy] Length = 721 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 111/604 (18%), Positives = 199/604 (32%), Gaps = 121/604 (20%) Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +R + + T ++ + YE+ + + V+DF +L++ T++LL+ + Sbjct: 152 EGLRPQHINALHYGPTKTLVS----IYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + IL+DE QDT+ IQ+ IR L D + AVGD+ QSIY Sbjct: 206 -ILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTA----------VLAVGDDDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + + + + II L ++RSTA IL + + G Sbjct: 255 GWRGAKVENIQQFVHDF--------KDTQIIRLEQNYRSTAMILNAANALIHNNSTRMGK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 +LW + ++ S F+ L + AR Sbjct: 307 ---------------------ELW-------TAGSEGEKILVYSAFNELDE-------AR 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I + A +I VL R + ++ I+ Sbjct: 332 FVTERIGMELNQG----------ASADEIAVLYRSNAQSRVLEEAL----LRVGIAYRIY 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 D IKD +A R +++ DD +F ++ P E + ++ R E ++ Sbjct: 378 GGVRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSL 437 Query: 467 YEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QF 517 ++ + G I I +L + + + ++ + Sbjct: 438 WDASKGILQSTGLGQRGSLALAKFIDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKI 497 Query: 518 ISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRI 574 +D L E +N + E + L + S L + V + Sbjct: 498 KGDKSESRVDNLQELINAAKQFRYEYDEEEELPLVNSFLAHASLESGELQADEHERSVHL 557 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE P+VFLV +F + Sbjct: 558 MTLHAAKGLEFPIVFLVGMEEGIFPGRQS------------------------------- 586 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + EE RL YVGMTRA +L++ + + + Sbjct: 587 ---IEEPGRLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLD 643 Query: 695 VKKI 698 ++ Sbjct: 644 EVRV 647 >gi|256380499|ref|YP_003104159.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827] gi|255924802|gb|ACU40313.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827] Length = 781 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 96/616 (15%), Positives = 186/616 (30%), Gaps = 128/616 (20%) Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + + + Y+ ++ +DF+DLI+ T +LL+ + + Sbjct: 170 AHAAEVAGNDLERRVAEVYGAYQRRLVESNSMDFDDLIMRTVELLQNNPA---VAEHYHR 226 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 H+L+DE QDT+ Q+ ++R L G P L VGD QSIY+F GA + Sbjct: 227 RFRHVLVDEYQDTNHAQYTLVRELVGTGSDGV----PPAELCVVGDADQSIYAFRGATIR 282 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 ++ +R + + + L ++RST ILT + V S + + S Sbjct: 283 NIVEFERDYPQ--------ATTVLLEQNYRSTQTILTAANAVISRNPDRRDKRLWSDL-- 332 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + ++ + + A +A I Sbjct: 333 --------------------------GDGEKIVGYVADNEHDE-------AAFVAREIDR 359 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 ++ + +I V R + + + + + Sbjct: 360 LVDGGDANN---------GEIAVFYRTNNQSRVFEEIF----IRLGLPYKVVGGVRFYER 406 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA- 474 ++D +A R + + +D +S +L P + + T + + A Sbjct: 407 REVRDALAYLRVLSNPDDTVSLRRVLNVPKRGIGDRAEACVATYAERERVSFATALRAAV 466 Query: 475 --------NCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE- 524 ++ + EL + +L R + + + Sbjct: 467 AGKVPLLNPRSQRAISGFVELLDELRAGVERGDDVASVLEEVLDRTAYRAELEASDDPQD 526 Query: 525 --VIDVLDEFLNFTLRNEQNS------------------YSSLQELISELEQYPPTIKRA 564 ++ L+E + + S SL + + + Sbjct: 527 HTRVENLNELVTVAREFGELSAVEPDGEPVEEPDPGQPVAGSLDAFLERVSLVADADQVP 586 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + + V +MT+HTAKGLE PVVF VF H Sbjct: 587 DAESDGVVTLMTLHTAKGLEYPVVFCTGWEDGVFPHTRALGDP----------------- 629 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 + E RL YVG+TRA +L + + S + Sbjct: 630 -----------------AELSEERRLAYVGITRAQQRLYLSRALVRSAWGQPAANPASRF 672 Query: 685 VYDSFHNDERVKKIKL 700 + + + K+ + Sbjct: 673 LDEIPADLLEWKRAEP 688 >gi|59710675|ref|YP_203451.1| DNA-dependent helicase II [Vibrio fischeri ES114] gi|59478776|gb|AAW84563.1| DNA-dependent ATPase I and helicase II [Vibrio fischeri ES114] Length = 733 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 117/691 (16%), Positives = 224/691 (32%), Gaps = 132/691 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + + + L S Sbjct: 30 GAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTNKAAAEMRGRIEELMHGSAGGMWNGT 89 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111 F + L F Q+ ++ + I ++ D K + FI + Sbjct: 90 FHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKAQNLDDKNWPARQAAWFINGK 149 Query: 112 --DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + +++ + + Y+EA + ++DF ++++ ++LL+ I Sbjct: 150 KDEGLRPHQINSFNDPITQTWLKVYSAYQEACDRAGLVDFAEILLRAHELLRDH---KHI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R HIL+DE QDT+ IQ+ +R + S + VGD+ QSIY + Sbjct: 207 REHYQARFKHILVDEFQDTNNIQYAWLRMMAG----------SDCDVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + I L ++RSTA+IL +++ S G Sbjct: 257 RGAQIENIQKFLDEF--------VGAKTIRLEQNYRSTANILNAANELISNNTERMGKK- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW S S ++ L + AR Sbjct: 308 --------------------LW-------TEGVEGDLISIYSAYNELDE-------ARFA 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D L R + ++ + Sbjct: 334 VGKIKEWRDNGGALE----------DSAFLYRNNAQSRVLEEAL----IQAGLPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468 + IKD ++ R + ++ DD +F ++ +P + + + R T+++ Sbjct: 380 MRFFERQEIKDALSYLRLMNNRNDDAAFERVVNTPTRGLGDKTLETVRFAARERGATMWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 I+ I+ L + C H+ ++ + + G Sbjct: 440 ASIALIEEQVLPGRAAGALSRFIELINALEDDTRDCRLHEQTDQVIKSSGLFAMYEQEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + I+ L+E + T + E+ + +L + L + + V++MT+ Sbjct: 500 EKSKARIENLEELVTATRQFEKPEEAEEMTDLTAFLTHAALEAGEGQADEFEDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+VF+V +F + Sbjct: 560 HSAKGLEFPLVFMVGVEEGMFPSQMS---------------------------------- 585 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA ++L I Sbjct: 586 AEEAGRLEEERRLCYVGMTRAMEKLYITYAE 616 >gi|256112427|ref|ZP_05453348.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 3 str. Ether] Length = 440 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 129/434 (29%), Positives = 196/434 (45%), Gaps = 25/434 (5%) Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 EF N+ L E+ LQ + LE P IKR +EVRIMTVH AKGLE VVFL Sbjct: 1 EFQNYALSAERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFL 60 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VD GS V++ K+ D P + +W P S + + I+ LK +EEY Sbjct: 61 VDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYR 120 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RLLYVGMTRA D+LIIC + + + TW+ +V D+ +T Sbjct: 121 RLLYVGMTRAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV----- 171 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 A P + EE ++P P+K + P L PS + Sbjct: 172 --AARRYRKTPRSFIEINEEDQAGATSLPQLPHDYRQPMKAEPGLPRPLAPSGASALIEA 229 Query: 769 NLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 + E L RG IH LLQ + + KR++ Y + A W Sbjct: 230 DEEPPLDLSSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADW 289 Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876 P E S+ +L++P + S EV+V G I+ +D +SG+ID+IS+ + Sbjct: 290 PDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES 349 Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936 + I +YKT+ P+ +E +P + AQL++Y ++L+ YP + + L++ P + ++P Sbjct: 350 RVLIVDYKTNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVP 409 Query: 937 QNKLNKAFAEISTK 950 L+ A + Sbjct: 410 DAVLDDAMGALKDT 423 >gi|227502912|ref|ZP_03932961.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] gi|227076334|gb|EEI14297.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] Length = 1059 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 134/1019 (13%), Positives = 269/1019 (26%), Gaps = 158/1019 (15%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + L + S + T ++ E+ ++ Sbjct: 114 TVATYDSYAGELVREYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKLSDEKTLGSITE 173 Query: 72 FFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 L ++ + I + + D + + + + + + + Sbjct: 174 VLLKITSDMDNSLKDPDDIAEFARDFRADIDNLEKAPRTKGEYSKDLQKYINVQDLRVQY 233 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 L + + + V+ F + + L ++ + + Q +++DE QDTS Sbjct: 234 VPLIEELKRTQAEQQVITFGEQMSVAARLAQEHPA---VGKQQAQRYRVVMLDEYQDTSY 290 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q ++RSL ++ AVGD Q+IY + GA + + + Sbjct: 291 AQRVLLRSLF-------GGEHKDISVTAVGDPMQAIYGWRGATSENLTAFVEDFPQ---A 340 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 G +L S+R+ + L + + V + D H+ G ++L Sbjct: 341 DGTPAPKDQLTTSWRNPSGALELANSVAAGVFGGGPRPVDELHAAPHK-----GEGEIEL 395 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + IA + Sbjct: 396 GYFASEDEE--------------------------HEFIAQKLKQQWDAREGDGFRA--- 426 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 VLVR + T I + + N L I+DL+AL ++ Sbjct: 427 ------AVLVRTNRQTAAIAAA----LDAVDVPNEINGLGGLLWQPEIQDLVALATMLVR 476 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----------- 479 ED + + + P+ DI + ++ + ++ Sbjct: 477 PEDAQAALRIFAGPICGLGMGDIQALAARQKNLAGAKQERLQWEEGMDPEEYLRAQLAQL 536 Query: 480 ------------------------------KFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 + + V + L + D F I Sbjct: 537 TAEGPDQTVGLADALADLGERDRYTPQGLARMEEVSAKLRYLRTYSLSKPLSDLFADIEA 596 Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565 R + ++R LD+F + SL L+ LE Sbjct: 597 IFNIRTEVLARGSAGGATHLDKFADIVAGF---HGDSLYALLDYLELAREHEDGLELGEV 653 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ- 624 A+ + V+IMTVH AKGLE V++V S + + + + + D P Sbjct: 654 PASTDRVQIMTVHKAKGLEWEHVYVVHADSSSYKAQAETFLSKIEKVPGDNDYIEVSPDA 713 Query: 625 --SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 + + EE RL YV +TR L + + K+ + + Sbjct: 714 VTRSEFEKACKAFLDDDRAHNAEEAARLFYVALTRTESTLTVTGSGTNNRTGKAKKGPYE 773 Query: 683 DM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + V + +E V+ + + + + L E + + Sbjct: 774 YLERLKETFPQYVGEWTVPEEPVETSAHAAESGLFPALEADPDSLAGADAVLAAMEDLPE 833 Query: 733 LMDEQKIPKK------------LFSPIKNDINEPYILNPST--------IDTKGKTNLES 772 L + D+ P L S + + Sbjct: 834 LSHGETFELWEQDAGALIEEYKSLQQPVVDVELPSELTASDMVALGSDPLQFARRQRRPV 893 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 N RG H L+ +R + E +L L Sbjct: 894 PFKPNSYAKRGTAFHAWLE--------ERFGSPALLGEEELPGIDEPEDFDLEELKESFL 945 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQ 891 + V ++ GR+D + + + ++KT Sbjct: 946 NSEWAQ-------RQPDFVEAPFEITIGSAVVRGRMDAVFRLADDTWMVVDWKTGRPPKG 998 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 QL++Y + + + + YV + F + + Sbjct: 999 TAMEAA---KIQLAVYAEAWRRIHGGDKIRAAFHYVHDGYTFEPDTLAQGEELRSLLES 1054 >gi|209693834|ref|YP_002261762.1| DNA-dependent helicase II [Aliivibrio salmonicida LFI1238] gi|208007785|emb|CAQ77907.1| DNA helicase II UvrD [Aliivibrio salmonicida LFI1238] Length = 734 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 114/694 (16%), Positives = 226/694 (32%), Gaps = 132/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + + + L S Sbjct: 30 GAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTNKAAAEMRGRIEELMHGSAGGMWNGT 89 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111 F + L F Q+ ++ + I ++ D K + FI + Sbjct: 90 FHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKAQNLDDKNWPARQAAWFINGK 149 Query: 112 --DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + +++ + Y+EA ++ ++DF ++++ ++LL+ +I Sbjct: 150 KDEGLRPHQINSFNDPIAETWLKVYRAYQEACDRSGLVDFAEILLRAHELLRDH---QYI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 HIL+DE QDT+ IQ+ +R + S + VGD+ QSIY + Sbjct: 207 CEHYQARFKHILVDEFQDTNNIQYAWLRMMAG----------SDCKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R I L ++RSTA+IL +++ S G Sbjct: 257 RGAQIENIQRFLNEF--------VGAKTILLEQNYRSTANILNAANELISNNTERMGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + + S S ++ + + AR Sbjct: 307 -------------------ELW-------TEDADGELISIYSAYNEMDE-------ARFA 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D L R + ++ + Sbjct: 334 VGKIKEWRDNGGALE----------DTAFLYRNNAQSRVLEEAL----IQAGLPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IKD ++ R + ++ DD +F ++ +P + + + R T+++ Sbjct: 380 MRFFERQEIKDALSYLRLMNNRNDDAAFERVVNTPTRGLGDKTLETVRLAARERGATMWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 ++ I+ L + C H+ ++ + + G Sbjct: 440 ASIALIEEQVLPGRAAGALGRFVELINALEDDTRDCRLHEQTDQVIKSSGLFTMYEQEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + I+ L+E + T + ++ + +L + L + V++MT+ Sbjct: 500 EKSKARIENLEELVTATRQFDKPEEAEEMTDLTAFLTHAALEAGDGQADEFEDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+VF+V +F + Sbjct: 560 HSAKGLEFPLVFMVGVEEGMFPSQMS---------------------------------- 585 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVGMTRA ++L I Sbjct: 586 AEEAGRLEEERRLCYVGMTRAMEKLYILYAETRR 619 >gi|56461651|ref|YP_156932.1| DNA-dependent helicase II [Idiomarina loihiensis L2TR] gi|56180661|gb|AAV83383.1| Superfamily I DNA helicase, UvrD [Idiomarina loihiensis L2TR] Length = 723 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 117/690 (16%), Positives = 227/690 (32%), Gaps = 131/690 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + + + L +S Sbjct: 30 GAGSGKTRVLVHRIAWLIQERQYSPFSILAVTFTNKAAAEMRGRVEQLVGSSVRGMWIGT 89 Query: 66 FSLLS---------SFFLTQKFTPQKNIITQEINKKS------PDLKEKLKKSQDEFIKI 110 F L+ L Q F + Q + K+ D + K++Q Sbjct: 90 FHGLAHRLLRAHYMDVGLPQNFQIIDSDDQQRLIKRLIKSLNLDDKRWPAKQAQWYINGK 149 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +D + ++ + K + Y+E+ + ++DF +L++ ++LL+ + +R Sbjct: 150 KDEGLRPQHIETYDPTEQTLKEIYTLYQESCDRAGLVDFAELLLRAHELLRNNRI---VR 206 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ IQ+ IR L S ++ VGD+ QSIY + Sbjct: 207 EHYQNRFRHILVDEFQDTNSIQYAWIRLLAG----------SQNSVTIVGDDDQSIYGWR 256 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+ + + + + I L ++RST+ IL + V S G Sbjct: 257 GAKVENIHQFLSDFE--------GSETIRLEQNYRSTSTILRAANSVISNNSGRLGK--- 305 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 LW + + S + F+ + + AR I Sbjct: 306 ------------------DLW-------TDGNDGEPISLYAGFNEMDE-------ARYIV 333 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +D +L R + ++ ++ Sbjct: 334 ARIEEWRDQGGSL----------QDSAILYRSNAQSRILEEAL----LHARVPYRIYGGL 379 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 D IKD +A R + +++DD + ++ +P + I R E++++ Sbjct: 380 RFFDRQEIKDALAYLRILGNRDDDAAIERVINTPTRGIGNRTMDMIRQAAREREESLWQA 439 Query: 470 ------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 ++ A + + +I L + S ++ + + G Sbjct: 440 AKYMVNEKQLAGRARNAVGSFLDFIENLDDETEEFSLGRLSDEVIKKSGLMAMYEAEKGE 499 Query: 524 EVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + + L E + + + L + L + + V++MT+H Sbjct: 500 KAETRVENLKELVTACENFTLDDDEEDMTPLNAFLAHASLEAGEEQADEYQDAVQLMTLH 559 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P+VF+ +F + Sbjct: 560 SAKGLEFPLVFMTGVEEGLFPSQQSMDEPG------------------------------ 589 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 EE RL YVGMTRA ++L++ Sbjct: 590 ----RLEEERRLCYVGMTRAMEKLVLTYAE 615 >gi|297184355|gb|ADI20471.1| superfamily I DNA and RNA helicases [uncultured alpha proteobacterium EB080_L58F04] Length = 781 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 120/743 (16%), Positives = 219/743 (29%), Gaps = 134/743 (18%) Query: 48 KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS- 103 + A+ L+Q+ + F + L + + + + + + LK+ L S Sbjct: 94 RVAELLRQSVEGMPWMGTFHSICVKLLRRHAELVGLKSSFTILDTDDQIRLLKQLLVASD 153 Query: 104 -------QDEFIKIRDRFNTYKMFKSTLASLTL------AKYLNAHYEEAKKKNCVLDFE 150 + I D++ + + A A Y+E K +DF Sbjct: 154 VDDKRWPARQLAGIIDQWKNRAWGPENVPAAEAGAFNHRATEFYAAYQERLKALNAVDFG 213 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL+++ + + + + + Q +IL+DE QDT++ Q+ +R L Sbjct: 214 DLLLHVVKIFQTQPD---VLQQYQQWFKYILVDEYQDTNVAQYLWLRLLAG--------- 261 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIY + GAE +L+ ++ + L ++RST I Sbjct: 262 -GHKNICCVGDDDQSIYGWRGAEVGNILKFEKDF--------AGAKTVRLEQNYRSTPHI 312 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 L V S G +LW + + W Sbjct: 313 LAAASAVISGNTGRLGK---------------------ELW---TDLDEGEKLRLIGHWD 348 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 + AR I I + + +LVR Sbjct: 349 A-----------EEEARWIGDEIEALQQGSRGLDK-----FSPDQMAILVRASHQMRAFE 392 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + + ++D MA R + S DDL+F ++ +P + Sbjct: 393 DRF----LTIGLPYRVIGGPRFYERMEVRDAMAYFRLVCSPSDDLAFERIVNTPKRGLGD 448 Query: 451 DDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVIKYIHELI--HIAQFCSPH 501 KI + E + + + G + ++ + Q S Sbjct: 449 KAQQKIQSMARQEGIALTEGARLLLEAKGLSGKGALELGRLVDGLGRWRKTMQDQSISHQ 508 Query: 502 DFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + +IL + + + E + L E + + E L LE Sbjct: 509 ELAEVILDESGYTEMWQNDKTPEAAGRLENLKELVKALDQFEN--------LQGFLEHVS 560 Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + +V IMT+H AKGLE P VFL +F + Sbjct: 561 LVMDNERDEAGEKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRS--------------- 605 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + + EE RL YVG+TRA IC N + Sbjct: 606 -----------------MDETGQRGLEEERRLAYVGITRAERLCTICFAGNRRIFGQWQS 648 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 + + + V EN + + Q Sbjct: 649 SMPSRFIDELPADHVDVLTPPGLYGGAYGMQSEASNLAVDIENIGGGYASPGWKRLQSQS 708 Query: 739 IPKKLFSPIKNDINEPYILNPST 761 + + P ++ + S+ Sbjct: 709 AERPISQPRESAHMTIDAVAVSS 731 >gi|319788731|ref|YP_004090046.1| UvrD/REP helicase [Ruminococcus albus 7] gi|315450598|gb|ADU24160.1| UvrD/REP helicase [Ruminococcus albus 7] Length = 1231 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 139/918 (15%), Positives = 276/918 (30%), Gaps = 138/918 (15%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R N + K +A L K + + K + +DF D+ + T +LL + + R + Sbjct: 336 RDNLVLVQKLFMAVCRLEKRVEEVSYDIKLEKNAVDFGDIELMTKNLLVRETDDGFERTE 395 Query: 173 IDQEIN------HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + +EI I+IDE QD + IQ + +++++ + F VGD KQ+I Sbjct: 396 LAEEIRSGGAYKLIVIDEYQDVNDIQEMIFKAVSD----TDDLTVMGSNTFIVGDMKQAI 451 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ- 285 Y F P+ + Q+ +K I L +FRS +++ + + +F ++ Sbjct: 452 YGFRKTNPELFKNCIELAQRY--GEEKKLEHIGLQKNFRSRGEVIALSNFIFETLMSSGC 509 Query: 286 -GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + D + + + + ++ D+ ++S + Sbjct: 510 GQVDYDGSERLEAGAVYTDRSCPAEV--------------------MLVDAPDEKSGIPL 549 Query: 345 LARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 R A I MI + G R + D +LV + T + Sbjct: 550 EFRCTAKRIREMIDSGEPVCDGGVDRPCRQSDFCILVNTNDNIRQATDALSA----AGLR 605 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC------ 457 D I + L R + + +D+S ++ SP+ F+ D++ I Sbjct: 606 AFCEDTEGYIKSREISLALDLLRCVDNPMNDISLTAVMMSPVMGFTPDEMVHIRLKCKAA 665 Query: 458 ----------------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501 ++ E +Y+ ++ K + + I L + + S Sbjct: 666 NPKKPDHIYQILAGASREKGTDEKYAKYVDMGSDVLQEKCRKAFEMIESLRYCSMSMSLE 725 Query: 502 DFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560 I A + L L + E++ + + ++ Sbjct: 726 KLIRRIFNAADLMALTSIYLDSAKKRANLRLLLQYAGDYERSGNEGVTGFLRYIDSVSGN 785 Query: 561 IK-----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 K + +A + V + T H +KGLE P VF+ + + + + ++ Sbjct: 786 DKAFRNAVSVTAGGDSVNVKTYHKSKGLEYPFVFMCTLSKPLVRDDTRELIKLHKTMGCA 845 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--IICKHSNTSNE 673 + K + L + + + E RL YVG TRA ++L ++ Sbjct: 846 FVLKDRRLNVKRADLYYDHLSDMIVREHKSERMRLFYVGCTRAKEKLMFVLSNEKTGHVT 905 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKI----------------KLTNSINKDEWIAYEWSTH 717 + D V S D I KL +EW+ T Sbjct: 906 RSRIMEKLRDAVKASAKYDRIPADIVSAQENVLTWTVMCLSKLKERSALEEWLGMPLDTV 965 Query: 718 HPENTPL------------------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 E+ E + + + +L + + P P Sbjct: 966 PVSENAEGISISYHVCSEDTDTEVSEQNEKTVRAAADPALVARLRNIYAASADRPETRLP 1025 Query: 760 STIDTKGK--------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799 + + L L RG HK +++ Sbjct: 1026 AKLTVTEIVAAEKAKDQGDKNTEFFPNLPRLNDELDKLSAAERGTYTHKFMELADYSKAR 1085 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCP 858 + + + + + + + + MS D E + Sbjct: 1086 ESVDAELDRLVSRGCMSEREAKGVYTDKLKIFVNSSLFDRMMSSDDLRREQKFLASVKDL 1145 Query: 859 K----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 I G D I + +YKT + + + QL +Y+ Sbjct: 1146 GLTEELSEYTTNKGYIQGIADCIFKEPDGWVLVDYKTDNFKSTDEMK---RYKTQLMLYK 1202 Query: 909 KILKDSYPNKSLVCLLIY 926 + + + IY Sbjct: 1203 AAFELLL-GERVKSSYIY 1219 >gi|257420982|ref|ZP_05597972.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98] gi|257162806|gb|EEU92766.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98] Length = 752 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 91 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150 Query: 111 RDRFNTY-KMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 151 KNELQTLEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 559 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594 >gi|120611309|ref|YP_970987.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1] gi|120589773|gb|ABM33213.1| DNA helicase/exodeoxyribonuclease V, subunit A [Acidovorax citrulli AAC00-1] Length = 1168 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 143/959 (14%), Positives = 308/959 (32%), Gaps = 94/959 (9%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSM-ETGNPTILKKAQTL-QQASQTQCIEERFSLLSS 71 + L + ++ T K A + T ++ER L Sbjct: 243 AGLEHPAQALAAEDCRARWLAWAAALGSESAKTPQKAADAIVTAFCDTAGLQERLEALRG 302 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 K + + ++ ++ R + + + L + Sbjct: 303 ALFVAKEDRLTRHLEK------FAAAQEAERELQALCLARRQHEAWLHQQR---MARLTR 353 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A + K+ +D D+ +L +S W++ ++D + H+LIDE QDT+ + Sbjct: 354 ALVAAFGALKRDRGWVDMNDVERTALVMLSDPVLSGWVQERLDARVRHLLIDEFQDTNPL 413 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 QW+ + + + G P ++F VGD KQSIY F AEP+ + Sbjct: 414 QWQALHAWLAGYV-GTGGGQHPPSVFIVGDPKQSIYRFRRAEPQVFRAAQ-----AFVRQ 467 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 G ++ + R+ +++ V+ V + + H + ++L Sbjct: 468 GLGGDLLACDHTRRNAPEVIAAVNAVMGAAQAQGDYAGFRD----HTTESRDAGVLLRLP 523 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + + + ++ + Sbjct: 524 PIEDTADEDENGDGAPDARPDPLAWRDSLVQPRHEAEETLRMRECQQAARWVADRIAAGV 583 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 A+ I+VL RKR + R L + V ++ L + ++D++AL ++S Sbjct: 584 PARQIMVLARKRDRLSALQDALRDL----HLPCVQPEKVELCEAPEVQDVVALLDVLVSP 639 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------ 479 DLS L+SPLF + + ++ R E E + Sbjct: 640 GHDLSLARALRSPLFGVDDALLVRVAVARREAERGAARGPQEGGAPGWMELLADRALLDA 699 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNF 535 + + + H + PHD I + ++ + V+ L L+ Sbjct: 700 EMPGLSHDLRLYRHWVEQWPPHDALDAIYRHRDVLARYAAASPAPLRAGVLANLRALLSA 759 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L+ + Y + + L++ A + VR++T+H AKGLE+ V L+DT Sbjct: 760 ALQQDGGRYLTPYAFVRALKRPGQRAPGRVDA--DAVRLLTIHGAKGLEADAVLLLDTDG 817 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + + P P +++ S +D + + Q E LYV M Sbjct: 818 RAQKAETMGVLVDWPGELPAPRRFVFLASEASPPPSAADALAAEQAERQREEINTLYVAM 877 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA L + + + S + D + Sbjct: 878 TRARHCLALSCVRASQSAPGSWWNRVAPLAADVPQDLSGPMGGAEDGLG----------- 926 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 QL + + P+ E Sbjct: 927 -----------AAVDAQLPELPGWQDAVPLPMGLPPVAEAGAGAQAEAAVAGLPRERRAP 975 Query: 776 DNQTFNRGLIIHKLLQV------IFTLPEHKRKNFITSYCTKNAKL--WPAKEYKNLLLS 827 +G +H+LL+ + + + + A+ PA+ ++ + Sbjct: 976 STPVSRQGEAMHQLLEQAGLAGTLPGGAAGGSAGWPRARLQQLARDFELPAELAEHAAVM 1035 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG---RIDQISI--SQQ--NIFI 880 R+L+ +++ S ++ + I+ G RID++ + ++ Sbjct: 1036 AARILQ--------GEGAWAWSSAEIELAMDEAPIVHRGQTLRIDRLVRRSTDGGAEWWV 1087 Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 +YK+ + ++ E + Q+ Y + ++ +P + + + + ++ + + Sbjct: 1088 LDYKSAANPERQAELV-----EQMRRYRQAVQGQFPGEPVRAAFL-TGDGRMVEVDSSA 1140 >gi|307250580|ref|ZP_07532522.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857396|gb|EFM89510.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 699 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 112/551 (20%), Positives = 192/551 (34%), Gaps = 121/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R+ T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 609 AKKKLTISYAE 619 >gi|260220810|emb|CBA28747.1| DNA helicase II [Curvibacter putative symbiont of Hydra magnipapillata] Length = 872 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 101/586 (17%), Positives = 189/586 (32%), Gaps = 143/586 (24%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ ++ V+DF +L++ + +LL+ A IR + HILIDE QDT+ + Sbjct: 235 EIYQLYEDQCQREGVVDFGELMLRSFELLRDN---APIREHYQRRFRHILIDEFQDTNKL 291 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I+ + G + ++ AVGD+ QSIY+F GA + R R Sbjct: 292 QYAWIKMIAGVGQGGSDA--GAGSVLAVGDDDQSIYAFRGARVGNMTDFVREFAVR---- 345 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS ++IL + + S G + Sbjct: 346 ----QQIKLEQNYRSYSNILDSANALISHNSRRLGKNL---------------------- 379 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + D + + D A+ + + +I D + Sbjct: 380 -----RTDQGAGEPVRVYEAPSDFAE--------AQWMVDEMKQLIRDD----------V 416 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I VL R + +I + I + IK +A R + + Sbjct: 417 PRSEIAVLYRSNAQSRVIETGL----FNAGIPYRVYGGLRFFERAEIKHALAYLRLLENP 472 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF+ ++ P I ++ R ++++ + + + + Sbjct: 473 NDDTSFLRVVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDV 532 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN---------- 539 + + D L+L + + + R G + ++ LDE +N Sbjct: 533 MREQTADLNLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFVMQEGFGREA 592 Query: 540 ----------------------------------EQNSYSSLQELISELEQYPPTIKRAH 565 ++ +L L + L Sbjct: 593 PGMAPLVSSPEALLSQSPASQGLSGEALETAPDEFGDTGETLSPLQAFLTHAALEAGDNM 652 Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 +A + +++MTVH++KGLE VF+ +F H++ Sbjct: 653 AAAGQDAIQLMTVHSSKGLEFDCVFITGMEEGLFPHENS--------------------- 691 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL YV +TRA +L + Sbjct: 692 -------------MSDHDGLEEERRLAYVAITRARKRLYLSHSQTR 724 >gi|51473636|ref|YP_067393.1| DNA helicase II [Rickettsia typhi str. Wilmington] gi|81390099|sp|Q68WT1|UVRD_RICTY RecName: Full=DNA helicase II gi|51459948|gb|AAU03911.1| DNA helicase II [Rickettsia typhi str. Wilmington] Length = 658 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 112/567 (19%), Positives = 185/567 (32%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + L +AK + Y++ + VLDF DL++ N+L K I ++ Sbjct: 164 LSASDTNLPLQRVAKLIYEEYQKNLLISNVLDFGDLLLYNNELFIKNPE---ILKYYQEK 220 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT++ Q+ R L + R + VGD+ QSIY + GAE Sbjct: 221 YRYILIDEYQDTNIAQYLWARMLASLY----------RNICCVGDDDQSIYGWRGAEVGN 270 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N + Sbjct: 271 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHSKT-------- 314 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW DS + + + D AR IA I + Sbjct: 315 -------------LW------TDSASGEKIKIISCLSDKEE--------ARYIACEIDKL 347 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + + A +I +LVR T + + + + Sbjct: 348 VREER---------YHAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 394 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 395 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRSYALERNISNFVAIKEILE 454 Query: 476 ------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 + ++ I +P + IL E I Sbjct: 455 TGIFKAKSYESLKDLLTKIDNWYEKFITDTPINVVKTILDDSGYLSMLQEEKTEEAFGRI 514 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 515 ENINEMLRAIAEF--------NDIHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 566 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF + + Sbjct: 567 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 594 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 EE R+ YVG+TRA L I + Sbjct: 595 EEERRIAYVGITRAKKDLYITHAESRK 621 >gi|90415966|ref|ZP_01223899.1| UvrD/REP helicase family protein [marine gamma proteobacterium HTCC2207] gi|90332340|gb|EAS47537.1| UvrD/REP helicase family protein [marine gamma proteobacterium HTCC2207] Length = 1147 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 159/987 (16%), Positives = 308/987 (31%), Gaps = 121/987 (12%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70 ++ + + L P+ ++ I+ V N + + + ++ L+ Sbjct: 223 DNLLELDEALQPVAGEFIALIDFAVQHIAPKDNLALSQLGSFSELPEIGLEGVAQWKLIL 282 Query: 71 SFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIK-------------IRDRFNT 116 +T+ P+K I + ++K ++ D + + D Sbjct: 283 GLLVTKSNEPRKTINVKQGFPSDQKEIKARIIVLLDWCRERPELNEIIANVMHLPDAEID 342 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKI 173 K A L L A + ++ D+ + + + L+ V + I ++ Sbjct: 343 QSQQKMLDALGFLLPLLAAQLDVIFQQQGQCDYPAITLAALNALEPEAGDGVVSDITLRL 402 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 D ++ HIL+DE QDTS Q +++ L + RTLF VGD QS+Y F A Sbjct: 403 DYQLRHILVDEFQDTSAAQIKLLEQLIGGW-----QPDDGRTLFLVGDAMQSLYGFRNAN 457 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 L +R + + L +FRS I+ V+ F+ Sbjct: 458 VGLFLNAQRH-----PVGPVQCRPLTLSSNFRSQLGIIEWVNSAFTDA------------ 500 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 + G + V + + F ++ A IA Sbjct: 501 ---FPAHADISRGAIPYSPSVAVKAADNAQ------SVSFQGFSGDNHKLDEAAYIAKLC 551 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 S++ S I +LVR R I R K D L Sbjct: 552 SDLRDHKPDES-----------IAILVRGRGHLRSIIPALREAKLF----WQAIDITPLA 596 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----- 468 + + DL++L R +LS D ++++ +L++P S D+ + + + Sbjct: 597 SRMPVIDLLSLTRALLSPADKIAWLAVLRAPFCGLSLGDLLAVANSLGDNKENPHKPNNA 656 Query: 469 ----------------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 ++ + G Q ++ + + + Sbjct: 657 VLAQLIELLGVSASQLHLSHLSQDGQQCLQRIVPLLESAWANRGRTNLRASVEQLWIDLG 716 Query: 513 GRQQFISRFG-NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----YPPTIKRAHSA 567 G ++ LD N+ + ++S + + +L + Sbjct: 717 GPATLKDSADLSDARSYLDLLENWQTGATVSDWNSFKLAVDKLYAAPSPDDGGSDNTDGS 776 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---Q 624 + ++IMT+H AKGLE V L S K I P Sbjct: 777 QKSVIQIMTIHKAKGLEFDHVILPGLSRGSGSDKKQLMRWQQHIDEHSDSSLIMAPLGAH 836 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 + +++ S L + T+ E R+LYV TRA +L +C + + Sbjct: 837 DEEDDSVYSYLKREDSLKTRLESTRVLYVAATRAVRRLYLCGAVKQLKNGQWQPTGKTTL 896 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + + + E L +A + S P + R + Q L Sbjct: 897 LTPIWKSIETGLDQGLYAVQQSATELADKDSKEVPSLRHIRRLDGQFQSPQRPDTSANLG 956 Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--------QVIFTL 796 +P E S ID+ ++ + G ++H+ L + Sbjct: 957 TP------ETSAETGSDIDSSL---------SSRARSMGTVLHRTLKQLANEGVEQWPES 1001 Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856 + + + L E K+LL ++ +L + + ++ + Sbjct: 1002 RISQLPATWGAQLKELGMLARPDELKSLLDAVNSMLADQRGRWILQHHEQAQCEQALGYR 1061 Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE-----HIPYTHIAQLSIYEKIL 911 + + + ID+ + +I +YK E E + AQLS Y K+ Sbjct: 1062 YSDRGHVGTSVIDRTFVENGTRWIIDYKLSQPAEGESETQFIVRQSSAYSAQLSHYAKLY 1121 Query: 912 KDSYPNKSLVCLLIYVSEPKVFIIPQN 938 + N + C L + P + Sbjct: 1122 RSMQAN-PVHCALYFPQIPMFIELEAE 1147 >gi|54294730|ref|YP_127145.1| DNA-dependent helicase II [Legionella pneumophila str. Lens] gi|53754562|emb|CAH16046.1| DNA helicase II [Legionella pneumophila str. Lens] Length = 721 Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats. Identities = 111/604 (18%), Positives = 198/604 (32%), Gaps = 121/604 (20%) Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 +R + + T ++ + YE+ + + V+DF +L++ T++LL+ + Sbjct: 152 EGLRPQHINALHYGPTKTLVS----IYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE-- 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + IL+DE QDT+ IQ+ IR L D + AVGD+ QSIY Sbjct: 206 -ILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTA----------VLAVGDDDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + + + + II L ++RSTA IL + + G Sbjct: 255 GWRGAKVENIQQFVHDF--------KDTQIIRLEQNYRSTAMILNAANALIHNNSTRMGK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 +LW + ++ S F+ L + AR Sbjct: 307 ---------------------ELW-------TAGSEGEKILVYSAFNELDE-------AR 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I + A +I VL R + ++ I+ Sbjct: 332 FVTERIGMELNQG----------ASADEIAVLYRSNAQSRVLEEAL----LRAGIAYRIY 377 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 D IKD +A R +++ DD +F ++ P E + ++ R E ++ Sbjct: 378 GGVRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSL 437 Query: 467 YEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QF 517 + + G I I +L + + + ++ + Sbjct: 438 WGASKGILQSTGLGQRGSLALAKFIDLIEKLQIVVANKELDEQISDVIQHSGLYAHFSKI 497 Query: 518 ISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRI 574 +D L E +N + E + L + S L + V + Sbjct: 498 KGDKSESRVDNLQELINAAKQFRYEYDEEEELPLVNSFLAHASLESGELQADEHERSVHL 557 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE P+VFLV +F + Sbjct: 558 MTLHAAKGLEFPIVFLVGMEEGIFPGRQS------------------------------- 586 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + EE RL YVGMTRA +L++ + + + Sbjct: 587 ---IEEPGRLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLD 643 Query: 695 VKKI 698 ++ Sbjct: 644 EVRV 647 >gi|189218845|ref|YP_001939486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Methylacidiphilum infernorum V4] gi|189185703|gb|ACD82888.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Methylacidiphilum infernorum V4] Length = 1055 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 160/943 (16%), Positives = 320/943 (33%), Gaps = 109/943 (11%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ--------ASQTQCIEERFSLLS 70 D W P K L+ E G T+L++ ++L + + + F L Sbjct: 196 DFWGEPG----SFQKEEELTKEAGFLTLLERIESLLKTAGIPTKTWEEQKLKISSFPRLY 251 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 L + +K DL E+L S + F K + T A L Sbjct: 252 RNLLEAYDPQTGRCPQIRLERKRYDLNEELASSLGMLAQKTIDFFIEKSHRRTKAVAQLL 311 Query: 131 KYLNAHYEEAKKKNCVLDFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y + ++ + FED+ I+ DL + YK+D++ +H+LIDE QD Sbjct: 312 SFYDLLYRKTVERQAICSFEDIPRIILQAVDL----NCPQPFLYKLDRKWDHLLIDEFQD 367 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 TSL+QW+VI+ ++ ++ R+ F VGD KQSIY + GA + + + Sbjct: 368 TSLLQWKVIKLFVDEIIQHED---GSRSFFCVGDPKQSIYGWRGAYSGLIDSLEVEYR-- 422 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +L S RS+ +L +V+++ E L +S + R Sbjct: 423 -------MEKRQLSGSRRSSKAVLELVNRLLGNFEKIGKLLPESLERWKKRWVYQEA--R 473 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + E Q + S + E + + I ++ + Sbjct: 474 DEELEGYGCFLCVQLPQGEAKGDSPEEGNNGEEKETGGSLLRYEAIKKLLVDEIKPHQ-- 531 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGR 426 +A VLV+ K+ + ++L + V + D+L K AL + Sbjct: 532 ----RALSCAVLVQTNKEA---EAIFQYLSLCSALRVSLEGKIYPGKDNLMAKLFFALVQ 584 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486 + D L+ + SP+ + + + + Sbjct: 585 SLAHPADSLALGWLQASPIGSI-----------------FKDEQWRKEFWRVFSLAGFEA 627 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546 + + SP + F + ++ L + Sbjct: 628 LAFRFLAALKENSPGEDFQ--------------------NERMEMILQICRSFDNTGSRD 667 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS-HKHIKK 605 + ++ + Y S + + V++ TVH+AKGLE VV + + + +++ Sbjct: 668 CDQFLNYYKNYSL----PLSEDPSSVQVRTVHSAKGLEFDVVLVTELAGSRNTAMNQLRE 723 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSD--LIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + + + ++P+ + + L K L + E LLYV MTRA L Sbjct: 724 LPVAYKSSSRDWKLFFLPRREVAEKVPRLSCLYKELLAEEELEKLSLLYVAMTRARQGLY 783 Query: 664 ICKHSNTSNEKKSNQR---TWYDMVYDSFHNDERVKKIKLTN-SINKDEWIAYEWSTHHP 719 + K S Q+ W D++++ E + + + T P Sbjct: 784 LLGEVREKKSKPSTQKKLVYWQDLLFEVLGRGEDTSRWFFPDFPLLTVFETGKRRWTPRP 843 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 N RE+ + + + ++ ++PS++ + + Sbjct: 844 RNELFRREK-------YKAMESQDLLFPPRALSRTSFVSPSSVGVQAAELDLFSRVKEKG 896 Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839 + GL++HK+L + E ++ E KN + L++ + Sbjct: 897 LDYGLLVHKILAQVERFSEAIKEKLEKRALE----YAKGDEEKNPFKEVLECLQSAAIKP 952 Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-----IFIFEYKTHHHVPQEIE 894 S + ++V + + G D++ I + ++++KT E Sbjct: 953 IFSPEEGTKVWIERSFCVELDGRWLRGTFDRVHIKEDPTGELMCTLYDFKTDFVTEDRKE 1012 Query: 895 HIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFII 935 + + QL Y+K L P + ++ +S ++ + Sbjct: 1013 ELAQKYRLQLEYYQKALCRLLGIPAWRVKVFIVSLSLKELIAL 1055 >gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999] Length = 722 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 110/722 (15%), Positives = 222/722 (30%), Gaps = 132/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + +S + + + + L+ S Sbjct: 30 GAGSGKTRVLVHRIAWLMEVENLSPFSILAVTFTNKAAREMRGRIEQLKGQSLHHMWIGT 89 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI------------ 110 F L+ L + +N + + + +K +K + Sbjct: 90 FHGLAHRLLRAHYAEANLPENFTILDSDDQHRLIKRIIKSMNLDEKDWPAKQSQWYINGN 149 Query: 111 -RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + A+ + + Y++ ++ ++DF +L++ +L + D I Sbjct: 150 KDEGLRPKDIDTYGDANQQKMRDIYQAYQQTCDRSGLIDFAELLLRAYELWRDND---RI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R + +L+DE QDT+ IQ+ +R L+ + VGD+ QSIY + Sbjct: 207 RQHYQERFRAVLVDEFQDTNNIQYAWLRLLSA----------PSNNMMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + + I L ++RST IL + V G Sbjct: 257 RGANVENISHFLKDFP--------SADTIRLEQNYRSTGHILKAANAVIDNNAGRLGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + ++ + F+ L + AR I Sbjct: 307 -------------------ELW-------TEDADGEKIKLYAGFNELDE-------ARFI 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + D +L R + ++ I Sbjct: 334 VARIKEWMDQGYAL----------SDCAILYRNNAQSRVLEEAL----LQEAIPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD +A R I DD +F ++ +P + + +I R +++++ Sbjct: 380 QRFFERQEIKDALAYLRMINHPLDDAAFERVVNTPTRGMGDKTLSQIREVARETEQSMWQ 439 Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 ++ + Q + I + + + ++ A + + G Sbjct: 440 TSVMMLQEKRLKGRAGNALQGFVDLIMNMSNDIKPLPLEQQTDHVIKASGLVAMYQAEKG 499 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + + L+E + + E + L + L + + + V++MT+ Sbjct: 500 EKAKARVENLEELVTACKQFEVPEEADDMTPLSAFLAHASLEAGEGQAEKHQDAVQMMTI 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 HTAKGLE +VFL +F Sbjct: 560 HTAKGLEFSLVFLAGVEEGMFPSAMTNDEPG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVGMTRA +L I + T + + + Sbjct: 591 -----RLEEERRLCYVGMTRAMQKLYITHAETRRVYGQDKFHTASRFIREIPKECIEEIR 645 Query: 698 IK 699 ++ Sbjct: 646 LR 647 >gi|284040435|ref|YP_003390365.1| UvrD/REP helicase [Spirosoma linguale DSM 74] gi|283819728|gb|ADB41566.1| UvrD/REP helicase [Spirosoma linguale DSM 74] Length = 764 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 105/629 (16%), Positives = 200/629 (31%), Gaps = 113/629 (17%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y +DF+DL+ NTN L + I +K + H+++DE QDT++ Q Sbjct: 177 IYKQYALRCFAANAMDFDDLLFNTNVLFRDH---LDILHKYQHKFQHVMVDEFQDTNVSQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + + R L + + VGD+ QSIY+F GA + +L +R K Sbjct: 234 YLITRKLAA----------VHQNICIVGDDAQSIYAFRGANIENILNFQRDYGK------ 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I++L ++RST I+ + + S +N S + + L + Sbjct: 278 ENVKIVKLEQNYRSTKTIVEAANSIISRNKNQLEKSVFTAN---------EDGPLIDLIK 328 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + R +A +I F + Sbjct: 329 ASSDNEEG--------------------------RLVASSI---------FEAKMNESLT 353 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + R I IKDL+ RF ++Q+ Sbjct: 354 NNDFAILYRTNAQSRAFEEALR----KVSIKYRIIGGLSFYQRKEIKDLIGYLRFTVNQQ 409 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK----FQHVIKY 487 D+ +F ++ P + + KI + E+++E + + + Sbjct: 410 DEEAFKRIINLPKRGIGDTTVAKISVIAAEKQESIWEIVANIGQHVAGRSAIPIEGFANL 469 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQ 541 I + + + I ++ E + + E LN Sbjct: 470 IKSYKLLLDQKDAFEVASHIAKTSGLLKELYDDKTVEGLARYENVQELLNAIKEFVDNPD 529 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 N SL + + ++ ++++V +MT+H AKGLE V +V +F + Sbjct: 530 NEEKSLSAFLQSVSLLTTADEKEDDGDNDKVTLMTIHAAKGLEFKNVHIVGLEEDLFPSQ 589 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + +S EE RL YV +TRA + Sbjct: 590 MML----------------------------------ESRSDLEEERRLFYVAITRAEKR 615 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST-HHPE 720 L + + + + + ++ K++ S + + S Sbjct: 616 LTVSYAETRYHYGRLKMCEPSRFLMEIDQKYMKMSKLRSAPSRTDFDRPERDRSESTSTG 675 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKN 749 + R K + P +P + Sbjct: 676 SMSFVRSLAQKTARSQAPQPTVSHTPSAD 704 >gi|21673182|ref|NP_661247.1| DNA helicase II [Chlorobium tepidum TLS] gi|21646262|gb|AAM71589.1| DNA helicase II [Chlorobium tepidum TLS] Length = 759 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 106/635 (16%), Positives = 202/635 (31%), Gaps = 118/635 (18%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y ++N LDF+DL+I +L ++ + ++ ++LIDE QDT+ +Q Sbjct: 184 VYERYVHKLRENNALDFDDLLIKPIELFTEQP---RVLEQLQDYFKYLLIDEYQDTNRVQ 240 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + V + + E R +F VGD+ QSIYS+ GA+ +L Sbjct: 241 YLVAKMIAE----------KHRNIFVVGDDAQSIYSWRGADISNILNFNDDY-------- 282 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + +L ++RST IL + V S + + + Sbjct: 283 GDAQVFKLVDNYRSTKTILDAANSVISRNTHQIKKELVANAGM----------------- 325 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ + A ++A I ++ + Q Sbjct: 326 -----------GEPITLIEAFNEKRE-------AEKVAEHIKSI---------RLSKGAQ 358 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + V R + +I + R +I IKD +A R +L+ Sbjct: 359 YRSFAVFYRTNAQSRVIEDMMR----QNRIPYKIFGSVSFYKRKEIKDAVAYMRLVLNDR 414 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKFQHVIK 486 D S + ++ P + I K+ ++YE +++ F ++ Sbjct: 415 DSESLLRVINFPPRKIGDVSINKLKEFAEERNISLYEAVKRAGEGGFQARLVNALTQFTD 474 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS 543 I + A+ + +D +++ E + L E L+ T ++ Sbjct: 475 LIEAMRKQAEEGTAYDVLSMLYETTGLLSLLKEENTPEALARHENLQELLSMTRDFADHN 534 Query: 544 YSS--LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +S L + +S + + N V +MTVH AKGLE PVVF+ ++F Sbjct: 535 PNSATLGDFLSTISLASD--YDETQESDNYVSLMTVHAAKGLEFPVVFVTGMEEKLFPLN 592 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA ++ Sbjct: 593 S------------------------------------YEPGELEEERRLFYVAITRAREK 616 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L + + + + + N + + + K + Sbjct: 617 LFLSWAQSRYMYGQPQMCMRSTFINEINPNIIVTEGGRKLSESPKKVAATAMAGRPVFGS 676 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 + + P P +E Sbjct: 677 SLRPQPGGSPAAKVPTVKPAGSARPTGAAKSEYRP 711 >gi|261493261|ref|ZP_05989788.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311111|gb|EEY12287.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 734 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 111/580 (19%), Positives = 204/580 (35%), Gaps = 117/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L K + I + Q ILIDE QDT+ I Sbjct: 178 EIYQIYQDACDRAGLLDFAELLIRAYELFKTKPT---ILQRYQQRFQQILIDEFQDTNNI 234 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L D + VGD+ QSIY + GA+ + + R Sbjct: 235 QYDLIRLLAGDV----------GKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN----- 279 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL+ +++ + +N G + LW Sbjct: 280 ---AQTIRLEQNYRSTGNILSCANELIANNDNRLGKN---------------------LW 315 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + F+ L + AR +A I + Sbjct: 316 -------TDSGDGEPVDIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 353 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 354 --AECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 407 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P + + + R T+++ IQ + + S Sbjct: 408 QDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQEEQLSGRATSSLLRF 467 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I+ L + S + ++ + + G + I+ L+E + T + + Sbjct: 468 VELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFVK 527 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L +L + L + S + + V +MT+H+AKGLE P VF+V +F Sbjct: 528 PDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 587 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + +E RL YVG+TRA Sbjct: 588 SGMSFD-----------------------------------EGRLQEERRLAYVGITRAK 612 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L I + K + + + R +++ Sbjct: 613 KKLTISYAESRRLYGKEERHVPSRFIAELPEEHIREVRLR 652 >gi|260775103|ref|ZP_05884002.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC BAA-450] gi|260609020|gb|EEX35180.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC BAA-450] Length = 723 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 98/549 (17%), Positives = 183/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + R Sbjct: 229 QYAWLRMMAG----------PESHVMIVGDDDQSIYGWRGAKIENIEKFTREFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 310 -------TDGVEGEPISVYSAYNELDE-------ARFAVNKIKEWQEKGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R + ++ Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMANR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P + + I R T+++ + Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWQASVALLDEQVLAGRAAGALSRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ + L S H+ ++ + G + I+ L+E + T + E+ Sbjct: 462 VELVSALEDDTCEMSLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 PEEAEEMTLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 ++L I Sbjct: 608 EKLYITYAE 616 >gi|281420327|ref|ZP_06251326.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205] gi|281405629|gb|EFB36309.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205] Length = 836 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 124/729 (17%), Positives = 224/729 (30%), Gaps = 140/729 (19%) Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRFNTYKM 119 E L + + K ++ K K L + ++ +M Sbjct: 112 DESDSRSLIKAIVKEMGLDDKKYKPAAVHAKISMAKNNLMSAAAYESDATIFEQNKRAQM 171 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + + Y + K+ +DF+DL++ T L ++ + IR+K ++ Sbjct: 172 PE--------VGKIFVAYVQRCKQANAMDFDDLLMLTYQLFREHED---IRHKYAARFDY 220 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +L+DE QDT+ +Q ++ L ++ + + AVGD+ QSIYSF GA +L Sbjct: 221 VLVDEYQDTNHVQMSIVMQLCQE----------KQRVCAVGDDSQSIYSFRGANIDNILN 270 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 +R Q + +L ++RST I+ + + N I Sbjct: 271 FQRQFQ--------GTRLFKLEQNYRSTQTIVEAANSLIKHNRNQ----------IPKDV 312 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 G ++ S + A +A + + Sbjct: 313 FSENAKGEKIQYKPAYSDKE-------------------------EAAIVAKDVKRIRRE 347 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 D Q D +L R + R I IK Sbjct: 348 D---------GCQYSDFAILYRTNSQSRSFEEEFR----KQGIPYRIYGGLSFYQRKEIK 394 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC-- 476 D++A R + + D+ + ++ P + KI + +E I Sbjct: 395 DIIAYFRLVANPNDEEAIKRIINYPARGIGATTVLKIADCAHQNQVSFWEVIGAPERYGL 454 Query: 477 -----GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDV 528 ++K + I I AQ ++ I+ Q +S + + Sbjct: 455 AVNKGTMNKLETFRLLISSFIERAQTTDVYELGDAIIKESGISQDIMSGKDADDLARQEN 514 Query: 529 LDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRAHSANHN--EVRIMTVHTAK 581 L+EFL+ E+ + L L L+ + + V +MTVH AK Sbjct: 515 LEEFLSGMSAFVEERREEGKFDELF-LQDYLQDVALLTDADSDGDKDEPRVSLMTVHAAK 573 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE P VF+V +F + Sbjct: 574 GLEFPTVFVVGLEENIFPSP----------------------------------LSATSL 599 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 EE RLLYV +TRA I+ N K + KL Sbjct: 600 RDLEEERRLLYVAITRAEKHCILTNAKNRWRYGKMEFDNPSRFI--------DEIDGKLI 651 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761 +S+++ + + PE +R + ++ + + + PS Sbjct: 652 DSLDEAGGSLFGSMSDQPEWARAQRPRRPWEDAEQPRYSSRYQNSKPVASQFVADPKPSL 711 Query: 762 IDTKGKTNL 770 D + +T+ Sbjct: 712 FDDEPETSR 720 >gi|284033229|ref|YP_003383160.1| UvrD/REP helicase [Kribbella flavida DSM 17836] gi|283812522|gb|ADB34361.1| UvrD/REP helicase [Kribbella flavida DSM 17836] Length = 1079 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 142/986 (14%), Positives = 273/986 (27%), Gaps = 195/986 (19%) Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L + L+ +++ + ++++ + + E + K T Sbjct: 182 TLVNSLLSLDGELADHLLRAD------EIRDHDEAVRQEVAAAPKQTVEVKKLAETALKR 235 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L Y+ K + V+DF D + L ++ I +L+DE QD Sbjct: 236 GEILQLVEEYQAYKAERGVVDFADQMALGARLAEQCPEVPAI---ERSRYKVVLLDEYQD 292 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 TS+ Q R LT F H + AVGD Q+IY + GA + + Sbjct: 293 TSVSQ---RRMLTALFAGPDPEHGRGHPVTAVGDPCQAIYGWRGASVANLDEFPEHFRN- 348 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 G L ++ R + IL + E+A L E I + G Sbjct: 349 --ADGTPARRYVLSVNRRCGSRILAAAN------EHATELYEQHPGVIPLEAPDGAPEGA 400 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + + IA +I K Sbjct: 401 ITVGLFETRSQEI--------------------------EWIADSIVA---------AHK 425 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + KDI +L+R D + K + V L + D++A + Sbjct: 426 TPNRRWKDIGILMRTNVDLSAVHEALIARK----VPVEVVGLGGLLALPEVVDVVATLQA 481 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------------------------- 461 + + + + +L P + D+ + + Sbjct: 482 VNDLTANAAMLRILTGPRYRIGHRDLALLANRSRALADGGDRPAADDLVAALDAAVAGMD 541 Query: 462 --ETETVYEYIQK-------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 E ++ E + ++ + +FQ + + EL A D ++ Sbjct: 542 STEVISLAEAVDDPGPAGWGYSPEALERFQELSTELRELRAHAGE-PLLDLVRRVISTIG 600 Query: 513 GRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPT---IKRAH 565 + + + D L FL+ SL L++ L + A Sbjct: 601 LDVELTATPDHVDSGRRDHLAAFLDAVGNFVSTESDGSLDGLLAYLAAEEEYAAGLDLAV 660 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK-------MHIMPSLNDDPGI 618 + + V+++T H +KGLE PVVF+ ++VF + + P D + Sbjct: 661 PSEADSVKLLTTHRSKGLEWPVVFVPTLVNKVFPSDRGRDKWTTNAKVLPWPLRGDADTL 720 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 P + N + K+ E RL YV TRA + LI H +K+ Sbjct: 721 PDFH---DLSNAGLKAFSDECKQVNSLEERRLGYVAFTRAKEVLIATGHWWGPTQKRPRG 777 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------------ 726 + Y + D + ++ +A + P E Sbjct: 778 PSAYLEMLKKHAGDRVIAWAPQPELSEENPELAEQTQAAWPAPYDAEAYRRRLEGAALVQ 837 Query: 727 -----------------------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI- 762 +L ++ S D+ P L+ + + Sbjct: 838 QARAEGPSAEAEESLLLDEQATVARWDSELERLLSEARESRSRKAYDVELPRTLSATQVM 897 Query: 763 -------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 + N+ G H ++ F L Sbjct: 898 RLAKDPDGLATELARPMPRKPNRAARFGTRFHAWVESYFG----------------QQFL 941 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSC------DSYSEVSVSGKINCPKKDIIISGRID 869 + ++++ +T M + + ++ GRID Sbjct: 942 LDPDDLPGAADE--GIVDDTDLTELMDAFRVGPYGEKAPYEIEAPFALSIGGRVVRGRID 999 Query: 870 QIS--ISQQ---NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVC 922 + + + ++KT + QL+IY + P + Sbjct: 1000 AVYQVVRPDGSRGYDVVDWKTSRSETADP--------LQLAIYRVAWAELLGIPLTQVGA 1051 Query: 923 LLIYVSEPKVFIIPQNKLNKAFAEIS 948 YV + + + Sbjct: 1052 AFYYVRTGDIVRPDNLPTKQELVTLL 1077 >gi|147669647|ref|YP_001214465.1| UvrD/REP helicase [Dehalococcoides sp. BAV1] gi|146270595|gb|ABQ17587.1| UvrD/REP helicase [Dehalococcoides sp. BAV1] Length = 738 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 100/551 (18%), Positives = 183/551 (33%), Gaps = 118/551 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + YE+ K+N LDF+DL++ L K+ + + H+++DE QD Sbjct: 167 EMVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQHPE---VLAGYQERYLHVMVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+L+Q+E+++ L+ + R + VGD QSIYS+ A+ + V + Sbjct: 224 TNLVQYELVKMLSAKY----------RNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST +IL V + + +S Sbjct: 270 ----NPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + Q + F+ + A+ + I + Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +I +L R + + Y + +KD++A R Sbjct: 342 YEKFSPGNIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480 + + +D +S ++ P + + R + ++Y+ + ++ K Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLAQFAREQDISLYQSLINLSDENAPKPPIPSR 457 Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535 + LI AQ + +L R+ S G E D + E Sbjct: 458 GLKPLTDFGALLKSLIIDAQTLPLLNLLDRLLEGISYREFLFASEDGEERWDNILELRTV 517 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + ++ + L + LE + V ++T+H AKGLE PVVF+V Sbjct: 518 AQQYQEILPP--EGLSAFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 V H + +E RL YVG Sbjct: 576 EGVLPHNRSFDDP----------------------------------AQMQEERRLCYVG 601 Query: 655 MTRASDQLIIC 665 +TRA +L + Sbjct: 602 VTRAKKRLYLV 612 >gi|32034174|ref|ZP_00134396.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208790|ref|YP_001054015.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae L20] gi|126097582|gb|ABN74410.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 732 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 112/551 (20%), Positives = 192/551 (34%), Gaps = 121/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R+ T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 609 AKKKLTISYAE 619 >gi|189463105|ref|ZP_03011890.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136] gi|189430084|gb|EDU99068.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136] Length = 784 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 112/772 (14%), Positives = 227/772 (29%), Gaps = 135/772 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV--SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 + E E I + + + + S + T A + Sbjct: 63 AAREMKERIARRVGAERARYLWMGTFHSIFSRILRT-----EAAAIGFSANFTIYDAADS 117 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 SL+ + ++ + + + + D + R+ + + A Sbjct: 118 KSLIKAII--KEMQLDDKVYKPGVVQSRISNAKNHLMLPDAYAASRELYENDQA-----A 170 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + + Y E +++ +DF+DL++ T L + K ++L+DE Sbjct: 171 KIPAVRDIYRRYWERCRQSDAMDFDDLLVYTYILFQTHPELCD---KYASRFRYVLVDEY 227 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q ++ LTE + R + VGD+ QSIYSF GA +L+ + Sbjct: 228 QDTNYAQHCIVLQLTEKY----------RHVCVVGDDAQSIYSFRGANIDNILKFTSLY- 276 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + + +L ++RST I+ + + S Sbjct: 277 -------KDARLFKLEQNYRSTQTIVKAANSLIEKNREQIRKEVFS-------------- 315 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 ++ + +Y D E +A I+ + Sbjct: 316 -------------ENDKGEPITVFNAYSDVEEGEI--------VANKIAQL--------- 345 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 K+ + VL R + + R + IKD++A Sbjct: 346 RTKKGYSYDEFAVLYRTNAQSRIFEEALR----KRGVPYRIYGGLSFYQRKEIKDVIAYF 401 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK-------FANCG 477 R ++ D+ +F ++ P + KI + ++++ + + Sbjct: 402 RLAVNPNDEEAFKRVINYPARGIGNTTLNKIIDAANVHRVSLWKVLNEPLTYGVSLTKGT 461 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534 +K Q I + ++ I+ E + ++E +N Sbjct: 462 HTKLQAFRDLIAGFVEAVSHTGAYELGKDIVRQSGIINDIYQDRSPENLSRQENIEELIN 521 Query: 535 FTLRNE---QNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVF 589 + ++ L L + + + V +MT+H+AKGLE VF Sbjct: 522 GMHDFCAGREEEGNTHILLTDYLSEVSLLTDQDSEGADDAPKVTLMTIHSAKGLEFKNVF 581 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 +V +F + EE R Sbjct: 582 VVGLEENLFPSPMAGDSY----------------------------------KQLEEERR 607 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 L YV +TRA + + K + D + + + + K E Sbjct: 608 LFYVAITRAEEHCFLSFAKTRFKYGKVEFSNPSRFLKDIDARYLNLPQEDIVSR--KVEE 665 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761 A + +TP + D +IP++ +K P+ Sbjct: 666 GAKRFRREMDSDTPRYISGNSPSMFDGGEIPEEPRRFVKPAAPRVLRRIPAA 717 >gi|269798726|ref|YP_003312626.1| recombination helicase AddA [Veillonella parvula DSM 2008] gi|269095355|gb|ACZ25346.1| recombination helicase AddA [Veillonella parvula DSM 2008] Length = 1288 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 113/664 (17%), Positives = 210/664 (31%), Gaps = 53/664 (7%) Query: 52 TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL----KEKLKKSQDEF 107 Q + + + + + + + + L K+ LK Q Sbjct: 272 AAQSWNDMGDACKHMDTFIKDQF-RMGSKEAQVYDPILVAEFKSLGVQNKDDLKAMQTAI 330 Query: 108 IKIRDRFNTYK---MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL---- 160 + + + + + L + Y + K++ ++DF DL LL Sbjct: 331 FTVPEATLQEQFKAQYPIIEGLVELTIAFHKAYRDMKQEQGIMDFSDLEHLCLALLVEPG 390 Query: 161 -KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 + + + ++ I++DE QDT+ +Q +I + S F V Sbjct: 391 TEDDPQPSEVAKELQDTFKEIMVDEYQDTNGVQETIINLI-----------SRVDNRFYV 439 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD KQ+IYSF A+ + + I+L +FRS A+IL + +F Sbjct: 440 GDVKQAIYSFRMADSSLFMEKYNTY----GGTDAVERRIDLAKNFRSDANILAATNFLFY 495 Query: 280 IPENAQGLSEDSTTTIRHRSSR-------IGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332 + T R G V+L VS+ + E Sbjct: 496 QIMTEDAAELNYTEAESLIPGRIVEDVPEDWVGGDVELQLLDVSKDTLGASESDE----- 550 Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLVRKRKDTPLIT 390 D + I I + +G R I+ +D +L R Sbjct: 551 -DEGDDPENNERELDFIIQKIKEIHAAKKQVQNPDGTFRQIEWRDFAILRRSLAGWGTRA 609 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 I V N+R + I+ L+AL I + E DL +L S L Sbjct: 610 V---EAMRQAGIPAVVNERDGYFEAQEIQLLLALLSIIDNPEQDLPMAAVLHSGLVGLDA 666 Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 +++ + E + I ++ +++ D I + Sbjct: 667 NELGALRLS-GEGSLWSLMPAYAEVAQDERLLAFIGHMERWRTLSRRHGVTDLLWDIYES 725 Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---- 565 + G + + E + + L + +E + + Sbjct: 726 QDYVNYVGAMPNGLVRRANVLALYDRAKGYEASGFRGLFRFLRFVESLRDSNQDMPLANV 785 Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 S N VR+MT+H +KGLE PVVFL + ++ I + + Sbjct: 786 VSEADNVVRLMTIHKSKGLEFPVVFLSGVQKRFNMMDLRSELLIDKNAGLGLKGYFPDIR 845 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 + + + + E R+LYV +TRA D+L + K T ++ Sbjct: 846 VSFPTMPWFYVKDVKEAALKAEEQRILYVALTRARDKLFMTGFIKGFKNSKGVLSTMGEL 905 Query: 685 VYDS 688 + ++ Sbjct: 906 IKNA 909 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 53/171 (30%), Gaps = 13/171 (7%) Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 L+S G ++H+ +Q + + + + +E L Sbjct: 1110 KPQALQSKEDVLTGAQWGTLMHEAMQWLPLVKYTQASLTKELDALVAKGTFTEEERNLLS 1169 Query: 826 L-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQ 875 S+ + + + + + E+ S +++ + G ID Sbjct: 1170 DTSLYKFFSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEES 1229 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + +YKT E + + Q+ +Y++ L+ + IY Sbjct: 1230 GEWVLVDYKTDRVTSG--EDLIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1277 >gi|291166490|gb|EFE28536.1| ATP-dependent DNA helicase PcrA [Filifactor alocis ATCC 35896] Length = 725 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 99/549 (18%), Positives = 177/549 (32%), Gaps = 113/549 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y++ +DF+D+I T +L++ + I + + HIL+DE QDT+ Sbjct: 167 QEIYDMYQKRLYSANAIDFDDIIFYTVKILEEYEE---ISFFYQGKFKHILVDEYQDTNY 223 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ I+ L+E + L VGD+ QSIY + GA+ + +L ++ Sbjct: 224 LQYRFIKILSE----------KHQNLCVVGDDDQSIYRWRGADVRNILEFEKD------- 266 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + II+L ++RST IL V V S + G + + Sbjct: 267 -HKDTKIIKLEQNYRSTQTILNVAYDVISKNIGRMNK----------KLWTENGTGELII 315 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 +++ S+ + +A I ++ Sbjct: 316 LKKLYSEKEEGA-------------------------WVANQIKELVDK---------FD 341 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +I VL R + I + D IKDL+A R I + Sbjct: 342 YSLDEIAVLYRANAQSRAIEDAF----VLKDMPYQVFGGIKFYDRKEIKDLLAYLRLISN 397 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCGISKFQHV 484 D SF ++ P I KI + + + F+ +++ Sbjct: 398 TSDISSFRRIINIPKRGIGIKTIEKIEFNALSDSKTVYEYLLSDELLDFSVKVRKNLKNL 457 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 I + +++ + IL R++ E + L EFL+ Q Sbjct: 458 ISMMETFRSMSELIPLDELIETILDHTGYRKELEEEKTEEANNRLENLREFLSVAKDFYQ 517 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L L ++ +V +MT+H+AKGLE VF+V +F Sbjct: 518 TKEKE-EGLSDFLFGLSLATEQDEDETEGKVSLMTLHSAKGLEFRAVFIVGMEEGLFPIS 576 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 YVG+TRA ++ Sbjct: 577 RAVYDEYELEEERRL----------------------------------CYVGITRAKEK 602 Query: 662 LIICKHSNT 670 L + Sbjct: 603 LYLTYTGER 611 >gi|86739360|ref|YP_479760.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3] gi|86566222|gb|ABD10031.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3] Length = 838 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 108/780 (13%), Positives = 217/780 (27%), Gaps = 144/780 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + NE E + + P VS + + + + + Sbjct: 121 AANEMRERVSALVGPRARAMWVSTFHSACVRILRSEAKRL-----GFGSTFSIYDAADAQ 175 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+ + L ++ ++E I + ++T Sbjct: 176 RLITLVTRDLDLDPK--------RHPARGLAAQISNLKNELIDWEAARD-----RATNHL 222 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + A Y++ + LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 223 ERTVAEVYAAYQQRLAQANALDFDDLIMMTVNLLQSFPD---VAEHYRRRFRHVLVDEYQ 279 Query: 187 DTSLIQWEVIRSL-------------------TEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 DT+ Q+ ++R L + P L VGD QSIY Sbjct: 280 DTNHAQYVLVRELVGQPAYFGGGSAPVEPAEPAAGPGTWASGAVPPAELCVVGDADQSIY 339 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA + ++ + ++I L ++RST IL+ + + + + Sbjct: 340 AFRGANIRNIVEFEEDFPN--------AAVILLEQNYRSTQTILSAANAMIARNNQRKAK 391 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 S + ++ + + + A Sbjct: 392 RLWS----------------------------DAGDGEKIVGFAADNEHDE-------AA 416 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A + + ++ + D+ V R + + + + Sbjct: 417 FVAEEVDRLSDA---------KLARPADVAVFYRTNAQSRVFEEIF----VRVGLPYRVV 463 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 + I+DL+A R + + D ++ +L P E + + Sbjct: 464 GGVRFYERKEIRDLLAYLRVLANPSDTVNLRRILNVPRRGIGERAEAALAGFADVERIGF 523 Query: 468 EYIQK-------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + A + + EL +A +L + ++ Sbjct: 524 AQALERVDEVPGIAARSAKAVREFTALLAELRAVAADNPV-AVVEGVLERTGYLSELLAE 582 Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNE-VRIM 575 E ++ L E + + L E + ++ + + V +M Sbjct: 583 DTVESQGRVENLQELVGVVQEFARRLPEGTLAEFLEQVSLVADADQVPTDDGSDGVVTLM 642 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE PVVFL VF H Sbjct: 643 TLHSAKGLEFPVVFLTGLEDGVFPHLRTLGDPT--------------------------- 675 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 EE RL YVG+TRA +L + + S + + + Sbjct: 676 -------QLEEERRLAYVGVTRARIRLYLTRAVMRSAWGQPAYNPPSRFLGEVPDTLVDW 728 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 +++ + P + E Sbjct: 729 RRLADPPPAPAGTSWGSSGGFGSGATGRGAAGAPAARKPLPNSPFSGRARPAARAVLELR 788 >gi|329770497|ref|ZP_08261875.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325] gi|328836246|gb|EGF85915.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325] Length = 728 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 96/544 (17%), Positives = 182/544 (33%), Gaps = 112/544 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + HY+ KKN VLDF+DL++ T L +K + + +I +DE QDT+ Sbjct: 168 VSEIYGHYQNYLKKNSVLDFDDLMLKTIVLFEKHPE---VLSIYQNKFQYIHVDEYQDTN 224 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +IQ+++I+ L+ + + VGD+ QSIYS+ GA ++ ++ Sbjct: 225 VIQYKLIKMLSA----------VHKNVCVVGDDDQSIYSWRGACSDNIINFEKDYDN--- 271 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I L ++RS + IL + V + + Sbjct: 272 -----VELIFLDQNYRSNSTILDAANAVIKNNTERKEKA--------------------- 305 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW +++ N + + + D + IA I + Sbjct: 306 LWS------ENKSNRKISIYGALNDKDETDD--------IARKILELNKEG--------- 342 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I+ +D+ +L R + + + I ++DL+A I+ Sbjct: 343 -IKFRDMAILYRANFLSRSMENS----CLSFGIPYKLIGSLKFLQRQEVRDLLAYLNVIV 397 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANC-GISKFQHVIKY 487 ++ D+ S ++ P + KI +++E ++ K + Sbjct: 398 NRADEFSLRRIINVPKRGIGATSMEKIDKYANEYGLSLFEALENIDMIGVSKKITTNVHL 457 Query: 488 IHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + LI + S + I + + E ++ + Sbjct: 458 LTNLIKKYSNTENYSIDELIIGIYKDSGYENMLKESSDPYAESRIENISELVSSAKQFSS 517 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + LI + + T + V + TVH AKGLE VVF++ +F Sbjct: 518 MN----DSLIDFISEMSLTSDADDENIEDAVVLSTVHAAKGLEYDVVFIMGLEESLFPS- 572 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 I +++ EE RL YV +TRA ++ Sbjct: 573 -----------------------------IRDADSSEDERNKMEEERRLAYVAITRAKER 603 Query: 662 LIIC 665 L + Sbjct: 604 LFMS 607 >gi|256957408|ref|ZP_05561579.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5] gi|257077596|ref|ZP_05571957.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1] gi|294779926|ref|ZP_06745307.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1] gi|256947904|gb|EEU64536.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5] gi|256985626|gb|EEU72928.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1] gi|294452975|gb|EFG21396.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1] Length = 752 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 91 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 151 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 559 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594 >gi|257066475|ref|YP_003152731.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] gi|256798355|gb|ACV29010.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] Length = 731 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 103/578 (17%), Positives = 185/578 (32%), Gaps = 118/578 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YEE K LDF+DLI L + ++ ++ +DE QDT+ Sbjct: 169 EIYKKYEEKKFYYNALDFDDLIDKVLYLFVRS---KETLDFYQKKFEYVFVDEYQDTNNS 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E+I+ + VGD QSIYSF GA +L ++ Sbjct: 226 QYELIKYFAGF----------HNNVTVVGDADQSIYSFRGANISNILNFEKDF------- 268 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I+L ++RST +IL + + + +LW Sbjct: 269 -KDAETIKLEQNYRSTKNILETANLLIENNSERKDK---------------------ELW 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + + A+ + I +++ Sbjct: 307 -------TENKGGDRVIYKANSVESEE-------AKFVLDNIKSLMQEG----------Y 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 AKD +L R + + D D IKDL++ + +++ Sbjct: 343 DAKDFAILYRTNAQSRPFEEILMKNLLD----YKVVGGLKFYDRKEIKDLVSYLKILVNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484 +DDLS ++ P I ++ + + T + ++ + Sbjct: 399 KDDLSLKRIINEPKRGIGNKSIEELQRVANLHNIAILDLITDDSFNTLISDRIKKSTEKF 458 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 + E+ D +L + S + E ID ++EF++ ++ Sbjct: 459 YLPLREIFDNVDNYKIVDLIEDVLDKSGYMKSLESSYSVEDRARIDNINEFISSASEYQE 518 Query: 542 NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 N+ + LE + N + +MT+H AKGLE PVVF+V +F Sbjct: 519 NNPED--NIYDYLENLSLLSDLDKTESTDNSISLMTMHAAKGLEFPVVFVVGLDEGLFPG 576 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + EE RL YV +TRA + Sbjct: 577 KRSID-----------------------------------EGNIEEERRLFYVAITRAQE 601 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 +L + N K + + N + +KI Sbjct: 602 KLFLSSAEARRNYGKPVFYKPSRFIDEIIDNIKVEEKI 639 >gi|322515360|ref|ZP_08068354.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus ureae ATCC 25976] gi|322118587|gb|EFX90815.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus ureae ATCC 25976] Length = 732 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 110/551 (19%), Positives = 190/551 (34%), Gaps = 121/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++ + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDVCDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQDDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R+ T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEKTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QAFPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 609 AKKKLTISYAE 619 >gi|255971180|ref|ZP_05421766.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1] gi|256761491|ref|ZP_05502071.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3] gi|255962198|gb|EET94674.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1] gi|256682742|gb|EEU22437.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3] gi|323479917|gb|ADX79356.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis 62] Length = 746 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 25 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 84 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 85 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 144 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 145 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 202 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 203 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 251 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 252 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 302 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 303 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 328 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 329 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 375 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 376 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 435 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 436 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 495 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 496 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 553 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 554 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 588 >gi|270308367|ref|YP_003330425.1| UvrD/REP helicase [Dehalococcoides sp. VS] gi|270154259|gb|ACZ62097.1| UvrD/REP helicase [Dehalococcoides sp. VS] Length = 738 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 185/551 (33%), Gaps = 118/551 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + YE+ K+N LDF+DL++ L K+ + + + H+++DE QD Sbjct: 167 EVVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQHPE---VLARYQERYLHVMVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+L+Q+E+++ L+ + + + VGD QSIYS+ A+ + V + Sbjct: 224 TNLVQYELVKMLSAKY----------KNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST +IL V + + +S Sbjct: 270 ----NPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + Q + F+ + A+ + I + Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 DI +L R + + Y + +KD++A R Sbjct: 342 YEKFSPGDIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480 + + +D +S ++ P + + R + ++YE + ++ K Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLGQFAREQDISLYESLVNLSDENAPKPPIPSR 457 Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535 + L+ A+ + +L R+ S G E D + E Sbjct: 458 GLKPLTDFGLLLKSLVADARNLPLLNLLDRLLEGINYREFLFASEDGEERWDNILELRTV 517 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + ++ + + L + LE + V ++T+H AKGLE PVVF+V Sbjct: 518 AQQYQEIAPP--EGLSAFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 V H + +E RL YVG Sbjct: 576 EGVLPHSRSFDDP----------------------------------AQMQEERRLCYVG 601 Query: 655 MTRASDQLIIC 665 +TRA +L + Sbjct: 602 VTRARKRLYLV 612 >gi|149914444|ref|ZP_01902975.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b] gi|149811963|gb|EDM71796.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b] Length = 786 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 111/636 (17%), Positives = 193/636 (30%), Gaps = 117/636 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+ ++ +DF DL+++ + + + + + + IL+DE QDT++ Sbjct: 195 ALYMQYQARLRELNAVDFGDLLLHVVTIFQTHED---VLAQYQRRFRFILVDEYQDTNVA 251 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + R + VGD+ QSIY + GAE +LR ++ Sbjct: 252 QYLWLRLLAG----------AHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RST IL V + + G LW Sbjct: 296 --GAKVIRLEQNYRSTPHILAAAGGVIAANKGRLGK---------------------DLW 332 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++D + AR I I M R Sbjct: 333 -------TEAEAGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGMRPF 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ +LVR + + + I+D MA R ++S Sbjct: 374 SLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLVISP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHV 484 DDL+F ++ +P + KI T R + E + G ++ + Sbjct: 430 ADDLAFERIVNTPKRGLGDKAQQKIQVTARQHGVPLVEGAAILLREKGLTGKGATELATL 489 Query: 485 IKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + + S D +IL + + E ++ L E + + Sbjct: 490 LDGLARWGRMTHDADLSHVDLAEIILDESGYTGMWQADKTPEAPGRLENLKELVKALEQF 549 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + +V IMT+H AKGLE PVVFL +F Sbjct: 550 EN--------LSGFLEHVSLIMDNESEEQGEKVSIMTLHAAKGLEFPVVFLPGWEDGLFP 601 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + + EE RL YVG+TRA Sbjct: 602 SQRS--------------------------------MDESGQKGVEEERRLAYVGITRAE 629 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + I N + + + + V A Sbjct: 630 EICTISFAGNRRVYGQWQSQMPSRFIDELPQAHVDVLTPPGLYGGAYGAAAASAGPAVQS 689 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 E + +++ + + E Sbjct: 690 GLEQAAAEANVYNSPGWRRLQARAGERPVSQPREQR 725 >gi|257080987|ref|ZP_05575348.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol] gi|256989017|gb|EEU76319.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol] Length = 752 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 91 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 151 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 559 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594 >gi|282600070|ref|ZP_05972885.2| DNA helicase II [Providencia rustigianii DSM 4541] gi|282566938|gb|EFB72473.1| DNA helicase II [Providencia rustigianii DSM 4541] Length = 764 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 118/694 (17%), Positives = 223/694 (32%), Gaps = 132/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + S + + + L S+ Sbjct: 74 GAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINHLIGTSEGGMWIGT 133 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L Q ++ + + + ++ LK + + R Sbjct: 134 FHGLAHRLLRQHYLDANLPQDFQILDSDDQYRLIRRLLKAMNLDEKQWPPRQGMWYINGK 193 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + Y+EA + ++DF +L++ ++L + + Sbjct: 194 KDEGLRPQHIESYGNPVEATWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 250 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + +IL+DE QDT+ IQ+ IR L D + VGD+ QSIY + Sbjct: 251 LQHYRERFTNILVDEFQDTNSIQYAWIRILAGD----------TGKVMIVGDDDQSIYGW 300 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R I L ++RST +IL + + + + G + Sbjct: 301 RGAQVENIQRFLNDFP--------GAETIRLEQNYRSTNNILKAANTLIANNSDRLGKN- 351 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + S F+ L + AR + Sbjct: 352 --------------------LW-------TEDGDGEPISLYCAFNELDE-------ARYV 377 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I +D +L R + ++ ++ Sbjct: 378 VGRIKQWHENGGAL----------QDCAILYRSNAQSRVLEEAL----IQSAMAYRIYGG 423 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD ++ R I ++ DD SF ++ +P E + + R + T++E Sbjct: 424 QRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGERTLDTVRQTARDQQLTLWE 483 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + S + ++ I L Q H ++ R + G Sbjct: 484 ACEYLLREQVLGGRAASSIERFLELIDALAKETQDMPLHVQADRVIKDSGLRAMYEQEKG 543 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + + L+E +N T Q+ L L + L + + + V++MT+ Sbjct: 544 EKAQARIENLEELVNATRDFSYQDEDQDLMPLQAFLSHAALESGESQADVSQDAVQLMTL 603 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVF+V +F + Sbjct: 604 HSAKGLEFPVVFMVGVEEGMFPSQMSMDESG----------------------------- 634 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA ++L I + Sbjct: 635 -----RLEEERRLAYVGITRAMEKLTITYAESRR 663 >gi|116490506|ref|YP_810050.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1] gi|290889906|ref|ZP_06552993.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429] gi|116091231|gb|ABJ56385.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1] gi|290480516|gb|EFD89153.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429] Length = 748 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 108/608 (17%), Positives = 203/608 (33%), Gaps = 119/608 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 YE ++ +DF+DLI+ T L K+ + + + + +I +DE QD Sbjct: 168 EAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQ---APDVLHYYQHKFKYIHVDEYQD 224 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q++++ L F R L VGD QSIY + GA+ +L ++ Sbjct: 225 TNGAQYKLVEMLAAGDF-------GSRNLAVVGDSDQSIYGWRGADMNNILNFEKDFP-- 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST IL ++V + + Sbjct: 276 ------GAKTVLLEQNYRSTKHILMAANQVIQNNIERKPKN------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + S S A + I + Sbjct: 311 --LW-------TNNQDGNLIHYYRA-------QSESDEAHYVLTKIQAGVKKGRSL---- 350 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D +L R + + + K I + I+D++A + Sbjct: 351 ------NDFAILFRTNAQSRIFEQVFNSNK----IQYTMVGGTRFFERKEIQDIVAYLQL 400 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISK 480 + ++D +F ++ P + I K+ + ++ + + + S Sbjct: 401 TANLDNDTAFERIVNEPKRSIGSSSIEKLRSFAAKKGLSLMKSIVVLDDESRLSKKAQSN 460 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 F+ + I + F S + I R+Q++ + E ++ LDEFL+ T Sbjct: 461 FRKFAQMIQVFSDQSHFLSLTELANEIFDQTGIREQYVKKDDLESQSRVENLDEFLSQTK 520 Query: 538 RNEQNSYSSLQE----LISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVD 592 + +Q+ E L+ L Q + +V +MTVH AKGLE PVVF+V Sbjct: 521 QFDQDYDEEASETNNPLVDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVG 580 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F +++ EE RL Y Sbjct: 581 LEEGIFPS----------------------------------ARAMMERDGLEEERRLAY 606 Query: 653 VGMTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 V +TRA ++L + + + + D + DS + E + + D Sbjct: 607 VAITRAQEELYLTNAFGRLLYGRAQSNKPSMFLDEIDDSLLDKENPSSSRTQTLSDYDRP 666 Query: 710 IAYEWSTH 717 + ++ + Sbjct: 667 MPFDRKSE 674 >gi|326336392|ref|ZP_08202563.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691566|gb|EGD33534.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 773 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 113/689 (16%), Positives = 215/689 (31%), Gaps = 122/689 (17%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K + ++ ++ I ++ F + + ++ + + +Y E K +DF+ Sbjct: 135 KYKQIASRISSYKNNLITVKAYFENHDLQEADAMAKRPRIGDIYRNYVERCFKAGAMDFD 194 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K +IL+DE QDT+ Q+ ++R+L + F Sbjct: 195 DLLLRTNELLNRFPE---VLAKYQNRFRYILVDEYQDTNHSQYLIVRALADRF------- 244 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIY+F GA + ++ K I L ++RST +I Sbjct: 245 ---QNICVVGDDAQSIYAFRGANIDNIFNFQKDYPK--------VGIYRLEQNYRSTKNI 293 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + V + V +++ + + Sbjct: 294 VEAANNVIEHNKARLEK---------------------------VVWTENENGSRIKVHR 326 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 S D+ R +A TIF ++ D VL R + I Sbjct: 327 SPTDADEG--------RFVA---------GTIFETAMQKQRSYGDFAVLYRTNSQSRAIE 369 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I H IKD++A R + ++ D+ + ++ P + Sbjct: 370 DALR----KRDIPYYIYGGLSFYQHKEIKDILAYFRLVANENDEEALQRIINFPARGIGD 425 Query: 451 DDIFKICTQRHE----------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 + K+ +E +Y K + ++ I + + Sbjct: 426 TTMEKLTLCANEFKVPIFTIIKNLATMDYGLKINSATRNRLLEFANMILSFRIMMETHDA 485 Query: 501 HDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISEL 554 I +F G E + ++E LN +Q + L+ L Sbjct: 486 FSLAEHITKRTGILNEFKKDGTPEGVERMQNIEELLNGIRDFVEGQQEVEDASNSLVEFL 545 Query: 555 EQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + + N V +MT+H AKGLE P VF+V +F Sbjct: 546 QDVALATDMDKEVEDDNRVSLMTIHLAKGLEFPYVFIVGMEEDLFPS------------- 592 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + ++ EE RL YV +TRA Q + N Sbjct: 593 ---------------------ALSQNTRAELEEERRLFYVALTRAEKQAYLTYTENRYRW 631 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K + + K K ++ ++ Sbjct: 632 GKLMDAEPSRFIEEIDERYLEYLTSKENYRY-KPLINVDTFAPIDKSKLRQQKPTNTPPP 690 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTI 762 ++ ++L + ++ I Sbjct: 691 AYKKPNEEQLKKLRLQKPEQAKAISVGDI 719 >gi|330813748|ref|YP_004357987.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp. IMCC9063] gi|327486843|gb|AEA81248.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp. IMCC9063] Length = 744 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 116/595 (19%), Positives = 200/595 (33%), Gaps = 114/595 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+E K +DF DLI++ + K IR + +IL+DE QDT+ Sbjct: 176 ALKIYRIYQERLKMMNCVDFGDLILHCVTIFKN---FKEIRESFKRNFKYILVDEFQDTN 232 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 IQ + +T D + + VGD+ QSIYS+ GAE K +L ++ Sbjct: 233 FIQNLWLNYITGD----------TKNICVVGDDDQSIYSWRGAEVKNILDFEKNFSN--- 279 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 I+L ++RST +IL + S ++ G Sbjct: 280 -----TKTIKLEQNYRSTKNILNTASSLISNNDDRLGKK--------------------- 313 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W + ++ SY D + A + I + +N Sbjct: 314 IW-------SDFSDGEKVWINSYSDGRDE-------ASGTSDIIEKELAKQFSLNN---- 355 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I +LVR T + + IKD + R I Sbjct: 356 ------ISILVRASFQTREFEERF----IRIGLPYRVIGGVKFYERAEIKDALCYLRLIH 405 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQ 482 + DDL+F ++ +P + + + KI R+ + +++ + + Sbjct: 406 QKNDDLAFERIVNTPKRSIGDTTLKKIHEFSRNSNQNLFDTSVSLLDGDELKPKTKESLK 465 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 +IK +++ +++ + +L + I E L+ ++ Sbjct: 466 LLIKNLNQWTKLSEKLDHVELLERVLDESGYTKMLIDEKSPEAEARLENLKEL-----RS 520 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 S + LI LE + ++ +MT+H AKGLE +FL +F H+ Sbjct: 521 SMKNYSNLIEFLENISLQTAIDEEWDGEKINLMTIHAAKGLEFECIFLPGWEEGMFPHQK 580 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 I+ +E RL YV +TRA +L Sbjct: 581 S--------------------------------IEEKGDVAVQEERRLAYVAITRAKQRL 608 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 I +N N + S DE KK N I +D +E+S Sbjct: 609 FISFANNRKFFGNKNDNNDWMPSMPSRFIDELDKKYLKINEIAEDPHQDFEFSQD 663 >gi|154174762|ref|YP_001408534.1| UvrD/Rep family helicase [Campylobacter curvus 525.92] gi|112803087|gb|EAU00431.1| helicase, UvrD/Rep family [Campylobacter curvus 525.92] Length = 689 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 108/546 (19%), Positives = 194/546 (35%), Gaps = 124/546 (22%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + YEE + N ++DF+DL++ T +L + + + +I +I++DE QDT+ Sbjct: 172 AAAIYDKYEEYLRANNLVDFDDLLVLTYKILDENED---LAREISNRYRYIMVDEYQDTN 228 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q++++R L + + VGD+ QSIY + GA+ + +L K + Sbjct: 229 DLQYKLLRKLCL----------THENICVVGDDDQSIYGWRGAKIENILNFKDQFKN--- 275 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 II L ++RST IL +++ N G S G+ V Sbjct: 276 -----TKIIRLEQNYRSTTPILKAANELIDHNRNRLGKKLLSV---------KGEGEGVN 321 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L + S+ A +IA +I ++ Sbjct: 322 LL--------------------------ESLDESVEAGKIAKSIKELLEKG--------- 346 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 QAKDI +L R + + +I + +KD+++ R I+ Sbjct: 347 -AQAKDIAILYRINALSRSLEDGL----TKERIPYKMVGGVKFYERAEVKDVISYLRLII 401 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--------EYIQKFANCGISKF 481 +Q DD S ++ P + + K+ +E +T + + F+ + Sbjct: 402 NQNDDFSLKRIINRPKRGLGKVSLDKLEKMAYEGKTSMFDAILNIDDKDEAFSKKIKTAL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE 540 + + EL S ++ + ++ + S GNE +DEF Sbjct: 462 VEFTQILKELQE---TNSLYELIDKMEAKFGIKKYYESLPDGNERAANIDEFYAMLKDQI 518 Query: 541 QNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + S L+E ++EL + + IM+VH +KGLE +F++ F Sbjct: 519 KQNPSFELEEFLNELALVSEQDNI----SSEAISIMSVHASKGLEFEYLFVIGLEEGFFP 574 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 S EE RL YV +TRA Sbjct: 575 -------------------------------------LIGDGSDIEEERRLAYVAITRAK 597 Query: 660 DQLIIC 665 L + Sbjct: 598 KLLTLS 603 >gi|29375317|ref|NP_814471.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583] gi|256617608|ref|ZP_05474454.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200] gi|256854412|ref|ZP_05559776.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8] gi|256959857|ref|ZP_05564028.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96] gi|256964441|ref|ZP_05568612.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704] gi|257083649|ref|ZP_05578010.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1] gi|257086081|ref|ZP_05580442.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6] gi|257089148|ref|ZP_05583509.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188] gi|257415291|ref|ZP_05592285.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis AR01/DG] gi|257418333|ref|ZP_05595327.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11] gi|300861762|ref|ZP_07107842.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11] gi|29342777|gb|AAO80541.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583] gi|256597135|gb|EEU16311.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200] gi|256709972|gb|EEU25016.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8] gi|256950353|gb|EEU66985.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96] gi|256954937|gb|EEU71569.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704] gi|256991679|gb|EEU78981.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1] gi|256994111|gb|EEU81413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6] gi|256997960|gb|EEU84480.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188] gi|257157119|gb|EEU87079.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ARO1/DG] gi|257160161|gb|EEU90121.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11] gi|300848287|gb|EFK76044.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11] Length = 752 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 91 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 151 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 559 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594 >gi|327459916|gb|EGF06256.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1057] Length = 762 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLIYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+++++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRNVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + D +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 ++ + S L +L L + +EV +MT+H AKGLE PVVFLV Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLNYQGLARPA 651 >gi|295697356|ref|YP_003590594.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912] gi|295412958|gb|ADG07450.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912] Length = 755 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 121/743 (16%), Positives = 234/743 (31%), Gaps = 133/743 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + + ++ L + Sbjct: 38 GAGSGKTRVLTHRVAYLVATRKAPPWGILAITFTNKAAREMRERIGRLVGPEAEEIWVST 97 Query: 66 FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------ 116 F L + P ++ + + ++ +K+ L + + K R Sbjct: 98 FHSYCVRVLRRHIEPLGFTRSFSILDASDQTTAVKQVLGEMNLDTKKFDPRRMAGAISAL 157 Query: 117 -------YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 + + + + Y++ + N LDF+DL++ T +L D Sbjct: 158 KNELITPSQAAERARDFFQEVVAQVYERYQQKLRVNNALDFDDLLVKTVELW---DAFPE 214 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++ +DE QDT+ Q+E+++ L + R L VGD Q+IY Sbjct: 215 TLEDQQRRFVYLHVDEYQDTNHAQYELVKRLAQ----------RRRNLCVVGDSDQAIYG 264 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L + +I+L ++RST IL + V + + Sbjct: 265 WRGADVRNILDFEADYP--------DAKVIKLEQNYRSTGRILAAANAVIAHNRQRKEKR 316 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 S + D + A Sbjct: 317 LWSDRP----------------------------QGEPVIVHEAMDEQGE-------AYF 341 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I N + + D+ VL R + ++ + I V Sbjct: 342 VVEEIRNHVEQGG----------RYGDVAVLYRMGAQSRVLEEMM----MKASIPYVMVG 387 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 + IKDL+A R +++ DD S ++ P E + K ++Y Sbjct: 388 GVKFYERKEIKDLLAYLRILVNPRDDFSTERVINVPKRGIGEGTLTKAAAFAAERNLSLY 447 Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E ++K +S + + L + + S + +L R+ I Sbjct: 448 EALEKVDQLDVSARAAAGIRQFVDLTAALRAMMPYLSVTELVEEVLNRTGYREALIREDT 507 Query: 523 NEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 E + L+EFL+ T ++ ++ L + L + + V +MT+H Sbjct: 508 LEAQSRLENLEEFLSVTQEFDRRQDTAAEGGLEAFLADVALVSDLDMAETEDGVVLMTLH 567 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE PVVFLV +F H + Sbjct: 568 SAKGLEFPVVFLVGMEEGIFPHSRVLDDP------------------------------- 596 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN--DERVK 696 EE RL YVG+TRA D+L+I + + + + + Sbjct: 597 ---DQMEEERRLCYVGITRAMDRLLITRAQQRNLYGRWQANPPSRFLEEIPEALLQWSAP 653 Query: 697 KIKLTNSINKDEWIAYEWSTHHP 719 + L + E A + + P Sbjct: 654 RRSLRDRAAAPEPAAGKGALAWP 676 >gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] Length = 828 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 107/650 (16%), Positives = 192/650 (29%), Gaps = 148/650 (22%) Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ + S + + A Y+ + DF+DLI T LL Sbjct: 172 ELVGPEQAVEAAASDEPAAQQIARIYAEYQRRLRAANAFDFDDLIGETVALLHAHPE--- 228 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + H+L+DE QDT+ Q+ +IR L + S L VGD QSIY+ Sbjct: 229 VAEYYRRRFRHVLVDEYQDTNHAQYVLIRELVGEVPTAGGLEPSE--LCVVGDADQSIYA 286 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F GA + + +R I L ++RST IL+ + V + EN + Sbjct: 287 FRGATIRNIEEFERDFPN--------AETILLEQNYRSTQTILSAANAVIARNENRRDKR 338 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW DS + + D Sbjct: 339 ---------------------LW------TDSGDGELIVGYVADSDRDEST--------F 363 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 IA I ++ +S G + DI V R + + + + I Sbjct: 364 IAKEIESLTD----YSIGGSSSHKYSDIAVFYRTNTGSRALEEVF----VRHGIPYKVVG 415 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467 + ++D++A R + + +D +S +L +P + + + + Y Sbjct: 416 GTKFYERKEVRDVVAYLRVVANPDDAVSLRRILNTPRRGIGDRAEACVAVHSENTGRSFY 475 Query: 468 EYIQKFA--------NCGISKFQHVIKYIHELIHIAQF---------------------C 498 E + A I + + I L Sbjct: 476 ESLIDAAAGKVAMLNTRAIKQIGGFVDLIEGLRTDFLTAFGAAGESDEDVAFIDATEEGA 535 Query: 499 SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---------------- 539 + I+ R + + + +D L+E ++ Sbjct: 536 DIGELVDAIVERTGYRGELEASNDPQDGARLDNLNELISVAQEFSRDAAELAEDEAADDD 595 Query: 540 -------EQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFL 590 + L + LE+ V +MT+HTAKGLE PVVF+ Sbjct: 596 DPLESGRDTEGEPDPGSLAAFLERVSLVADADQLPDEGEGVVTMMTLHTAKGLEFPVVFV 655 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 F H + + E RL Sbjct: 656 TGWEDGHFPH----------------------------------MRAMGDPAELSEERRL 681 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 YVG+TRA ++L + + ++ + + + + ++ + Sbjct: 682 AYVGITRAKERLYLTRSITRASWGQPVSNPESRFLQEIPQHLLDWRRTEP 731 >gi|296127315|ref|YP_003634567.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563] gi|296019131|gb|ADG72368.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563] Length = 666 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 96/593 (16%), Positives = 190/593 (32%), Gaps = 123/593 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 AK + Y+ K +DF DLI T DL + K + +I++DE QDT+ Sbjct: 163 AKRVYEVYQNYLKGYNAVDFNDLINLTIDL---YIEFPEVLNKYQERFRYIMVDEYQDTN 219 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+++ L + R + VGD+ QSIY+F GA+ +L + Sbjct: 220 FAQYKLTSLLASKY----------RNIAVVGDDDQSIYAFRGADVSNILSFENEYP---- 265 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 I+ L ++RST IL V S + + G Sbjct: 266 ----DAKIVTLTKNYRSTKAILEAAHSVISNNTQRKNKEVVAE-------------GDEG 308 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + ++ D + A+ +A +I + + Sbjct: 309 IPPTIMPCEDERE----------------------EAQFVADSI---------INYSISK 337 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + +D VL R + L R + F + IKD++A + Sbjct: 338 RLNYEDFAVLFRMNAQSRLFEEAFR----LRGLPYTVVGAFQFYERKEIKDILAYLNLFV 393 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKFANCGISKFQ 482 + ED++S + ++ P I + + YE ++ + + + Sbjct: 394 NPEDEVSLLRVINIPKRGIGAVAINNLNEASIKNGVSLYQTLLNYESMEDISPKAKAGIK 453 Query: 483 HVIKYIHELIHI-------AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLD 530 ++ I ++ + ++ L + ++ G + ++ ++ Sbjct: 454 DFLEIIEHYHNLFTVDKNDIERPKLYENINKFLDVIAYHNEILNSSDTKEQGAKKMENVE 513 Query: 531 EFLNFTLRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 +N L E+++ ++L+ + + + + +M++H AKGLE P V+ Sbjct: 514 SLMNGILEYEKSNKNATLKNYLDRILLMSIEEQNDDEEKKKGIMLMSIHAAKGLEFPYVY 573 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 + + H + EE R Sbjct: 574 ICGMEDGIMPH----------------------------------HKSSSDEMGIEEERR 599 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 L YV MTRA L + + + K + T + + N + Sbjct: 600 LCYVAMTRAKKHLTLTYCRSRTKMGKKVECTPSIFLEEMSENLPEEMSMNEEE 652 >gi|324995484|gb|EGC27396.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK678] Length = 762 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 95/589 (16%), Positives = 186/589 (31%), Gaps = 119/589 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + + +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 +++ + L +L L + +EV +MT+H AKGLE PVVFLV Sbjct: 516 FDESPDNPADETGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLDYQGLARP 650 >gi|312872971|ref|ZP_07733031.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2062A-h1] gi|311091493|gb|EFQ49877.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2062A-h1] Length = 779 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 132/804 (16%), Positives = 257/804 (31%), Gaps = 110/804 (13%) Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F A+P L++ + I L +FRS+ ++ +V+ + Sbjct: 1 MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQS-----ERIILSDNFRSSKNVTQIVNNI 55 Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 F EN G++ +++ + +GT + S D Q ++ + D Sbjct: 56 FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKQSIADEDEEVNDLD 115 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + I + D + KR I+ DI +L R + + Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + K+ + +D + + + I + + D+ V +++SPL+ F+E Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221 Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLI 507 + KI + + Y+ I + + ++ I + + + + I Sbjct: 222 EFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCKNFINELSHFRNFSIDHRISELICDI 280 Query: 508 LGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561 + G + L+ E + + L + I+ +++ + Sbjct: 281 FQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQ 340 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + +++MT+H +KGLE P+VFL+ + I G+ I Sbjct: 341 PLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTIT 398 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679 + + + S K EE R+LYVG+TRA +LI+ Q Sbjct: 399 TADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANEKIIPDFQNQL 458 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT----------------- 722 ++ + ++ L + + S E Sbjct: 459 DAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQP 518 Query: 723 ----------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 P + T +I K P + + Sbjct: 519 SVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNS 578 Query: 755 YILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809 ++N + ++ + L G +H LLQ + I + Sbjct: 579 KLINSANKYLMPISDKPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 638 Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857 +N +L A S + Y E+ S N Sbjct: 639 LQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFND 696 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKD 913 I++ G ID I I +F+YKT +E ++ + QLS+Y L + Sbjct: 697 VNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNN 756 Query: 914 SYPNKSLVC-LLIYVSEPKVFIIP 936 +K + LI +S K+ + Sbjct: 757 L-SDKKVKAKYLILLSINKIVKVD 779 >gi|291615299|ref|YP_003525456.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1] gi|291585411|gb|ADE13069.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1] Length = 722 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 100/653 (15%), Positives = 208/653 (31%), Gaps = 119/653 (18%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 ++ Q+ +++ ++ + A Y+ ++ V+DF +L++ +LL Sbjct: 139 REMQNFISGSKEQGLRAHEVEAYDPYTRRKVEVFAEYDAQCQREGVVDFSELLLRCYELL 198 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + +R + HIL+DE QDT+ +Q+ ++ L LFAVG Sbjct: 199 SRN---QPLREHYQERFKHILVDEFQDTNPLQYRWLKLLAGQ----------NNALFAVG 245 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + R Q ++I+L ++RS +IL + + Sbjct: 246 DDDQSIYAFRGANVGNMQELLRDFQVE--------NVIKLEQNYRSHGNILDAANALIQN 297 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 N G + LW D+ Q + + D Sbjct: 298 NRNRLGKN---------------------LW------TDADKGEQIRVYEAGTD------ 324 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A + I + ++ ++ +L R + ++ Sbjct: 325 --VDEAAFLVEEIRQLNREG----------VRLSEMALLYRSNAQSRVLEHAL----VSA 368 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 +S + IK +A R + + +DD + + ++ P I ++ Sbjct: 369 GLSYRVYGGLRFFERQEIKHALAYLRLMENTDDDNALLRIINFPTRGIGARSIEQLQEAA 428 Query: 461 HE-TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + T+++ + K + I L Q + +L + + Sbjct: 429 KQYNTTLWDAAARAG----GKVTAFVGIIESLRSGTQNLPLPEIIEHVLQHSGLADHYKN 484 Query: 520 RFG------NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 G E ++ L+E + +N SL ++ + + + Sbjct: 485 ETGAKKREAEERLENLNELITAATMFVHENEDDSLTAFLTHASLEAGE--HQAGDSEDAL 542 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MTVH AKGLE VF+ +F H++ Sbjct: 543 HLMTVHAAKGLEFHTVFITGLEESLFPHQNSID--------------------------- 575 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 +E RL+YV +TRA +L + + +++ + + Sbjct: 576 --------NGDLDEERRLMYVAITRARRRLYLTFAQSRMLHGQTHYGMASSFLRELPEEL 627 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 +++ S + E+ +I +++F Sbjct: 628 LHWITPRVSARKTFHTSSFETNSYVNAFAATPALEKAPPAPSSVWRIGQRVFH 680 >gi|161723247|ref|YP_095868.2| DNA-dependent helicase II [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 721 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 109/580 (18%), Positives = 191/580 (32%), Gaps = 117/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ + + V+DF +L++ T++LL+ + I + IL+DE QDT+ I Sbjct: 172 AIYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE---ILAHYRERFQAILVDEFQDTNTI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + AVGD+ QSIY + GA+ + + + Sbjct: 229 QYAWIRLLAGDHTA----------VLAVGDDDQSIYGWRGAKVENIQQFVHDF------- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + II L ++RSTA IL + + G +LW Sbjct: 272 -KDTHIIRLEQNYRSTAMILNAANALILNNSTRMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ S F+ L + AR + I + Sbjct: 310 -------TAGSEGEKILVYSAFNELDE-------ARFVTERIGMELNQG----------A 345 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 A +I VL R + ++ I+ D IKD +A R +++ Sbjct: 346 SADEIAVLYRSNAQSRVLEEAL----LRAGIAYRIYGGVRFFDRAEIKDTLAYLRLLVNP 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ P E + ++ R E +++ + G Sbjct: 402 NDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSLWGASKGILQSTGLGQRGSLALAKF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN-- 539 I I +L + + + ++ + +D L E +N + Sbjct: 462 IDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKIKGDKSESRVDNLQELINAAKQFRY 521 Query: 540 EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E + L + S L + V +MT+H AKGLE P+VFLV +F Sbjct: 522 EYDEEEELPLVNSFLAHASLESGELQADEHERSVHLMTLHAAKGLEFPIVFLVGMEEGIF 581 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + EE RL YVGMTRA Sbjct: 582 PGRQSLEEPG----------------------------------RLEEERRLCYVGMTRA 607 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 +L++ + + + ++ Sbjct: 608 MRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLDEVRV 647 >gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4] gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4] Length = 827 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 191/643 (29%), Gaps = 141/643 (21%) Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + K L + HY++ + LDF+DLI T +L+ + Sbjct: 179 VDPEQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQ---AFPQV 235 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS--PRTLFAVGDEKQSIY 227 + H+L+DE QDT+ Q+ ++R L G++ P L VGD QSIY Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGSTADGEDADHRVAPAELCVVGDADQSIY 295 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA + + +R I L ++RST +IL+ + V S + Sbjct: 296 AFRGATIRNIEEFERDYP--------DARTILLEQNYRSTQNILSAANSVISKNTGRREK 347 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW + + + + A Sbjct: 348 R---------------------LW-------TDSGEGELITGYVADNEHDE-------AS 372 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I ++ + + D+ V R + + + + Sbjct: 373 FVASEIDKLVDSG---------DAKFGDVAVFYRTNNSSRALEEIF----IRLGVPYKVV 419 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 + ++D++A R + +++D +S +L +P + + + Sbjct: 420 GGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEQRGISF 479 Query: 467 YEYIQK--------FANCGISKFQHVIKYIHELIHIAQFCS------------PHDFFTL 506 E ++ ++ + L + + D Sbjct: 480 AEALRDGGEGRVRLLNTRSQKAIASFLELMDGLRVLMPPETTADDIVPDQLGDIGDVVEA 539 Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--------------------EQNS 543 +L R + + + +D L+E ++ ++ Sbjct: 540 VLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDG 599 Query: 544 YSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + LE+ + V +MT+HTAKGLE PVVF+ F H Sbjct: 600 EPDPGSLAAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHM 659 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 E RL YVG+TRA + Sbjct: 660 RALGDPT----------------------------------ELSEERRLAYVGITRARQR 685 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 L + + S + Q + + + ++ + Sbjct: 686 LYLTRAVMRSAWGQPIQNPESRFLQEIPSDLVHWRREDPGPRL 728 >gi|300114627|ref|YP_003761202.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] gi|299540564|gb|ADJ28881.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] Length = 1147 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 163/951 (17%), Positives = 310/951 (32%), Gaps = 110/951 (11%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 S +DLW P Q + ++ LS + Q + R Sbjct: 258 APASPIQACRDLWKRPGTQAEALPHWLGLSQLLLTNGGEWRRQANKNIGFPAPSAARGQE 317 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 F K + + + L+ L + + T ++ A Sbjct: 318 EKQFL---KEQKRAFLDFLARLEGEEALRCALHDLRF----LPSASYTATQWQLMEALFQ 370 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L A + A ++ +DF ++ L + + + +D +I H+L+DE QDT Sbjct: 371 LLPLAVAQLQLAFQERGEVDFTEVAQRAVAALGEAEAPTDLALALDYQIRHLLMDEFQDT 430 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 SL Q+ ++ LT + G+ RTL VGD QSIY F AE L+ R Sbjct: 431 SLSQYILLERLTIGWEAGEG-----RTLLVVGDPMQSIYRFREAEVGLYLQAWRQ----- 480 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + + L ++FRS I+ V++ F Sbjct: 481 GIGQLPLTPLTLSVNFRSQQGIVNWVNQSFRQI----------------------LPAAQ 518 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 ++ V S + + E + A R+ + I + Sbjct: 519 EIATGAVPYSQSHAFHPLLAAPAVQVHPFFEKDSLTEAERVVHLIQQ-----------TR 567 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + I +LVR R I L R + + L ++DL+AL + + Sbjct: 568 QATPNSTIAILVRSRGHLAGIVPLLRE----AGLGFRALEIEPLGSRPVVQDLLALTKAL 623 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQH 483 D LS++ +L++P + D++ + + IQ+ + G + Sbjct: 624 FHLGDRLSWLTVLRAPWCGLTLADLYVLAGEDKQAAIWDRIQEDACIQRLSEEGRERLGR 683 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQN 542 + + + + + SP + A G E LD + +E Sbjct: 684 LRQVFAKALEERRRTSPRRQVEGVWLALGGPACVADSIALEEASVYLDLLEGEAVADEIL 743 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 + +L+E ++ L ++IMT+H AKGLE V + G H Sbjct: 744 DFRALEESVARLFA------PPDREADETLQIMTIHRAKGLEFDTVIVPGLGCPPRHESH 797 Query: 603 IKKMH-------IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + S+++I + + ++ + E RLLYV + Sbjct: 798 QLLLWAERPTAHYSAGNKGALLLAPITGVGGSQDSIYQHIKRLHEEKGEFENGRLLYVAV 857 Query: 656 TRASDQLIICKHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 TRA +L + + KK+ + ++ + +K E Sbjct: 858 TRAKHRLHLLGQVELDDTGKKTKMPSKRSLLASLW------PAVKEKFEAAALLQRETEI 911 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 + I +L + + P + + + P + ++E Sbjct: 912 REEGTDLADSPISGFISRLSTQWQCPAPMAGVRVDIGDLPEV-------APALDSIEFDW 964 Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRK--------NFITSYCTKNAKLWPAKE--YKNL 824 + + G ++H+ LQ+I + + + E + Sbjct: 965 AGETARHIGTVVHRYLQIIAEEGPEHWGLTRIMALAPALRQALRQQGVVADEMENAMERA 1024 Query: 825 LLSITRLLENPMMTTAMS---CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI-FI 880 + + LENP ++ + +E ++SG +N II ID+ I + + +I Sbjct: 1025 REVLGQTLENPRGRWILASNHRQARNEYALSGVLN----GRIIRAVIDRTFIDEAGVRWI 1080 Query: 881 FEYKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSYPN-KSLVCLLIY 926 +YKT H + E + AQL Y ++ P + + L Y Sbjct: 1081 VDYKTGTHEGGDREEFLNREQERYHAQLERYAALMALKAPETEKIRLGLYY 1131 >gi|322385749|ref|ZP_08059393.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC 51100] gi|321270487|gb|EFX53403.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC 51100] Length = 762 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 98/592 (16%), Positives = 187/592 (31%), Gaps = 123/592 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKANIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ E Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFAASQEISLLEASANIMLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I +L S + L+L ++ E I+ ++EFL+ T Sbjct: 456 YEFANLILDLRDRLDDYSVTELVELVLKKTGYAAALAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQN--------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 ++N L +++L T ++ V +MT+H AKGLE PVVFL Sbjct: 516 FDENPDNPADETGLDKLSRFLNDLALIADTDDGDMESSE--VTLMTLHAAKGLEFPVVFL 573 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 V VF + Sbjct: 574 VGMEENVFPLSRASEDEDELEEERRL---------------------------------- 599 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YVG+TRA L + ++ ++N + + + + + Sbjct: 600 AYVGITRAEKILYLTNANSRLLYGRTNYNQPTRFLREISSDLLNYQGLARPA 651 >gi|324990953|gb|EGC22888.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK353] Length = 762 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVDKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + + +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDYTVTELVEAVLEKTGYAAALAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 +++ S L +L L + +EV +MT+H AKGLE PVVFLV Sbjct: 516 FDESPDNPADESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNQPTRFLREISSDLLDYQGLARPA 651 >gi|118587527|ref|ZP_01544951.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163] gi|118431978|gb|EAV38720.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163] Length = 748 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 108/608 (17%), Positives = 203/608 (33%), Gaps = 119/608 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 YE ++ +DF+DLI+ T L K+ + + + + +I +DE QD Sbjct: 168 EAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQ---APDVLHYYQHKFKYIHVDEYQD 224 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q++++ L F R L VGD QSIY + GA+ +L ++ Sbjct: 225 TNGAQYKLVEMLAAGDF-------GSRNLAVVGDSDQSIYGWRGADMNNILNFEKDFP-- 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST IL ++V + + Sbjct: 276 ------GAKTVLLEQNYRSTKHILMAANQVIQNNIERKPKN------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + S S A + I + Sbjct: 311 --LW-------TNNQDGNLIHYYRA-------QSESDEAHYVLTKIQEGVKKGRSL---- 350 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D +L R + + + K I + I+D++A + Sbjct: 351 ------NDFAILFRTNAQSRIFEQVFNSNK----IQYTMVGGTRFFERKEIQDIVAYLQL 400 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISK 480 + ++D +F ++ P + I K+ + ++ + + + S Sbjct: 401 TANLDNDTAFERIVNEPKRSIGSSSIEKLRSFAAKKGLSLMKSIVVLDDESRLSKKAQSN 460 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 F+ + I + F S + I R+Q++ + E ++ LDEFL+ T Sbjct: 461 FRKFAQMIQVFSDQSHFLSLTELANEIFDQTGIREQYVKKDDLESQSRVENLDEFLSQTK 520 Query: 538 RNEQNSYSSLQE----LISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVD 592 + +Q+ E L+ L Q + +V +MTVH AKGLE PVVF+V Sbjct: 521 QFDQDYDEEASETNNPLVDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVG 580 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F +++ EE RL Y Sbjct: 581 LEEGIFPS----------------------------------ARAMMERDGLEEERRLAY 606 Query: 653 VGMTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 V +TRA ++L + + + + D + DS + E + + D Sbjct: 607 VAITRAQEELYLTNAFGRLLYGRAQSNEPSMFLDEIDDSLLDKENPSSSRTQTLSDYDRP 666 Query: 710 IAYEWSTH 717 + ++ + Sbjct: 667 MPFDRKSE 674 >gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [Desulfitobacterium hafniense Y51] gi|122483028|sp|Q24WW8|ADDA_DESHY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|89333879|dbj|BAE83474.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1392 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 142/849 (16%), Positives = 274/849 (32%), Gaps = 107/849 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 P+ S + ++ E G + ++ A A+ L + ++ + Sbjct: 250 YLPVLEDDQSRL-GFLREMAEKGTWSDIETAFK-SAAAFPGLPRGSKKNLPDSLIDEENS 307 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 + +++ ++ E++K + KM + + ++ Y++ Sbjct: 308 KRLREESKKARDEAKKKLEEIKNTVFSVPLTDQLPFLNKMGELVGTLAQVTQHFAREYQK 367 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 AK++ +DF DL LL K I K+ +L+DE QD + +Q +++ + Sbjct: 368 AKRQRNCVDFSDLEHYALQLLAKDKQPTEIALKLQAYYAEVLVDEYQDINPVQERILQLV 427 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS-II 258 + LF VGD KQSIY F A+P LR+ G + +I Sbjct: 428 SR-------QEEGKANLFMVGDVKQSIYRFRMADPGLFLRKYGEFPHYQEGGGAAPNLVI 480 Query: 259 ELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQV------GTVQL 310 +L +FRS +++ ++ +F E A + D +R + + G +++ Sbjct: 481 DLNQNFRSRPEVIQGINYLFYQIMTEGAGEIIYDEQAALRPGAKFVSDGELRTAEGPIEV 540 Query: 311 W--------------------------EQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + + N + ES SL + +A I Sbjct: 541 HLFDPKAIDLSLGQKRGAEDAATGADSPAKGEGEEFEQNREPESGDDES-SLEEAETARI 599 Query: 345 LARRIAYTISNMIGTD----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR +A I M+ G R +Q DI++L+R + + Sbjct: 600 EARLVAARIQKMVLEREFQIHDKELGDYRPVQYADIVILMRS---LASVASVYAEEFQKA 656 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--- 457 I V + +++L + I + D+ F +L+SPL + ++ K+ Sbjct: 657 GIPVYAETNSGYFGTNEVDTVLSLLKIIDNPRLDIPFAAVLRSPLVGMNGTELGKLRSLL 716 Query: 458 ------------------TQRHETETVYEYIQKFANCGISKFQ----------------- 482 ++ E Y I++ Sbjct: 717 PQGDFYETLVLTFWAGDAHRQEEGHEFYSEIREILGKHWESLPQLEVKVRHILETSPEIK 776 Query: 483 ----HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTL 537 + E H ++ S D + G + L + Sbjct: 777 EKVDAFFPKLQEWRHRSRRTSLADLLWHLYEDTGYLAYVGTLPAGAQRQANLRVLYDRAC 836 Query: 538 RNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 R E +Y L + LE+ N VR +TVH++KGLE PVVF+ Sbjct: 837 RYEATNYRGLFRFLRFLEKFQSQGKDLGNASIVGEKENVVRFITVHSSKGLEFPVVFIAG 896 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 G + + ++ + L + Q + + I + + L + E R+LY Sbjct: 897 LGKKFNTRSLSSQLLLHSHLGVGIPLIDIENQVRYPSVIQYAVKERLWQEALAEELRILY 956 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TR ++L + H + E + R+ D +L + +W+ Sbjct: 957 VALTRGKERLFLFGHQHKLAEAINKWRSLALSC-----PDTAFPDGQLRGAKTYLDWLGP 1011 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 H + L T +L D K + S + + Sbjct: 1012 ALVRHPEDLFKLGSFPTASELPDSSSQWKVILHDQIAGKGPVQEATSSQDEI--ILPDQE 1069 Query: 773 LLSDNQTFN 781 L + + Sbjct: 1070 TLGEREASE 1078 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 98/303 (32%), Gaps = 22/303 (7%) Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + E K+++ T + T ++ ++ + W +PE Sbjct: 1089 SGKTEIPGETKNSEETKTSEDKKNLEAQTPETADLDTKNLQEEVFRQLNWQYPYPEGVNQ 1148 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784 + ++ +L Q + + + + + + + RG Sbjct: 1149 SAKTSVSELK-RQSLWYMDNEYSSPSSSSSSSPSALSAPSFLRPQFIVSRKELTPAERGT 1207 Query: 785 IIHKLLQVIF-----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-------SITRLL 832 +H +Q + E + S ++ +E + + LL Sbjct: 1208 AVHAAIQHLPLALWRDTWEELAQEVRESMLQEHIDSLIRREILSAEQGGAVSVSQLKNLL 1267 Query: 833 ENPMMTTAM-SCDSYSEVSV--SGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKTH- 886 ++ + + EV S ++ K+ +++ G ID + +S + + ++KT Sbjct: 1268 DSTSGKRLWEAEEVRREVPFTLSLRLRAQKEPVLVQGIIDAVLLSHQEHEAQVMDFKTDN 1327 Query: 887 -HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIPQNKLNKAF 944 VP + + QL +Y ++ + +IY S + F++ + + A Sbjct: 1328 LAGVPDPELVLTQRYGLQLGLYALAVERLLKV-PVRECIIYATSLNREFVMQREAVQAAL 1386 Query: 945 AEI 947 + Sbjct: 1387 ESV 1389 >gi|150024958|ref|YP_001295784.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum JIP02/86] gi|149771499|emb|CAL42968.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum JIP02/86] Length = 777 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 105/636 (16%), Positives = 201/636 (31%), Gaps = 122/636 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y E K +DF+DL++ TN+LL + + K +IL+DE QDT+ Sbjct: 175 LGEIYQQYVERCFKAGAMDFDDLLLKTNELLTRFPE---VLLKYQDRFRYILVDEYQDTN 231 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++R+L++ F + + VGD+ QSIY F GA +L ++ + Sbjct: 232 HSQYLIVRALSDRF----------QNICVVGDDAQSIYGFRGANINNILNFQKDYEN--- 278 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + L ++RS+ +I+ + V + Sbjct: 279 -----VKMFRLEQNYRSSKNIVEAANSVIDKNKTKLDKV--------------------- 312 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W + + + + + R +A I ++ Sbjct: 313 VWTANDFGQKIK--------------VNRSVTDNDEGRFVAGEI---------WTQKMTN 349 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + +L R + + R I IKD++ R ++ Sbjct: 350 QMTNGQFAILYRTNAQSRAMEDALR----KRDIPYRIYGGLSFYQRKEIKDVLCYLRLVI 405 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ-------KFANCGISKF 481 + +D+ + + ++ P + I K+ + +++E +Q K + +K Sbjct: 406 NPKDEEALIRVINYPARGIGDTTIEKLTIAANHYKRSIFEVMQVIDKIDLKLNSGTKAKL 465 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 Q + I I + + Q+ E I+ ++E LN Sbjct: 466 QDFVTMIKSFQAINETQDAFYLADHVAKKTGYIQELKKDGTPEGIARIENIEELLNGIKD 525 Query: 539 NEQNSYS------SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 +L E + ++ T +++ + V +MT+H AKGLE P VF+V Sbjct: 526 FTDGQVEVDGARGALSEFLEDVALA--TDLDKDTSDDDRVALMTIHLAKGLEFPTVFVVG 583 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F + +S EE RL Y Sbjct: 584 MEEDLFPS----------------------------------AMSMSTRSELEEERRLFY 609 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA Q + + K + + TN K + Sbjct: 610 VALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIEEINGEYLEYITPPETNYRYKPQIDHD 669 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + L + T KL + I+ Sbjct: 670 IFGDVDKSKLRLAKPITGTPPKYIANNEPKLDTNIR 705 >gi|325679430|ref|ZP_08159015.1| putative ATP-dependent DNA helicase PcrA [Ruminococcus albus 8] gi|324109027|gb|EGC03258.1| putative ATP-dependent DNA helicase PcrA [Ruminococcus albus 8] Length = 782 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 101/615 (16%), Positives = 192/615 (31%), Gaps = 113/615 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y+ + + +DF+D+I +T DL +K+ + +I++DE QDT+ Sbjct: 222 ARIYKRYQAELRASNAMDFDDIICHTVDLFEKQPD---VLDHYQNLYKYIMVDEYQDTNK 278 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ ++ L++ + + VGD+ QSIY F GA + +L + R + Sbjct: 279 VQFRLVSLLSQKY----------GNICVVGDDDQSIYRFRGATIENILNFEEEFGCRPED 328 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST +ILT +K+ S +G + L Sbjct: 329 ------VIKLEQNYRSTQNILTCANKLISHNVGRKGKN---------------------L 361 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + ++ + A IA I+ Sbjct: 362 W-------TDSGDGEKVIVHKSMTEREE-------ASYIAKIITENTEKGR--------- 398 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + D +L R + + I D +KD++A I + Sbjct: 399 -RYGDHAILYRMNAQSNALEQAM----IKASIPYKIFGGLKFYDRKEVKDILAYLEVINN 453 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHV 484 D ++ P + + I + YI + + + Sbjct: 454 HSDMFRLRRIINEPKRGIGDATVRVIDQIVSDLGEDAIYIMEHSPEYVPLAKKSKALTEF 513 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRN-EQ 541 I +L +A + + ++ + + G ++ ++E + + E+ Sbjct: 514 AFMIDDLTDLADISTLPELLDAVVDKTGYGSYLLQQGLEGEARLENIEELKSTMAKYEEE 573 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 SL+ + E+ Y N + V +MT+H AKGLE PVVF+ VF Sbjct: 574 AEEPSLEGFLEEVALYTDIDT--LDENGDYVALMTMHAAKGLEFPVVFVAGLEDNVFPSS 631 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 EE RL YV +TRA ++ Sbjct: 632 ----------------------------------RSMESDIEIEEERRLAYVALTRAKEE 657 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L + + + + + + KL+ Sbjct: 658 LHLVYAGERMIFGNVQRNRESMFLRELPKENIEEQVPKLSEGAAPTANPNLSLGKQIAMY 717 Query: 722 TPLEREETIKQLMDE 736 +R ET Sbjct: 718 NAAKRSETSASSESY 732 >gi|95930575|ref|ZP_01313310.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95133410|gb|EAT15074.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 747 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 108/641 (16%), Positives = 196/641 (30%), Gaps = 116/641 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + HY++ ++ LDF DL++ L + + IR + H+L+DE QD Sbjct: 164 QVIADVYRHYQQRLQQANALDFGDLLLMCVKLFDEHEE---IRQRYAGRFLHLLVDEFQD 220 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+++Q+ +++ L + L VGD+ QSIY + GAE +L +R Sbjct: 221 TNMVQYRLVQQLASE----------HGNLCVVGDDDQSIYRWRGAEVGNILGFERDYP-- 268 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I L ++RST IL V + +G + Sbjct: 269 ------GCTTIRLEQNYRSTTTILDAAGAVVANNVGRKGKT------------------- 303 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + + D L + AR + + + Sbjct: 304 --LW-------TENPDGEAITLEALPDDLEE-------ARYVVDQLKALQQGGR------ 341 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +DI +L R + ++ +I V + +KD++A R Sbjct: 342 ----HLRDIAMLYRTNAQSRVLEEAL----VRERIPYVMFGGMRFFARMEVKDVLAYLRV 393 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK------F 481 + + D +S ++ P + KI T + + + + G+ K Sbjct: 394 LTNPADTISCQRIINVPTRGIGATTVAKIATLEQQAQGFFPACRLAVEQGVLKGAAAKKV 453 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + + + + ++ Q S E D LD ++ L + Sbjct: 454 AAFVAMMEDFASRLERLPYPQLAAELIEETGYAQMLKSENTQEARDRLDN-IDQLLAGME 512 Query: 542 NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L LEQ ++ + V +MT+H AKGLE PVVF+ +F Sbjct: 513 EHRDEDTTLQDYLEQVALVTDLDAYDSSLDRVTLMTLHAAKGLEFPVVFMTGMEDGIFP- 571 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVGMTRA + Sbjct: 572 ---------------------------------AARSNDGGEQLEEERRLCYVGMTRAME 598 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK----DEWIAYEWST 716 +L + V + K ++ +K + Sbjct: 599 KLYLTHARRRRVYGSYQFNPPSRFVGEIPEGLLADVAKKPLHATSKHNLASLFDQLPMQA 658 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 E + P P + + Sbjct: 659 PESETSSAPASTPAADSASVPDQPVIEVEPAAPVDDGTLRI 699 >gi|317495616|ref|ZP_07953983.1| UvrD/REP helicase [Gemella moribillum M424] gi|316914235|gb|EFV35714.1| UvrD/REP helicase [Gemella moribillum M424] Length = 1214 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 167/1034 (16%), Positives = 344/1034 (33%), Gaps = 155/1034 (14%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 + D + D ++ V L+ + T K A ++ + S L Sbjct: 221 LLHDFLLNNEIVIDDFSELVELATKESLNTARKFAIHVKNFLVKKDNGNIVERYLSKSLL 280 Query: 76 QKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL---- 129 +K + S + E+ + + + + N +T + Sbjct: 281 DDNKKEKIRKYFIENDVNISTSILEQGQCLDNIINSLDNELNKNDNIYNTTLLNNIFNDL 340 Query: 130 ------------AKYLNAHYE-----------EAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + Y+ + K++ LDF DL L K + Sbjct: 341 NNYYSMFQTAKKLDTFSTAYQTTLLELNNEFLKRKRELNFLDFSDLNHLAIKALTKIENG 400 Query: 167 AWIR----YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + I +DE QD + +Q ++ + + F VGD Sbjct: 401 KIVLSEAAEYYRNHFLEIYVDEYQDNNNLQEYILNLIKGE----------NTKFFRVGDV 450 Query: 223 KQSIYSFHGAEPKRVLREKRINQK-----------RATNAGQKFSIIELPLSFRSTADIL 271 KQ+IY F G+ P + ++ A + + + L +FRS +IL Sbjct: 451 KQAIYGFRGSNPDLFEEKYNSYKQLDIKNYDANIDYAISDEAEGVCVVLKENFRSDENIL 510 Query: 272 TVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 + VF+ G+S D + + + S + Q V + Q + ++ Sbjct: 511 KSSNYVFNRLMGDKNAGVSYDEQSALYYPSVKEKQ---VNVIPT-------QLINGKINY 560 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389 + + ++ IAY I N + D +LVR Sbjct: 561 FTKEKLVDKKEYRVQSIENIAYEILNGVKNGK----------NYSDYAILVRNSAKMTTY 610 Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449 + + Y I + ++ T L L RF+ + D S + +L S +F++S Sbjct: 611 KQIF----SKYNIPLFFKEKVGFTTSNCFNILYNLFRFLDNTTRDASLIALLHSEIFDYS 666 Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 D++ + ++ +T++E K A K ++ + +++ + + S D I+ Sbjct: 667 NDELLNL--SLNKGKTLFE---KLALSNSVKSKNTVNLLNKWLDFSLNNSLSDILERIVS 721 Query: 510 AKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HS 566 ++ N+ D + F++ E L + L+ Sbjct: 722 DIDFVNYLVTIDINDDEVDYYENFIDLVQEYENTDNK-LSGFVQYLKNIKDDEVFETKKR 780 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------PGIP 619 +N V + T+H +KGLE VF+ D + + ++ + Sbjct: 781 TPNNSVTLSTIHISKGLEYKEVFVADLDTSFNKKGYGGEVLFTENFGFSINIDNFIQKYN 840 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS--NEKKSN 677 I + ++ +K +EE R LYV +TRA L + + NEK ++ Sbjct: 841 ILLQDKDYFESLYKLNSILIKLREREEEVRNLYVALTRAEKILYLVSPNGIELQNEKAAD 900 Query: 678 QRTWYDMVYDSFH-----NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 + + ++ + N L + + Y + E ++ + + Sbjct: 901 KSIYQALLEEDNFEKILNNVLSNYGEFLFENEREANITEYSLTEEKDEQKYVDIDFDLSD 960 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG---------------------KTNLE 771 + K+ + + I + P+ K + Sbjct: 961 FHKKFKVKHQELDNSEKSIEVQNKIFPAKTSYSSLKKINNNYEIHDSKTKETNYLKLSTL 1020 Query: 772 SLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLS 827 + S N+ +G +IHKL + I + + + + SY K L + K +L Sbjct: 1021 NKTSANKAILKGNVIHKLFERIINDIRNNIKIEDVNSYLDGLIKTGNLLTDIKEKRILTE 1080 Query: 828 -----ITRLLENPMMTTAMSCD----------SYSEVSVS--------GKINCPKKDIII 864 I ++N ++ ++ D +EV+ + + + ++I+ Sbjct: 1081 DDYNLIDNDIDNERISNFIANDFMDKIKVAQNCQAEVTFTTMQKASELYNDSMSESEVIL 1140 Query: 865 SGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVC 922 G +D + + N FI +YKT + V ++ E + H QL IY+ ++D Y K++ Sbjct: 1141 QGIVDLLVREDENNAFIVDYKTDNVVGKDAEKILIERHKEQLKIYKDAVEDYYNLKNVKT 1200 Query: 923 LLI-YVSEPKVFII 935 + Y K+ + Sbjct: 1201 YIYSYT-LSKLIEV 1213 >gi|297192605|ref|ZP_06910003.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC 25486] gi|297151430|gb|EFH31159.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC 25486] Length = 811 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 121/719 (16%), Positives = 225/719 (31%), Gaps = 134/719 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 125 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 179 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+S P+K + + K +LK +L + F+ T Sbjct: 180 RLMSLVCRDLDLDPKK-FPPKSFSAKISNLKNEL------IDEETFADQAVDGFEKT--- 229 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 230 ---LAEAYRMYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYQRRFRHVLVDEYQ 283 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L + P L VGD QSIY+F GA + +L+ + Sbjct: 284 DTNHAQYTLVRELVGKGYE----DLEPAELCVVGDADQSIYAFRGATIRNILQFEEDYP- 338 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + I L ++RST IL+ + V E+ + + Sbjct: 339 -------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 373 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + Q + + A+ +A I + Sbjct: 374 ---LW-------TNAGAGAQITGYVADTEHDE-------AQFVADEIDRLTDAGE----- 411 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ V R + + + + + ++D++A R Sbjct: 412 ----AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 463 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK--FANCGISKFQH 483 + + ED++ +L P + I E T + +++ A ++ + Sbjct: 464 VLANPEDNVPLRRILNVPKRGIGDRAEAMIDALALREKITFPQALRRVDEAYGMAARSAN 523 Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 +K + L+ + P +L + + + I+ L E Sbjct: 524 AVKRFNVLMEELRTIVDSGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 583 Query: 536 TLRNEQ-----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 L EQ +L E + + L I + +MT+HTAKGLE PVV Sbjct: 584 ALEFEQARGEEEGTGTLAEFLEQVALVADSDQIPDEDEEGTGVITLMTLHTAKGLEFPVV 643 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FL VF H + EE Sbjct: 644 FLTGMEDGVFPHMRALG----------------------------------QTKELEEER 669 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YVG+TRA ++L + + S S + + + + K+ + Sbjct: 670 RLAYVGITRARERLYLTRSSMRSAWGQPSYNPPSRFLEEIPGQHLTWKRTGPMAAPAGP 728 >gi|224539562|ref|ZP_03680101.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus DSM 14838] gi|224518843|gb|EEF87948.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus DSM 14838] Length = 667 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 99/603 (16%), Positives = 191/603 (31%), Gaps = 122/603 (20%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y + ++ +DF+DL+ T L + + + ++ +IL+D Sbjct: 170 AAKMPAIRDIYHRYWDRCRQADAMDFDDLLFYTFILFRDHPE---VLARYQEQFRYILVD 226 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ L +D + + VGD+ QSIYSF GA+ +L ++ Sbjct: 227 EYQDTNYAQHSIVLQLAKD----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 276 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E S Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + + I+ + ++ Sbjct: 317 ---------------EKEKGEAIGVFQAYSDVEEGDI--------VVNKIAELRRSEH-- 351 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R + IKD +A Sbjct: 352 -------YAYSDFAILYRTNAQSRVFEEAMR----KRGMPYRIYGGLSFYQRKEIKDAIA 400 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI T +++ + + F Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATENNISLWAVLCEPLTYGLNFNK 460 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 SK Q I I + ++ T I+ E + ++E Sbjct: 461 GTHSKLQIFRDLIGGFIEGTVEKNAYEIGTEIIRQSGIINDVCQDNSPENLSRKENIEEL 520 Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N E N SL + +SE+ + + + ++ +MTVH+AKGLE Sbjct: 521 VNGMSDFCALRMEEGNLNISLTDFLSEVSLLTDQD--SDNGDDEKITLMTVHSAKGLEFR 578 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D R+ + S Sbjct: 605 ERRLFYVAITRAEEHCFLSYARTRFRYGKMEFGSPSRFLKDIDIRFLRLPQDAGIGSKID 664 Query: 707 DEW 709 +E Sbjct: 665 EEA 667 >gi|157164973|ref|YP_001467057.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Campylobacter concisus 13826] gi|157101490|gb|EAT97790.2| ATP-dependent DNA helicase PcrA [Campylobacter concisus 13826] Length = 689 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 106/546 (19%), Positives = 187/546 (34%), Gaps = 124/546 (22%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + YE+ K N ++DF+DL+ T +L + + + +I +I++DE QDT+ Sbjct: 172 AAQIYEKYEDYLKANNLVDFDDLLGLTYKILDENED---LAREISNRYKYIMVDEYQDTN 228 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q+++++ L + VGD+ QSIY + GA+ +L K Sbjct: 229 DLQYKLLKKLCLC----------HENICVVGDDDQSIYGWRGAKIDNILNFKDQF----- 273 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + II L ++RS+ IL +++ N G T G+ V Sbjct: 274 ---SEVKIIRLEKNYRSSEAILKAANELIDHNRNRLGKKLVGT---------KGEGEAVN 321 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L + ++ A +IA I ++ Sbjct: 322 LI--------------------------ESFDENLEAGKIAKNIKELLSKG--------- 346 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 +QAKDI +L R + + N +I+ + IKD+++ R I Sbjct: 347 -VQAKDIAILYRINALSRSLEDGL----NKEQIAYKMVGGVKFYERAEIKDIISYLRLIN 401 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-ETVYEY-------IQKFANCGISKF 481 + DD S ++ P + + K+ E +++E + F+ S Sbjct: 402 NPNDDFSIRRIINRPKRGLGKVSLDKLEKMAFEGKISIFEAISNISDNDEAFSKKVKSAL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE 540 + EL S D ++ + S G E +DEF Sbjct: 462 LEFANNLKELQE---SSSVFDLIDKFEAKFGVKKYYESLPDGAERAANIDEFYAVLKDQI 518 Query: 541 QNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + S L+E ++E+ + + IM+VH +KGLE +F++ F Sbjct: 519 KQNPSFDLEEFLNEITLTSEQDGISDE----AISIMSVHASKGLEFEHLFVIGLEEGFFP 574 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 S EE RL YV +TRA Sbjct: 575 -------------------------------------LIGDGSDIEEERRLAYVAITRAK 597 Query: 660 DQLIIC 665 L + Sbjct: 598 KTLSLS 603 >gi|239815308|ref|YP_002944218.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239801885|gb|ACS18952.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 1087 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 144/918 (15%), Positives = 302/918 (32%), Gaps = 88/918 (9%) Query: 25 YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84 + N T K A + T + L + F Sbjct: 250 EQARRRWLDRAAALGREANKTPQKAADAVIDVFGTGEPPRESLAAALAHLRKNFFVATED 309 Query: 85 ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 + +K P +E + + + + + L L A + E K+ + Sbjct: 310 RLNKNLQKYPAAQEA-EAELQTLCAAQAQHAAWLYQQRMTRLTRL---LIAAFAEVKRAH 365 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 +D D+ LL + +S W++ ++D I H+LIDE QDT+ +QW+ +L Sbjct: 366 GWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPLQWQ---ALYGWLS 422 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 +F VGD KQSIY F AEP+ + K+ G ++ + Sbjct: 423 AYTGAGGKAPRVFIVGDPKQSIYRFRRAEPQVFIAA-----KKFVREGLGGELLNCDHTH 477 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 R+ ++ +V++ ++A H + R Q ++L D+ Sbjct: 478 RNARAVVGLVNQAMLAAQDAGEF----DGYRAHTTERNDQGDLLKLPPIDRGALDTTAEA 533 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 + + ++ + + I+VL R+R Sbjct: 534 APADDGMLHWRDSLVTPRVLPEEQLLQ--KECEQAARWVAQRIADGTPPRQIMVLARRRN 591 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + R I V ++ L D ++D++AL ++S DLS LKSP Sbjct: 592 RLSAMQDALR----QRHIPVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLARGLKSP 647 Query: 445 LFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503 LF +D + ++ QR + + + + + ++ + + PHD Sbjct: 648 LFGIGDDALVQLALRQREQPSSSWFALIQKGEGLPAELVAAGARLKQWQRWLAALPPHDA 707 Query: 504 FTLILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 + I +F + + L L +L E +++ L+ L Sbjct: 708 LSAIFHDGDVLARFGAAMPSAMRQSALANLRGLLAASLEIEGARFATPYALVRALRAGG- 766 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 ++ A + V+++TVH AKGLE+ V ++D + + + + + P Sbjct: 767 -VRAPSVAVPDAVQLLTVHGAKGLEADTVLMLDCDAPPPRAQTMGVLVEWKGSDSAPTRF 825 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 +++ K+ + L++ +++ E LYV TRA ++L++ ++N+ Sbjct: 826 VFLASEKTPPGCAATLLEEEQRARHREELNGLYVATTRARERLVLSSVQPA----RANEG 881 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 +W+ + E + + Sbjct: 882 SWWSRLESMCEPVEADEPLLALPVETGGG------------------------------- 910 Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799 + + +L P+ ++ S D + G +H+LL+ LP Sbjct: 911 --------SFSMKKMPVLAPAAKESPATRKAASATVDARAAAFGQAMHRLLEW--ALPGE 960 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859 + L + + + + A + Sbjct: 961 ALPPAHVRAAAREFMLDAQQARGAAV--LAERIRAGAGAWAWDERMIDWHGNEVTLVHEG 1018 Query: 860 KDIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 + + RID++ + +I +YK+ ++ E I Q+ Y ++ +YP Sbjct: 1019 ETL----RIDRLVRERASGAWWILDYKSAARPERDAELIA-----QMQRYRAAVQHAYPG 1069 Query: 918 KSLVCLLIYVSEPKVFII 935 + + + ++ + Sbjct: 1070 ALVRAAFL-TGQGELVTL 1086 >gi|188585469|ref|YP_001917014.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350156|gb|ACB84426.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1161 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 158/1002 (15%), Positives = 324/1002 (32%), Gaps = 122/1002 (12%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 EL ++L L +++ G KA+ E LLS Sbjct: 198 DLELALQELKELIDKAKANLPDKEPPKGYDGLQRATLKAKRYLSYFDMNRDERIVELLSQ 257 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 F P+ + + +L+++ + +E + Sbjct: 258 F-----EKPKITLNRWPEKDIAYELRDEANRLAEEI---IQPIMEEWRRYCHYHIMRFLI 309 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 YE +++ ++F DL++ ++L+ +R ++ IL+DE QDT I Sbjct: 310 PAVEFYEHKREELSYMNFNDLLLRARNMLRDYPE---VRQYFQRKYRTILVDEFQDTDPI 366 Query: 192 QWEVIRSLTEDFF---VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 Q E++ LT + N P +LF VGD KQSIY F A+ K + R Sbjct: 367 QSELLFYLTGEEVQEKTWYNLSPRPGSLFVVGDPKQSIYRFRRADIDTYNLVKDLIVDR- 425 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ--VG 306 I+EL +FRS + ++ VF + + R + Sbjct: 426 -----GGEILELTANFRSVNSLGEWLNPVFQELLPEESDKYQAKHAPLETIKRDEEVIGE 480 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 L + + + + + + + + AR+IA +I ++ + Sbjct: 481 QSDLAGLLSKRLGVRKLSVPQGLSKKEEVMEAD------ARQIAQSIRRLLNSSG----- 529 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 QA D ++++R ++ + I V + D +++L L Sbjct: 530 ---GYQASDFMIILRYKEGMDKYARALE----NEGIPVAMTGGSSMGDCFELQELYKLLL 582 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486 + ++ + + +L+ F +D +++ + + +Y + + N K + Sbjct: 583 CLKEPDNQVYLIAVLRGLFFGLDDDTLYQ-FKENGGSFNIYSSLPETDNKSTQKVAQALD 641 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKG--RQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544 + + + SP ++ L + L + E Sbjct: 642 RLKKYLSWKNKYSPSICLEKLVSELGLFPYTFTCGEMEESRSGYLYQLLEIVKQTEIEGE 701 Query: 545 SSLQELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + ++ ++E P S N V++M +H AKGL++PVVFL + +V Sbjct: 702 TDFVSMVEKIEDVLTINPEEELDIFSQKQNAVQLMNLHKAKGLQAPVVFLANPVKKVNPE 761 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSR------NNIVSDLIKHLKKSTQEEYNRLLYVG 654 K + K + G + R + + K + E NRLLYV Sbjct: 762 KFVTKHIKRTAGTTPTGYFTFSEVRNFRRKEIGIPSDWEKYREEELKYLESEENRLLYVA 821 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 TRA + L+I ++ K W ++ +S ++ N D + + Sbjct: 822 ATRAEELLVIS---DSEESKVRKYNPWCSLLDNSPEEVLELELEVNDNDQQFDGVLLGDN 878 Query: 715 STHH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID---------- 763 E + ++ +Q + +K + + + S Sbjct: 879 QEQVNGEELTEQLQKIREQKYKWIEPHEKPSYLLHTPSSLEKTASESKTSSSDFFQISIE 938 Query: 764 ----------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813 T+ +S + + G I+H+ +++ + IT + Sbjct: 939 SIIQSREDELTEEIDPEKSDRGELKGAVLGNIVHRAFELLIKDCYQDKIT-ITGLLQEYR 997 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSV-------------------- 851 + P + + L+ + + + +S +EV Sbjct: 998 EEDPDGKKEALIQELIYKFKASQLWDKISRSDQVLTEVPFHLKTEPQESLHEFISNNIKD 1057 Query: 852 SGKINCPKKD--------IIISGRIDQISISQQ-----NIFIFEYKTH-------HHVPQ 891 S KI K+ I+ SG ID + I +YKT Sbjct: 1058 SIKIKDSIKENENLDHVSIVFSGTIDLVFKDPDSVRDSEWVIVDYKTDLIEASNEQQKNH 1117 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKV 932 I+ + + QLS Y+++ + +++ + + Sbjct: 1118 AIDQLKNQYSPQLSAYQQVFEKL-TRETVQASAIYIARTGDL 1158 >gi|325694248|gb|EGD36164.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK150] Length = 762 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 96/590 (16%), Positives = 185/590 (31%), Gaps = 119/590 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y++ +++ +DF+DLI+ T L + + Q +I +DE QD Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++++ L F + + VGD QSIY + GA+ + +L ++ Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + ++ L ++RST IL ++V N + + Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + D + A +A TI + Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 KD VL R + + I I+D+++ Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481 I + D++S+ ++ P + KI + ++ + Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFAASQEISLLDASANILLSPVKGKAAQAV 455 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + +L + +L ++ E I+ ++EFL+ T Sbjct: 456 YDFANMLLDLRERLDDFTVTKLVEAVLEKTGYAAALAAQATLESQARIENIEEFLSVTKN 515 Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 +++ S L +L L + +EV +MT+H AKGLE PVVFLV Sbjct: 516 FDESPDNPADESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 VF + Y Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 VG+TRA L + ++ K+N + + + + + Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNQPTRFLREISSDLLDYQGLARPA 651 >gi|301156005|emb|CBW15476.1| DNA-dependent ATPase I and helicase II [Haemophilus parainfluenzae T3T1] Length = 725 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 112/602 (18%), Positives = 206/602 (34%), Gaps = 117/602 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L K+ V I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRAYELFAKKPV---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + I+ L + + VGD+ QSIY + GA+ + + + + Sbjct: 234 YVWIKILAGN----------TGKVMIVGDDDQSIYGWRGAQVENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL +++ S + G + LW Sbjct: 276 -NAETIRLEQNYRSTGNILKSANQLISNNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + A+ +A I N + Sbjct: 313 ------TDGEMGEPVGIYAAFNELDE-------AKFVASQIQNWVDDGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDVLRNLTRERQITLWQAVQVAIQENMLTGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + G + I+ L+E + T + Sbjct: 466 ELINSLQVDTAEMPLFAQTDFVIKHSGLYDMYKQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 N + +L + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 NEAEDMTDLTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGIFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKQ 611 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +L IC + K + + + + +++ T + ++ ST PE Sbjct: 612 KLTICYAESRRVYTKEERHLPSRFITELPSECIQEIRLRGTVTRALNQAKVGSLSTSLPE 671 Query: 721 NT 722 N Sbjct: 672 NE 673 >gi|71906108|ref|YP_283695.1| UvrD/REP helicase [Dechloromonas aromatica RCB] gi|71845729|gb|AAZ45225.1| UvrD/REP helicase [Dechloromonas aromatica RCB] Length = 1134 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 142/967 (14%), Positives = 289/967 (29%), Gaps = 108/967 (11%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER----FSL 68 LI +DL + + + + S + Sbjct: 224 AALIERDLAAVGGLLDGRMQSLLMPLARFAAANAPGLLDAIADWSSPLTAAIADLPTWQA 283 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-- 126 L+ LT T +K++ + +L ++ K + +R + Sbjct: 284 LAGLLLTGTGTLRKSVDKRIGFPADKELADQKKAMLELLGDLRSVDGLEAALAMLVKLPQ 343 Query: 127 --------------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 L + A ++ +DF ++ L D + Sbjct: 344 PELSEAEWATVECFSRLLRLAAGQLWLAFQEAGEVDFIEIAARAGLALGDDDAPTDLAQA 403 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 +D I H+L+DE QDTS Q +I LT + RTLF VGD QSIY F A Sbjct: 404 LDYRIRHLLVDEFQDTSPSQVGLIEKLTRGWM-----PDDGRTLFVVGDPMQSIYRFRKA 458 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + LR + + + L + RS I+ V+ F A+ E Sbjct: 459 DVGLFLRVRER-----GIGDIRLGHLRLFRNNRSYPGIVDWVNAAFPSIFPAEDSPEAGA 513 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 S +A ARR+ Sbjct: 514 ------------------VRYAESAATRSPRADSGVVVHPVIEHEGGDAAGEEARRVLTI 555 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I +R A+ I VLVR R + R + + D L Sbjct: 556 IRE-----------ARRAAPAERIAVLVRARSHLDALVSEIRRSAPELR--FQAVDIEGL 602 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467 ++DL+ L R + + D + ++ +L++P D+ + ++ Sbjct: 603 DGRQHVQDLLTLFRALHHRADRVHWLALLRAPWCGLKLADLHALAADDKKSTIWQLMQDE 662 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527 + + ++ G + +HV+ +H+ P + + G + + E ++ Sbjct: 663 ARLARLSDDGQQRLRHVLGVLHQAFAGRDRQHPRRWLEGVWLMLGGPRCLEA---PEALN 719 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 ++ F + + S L + + + V++MTVH +KGLE Sbjct: 720 DVEAFFALVDKLVASRTLS----AETLAAHAAELYAPSDPLGDAVQMMTVHKSKGLEFDT 775 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK-----SRNNIVSDLIKHLKKS 642 V L + + + + D + P + L K + Sbjct: 776 VILPGLHRETGGNDSSLLLWDEVAGADGDEHLLVAPIKQKGAGNGEPTAYDYLKKLEAER 835 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RLLYV TRA +L + + +K+ ++ + ++ L Sbjct: 836 AAHEDERLLYVAATRAIRRLHLLGIAVADAKKEEGLKSPANGTLLKLLWPGVAQREFLAA 895 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 + S P + + P + P N ++ + ++ Sbjct: 896 LTEGESGEPARASIDPATFVPPLVRLREVHVPPALRSPAEGVRPADNPVDLDTPESTLSL 955 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--------FITSYCTKNAK 814 + + G ++H+ L++I + + Sbjct: 956 E----------------ASVGTLVHRCLELIAKNGLPAWSDKRISGLQPVYQRWLQAQGH 999 Query: 815 LWPAKE--YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872 E ++ ++ L + ++ S + + + ++ ID++ Sbjct: 1000 SEADAESGAGEVVAALVSTLASDTGRWLLTDHPQS--AAEQAWSSTDGSLTVNHVIDRVF 1057 Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932 ++ +I +YKT E+ ++ QL Y + L + + + ++ Sbjct: 1058 VADACRWIIDYKTVRLPDAELPQRAESYRPQLERYASLFAG--DPLPLRLAIYFPLQGRL 1115 Query: 933 FIIPQNK 939 +P Sbjct: 1116 IELPAAM 1122 >gi|327399219|ref|YP_004340088.1| UvrD/REP helicase [Hippea maritima DSM 10411] gi|327181848|gb|AEA34029.1| UvrD/REP helicase [Hippea maritima DSM 10411] Length = 667 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 113/680 (16%), Positives = 218/680 (32%), Gaps = 125/680 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L +K + L + ++ L + + Sbjct: 31 GAGSGKTKTLTHKIAFILNEGLAKPYQILALTFTNKAAGEMKERIGKLIGSQASDMWIGT 90 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKIRDRFNT 116 F ++ L ++ +++ ++ +KL + ++ + Sbjct: 91 FHSIALKILRKEGFRPTIYDSKDQENLIKEILKKLNIDSKKYTPRAFCSSISSLKLKLTK 150 Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + K K + YEE+ K +DF+++I+ +LL++ + +R K + Sbjct: 151 PEDLKVNSPFEKYLKSVYRLYEESLAKANAVDFDNIILRVIELLEENED---VRKKYSNK 207 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +I IDE QDT+ Q+ +R L +S + AVGDE QSIY F GA+ Sbjct: 208 FKYIFIDEYQDTNYPQYLFVRLLY----------NSSNIVCAVGDEDQSIYGFRGAQIDN 257 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +L+ R + II+L ++RS +IL + + + S + S Sbjct: 258 ILKFDREYEN--------CKIIKLEKNYRSAQEILNIANTLISKNNLRKEKRLYSDKI-- 307 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 G + + + A+ +A I + Sbjct: 308 --------GGRISIVNLATETEE--------------------------AKFVAEQIQKL 333 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 DI VL R + I Y I + Sbjct: 334 KLEGENLY----------DIAVLYRTNFQSRTIEEAL----IRYSIPYNIIGSKRFLERK 379 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN 475 IKD++A + +++ DD++F+ + S + I + +++E + Sbjct: 380 EIKDVIAYLKLLVNPNDDIAFLRAIGSHPRGIGAKFLEVISKAKDSLNTSMFEASKWLIE 439 Query: 476 CGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533 + + +K + I S I+ + + I + E Sbjct: 440 KKKVTPRQEKALKQFLSVFDINTAKSVDKIIDEIIQISGLKNHLEQTDDFDRIANIMELK 499 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 N + ++L+ + +L VR+MT+H +KGLE VF+V Sbjct: 500 N------TGNLNNLESFLEDLSLLD--YSNELEEQKESVRLMTIHASKGLEFNTVFIVGV 551 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F ++++K + EE RL YV Sbjct: 552 EEGLFPNENLK----------------------------------RDELDIEEERRLFYV 577 Query: 654 GMTRASDQLIICKHSNTSNE 673 +TRA L I S+ Sbjct: 578 AITRAKTNLFISHASSRRRG 597 >gi|323342307|ref|ZP_08082539.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463419|gb|EFY08613.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1040 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 152/922 (16%), Positives = 309/922 (33%), Gaps = 130/922 (14%) Query: 30 DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT--- 86 D+ +++S E+ +P K + +Q+S + E L S Q + I T Sbjct: 228 DVQGIIAISDESYDPNDKKGKKYFEQSSMLLQVTEGLRTLESLIHQQDISFYDQIPTVCN 287 Query: 87 -QEINK--------KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-TLAKYLNAH 136 + I + +++ + + + ++ + + F T++ L + + Sbjct: 288 FKVIADTKNDVYTEQRKRIEKTVNRIFENYMPLDEHFRLLNNQIETVSLLIKMTQDYIEA 347 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 + K++ LDF D +L + D I + + I++DE QDT+ Q E+I Sbjct: 348 FSSLKEEENCLDFNDFESMALRILNEND--GEISELVKHKYKEIMVDEFQDTNEYQDEII 405 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 + S+ +F VGD KQSIY F GA+P + Sbjct: 406 TKI-----------STGNNIFRVGDIKQSIYRFRGAKPNIMQNLMLD---------DTTQ 445 Query: 257 IIELPLSFRSTADILTVVDKVFSIPEN-AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 + L ++RS DI+ + VF N G++ D + + Sbjct: 446 NLYLSFNYRSKKDIVEYNNYVFDKLMNLTFGITYDEHDHVN----------------VGI 489 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 +P + D+ +++S + A+ IA I N + KD Sbjct: 490 PAQSEDTHPVEIHIIEKHDNRFKKTSDQLRAQHIAQEIINYHSQG----------YRFKD 539 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 +++LVR + +Y I +D+ I ++AL + + D Sbjct: 540 MVILVRSHASKGY----LKEAFEEYNIPHYIDDQSGFYKSEIIASVVALLNYATTFHDFY 595 Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495 +L SP +N+S+D I + + + +Q + + Sbjct: 596 LVP-VLTSPFYNYSDDQIAALKLMDASSIR-----KALEIENPELYQSLDDMVLSWRSK- 648 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 D ++I + + + + LD L ++ + S +LQ + + Sbjct: 649 ------DLISIIQEIIQLNDVYNNTLSLQDKTNLDFLLEKAIQYQAVSVPTLQGFVRFVA 702 Query: 556 QYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 ++ S + + V MT+H +KGL+ P+VFL G H + + Sbjct: 703 EFKDDTSSEASPLNKDADIVTAMTIHQSKGLQFPIVFLWGMGRHAV-RDHSDILLNDDTF 761 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 + SRN I + + EE RLLYV +TR LI+ Sbjct: 762 GIGLNHVELPMRFVSRNLIRTVMEIKQDNEEIEENLRLLYVALTRPQKHLILV------- 814 Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 D+V + + ++ A +T +E E + Sbjct: 815 ----------DVVKEYQPTSLDYQLLRNHKRKVDLLLAASPHNTVIRVIDGMELTENSLK 864 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792 +++++I + +++ + +L S G +H+ ++ Sbjct: 865 PIEQEEISTIFTEKLPLTLDQEVPI------LTKNRDLNFDKSFEFATGFGSTLHEAVEK 918 Query: 793 IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852 + +LW + +N R L+ + + + Y + Sbjct: 919 LPH------------------RLWTEADLENFESKFKRRLQ-AYNQHSFTQELYRYPHIQ 959 Query: 853 GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912 ++ G ID ++ + + ++K+ + +E I + Q+ Y+K L Sbjct: 960 QEVPYLIDGDA--GVIDFYVYNETELILVDFKSDNAP---LEIIVERYEDQIKAYKKALG 1014 Query: 913 DSYPNKSLVCLLIYVSEPKVFI 934 YP + + Sbjct: 1015 IIYPELLIKTYIYSFHLNHYIP 1036 >gi|253574626|ref|ZP_04851966.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str. D14] gi|251845672|gb|EES73680.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str. D14] Length = 1341 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 143/932 (15%), Positives = 278/932 (29%), Gaps = 116/932 (12%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQAS 57 L + + + D +S + + +L++ G P L ++LQ+A Sbjct: 217 ALEKSAWVQSLLADTKLALGGAISLLTQAKALALSPGGPEPYAVTLEDDLNVVRSLQEAV 276 Query: 58 QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI-------KI 110 + + +K+ E+ ++ L+E+ KK+ + Sbjct: 277 AGGAWASLYDAFQGVNFGKLKPVKKDQTDPEVQERVKALREEAKKTVTDLRTQLYGRPPE 336 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----- 165 + M A L Y K LDF DL +L+ D Sbjct: 337 AFLREMHDMAPLLGALSELVSEFGERYRLQKVSKGWLDFSDLEHYCLQILRHPDSEPGEL 396 Query: 166 -SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + + ++ + +L+DE QDT+ +Q ++R ++ + +P F VGD KQ Sbjct: 397 RPSDAALEYRRQFDEVLLDEYQDTNTVQETIVRLISRE---------NPGNRFMVGDVKQ 447 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PE 282 SIY F AEP L + RI AG I+L +FRS +++ V+ +F E Sbjct: 448 SIYRFRLAEPGLFLEKYRIYGDNFDGAGL---RIDLARNFRSRREVVDAVNLLFRQIMNE 504 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE--- 339 + +S D+ + + + E ++ D+ + +S + Sbjct: 505 SVAEISYDTRAELVYGEGFPPEGAEDYRPELLLIDRDNGSSGGSDSSERGDNEWTDGDGG 564 Query: 340 ---------SSASILARRIAYTISNMIGTD------TIFSNGKKRVIQAKDILVLVRKRK 384 + + AR IA I M+G R + +D+++L+R Sbjct: 565 DEEDEAALIEAVRLEARAIAARIRGMLGEGGEPLRIYDKQLQAMRPVAFRDMVILLRS-- 622 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 T I G ++ +++L + I + D+ +L+SP Sbjct: 623 -TLTWAPAMIEELRVEGIPAYGELSQGYFQASEVETMLSLLQVIDNPLQDIPLAAVLRSP 681 Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------------------- 479 L++FSE+++ I + + A Sbjct: 682 LYDFSEEELADIRLASPSGRYYEAVLARAAAGNAESALSDSRGGDAGEASVYHPETGQIE 741 Query: 480 ---------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529 K Q ++ + +A+ D I + G + L Sbjct: 742 PSANDALALKLQAFLRQLEAWRSMARVGQLGDLIREIYRETGYLEWVGGLPGGTQRQSNL 801 Query: 530 DEFLNFTLRNE-QNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGL 583 L+ + E +S L + + + + VRIMT+H +KGL Sbjct: 802 QALLDRARQYEVSSSAPGLFRFLRYVTRLRENGGDLGAPGDAGEQGDGVRIMTIHKSKGL 861 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVF+ Q + L P + + + + Sbjct: 862 EFPVVFVAGLSKQFNRQDLNAPFLMHKELGFGPKYVDANTRVSYPTLPNLAIRRRAQMEL 921 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNE-----KKSNQRTWYDMVYDSFHNDERVKKI 698 E R+LYV +TR D+L++ + + + + + Sbjct: 922 LAEEMRVLYVALTRPKDKLVLVSSVKNLTKSVEAWGGALEASEQQLPDYLLARGRCYLDW 981 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 I PE P ++ + + Sbjct: 982 IGPALIRHPSARELRQFAGLPEVGPAVLADSPSDWHIAFLSARSAGQNGGAETEAAATAE 1041 Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818 + +DT L S + L + + + + S + A Sbjct: 1042 ATAVDTAQIKALLSGQP--------TAV--LAEDADGTEAAEMRAMVESRLSWTYPYAAA 1091 Query: 819 KEYKNLLL----SITRLLENPMMTTAMSCDSY 846 +L+ + + Sbjct: 1092 SRIAAKTSVTEMKALLMLQEEPVRDVFAEAEL 1123 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 67/201 (33%), Gaps = 34/201 (16%) Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR---KNFITSYCTKNAKLWPAKEYKN 823 + RG+ H L+Q + E + + + K+ A++ Sbjct: 1143 RRPRFMEQRKLTPTERGVAYHTLMQHLPFDAEPGIAVVQATLARLIER--KIMTAEQAAA 1200 Query: 824 L-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC------------------------ 857 + + SI RLL++P+ D E+ S + Sbjct: 1201 IEVDSIARLLQSPLGELLRQADWVKREMPFSYGLPAAEASPQLGGLEAMQDGTAGDAIRE 1260 Query: 858 -PKKDIIISGRIDQISISQQNIFIFEYKTHHHVP--QEIEHIPYTHIAQLSIYEKILKDS 914 + ++I G +D + + +++ +YK+ + + ++ QL +Y K +++ Sbjct: 1261 LDGETVLIQGIVDCLFAAGGKVYLLDYKSDRVLEHRGGAAALAESYRFQLELYAKAVEEI 1320 Query: 915 YPNKSLVCLLIYVSEPKVFII 935 + L + + + Sbjct: 1321 TGSTVDEKWLYFFDGGQAVRL 1341 >gi|219668857|ref|YP_002459292.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2] gi|251764522|sp|B8FXD7|ADDA_DESHD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219539117|gb|ACL20856.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2] Length = 1392 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 140/848 (16%), Positives = 274/848 (32%), Gaps = 105/848 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 P+ S + ++ E G + ++ A A+ L + ++ + Sbjct: 250 YLPVLEDDQSRL-GFLREMAEKGTWSDIETAFK-SAAAFPGLPRGSKKNLPDSLIDEENS 307 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 + +++ ++ E++K + KM + + ++ Y++ Sbjct: 308 KRLREESKKARDEAKKKLEEIKNTVFSVPLTDQLPFLNKMGELVGTLAQVTQHFAREYQK 367 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 AK++ +DF DL LL K I K+ +L+DE QD + +Q +++ + Sbjct: 368 AKRQRNCVDFSDLEHYALQLLAKDKQPTEIALKLQAYYAEVLVDEYQDINPVQERILQLV 427 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS-II 258 + LF VGD KQSIY F A+P LR+ G + +I Sbjct: 428 SR-------QEEGKANLFMVGDVKQSIYRFRMADPGLFLRKYGEFPHYQEGGGAAPNLVI 480 Query: 259 ELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQV------GTVQL 310 +L +FRS +++ ++ +F E A + D +R + + G +++ Sbjct: 481 DLNQNFRSRPEVIQGINYLFYQIMTEGAGEIVYDEQAALRPGAKFVSDGELRTAEGPIEV 540 Query: 311 WEQVVSQHDSQCNPQQESWTSYFD-------------------------SLPQESSASIL 345 D ++ + + + SL + +A I Sbjct: 541 HLFDPKAIDLSLGQKRGAEDAATEVDSPAKGEGEEFEQNREPESGDDESSLEEAETARIE 600 Query: 346 ARRIAYTISNMIGTD----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR +A I M+ G R +Q DI++L+R + + Sbjct: 601 ARLVAARIQKMVLEREFQIHDKELGDYRPVQYADIVILMRS---LASVASVYAEEFQKAG 657 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---- 457 I V + +++L + I + D+ F +L+SPL + ++ K+ Sbjct: 658 IPVYAETNSGYFGTNEVDTVLSLLKIIDNPRLDIPFAAVLRSPLVGMNGTELGKLRSLLP 717 Query: 458 -----------------TQRHETETVYEYIQKFANCGISKFQ------------------ 482 ++ E Y I++ Sbjct: 718 QGDFYETLVLTFWAGDAHRQEEGHEFYSEIREILGKHWESLPQLEVKVRHILETSPEIKE 777 Query: 483 ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLR 538 + E H ++ S D + G + L + R Sbjct: 778 KVDAFFPKLQEWRHRSRRTSLADLLWHLYEDTGYLAYVGTLPAGAQRQANLRVLYDRACR 837 Query: 539 NEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 E +Y L + LE+ N VR +TVH++KGLE PVVF+ Sbjct: 838 YEATNYRGLFRFLRFLEKFQSQGKDLGNASIVGEKENVVRFITVHSSKGLEFPVVFIAGL 897 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 G + + ++ + L + Q + + I + + L + E R+LYV Sbjct: 898 GKKFNTRSLSSQLLLHSHLGVGIPLIDIENQVRYPSVIQYAVKERLWQEALAEELRILYV 957 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 +TR ++L + H + E + R+ D +L + +W+ Sbjct: 958 ALTRGKERLFLFGHQHKLAEAINKWRSLALSC-----PDTAFPDGQLRGAKTYLDWLGPA 1012 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 H + L T +L D K + S + + Sbjct: 1013 LVRHPEDLFKLGSFPTASELPDSSSQWKVILHDQIAGKGPVQEATSSQDEI--ILPDQET 1070 Query: 774 LSDNQTFN 781 L + + Sbjct: 1071 LGEREASE 1078 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 98/303 (32%), Gaps = 22/303 (7%) Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + E K+++ T + T ++ ++ + W +PE Sbjct: 1089 SGKTEIPGETKNSEETKTSEDKKNLEAQTPETADLDTKNLQEEVFRQLNWQYPYPEGVNQ 1148 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784 + ++ +L Q + + + + + + + RG Sbjct: 1149 SAKTSVSELK-RQSLWYMDNEYSSPSSSSSSSPSALSAPSFLRPQFIVSRKELTPAERGT 1207 Query: 785 IIHKLLQVIF-----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-------SITRLL 832 +H +Q + E + S ++ +E + + LL Sbjct: 1208 AVHAAIQHLPLALWRDTWEELAQEVRESMLQEHIDSLIRREILSAEQGGAVSVSQLKNLL 1267 Query: 833 ENPMMTTAM-SCDSYSEVSV--SGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKTH- 886 ++ + + EV S ++ K+ +++ G ID + +S + + ++KT Sbjct: 1268 DSTSGKRLWEAEEVRREVPFTLSLRLRAQKEPVLVQGIIDAVLLSHQEHEAQVMDFKTDN 1327 Query: 887 -HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIPQNKLNKAF 944 VP + + QL +Y ++ + +IY S + F++ + + A Sbjct: 1328 LAGVPDPELVLTQRYGLQLGLYALAVERLLKV-PVRECIIYATSLNREFVMQREAVQAAL 1386 Query: 945 AEI 947 + Sbjct: 1387 ESV 1389 >gi|313894359|ref|ZP_07827924.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158 str. F0412] gi|313441183|gb|EFR59610.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158 str. F0412] Length = 1304 Score = 286 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 115/733 (15%), Positives = 231/733 (31%), Gaps = 53/733 (7%) Query: 28 VSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSLLSSF------FLTQK--- 77 + + + +++ G A + + + F+ + Sbjct: 237 RERLERMEQILLDSVGPHKWQNIYDNQLAALGMLSSAQTWDDMGEACKHTDTFIKDQFRM 296 Query: 78 FTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRD---RFNTYKMFKSTLASLTLA 130 + + + + L K+ LK Q + + + + + L Sbjct: 297 GSKEAQAFDPILVAEFKSLGSQNKDDLKAMQGAVFTVSEATLQDQFKAQYPIIEGLVELT 356 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEV 185 + Y + K++ ++DF DL LL + + + ++ I++DE Sbjct: 357 IAFHKAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSDVAKELQDTFKEIMVDEY 416 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q +I + S F VGD KQ+IYSF A+ + + Sbjct: 417 QDTNGVQETIINLI-----------SRVDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG 465 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I+L +FRS +IL + +F + + T RI + Sbjct: 466 ----DTDAVERRIDLAKNFRSHENILAATNFLFYQIMTEEAAELNYTEAESLIPGRIVED 521 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILARRIAYTISNMIGTDTIF 363 + W + + S D + I I + Sbjct: 522 AP-EDWVGGDVELQILDVSKDTLGASESDEDEGDDPENNERELDFIIQKIKEIHAAKKQV 580 Query: 364 --SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +G R I+ +D +L R I V N+R + I+ L Sbjct: 581 QNPDGTFRQIEWRDFAILRRSLAGWGTRAV---EAMRQAGIPAVVNERDGYFEAQEIQLL 637 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481 +AL I + E DL +L S L +++ + E + Sbjct: 638 LALLSIIDNPEQDLPMAAVLHSGLVGLDANELGALRLS-GEGSLWSLMPAYAEESQDERL 696 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540 I ++ +++ D I ++ G + + E Sbjct: 697 LAFIGHMERWRTLSRRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDRAKGYE 756 Query: 541 QNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + + L + +E + + S N VR+MT+H +KGLE PVVFL Sbjct: 757 ASGFRGLFRFLRFVESLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFLSGVQK 816 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + ++ I + + + + + + E R+LYV + Sbjct: 817 RFNMMDLRSELLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRILYVAL 876 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYD-SFHNDERVKKIKLTNSINKDEWIAYEW 714 TRA D+L + + +++ + + +++ +T + EW+ + Sbjct: 877 TRARDKLFLTGFVKGFKNSGGKLSSLGELINNVATVEGQQLPTDIITQANTYLEWLIMSF 936 Query: 715 STHHPENTPLERE 727 + H PL Sbjct: 937 TRHLDGGNPLRVA 949 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 13/171 (7%) Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 L+S G ++H+ +Q + + + +E L Sbjct: 1126 KPQALQSEEDVLTGAQWGTLMHEAMQWLPLAKYTQASLTKELDALVTKGTFTEEERNLLS 1185 Query: 826 L-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQ 875 S+ + + + + + E+ S +D+ + G ID Sbjct: 1186 DTSLYKFFSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGEDLFLQGIIDTAFEED 1245 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + +YKT E + + Q+ +Y++ L+ + IY Sbjct: 1246 GGWVLVDYKTDRVKSG--EDLIKRYKIQMDLYKEALQRL-TGMPVKVCYIY 1293 >gi|300779590|ref|ZP_07089446.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium ATCC 33030] gi|300533700|gb|EFK54759.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium ATCC 33030] Length = 1100 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 128/965 (13%), Positives = 258/965 (26%), Gaps = 167/965 (17%) Query: 84 IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143 + + +++ + + + + L ++ Sbjct: 193 MPPSRVREEAEAFIDNVAAL-PRGRAKEQYAKEVRGWIDKQRLRAAYTDLAEELSRELRE 251 Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 V+ F + + L + +++DE QDTS Q ++RSL + Sbjct: 252 RGVVTFNEQMSVAAQLASNHPS---VGESQRGRFRVVMLDEYQDTSHAQRVLLRSLFGEN 308 Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263 H P T+ AVGD Q+IY + GA + G +L S Sbjct: 309 RDDLARHPHPLTVTAVGDPMQAIYGWRGATAANLQAFVDDFP---LADGASAPKAQLTTS 365 Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323 +R+ ++L + + V S A G + G V++ Sbjct: 366 WRNPPEVLALANSVSSAVLGAPG---PQRAVEPLNPNPASDPGNVEV------------- 409 Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383 + D + + A + + S VLVRK Sbjct: 410 ----GFYGPVDEEIAAVADMLAADFH----EQLAEHGDVSS------------AVLVRKN 449 Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443 K + LI I L + D +A+ + ++ +D + + +L Sbjct: 450 KQSALIAEALEE----RGIPYEIVGLAGLLTVPEVADAVAVAKMLVHPQDSAAALRILAG 505 Query: 444 PLFNFSEDDIFKICTQ-------------------------------------------- 459 P DI + + Sbjct: 506 PACGLGLKDITALSRRAVNLAGGRAHDQDDSAVAGLGPDADPRERLQAQLTDLIREAENA 565 Query: 460 ---RHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 + + + + ++ Q + + L + D F I+ Sbjct: 566 VGENERSVGLADAVADLGEPERYTEEGLARLQVLSSQLRALRMRSLGKRLPDLFDDIVSI 625 Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA--- 567 R + +SR + LD+F + L+ ++ LE Sbjct: 626 FGIRTEVLSRPSDTGTVHLDKFAETVASY---PGADLEGFLNYLELATEHEDGLAPGTVA 682 Query: 568 -NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 + V+I+T H AKGLE V + + + + + ++ DD + ++ Sbjct: 683 NTGDRVQILTAHKAKGLEWRTVAVAHADAATYGGTAETFLGYVATVPDDSYTALAEADTR 742 Query: 627 SRNNIVSDLIKHLKKSTQEEY-NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 S +++ K K + E RL YV +TRA +L++ + KK + + + Sbjct: 743 SDFQKLTNQYKKDKTAELAEESARLFYVAVTRAERRLLVTASGISPTRKKPVEPYSHFLP 802 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE-------TIKQLMDEQK 738 + +T+ + W + E ++ E + QL + Sbjct: 803 FRDMAEVLSWWDGTVTDELTDIREREGFWPHYSAEPAAVDAAERVNAALKDLPQLTAGEL 862 Query: 739 IPKKLFSPIKNDINEPYILNPST--------------------IDTKGKTNLESLLSDNQ 778 ++PS + N Sbjct: 863 YGLWERDVTALIEEHEATMSPSVPVIMPAMLTASDIVALRANPEQFARRARRPVPFKPNS 922 Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838 RG H+ ++ F L E + Sbjct: 923 YAKRGTAFHEWIEGFFGARP----------------LLDDDELPGNTEPDVDATTLARLK 966 Query: 839 TAMSCDS---YSEVSVSGKINCPKKDIIISGRIDQISISQ-------QNIFIFEYKTHHH 888 + + + + GRID + + I ++KT Sbjct: 967 ASFEASHWAQRAPAHIEHPFEIDLGSASVRGRIDAVYRDAPTPEAPHGSWTIVDWKTGAK 1026 Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPN-KSLVCLLIYVSEPKVFIIPQNKLNK-AFAE 946 QL++Y + K + + + YV + F P + + E Sbjct: 1027 PQATEMRAA---KLQLAVYREAWKRIAGDGLPVNAVFFYVRTGEDFA-PHDLPERGELEE 1082 Query: 947 ISTKI 951 + Sbjct: 1083 LLQTA 1087 >gi|222086413|ref|YP_002544947.1| DNA helicase II protein [Agrobacterium radiobacter K84] gi|221723861|gb|ACM27017.1| DNA helicase II protein [Agrobacterium radiobacter K84] Length = 828 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 102/551 (18%), Positives = 179/551 (32%), Gaps = 109/551 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ K DF DL+++ ++ ++ + Q +IL+DE QDT+ Sbjct: 220 RELYFAYQARLKTLNACDFGDLLLHPINMFRQNPD---VLKDYHQRFRYILVDEYQDTNT 276 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + + VGD+ QSIY + GAE + +LR ++ Sbjct: 277 AQYMWLRLLAQRP------KGELQNVCCVGDDDQSIYGWRGAEVENILRFEKDFP----- 325 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + E G + + T Sbjct: 326 ---GAKVIKLERNYRSTEHILGAAAHLITHNEGRLGKTLFTDRT---------------- 366 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +DS + AR I I + N Sbjct: 367 ----------DPDDIKVQVHASWDSEEE-------ARAIGEEIEQLQRG-----NSSGVK 404 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + D+ +LVR L ++ + L I+D MA R + Sbjct: 405 HRLNDMAILVRASFQMREFEDRFVTL----GLNYRVVGGPRFYERLEIRDAMAYFRLVCQ 460 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + + + R + + Sbjct: 461 PADDLAFERIVNTPKRGLGDTTVRALHDYARVRNIPMLAASADIIETDEMKPKPRKALFD 520 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 V++ + + + IL + + E ++ L E + E Sbjct: 521 VVQSFRRWQGLLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSMDSFE 580 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + LE + + N + V IMT+H+AKGLE VFL +F H Sbjct: 581 S--------MRGFLEHVSLVMDVEQNENLDAVSIMTLHSAKGLEFETVFLPGWEEGLFPH 632 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + ++ EE RL YVG+TRA Sbjct: 633 QRSLD--------------------------------ESGRAGLEEERRLAYVGLTRAKR 660 Query: 661 QLIICKHSNTS 671 + I SN Sbjct: 661 RCHIWFVSNRR 671 >gi|218281364|ref|ZP_03487842.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989] gi|218217456|gb|EEC90994.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989] Length = 725 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 101/587 (17%), Positives = 188/587 (32%), Gaps = 120/587 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + A YE + + +DF+DL++ + LL + ++ K +++I +DE QD Sbjct: 170 LAKIYAGYEARRNEMKAMDFDDLLLEGHRLLNS---VSSVKEKWQNRLDYIHVDEFQDVD 226 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 IQ+ +I+ LT L VGD Q+IY++ GA +L+ + + Sbjct: 227 PIQYGIIKLLTG----------KNTHLCVVGDPDQTIYTWRGASVDIILKFNKDFE---- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + L ++RST IL + V + Sbjct: 273 ----PCKTVILNENYRSTQPILDASNAVIKYNKERIDK---------------------D 307 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L+ ++ +E +A I+ K+ Sbjct: 308 LYTKLPGDEKITMFEGKEDSEEPI--------------FVARQINE----------KHKK 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 ++ KD+ +L R + + + + I V + IKD + R Sbjct: 344 GLEYKDMAILYRSNYSSRAFERIFKSV----GIPYVIYGGIRFYERQEIKDALCYLRLCT 399 Query: 430 SQED--------DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK---FANCG 477 ++ + DL+ + ++ P I + +Y+ ++ + Sbjct: 400 NRNEEDPDQMALDLAVLRVINVPRRGIGARTIENLQKQAAERHMNLYDVMKDPIGLSTAV 459 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFL-N 534 K + + I +L + + DF +L G + ID L E + Sbjct: 460 TKKCEMFVDLIEDLRENREHYALEDFLDYVLDTTGYISMLKEDRESGQDRIDNLKELKED 519 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 ++ +L+ + ++ + + N V +MTVH AKGLE VFLV+ Sbjct: 520 IAQSMIEDPEMTLESYLQDIALFTDKT---QETSENTVSLMTVHAAKGLEFDTVFLVNFN 576 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 VF EE RLLYV Sbjct: 577 DGVFPSSR--------------------------------ACDEGGMKALEEERRLLYVA 604 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 MTRA L I ++ S + + + + +K + Sbjct: 605 MTRAKKTLYITWNTGFSYMQDAFKTPSRFRAEIPMEYIVQEEKEEAP 651 >gi|309801365|ref|ZP_07695494.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium JCVIHMP022] gi|308222254|gb|EFO78537.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium JCVIHMP022] Length = 794 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 113/728 (15%), Positives = 217/728 (29%), Gaps = 124/728 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P S + + ++ T E Sbjct: 74 AAAEMRERLAALVGPEAERMWISTFHSACVRILRRDG--DQIGLKSGFSIYDTADSERLI 131 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK---MFKST 123 L+ + K + I K D K L +D+ + + Sbjct: 132 KLIGADLNID----LKRYTPRMILGKISDYKNSLISWKDQLKTYAADYRPGQRGYQLGRF 187 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + + Y+ + +DF+DLI+ T +L + ++ + +I +D Sbjct: 188 DNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELFRTCPQASDY---YRHKFRYIFVD 244 Query: 184 EVQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 E QDT+ Q+ ++R L+ D P + VGD QSIY+F GA+ + Sbjct: 245 EYQDTNHAQYVLVRELSGIDSGEQADPHATGAGRVGPSWVTVVGDSDQSIYAFRGADIRN 304 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 + + I L ++RST IL + V + EN + Sbjct: 305 IQDFEEDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK-------- 348 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + A A IA I+ + Sbjct: 349 -------------LWTAL-------GKGDPIIGYAADN-------AQQEAGYIASEITRL 381 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + I D+ ++ R + + + + + Sbjct: 382 HTEE---------GIAYSDMAIMYRANAQSRSLEETM----INANLPYQLVGGTKFYERR 428 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 +KD +A + I++ DD++ +L P + T + + + Sbjct: 429 EVKDAIAYLQAIVNPADDVNMRRILNVPKRGLGARAEGLVAMYADRHGTTFFDGIEHLDQ 488 Query: 477 GISKFQHVIKYIHELIHIAQFC---------SPHDFFTLILGAKKGRQQFISRFGNE--- 524 K + + P + +L ++ + Sbjct: 489 IEGMTGRTAKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDAS 548 Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582 +D L + + EQN+ +L + + + + +V +MT+HTAKG Sbjct: 549 RVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKG 608 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H S Sbjct: 609 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDTS 634 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YVG+TRA +L + + + + ++N+ + + + K+ + Sbjct: 635 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLIDWKRKEAGM 694 Query: 703 SINKDEWI 710 + W Sbjct: 695 ERMRGGWQ 702 >gi|91787605|ref|YP_548557.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666] gi|91696830|gb|ABE43659.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666] Length = 825 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 101/682 (14%), Positives = 203/682 (29%), Gaps = 151/682 (22%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + A YEE ++ V+DF +L++ + +LL+ +R + HILIDE QDT+ + Sbjct: 184 EIYALYEEQCQREGVVDFGELMLRSYELLRDNTA---VREHYQRRFRHILIDEFQDTNKL 240 Query: 192 QWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ I+ L + ++ AVGD+ QSIY+F GA + R + Sbjct: 241 QYAWIKMLAGQGPEATQGAAVMPGGSVVAVGDDDQSIYAFRGARVGNMTDFVREFDVQ-- 298 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 I+L ++RS +IL +++ S G + + G+ V Sbjct: 299 ------HQIKLERNYRSFGNILDSANELISHNSKRLGKNLRTEAG-------PGEPVRV- 344 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + +S A+ + ++ Sbjct: 345 ---------------------------YEATSDFAEAQWFVDEVKQLVRDG--------- 368 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + K+I +L R + ++ + + + IK +A R + Sbjct: 369 -AERKEIALLYRSNAQSRVMETAL----FNAGVPYRVYGGLRFFERAEIKHALAYLRLLE 423 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYI 488 + DD SF+ ++ P I ++ R ++++ + + + I Sbjct: 424 NPHDDTSFLRVVNFPPRGIGARSIEQLQDISRASGCSLHDGVSAVTGKAGANLGAFVAKI 483 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN-------- 539 L + + L+L + + + + G + ++ L E +N Sbjct: 484 DVLREQTTGLTLREIIELVLQHSGLEEHYKLEKEGQDRLENLAELVNAAESFVSQEGFGR 543 Query: 540 --------------------------------------------EQNSYSSLQELISELE 555 + + +L L + L Sbjct: 544 DAVALPVDELGSRANLALGQSPASQGLDPSAALLSEPLPELLAPDTETGETLSPLAAFLT 603 Query: 556 QYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 A + V++MTVH++KGLE VF+ +F H++ Sbjct: 604 HAALESGDNQAQAGQDAVQLMTVHSSKGLEFDCVFVTGMEEGLFPHENS----------- 652 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 EE RL+YV +TRA +L + Sbjct: 653 -----------------------MSDHDGLEEERRLMYVAITRARKRLYLSYSQTRMLHG 689 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 ++ + + K + + W R + + Sbjct: 690 QTRYHLKSRFFDELPEAALKWITPKNQGFASGLGMGSSGWGGAGNSGASGTRGDWASNVF 749 Query: 735 DEQKIPKKLFSPIKNDINEPYI 756 + + F+ Sbjct: 750 SSKSGSSERFANPPVPPQRNAP 771 >gi|295114066|emb|CBL32703.1| ATP-dependent DNA helicase PcrA [Enterococcus sp. 7L76] Length = 752 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + +V+ N + ++ L + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + QK ++ + +N + D K+ + Sbjct: 91 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150 Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 151 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 +LW + ++ + + + Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + + D VL R + ++ + I Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D IKD++A I + +D +SF ++ P + I K+ + Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E Q + + + I +L + + + L R+ +++ Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501 Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568 E ++ LDEFL+ T ++ + L + +++L + Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 559 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++V +MT+H AKGLE PVVFL+ VF Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594 >gi|325570044|ref|ZP_08145969.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC 12755] gi|325156872|gb|EGC69043.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC 12755] Length = 785 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 104/636 (16%), Positives = 210/636 (33%), Gaps = 108/636 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L + Sbjct: 69 GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVSQLLGSGGEDVWVST 128 Query: 66 FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + KN + ++++ +K LK+ Sbjct: 129 FHSMCVRILRRDVDRIGYSKNFTIIDSSEQNTLMKRVLKELNIDPKKYDPRSILGTISHA 188 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + +++ SL + Y++ + N +DF+DLI+NT L + + + Sbjct: 189 KNELLTPEAYQAMEGSLFEQIVGRCYEKYQKELRNNQCMDFDDLIMNTIRLFQDNEDA-- 246 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 ++ ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 247 -LQFYQRKFHYIHVDEYQDTNHAQYTLVNLLAARF----------RNLCVVGDADQSIYG 295 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + I L ++RST IL ++V N + Sbjct: 296 WRGANMQNILDFEKDYP--------DAATILLEQNYRSTQTILNAANQVIKNNRNRPDKN 347 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ ++ + S AR Sbjct: 348 ---------------------LW-------TENRDGEKITYY-------RGDSERDEARF 372 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I + + D +L R + +I + + Sbjct: 373 IVSEMQKQIAE---------KNRKFGDFAILYRTNAQSRIIEEML----LKANVPYTMVG 419 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I+D++A I + D +S ++ P + K+ ++ Sbjct: 420 GRKFYDRKEIRDILAYLSAIANPRDSISLERIINVPKRGIGATSVEKLRDFANLHEWSLL 479 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + + + + + S + IL RQ+ +++ Sbjct: 480 EAAMNVELANISGKAGKELGSFGMMMDGFAQMVPYLSVTELTKEILEKTGYRQELVNQNN 539 Query: 523 NEVI---DVLDEFLNFTLRNEQNSYSS-----------LQELISELEQYPPTIKRAHSAN 568 E + L+EFL+ T ++ + L +++L ++ Sbjct: 540 LEAQARLENLEEFLSVTQEFDKRFEAQNEDDADAPDEKLSVFLNDLALLSDVDSYEEESS 599 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 V +MT+H AKGLE PVVFL+ +F Sbjct: 600 Q--VTLMTLHAAKGLEFPVVFLIGLEENIFPLSRAL 633 >gi|261496496|ref|ZP_05992876.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307699|gb|EEY09022.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE] Length = 732 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 111/580 (19%), Positives = 203/580 (35%), Gaps = 117/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L K + I + Q ILIDE QDT+ I Sbjct: 176 EIYQIYQDACDRAGLLDFAELLIRAYELFKTKPT---ILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L D + VGD+ QSIY + GA+ + + R Sbjct: 233 QYDLIRLLAGDV----------GKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL+ +++ + +N G + LW Sbjct: 278 ---AQTIRLEQNYRSTGNILSCANELIANNDNRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + F+ L + AR +A I + Sbjct: 314 -------TDSGDGEPVDIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --AECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P + + + R T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQEEQLSGRATSSLLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I+ L + S + ++ + + G + I+ L+E + T + + Sbjct: 466 VELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFVK 525 Query: 542 -NSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L +L + L S + + V +MT+H+AKGLE P VF+V +F Sbjct: 526 PDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 585 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + +E RL YVG+TRA Sbjct: 586 SGMSFD-----------------------------------EGRLQEERRLAYVGITRAK 610 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L I + K + + + R +++ Sbjct: 611 KKLTISYAESRRLYGKEERHVPSRFIAELPEEHIREVRLR 650 >gi|83309824|ref|YP_420088.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82944665|dbj|BAE49529.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum AMB-1] Length = 864 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 117/658 (17%), Positives = 206/658 (31%), Gaps = 120/658 (18%) Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 + +DR T + + AK L Y++ + DF DL+++ + Sbjct: 271 LMATIQRWKDRAVTPDKAAADGGAEGQAKTLYRAYQDRLRSLNACDFGDLLLHVLTVFLS 330 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + ++L+DE QDT++ Q+ +R L + + R + VGD+ Sbjct: 331 DAEA---LARWQGRFRYLLVDEYQDTNVAQYLWLRLLAQ----------THRNICCVGDD 377 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIYS+ GAE +LR ++ ++ L ++RST IL + + E Sbjct: 378 DQSIYSWRGAEVGNILRFEKDFP--------GAKVVRLESNYRSTPHILAAASTLIANNE 429 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G + I H I ++ T +W+ Sbjct: 430 GRLGKTLR--PGIIHEPEAIEKIRTKAVWDG----------------------------- 458 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR +A I + + + +LVR T I Sbjct: 459 EAEARMVAEEIETLQRRGE----------KLSSMAILVRAGFQTREFEERL----ITTGI 504 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRH 461 + L I+D MA R ++S D L+F ++ +P E + I R Sbjct: 505 PYRVIGGPRFYERLEIRDAMAYLRLVVSAADGLAFERVVNTPKRGLGEAAVQTIHMVARA 564 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 E + E + + I+ + + + + IL Sbjct: 565 EQVPLLEAARRLVDTDELKPKARQALARFIEDVDRWRSLLESMPHPELAATILDESGYVD 624 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 + + + ++ L E + + L S LE ++ A+ + V Sbjct: 625 MWKADKSADAPGRVENLKELVAALEEYDS--------LASFLEHVALVMENDSRADLDSV 676 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 IMT+H AKGLE VFL +VF H Sbjct: 677 VIMTLHGAKGLEFDSVFLPGWEEEVFPHSR------------------------------ 706 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS----NEKKSNQRTWYDMVYDS 688 + EE RL YVG+TRA ++++ +N + + R ++ Sbjct: 707 --ALAESGTKGLEEERRLAYVGLTRARKRVLVSFAANRRIYNQWKSQLPSRFVEELPESH 764 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + +K W WS E + + F P Sbjct: 765 VERSGERGLHGGGLAESKAAWNDPAWSRARFGQPRRETAAAPSWGQAKPRESAGGFKP 822 >gi|116493558|ref|YP_805293.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus pentosaceus ATCC 25745] gi|122264978|sp|Q03D71|ADDA_PEDPA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116103708|gb|ABJ68851.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus pentosaceus ATCC 25745] Length = 1235 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 118/710 (16%), Positives = 244/710 (34%), Gaps = 50/710 (7%) Query: 39 METGNPTILKKAQTLQQASQT-----QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93 ++ + L+ + +++ S + L + + Sbjct: 246 LKNAAEKFQNEVDDLKTIIDSLNGSWDDVQQAVSKMKFAQLPRGKKEEVQEFNAYAKSIR 305 Query: 94 PDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 D K++ D++ K+ + + + + + K LDF Sbjct: 306 NDFKDEFNTIADKYFKLSSEQMIAVFKDAHDLMMKLIEVQNQFAERFLQEKLTRRSLDFS 365 Query: 151 DLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 DL + L + IR Q+ N +++DE QD + +Q ++ S+ Sbjct: 366 DLEHFALQIVLDDSEEGQAIRRDFQQKFNEVIVDEYQDINPLQETILTSVAS-------- 417 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 P +F VGD KQSIY+F A+P + + + + Q I L +FRS + Sbjct: 418 -PDPGNMFMVGDVKQSIYAFRMADPSLFISKNNQFK----DEEQADERIILAENFRSMRN 472 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329 + + +F+ + + + + + VQ +V+ DSQ + + Sbjct: 473 VDDFTNLIFNQVMDTEVGEIEYDDDAQLQFGAKYYPDEVQNNTEVMIYDDSQTDINDKEA 532 Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDT 386 T + + IA I + T + K R ++ DI +L + Sbjct: 533 TPIISNKNDGQL-----QMIAQRIQKLFADHTQIYDKKEQKMRDLEYSDIALLHSTGSNN 587 Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 I + Y I + N+ + +MAL + I + D+ +L+SP+ Sbjct: 588 LEIVDTFK----KYGIPIQVNNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSPMV 643 Query: 447 NFSEDDIFKICTQRHETETVY-----------EYIQKFANCGISKFQHVIKYIHELIHIA 495 E+++ + + + +F +K H ++ + +A Sbjct: 644 GLKENELAFLRIGKKNGHYFEALLYFLNEAKLDSNNEFQMQLKTKITHFLEQLDHFSKLA 703 Query: 496 QFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + + D I G + + L + E++S+ L + + + Sbjct: 704 RQSTLVDLLWAIYDETGYLDYVGGMPDGPQRQNNLHALYDRAKGYEESSFKGLFQFVRFV 763 Query: 555 EQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 E+ K + V++MT+H +KGLE P+VFL+D + + + Sbjct: 764 EKMRDKNKDLAENPVVTDVKAVKLMTIHGSKGLEFPIVFLIDAEHGFNTMDEKGRYVLDR 823 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + +I + + + +I K+ E R+LYV +TRA +LII N+ Sbjct: 824 DAGMGITLKDFIHRLEIDTVQKNWIISIKKQKALAEKLRVLYVALTRAEQKLIITGAVNS 883 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +++ + D + R K + I + + Sbjct: 884 ADDTLNKWAEAVDTDETLIPAEARSKVSNFLDWIGMAIMRVPSVVEKYAD 933 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 79/242 (32%), Gaps = 22/242 (9%) Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST---IDTKGKTNL 770 + H T +++ ++ P K ++++ + P ++ Sbjct: 995 FKYHDEAATTTTAYQSVSEIKRVFDDPDKFELNF-SEVDADQHIKPQNRFVTESLMAPRF 1053 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828 + + + G H +LQ + ++ N + +I Sbjct: 1054 MNEATKPKAAEIGTATHLILQQLDLNQPINETIIKDKIGELVMNRVLDEQVANRIRISTI 1113 Query: 829 TRLLENPMMTTAMS--CDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNI 878 ++ + ++ + + E + S + D++I G ID + + Sbjct: 1114 LDFFDSDLGQLMINHPENVHREEAFSLLLPAKGLFPKVKGDDDVLIHGIIDAYFEMEDRV 1173 Query: 879 FIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVF 933 + +YKT +P +E + + Q+++Y + L + + L +S ++ Sbjct: 1174 ILLDYKTDFVLPGSVEQGIEKVINRYQGQVNLYAQALGSIL-KRPVNEKYLYLLSIGRLV 1232 Query: 934 II 935 I Sbjct: 1233 EI 1234 >gi|254491461|ref|ZP_05104640.1| UvrD/REP helicase domain protein [Methylophaga thiooxidans DMS010] gi|224462939|gb|EEF79209.1| UvrD/REP helicase domain protein [Methylophaga thiooxydans DMS010] Length = 723 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 120/692 (17%), Positives = 225/692 (32%), Gaps = 140/692 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + S N + + + + Sbjct: 30 GAGSGKTRVLVHRIAWLIQAEDFSPANILAVTFTNKAAAEMRGRIEDILGYPPGGMWVGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR------------ 113 F L+ L + + + Q D + ++ K +++ + Sbjct: 90 FHGLAHRLL--RSHWKDADLPQSFQILDSDDQLRMIKRIVRAMELDEAQWPPKQAQWYIN 147 Query: 114 ------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVS 166 + + YE+A ++ V+DF ++++ +++L LK+ D Sbjct: 148 GQKDEGLRAKDIQAGNDPYSQKMLAIYQAYEQACQRAGVIDFAEILLRSHELWLKRPD-- 205 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 I + Q IL+DE QDT+ +Q+ +R LT LF VGD+ QSI Sbjct: 206 --ILAQYQQRFRQILVDEFQDTNTLQYAWLRLLTGH----------SGNLFIVGDDDQSI 253 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + +L+ + I L ++RST +IL + V + G Sbjct: 254 YGWRGARIENILQFDNDYPNS--------TTIRLEQNYRSTGNILKAANAVIANNSERLG 305 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 +LW + + F+ + A Sbjct: 306 K---------------------ELW-------TDGEDGTPIQVYNAFNERDE-------A 330 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I+ + Q D VL R + +I + Sbjct: 331 SYLVSQINKWVDDGK----------QRSDTAVLYRSNAQSRVIEEAL----LQANMPYRV 376 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 + IKD++A R + +++DD +F ++ +P + ++ R T Sbjct: 377 YGGLRFFERAEIKDVLAYLRLVANRQDDAAFERIVNTPTRGIGAATLTQLRQYARERGIT 436 Query: 466 VYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 +++ ++ FA + I I L H+ L++ R F Sbjct: 437 MWQSSREMLDAKAFAARAGNALAGFITLIDSLTPEQPDMPLHELTQLVIDETGLRAHFAK 496 Query: 520 ---RFGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEV 572 G I+ LDE T + + + S+ +L + L + + V Sbjct: 497 DKSEKGQGRIENLDELATATRQFVRPQDEEFESMSDLDAFLSHAALEAGENQGDRWEDCV 556 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 ++MT+H+AKGLE P+VF+V +F + + Sbjct: 557 QLMTLHSAKGLEFPMVFMVGMEEGLFPGQKSSDDPL------------------------ 592 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 E RL YVGMTRA L + Sbjct: 593 ----------RLAEERRLCYVGMTRARQTLYL 614 >gi|309805630|ref|ZP_07699672.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners LactinV 09V1-c] gi|308165068|gb|EFO67309.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners LactinV 09V1-c] Length = 779 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 133/804 (16%), Positives = 257/804 (31%), Gaps = 110/804 (13%) Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F A+P L++ + I L +FRS+ ++ +V+ + Sbjct: 1 MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQS-----ERIILSDNFRSSKNVTQIVNNI 55 Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 F EN G++ +++ + +GT + S D +E + D Sbjct: 56 FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLD 115 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + I + D + KR I+ DI +L R + + Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + K+ + +D + + + I + + D+ V +++SPL+ F+E Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221 Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFFTLI 507 + KI + + Y+ I + + + I + + + + I Sbjct: 222 EFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDI 280 Query: 508 LGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561 + G + L+ E + + L + I+ +++ + Sbjct: 281 FQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQ 340 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + +++MT+H +KGLE P+VFL+ + I G+ I Sbjct: 341 PLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTIT 398 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679 + + + S K EE R+LYVG+TRA +LI+ N Q Sbjct: 399 TADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANENIIPDFQNKL 458 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT----------------- 722 ++ + ++ L + ++ S E Sbjct: 459 DAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQA 518 Query: 723 ----------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 P + T +I K P + + Sbjct: 519 SVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNS 578 Query: 755 YILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809 ++N + ++ + L G +H LLQ + I + Sbjct: 579 KLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 638 Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857 +N +L A S + Y E+ S N Sbjct: 639 LQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFND 696 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKD 913 I++ G ID I I +F+YKT +E ++ + QLS+Y L + Sbjct: 697 VNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNN 756 Query: 914 SYPNKSLVC-LLIYVSEPKVFIIP 936 +K + LI +S K+ + Sbjct: 757 L-SDKKVKAKYLILLSINKIVKVD 779 >gi|17546954|ref|NP_520356.1| DNA helicase II protein [Ralstonia solanacearum GMI1000] gi|17429255|emb|CAD15942.1| probable dna helicase II protein [Ralstonia solanacearum GMI1000] Length = 829 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 125/840 (14%), Positives = 248/840 (29%), Gaps = 174/840 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W + +VS + + + + Sbjct: 63 GAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTNKAAKEMTARLSAMLPINTRGMWIGT 122 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F L + L + + + + +K LK Q Sbjct: 123 FHGLCNRLLRAHYRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQYFINGA 182 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ + L A Y+ ++ V+DF +L++ +LL+ D IR Sbjct: 183 KEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFSELLLRCYELLRYNDA---IR 239 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + HIL+DE QDT+ +Q+ ++ L G +P +FAVGD+ QSIY+F Sbjct: 240 AHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEAGV----TPNAIFAVGDDDQSIYAFR 295 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA ++ +R + I+L ++RS +IL + + + G + Sbjct: 296 GANVGNMVDFEREFR--------VAHRIKLEQNYRSHGNILDTANHLIAHNTRRLGKNLR 347 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + A I Sbjct: 348 TD---------AGHGEPVRVYPSATDGQE--------------------------AGWIV 372 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I I + T +I +L R + +I I Sbjct: 373 EEIRERIASGTA----------RSEIAILYRSNAQSRVIEHAL----FSVGIPYKVYGGL 418 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEY 469 + IK +A + + + ++D +F ++ P + ++ ++ Sbjct: 419 RFFERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAAKLYGVSLAAS 478 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528 + +K ++ I ++ + + + ++ A + G + I+ Sbjct: 479 VPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGLDRIEN 538 Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549 L E + + Sbjct: 539 LQELVTAAQAFVAEEGYGVDAIATALPMRHDAMLRIEGGETDSDAVTELVADETPTEMTP 598 Query: 550 LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 L++ L A + V++MTVH AKGLE VVF+ +F H++ Sbjct: 599 LVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEGLFPHENSL---- 654 Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 L EE RL+YV +TRA ++L + Sbjct: 655 ------------------------------LDTDGLEEERRLMYVAITRARERLYLS--- 681 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 V + +W+ + H +P R + Sbjct: 682 -----------FAQSRVLHGQIRYHIRSRFFDELPEATLKWL----TPQHTGYSPTRRAQ 726 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG-LIIH 787 + + + ++ F + NE Y P+ G T ++ + F G + H Sbjct: 727 GGQGMQGDSAWGREWFKRPERGDNEAYTGRPTGGMDTGNTYADTKRAAGTGFRVGQSVFH 786 >gi|255066057|ref|ZP_05317912.1| DNA helicase II [Neisseria sicca ATCC 29256] gi|255049602|gb|EET45066.1| DNA helicase II [Neisseria sicca ATCC 29256] Length = 736 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 98/550 (17%), Positives = 188/550 (34%), Gaps = 120/550 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D A+ I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELI 492 D + + ++ P + + T + T+++ A +K ++ I L Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACN-AGAKATKIAAFVRLIEALR 465 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQ 548 + + IL + + ++ G + +D LDE +N + E +++ L Sbjct: 466 NQVGQMPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILP 525 Query: 549 E---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + +++ L + A V++MTVH AKGLE VFL F Sbjct: 526 DNISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRF 585 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++ EE RL+YV +TRA Sbjct: 586 PSEMSL----------------------------------AERGGLEEERRLMYVAITRA 611 Query: 659 SDQLIICKHS 668 +L I Sbjct: 612 KKRLYITMAQ 621 >gi|297158179|gb|ADI07891.1| ATP-dependent DNA helicase II [Streptomyces bingchenggensis BCW-1] Length = 829 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 123/717 (17%), Positives = 227/717 (31%), Gaps = 132/717 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P VS + + + + + + Sbjct: 127 AAGEMKERVEELVGPRANAMWVSTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 181 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L + F+ T Sbjct: 182 RLMALVCRDLDLDP-KRYPPKSFSAKVSNLKNEL------IDEETFAGQASDGFEKT--- 231 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+D+I+ T +LL+ + + H+L+DE Q Sbjct: 232 ---LAEAYAMYQSRLREANALDFDDIIMTTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQ 285 Query: 187 DTSLIQWEVIRSLTED---FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 DT+ Q+ ++R L V P L VGD QSIY+F GA + +L+ + Sbjct: 286 DTNHAQYTLVRELVGPGSVATVDGGEVIPPAELCVVGDADQSIYAFRGATIRNILQFEED 345 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + I L ++RST IL+ + V EN + + Sbjct: 346 YP--------DATTILLEQNYRSTQTILSAANAVIERNENRRPKN--------------- 382 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW D+ + + + A+ +A I + Sbjct: 383 ------LW------TDAGAGATITGYVADTEHDE--------AQFVADEIDRLTDAG--- 419 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 ++ D+ V R + + + + + ++D++A Sbjct: 420 ------DARSGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDVLA 469 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ 482 R + + ED + +L P E I E T + +++ + Sbjct: 470 YLRVLANPEDTVPLRRILNVPKRGIGERAEAMIDALSLREKITFPQALRRVDEAYGMAAR 529 Query: 483 ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + EL IA+ + P ++ + + + I+ L E Sbjct: 530 SANAVKRFNVLMEELRTIAESGAGPATVLEAVMERTGYLAELQASTDPQDETRIENLQEL 589 Query: 533 LNFTLRNEQ----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 L EQ + +L E + + L I + + +MT+HTAKGLE P Sbjct: 590 AAVALEYEQERGEENPGTLAEFLEQVALVADSDQIPDDDTEGTGVITLMTLHTAKGLEFP 649 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VVFL VF H + EE Sbjct: 650 VVFLSGMEDGVFPHMRALG----------------------------------QTKELEE 675 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 RL YVG+TRA ++L + + + S + + + R ++ + Sbjct: 676 ERRLAYVGITRARERLYLTRSTMRSAWGQPAYNPPSRFLEEIPDQFVRWQRTGPSTP 732 >gi|294671393|ref|ZP_06736243.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306941|gb|EFE48184.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 735 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 97/549 (17%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGAHVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D A+ I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I +L R + +I I + IK +A R ++ +D Sbjct: 352 -EIAILYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P I + T +E A +K ++ I + + Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEAMRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMPLSEIIVGILKDSGLTEHYKTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH +KGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHASKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|315653553|ref|ZP_07906473.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC 55195] gi|315488915|gb|EFU78557.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC 55195] Length = 779 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 132/804 (16%), Positives = 256/804 (31%), Gaps = 110/804 (13%) Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F A+P L++ + I L +FRS+ ++ +V+ + Sbjct: 1 MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQS-----ERIILSDNFRSSKNVTQIVNNI 55 Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 F EN G++ +++ + +GT + S D +E + D Sbjct: 56 FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLD 115 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + I + D + KR I+ DI +L R + + Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + K+ + +D + + + I + + D+ V +++SPL+ F+E Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221 Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFFTLI 507 + KI + + Y+ I + + + I + + + + I Sbjct: 222 EFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDI 280 Query: 508 LGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561 + G + L+ E + + L + I+ +++ + Sbjct: 281 FQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQ 340 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + +++MT+H +KGLE P+VFL+ + I G+ I Sbjct: 341 PLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTIT 398 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679 + + + S K EE R+LYVG+TRA +LI+ Q Sbjct: 399 TADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANEKIIPDFQNQL 458 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT----------------- 722 ++ + ++ L + ++ S E Sbjct: 459 DAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQA 518 Query: 723 ----------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 P + T +I K P + + Sbjct: 519 SVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNS 578 Query: 755 YILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809 ++N + ++ + L G +H LLQ + I + Sbjct: 579 KLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 638 Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857 +N +L A S + Y E+ S N Sbjct: 639 LQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFND 696 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKD 913 I++ G ID I I +F+YKT +E ++ + QLS+Y L + Sbjct: 697 VNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNN 756 Query: 914 SYPNKSLVC-LLIYVSEPKVFIIP 936 +K + LI +S K+ + Sbjct: 757 L-SDKKVKAKYLILLSINKIVKVD 779 >gi|261880622|ref|ZP_06007049.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361] gi|270332663|gb|EFA43449.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361] Length = 847 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 106/679 (15%), Positives = 207/679 (30%), Gaps = 130/679 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + A Y++ ++ +DF+DL+ T +LK + IR K + ++L+DE QDT+ Q Sbjct: 182 VYAEYQQRLRQANAMDFDDLLTVTYRMLKNDEA---IRKKYVGQFQYVLVDEYQDTNFAQ 238 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +++ LT++ + + VGD+ QSIY+F GA+ +L +I Sbjct: 239 QQIVTLLTKE----------QQRICVVGDDYQSIYAFRGAKIDNILNFNKIYP------- 281 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + +L ++RST I+ + + ++ S+ + V ++ Sbjct: 282 -GAKLFKLEQNYRSTQLIVAAANSLMKHNSR---------QILKDVYSKNEKGEKVTVF- 330 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + S A + I + + + Sbjct: 331 -------------------------ETVSDKREAAMVCQEIKRIKKEE---------SCR 356 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + R + + IKD++A R +++ Sbjct: 357 WSDFAILYRTNAQSRTFEDEMRKPEVGMGNCYRIHGGLSFYQRKEIKDIIAYFRLVVNPS 416 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYE-------YIQKFANCGISKFQHV 484 D+ +F ++ P + KI + + +++E Y +SK Sbjct: 417 DEEAFRRIINYPARGIGNTTLQKIIAAAQQHQVSLWEVVCNPHVYQLDVNKGTLSKLSSF 476 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 I I ++ I+ + IS E + +D ++ Sbjct: 477 QALIEGFITKSKTSDALTLGNEIIEQSGIKADLISDKSPEGDSRRENVDALVSGIADFVQ 536 Query: 540 -----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 +Q Y+ L + +S + + N +++ +MT+H+AKGLE P VF+V Sbjct: 537 GQREDDQAEYAGLADYLSTVSLMTDVD--SDDGNGDKLTLMTIHSAKGLEFPTVFVVGME 594 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F YV Sbjct: 595 ENIFPSIMSSGTPRELEEERRLL----------------------------------YVA 620 Query: 655 MTRASDQLIICKHS-----NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 +TRA + + + R D+ +++ + DE Sbjct: 621 ITRAEKHCYLTWSHSRWLYGKMDAFVNPSRFLNDIDPKYMTVRTEGRRMSGRWFDDDDED 680 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------NDINEPYILNPSTID 763 I W N P R + + P+ E P Sbjct: 681 ICRPWDEDVELNQPYARSRQWGGGFSRRSDRLQNSRPVAGQFMADPKPKETASRRPEQAI 740 Query: 764 TKGKTNLESLLSDNQTFNR 782 E L + + R Sbjct: 741 NPFSPAFEERLKQSGRWKR 759 >gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] gi|30139207|emb|CAD86077.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] Length = 1155 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 160/982 (16%), Positives = 314/982 (31%), Gaps = 126/982 (12%) Query: 2 KNRF-GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 ++R + E I + +P S+I + + + + + T++ Sbjct: 227 RDRLESVLSGRIAEAIERLADAVPAGCQSEIIELMQFAAVNLSEAGSADSNTVRWPGNAL 286 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKK-----SPDLKEKLKKSQDEFIKIRDRFN 115 + ++ F LTQ +K + D+KE L + ++ Sbjct: 287 EDRLVWESMADFLLTQTGDWRKQVTKANGFPAPSSVRDADVKEYLNGMKQRMSELLVALQ 346 Query: 116 TYKMF--------------------KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 + + F ++ A +L K + +++ +DF ++ + Sbjct: 347 SEETFRQQLQLLRQLPPERYTDEEWETLQALFSLLKVAAGYLLLVFRQHGQVDFTEIAMA 406 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 L + ++ + +D I+H+L+DE QDTS Q E+++ LT + G RT Sbjct: 407 AVRALGEPEMPTDLALALDYRIHHLLVDEFQDTSSSQAELLQRLTAGWQTGDG-----RT 461 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 LF VGD QSIY F AE L + + + L ++FRS + I+ V+ Sbjct: 462 LFLVGDPMQSIYRFRQAEVGLFLDIRD----SGYFGQIQMRFLRLSVNFRSQSGIVEWVN 517 Query: 276 KVFSIP-ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + F + +S + + + G + D Sbjct: 518 RYFPRILPDTDSVSTGAVSYASSVAFHAASSGEAVRIYP---------------YLQKDD 562 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 E +I+A+ A I VLVR R I R Sbjct: 563 RAEAEQVGAIVAQARAAQ-------------------PDGRIAVLVRNRSHLASIVVHLR 603 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + + L + I+DLMAL R ++ D ++++ +L++P S D+ Sbjct: 604 ----RKGLRFQAVEIEQLAQRVVIRDLMALTRALVHPADRIAWLALLRAPFCGLSLQDLH 659 Query: 455 KICTQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 + + + + G + V+ + + + S I Sbjct: 660 TVANTLPQHVLIDSLRACAGSGVLSEEGGQRVNRVLPILERALMLYDRMSLRRCVEGIWV 719 Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSAN 568 + G + +V + L + Y +QEL L + A Sbjct: 720 SLGGPASVQNETDLADAEVYFQLLE---NFDVTGYRPDIQELDERLVRL---FALPDVAA 773 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS--- 625 + +++MT+H AKGLE V L G + + + P S Sbjct: 774 DDSLQLMTLHKAKGLEFDTVILPGLGKSPRRDQEKLLNWLEFHDQSQHPGLLCAPISAAG 833 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 +N I + ++ KK T E RLLYV +TRA L + H + + N Sbjct: 834 SDKNPISAYILSEEKKRTALEEARLLYVAVTRAKHNLHLLGHLRIDPDMQEN-------- 885 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + + + L + + + L L + Sbjct: 886 -----DALKPPEDTLLARLWPAVAADFLARSREAAIGDLPASNVHTGLQLVGMVRLVSGW 940 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--------QVIFTLP 797 + + + ++ + G+++H LL + + Sbjct: 941 QPPPLPKAVAVAMHANEAGTTEEPVDFDWAGEPARLVGVVVHCLLHRIGLIGVENVDHQD 1000 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL-----ENPMMTTAMSCD---SYSEV 849 K S ++ + + + + R L E+ +S + E Sbjct: 1001 LEALKLAGRSLLIQSG--ITPRHLEKAVQQVARALRTMCVEDETGRWILSNRHQEARCEW 1058 Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPY----THIAQL 904 ++S I ID+ + + +I +YKT H +E + QL Sbjct: 1059 ALSVPTAIAAGHSISVSIIDRTFVDAAGVRWIIDYKTGSHTGGSLEEFLDREQLRYRPQL 1118 Query: 905 SIYEKILKDSYPNKSLVCLLIY 926 Y ++L+ ++ + L + Sbjct: 1119 DRYAQVLQRM-EDRPMHLALYF 1139 >gi|317476225|ref|ZP_07935476.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] gi|316907636|gb|EFV29339.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] Length = 760 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 94/620 (15%), Positives = 188/620 (30%), Gaps = 121/620 (19%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL+ T L + + + + +IL+D Sbjct: 169 AAKMPAIRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPD---VLARYQSQFRYILVD 225 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ L ++ R + VGD+ QSIYSF GA+ +L ++ Sbjct: 226 EYQDTNFAQHSIVLQLAKE----------HRHVCVVGDDAQSIYSFRGADIDNILYFTKV 275 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I++ + + + S Sbjct: 276 YP--------GTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIRKEVFS------------ 315 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + + I+ + Sbjct: 316 ---------------EKEKGEAIGVYQAYSDVEEGDI--------VINKIAELRRQG--- 349 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R + IKD +A Sbjct: 350 ------NYAYSDFAILYRTNAQSRVFEEAMR----KRSMPYRIYGGLSFYQRKEIKDTIA 399 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R ++ D+ +F ++ P + + KI +++ + + Sbjct: 400 YFRLTVNPNDEEAFKRIINYPARGIGDTTVSKITAAATDHNVSLWTVLCEPLTYGVNINK 459 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 ++K Q + I + ++ T I+ E + ++E Sbjct: 460 GTVTKLQSFRDLMTGFIESVSEKNAYELGTEIIRQSGIIGDVCQDNSPENLSRKENIEEL 519 Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 N E N+ +L + +SE+ + ++ +MTVH+AKGLE Sbjct: 520 ANGMSDFCAQRQEEGNNNITLGDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFR 578 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA D + + K + + D ++ + Sbjct: 605 ERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGSPSRFLKDIDVRFLKLPQDAGLGRRVD 664 Query: 707 DEWIAYEWSTHHPENTPLER 726 + ++ T P Sbjct: 665 ESAASFRSRTRQEVIAPTVP 684 >gi|218550068|ref|YP_002383859.1| exonuclease V subunit beta [Escherichia fergusonii ATCC 35469] gi|218357609|emb|CAQ90248.1| exonuclease V (RecBCD complex), beta subunit [Escherichia fergusonii ATCC 35469] Length = 1186 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 126/878 (14%), Positives = 266/878 (30%), Gaps = 129/878 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + D+ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFDAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDAALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + L +GD K Sbjct: 368 ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HQQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGVVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ G V + + P + W + S Sbjct: 470 AFMFREIPFVPVKSAGKNRGLHFAV----------NGEKQPAMKMWLMDGEYCSVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 520 TMAQVCAMQIRDWLQAGQRGDALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLL-- 577 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + T Sbjct: 578 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMTPEREDTLRSALATSMMGLNALDIENLNT 636 Query: 459 QRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 ET ++ + + + ++ V+ + L S + +L G ++ Sbjct: 637 ----NETAWDAVVEEFDGYRQLWRKRGVMPMLRAL------MSARNIAENLLATAGGERR 686 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 687 LTDIL------HISELLQQAGTQLESEHALVRWLSQHILEPDSNAASQQMRLESDKHLVQ 740 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + + ++ + Sbjct: 741 IVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------QSFEAMLDLSEAK 787 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + ++ + E RLLYV +TR+ L + +KK + Sbjct: 788 ESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSALGRLLQK 847 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPEN------TPLEREETIKQLMDEQKIPKKLFS 745 E L I T + EE + + + Sbjct: 848 GEPQDAAGLRACIESLCDDDITCQTPPRPDNIRWHMVESASEELSARNLQRSPGDNWRVT 907 Query: 746 PIK------------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793 + + K + + + + G +H L + + Sbjct: 908 SYSGLQQRGHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASPGTFLHSLFETL 967 Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVS 850 + W + +I R N ++ D E+ Sbjct: 968 DFSQPVDSAWVREKLELDGFETWWEPVLTEWIDAILRAPLNETGISLSQLTERDKQVEME 1027 Query: 851 VSG--------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYK 884 ++ + ++ G ID + Q ++ +YK Sbjct: 1028 FYLPITKPLIASQLDTLIRQFDSLSAGCPPLDFLQVRGMLKGFIDLVFRHQGRYYLLDYK 1087 Query: 885 THHHVPQEIEHIPY---------THIAQLSIYEKILKD 913 ++ + + Q +Y L Sbjct: 1088 SNWLGEDSSAYTQQAMAAAMQEHRYDLQYQLYTLALHR 1125 >gi|296130376|ref|YP_003637626.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109] gi|296022191|gb|ADG75427.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109] Length = 858 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 131/809 (16%), Positives = 238/809 (29%), Gaps = 148/809 (18%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P S + + T+ L+ + + Sbjct: 135 AAAEMRERVEQLVGPSAQRMWVSTFHSACVRILRREAATL-----GLRTSFSIYDQADSQ 189 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 LL+ + P K + + K LK++L D F + Sbjct: 190 RLLTLVARELELDP-KRYPAKALGHKISALKDELVDP--------DAFAASNGGGRSDEF 240 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 T+ + Y++ ++ LDF+DLI+ T LL+ + + H+L+DE Q Sbjct: 241 DTVLAQVYTRYQQRLQQANALDFDDLIMRTVHLLQ---AFPQVAEHYRRRFRHVLVDEYQ 297 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L + L VGD QSIY+F GA + ++ + Sbjct: 298 DTNHAQYVLVRELAGVGEATEGGVGRG-ELTVVGDADQSIYAFRGASIRNIMEFEEDYP- 355 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + I L ++RST IL+ + V S Q Sbjct: 356 -------DATTILLEQNYRSTQTILSAANAVISKNSGRQAKR------------------ 390 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW DS PQ ++ + + AR +A I + G Sbjct: 391 ---LW------TDSGAGPQIVAYVADTEHEE--------ARFVAEEIDRL---------G 424 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++ D+ V R + + + + + IKD +A R Sbjct: 425 DSESVRPGDVAVFYRANAQSRALEEVL----VRVGLPYKVVGGTRFYERKEIKDAIAYLR 480 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479 + + +DD+S +L P E + + + + Sbjct: 481 AVANPDDDVSTRRILNEPKRGLGERSEAMVAAFAERERVSFGAALARLDEVPGLGSRALT 540 Query: 480 KFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + + EL +A + P L S + +D L E Sbjct: 541 GLRAFASMLDELRDLAVSGAGPAQVLGAALDRSGYLATLRSSDDPQDGSRVDNLAELHAV 600 Query: 536 TLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNE------------VRIMTVHTAKG 582 E++ L + + + + + ++ V +MT+HTAKG Sbjct: 601 AAEFEESDPEGDLTDFLERVSLVADSDQIPVPDGADDEATVAAARDAGVVTLMTLHTAKG 660 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL F H Sbjct: 661 LEFPVVFLTGMEDGTFPHMRSL----------------------------------ADPD 686 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YVG+TRA +L + + + + V + F + I Sbjct: 687 QLAEERRLAYVGLTRARQRLYVSRAAVRT----------AWGVPNEFPPSRFLDDIPDEL 736 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 + + + E+ P+ + EP ++ Sbjct: 737 VDWRRRESSTSRLRGSWGSGFGSGGGRSGSSWGERGGSGSSSGPVTREKREPLPRTGASF 796 Query: 763 DTKGKTNLESLLS-----DNQTFNRGLII 786 + LS + + G ++ Sbjct: 797 GSATPRGDVPDLSVGDKVTHDAYGLGTVV 825 >gi|260914154|ref|ZP_05920627.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] gi|260631787|gb|EEX49965.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] Length = 725 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 186/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L++ +L K+ V I + + HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLLRAYELWIKKPV---ILQRYQERFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + ++ L + VGD+ QSIY + GA+ + + R K Sbjct: 234 YAWVKLLAGQ----------QGNVMIVGDDDQSIYGWRGAKIENIQRFLDDFPK------ 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL + + + N G + LW Sbjct: 278 --AETIRLEQNYRSTGNILESANHLIANNTNRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + F+ L + A +A I I + Sbjct: 314 ------TEGEKGDPVGIYAAFNELDE-------ALFVAAQIKQWIENGG----------K 350 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 351 LNDCAVLYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANRD 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + + R + T+++ Q + + Sbjct: 407 DDAAFERVINTPARGIGDRTLDILRNLTRERSVTLWQATQLAIQENLLTGRAATALLRFM 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + IH L ++ + + G + I+ L+E + T + Sbjct: 467 ELIHSLQQDTAEMPLFAQTDFVIKHSGLYEMYKQEKGEKGEVRIENLEELVTATKEFVKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L +L + L ++ H V +MT+H+AKGLE P VF+V +F Sbjct: 527 DEAEDLSDLTAFLTHASLEAGEEQASPHQEYVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKQ 612 Query: 661 QLIICKHSNTS 671 +L IC + Sbjct: 613 KLTICYAESRR 623 >gi|330812675|ref|YP_004357137.1| putative DNA helicase II [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380783|gb|AEA72133.1| putative DNA helicase II [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 727 Score = 285 bits (729), Expect = 3e-74, Method: Composition-based stats. Identities = 115/641 (17%), Positives = 210/641 (32%), Gaps = 124/641 (19%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + LS F Q+ ++ + I + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S L + + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 HPG---LLAHYQKRFRHVLVDEFQDTNAVQYAWLRLLAK----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + + Sbjct: 252 DQSIYGWRGAKIENIHQYSADFP--------DAEVIRLEQNYRSTAGILKAANALIANNT 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDGGEGEAINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T + DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R I + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPTRGIGEKTVEAIRDHARH 434 Query: 462 ETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E + + + + I +L H ++ Sbjct: 435 CHVSMWEAMHQLVANKGMTGRAAGALKAFMDLIEDLAAKCGEMPLHLMTQTVIEQSGLIA 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570 + G ++ L+E ++ E L L + L + + Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARNFESTEEDEDLTPLSAFLGHASLEAGDTQADEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA L++ Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVLTYAETRR 621 >gi|310766602|gb|ADP11552.1| exonuclease V subunit beta [Erwinia sp. Ejp617] Length = 1178 Score = 285 bits (729), Expect = 3e-74, Method: Composition-based stats. Identities = 137/968 (14%), Positives = 311/968 (32%), Gaps = 143/968 (14%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + + K W I+ + + + + +Q + + + Sbjct: 228 ARISMLKQAWLAAGNLQQVIDASGVDRRSYNSKHLPNWLEKISLWAQAETQDYQLPKDLE 287 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 F + + T++ L +++ E + +RD + + + Sbjct: 288 RFGQRILLEK----TKKGEPPRHPLFDQIDAFLAEPLSLRDLVIARALQQ-----VRFVT 338 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 ++ K+ + L F+DL+ + L++ + I Q LIDE QDT Sbjct: 339 ------QQEKRLHGQLGFDDLLGRFDFALQQPG-GEALASAIRQRYPVALIDEFQDTDPQ 391 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + R+L + L +GD KQ+IY+F GA+ ++ + T Sbjct: 392 QYRIFRTLYR--------RQADSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT-- 441 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 L ++RS+ ++ V+++F +N +E + + G +VQ Sbjct: 442 --------LETNWRSSPAMVNAVNQLFLRQKNPFLFNEIPFINVNPAAPNHGLNFSVQ-- 491 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNG 366 + P + W + + +AR+ A I + I + G Sbjct: 492 --------GKVQPALQFWLQPGNGVGVSDYQQFMARQCAAEICRWLTAGQQGEALIGNAG 543 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 K+ +QA DI VLVR R + ++ L SV ++R + ++++ L + Sbjct: 544 KQSPVQASDITVLVRSRSEAAVVREALNAL---AIPSVYLSNRDSVFTTPEAREMLWLLQ 600 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486 +L+ E + L + LF + + + + + + + + V+ Sbjct: 601 AVLAPEQERVLRSALATSLFGTDALALDALSQDERAWDALVDEFVDYRQRWLQ--RGVLP 658 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543 + EL+ +L + G ++ + E L L +E Sbjct: 659 MLRELMMKR------QIAENLLASDSGERRLTDLL------HVGELLQEASATLDSEHAL 706 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L + + + + + ++ + V+I+T+H +KGL+ P+V+L + Sbjct: 707 VRWLAQQVEQPDGQSSVQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN-------- 758 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 N+ + + I+ ++ E RLLYV +TR+ Sbjct: 759 -----FREANNGVYHDRQTFTALLDLQQSEESIELAEQERLAEDLRLLYVALTRSVFHCS 813 Query: 664 ICKHS--NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-E 720 + + +K+ N + E L ++ A + Sbjct: 814 VGIAPLIKGARKKEGNSDLHCSALGYLVQQGEPADASGLLAALQALNGDAIALMRPAEAD 873 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKN-------------DINEPYILNPSTIDTKGK 767 TP + ++T Q++ + +P+ L + + L+ Sbjct: 874 ATPWQAQQTEPQILSSRTLPRSLRDNWRVTSYSGLQQHGHSIALELLPRLDVDAAGEASN 933 Query: 768 TNLES--LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + + + G +H L + + + +++ + + Sbjct: 934 EPVPQLTPHTFPRGAGPGTFLHGLFETLEFTTPLDEEWLAQQL---SSQGLGDEWQPVMR 990 Query: 826 LSITRLLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS---------- 865 + R+L P+ + + +E + +S + D ++ Sbjct: 991 DWVERILHTPLNETGVSLYQLPAQARKAELQFYLPISRLLTAEALDRVVRQDPLSQPCPP 1050 Query: 866 -----------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905 G ID + Q ++ +YK++ + + Q Sbjct: 1051 LDFHQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTREAMAQAMQAHRYDLQYQ 1110 Query: 906 IYEKILKD 913 +Y L Sbjct: 1111 LYTLALHR 1118 >gi|160889899|ref|ZP_02070902.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492] gi|317478904|ref|ZP_07938052.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] gi|156860891|gb|EDO54322.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492] gi|316904938|gb|EFV26744.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] Length = 784 Score = 285 bits (729), Expect = 3e-74, Method: Composition-based stats. Identities = 99/664 (14%), Positives = 199/664 (29%), Gaps = 123/664 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL+ T L + + + ++ +IL+D Sbjct: 169 AAKVPALRDIYQRYWERCRRADAMDFDDLLFYTFLLFRDHPE---VLARYQEQFRYILVD 225 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ L ++ + + VGD+ QSIYSF GA+ +L ++ Sbjct: 226 EYQDTNFAQHSIVLQLAKN----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 275 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + + Sbjct: 276 YP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNQ--------------------- 306 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 W+ + + + + + + I+ + Sbjct: 307 -------WQIRKEVFSEKEKGEAIGVYQAYSDVEEGDI-------VVNKIAELRRE---- 348 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + D +L R + + R + IKD++A Sbjct: 349 -----KRYAYSDFAILYRTNAQSRIFEEAMR----KRSMPYRIYGGLSFYQRKEIKDVIA 399 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVY-------EYIQKFAN 475 R I++ D+ +F ++ P + + KI +++ Y F Sbjct: 400 YFRLIVNPNDEEAFKRIINYPARGIGDTTVGKIIAAATGHNVSLWTVLCEPLAYGLNFNK 459 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + K Q + I I A + ++ I+ E + ++E Sbjct: 460 GTVGKLQAFRELISAFITDAAEKNAYEIGADIIRQSGIINDVCQDNSPENLSRKENIEEL 519 Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N E L + +SE+ + ++ +MTVH+AKGLE Sbjct: 520 VNGMSDFCAQRQEEGKPNVLLGDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFK 578 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D R+ + + Sbjct: 605 ERRLFYVAITRAEEHCFLSYAKTRFRYGKMEFGSPSRFLKDIDIRFLRLPQDAGMFRRVE 664 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +E A+ + +RE+ + + K + PS Sbjct: 665 EEAAAFRR--ENARGFAPDREDAPYGGKERVSVRPKQQIIAPTVPRNLKRVAPSANTAST 722 Query: 767 KTNL 770 + Sbjct: 723 SPSA 726 >gi|114330786|ref|YP_747008.1| UvrD/REP helicase [Nitrosomonas eutropha C91] gi|114307800|gb|ABI59043.1| ATP-dependent DNA helicase UvrD [Nitrosomonas eutropha C91] Length = 748 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 92/584 (15%), Positives = 182/584 (31%), Gaps = 116/584 (19%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 ++ Q ++ + + YE + +DF +L++ +LL Sbjct: 138 RQLQWFINNAKEEGLRASQVDTRGSFNRTLAECYQVYEAVSMRGGTVDFAELLLRCYELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R HIL+DE QDT+ +Q++ I+ L + +FAVG Sbjct: 198 SRNEI---LRDHYRGRFEHILVDEFQDTNRLQYQWIKLLAG------SGSQQHAAIFAVG 248 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + ++ II L ++RS +IL + + Sbjct: 249 DDDQSIYAFRGAHVGNMRDLEKDF--------SVPKIIRLEQNYRSQGNILDAANALIEN 300 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + LW + + + D Sbjct: 301 NKGRLGKN---------------------LW------TAAGKGESVRIYYAATDVDETS- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 I I + + +I +L R + ++ + Sbjct: 333 -------FIVDEIKALHAEG----------LSLSEIALLYRSNAQSRVLEHGL----FNA 371 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 IS D +K +A R + S +DD + + ++ P + ++ Q Sbjct: 372 SISYRVYGGMRFFDRQEVKHALAYLRLVASPDDDNALLRVINFPPRGIGARTLEQLQDQA 431 Query: 461 HE-TETVYEYIQK----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 ++++ K + + + + + + ++ Sbjct: 432 EILGTSLWQAALKVCEGRKAVTTRGDQPGRGIAGFVNLVLSMQQACEGQPLPEIIRRVVD 491 Query: 510 AKKGRQQFISRF--GNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS 566 + + NE ++ L E +N + SL ++ Sbjct: 492 QSGLVAHYQAEREGNNERLENLKELVNAATSFVHEAEDDSLTAFLAHASLEGGE--HQAE 549 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 + V++MTVH AKGLE VF+ +F H++ + Sbjct: 550 GYQDAVQLMTVHAAKGLEFHSVFISGLEEGLFPHENSRNEPNG----------------- 592 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL+YV MTRA +L + + Sbjct: 593 -----------------LEEERRLMYVAMTRARQRLYLSYAESR 619 >gi|302340417|ref|YP_003805623.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301637602|gb|ADK83029.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 1137 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 155/986 (15%), Positives = 295/986 (29%), Gaps = 99/986 (10%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVS--LSMETGNPTILKKAQTL-------QQASQTQ 60 E + L +S ++ L ++ G + A L + Sbjct: 174 GELLARQEEHLRSEIPRLLSGLDALSQQILRLDPGAHKQIADAHALFSEHDIGELFEAGV 233 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + S+L S P+ I E N + + ++ ++ ++ T + Sbjct: 234 DRPDDLSVLLSQLTADLKKPRGRI--AEGNVDALEYRDLVENWREGAGLAVSAAETLLAW 291 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + + YE+ K+ ++ F D+ LL++ R +I Sbjct: 292 PLFQELGEVIDRFRSSYEQEKRMTGIVTFRDVPAMAVRLLEEDPE---FRSSWKHAFRYI 348 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-----PRTLFAVGDEKQSIYSFHGAEPK 235 +IDE QD + +Q +++ L E + P LF VGDEKQSIY F GAE Sbjct: 349 MIDEFQDNNDLQRKLLYLLAERPERMEKGVPRADELVPGKLFFVGDEKQSIYRFRGAEVG 408 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 R ++L ++RS ++ + F S ++ Sbjct: 409 VFKRLGEEL------VSAGGVSLDLSRNYRSEPALIGFFNDFFPRVFADADRSYEAR--- 459 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA-SILARRIAYTIS 354 + +P+ + S + A A +A I Sbjct: 460 --------------FRPLSSREKTEGVSPRISLFYYPGSSEEEALPAPEAEAWYLARRIR 505 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 M+ + G DI +L+R + R L I L Sbjct: 506 EMVEKKELTIAGG--AADYGDIALLMRSSGNQISFERAFRRL----GIPYTVQSARALFL 559 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQ 471 D L + L ED L++ +L+SP S+D I + + E + Sbjct: 560 EAPASDFYQLLQLALYPEDRLAYFSLLRSPFAALSDDVIAAVMLREQEIHAAPFALDPDD 619 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLD 530 +++ + + A + + R + V + D Sbjct: 620 PILGDEGERYRLAGQAWRMVRQEADRVPISELIRRLWTGFGYRYAVLRNPDYHVYLEYYD 679 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585 F L ++ +L + L + VRIM++H +KGL+ Sbjct: 680 YLFEFALLADRRG-ENLVTFLRFLRKNLGKYEKVEEVEPSRQEERGVRIMSIHKSKGLQF 738 Query: 586 PVVFLVDTGS-QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 PVVF+ GS H+ + P L P +S N ++ + Sbjct: 739 PVVFVAGCGSTGRREHEGASPFQLHPELGVTLSAPSRERKSGKANFFYRQGLELENEQEV 798 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 E RLLYV TRA L + SN K + + + + + + Sbjct: 799 AELKRLLYVAATRAECHLFFSGYHGRSNRKMDGLGRFALLNWIGKGFGAESDQWECDPAF 858 Query: 705 NKDEWIAYEWSTHHPENTPL--EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-- 760 I + E + + + + +E + + L P + P +++ + Sbjct: 859 ESHIEIIPPVTIEEIERNVVSKRQGPPLPEAAEEYRKAEILAFPAPVEAFSPSLVSAAIS 918 Query: 761 ----------------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-----IFTLPEH 799 + L + + G + H+L++ + Sbjct: 919 RLSVPQMADLKGQRDLSASDSELPVDRYLGGEERITAFGSLCHRLIEEGITQGVVKGDVR 978 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859 + K + L + + S SEV+ + Sbjct: 979 DLPTPFRALSDKASSLILDTAVDLARSFMDAPFGRLARQEQQAGGSVSEVAF---LFLTP 1035 Query: 860 KDIIISGRIDQISI---SQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915 + G ID + + ++K+ P H+ QL++Y + Sbjct: 1036 AGRFVDGSIDLLLERGPDGGAEAVVVDFKSDRGDD------PEHHLPQLAMYREAASHL- 1088 Query: 916 PNKSLVCLLIYVSEPKVFIIPQNKLN 941 K + L Y+ + K I + L+ Sbjct: 1089 TKKPVRTFLWYLRKKKAVEIETDGLD 1114 >gi|307257392|ref|ZP_07539162.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864242|gb|EFM96155.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 732 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 112/551 (20%), Positives = 190/551 (34%), Gaps = 121/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAG----------KTGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ P E + I R+ T+++ IQ + + S Sbjct: 406 QDDAAFERVINIPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGET--QASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 609 AKKKLTISYAE 619 >gi|309811913|ref|ZP_07705685.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185] gi|308434125|gb|EFP57985.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185] Length = 897 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 120/812 (14%), Positives = 244/812 (30%), Gaps = 144/812 (17%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + VS + + + L+ + Sbjct: 164 AAAEMRERVEQLVGGAANAMWVSTFHSACVRILRREAKHV-----GLRSTFSIYDAADSQ 218 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + + +LK +L +++ + Sbjct: 219 RLMAMVTRDLDLDP-KRYPPKSFSFQVSNLKNELIDAEEAAKRAETDQE----------- 266 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y++ ++ LDF+D+I+ T +L+ + + HIL+DE Q Sbjct: 267 -RKVAEAYRLYQQRLRQANALDFDDIIMTTVTILQ---AFPQVAEHYRRRFRHILVDEYQ 322 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSP-------------RTLFAVGDEKQSIYSFHGAE 233 DT+ Q+ ++R L S L VGD QSIY+F GA Sbjct: 323 DTNHAQYVLVRELAGGEHASGGMASQDAEGDSRATSAVPMADLCVVGDADQSIYAFRGAT 382 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 + ++ + + I L ++RST +IL + V + + S Sbjct: 383 IRNIVEFEEDYPN--------ATTILLEQNYRSTQNILGAANSVIERNPERRKKNLWS-- 432 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 D + + + S A +A TI Sbjct: 433 -------------------------DQGDGEKIVGYVA--------DSEHDEAAFVARTI 459 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + G ++ KD+ V R + + + + Sbjct: 460 DKL---------GDDHGVKPKDVAVFYRTNAQSRALEEVF----VRVGLPYKVVGGTRFY 506 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK 472 + IKD +A R I + D ++ +L +P + + E T E + + Sbjct: 507 ERKEIKDALAYLRVISNPADTVNLRRILNTPKRGIGDRAEACLGALAERERITFIEALAR 566 Query: 473 ------FANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE- 524 A +S + + + L + S IL ++ + + Sbjct: 567 ADEAPGIATRSVSAVKGFTEILESLRQTRESGSGVGPLIEAILERTGYLKELRTSKDPQD 626 Query: 525 --VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTA 580 I+ L E + + N ++L++ + ++ + + V +MT+HTA Sbjct: 627 ETRIENLAELVAVANEFDDNYPGATLEDFLEQVSLVADADEIPKDAEDQGVVTLMTLHTA 686 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE PVVFL F H Sbjct: 687 KGLEFPVVFLTGMEDGTFPHMRALG----------------------------------D 712 Query: 641 KSTQEEYNRLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 EE RL YVG+TRA ++L + + + N + + + Sbjct: 713 TKELEEERRLAYVGITRARERLHLSRAAVRSAWGAPQYNPPSRFLGEIPEEFVHWEREAT 772 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 +S + + ++ + ++ S ++ + Sbjct: 773 AFASSQPRGYAAFGSGGGSPYGSGGSRHDDDGPVIGRGSAPVARMSSSGRSSGAGSFSTT 832 Query: 759 PSTIDTKGKTNLESLLSDN----QTFNRGLII 786 ++ +G + +L + + +F G ++ Sbjct: 833 KNSAVGRGMREIPNLDAGDKVTHDSFGLGTVV 864 >gi|309809879|ref|ZP_07703729.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners SPIN 2503V10-D] gi|308169831|gb|EFO71874.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners SPIN 2503V10-D] Length = 779 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 133/804 (16%), Positives = 258/804 (32%), Gaps = 110/804 (13%) Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD KQSIY F A+P L++ + I L +FRS+ ++ +V+ + Sbjct: 1 MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQS-----ERIILSDNFRSSKNVTQIVNNI 55 Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 F EN G++ +++ + +GT + S D +E + D Sbjct: 56 FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLD 115 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391 + + I + D + KR I+ DI +L R + + Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + K+ + +D + + + I + + D+ V +++SPL+ F+E Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221 Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFFTLI 507 + KI + + Y+ I + + + I + + + + I Sbjct: 222 EFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDI 280 Query: 508 LGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561 + G + L+ E + + L + I+ +++ + Sbjct: 281 FQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQ 340 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + +++MT+H +KGLE P+VFL+ + I G+ I Sbjct: 341 PLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTIT 398 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679 + + + S K EE R+LYVG+TRA +LI+ N Q Sbjct: 399 TADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANENIIPDFQNKL 458 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT----------------- 722 ++ + ++ L + ++ S E Sbjct: 459 DAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQA 518 Query: 723 ----------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754 P + T +I K P + + Sbjct: 519 SVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNS 578 Query: 755 YILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809 ++N + ++ + L G +H LLQ + I + Sbjct: 579 KLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 638 Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857 +N +L + A S + Y E+ S N Sbjct: 639 LQN--KLNPDIIPHLSKNDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFND 696 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKD 913 I++ G ID I I +F+YKT +E ++ + QLS+Y L + Sbjct: 697 VNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNN 756 Query: 914 SYPNKSLVC-LLIYVSEPKVFIIP 936 +K + LI +S K+ + Sbjct: 757 L-SDKKVKAKYLILLSINKIVKVD 779 >gi|319638964|ref|ZP_07993722.1| DNA helicase II [Neisseria mucosa C102] gi|317399868|gb|EFV80531.1| DNA helicase II [Neisseria mucosa C102] Length = 735 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 100/582 (17%), Positives = 193/582 (33%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + + +FAVG Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGNNAA----------VFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I + +I VL R + +I Sbjct: 333 -----AQFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P I + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHTLAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E A +K ++ I L + + IL + + ++ Sbjct: 434 NEQGITLWQAACNAGAKAAKIAAFVRLIEALRNQVGQMPLSEIIVGILKDSGLTEYYRTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ +L E +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH +KGLE VFL F + Sbjct: 554 AGEKAVQLMTVHASKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|332139606|ref|YP_004425344.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype'] gi|327549628|gb|AEA96346.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype'] Length = 723 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 114/704 (16%), Positives = 215/704 (30%), Gaps = 138/704 (19%) Query: 1 LKNRF---GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57 L N G ++ L+++ W + ++ + + + ++L S Sbjct: 22 LSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVTFTNKAAKEMRGRIESLMGRS 81 Query: 58 QTQCIEERFSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR- 113 F L+ L + +N + + + ++ LK + R Sbjct: 82 LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLIRRILKAMNLDEKHWAPRQ 141 Query: 114 ------------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 + + + A Y++A ++ ++DF +L++ ++L Sbjct: 142 IQWYINGNKDEGLRPQHIETHGDHIQKTMREVYAAYQDACDRSGLVDFAELLLRAHELWA 201 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 K + + +L+DE QDT+ IQ+ +R L + VGD Sbjct: 202 KNPE---VLAHYQRRFRAVLVDEFQDTNNIQYAWLRMLCS---------GGDNNIMIVGD 249 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GA + + K + I L ++RST +IL + V Sbjct: 250 DDQSIYGWRGANVDNIQHFLKDFNK--------PNTIRLEQNYRSTGNILKAANTVIDNN 301 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 G +LW + S + F+ L + Sbjct: 302 TGRLGK---------------------ELW-------TEDAQGELISVYAGFNELDE--- 330 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR I I + + D +L R + ++ Sbjct: 331 ----ARFIVSKIKDWLNQGNAL----------SDTAILYRNNAQSRVLEEAL----LHEG 372 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + IKD + R + DD +F ++ +P E + ++ R Sbjct: 373 LAYRIYGGLRFFERQEIKDALGYLRMVSHPHDDAAFERVVNTPSRGIGEKTLSQVRDAAR 432 Query: 461 HETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 ++++ Q N G K Q + I EL + Sbjct: 433 MHNCSMWQACQLLINEGGFKGRALNAMQSFVLLITELEQTTLDEPLDQQADKAIKQSGLY 492 Query: 515 QQFISRFGNEVI---DVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSA 567 + + G + + L+E + E + L ++ Sbjct: 493 AMYQAERGEKAQARLENLEELVTACKTFIVPEEAEEMTPLAAFLAHASLEAGET--QADK 550 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + + V++MT+HTAKGLE P+VFL +F + Sbjct: 551 DQDAVQMMTIHTAKGLEFPLVFLAGVEEGMFPSQMTNDEPG------------------- 591 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVGMTRA +L I + Sbjct: 592 ---------------RMEEERRLCYVGMTRAMQKLYITYAESRR 620 >gi|300932549|ref|ZP_07147805.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM 45100] Length = 864 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 114/757 (15%), Positives = 215/757 (28%), Gaps = 173/757 (22%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + P T + +A+ Sbjct: 108 AAGEMRERVVDLVGPQAEKMW--------------VSTFHSMCVRILRANANLVPG---- 149 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKE-----KLKKSQDEFIKIRDRFNTYKMFKS 122 L++ F K +IT I DLKE L + ++ ++ Sbjct: 150 -LNTNFTIYDSDDSKRLITMVIKDAGMDLKEFAPRSVLSVISNWKNELVGPEAALAEAQA 208 Query: 123 TLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 T+ L A Y+ + +DF+DLI +L+ + + H+L Sbjct: 209 DSNPHTINIATLYATYQRRLRAANAVDFDDLIGEVVGILRSNPA---VTEHYRRRFRHVL 265 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT+ Q+ ++ +L T L VGD QSIY+F GA + + + Sbjct: 266 VDEYQDTNHAQYVLVSTLV-------GTGEEAGELCVVGDADQSIYAFRGATIRNIEEFE 318 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 R + I L ++RST ILT ++V + + Sbjct: 319 RDYPN--------ATTILLEQNYRSTQTILTAANRVIERNQGRREKK------------- 357 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW + ++ + + A + I +++ Sbjct: 358 --------LW-------TDLGDGERIGGYVADNEHDE-------ANFVVEQIDDLVDN-- 393 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 DI V+ R + I + + + I+D+ Sbjct: 394 -------HGYSYSDIAVMYRTNSASRAIEDVL----VRSGLPYKVVGGTRFYERREIRDI 442 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN----- 475 +A + I + D ++ ++ +P + I ++ + + + A Sbjct: 443 VAYLKVIDNPNDTVALRRIINTPRRGIGDRAIAQVTVHTEAQGIGFADALVDAAQGRVPL 502 Query: 476 ---CGISKFQHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFIS 519 G + ++ + L A+ +L + + Sbjct: 503 LSGRGKNAIAGFLELMEALRAEAEASELKASDGSGLDVRDLGRIVGTVLDMTGYKAELEK 562 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN----------------------SYSSLQELISEL 554 + +D L+E ++ Q S+Q + + Sbjct: 563 SNDPQDGTRLDNLNELISVGHEFSQEAANQRAYIEWSEAEQQLAEGEAPVGSIQAFLERV 622 Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + N V +MT+HTAKGLE PVVFL F H Sbjct: 623 SLVADADQIPVDQ-QNMVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRALGDP------- 674 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 E RL YVG+TRA +L + + S Sbjct: 675 ---------------------------RELNEERRLAYVGITRAKQRLFLSRAITRSGWG 707 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 + + + + + + + W Sbjct: 708 QPVNNPPSRFLSEVPDELVEWIREEPSWGGSSSAWNG 744 >gi|254362319|ref|ZP_04978431.1| DNA helicase II [Mannheimia haemolytica PHL213] gi|153093899|gb|EDN74827.1| DNA helicase II [Mannheimia haemolytica PHL213] Length = 732 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 111/580 (19%), Positives = 203/580 (35%), Gaps = 117/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L K + I + Q ILIDE QDT+ I Sbjct: 176 EIYQIYQDACDRAGLLDFAELLIRAYELFKT---KSTILQRYQQRFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L D + VGD+ QSIY + GA+ + + R Sbjct: 233 QYDLIRLLAGDV----------GKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL+ +++ + +N G + LW Sbjct: 278 ---AQTIRLEQNYRSTGNILSCANELIANNDNRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + F+ L + AR +A I + Sbjct: 314 -------TDSGDGEPVDIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --AECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P + + + R T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQEEQLSGRATSSLLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I+ L + S + ++ + + G + I+ L+E + T + + Sbjct: 466 VELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFVK 525 Query: 542 -NSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L +L + L S + + V +MT+H+AKGLE P VF+V +F Sbjct: 526 PDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 585 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + +E RL YVG+TRA Sbjct: 586 SGMSFD-----------------------------------EGRLQEERRLAYVGITRAK 610 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L I + K + + + R +++ Sbjct: 611 KKLTISYAESRRLYGKEERHVPSRFIAELPEEHIREVRLR 650 >gi|259909490|ref|YP_002649846.1| exonuclease V subunit beta [Erwinia pyrifoliae Ep1/96] gi|224965112|emb|CAX56644.1| Exodeoxyribonuclease V beta chain [Erwinia pyrifoliae Ep1/96] gi|283479564|emb|CAY75480.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Erwinia pyrifoliae DSM 12163] Length = 1178 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 136/968 (14%), Positives = 311/968 (32%), Gaps = 143/968 (14%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + + K W I+ + + + + +Q + + + Sbjct: 228 ARISMLKQAWLAAGNLQQVIDASGVDRRSYNSKHLPNWLEKISLWAQAETQDYQLPKDLE 287 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 F + + T++ L +++ E + +RD + + + Sbjct: 288 RFGQRILLEK----TKKGEPPRHPLFDQIDAFLAEPLSLRDLVIARALQQ-----VRFVT 338 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 ++ K+ + L F+DL+ + L++ + I Q LIDE QDT Sbjct: 339 ------QQEKRLHGQLGFDDLLGRFDFALQQPG-GEALASAIRQRYPVALIDEFQDTDPQ 391 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + R+L + L +GD KQ+IY+F GA+ ++ + T Sbjct: 392 QYRIFRTLYR--------RQADSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT-- 441 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 L ++RS+ ++ V+++F +N +E + + G +VQ Sbjct: 442 --------LETNWRSSPAMVNAVNQLFLRQKNPFLFNEIPFINVNPAAPNHGLNFSVQ-- 491 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNG 366 + P + W + + +AR+ A I + I + G Sbjct: 492 --------GKVQPALQFWLQPGNGVGVSDYQQFMARQCAAEICRWLTAGQQGEALIGNTG 543 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 K+ +QA DI VLVR R + ++ L SV ++R + ++++ L + Sbjct: 544 KQSPVQASDITVLVRSRSEAAVVREALYAL---AIPSVYLSNRDSVFTTPEAREMLWLLQ 600 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486 +L+ E + L + LF + + + + + + + + V+ Sbjct: 601 AVLAPEQERVLRSALATSLFGTDALALDALSQDERAWDALVDEFVDYRQRWLQ--RGVLP 658 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543 + EL+ +L + G ++ + E L L +E Sbjct: 659 MLRELMMKR------QIAENLLASDNGERRLTDLL------HVGELLQEASATLDSEHAL 706 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L + + + + + ++ + V+I+T+H +KGL+ P+V+L + Sbjct: 707 VRWLAQQVEQPDGQSSVQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN-------- 758 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ + + I+ ++ E RLLYV +TR+ Sbjct: 759 -----FREADNGVYHDRQTFTALLDLQQSEESIELAEQERLAEDLRLLYVALTRSVFHCS 813 Query: 664 ICKHS--NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-E 720 + + +K+ N + E L ++ A + Sbjct: 814 VGIAPLIKGARKKEGNSDLHCSALGYLVQQGEPADASGLLAALQALNGDAIALMRPAEAD 873 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKN-------------DINEPYILNPSTIDTKGK 767 TP + ++T Q++ + +P+ L + + L+ Sbjct: 874 ATPWQAQQTEPQILSSRTLPRSLRDNWRVTSYSGLQQHGHSIALELLPRLDVDAAGEASN 933 Query: 768 TNLES--LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + + + G +H L + + + +++ + + Sbjct: 934 EPVPQLTPHTFPRGAGPGTFLHGLFETLEFTTPLDEEWLAQQL---SSQGLGDEWQPVMR 990 Query: 826 LSITRLLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS---------- 865 + R+L P+ + + +E + +S + D ++ Sbjct: 991 DWVERILHTPLNETGVSLYQLPAQARKAELQFYLPISRLLTAEALDRVVRQDPLSQPCPP 1050 Query: 866 -----------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905 G ID + Q ++ +YK++ + + Q Sbjct: 1051 LDFHQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTREAMAQAMQAHRYDLQYQ 1110 Query: 906 IYEKILKD 913 +Y L Sbjct: 1111 LYTLALHR 1118 >gi|254230196|ref|ZP_04923589.1| DNA helicase II [Vibrio sp. Ex25] gi|262392860|ref|YP_003284714.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25] gi|151937281|gb|EDN56146.1| DNA helicase II [Vibrio sp. Ex25] gi|262336454|gb|ACY50249.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25] Length = 724 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 97/549 (17%), Positives = 180/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 230 QYAWLRMMAG----------PDCHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 311 -------TDGNVGEPISVYSAYNELDE-------ARFAVNKIKEWQENGGAL-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + I+D ++ R + ++ Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIRDALSYLRLMANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P + + I R T++E + Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRRAARDRGCTMWEASLAMLDEQVLTGRAAGALSRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I L H+ ++ + G + I+ L+E + T + E+ Sbjct: 463 VELITALEDDTLEMPLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 523 PEEAEEMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHS 668 +L I Sbjct: 609 QKLYITYAE 617 >gi|325137063|gb|EGC59659.1| DNA helicase II [Neisseria meningitidis M0579] gi|325202934|gb|ADY98388.1| DNA helicase II [Neisseria meningitidis M01-240149] gi|325207267|gb|ADZ02719.1| DNA helicase II [Neisseria meningitidis NZ-05/33] Length = 735 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 187/550 (34%), Gaps = 120/550 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHINAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELI 492 D + + ++ P I + T + T+++ A +K ++ I L Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACN-AGAKATKVAAFVRLIEALR 465 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQ 548 + + IL + + ++ G + +D LDE +N + E +++ L Sbjct: 466 NQVGQMPLPEIIVGILKDSGLTEHYKTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILP 525 Query: 549 E---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E +++ L + V++MTVH AKGLE VFL F Sbjct: 526 ENISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRF 585 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++ EE RL+YV +TRA Sbjct: 586 PSEMSL----------------------------------AERGGLEEERRLMYVAITRA 611 Query: 659 SDQLIICKHS 668 +L I Sbjct: 612 RKRLYITMAQ 621 >gi|187477915|ref|YP_785939.1| DNA helicase II [Bordetella avium 197N] gi|115422501|emb|CAJ49026.1| DNA helicase II [Bordetella avium 197N] Length = 750 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 103/664 (15%), Positives = 212/664 (31%), Gaps = 134/664 (20%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + + K ++ + + Q ++ Sbjct: 94 LRAHHRDAGLPQAFQILDTA---DQLAAIKRLLKAQGIDDEKYPP---RDVQRFINGSKE 147 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ A + YE ++ V+DF +L++ +LL + A +R Sbjct: 148 DGLRPAEVEAWDAHRRKLVEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 204 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+ +Q++ +R L +FAVGD+ QSIY+F GA Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGAAIFAVGDDDQSIYAFRGA 254 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R + +I L ++RS IL + + G + + Sbjct: 255 NVGNMADFERDYAQ--------GRVIRLEQNYRSFGHILDAANALIGHNSGRLGKNLWTD 306 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G +L + ++ S + A+ + Sbjct: 307 Q------------GEGELIRII-----------------------EQPSDGMEAQWVVDE 331 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++I +I VL R + ++ ++ Sbjct: 332 IRSLINEGRAR----------SEIAVLYRSNAQSRVLEHAL----FSAGVAYKVYGGLRF 377 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQ 471 + IK +A R I + +DD S + ++ P + + ++ +++ + Sbjct: 378 FERQEIKHALAYLRLIANPDDDTSLMRVVNFPTRGIGARTLELLADAASSSQTSLFGAVA 437 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 + G + + I L + + I+ + + + R G E ++ L+ Sbjct: 438 RVPGKGGANLAQFAQLIGRLAAETRDLPLPEMVGHIIEESGLKAHYQAEREGAERLENLN 497 Query: 531 EFLNFTLRNEQNS---------------------YSSLQELISELEQYPPTI-KRAHSAN 568 E + S+ L + L A Sbjct: 498 ELVTAAAVFAAEENFDSLPAGVALQTDAAEGEPPVPSMSPLAAFLSHAALEAGDNQAQAG 557 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V++MTVH AKGLE VF+ +F H++ Sbjct: 558 QDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENSILEP--------------------- 596 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 + EE RL+YV +TRA ++L + + ++ + + Sbjct: 597 -------------AGLEEERRLMYVAITRARERLYLTLAQSRMLHGQTRYAMRSRFLEEI 643 Query: 689 FHND 692 + Sbjct: 644 PESH 647 >gi|254470528|ref|ZP_05083932.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062] gi|211960839|gb|EEA96035.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062] Length = 812 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 96/547 (17%), Positives = 178/547 (32%), Gaps = 117/547 (21%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L + L Y+E DF DL+++ + K+ D + ++L+DE QDT Sbjct: 211 LGRKLYQTYQERLSILNACDFGDLLLHCITIFKEHDD---VLKSFQSRFRYMLVDEYQDT 267 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 ++ Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 268 NIAQYMWLRLLAQ----------GNSNVACVGDDDQSIYGWRGAEVDNILRFEQDFP--- 314 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +++ L ++RST+ IL+ + + + G + + Sbjct: 315 -----GATVVRLERNYRSTSHILSAASHLIAHNQGRLGKTLFTDQV-------------- 355 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + + S +DS + AR I I + Sbjct: 356 -----------GSEDEDKVQVASAWDSQEE-------ARSIGDEIEALQNHGHSL----- 392 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 ++ +LVR L ++ + + I+D +A R + Sbjct: 393 -----NEMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDALAYFRCV 443 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKF 481 + DDL+F ++ +P E + + R + + + Sbjct: 444 MQPSDDLAFERIVNTPKRGLGEATLKIVHAYARERAIPLMIAAGELVQTNELRPKARAAL 503 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 V+ + + S + +IL Q + E +D L E + Sbjct: 504 ADVLGMFENWRNQVETMSHTELAEIILDESGYTQMWRQDRSAEAPGRLDNLKELIRSMEE 563 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E + LE + + + V IMT+H+AKGLE VFL VF Sbjct: 564 FES--------MAGFLEHISLVMDKDSDVEEDAVSIMTLHSAKGLEFDTVFLPGWEEGVF 615 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 ++ + ++ EE RL YVG+TR Sbjct: 616 PNQR--------------------------------ALDETGQAGLEEERRLAYVGLTRG 643 Query: 659 SDQLIIC 665 ++ + Sbjct: 644 RKRVKVW 650 >gi|95929583|ref|ZP_01312325.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95134280|gb|EAT15937.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 1101 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 146/953 (15%), Positives = 286/953 (30%), Gaps = 129/953 (13%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER---FSLL 69 E + + +P ++ + E + LQ + E + L Sbjct: 226 AEHLAEAARAVPLACRDEVMALGRFAAEQLADEQRPISHLLQAECFPEADLEALPVWRGL 285 Query: 70 SSFFLTQKFTPQKNI-----ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY------- 117 + LT + +K +K+++ + + Sbjct: 286 AELLLTSEGQWRKACNKNIGFPAGKKDPFASMKQRMLELLKRVSDEDCQALAQVVSLPSG 345 Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + +++ A L + L A + +DF ++ + L + Sbjct: 346 GYSDQQWQTLDALLDVLPALVAQLWWVFRHCAEVDFTEVALKARQALVDSGQPTEQLLAL 405 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 D++I+HIL+DE QDTS +Q++++ +L + RTLF VGD QSIY F AE Sbjct: 406 DRQIDHILVDEFQDTSWLQFDLLSTLVSGW-----QPDDGRTLFVVGDPMQSIYRFREAE 460 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 L+ + ++L +FRS I+ ++ F Sbjct: 461 VGLFLQAGQQ-----GIGPVSLQSLQLSANFRSQQGIVDAINGWF--------------- 500 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 + G V + + + + + A + I Sbjct: 501 PDIFPAQEDAGRGAVCYFPAQPVLNRGMGEAVSVYPDYHNNPDEE-------AAEVVELI 553 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + A+ I VLVR R I + + I + D +LT Sbjct: 554 KVLRDRHP-----------AESIAVLVRSRTHLKSILPHLQ----KHAIGYMAQDIDVLT 598 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR----HETETVYEY 469 + DL AL + +L DDLS++ +L++P + D++ + + T Sbjct: 599 QCPVVSDLTALTKALLHGGDDLSWLTVLRAPWCGLTLDELIHFAPSKTTTVAQLATTEAV 658 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529 + + VI + E G + + ++V + Sbjct: 659 LSALPPASQQRVAAVIAIVVEYRRRRGRVPLRQLVESCWRDLDGPCYYGGQAVHDV-EPF 717 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 L+ + L + E + + V++MT+H AKGLE V Sbjct: 718 WALLDRL-----DYGGDLLAIEQLDESLQQLFATPVVSGESAVQVMTIHKAKGLEFDHVV 772 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L G + H + + PI P + I L + ++ E R Sbjct: 773 LPSLGRKPRRSDHPLMRWLEHPTHGLLMAPITAP-GDVADPIYGLLGQLEQRKEDYEVAR 831 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 LLYV +TRA L + + + + ++ + + E Sbjct: 832 LLYVALTRARRTLHLFGQAALARDGQAQPASGSLLATLWPAIGHHFVPDDSQTLQGDSEQ 891 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 A + + L Sbjct: 892 DARRYG--------------------------------PPLLRRAEPLYAVQPKRAEADG 919 Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEH----KRKNFITSYCTKNAKLWPAKE----- 820 + S + G ++H + P+ + ++ + +L E Sbjct: 920 VTPWRSGTIASHVGTLVHHWFERFALDPQAIENYHQVEQRSALIGRQVRLLGLAEHHIEP 979 Query: 821 -YKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877 + I +L + ++ +E ++SG++ ++ ID+ I + Sbjct: 980 MVGRINQLIDTMLSSDRGRWILAPHPQGRNEYALSGEL----DGQFVNVVIDRTFIHETE 1035 Query: 878 IFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 +I +YKT +E + QL Y ++L P C L + Sbjct: 1036 RWIIDYKTSVPGRLSMEEFYQQQAEIYADQLHRYAQLLGRLDPEHRCRCALYF 1088 >gi|218130915|ref|ZP_03459719.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697] gi|217987259|gb|EEC53590.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697] Length = 760 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 94/620 (15%), Positives = 188/620 (30%), Gaps = 121/620 (19%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL+ T L + + + + +IL+D Sbjct: 169 AAKMPAIRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPD---VLARYQSQFRYILVD 225 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ L ++ R + VGD+ QSIYSF GA+ +L ++ Sbjct: 226 EYQDTNFAQHSIVLQLAKE----------HRHVCVVGDDAQSIYSFRGADIDNILYFTKV 275 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I++ + + + S Sbjct: 276 YP--------GTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIRKEVFS------------ 315 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + + I+ + Sbjct: 316 ---------------EKEKGEAIGVYQAYSDVEEGDI--------VINKIAELRRQG--- 349 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R + IKD +A Sbjct: 350 ------NYAYSDFAILYRTNAQSRVFEEAMR----KRSMPYRIYGGLSFYQRKEIKDTIA 399 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R ++ D+ +F ++ P + + KI +++ + + Sbjct: 400 YFRLTVNPNDEEAFKRIINYPARGIGDTTVSKITAAATDHNVSLWTVLCEPLTYGVNINK 459 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 ++K Q + I + ++ T I+ E + ++E Sbjct: 460 GTVTKLQSFRDLMTGFIESVSEKNAYELGTEIIRQSGIIGDVCQDNSPENLSRKENIEEL 519 Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 N E N+ +L + +SE+ + ++ +MTVH+AKGLE Sbjct: 520 ANGMSDFCAQRQEEGNNNITLGDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFR 578 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA D + + K + + D ++ + Sbjct: 605 ERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGSPSRFLKDIDVRFLKLPQDAGLGRRVD 664 Query: 707 DEWIAYEWSTHHPENTPLER 726 + ++ T P Sbjct: 665 ESAASFRSRTRQEVIAPTVP 684 >gi|57234053|ref|YP_181909.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195] gi|57224501|gb|AAW39558.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195] Length = 738 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 183/551 (33%), Gaps = 118/551 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + YE+ K+N LDF+DL++ L K+ + + + H+++DE QD Sbjct: 167 EVVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQHPE---VLARYQERYLHVMVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+L+Q+E+++ L+ + + + VGD QSIYS+ A+ + V + Sbjct: 224 TNLVQYELVKMLSAKY----------KNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST +IL V + + +S Sbjct: 270 ----NPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + Q + F+ + A+ + I + Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 DI +L R + + Y + +KD++A R Sbjct: 342 YEKFSPGDIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480 + + +D +S ++ P + + R + ++YE + ++ K Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLGQFAREQDISLYESLVNLSDENTPKPPIPSR 457 Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535 + L+ A+ + +L R+ S G E D + E Sbjct: 458 GLKPLTDFGLLLKSLVADARNLPLLNLLDRLLEGINYREFLFASEDGEERWDNILELRTV 517 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + ++ + L LE + V ++T+H AKGLE PVVF+V Sbjct: 518 AQQYQEIVPP--EGLSVFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 V H + +E RL YVG Sbjct: 576 EGVLPHSRSFDDP----------------------------------AQMQEERRLCYVG 601 Query: 655 MTRASDQLIIC 665 +TRA +L + Sbjct: 602 VTRARKRLYLV 612 >gi|150006034|ref|YP_001300778.1| putative helicase [Bacteroides vulgatus ATCC 8482] gi|149934458|gb|ABR41156.1| putative helicase [Bacteroides vulgatus ATCC 8482] Length = 796 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 109/799 (13%), Positives = 232/799 (29%), Gaps = 138/799 (17%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFL 74 + + P ++ NK E + +A+ L + + Sbjct: 45 LERGYTPWSILALTFTNKAAREMKERIARQVGDQARYLWMGTFHSIFSRILRCEAQAVGF 104 Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKK------SQDEFIKIRDRFNTYKMFKSTLASLT 128 T FT + ++ + K + K Q ++ + S Sbjct: 105 TSNFTIYDSSDSKSLIKSIVKEMQLDDKTYKPGVIQARISNAKNHLVFPDAYVSNAELYQ 164 Query: 129 --------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + + Y E +++ +DF+DL++ T L + I K ++ ++ Sbjct: 165 YDLNAKVPATRDIYRRYWERCRQSDAMDFDDLLVYTYMLFRDHPE---ICRKYAEQFRYV 221 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ Q ++ LT++ + + VGD+ QSIYSF GA +L+ Sbjct: 222 LVDEYQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKF 271 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + + +L ++RST I+ + + S Sbjct: 272 TQLY--------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIRKEVFS--------- 314 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + + + + + +A I + + Sbjct: 315 -------------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSRE 348 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 D +L R + + R + IKD Sbjct: 349 H---------YSYNDFAILYRTNAQSRIFEEALR----KRALPYKIYGGLSFYQRKEIKD 395 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQK 472 +++ R ++ D+ +F +L P + + K I +++ Y Sbjct: 396 VISYFRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLN 455 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 +K Q + + I + ++ +I+ + E + + Sbjct: 456 INKGMHTKLQGFRELVESFIVEVPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENI 515 Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 +E +N E N L + +SE+ + ++ +MT+H+AKGL Sbjct: 516 EELINGMHDFCATREEEGNENILLTDFLSEVSLLTDQD-NEKEGDAEKITLMTIHSAKGL 574 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E VF+V +F + Sbjct: 575 EFKNVFVVGMEENLFPSALSLNSY----------------------------------KE 600 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 EE RL YV +TRA + + + K + + D + ++ + + Sbjct: 601 LEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMAR 660 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPST 761 + + + L E + P + + PS Sbjct: 661 RIDERASRFCREQNERAARSLFDEPASQSSYGRSSSNISGGQKTFLVGERPKVEIIRPSI 720 Query: 762 IDTKGKTNLESLLSDNQTF 780 K E++ + Sbjct: 721 PRNLTKVGPETVSKPSAAR 739 >gi|328471315|gb|EGF42214.1| DNA-dependent helicase II [Vibrio parahaemolyticus 10329] Length = 723 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 102/549 (18%), Positives = 181/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + R Sbjct: 229 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTREFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 273 --SVTTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 310 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R + ++ Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALAYMRLMANR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R T++E A Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ I L H+ ++ + G + I+ L+E + T + E+ Sbjct: 462 IELITALEDDTLEMPLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 PEEAEEMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 +L I Sbjct: 608 QKLYITYAE 616 >gi|313898067|ref|ZP_07831606.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2] gi|312957095|gb|EFR38724.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2] Length = 763 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 101/630 (16%), Positives = 200/630 (31%), Gaps = 121/630 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + YE+ K+ LDF+DL+I + +LK ++ +R K + ++ +DE QD Sbjct: 167 QIKADVYEFYEKRLKEMYALDFDDLLIFAHRILKSKEE---VRAKWQRRFTYLHVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 +Q+ +I+ L ++ L VGD Q+IY++ GA+ ++ +R Sbjct: 224 VDNLQYAIIKLLVKE----------GSYLCVVGDPDQTIYTWRGAQVDIIMNFERDFP-- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST IL + + N Sbjct: 272 ------DSHTVVLNENYRSTQQILNGANALIKNNRNRIDKDLF----------------- 308 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + +++ D+ +A I + Sbjct: 309 ----------TRVESEDKIIHFSAMDDANEPV--------WVASKIMTLH---------- 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +DI +L R + + + D+ I D IKD ++ R Sbjct: 341 HDHVDYRDIAILYRSNFLSRGLEKVL----LDFHIPYRIYGGVRFYDRAEIKDALSYLRL 396 Query: 428 ILSQED---------DLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCG 477 + D +L+ ++ SP + I Q + ET +Y+ + ++ Sbjct: 397 LA-PFDEQDPKALYKNLAVKRVINSPKRGIGAKTLETIELQANHDETNMYDVLCEYEIGK 455 Query: 478 ISK---FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 Q + I E + S +L E ++ + E + Sbjct: 456 GKARANIQAFVAMIEECRMLVDTISIDQLLEKVLEDSGYLDMLREDKEIERLENIKELIG 515 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + L L++ + N + V++MT+H AKGLE VF+ Sbjct: 516 DISDYVEAHPEG--TLNEYLQEISLYSDKEEQENGDFVQLMTIHAAKGLEFDNVFVYSLC 573 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F ++ P EE RL YV Sbjct: 574 EGIFPNERSVGEGGQP--------------------------------ALEEERRLAYVA 601 Query: 655 MTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 TRA QL + +S ++ K+ R ++ D + + ++ ++ Sbjct: 602 FTRAKKQLFLSDSYGYSYVLDKIKTTSRFIKELPEDCIEDVGAKPRNTFSSDVDTFSGSD 661 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + +E + E+K+ Sbjct: 662 FLSMHSSDMVQHRPQESSGYARQAERKLSD 691 >gi|81429165|ref|YP_396166.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610808|emb|CAI55859.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K] Length = 749 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 100/630 (15%), Positives = 192/630 (30%), Gaps = 103/630 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V + ++ L Sbjct: 30 GAGSGKTRVLTHRVAYLIEEKHVLPWRILAITFTNKAAREMRERVGNLLGEGAQDVWVST 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE----------FIKIRDRFN 115 F L L + ++ + P + L + I + Sbjct: 90 FHALCVRIL--RREIEQIGYNRAFTIADPSEQLTLMRHVCRDLNIDTKKYEPKAILGTIS 147 Query: 116 TYKMFKSTLASLT---------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 K T A +A Y++ +N LDF+DLI+ T L ++ Sbjct: 148 KAKNALQTPADYQGLANGPFEKMAAKCYTEYQKRLHQNQALDFDDLIMQTIRLFREN--- 204 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 ++ +I +DE QDT+ Q+ ++ L E + + L VGD QSI Sbjct: 205 KETLAHYQEKFQYIHVDEYQDTNEAQYTLVNMLAEKY----------QNLCVVGDADQSI 254 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ ++ + + L ++RST IL + V + + Sbjct: 255 YGWRGADISNIMNFEHDYP--------DAKSVMLEQNYRSTKTILEAANGVINRNTFRKP 306 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 +LW Q ++ + Sbjct: 307 K---------------------ELW-------TQNEEGQPITYYRGQSERDESL------ 332 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I + + + D VL R + I + Sbjct: 333 -FVITKIQEEMQKNHR---------KYGDFAVLYRTNAQSRTIEEAF----VKANMPYKM 378 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465 D IKD++A R +++ D +SF ++ SP + K+ + Sbjct: 379 VGGHKFYDRKEIKDILAYLRLVVNAADSMSFERIVNSPKRGIGPGTLEKLGQFADDHQWS 438 Query: 466 VYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + E Q I I +L + +F + D +L ++ Sbjct: 439 LLEAAQNAELSTIPARSRNTLIDFGNVIGDLAKMREFLNVTDLTEQLLDKTGYKKALEVE 498 Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVR 573 E ++ ++E L+ T + +++ ++ + L + +EV Sbjct: 499 NTLESQTRLENIEELLSVTKQFDEHYEPEEEDSDLFVDFLAELSLVSDLDSVEEEASEVT 558 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 +MT+H AKGLE PVVFL+ +F Sbjct: 559 MMTLHAAKGLEFPVVFLMGMEEGIFPLSRA 588 >gi|313618386|gb|EFR90413.1| ATP-dependent DNA helicase PcrA [Listeria innocua FSL S4-378] Length = 543 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 100/563 (17%), Positives = 185/563 (32%), Gaps = 115/563 (20%) Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 DF+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 1 DFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF---- 53 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 + L VGD QSIY + GA+ ++ ++ I L ++RST Sbjct: 54 ------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYP--------SAKTILLEENYRST 99 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 IL ++V N + + LW S ++ Sbjct: 100 KRILEAANRVIENNGNRKPKN---------------------LW-------TSNAEGKKI 131 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 + + A + I + + D +L R + Sbjct: 132 FYHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTNAQSR 175 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 ++ ++ D IKD++A R I + EDD+S ++ P Sbjct: 176 VMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINVPKRG 231 Query: 448 FSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPH 501 + K+ +++E + + + + F S Sbjct: 232 VGPGTLEKLNNVAAAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDFLSVT 291 Query: 502 DFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISELEQY 557 + IL R + E + +DEFL+ T E+ + +L +++L Sbjct: 292 ELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLLAFLTDLALV 351 Query: 558 PPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 K + + V +MT+H+AKGLE PVVFLV +F H Sbjct: 352 ADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS-------------- 397 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675 ++ EE RL YVG+TRA ++L + + + Sbjct: 398 --------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRMLYGR 437 Query: 676 SNQRTWYDMVYDSFHNDERVKKI 698 + + + + + Sbjct: 438 PSSNQESRFIGEIPRDLLELGNE 460 >gi|153839103|ref|ZP_01991770.1| DNA helicase II [Vibrio parahaemolyticus AQ3810] gi|149747399|gb|EDM58363.1| DNA helicase II [Vibrio parahaemolyticus AQ3810] Length = 723 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 102/549 (18%), Positives = 181/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + R Sbjct: 229 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTREFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 273 --SVTTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 310 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R + ++ Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALAYMRLMANR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R T++E A Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ I L H+ ++ + G + I+ L+E + T + E+ Sbjct: 462 IELITALEDDTLEMPLHEQTDHVIKYSGLFTMYEQEKGEKSKARIENLEELVTATRQFEK 521 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 PEEAEEMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 +L I Sbjct: 608 QKLYITYAE 616 >gi|52425423|ref|YP_088560.1| DNA-dependent helicase II [Mannheimia succiniciproducens MBEL55E] gi|52307475|gb|AAU37975.1| UvrD protein [Mannheimia succiniciproducens MBEL55E] Length = 727 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 191/551 (34%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF ++++ +L K+ V I + Q IL+DE QDT+ IQ Sbjct: 178 IYRIYQDTCDRAGLVDFAEILLRAYELFLKKPV---ILQRYRQRFQQILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + + VGD+ QSIY + GA+ + + R K Sbjct: 235 YAWIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLDDFHK------ 278 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL +++ S N G LW Sbjct: 279 --AKTIRLEQNYRSTGNILQSANQLISNNSNRLGK---------------------DLW- 314 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + A ++ I + Sbjct: 315 ------TEGDKGEPVGIYAAFNELDE-------ALFVSSQIKIWWEDGG----------E 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 LNDCAVLYRSNSQSRVIEEAL----IRAQIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 407 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ Q K A + Sbjct: 408 DDAAFERVINTPTRGIGDRTLDVLRNLTREREITLWQATQLAIGENKLAGRSATALLRFC 467 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L + ++ + + G + I+ L+E ++ T + Sbjct: 468 ELINSLAQETEEMPLFAQTDFVIKHSGLYEMYKQEKGEKGEVRIENLEELVSATREFIKP 527 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + +L + L ++ H + V++MT+H+AKGLE P VF+V +F Sbjct: 528 DDAEDMSDLSAFLTHASLEAGEEQASPHQSCVQMMTLHSAKGLEFPRVFMVGVEEGLFPS 587 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + EE RL YVG+TRA Sbjct: 588 ----------------------------------FMSLEEPGRLEEERRLAYVGITRAKQ 613 Query: 661 QLIICKHSNTS 671 +L IC + Sbjct: 614 KLTICYAESRR 624 >gi|282855099|ref|ZP_06264431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139] gi|282581687|gb|EFB87072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139] Length = 810 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 99/633 (15%), Positives = 194/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYAEYQRRLRAANALDFDDLIMYTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVEQGKRADEIASSILKESGYITELENSKDPQDETRLENLIELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLESSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPERLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|238018401|ref|ZP_04598827.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748] gi|237864872|gb|EEP66162.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748] Length = 1266 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 120/774 (15%), Positives = 242/774 (31%), Gaps = 72/774 (9%) Query: 1 LKNRFG-------LSLNESY--ELIYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKA 50 L+ ++ +++ + ++ + + + + ++ G Sbjct: 201 LRKALAPYKEAMEINPSDTLWGQYMWDQHIAVIDRIRERLERMEQILLDPVGPHKWQNIY 260 Query: 51 QTLQQASQTQCIEERFSLLSSF------FLTQK---FTPQKNIITQEINKKSPDL----K 97 A + + + F+ + + + + + L K Sbjct: 261 DNQLAALGMLSNAQTWDDMGEACKHIDTFIKDQFRMGSKEAQSYDPILVAEFKSLGAQNK 320 Query: 98 EKLKKSQDEFIKIRDRFNTYK---MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 + LK Q + + + + + L + Y + K++ ++DF DL Sbjct: 321 DDLKAMQASVFTVPEATLQEQFKAQYPIIEGLVELTIAFHQAYRDMKQEQGIMDFSDLEH 380 Query: 155 NTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 LL + + + ++ I++DE QDT+ +Q +I + Sbjct: 381 LCLALLVEPGTEDDPQPSDVAKELQDTFKEIMVDEYQDTNGVQETIINLI---------- 430 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 S F VGD KQ+IYSF A+ + + I+L +FRS + Sbjct: 431 -SRVDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG----GNDAVERRIDLAKNFRSHEN 485 Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR-------IGQVGTVQLWEQVVSQHDSQC 322 IL + +F + + T R G V+L VS+ Sbjct: 486 ILAATNFLFYQIMTEEAAELNYTEAESLIPGRIVENAPEDWVGGDVELQLLDVSKDTLGA 545 Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLV 380 + E D + I I + +G R I+ +D +L Sbjct: 546 SESDE------DEGDDPENNERELDFIIQKIKEIHAAKKQVQNPDGTFRQIEWRDFAILR 599 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + I V N+R + I+ L+AL I + E DL + Sbjct: 600 RSLAGWGTRAV---EVMRQAGIPAVVNERDGYFEAQEIQLLLALLSIIDNPEQDLPMAAV 656 Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 L S L +++ + E + I ++ +++ Sbjct: 657 LHSGLVGLDANELGALRLS-GEGSLWSLMPAYAEEAQDERLLSFIGHMERWRTLSRRHGV 715 Query: 501 HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 D I ++ G + + E + + L + +E Sbjct: 716 TDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDRAKGYEASGFRGLFRFLRFVESLRD 775 Query: 560 TIKRAH-----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + + S N VR+MT+H +KGLE PVVFL + ++ I + Sbjct: 776 SNQDMPLANVVSEADNVVRVMTIHKSKGLEFPVVFLSGMQKKFNMMDLRSELLIDKNAGL 835 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674 + + + + + E R+LYV +TRA D+L + Sbjct: 836 GLKGYFTDIRVSFPTMPWFYVKDVKEAALKAEEQRILYVALTRARDKLFMTGFVKGFKNS 895 Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD-EWIAYEWSTHHPENTPLERE 727 K T +++ ++ + + + N +W+ ++ H PL Sbjct: 896 KGGLSTLGELIKNAASVEGQQLPTDIITQANTYLDWLIMGFARHLDGGNPLRVA 949 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 52/171 (30%), Gaps = 13/171 (7%) Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 L+S G ++H+ +Q + + + +E L Sbjct: 1088 KPQALQSEEDVLTGAQWGTLMHEAMQWLPLAEYTQDSLTKELDALVTKGTFTEEERNLLS 1147 Query: 826 L-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQ 875 S+ + + + + + E+ S +++ + G ID Sbjct: 1148 DTSLYKFFNSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEED 1207 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + +YKT E + + Q+ +Y++ L+ + IY Sbjct: 1208 GEWVLVDYKTDRVKSG--EDLIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1255 >gi|312898542|ref|ZP_07757932.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359] gi|310620461|gb|EFQ04031.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359] Length = 738 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 102/668 (15%), Positives = 189/668 (28%), Gaps = 119/668 (17%) Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 ++ K + L + K YE+ K N +D Sbjct: 136 LDDKQFPPRTVLGTVSSAKNALLRADEFAKSADDFYTLK--VSEAYTLYEKKLKDNNAVD 193 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F+DL++ IR K + +IL+DE QDT+ Q+ + + L + Sbjct: 194 FDDLLLLAVK---LLQERQDIREKYQERFRYILVDEYQDTNKAQYLLTQILAAKW----- 245 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 R + VGD QSIY++ GA+ + ++ R + ++L ++RST Sbjct: 246 -----RNICVVGDADQSIYAWRGADIQNIMDFMRDYP--------DGTNVKLEQNYRSTK 292 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 +L + V E + + H+ Sbjct: 293 TVLQAANAVIDNNEARLKKALWTENPQGHKIVHYHA------------------------ 328 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + A IA I++ + +L R + + Sbjct: 329 -----------QTEHDEADYIA---------GVIYNRHSIENEPYGHMAILFRTNSQSRV 368 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 + Y I D IKD++A R + + ED LS V +L P + Sbjct: 369 LEEKL----MRYGIPYTMVGGTKFYDRKEIKDVIAYLRVLYNPEDSLSLVRILNVPKRSI 424 Query: 449 SEDDIFKI-CTQRHETETVYEY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 I + ++++ + + I L+ Sbjct: 425 GATSIEHLTDYAEENGISLFDALSTTEDLPVTKRVKTALEDFAALIFSLLGEVSKTDVPT 484 Query: 503 FFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557 ++ G + + + +N +++ L LE Sbjct: 485 LIERVVKETGYGDMLDKEAAQDPQGESRKENVGQLINAAQEYMRDNPDG--NLQDFLENV 542 Query: 558 PPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + V +MT+H AKGLE PVVFL +F H Sbjct: 543 ALVSDVDEFEGSDSKVTLMTLHAAKGLEFPVVFLAGLDEGLFPHSRTL------------ 590 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + + EE RL YVG+TRA L + S + + Sbjct: 591 ----------------------MDSAQIEEERRLAYVGITRAEQYLYVTNASTRTMYGRV 628 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + + + + + + + + + + + + D Sbjct: 629 SAYLPSRFLNEIPEELMEEYRRRAEMPRGERQVPGEQRVSILTKAVTSQLPKAHHVDGDW 688 Query: 737 QKIPKKLF 744 Q K Sbjct: 689 QAGDKVRH 696 >gi|254881794|ref|ZP_05254504.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641188|ref|ZP_07995889.1| helicase [Bacteroides sp. 3_1_40A] gi|254834587|gb|EET14896.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387162|gb|EFV68040.1| helicase [Bacteroides sp. 3_1_40A] Length = 796 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 109/799 (13%), Positives = 232/799 (29%), Gaps = 138/799 (17%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFL 74 + + P ++ NK E + +A+ L + + Sbjct: 45 LERGYTPWSILALTFTNKAAREMKERIARQVGDQARYLWMGTFHSIFSRILRCEAQAVGF 104 Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKK------SQDEFIKIRDRFNTYKMFKSTLASLT 128 T FT + ++ + K + K Q ++ + S Sbjct: 105 TSNFTIYDSSDSKSLIKSIVKEMQLDDKTYKPGVIQARISNAKNHLVFPDAYVSNAELYQ 164 Query: 129 --------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + + Y E +++ +DF+DL++ T L + I K ++ ++ Sbjct: 165 YDLNAKVPATRDIYRRYWERCRQSDAMDFDDLLVYTYMLFRDHPE---ICRKYAEQFRYV 221 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ Q ++ LT++ + + VGD+ QSIYSF GA +L+ Sbjct: 222 LVDEYQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKF 271 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 ++ + + +L ++RST I+ + + S Sbjct: 272 TQLY--------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIRKEVFS--------- 314 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 + + + + + + +A I + + Sbjct: 315 -------------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSRE 348 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 D +L R + + R + IKD Sbjct: 349 H---------YSYNDFAILYRTNAQSRIFEEALR----KRALPYKIYGGLSFYQRKEIKD 395 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQK 472 +++ R ++ D+ +F +L P + + K I +++ Y Sbjct: 396 VISYFRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLN 455 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 +K Q + + I + ++ +I+ + E + + Sbjct: 456 INKGMHTKLQGFRELVESFIVEVPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENI 515 Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 +E +N E N L + +SE+ + ++ +MT+H+AKGL Sbjct: 516 EELINGMHDFCATREEEGNENILLTDFLSEVSLLTDQD-NEKEGDAEKITLMTIHSAKGL 574 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E VF+V +F + Sbjct: 575 EFKNVFVVGMEENLFPSALSLNSY----------------------------------KE 600 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 EE RL YV +TRA + + + K + + D + ++ + + Sbjct: 601 LEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMAR 660 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPST 761 + + + L E + P + + PS Sbjct: 661 RIDERASRFCREQNERAARSLFDEPASQSSYGRSSSNISGGQKTFLVGERPKVEIIRPSI 720 Query: 762 IDTKGKTNLESLLSDNQTF 780 K E++ + Sbjct: 721 PRNLTKVGPETVSKPSAAR 739 >gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans SRS30216] gi|151359243|gb|ABS02246.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans SRS30216] Length = 773 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 104/703 (14%), Positives = 222/703 (31%), Gaps = 119/703 (16%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 ++ + + L++ P+K+ + + +LK +L + Sbjct: 138 MRTSFSIYDSADSQRLMAMVGRELDLDPKKH-APRAMAAMVSNLKNELVDE--------E 188 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 F + + + + Y++ ++ +DF+DLI++T LL+ + Sbjct: 189 TFFDRANSEGGTETERVLARVYRTYQQRLRQANAMDFDDLIMSTVHLLQ---AFPDVAEH 245 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + H+L+DE QDT+ Q+ +++ L L VGD QSIY+F GA Sbjct: 246 YRRRFRHVLVDEYQDTNHAQYVLVKELVG----TGEGPVPRGELTVVGDADQSIYAFRGA 301 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + ++ ++ + + L ++RST +ILT ++V + ++ + + Sbjct: 302 TIRNIVEFEQDYP--------DATTVLLEQNYRSTQNILTAANEVIKLNDDRRPKN---- 349 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + +Q D + A +A Sbjct: 350 -----------------LW-------TAAGAGEQIVGYVADDEHDE-------AAFVAEE 378 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + + ++ KD+ V R + + + + Sbjct: 379 VDRLHDAG---------ALKYKDVAVFYRTNAQSRSLEEVF----IRTGLPYKVVGGTRF 425 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 + +KD +A R + + +D ++ ++ P E + + + Sbjct: 426 YERREVKDAVAYLRVLDNPDDTVNLRRVINVPKRGIGERAEAALVVLADRERIGFNAALE 485 Query: 473 FANC-------GISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE 524 A+ ++ + + I +L +A+ +P +L + + + Sbjct: 486 RADEAIGLVSRSLNAIKGFAQLIADLRTLAESGAAPSVVLEAVLEQTGYLAELRASADPQ 545 Query: 525 ---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHT 579 ++ L E + E+N +L + + + + + + V +MT+HT Sbjct: 546 DESRVENLSELVAVAEEFSEENPEGTLSDFLERVSLVADADQIPVGAEDDGVVTLMTLHT 605 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFL F H Sbjct: 606 AKGLEFPVVFLTGMEDGTFPHTRSLGDP-------------------------------- 633 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 E RL YVG+TRA ++L + + + S Q + + K+ + Sbjct: 634 --DQLAEERRLAYVGLTRARERLYLSRSAVRSAWGAPQQYPPSRFLDEVPATLVDWKRGE 691 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + + + R D Sbjct: 692 SAFQDVTSTSASTRVAQRPGVRSAGSRPVIALNPGDRVTHDSF 734 >gi|296268638|ref|YP_003651270.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833] gi|296091425|gb|ADG87377.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833] Length = 786 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 110/666 (16%), Positives = 206/666 (30%), Gaps = 121/666 (18%) Query: 101 KKSQDEFIKIRDRF--NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 + + ++ + ++ Y+ + +DF+DLI+ T Sbjct: 179 RSFAAQVSAFKNELIDHETAASRAQTHLERTLAEAYRIYQTRLTEAGAMDFDDLIMQTVA 238 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE-------DFFVGKNTHS 211 L + + + + H+++DE QDT+ Q+ ++R L D V + + Sbjct: 239 LFQ---LFPEVAEHWRRRFRHVMVDEYQDTNHAQYVLVRELVGRPEVRTVDGDVVREGVA 295 Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271 P L VGD QSIY+F GA + +L +R I L ++RST IL Sbjct: 296 DPAELVVVGDADQSIYAFRGATIRNILEFERDFP--------DARTILLEQNYRSTQTIL 347 Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 + V S + + + S D P+ + + Sbjct: 348 DAANAVISRNQGRKPKNLWS---------------------------DQGPGPKIVGYVA 380 Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391 + A +A + + + I+ D+ V R + + Sbjct: 381 DNEHDE--------ALFVAQEVDRLADEE---------GIKPGDVAVFYRTNAASRVFEE 423 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + + + D +KDL+A R +++ D +S +L P E Sbjct: 424 VF----SRTGLPYRIVGGVRFFDRKEVKDLLAYLRILVNPNDTVSLRRILNVPKRGIGER 479 Query: 452 DIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504 I E +E +++ A ++ + + I +L A+ D Sbjct: 480 AEAMIEAFAARERIPFWEGLKRAQEAPGLATRSLNAIRDFVALIEDLR--ARELPLRDLV 537 Query: 505 TLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPP 559 + A R + + +D + E ++ E + L + ++ Sbjct: 538 EEVANATGYRVELEESDDPQDANRLDNIKELVSMAAEYEAANPDGGLVGFLEQVSLVSDA 597 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + V +MT+HTAKGLE PVVFL VF H+ Sbjct: 598 DEIPDGEDHGGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPHQRSMTDP------------ 645 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 EE RL YVG+TRA +L + S + Sbjct: 646 ----------------------KELEEERRLAYVGITRAKQRLYFSRAVVRSAWGAPSFN 683 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 + ++ + I+ K W A + + + Sbjct: 684 PASRFL-----DEVPAELIEWRTDPGKTPWTAATERREPGRSRTAGPARPGARPIPALAP 738 Query: 740 PKKLFS 745 ++ Sbjct: 739 GDRVAH 744 >gi|284047984|ref|YP_003398323.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM 20731] gi|283952205|gb|ADB47008.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM 20731] Length = 750 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 101/602 (16%), Positives = 195/602 (32%), Gaps = 121/602 (20%) Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 K ++ + +++K L L + D + + A + A Sbjct: 118 KNVLKEALKKLNLDEKFYPLPGLLATISNAKNAQVDAAAFARQAEDYHAKK--VAEIYAE 175 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y++ ++ +DF+DL++ T +R K + +++LIDE QDT+ +Q+ + Sbjct: 176 YQKHLVQSNAVDFDDLLLLTVK---LLQTVPEVREKYQNKFHYVLIDEYQDTNHVQYLLA 232 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 + L+ L AVGD QSIY + GA+ +L ++ + Sbjct: 233 KLLSA----------PENNLCAVGDIDQSIYGWRGADISNILDFEKDYPQ--------AR 274 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 I +L ++RST IL ++V + + LW Sbjct: 275 IFKLEQNYRSTQVILDAANEVIKHNAARRPKN---------------------LW----- 308 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 N Q ++ D + A + I + T + D+ Sbjct: 309 --TENGNGQPIAYYQARDDREE-------AEFVVGQIRKLQREGT----------KLGDM 349 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 +L R + + + + V D +KD ++ RF+ ++ D Sbjct: 350 AILYRTNAQSRMFEENL----INNGVPYVMVGSLKFYDRKEVKDTLSYLRFLSNERDIQG 405 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYE------YIQKFANCGISKFQHVIKYIHE 490 ++ P + K+ T ++ ++ K Q I E Sbjct: 406 LERIINEPKRGIGAATVAKVRTLLEDSGMTLPEVLQTVQARELLGRAFPKIQAFSDMIQE 465 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE----QNS 543 L + D +L + ++ +D L+EFL + + Sbjct: 466 LARVKDTLPVKDLMEQVLEKSGYLEALRLEGSDQSKSRLDNLNEFLRIADEFAKDPGEEN 525 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 +L++ ++ + + V +MT+H+AKGLE PVVF+ +F + Sbjct: 526 NKTLEDFLNHVALVADID--DAKLTQDSVTLMTLHSAKGLEFPVVFIGGMEDGLFPSQRS 583 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + RL YVG+TRA +L Sbjct: 584 LEDEDKLEEE----------------------------------RRLCYVGITRAKKRLY 609 Query: 664 IC 665 + Sbjct: 610 LT 611 >gi|149191373|ref|ZP_01869625.1| DNA-dependent helicase II [Vibrio shilonii AK1] gi|148834790|gb|EDL51775.1| DNA-dependent helicase II [Vibrio shilonii AK1] Length = 723 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 116/691 (16%), Positives = 225/691 (32%), Gaps = 132/691 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + S + + + + L S + Sbjct: 30 GAGSGKTRVLVHRIAWLMSVENASPFSIMSVTFTNKAAAEMRGRIEELMMGSSSGMWNGT 89 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111 F + L F Q+ ++ + I ++ D K+ + +I + Sbjct: 90 FHGICHRILRAHYLDAKLPEDFQILDSDDQQRLLKRLIKAQNLDEKQWPARQAAWWINGK 149 Query: 112 --DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + Y+EA + ++DF ++++ ++LL+ ++ Sbjct: 150 KDEGLRPQHIDSYQDPVTKTYLQIYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFV 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R HIL+DE QDT+ IQ+ +R +T + VGD+ QSIY + Sbjct: 207 REHYQARFKHILVDEFQDTNNIQYAWLRMMTG----------PDCKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + + I L ++RST IL +++ + G Sbjct: 257 RGAKVENIQKFLDEY--------LGATTIRLEQNYRSTKTILEAANELIANNTERMGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW ++ S S ++ L + AR Sbjct: 307 -------------------ELW-------TDGNEGEKISVYSAYNELDE-------ARFA 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I T D +L R + ++ ++ Sbjct: 334 VNKIKEWQETGGSL----------TDCAMLYRNNAQSRVLEEAL----IQAQLPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468 + IKD + R I ++ DD +F ++ +P + + I R T++E Sbjct: 380 MRFFERQEIKDALGYLRLIANRNDDAAFERIVNTPTRGLGDKTLDTIRFAARDRGATLWE 439 Query: 469 YIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 A I+ I+ L + H+ ++ + G Sbjct: 440 ASNALLEEKVFAGRAAGALSRFIELINALEDDTFESALHEQTDHVIKTSGLFLMYEQEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + I+ L+E + T + E+ + L + L + + V++MT+ Sbjct: 500 EKSKARIENLEELVTATRQFEKPEEAEDMTLLTAFLTHAALEAGEGQADEFDDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+VF+V +F + Sbjct: 560 HSAKGLEFPMVFMVGVEEGMFPSQMS---------------------------------- 585 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA ++L I Sbjct: 586 AEEAGRLEEERRLCYVGMTRAMEKLFITYAE 616 >gi|325578673|ref|ZP_08148749.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] gi|325159712|gb|EGC71843.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] Length = 725 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 111/602 (18%), Positives = 205/602 (34%), Gaps = 117/602 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L K+ V I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRAYELFAKKPV---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + I+ L + + VGD+ QSIY + GA+ + + + + Sbjct: 234 YAWIKILAGN----------TGKVMIVGDDDQSIYGWRGAQVENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL +++ S + G + LW Sbjct: 276 -NAETIRLEQNYRSTGNILKSANQLISNNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + A+ +A I N + Sbjct: 313 ------TDGEMGEPVGIYAAFNELDE-------AKFVASQIQNWVDDGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDVLRNLTRERQITLWQAVQVATQENMLTGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + G + I+ L+E + T + Sbjct: 466 ELINSLQVDTAEMPLFAQTDFVIKHSGLYDMYKQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + +L + L ++ H + V +MT+H+AKGLE P VF+V VF Sbjct: 526 DEAEDMTDLTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGVFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKQ 611 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +L IC + K + + + + +++ T + ++ S PE Sbjct: 612 KLTICYAESRRVYTKEERHLPSRFITELPSECIQEIRLRGTVTRALNQAKVGSLSASLPE 671 Query: 721 NT 722 N Sbjct: 672 NE 673 >gi|270294147|ref|ZP_06200349.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275614|gb|EFA21474.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 784 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 100/664 (15%), Positives = 200/664 (30%), Gaps = 123/664 (18%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL+ T L + + + ++ +IL+D Sbjct: 169 AAKVPALRDIYQRYWERCRRADAMDFDDLLFYTFLLFRDHPE---VLARYQEQFRYILVD 225 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ L ++ + + VGD+ QSIYSF GA+ +L ++ Sbjct: 226 EYQDTNFAQHSIVLQLAKN----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 275 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + + Sbjct: 276 YP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNQ--------------------- 306 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 W+ + + + + + + I+ + Sbjct: 307 -------WQIRKEVFSEKEKGEAIGVYQAYSDVEEGDI-------VVNKIAELRRE---- 348 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + D +L R + + R + IKD++A Sbjct: 349 -----KRYAYSDFAILYRTNAQSRIFEEAMR----KRSMPYRIYGGLSFYQRKEIKDVIA 399 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVY-------EYIQKFAN 475 R I++ D+ +F ++ P + + KI +++ Y F Sbjct: 400 YFRLIVNPNDEEAFKRIINYPARGIGDTTVGKIIAAATGHNVSLWTVLCEPLAYGLNFNK 459 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + K Q + I I A + ++ I+ E + ++E Sbjct: 460 GTVGKLQVFRELISAFITDAAEKNAYEIGADIIRQSGIINDVCQDNSPENLSRKENIEEL 519 Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N E N L + +SE+ + ++ +MTVH+AKGLE Sbjct: 520 VNGMSDFCAQRQEEGNPNVLLGDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFK 578 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D R+ + + Sbjct: 605 ERRLFYVAITRAEEHCFLSYAKTRFRYGKMEFGSPSRFLKDIDIRFLRLPQDAGMFRRVE 664 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 +E A+ + +RE+ + + K + PS Sbjct: 665 EEAAAFRR--ENARGFAPDREDAPYGGKERVSVRPKQQIIAPTVPRNLKRVAPSANTAST 722 Query: 767 KTNL 770 + Sbjct: 723 SPSA 726 >gi|118475254|ref|YP_891891.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus 82-40] gi|118414480|gb|ABK82900.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus 82-40] Length = 685 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 110/544 (20%), Positives = 191/544 (35%), Gaps = 125/544 (22%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 YEE N ++DF+DL+ T +L + + +I +I++DE QDT+ Sbjct: 172 AKAYKLYEEYLAANNLVDFDDLLALTYKILLNNND---LANEISNRYKYIMVDEYQDTND 228 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q++++R L E L VGD+ QSIY + GA+ + +L K Sbjct: 229 LQYKLLRKLCEC----------HENLVVVGDDDQSIYGWRGAKIENILNFKDQFNN---- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL +++ + G ST Sbjct: 275 ----VKLIKLEENYRSTPSILKAANELIDHNRSRLGKQLFSTKK---------------- 314 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 Y + + +I AR IA I ++G+ Sbjct: 315 -------------------DEYPIQIIENGDENIEARVIAGQIQKLLGSG---------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++A +I +L R + + N +I + + IKD+++ R IL+ Sbjct: 346 VKADEIAILYRVNALSRSLEDGL----NKARIPYKMVGGVKFYERMEIKDIISYLRLILN 401 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK-----FQHV 484 DD S ++ P + + K+ ++Y I + I K Sbjct: 402 PNDDFSLNRIINRPKRGLGKVSLAKLEKFAYENKTSIYNAIYMIDDDTIGKKLRVVLLDF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQN 542 + EL +A + L G +++ G + + +DEF QN Sbjct: 462 ANELKELSSLAPNNLLAN-----LEKSFGIKEYYKNLPDGVDRVANIDEFYALIKDQIQN 516 Query: 543 SYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 S +L+E ++EL + + + + IM+VH +KGLE +F++ F Sbjct: 517 DESFALEEFLNELALESEQDRI----SDDAISIMSVHASKGLEFEHLFVIGLEEGFFP-- 570 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 G S EE RL YV +TRA Sbjct: 571 -----------LIGDG------------------------SDIEEERRLAYVAITRAKSG 595 Query: 662 LIIC 665 L + Sbjct: 596 LNLS 599 >gi|257865963|ref|ZP_05645616.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30] gi|257872296|ref|ZP_05651949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10] gi|257875590|ref|ZP_05655243.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20] gi|257799897|gb|EEV28949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30] gi|257806460|gb|EEV35282.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10] gi|257809756|gb|EEV38576.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20] Length = 747 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 115/803 (14%), Positives = 239/803 (29%), Gaps = 142/803 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L + Sbjct: 31 GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVSQLLGSGGEDVWVST 90 Query: 66 FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F + L + KN + ++++ +K LK+ Sbjct: 91 FHSMCVRILRRDVDRIGYSKNFTIIDSSEQNTLMKRVLKELNIDPKKYDPRSILGTISHA 150 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T + +++ SL + Y++ + N +DF+DLI+NT L + + + Sbjct: 151 KNELLTPEAYQAMEGSLFEQIVGRCYEKYQKELRNNQCMDFDDLIMNTIRLFQDNEDA-- 208 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 ++ ++I +DE QDT+ Q+ ++ L F R L VGD QSIY Sbjct: 209 -LQFYQRKFHYIHVDEYQDTNHAQYTLVNLLAARF----------RNLCVVGDADQSIYG 257 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + I L ++RST IL ++V N + Sbjct: 258 WRGANMQNILDFEKDYP--------DAATILLEQNYRSTQTILNAANQVIKNNRNRPDKN 309 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + ++ ++ + S AR Sbjct: 310 ---------------------LW-------TENHDGEKITYY-------RGDSERDEARF 334 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I + + D +L R + +I + + Sbjct: 335 IVSEMQKQIAE---------KNRKFGDFAILYRTNAQSRIIEEML----LKANVPYTMVG 381 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 D I+D++A I + D +S ++ P + K+ ++ Sbjct: 382 GRKFYDRKEIRDILAYLSAIANPRDSISLERIINVPKRGIGATSVEKLRAFANLHEWSLL 441 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + + + + + S + IL RQ+ +++ Sbjct: 442 EAAMNVELANISGKAGKELGSFGMMMDGFAQMVPYLSVTELTKEILEKTGYRQELVNQNN 501 Query: 523 NEVI---DVLDEFLNFTLRNEQNSYSS-----------LQELISELEQYPPTIKRAHSAN 568 E + L+EFL+ T ++ + L +++L ++ Sbjct: 502 LEAQARLENLEEFLSVTQEFDKRFEAQNEDDADAPDEKLSVFLNDLALLSDVDSYEEESS 561 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 V +MT+H AKGLE PVVFL+ +F Sbjct: 562 Q--VTLMTLHAAKGLEFPVVFLIGLEENIFPLSRALMEESELEEERRL------------ 607 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 YVG+TRA ++L + + + ++ + + Sbjct: 608 ----------------------AYVGITRAEEELFMTNAFSRTLYGRTQYNRPSRFIEEI 645 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + ++ + + K Sbjct: 646 EQDLLQSLGERSQPKAAAPFQPKVFKPSYTQPRQTTVASKQQTSAAGNTWQVGEKVQHKK 705 Query: 749 NDINEPYILNPSTIDTKGKTNLE 771 I S D + Sbjct: 706 WGIGTVVRTTGSAQDVELDVAFP 728 >gi|28899787|ref|NP_799392.1| DNA-dependent helicase II [Vibrio parahaemolyticus RIMD 2210633] gi|260362520|ref|ZP_05775446.1| DNA helicase II [Vibrio parahaemolyticus K5030] gi|260877200|ref|ZP_05889555.1| DNA helicase II [Vibrio parahaemolyticus AN-5034] gi|260897243|ref|ZP_05905739.1| DNA helicase II [Vibrio parahaemolyticus Peru-466] gi|260901376|ref|ZP_05909771.1| DNA helicase II [Vibrio parahaemolyticus AQ4037] gi|28808039|dbj|BAC61276.1| DNA helicase II [Vibrio parahaemolyticus RIMD 2210633] gi|308088957|gb|EFO38652.1| DNA helicase II [Vibrio parahaemolyticus Peru-466] gi|308094142|gb|EFO43837.1| DNA helicase II [Vibrio parahaemolyticus AN-5034] gi|308107188|gb|EFO44728.1| DNA helicase II [Vibrio parahaemolyticus AQ4037] gi|308112661|gb|EFO50201.1| DNA helicase II [Vibrio parahaemolyticus K5030] Length = 724 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 103/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R +T + VGD+ QSIY + GA+ + + + R Sbjct: 230 QYAWLRMMTG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTREFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 274 --SVTTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 311 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R + ++ Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALAYMRLMANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R T++E A Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ I L H+ ++ + G + I+ L+E + T + E+ Sbjct: 463 IELITALEDDTLEMPLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 523 PEEAEEMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHS 668 +L I Sbjct: 609 QKLYITYAE 617 >gi|226327092|ref|ZP_03802610.1| hypothetical protein PROPEN_00957 [Proteus penneri ATCC 35198] gi|225204310|gb|EEG86664.1| hypothetical protein PROPEN_00957 [Proteus penneri ATCC 35198] Length = 1203 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 144/978 (14%), Positives = 302/978 (30%), Gaps = 156/978 (15%) Query: 21 WPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W ++ + + + L K + + + T + +Q+ Sbjct: 242 WHAHQHEIEAWITASGVDKRSYSSRFLPKWIEEITLWASTAETKSYQLPDCLVRFSQETL 301 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 +K+ T+ + E +R + + + + E Sbjct: 302 NEKS--TKGPAPEHILFVE------------IERLTKQSLTLRDVILINAIPEIRRGIEN 347 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K + + F+DL+ + LK+ + + I + +IDE QDT Q+ + ++ Sbjct: 348 EKMRRGEMGFDDLLTRLDRALKR-EGGEALAQAIRERYPVAMIDEFQDTDPQQYRIFDAI 406 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 ++ L +GD KQ+IY+F GA+ ++ ++ Q Sbjct: 407 YGEY--------ENSGLLFIGDPKQAIYAFRGADIFTYIQARK----------QTSHHYT 448 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L ++RS ++ V+K+F + Sbjct: 449 LNTNWRSAPGMVNAVNKLFMRSNAPFLFEHIPFIEVSSAEKNQDMAFVYHDKPISPFN-- 506 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRVIQAK 374 W + +S+ + I+A + A I + + + G K+ + + Sbjct: 507 --------FWLAEGESVSTGNYEQIMAAQCAAQIRDWLSAGDQQQAWLIEQGTKKTVTSA 558 Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434 DI+VLVR R++ LI+ L SV ++R + + KDL+ L + +++ E + Sbjct: 559 DIMVLVRSRREAILISDALNLLSIQ---SVFLSNRESVFETNEAKDLLWLLQAVVTPEKE 615 Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494 L S LF FS I + + E + + L + Sbjct: 616 RVLRASLASRLFGFSAKQIDDLNRSEAHWNSYVEKFADYYVLWQKR--------GVLPML 667 Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFTLRNEQNSYSSLQELI 551 + + +L + G ++ + E L + L +E L + I Sbjct: 668 RKIMMDNQIAENLLASIGGERRLTDIM------HIGELLQETSLQLDSEHALIRWLAQQI 721 Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 S + + ++ N VRI T+H +KGLE P+V L + + Sbjct: 722 SHPDAQSENQQMRLESDRNLVRICTIHKSKGLEYPIVCLPFACNYQEQKG---------A 772 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------ 665 L D SR + ++ + E RLLYV +TR+ + Sbjct: 773 LYHDREKFYAKLDIFSRP----ESLRLADEERLAEDLRLLYVALTRSKFCCYVGVAPLVK 828 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------DEWIAYEWSTHH 718 + S ++ ++ + + + ++ D A+ + + Sbjct: 829 GNKRKSGLTDLHKNALGYLLQQGEEGNSELLHQAIHALLDDNISVTTLDNISAHRYQSQL 888 Query: 719 PENTPLEREETIKQLMDEQKIPKK-------LFSPIKNDINEPYILNPS-----TIDTKG 766 T LE +Q+ D +I D+ + L S D KG Sbjct: 889 APETKLEAAIFKRQIHDNWRITSYSGLTYQHSNRHYHFDLGDIESLVQSIAPGLDTDAKG 948 Query: 767 KTNLESLLS-----DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + + + G +H LL+V+ + + ++ + + K Sbjct: 949 EKRQGEVDENSIHHFPRGAVAGTFLHSLLEVL-DFSQPIDEQWMQGQLSVQG--FDEKWA 1005 Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKK--------------- 860 L+ + L P+ + E+ I Sbjct: 1006 PLLVTWMETLFHTPLNSQGLCLADIPKSQQLDELQFYLPIEKELSSTQLTQLISQFDPLS 1065 Query: 861 -----------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------TH 900 + ++ G ID + + ++ +YK++ ++ + Sbjct: 1066 RHCPALQFQQVEGMLKGFIDLVFSWEGKYYVVDYKSNWLGESSEDYTQEAMMNAMMDHRY 1125 Query: 901 IAQLSIYEKILKDSYPNK 918 Q +Y L + Sbjct: 1126 DLQYQLYILALHRFLQQR 1143 >gi|218767076|ref|YP_002341588.1| DNA helicase II [Neisseria meningitidis Z2491] gi|6900436|emb|CAB72035.1| DNA helicase II [Neisseria meningitidis] gi|121051084|emb|CAM07354.1| DNA helicase II [Neisseria meningitidis Z2491] Length = 735 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 101/582 (17%), Positives = 192/582 (32%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + +FAVG Sbjct: 204 QSNEI---LRRHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNTA----------VFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILASANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I + +I VL R + +I Sbjct: 333 -----AQFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P I + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 E A +K ++ I L + S + IL + + ++ Sbjct: 434 QEQGITLWQAACNAGAKATKIAAFVRLIEALRNQVGQMSLSEIIVGILKDSGLTEHYRTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ +L + +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPDNISDDPAFPILAFLSNAALESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH AKGLE VFL F + Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|294792591|ref|ZP_06757738.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27] gi|294456490|gb|EFG24853.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27] Length = 1251 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 116/699 (16%), Positives = 224/699 (32%), Gaps = 64/699 (9%) Query: 28 VSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEERFSLLSSF------FLTQK--- 77 + + + ++ TG A + + + F+ + Sbjct: 237 RERLERMEQILLDPTGPHKWQNIYDNQLAALGMLSAAQTWDDMGEACKHVDTFIKDQFRM 296 Query: 78 FTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRD---RFNTYKMFKSTLASLTLA 130 + + + + L K+ LK Q + + + + + L Sbjct: 297 GSKEAQAYDPILVAEFKSLGGQNKDDLKAMQAAIFTVPEATLQDQFKAQYPIIEGLVELT 356 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEV 185 + Y + K++ ++DF DL LL + + + ++ I++DE Sbjct: 357 IAFHQAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSDVAKELQDTFKEIMVDEY 416 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q +I + S F VGD KQ+IYSF A+ + + Sbjct: 417 QDTNGVQETIINLI-----------SRIDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG 465 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR---- 301 I+L +FRS A+IL + +F + T R Sbjct: 466 ----GNDAVERRIDLAKNFRSDANILAATNFLFYQIMTEDAAELNYTEAESLIPGRIVED 521 Query: 302 ---IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 G V+L VS+ + E D + I I + Sbjct: 522 APEDWIGGDVELQLLDVSKDTLGASESDE------DEGDDPENNERELDFIIQKIKEIHA 575 Query: 359 TDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 +G R I+ +D +L R I V N+R + Sbjct: 576 AKKQVQNPDGTFRQIEWRDFAILRRSLAGWGTRAV---EAMRQAGIPAVVNERDGYFEAQ 632 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 I+ L+AL I + E DL +L S L +++ + +++ + +A Sbjct: 633 EIQLLLALLSVIDNPEQDLPMAAVLHSGLVGLDANELGALRLS--GDGSLWSLMPAYAQE 690 Query: 477 -GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLN 534 + I ++ +++ D I ++ G + + Sbjct: 691 AQDERLLAFIGHMERWRTLSRRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYD 750 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVF 589 E + + L + +E + + S N VR+MT+H +KGLE PVVF Sbjct: 751 RAKGYEASGFRGLFRFLRFVESLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVF 810 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L + ++ I + + + + + + E R Sbjct: 811 LSGVQKRFNMMDLRSELLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQR 870 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 +LYV +TRA D+L + K T +++ ++ Sbjct: 871 ILYVALTRARDKLFMTGFIKGFKNSKGVLSTIGELIKNA 909 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 14/224 (6%) Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + + + E + ++ E L PI L S + L+S Sbjct: 1021 DATRRTAKISVSELKRRFQERELEAGTIDTLNEPIATVEVSADALANSVFG-RKPQALQS 1079 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-SITRL 831 G ++H+ +Q + + + + +E L S+ + Sbjct: 1080 EDDVLTGAQWGTLMHEAMQWLPLVKYTQASLTKELDALVAKGTFTEEERNLLSDTSLYKF 1139 Query: 832 LENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFE 882 + + + E+ S +++ + G ID + + Sbjct: 1140 FNFDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEEDGEWVLVD 1199 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 YKT E + + Q+ +Y++ L+ + IY Sbjct: 1200 YKTDRVTSG--EELIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1240 >gi|282860904|ref|ZP_06269970.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE] gi|282564640|gb|EFB70176.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE] Length = 815 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 114/655 (17%), Positives = 204/655 (31%), Gaps = 128/655 (19%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 + L++ P K + K +LK +L + F Sbjct: 178 DAADSKRLMALVCRDLDLDP-KRYPPKSFTAKVSNLKNEL------IDEETFAGQAADGF 230 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T A Y+ ++ LDF+D+I+ T LL+ + + H+ Sbjct: 231 EKT------LAQAYALYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHV 281 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 L+DE QDT+ Q+ ++R L +P L VGD QSIY+F GA + +L+ Sbjct: 282 LVDEYQDTNHAQYTLVRELVG----PAGEKDAPGELCVVGDADQSIYAFRGATIRNILQF 337 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + + I L ++RST IL+ + V E+ + + Sbjct: 338 EEDYP--------DATTIMLEQNYRSTQTILSAANAVIERNESRRPKN------------ 377 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + + A+ IA I + Sbjct: 378 ---------LWTNAGAGTRITGYVA--------------DTEHDEAQFIADEIDRLTDAG 414 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 +A D+ V R + + + + + ++D Sbjct: 415 E---------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRD 461 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS 479 ++A R + + ED + +L P + I E + + +++ Sbjct: 462 VLAYLRVLANPEDTVPLRRILNVPKRGIGDRAEAMIDALSLREKISFPQALRRVDEAYGM 521 Query: 480 KFQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 + + EL I + + P +L + + + ++ L Sbjct: 522 AARSANAVKRFNTLMEELRTIVESGAGPAVVLEAVLERTGYLAELQASTDPQDETRVENL 581 Query: 530 DEFLNFTLRNEQ-----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 E L EQ +L E + + L I + +MT+HTAKG Sbjct: 582 QELAAVALEFEQDRAEEEGAGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKG 641 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVFL VF H + Sbjct: 642 LEFPVVFLTGLEDGVFPHMRALG----------------------------------QVK 667 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA ++L + + + S + + + + K+ Sbjct: 668 ELEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPDQHLEWKR 722 >gi|320157772|ref|YP_004190151.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O] gi|319933084|gb|ADV87948.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O] Length = 724 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL++ +IR HIL+DE QDT+ I Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLREN---KFIREHYQARFKHILVDEFQDTNNI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I + Sbjct: 311 -------TDGVEGEPISIYSAYNELDE-------ARFAVNKIKEWQDKGGVL-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R I ++ Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLIANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P + + + R T++E Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETVRFAARDRGCTLWEASIALIEEKVLTGRAAGALSRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ I L + H ++ + + G + I+ L+E + T + E+ Sbjct: 463 IELITALEDDSFEMPLHIQTDHVIKSSGLYTMYEQEKGEKSKARIENLEELVTATRQFEK 522 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 523 PEEAEEMSLLTAFLTHAALEAGEGQADDFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHS 668 +L I Sbjct: 609 QKLYITYAE 617 >gi|239625645|ref|ZP_04668676.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519875|gb|EEQ59741.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1326 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 139/735 (18%), Positives = 265/735 (36%), Gaps = 86/735 (11%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA----QTLQQASQTQCIEERFSLLSS 71 +++D ++ + + E P + + QA T E R+ L Sbjct: 216 LFQDTARQMEELGGQLDTALEVCREENGPLAYEPMLMSDRAKIQAIGTAACEGRYEQLYQ 275 Query: 72 FFLTQKFTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125 L F +I ++EI+ ++++KK+ + ++ + ++ +S Sbjct: 276 RLLNMSFDRLASIRSKEIDGDKKSFVTVCRDRVKKAVGKCRELYGSQSPDEVVESIRGTR 335 Query: 126 -----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDV------------SA 167 L L + + Y AKK+ VLDF DL + LL+K + Sbjct: 336 VVIQKLLELTERFDNEYRAAKKERNVLDFNDLEHLALEVLLEKDPDWEEGEDEGAARRPS 395 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + ++ ++ IL+DE QD++ +Q +I S++ + +F VGD KQSIY Sbjct: 396 PVADELSRQYEEILVDEYQDSNYVQEALITSISRE-------RYGHPNVFMVGDVKQSIY 448 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQ 285 F A P+ + + ++ +IEL +FRS +LT V+ VF N Sbjct: 449 RFRLARPELFMEKYESYAS----VDGQYQMIELQQNFRSRESVLTSVNDVFYQIMTKNLG 504 Query: 286 GLSEDSTTTIRHRSSRIG-QVGTVQ--LWEQVVSQHDSQCNPQQ-------ESWTSYFDS 335 G++ T + + TV WE+ + + ES + Sbjct: 505 GITYTRDTALYPGAVFKEVGPDTVTGMDWEKEGGALSAGTPTELLLVDTGSESLKQLDED 564 Query: 336 LPQESSASILARRIAYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLIT 390 ++ + AR A I ++ D R + DI++L+R Sbjct: 565 ALDYTARELEARMAARRIRELVSGDEGLMVWDKEKEAYRRARLGDIVILLRSMTGWS--- 621 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 + + + I R + + ++ +++L I + D+ +++SP+ S+ Sbjct: 622 EVFVNVLMNEGIPASAQTRTGYFNTVEVETILSLLSVIDNPMQDIPLAAVMRSPIVGMSD 681 Query: 451 DDIFKI---------------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 +++ + E+ T ++ + A K H+ ++ Sbjct: 682 EEMAWMVAAFKKNSKKGQDRGVYGAWSMWMEAESGTFHKVPGEAAASIRKKLSHLSGLLN 741 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 L A++ H+ + G LD + E SY L Sbjct: 742 GLRREARYLPIHELLYRVYRDSGYYDYVSAMPAGETRRGNLDMLVEKAAAYEATSYKGLF 801 Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + +E+ N VRIM++H +KGLE PVVFL G + Sbjct: 802 HFVRYIERLKKFDTDFGEAATAGEQDNTVRIMSIHKSKGLEFPVVFLSGMGKRFNKQDAY 861 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ + L + K+ L + ++ T E R+LYV MTRA ++LI Sbjct: 862 GRILLDADLGVAADYLDLDLRVKAPTLKKQALKRRMELETMGEELRVLYVAMTRAKEKLI 921 Query: 664 ICKHSNTSNEKKSNQ 678 + + K + Sbjct: 922 MTATDRSLEAKLAKW 936 Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats. Identities = 45/355 (12%), Positives = 99/355 (27%), Gaps = 22/355 (6%) Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 H++ I + I + +R ++++ + E Sbjct: 963 MAKPAIPDDHMQLQCIQVRELVGEEVGRQIVRQMTREDLLAVDRNQVYDREFGERLEAAV 1022 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 D + + S KK +Q + + + + ++ + Y Sbjct: 1023 NYRYPHMDDTGLYAMVSVSELKKQSQIGRSEDTIGTGNVETEGVGLEYLGKLAGGAGQEY 1082 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI----KNDINEPYILNPSTIDTKGKT 768 + + K P P + + +P + + Sbjct: 1083 PGQPAGGTGQEHLEQPAGGTGQEYLKQPAGGTGPEQLKQPDALTQPQKRPAPEVRAVPDS 1142 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS- 827 + ++ RG H L+ I + + T + + +E + + + Sbjct: 1143 GRIQPGTPSRGALRGTAYHAALEHISFQDIKSLEETEAALETLVEQGYLNQETRGFIRAG 1202 Query: 828 -ITRLLENPMMTTAMSCDS----YSEVSVSGKINCPKKD-------IIISGRIDQISISQ 875 I LE+P+ + + E I ++I G ID Sbjct: 1203 DIWAFLESPLGRRMAQAQAEGRIHKEQQFIIGIPARDMGRGDSDELVLIQGIIDAYLEEP 1262 Query: 876 QNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + +YKT H + E + + QL YE+ L K + +IY Sbjct: 1263 DGLVLIDYKTDHVPKENREQGAAMLAARYRVQLDYYERALTQL-TGKKVKERVIY 1316 >gi|91228031|ref|ZP_01262116.1| DNA helicase II [Vibrio alginolyticus 12G01] gi|269964541|ref|ZP_06178780.1| DNA helicase II [Vibrio alginolyticus 40B] gi|91188260|gb|EAS74559.1| DNA helicase II [Vibrio alginolyticus 12G01] gi|269830668|gb|EEZ84888.1| DNA helicase II [Vibrio alginolyticus 40B] Length = 724 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 179/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 311 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R I ++ Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLIANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R T++E A Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ + L H ++ + G + I+ L+E + T + E+ Sbjct: 463 IELVTALEDDTLEMPLHHQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 523 PEEAEDMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHS 668 +L I Sbjct: 609 QKLYITYAE 617 >gi|269218850|ref|ZP_06162704.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211961|gb|EEZ78301.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848 str. F0332] Length = 831 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 95/597 (15%), Positives = 185/597 (30%), Gaps = 120/597 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y+ ++ +DF+DLI++T D+L+ + + HIL+DE QD Sbjct: 172 QVLAHAYAAYQIRLRQANAMDFDDLIMSTVDVLRSHPD---VADHYRRRFRHILVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E++R+LT G + L VGD QSIY+F GA + + ++ Sbjct: 229 TNRAQYELVRALT-----GTAEDDNHGELTVVGDADQSIYAFRGATIRNIEDFEKDFP-- 281 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I L ++RST IL+ + + + + Sbjct: 282 ------EARTILLEQNYRSTQSILSAANGIIANNSGRRPKR------------------- 316 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + + + I + Sbjct: 317 --LW-------TDRGDGEKIVGYVADSEADESA-------FVVSEIDRLRDDA------- 353 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + IKD +A Sbjct: 354 --GISYGDVAVFYRTNAQSRAVEDMF----VRSGIPYRVIGGTRFYERREIKDALAYLHA 407 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480 I++++D +S +L P + + + + + Sbjct: 408 IVNRDDTVSIRRILNMPKRGLGAKSEEAVAMHAARWDVSFGAALCDVGDPHPERGPVSGI 467 Query: 481 -------FQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 + + +A+ +P + S + ++ L Sbjct: 468 GKKASATMAGFVSMLQSGRGMAEAGAAPDAILDFAMEESGYLDMLRSSDDPQDESRLENL 527 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPV 587 E + + + + L L+Q + EV +MTVHTAKGLE PV Sbjct: 528 AELHSVAVDFHKANPD--ATLADWLDQVSLVSDADQLADGDEGEVTLMTVHTAKGLEFPV 585 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF+ F H + E Sbjct: 586 VFVTGLEDGTFPHMRSLIDP----------------------------------AELAEE 611 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 RL YV +TRA +L I + + ++ + + + + ++ + + Sbjct: 612 RRLAYVAVTRARQRLYITRAAARASWGAPQEFPPSRFIEEIPDSLIDWRRSESSADA 668 >gi|149372162|ref|ZP_01891432.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49] gi|149354929|gb|EDM43491.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49] Length = 780 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 107/654 (16%), Positives = 197/654 (30%), Gaps = 133/654 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y + K +DF+DL++ TN+LL + + K +IL+DE QDT+ Sbjct: 183 LGDIYQRYVDKCFKAGAMDFDDLLLKTNELLTRFP---QVLAKYQDRFRYILVDEYQDTN 239 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++++L++ F + + VGD+ QSIY+F GA +L ++ Sbjct: 240 HSQYLIVKALSDRF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYDN--- 286 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RST +I+ + + + + ++ Sbjct: 287 -----VKTFRLEQNYRSTKNIVNAANSIIEKNKTRLDKVVWTAN---------DDGAKIR 332 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + + + R +A I F N Sbjct: 333 VNRTMTDGDEG--------------------------RFVASDI---------FENAMNE 357 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + +L R + + R I IKD++A R +L Sbjct: 358 QLPFDKFAILYRTNAQSRAMEDALR----KKDIPYRIYGGLSFYQRKEIKDVIAYLRLVL 413 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET--------VYEYIQKFANCGISKF 481 + +D+ + ++ P + I K+ + E + K K Sbjct: 414 NPKDEEALKRVINYPARGIGQTTIDKLIVAANHYERSMFEVMQVLDRVDLKINKGTRGKL 473 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 Q + I + I + E ++ ++E LN Sbjct: 474 QDFVTMIQSFQVLNNGYDAFMMAEHITKKTGLVTELKKDGTPEGIARMENIEELLNGMSD 533 Query: 539 N--EQNSYS----SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 EQ + SL E + ++ + N+V +MTVH AKGLE P V++V Sbjct: 534 FVEEQKEIADTNGSLAEFMEDVALATDADN--DKGDDNKVALMTVHLAKGLEFPYVYIVG 591 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 ++F +S EE RL Y Sbjct: 592 MEEELFPSGMSMNT----------------------------------RSELEEERRLFY 617 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA Q + + Y R + + I Sbjct: 618 VAVTRAEKQATLTYTQ-----------SRYRWGKLIDAEPSRFITEIDESFLEYLTPITE 666 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + ++ + K + + K P + + + L P DT Sbjct: 667 QRYKPLIDSDIFGEVDKSKLRLKKPTAGKAPSGPTEEQLRKLRRLRPVKSDTDK 720 >gi|227892257|ref|ZP_04010062.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741] gi|227865898|gb|EEJ73319.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741] Length = 747 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 119/807 (14%), Positives = 243/807 (30%), Gaps = 133/807 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 33 GAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERVNNLMGEGAEDIWVST 92 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + ++ +++ +K+ L + K R + + Sbjct: 93 FHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQVLNDLNIDTKKYDPRAILSVISNA 152 Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 L + Y+ N +DF+DLI+ T L + + Sbjct: 153 KNDLLDPKDYAQQANGPFEEIVSKAYFEYQNQLANNQAMDFDDLIMQTIRLFNESPET-- 210 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 ++ ++I +DE QDT+ Q+E++ L + R L VGD QSIY Sbjct: 211 -LEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKY----------RNLCVVGDADQSIYG 259 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + ++ + ++I+L ++RST +IL + V N + + Sbjct: 260 WRGANMENIMNFEEDYP--------DATVIKLEQNYRSTKNILAAANNVIENNVNRKDKT 311 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 312 ---------------------LW-------TDNKQGDKIHYYRANNANEE-------AYY 336 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I I + D +L R + +I I Sbjct: 337 VVKKIQEQIRNNGR---------HYGDFAILYRTNAQSRIIEETF----VKTNIPYKLVG 383 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I D +A R + + D +SF ++ P + + K+ + ++ Sbjct: 384 AHKFYDRKEIMDTLAYLRLVTNPADSMSFERIVNEPKRSIGSVTVGKLRTFSQIHGMSML 443 Query: 468 EYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + A ++ + + I +L + + + IL + Sbjct: 444 EASKSAALAGVSAKASNELEKFAEMIEQLHEYQKAHNVTEVTERILDVTGYKANLQREDT 503 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVRIM 575 E ++ L+EFL T + +Q+ +E + L + +EV +M Sbjct: 504 LENRNRLENLEEFLTVTKQFDQDWEPEDEESDPFVDFLADLALVSDQDSVEEEPDEVTLM 563 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVVFL+ +F Sbjct: 564 TLHAAKGLEFPVVFLMGLEEGIFPLS---------------------------------- 589 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + ++ EE RL YVG+TRA ++L + + KS + + + Sbjct: 590 RAVMDENELEEERRLAYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEELIQS 649 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + ++ + + T+++ + + K Sbjct: 650 DNQTVASTTLTSKRTRSREVPFSKKPKYRMPAGTVERPKETGADKQSWNIGDKISHKAWG 709 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR 782 + G+ + + + R Sbjct: 710 TGTIVKVSGDGEDTELDIAFEGKGIKR 736 >gi|308069947|ref|YP_003871552.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681] gi|305859226|gb|ADM71014.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681] Length = 1339 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 129/856 (15%), Positives = 264/856 (30%), Gaps = 112/856 (13%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERF 66 I D S + + +M+ G P + L Q +TQ + Sbjct: 230 SILADAALSLRGAASLLEQAHETAMQPGGPAPYAVTLQEDAAMVKGLLQELETQPWASLY 289 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 + + +K+ + ++ L+E KK + + A+ Sbjct: 290 DHFQAAAFGKLKPVKKDQTEPALQERVKTLREAAKKMITDMKASLFGRRAEAYLEELHAA 349 Query: 127 LTLAKYLNA-------HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR------YKI 173 L L +++ K+ ++DF DL +L+ D + + + Sbjct: 350 APLMDELVETVIVFGERFQQHKQSKGLVDFGDLEHYCLKILRHPDSTPYKLLPSDAALEY 409 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 + + +L+DE QDT+ +Q +++R ++ + P F VGD KQSIY F AE Sbjct: 410 KAQFDEVLLDEYQDTNTVQEDIVRLVSRE---------EPGNRFMVGDVKQSIYRFRLAE 460 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDS 291 P Q+ + + +I+L +FRS +++ V+ VF + + D Sbjct: 461 PGL---FLNKYQRYSMQEQEDGFLIDLARNFRSRQEVVDAVNLVFRQIMSVDVAEIEYDE 517 Query: 292 TTTIRHRSSRIGQVG-------TVQLWEQV-------VSQHDSQCNPQQESWTSYFDSLP 337 + H +S +L + S+ + S L Sbjct: 518 RAWLVHGASYPDPSDQDAASVYAPELLLVDKGGQGLSEASELSETGDESALQESELAELA 577 Query: 338 QESSASILARRIAYTISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391 + +A + AR IA I + G R DI++L+R + Sbjct: 578 ELETAQLEARAIAQRIKELTGDTGQPLLIYDRGLKAMRPAVYGDIVILLRS---ASVWAP 634 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 L I G ++ +++L I + + D+ +L+SP+ +ED Sbjct: 635 LIVEELRLEGIPASGEQTTGFFKATEVEVMLSLLHIIDNPQQDIPLASVLRSPIVGLTED 694 Query: 452 DIFKICTQRHETETVYEYIQKFANCGIS-------------------------------- 479 ++ +I ++ + + + Sbjct: 695 ELAQIRLEKPDGLFYGALLAAAEADPLEESEKGISAEIMELDLFPKDSFSSSDFGNRNDG 754 Query: 480 -----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFL 533 + + ++ + A+ S +L G++ + L Sbjct: 755 NTLSARLRSFLRNLEAWRQEARQGSLSALIWNVLEETGYLDWVGGLPGGSQRQNNLRALY 814 Query: 534 NFTLRNEQN-SYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 + + E + S L ++ + + + VRIMT+H +KGLE P+ Sbjct: 815 DRARQYETSTSNRGLFRFLAFISRLRERGGDLGSISGGTEPDQAVRIMTIHKSKGLEFPI 874 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF+ T + L P + + + + E Sbjct: 875 VFIAGTAKMFNQQDLNAPFLMHKELGFGPKYVEEQNRVSYPTLPNLAIRRRSQLELLAEE 934 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 R+LYV +TR ++LI+ + + + + + + Sbjct: 935 MRVLYVALTRPREKLIMTGTVKDLASRAAGWARAKEHTEIVLPDYMLAAGRSYLDWVGSA 994 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTK 765 + L RE Q ++ + I L+ S + D + Sbjct: 995 LIRHP--------SATLLREAAGDQDGYYHRLEHMPGTDWLFKIVASETLSGSRVNSDHE 1046 Query: 766 GKTNLESLLSDNQTFN 781 + + E + Sbjct: 1047 EEVSGEERQKKTEALR 1062 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 34/368 (9%), Positives = 101/368 (27%), Gaps = 38/368 (10%) Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 ++ + + + S + + L++ Y+RL ++ T +++ Sbjct: 973 EIVLPDYMLAAGRSYLDWVGSALIRHPSATLLREAAGDQDGYYHRLEHMPGTDWLFKIVA 1032 Query: 665 CKHSNTSN-EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 + + S + + + + L D A W+ + Sbjct: 1033 SETLSGSRVNSDHEEEVSGEERQKKTEALRNAELVDLNEESETDIEAALSWTYPYERAGK 1092 Query: 724 LEREETIKQLMDEQKIP-----KKLFSPIKNDINEPYILNPSTIDTKG---KTNLESLLS 775 ++ ++ ++ L P S + Sbjct: 1093 TAANTSVTEMKRWLEMQEMGSDDWLNLSTSLLAELPEDQEDSHTGGSQLHLRRPKFMGNQ 1152 Query: 776 DNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 RG + H L+ + + + + L I R Sbjct: 1153 RLTPTERGTVYHTLMLHLPLDGGMSAEVIEETKARLLNQRM-LLDVHAKALDTDKILRFF 1211 Query: 833 ENPMMTTAMSC-DSYSEVSVSGKINC-----------------------PKKDIIISGRI 868 + + + + E+ + + ++++G I Sbjct: 1212 TSELGSRMLGASHVQRELPFTYTMRAADYWNHSLPSVLPGQETDSEVGQDGDKVLMNGII 1271 Query: 869 DQISISQQNIFIFEYKTHHHVP-QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927 D + + + + + +YKT + + H+ + QL +Y +++++ K L ++ Sbjct: 1272 DCLFETPEGLVLVDYKTDRISEYRTLSHLTDQYRFQLELYARVIEEITGKKVAEKWLYFL 1331 Query: 928 SEPKVFII 935 + + Sbjct: 1332 EAGESVRL 1339 >gi|269128418|ref|YP_003301788.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183] gi|268313376|gb|ACY99750.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183] Length = 768 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 117/760 (15%), Positives = 216/760 (28%), Gaps = 159/760 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + L V + ++ Q L Sbjct: 34 GAGSGKTRVLTHRIAYLLAERDVHPAQILAITFTNKAAGEMRERVQALVGPRSGAMWVMT 93 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM------ 119 F L ++ I + ++L + + R K Sbjct: 94 FHSACVRILRREARRLGFPSNFSIYDAAD--AQRLMALVCRELDLDPRRYPPKSFSAQVS 151 Query: 120 -------------FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 +++ Y+ ++ +DF+DLI+ T LL+ + Sbjct: 152 NLKNELIDYEAFKARASTHLEQKLAEAYEMYQARLQQAGAMDFDDLIMTTVHLLQAFPEA 211 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 A + HIL+DE QDT+ Q+E++R LTE P L VGD QSI Sbjct: 212 A---EHYRRRFRHILVDEYQDTNHAQYELVRLLTE----SPGEDVGPAELCVVGDADQSI 264 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA + +L +R + I L ++RST IL+ + V + + Sbjct: 265 YAFRGATIRNILEFERDFP--------DATTILLEQNYRSTQTILSAANAVIERNAHRKP 316 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 S Q ++ + + A Sbjct: 317 KRLWS----------------------------DQGEGEKIVGYVADNEHDE-------A 341 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A + + + + D+ V R + + + + Sbjct: 342 AFVAAEVDRLTDAG---------LARPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKV 388 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 + ++DL+A R + + D +S +L P + + E T Sbjct: 389 VGGVRFYERKEVRDLLAYLRVLANPADTVSLRRILNVPRRGIGDRAEACVEAHAARERIT 448 Query: 466 VYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 +E ++ A + + + +L A +P + +L + + Sbjct: 449 FWEALRTPEQVPGMAPRSAKAVREFVALMDDLRERAATATPAELIEAVLTETGYLAELQN 508 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN------------------SYSSLQELISELEQYP 558 + I+ L E E + L + + ++ Sbjct: 509 SRDPQDETRIENLRELEAVAREFEDRLAERVPAAEEEEEEAPSGAAGRLVDFLEQISLVA 568 Query: 559 PTIKRA-------------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 V +MT+HTAKGLE PVVFL VF H Sbjct: 569 DADAIPGTKGAPIPPGERAPEDEQGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPH----- 623 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 L EE RL YVG+TRA +L + Sbjct: 624 -----------------------------LRAMSNPQELEEERRLAYVGITRARQRLYLT 654 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 + S + + + + ++ + Sbjct: 655 RAVMRSAWGAPQVNPASRFLSEVPSSLVKWEREAAMPAPG 694 >gi|327451777|gb|EGE98431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA2] Length = 810 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|325498396|gb|EGC96255.1| exonuclease V subunit beta [Escherichia fergusonii ECD227] Length = 1173 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 126/878 (14%), Positives = 266/878 (30%), Gaps = 129/878 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + D+ + L + K++ L F+D++ + L+ Sbjct: 296 RHPLFDAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDAALR-S 354 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + L +GD K Sbjct: 355 ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HQQPETALLLIGDPK 406 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 407 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 456 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ G V + + P + W + S Sbjct: 457 AFMFREIPFVPVKSAGKNRGLHFAV----------NGEKQPAMKMWLMDGEYCSVGDYQS 506 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 507 TMAQVCAMQIRDWLQAGQRGDALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLL-- 564 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + T Sbjct: 565 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMTPEREDTLRSALATSMMGLNALDIENLNT 623 Query: 459 QRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 ET ++ + + + ++ V+ + L S + +L G ++ Sbjct: 624 ----NETAWDAVVEEFDGYRQLWRKRGVMPMLRAL------MSARNIAENLLATAGGERR 673 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 674 LTDIL------HISELLQQAGTQLESEHALVRWLSQHILEPDSNAASQQMRLESDKHLVQ 727 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + + ++ + Sbjct: 728 IVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------QSFEAMLDLSEAK 774 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + ++ + E RLLYV +TR+ L + +KK + Sbjct: 775 ESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSALGRLLQK 834 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPEN------TPLEREETIKQLMDEQKIPKKLFS 745 E L I T + EE + + + Sbjct: 835 GEPQDAAGLRACIESLCDDDITCQTPPRPDNIRWHMVESASEELSARNLQRSPGDNWRVT 894 Query: 746 PIK------------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793 + + K + + + + G +H L + + Sbjct: 895 SYSGLQQRGHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASPGTFLHSLFETL 954 Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVS 850 + W + +I R N ++ D E+ Sbjct: 955 DFSQPVDSAWVREKLELDGFETWWEPVLTEWIDAILRAPLNETGISLSQLTERDKQVEME 1014 Query: 851 VSG--------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYK 884 ++ + ++ G ID + Q ++ +YK Sbjct: 1015 FYLPITKPLIASQLDTLIRQFDSLSAGCPPLDFLQVRGMLKGFIDLVFRHQGRYYLLDYK 1074 Query: 885 THHHVPQEIEHIPY---------THIAQLSIYEKILKD 913 ++ + + Q +Y L Sbjct: 1075 SNWLGEDSSAYTQQAMAAAMQEHRYDLQYQLYTLALHR 1112 >gi|326317369|ref|YP_004235041.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374205|gb|ADX46474.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1182 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 145/960 (15%), Positives = 309/960 (32%), Gaps = 94/960 (9%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSM-ETGNPTILKKAQTL-QQASQTQCIEERFSLLSS 71 + L + ++ T K A + T +EER L Sbjct: 243 AGLEHPAQALAAEDCRARWLAWAAALGSESGKTPQKAADAIVTAFCDTTDLEERLEALRG 302 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 + + + ++ ++ R + + + L + Sbjct: 303 ALFVAREDRLTRHLEK------FAAAQEAERELQALCLARRQHEAWLHQQR---MARLTR 353 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A + K+ +D D+ +L +S W++ ++D + H+LIDE QDT+ + Sbjct: 354 ALVAAFGALKRDRGWVDMNDVERTALVMLSDPVLSGWVQERLDARVRHLLIDEFQDTNPL 413 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 QW+ + + + G P ++F VGD KQSIY F AEP+ + Sbjct: 414 QWQALHAWLASYV-GTGGGQHPPSVFIVGDPKQSIYRFRRAEPQVFRAAQ-----AFVRQ 467 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 G ++ + R+ +++ V+ V + + H + G ++L Sbjct: 468 GMGGDLLACDHTRRNAPEVIAAVNAVMGAAQAQGDYAGFRD----HTTESRDAGGLLRLP 523 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + D + + + + + Sbjct: 524 PIEDAADDDENEAGGPDARPDRLAWRDSLVQPRHEAEETLRMRECQQAARWVAGQIAAGV 583 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 A+ I+VL RKR + R L + V ++ L + ++D++AL ++S Sbjct: 584 PARQIMVLARKRDRLSALQDALRDL----HLPCVQPEKVELCEAPEVQDVVALLDVLVSP 639 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------ 479 DLS L+SPLF + + ++ R + E + Sbjct: 640 GHDLSLARALRSPLFGMDDALLVRVAVARRDAERGAARGLQEGGVPGWLELLADRALLDA 699 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNF 535 + + + H + PHD I + ++ + + V+ L L+ Sbjct: 700 EMPGLSHDLRLYRHWVEQWPPHDALDAIYRHRDVLARYAAASPAPLRSGVLANLRALLSA 759 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L+ + Y + + L++ A + VR++T+H AKGLE+ V L+DT Sbjct: 760 ALQQDGGRYLTPYAFVRALKRPGQRAPGRVDA--DAVRLLTIHGAKGLEADAVLLLDTDG 817 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + + + + P P +++ S +D + + Q E LYV M Sbjct: 818 RAQKAETMGVLVDWPGELPAPRRFVFLASEASPPPSAADALAAEQAERQREEINTLYVAM 877 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA L + +S +W++ V + + + + + Sbjct: 878 TRARHCLALSCVR----ASQSAPGSWWNRVAPLAADVPQDLSGPAGGAEDGLRAVVDAQL 933 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 P E + + + PST Sbjct: 934 PELPGWQDAPPLPMGPPPGAEAEAGAQAEAGAAVAGLPRERRAPSTP------------- 980 Query: 776 DNQTFNRGLIIHKLLQVI---------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826 +G +H+LL+ ++ + P + + + Sbjct: 981 ---ASRQGEAMHQLLEQAGLAGRLRGGAAGSSAGWPRARLLQLARDFE-LPPELAERAAV 1036 Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG---RIDQISI----SQQNIF 879 R+L+ S D ++ + I+ G RID++ + + Sbjct: 1037 MAARILQGEGAWAWNSAD--------IELAMDEAPIVHRGQTLRIDRLVRRSTGGRGEWW 1088 Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939 + +YK+ + ++ E + Q+ Y + ++ +P + + + + ++ + + Sbjct: 1089 VLDYKSAANPERQAELV-----EQMRRYRQAVQGQFPGEPVRAAFL-TGDGRMVEVDSSA 1142 >gi|163857120|ref|YP_001631418.1| DNA helicase II [Bordetella petrii DSM 12804] gi|163260848|emb|CAP43150.1| DNA helicase II [Bordetella petrii] Length = 752 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 103/661 (15%), Positives = 209/661 (31%), Gaps = 131/661 (19%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + T + K ++ + Q ++ Sbjct: 93 LRAHHRDAGLPQTFQILDT---TDQLAAIKRLLKANGIDDEKYPP---RDVQRFINGAKE 146 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ + + YE ++ V+DF +L++ +LL + A +R Sbjct: 147 DGLRPGDVEAHDSHRRRLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 203 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+ +Q++ +R L ++FAVGD+ QSIY+F GA Sbjct: 204 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGASIFAVGDDDQSIYAFRGA 253 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R + ++I L ++RS IL + + G + Sbjct: 254 NVGNMADFEREYAR--------GTVIRLEQNYRSYGHILDSANALIGHNSGRLGKN---- 301 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + D + A+ + Sbjct: 302 -----------------LW------TEQGEGEPVRVIEQPSDGIE--------AQWLVDE 330 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++I ++ ++I VL R + ++ I Sbjct: 331 VRSLINEGSLR----------REIAVLYRSNAQSRVLEHAL----FSAGIPYKVYGGLRF 376 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + IK +A R + + +DD S++ ++ P + ++ R + +++ + Sbjct: 377 FERQEIKHALAYLRLMANPDDDTSWMRVVNFPTRGIGARTLEQLTDAARAQDTSLFGAVA 436 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + A G + + I + H + + +L A + R G E ++ L+ Sbjct: 437 RVAGKGGANLAQFAQLIGRMAHDTRDLPLPELVEHMLDASGLVAHYKTEREGAERLENLN 496 Query: 531 EFLNFTLRNEQNS------------------YSSLQ-ELISELEQYPPTIKRAHSANHNE 571 E + L A + Sbjct: 497 ELITAAAVFASEENFDGLPAGRVPDLGADVPPDGLTPLAAFLAHAALEAGDNQAQAGQDA 556 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MTVH AKGLE VF+ +F H++ Sbjct: 557 VQLMTVHAAKGLEFDAVFITGLEEGLFPHENSLLEP------------------------ 592 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + EE RL+YV +TRA +L + + ++ + + Sbjct: 593 ----------AGLEEERRLMYVAITRARQRLYLSLAQSRMLHGQTRYAMRSRFLDEIPEQ 642 Query: 692 D 692 Sbjct: 643 H 643 >gi|119475194|ref|ZP_01615547.1| DNA helicase II [marine gamma proteobacterium HTCC2143] gi|119451397|gb|EAW32630.1| DNA helicase II [marine gamma proteobacterium HTCC2143] Length = 725 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 120/728 (16%), Positives = 230/728 (31%), Gaps = 141/728 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + +S + + + L +S + R Sbjct: 30 GAGSGKTRVLVHRIAWLIQAEGLSPFSILSVTFTNKAAKEMRARIDELLGSSASGLGAPR 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE-----KLKKSQDEFIKIRDRF------ 114 + F K Q ++ + + +L K + + Sbjct: 90 -GMWVGTFHGIAHRLLKAHWKQAGLPQNFQILDSDDQLRLVKRIHREFDLDESRWPPRQS 148 Query: 115 ------------NTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 + + + YE+A + V+DF +L++ ++L Sbjct: 149 QWFINGQKDEGKRAAHIEDYGKDLNHSTMLRVYLAYEQACDRQGVVDFAELLLRAHELWL 208 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 K+ I + HIL+DE QDT+ IQ+ +R L + AVGD Sbjct: 209 KQPA---ILQHYQERFKHILVDEFQDTNTIQYAWLRVLAG----------KNIPVVAVGD 255 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GA+ + + + + I+ L ++RST+ IL + V Sbjct: 256 DDQSIYGWRGAKIENIQQYSKDFPN--------TQIVRLEQNYRSTSTILNAANAVIDNN 307 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 + G +LW + S + F+ + Sbjct: 308 TDRLGK---------------------ELW-------TDGGEGELISVYAGFNEQDE--- 336 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR I I + S+ +L R + ++ Sbjct: 337 ----ARFIVERIEEWVKDGHDRSSS----------AILYRSNAQSRVLEEAM----IRGG 378 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 I D L IK+ +A R +++DD + ++ +P I I R Sbjct: 379 IPYRIYGGQRFYDRLEIKNALAYMRLTNNRDDDTATERVINTPTRGIGSKTIEVIRAYAR 438 Query: 461 HETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 ++++ N S Q I+ I + + + ++ A Sbjct: 439 EHNQSLWRAAVNIIDNKLLPNRASSALQGFIEMIDVMDKNTDDVTLEELADHVVNASGLI 498 Query: 515 Q---QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHN 570 + + G I+ L E + + E + + + L L+ ++ + Sbjct: 499 EFHKKEKGEKGQARIENLQELVVAARQFESSDEA-ISPLQEFLDSAALDAGEQQADEFED 557 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V++MT+H+AKGLE P+VFLV +F HK Sbjct: 558 SVQLMTLHSAKGLEFPLVFLVGMEENLFPHKMS--------------------------- 590 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 + EE RL YVG+TRA ++L I + N + + + Sbjct: 591 -------MEESGRLEEERRLCYVGITRAMEKLYITYAESRRMYGNENYNSPSRFIREIPQ 643 Query: 691 NDERVKKI 698 + ++ Sbjct: 644 ELMQEVRL 651 >gi|269962274|ref|ZP_06176626.1| DNA helicase II [Vibrio harveyi 1DA3] gi|269832977|gb|EEZ87084.1| DNA helicase II [Vibrio harveyi 1DA3] Length = 724 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 179/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 311 -------TDGVVGEPISIYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R I ++ Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLIANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R T++E A Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ + L H ++ + G + I+ L+E + T + E+ Sbjct: 463 IELVTALEDDTIEMPLHHQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 523 PEEAEDMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHS 668 +L I Sbjct: 609 QKLYITYAE 617 >gi|92117527|ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91800421|gb|ABE62796.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] Length = 1110 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 157/927 (16%), Positives = 293/927 (31%), Gaps = 92/927 (9%) Query: 31 INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN 90 + + +++ G + L A E F+ + T + + Sbjct: 241 LGEIIAIFQGHGLAVPIPSNAALVAALGFHRHETCFTQDGKRRQLRASTKWQEAAAKAGR 300 Query: 91 KKS--PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 K+ E L D + L L + K+ +LD Sbjct: 301 PKAAGKMASEALVLRYDACHGAISTLIGAVSRELLLRLCNEMAQLREDWRGYKRAAALLD 360 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK- 207 F+DL+ DLL A +R + + H+L+DE QDT +Q E++ L D G+ Sbjct: 361 FDDLLYKARDLLAND---AEVRNALSKRFRHVLVDEFQDTDPLQTEILWLLCGDDSAGEP 417 Query: 208 -NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 + P LF VGD KQ+IY F GA+ + A A S++++ +FRS Sbjct: 418 LSRPLRPGALFLVGDPKQAIYRFRGADVNAYIA--------ARAAIAPGSLLKITANFRS 469 Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326 IL V+K F S GQ G +L + D Sbjct: 470 VEPILAFVNKKFEHV----------------LSESAGQPGFSELSPIHPASADPAVVAL- 512 Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK--RVIQAKDILVLVRKRK 384 T + + A +A + G + + R + DI +L Sbjct: 513 -DVTVNEEKPSAGAMRDAEALAVADLCGRLAGNMMVRDHHTNELRKCRFGDIALLAPVGT 571 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + L I V I+DL+AL + D L+ L+ P Sbjct: 572 ELWRFEEALEDL----GIPVSTQAGKGFFRRQEIQDLVALTCALADPRDSLALGAFLRGP 627 Query: 445 LFNFSEDDIFKICT------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498 + +E ++ I + + + + I+ + L + Sbjct: 628 MVGLTETELLDIAEQLPSDPDQPNQLPMLSLRTDPDQIANATASNAIRILAFLRNRGGKT 687 Query: 499 SPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 +P+ + + A R Q RF + +D FL + L+ ++ Sbjct: 688 TPYSLLSDAVAALHVRPQLRQRFKEGTERAVANVDLFLELARAYD---VRGLRAFARDMR 744 Query: 556 QYPPTIKRAHSANHNE----VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 R + + ++TVH+AKGLE VV ++ + S + Sbjct: 745 ANWEETVRQVEGRPDAEEQSISLITVHSAKGLEWSVVIPLNMTGKPQSESGL-------- 796 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 D IP + + + E RL YV TRA D LI+ Sbjct: 797 AYDRSSNRFSIPVLGNDPPDYDGIKSKNVVESARERVRLWYVATTRARDLLIL-----PR 851 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731 + K + +W +V + L + A S + + + E + Sbjct: 852 HSAKLAEDSWTRIVELGLEHLPA-----LDGAALGAPGQAPAKSGENLQTREIFAAEASR 906 Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 L D + + + S + D ++ + + + ++ + RG+I+HKL++ Sbjct: 907 ILADRKAVTWRRPSRAELDPHQSGNVEAAVASEAVEIPPSVVVGSST---RGVILHKLIE 963 Query: 792 VIFTLPEHKRKNFIT----SYCTKNAKLWPAKEY-----KNLLLSITRLLENPMMTTAMS 842 I + + T+ L ++ R L + Sbjct: 964 EILSGETQDTLERLEIRAGELLTQIGSGAAQNTQAGISPAELSATVMRTLALSEIKEL-R 1022 Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI--FIFEYKTHHHVP----QEIEHI 896 +E+ V G + +ISG D +++ + + ++K+ Sbjct: 1023 HRLVAELPVFGCSITVDGETLISGLADAVALDESGAIDVVIDWKSDVAPDVAALDHYRQQ 1082 Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCL 923 + Q++ ++ K + Sbjct: 1083 IGDYRKQMNAKRALVVLMTSGKVIEVA 1109 >gi|227872193|ref|ZP_03990560.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium sinus F0268] gi|227841976|gb|EEJ52239.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium sinus F0268] Length = 1283 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 160/1116 (14%), Positives = 333/1116 (29%), Gaps = 229/1116 (20%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEE 64 + +Y D+ + + L E P + L + + Sbjct: 204 EKDLYIDMKSRLENLSLLYEEALDLCREPNGPIEYEERILEERDQCLALSNTDSLEELVR 263 Query: 65 RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124 LS L K ++ + + ++ + +++ + + K K L Sbjct: 264 GLENLSFGRLKSTKAEGKELV-KSLRERGKKTLKTWQENYRLLPEELEEEVEEKGQKRIL 322 Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR--------------------- 163 + L HY++ K++ VLDF DL LL K Sbjct: 323 ELVRLCLLFLEHYQKEKEERAVLDFSDLEHFALKLLYKDGEDKSIEEEAEIEAEEEIGAD 382 Query: 164 -----------------------DVSAWIRYKIDQEINH-------------ILIDEVQD 187 D + I +Q++ + IL+DE QD Sbjct: 383 AKIEEETKIEADAETEHEIEVGKDGAKEIARGKEQKVRYSALADELAKSYREILVDEYQD 442 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 ++L+Q ++R+L+++ +F VGD KQSIY F A P+ L + Sbjct: 443 SNLVQEYIVRALSQE-------RFGRPNVFQVGDVKQSIYRFRMARPELFLEKYHD---- 491 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV 305 + + I L +FRS +L+ V+ +F G+ D ++ R + Sbjct: 492 -----ESYPKIFLRKNFRSDEGVLSAVNALFFRIMKKAFGGIEYDLENSLFLGKGRTEEA 546 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES------------------------- 340 + + D E + F + Sbjct: 547 RQEEESITGKQRRDQTELLLLELEKTAFTGEEGDEGEDSKEESNSSSNSSSDGASNSSSG 606 Query: 341 ----SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + + IA + ++ KD+++L+R ++ + Sbjct: 607 KSLSKLELECKMIAAKVRELLEKG----------YAYKDMVILLRSPHG---VSREMVDI 653 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 I + + ++ +++ I + D+ +L+SPLF+FS++++ +I Sbjct: 654 FGKEGIPAYAELKTGYYSAVEVETVLSFLAIIDNPRQDIPMAAVLRSPLFSFSDEELGEI 713 Query: 457 CTQRHET-------------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503 + + + K+Q+ + +++ H Sbjct: 714 VLAKGGLYEKPYDKSKENAVNLSLQAEKALTPALEEKWQNFQNKLERYRRLSRSLRLHSL 773 Query: 504 FTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562 +LI + G + LD+ L + E+ SYS L I +E+ + Sbjct: 774 LSLIYEETDYYNYVRALPLGEKRQANLDQLLEDAKQFEKGSYSGLFHFIRYIEKVKKQEQ 833 Query: 563 RAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + +RIM++H +KGL+ VVFL KM + L Sbjct: 834 DQGEATVFSEKDDLLRIMSIHHSKGLQFKVVFLSQLHKTFNKMDSKAKMLMDAELGLAAD 893 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + K + + + ++ + E R+LYV MTRA ++LI+ + Sbjct: 894 YLDLETRIKYPSLHKIAIKEKGERESLGEELRVLYVAMTRAEEKLILTAVCKNEEDLIKK 953 Query: 678 QR--------------------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 ++++ + K L + K A Sbjct: 954 FPVQDRLSLEDIRGATSYLAWICMAYSKSFFESTKTGEIALRFLSKEDLEENEGKAMGEA 1013 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 E ERE+T + + E+ P + + + S + K Sbjct: 1014 ISLEKKLYEFLGKEREKTEAEKLMEEHFS--YVYPYEKSTHRSPKYSVSLLKMKAMEEHG 1071 Query: 772 SLLSDNQTFNR---GLIIHKLLQVIFTLPEHKRK-------------------------N 803 L + G + + E +++ + Sbjct: 1072 EKLGEQLGTEIEQEGRAV--APEWDEGKAEARQQAKDKSDSPLIRKMKAEGKNIGAAIGD 1129 Query: 804 FITSYCTKNAKLWPAKEYKNLL----------LSITRLLENPMMT----TAMSCDSYSEV 849 + + L + + L++P+ Y E Sbjct: 1130 SYHHALAFYDYFKDISQLSDFLSPEEYGLLNQEKLQKFLDSPLGQLFAKAYKENTLYREQ 1189 Query: 850 SVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899 ++ + +I+ G ID + ++ I + +YKT ++ + Sbjct: 1190 HFMQEVEYEKLFPEDGGDTVEKVILQGIIDAFIMEEEGIILVDYKTDRV--KDGAELRNR 1247 Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 + Q+ +Y + L+ K +L S + + Sbjct: 1248 YQKQIDLYSEALEQILGKKVKRRVLYSFSLGEEVDL 1283 >gi|189346089|ref|YP_001942618.1| UvrD/REP helicase [Chlorobium limicola DSM 245] gi|189340236|gb|ACD89639.1| UvrD/REP helicase [Chlorobium limicola DSM 245] Length = 741 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 107/628 (17%), Positives = 209/628 (33%), Gaps = 121/628 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y ++N LDF+DL+I +L + + + ++ + +ILIDE QDT+ Sbjct: 170 AAKVYELYTRKLRENNALDFDDLLIKPLELFRAHEA---VLGELQETFRYILIDEYQDTN 226 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + L + R +F VGD+ QSIYS+ GA+ +L + Q Sbjct: 227 RAQYLAAKML----------GAKHRNIFVVGDDAQSIYSWRGADITNILNFQDDYQ---- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +L ++RST IL + V S Sbjct: 273 ----DSQTFKLVENYRSTGTILQAANSVIRNNHRQIKKDLIS------------------ 310 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 ++ + + ++ + ++ I +M D Sbjct: 311 ----------NRSAGEPVTLIEAYNERQEG-------EKVVEHIRSMRQKD--------- 344 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 V R + ++ + R +I IKD +A RFI+ Sbjct: 345 GHDYSGFAVFYRTNAQSRVLEDVMR----QNRIPYRIFGSVSFYKRKEIKDAVAYLRFIV 400 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQH 483 ++ D+ S + ++ P + I K+ + ++Y+ I+ A ++ + Sbjct: 401 NERDNESLLRIINFPPRKIGDVSIAKLKEYAVLQDVSLYDAIRNAAEGGFQQRLVNALES 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I +L ++++ S +D + + Q + E D L E L+ Sbjct: 461 FSSVIEQLRELSEYGSVYDVLSELYSLTAIPAQLQAENTAESLARYDNLQELLSMARDFS 520 Query: 541 QNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 ++ S L LE + + N V +MTVH +KGLE PVVF+ ++F Sbjct: 521 DHNPDS-SSLGDFLENISLASDYDETRESDNYVSLMTVHASKGLEFPVVFITGMEERLFP 579 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL YV MTRA Sbjct: 580 ------------------------------------LSTYEQDELEEERRLFYVAMTRAQ 603 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 +++ + + + F + ++ + + E ++ Sbjct: 604 EKIFLSWAR-----SRYQYGQPQQCLRSMFVTEIDASIVRTESGELLSVRGSSERASSAG 658 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPI 747 + + + + + P++ P Sbjct: 659 SSPARGVQPRVPSPQNGIQAPRQESKPA 686 >gi|330998558|ref|ZP_08322378.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] gi|329568156|gb|EGG49975.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] Length = 819 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 103/663 (15%), Positives = 201/663 (30%), Gaps = 121/663 (18%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + N +M A + + + Y ++ V+DF+DL++ T LLK+ Sbjct: 158 LPEAYLSDNAVRMADQ-AAKIPMTGEIYLRYMSRLRQADVMDFDDLLLYTYILLKEHPE- 215 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + + +L+DE QDT+ Q ++ LT+ + + VGD+ QSI Sbjct: 216 --VCGRYADKFDFVLVDEYQDTNYAQHCIVWELTQ----------KKQQVCVVGDDAQSI 263 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 YSF GA +L + + +L ++RST I++ + + S + Sbjct: 264 YSFRGANIDNILNFTQKYNN--------AKLFKLEQNYRSTKTIVSAANSLISHNDRQIP 315 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 S D + +++Y D A Sbjct: 316 KDVFS---------------------------DKEKGSPLHVYSAYSDIEE--------A 340 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I+ + + + +G +L R + R + Sbjct: 341 EIVVNQIAALRRKEKMEYDG---------FAILYRTNAQSRTFEEALR----KRGMPYRI 387 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465 IKD++A R ++ D+ +F ++ P + + KI + + + Sbjct: 388 YGGLSFYQRKEIKDVIAYCRLAVNPHDEEAFKRVINYPARGIGQTTVDKIVSVASTDGVS 447 Query: 466 VYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++E + + + K + I I + I+ ++ Sbjct: 448 LWEVVSRPEEHSLPVNKGTMGKLKSFTDIISGFIEETEQMDAVFLTQEIIRESGIMREIF 507 Query: 519 SRFGNE---VIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRAHSANHN 570 E + + E LN E+ + L + + E+ + H Sbjct: 508 QDMSPEGMSRQENVQELLNGVQEFVSRRLEEGQSTGLSDFLQEVSLLSDLDEDESDEQH- 566 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V +MT+H+AKGLE PVVF+V +F Sbjct: 567 KVTLMTIHSAKGLEFPVVFIVGMEENLFPSPMAGNS------------------------ 602 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 + EE RL YV +TRA + + K+ ++D Sbjct: 603 ----------QRALEEERRLFYVAITRAERYCYLSFARSRYRFGKTEFSNPSRFLHDIDP 652 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 + + + L + + DE Sbjct: 653 RYVEMDAQDGFSFGQTRRRKFASERAQTELRSSLPSVSKLCKYEDEDDYGTSYRERHHRA 712 Query: 751 INE 753 E Sbjct: 713 YGE 715 >gi|314982168|gb|EFT26261.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA3] gi|315090399|gb|EFT62375.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA4] Length = 810 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 99/633 (15%), Positives = 194/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYAEYQRRLRAANALDFDDLIMYTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVEQGKRADEIASSILKESGYITELENSKDPQDETRLENLIELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLESSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPERLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|241759542|ref|ZP_04757645.1| DNA helicase II [Neisseria flavescens SK114] gi|241320099|gb|EER56460.1| DNA helicase II [Neisseria flavescens SK114] Length = 735 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 100/582 (17%), Positives = 192/582 (32%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + + +FAVG Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMNEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I + +I VL R + +I Sbjct: 333 -----AQFIVDETKALERDGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P I + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 E A +K ++ I L + + IL + + ++ Sbjct: 434 SEQGITLWQAACNAGAKAAKVAAFVRLIEALRNQVGQMPLPEIIVGILKDSGLTEHYETQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ +L E +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A +++MTVH AKGLE VFL F + Sbjct: 554 AGEKAIQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii ATCC 33806] gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii ATCC 33806] Length = 894 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 114/737 (15%), Positives = 214/737 (29%), Gaps = 152/737 (20%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTL-ASLTLAKY 132 +I +++ + +L + ++ D +T Sbjct: 207 DDSKRLLGMIAKDLQINAQKFPPRLLAAAISALKTELTDPDAASDEAAATRNPFDRTIAE 266 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+ + LDF+DLI T + I + H+LIDE QDT+ Q Sbjct: 267 VYTEYQRRLRAANALDFDDLIGETVRVFTTHPE---IAAYYRKRFRHVLIDEYQDTNHAQ 323 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +I +L S L VGD QSIY+F GA + + +R + Sbjct: 324 YVLISTLV-------GIGSDASELSVVGDSDQSIYAFRGATIRNIEEFERDYPQ------ 370 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL+ + V S + LW Sbjct: 371 --ARTILLEQNYRSTQNILSAANAVISHNHGRREKK---------------------LW- 406 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + + AR IA I + T + Sbjct: 407 ------TDHGAGAKITGYVADNEHDE-------ARFIATEIDALFDTG----------VG 443 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 DI V+ R + I + I + I+DL+A R + + Sbjct: 444 YGDIAVMYRTNNSSRAIEEVF----IRTGIPYKVVGGTRFYERKEIRDLIAYLRVLDNPT 499 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKF--------QH 483 D++S ++ +P + I + + + + + A+ ++ Sbjct: 500 DEISLRRIINTPRRGIGDRAIATVNLYAENFGMSFADALVDAAHGKVTALGTRAKNAIAA 559 Query: 484 VIKYIHELIHIAQFCS--------PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 ++ + L A + + IL A + + + + +D L+E Sbjct: 560 FLELMDGLRADAAEATNAITGLPDIGVVVSRILDATGYKAELEASTDPQDGARLDNLNEL 619 Query: 533 LNFTLRNEQN---------------------------SYSSLQELISELEQYPPTIKRAH 565 ++ S+ + ++ + + Sbjct: 620 VSVAREFSSEAANLMAYAAMGAGVEGNDPAEPMVGEPQPGSIHAFLEKVSLVADSDQLPD 679 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + N V +MT+HTAKGLE PVVFL+ F H Sbjct: 680 DS-TNVVTLMTLHTAKGLEFPVVFLIGWEDGQFPH------------------------- 713 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 L E RL YVG+TRA + L + + ++ + + Sbjct: 714 ---------LRALGDPQELAEERRLAYVGITRARETLYLTRAMLRASWGNAVANPASRFL 764 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 D ++ + D+W A W + + Sbjct: 765 EDIPEKLMYWRREEPGAGGWDDDWGASGWGGGSFVAGYGGYGGYGGSGGYSGRKSGGSYR 824 Query: 746 PIKNDINEPYILNPSTI 762 K + + + Sbjct: 825 KPKTPRSSRSSTPAANL 841 >gi|72160928|ref|YP_288585.1| DNA helicase [Thermobifida fusca YX] gi|71914660|gb|AAZ54562.1| putative DNA helicase [Thermobifida fusca YX] Length = 1108 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 140/968 (14%), Positives = 270/968 (27%), Gaps = 169/968 (17%) Query: 95 DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 D++ ++ +++ + + L + + K + V+D+ D + Sbjct: 184 DVRAYGDWLRERAAQLKKTPALVRDLLAVQRHREQLLPLLEQFAQLKAEREVMDYSDQVA 243 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 + ++ I + +L+DE QDTS Q +++SL + Sbjct: 244 LAARIAQRHPEVGRI---ERERYAVVLLDEYQDTSHAQLVLLQSLFGN----------GH 290 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + AVGD QSIY + GA + R ++ + + +L SFR+ IL V Sbjct: 291 PVTAVGDPCQSIYGWRGASAGNLSRFPVDFPEK---PDRPAPVRQLSTSFRNGERILEVA 347 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 ++ A + + G V +++ +Q D Sbjct: 348 KRIAEPLRAA-----ARDVPVLYPGPARAGRGRVTCALLRTETEEAEWIAEQI------D 396 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 +ES+ A + + DI VL RKR P + R Sbjct: 397 RALRESAEHHTAP----------DGLPWPEQEHRGPLSYGDIAVLCRKRAQFP----VIR 442 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + I V L + ++D++A R + +L P + D+ Sbjct: 443 RALEERGIPVEVVGLGGLIEVPEVRDIVATLRVLHDPTAANELARILTGPRWRLGPRDLV 502 Query: 455 KICTQRHETETVYEY----------------------------------------IQKFA 474 + + E ++++ Sbjct: 503 ALNQRAKELAEEARRDLRGEAAEARVDEEDPLRQTVLDLTAEAGSLLDALDDLGPPERYS 562 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDF--FTLILGAKKGRQQFISRFGNEVIDVLDEF 532 G + Q + + + L P +LG R + LD F Sbjct: 563 ATGYQRLQALSEELRTLRTRISQPLPDLIMEVERVLGLDIEVGARPGRDQSAARADLDAF 622 Query: 533 LNFTLRNE-QNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPV 587 ++ +R +L ++ L T + N V++MTVH AKGL+ P+ Sbjct: 623 VDAAVRFSGSTDTPTLSAFLAYLTSAEDTEHGLEPGERVGSSNTVKLMTVHAAKGLQWPM 682 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN-----IVSDLIKHLKKS 642 V + F P S + + Sbjct: 683 VVIPGLSRGQFPGVPKTVKGWTGKAASLPFALRGDRDSLPELADVTVQEIKQFTAAERAR 742 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 E RL YV +TRA+ L+ H ++S + + + T+ Sbjct: 743 ELMEQRRLAYVAVTRAAFSLVCTGHWWGQETQRSRGPSEFLEEIREVCETGVGQVALWTD 802 Query: 703 SINKDEWIAYEWSTHHPENTP----------------------------------LEREE 728 ++ E + + P L R Sbjct: 803 PPDEGEPNPQLVADNSVVWPPQTDERRDAAERAAALVARYRNGEWERELALMNRALLRPA 862 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------- 779 +++ D + + L + P ++ D + L SL D Sbjct: 863 ANRRIRDWARDVELLLRHRDQEEGAPRVIEVELPDHLTVSALVSLARDPAALAQQIRRPL 922 Query: 780 -------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 RG H L+ + + P + + T Sbjct: 923 PRPPAPHARRGTAFHTWLE---------------RRFGQETLIDPHELPGAADETATGDA 967 Query: 833 ENPMMTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKTHH 887 + + ++ + V D ++ GR+D + + ++KT Sbjct: 968 DLDELQRQFEQSVWADRVPLEVEVPFETIIGDRLVRGRMDAVFHDPEDDVYEVVDWKTGR 1027 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNK-AF 944 E E QL+ Y P + + YV P++ L+ Sbjct: 1028 LPATERERRAAA--VQLAAYRVAWARIADIPLERVRAAFHYVRANVTV-YPEDLLDADGL 1084 Query: 945 AEISTKIP 952 A + +P Sbjct: 1085 AALIAAVP 1092 >gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] Length = 830 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 111/742 (14%), Positives = 216/742 (29%), Gaps = 152/742 (20%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF--L 74 + + P ++ NK + E + +A + ++ ++ L Sbjct: 74 ERGVTPGQILAITFTNKAAAEMRERVAALVGPRANAMWVSTFHSSCVRILRAQAALLPGL 133 Query: 75 TQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIR----------DRFNTYKMFKST 123 F+ + ++ + S DL+ K+ + + Sbjct: 134 NSNFSIYDSDDSRRLLTMISKDLELDTKRFSARLLATHISNLKNELVGPEEAVVAADQDP 193 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + HY++ + LDF+DLI T LL+ I + H+L+D Sbjct: 194 AELPRLIAKVYGHYQQRLRAANALDFDDLIGETVALLQ---AFPQIAEYYRRRFRHVLVD 250 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q+ ++R L + +P L VGD QSIY+F GA + + +R Sbjct: 251 EYQDTNHAQYMLVRELVGGAGE-SDHAVAPAELCVVGDADQSIYAFRGATIRNIEEFERD 309 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 I L ++RST +IL+ + V S + Sbjct: 310 YP--------DARTILLEQNYRSTQNILSAANSVISKNTGRREKR--------------- 346 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + + + A +A I ++ Sbjct: 347 ------LW-------TDSGEGELIVGYVADNEHDE-------ASFVASEIDRLVDQGET- 385 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + DI V R + + + + + ++D++A Sbjct: 386 --------KFADIAVFYRTNNSSRALEEIF----IRLGVPYKVVGGVRFYERKEVRDIVA 433 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK---------FA 474 R + +++D +S +L +P + + + + Sbjct: 434 YLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGKVALLN 493 Query: 475 NCGISKFQHVIKYIHELIHI-----AQFCSPHDF------FTLILGAKKGRQQFISRFGN 523 ++ + L + A P + +L R + + Sbjct: 494 TRSQKAIASFLEMMDGLRALLPTAAADEDEPFELGDIGEVAEAVLERTGYRAELAASSDP 553 Query: 524 E---VIDVLDEFLNFTLRNE--------------------QNSYSSLQELISELEQYPPT 560 + +D L+E ++ + L + LE+ Sbjct: 554 QDGARLDNLNELVSVAREFSSDARNAAGLIDPDDEETAAMREGEPDPGSLAAFLERVSLV 613 Query: 561 IKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 ++ V +MT+HTAKGLE PVVF+ F H Sbjct: 614 ADADQLPDSDDGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP----------- 662 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + E RL YVG+TRA +L + + S + Q Sbjct: 663 -----------------------AELSEERRLAYVGITRARQRLYLTRAIMRSAWGQPIQ 699 Query: 679 RTWYDMVYDSFHNDERVKKIKL 700 + + + ++ Sbjct: 700 NPASRFIQEIPEDLINWRREDP 721 >gi|149910376|ref|ZP_01899018.1| putative exodeoxyribonuclease V [Moritella sp. PE36] gi|149806524|gb|EDM66493.1| putative exodeoxyribonuclease V [Moritella sp. PE36] Length = 1190 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 133/992 (13%), Positives = 305/992 (30%), Gaps = 129/992 (13%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L++ G N E I K + + L + + +Q + Sbjct: 200 LRDISGYLSNTDIEFIAKTGSNDIEQDYDKLISSIQLVKDAWFKNASDLCELIQAGNLNG 259 Query: 61 CIEE--RFSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 + + L T++ +I+ + + K+ + + + Sbjct: 260 NSYRVASVAKWLNEMLSWSQSETKQNDLPDSIVKFAQHALTAKTKKGKQSPEHPVFSDIE 319 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + + +Y+ + K ++ +L F+DL+ + L + + + Sbjct: 320 TLLEQPLSLKDCFIVKAVEYVRVRVMKTKNQSQLLSFDDLLSGLSAALVG-EQAESLAEC 378 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 I + +IDE QDT Q+++ ++ + LF +GD KQ+IYSF GA Sbjct: 379 IRSQYPVAMIDEFQDTDQQQYDIFNTIYG--------NQDGAGLFMIGDPKQAIYSFRGA 430 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + ++ + T L ++RS+ +++ V++VF Sbjct: 431 DIFTYMQARENVDDHYT----------LAKNWRSSTAMVSAVNRVFEHA----NKPFIYE 476 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 +I + L V ++E + L Q+ A A +IA Sbjct: 477 DSISFQPVESQGKSKPLLLNGVEPAALQLWLHEEEGQKNITKGLYQQVYAKATANQIATL 536 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + + R ++A DI +LVR + L+ L SV ++R + Sbjct: 537 ---LTDAQQGNAMLSGRAVKAGDIAILVRTGAEARLVRDQLDALSIP---SVYMSNRESV 590 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 ++L + IL+ ED+ L + +F ++ ++ E ++ Sbjct: 591 FATREARELYHIFAAILNPEDEGLLRAALATSIFEKPAIELDQLSNDEKVWEQTVAEFKQ 650 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532 + ++Q + + L++ ++L + G ++ L E Sbjct: 651 Y--QNTLQWQGFLPALRLLLNQQN------IAAIMLSGQGGDRRLTDVL------HLGEL 696 Query: 533 LNFTLRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 L YS + ++E + + V+++T+H +KGLE +VF Sbjct: 697 LQEASLELDGEYSLFRWFGEKIENPNSDAQEQLVRLESEADLVQVVTIHKSKGLEYNLVF 756 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L + + + ++ D + + + E R Sbjct: 757 LPFICATRQASTPLYHQDGHTYVHLDL----------DDEEALESAKEQADQERLAEDLR 806 Query: 650 LLYVGMTRASD--QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK- 706 LLYV +TR L + ++ K + ++ + K + + Sbjct: 807 LLYVALTRGVYATWLGLGAVKMGNSHNKMHLNAMGYLLQQGEECKDTEFKACVEKLAEQQ 866 Query: 707 ---DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 D + + + M + + S+ D Sbjct: 867 TCVDVVSPPLAAVDAYQPIVAPPVVYQARTMTNPISKNWWVTSYSALSRHSHGNRHSSYD 926 Query: 764 TKGKTNLESLL----------------SDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFI 805 + S + G ++H + + I + E I Sbjct: 927 ASLELPGFDAEVDTEKEDEHEASWDIFSFPRGAAAGTLLHTVFEHIDFANVDEDMLTEQI 986 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSV--------- 851 + + LL + ++L+ P+ + E+ Sbjct: 987 LQLLEREG--YDLAWLPVLLKLVNQVLDCPLQDGFSLRQLTPTQKKVEMEFFMPISSLNC 1044 Query: 852 ----------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE- 894 +G+++ + ++ G ID + + + ++ +YK++H + + Sbjct: 1045 DDLNTLIKQHDDLSQQAGELDFQQVSGMLKGFIDLVFVYEGRYYVLDYKSNHLGDSQADY 1104 Query: 895 --------HIPYTHIAQLSIYEKILKDSYPNK 918 + + + Q +Y L ++ Sbjct: 1105 TCDAINQVMVEHRYELQYQLYTLALHRFLRSR 1136 >gi|324114889|gb|EGC08855.1| exodeoxyribonuclease V [Escherichia fergusonii B253] Length = 1183 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 126/878 (14%), Positives = 266/878 (30%), Gaps = 129/878 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFDAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDAALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + L +GD K Sbjct: 365 ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HQQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ G V + + P + W + S Sbjct: 467 AFMFREIPFVPVKSAGKNRGLHFAV----------NGEKQPAMKMWLMDGEYCSVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 TMAQVCAMQIRDWLQAGQRGDALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + T Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMTPEREDTLRSALATSMMGLNALDIENLNT 633 Query: 459 QRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 ET ++ + + + ++ V+ + L S + +L G ++ Sbjct: 634 ----NETAWDAVVEEFDGYRQLWRKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQQAGTQLESEHALVRWLSQHILEPDSNAASQQMRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------QSFEAMLDLSEAK 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + ++ + E RLLYV +TR+ L + +KK + Sbjct: 785 ESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSALGRLLQK 844 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPEN------TPLEREETIKQLMDEQKIPKKLFS 745 E L I T + EE + + + Sbjct: 845 GEPQDAAGLRACIESLCDDDITCQTPPRPDNIRWHMVESASEELSARNLQRSPGDNWRVT 904 Query: 746 PIK------------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793 + + K + + + + G +H L + + Sbjct: 905 SYSGLQQRGHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASPGTFLHSLFETL 964 Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVS 850 + W + +I R N ++ D E+ Sbjct: 965 DFSQPVDSAWVREKLELDGFETWWEPVLTEWIDAILRAPLNETGISLSQLTERDKQVEME 1024 Query: 851 VSG--------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYK 884 ++ + ++ G ID + Q ++ +YK Sbjct: 1025 FYLPITKPLIASQLDTLIRQFDSLSAGCPPLDFLQVRGMLKGFIDLVFRHQGRYYLLDYK 1084 Query: 885 THHHVPQEIEHIPY---------THIAQLSIYEKILKD 913 ++ + + Q +Y L Sbjct: 1085 SNWLGEDSSAYTQQAMAAAMQEHRYDLQYQLYTLALHR 1122 >gi|319778234|ref|YP_004129147.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis MCE9] gi|317108258|gb|ADU91004.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis MCE9] Length = 735 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 112/630 (17%), Positives = 204/630 (32%), Gaps = 127/630 (20%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + F +L + + +K P ++ Q ++ Sbjct: 97 LRAHHKEVGLPAAFQILDMADQKSMLKRILKSMKLDDDKLYP-----IRDVQYGINNKKE 151 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + T + YE+ +K V+DF +L++ T +LL+ IR Sbjct: 152 SGLRAEQVIPTYEFDETYVEIYKTYEKQCQKEGVVDFAELLLRTVELLENN---KTIRGH 208 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HILIDE QDT+ +Q++ + L +FAVGD+ QSIYSF GA Sbjct: 209 YNLRFKHILIDEFQDTNFLQYKWLNLLAGPSTS----------IFAVGDDDQSIYSFRGA 258 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + +R K +++ L ++RS IL +++ + N G + Sbjct: 259 NVEHMRNFERKYAKE--------NLVRLEQNYRSYNHILCAANELIANNTNRLGKN---- 306 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + +Q S S +D + A+ I Sbjct: 307 -----------------LW-------SDKGQGEQISIASLYDQNEE-------AQWILEE 335 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 +I + I +L R + I + V Sbjct: 336 TKQLIREG----------FDHRQIAILYRSNAQSRAIEHSF----ARAGVKYVVYGGLRF 381 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IK ++A + I + D +F+ ++ P + I K+ + ++ Sbjct: 382 YERQEIKHVVAYLQLIHNLNSDNAFLRVVNFPARSIGNRTIEKLDEIAKSVGCSLALAAG 441 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLD 530 K I I L +A + + ++ + + + G E ++ L Sbjct: 442 GLNGEAAKKVNGFIYLIKRLQEVAAESTLPELVEAVIEQTGIDEYYNNEQDGEERLENLS 501 Query: 531 EFLNFTLRN---------------EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRI 574 E ++ E ++ L L S + + V++ Sbjct: 502 ELIDAAKVFCKEEGIAFLKSIEVIEGVDAKNMTPLALFLSTASLEAGDNQSKRNLDAVQL 561 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MTVH++KGLE VF+ +F H + Sbjct: 562 MTVHSSKGLEFDAVFIAGLEQGLFPHDNSISEPGG------------------------- 596 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL+YV MTRA +L + Sbjct: 597 ---------LEEERRLMYVAMTRARKRLYL 617 >gi|17986879|ref|NP_539513.1| DNA helicase II [Brucella melitensis bv. 1 str. 16M] gi|17982519|gb|AAL51777.1| DNA helicase ii [Brucella melitensis bv. 1 str. 16M] Length = 827 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 181 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 237 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 238 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 297 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 298 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 349 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 350 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 380 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 381 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 422 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 423 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 482 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 483 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 542 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 543 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 594 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 595 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 625 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 626 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 668 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 669 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 728 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 729 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 762 >gi|296118828|ref|ZP_06837404.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306] gi|295968317|gb|EFG81566.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306] Length = 1087 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 129/915 (14%), Positives = 255/915 (27%), Gaps = 158/915 (17%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L + + + V+ F + + + + I+ Q +++DE QDTS Sbjct: 235 ELVEELQRQQHELGVVSFGEQMTFAARVASAQPGIGAIQ---RQRYRVVMLDEYQDTSHS 291 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q ++RSL T ++ AVGD Q+IY + GA + + R Sbjct: 292 QRVLLRSLFG------GTPHPELSVTAVGDPMQAIYGWRGATTENLNAFIRDFP---LED 342 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +L +S+R+ + +L + + V V Sbjct: 343 DTPAPQDQLTVSWRNPSRVLELANVVADDI------------------FAGAHPRPVDRL 384 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + I I G+ Sbjct: 385 SARPGADEGDVQ---------LGYFETQEQEREFVALHMKKIYEQSQQVEIDDTGRATKK 435 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +LVR + I + + + L I+D++A+ ++ Sbjct: 436 SLS-AAILVRTNRHAAEIGRHLQA----HGVPYEIVGLGGLLWEPEIQDMVAIATMLVRP 490 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI--------------------- 470 +D + + +L PL DI + + E Sbjct: 491 QDSAAALRILAGPLCGLGMTDINALHKRVENMTGAAEERIVYSPGDDPLDHLRAQLQQQV 550 Query: 471 ------------------------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 +++ + G + + + + L + S D F Sbjct: 551 DNATTKRPEQILGLADAVADMGEAERYTDEGRERIEKLASKLRHLRGYSLGKSLSDLFAD 610 Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAH 565 I R + ++R LD+F + + ++ L + + E Sbjct: 611 IETTFNLRTEVLARDSVGGATHLDKFADIVASYQGDTVGGLLDYLDLAREHENGLDPGEV 670 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ- 624 A + V ++TVH +KGLE V ++ S + K + + + D+ + PQ Sbjct: 671 PAVDDRVLVLTVHKSKGLEWEHVCVLHADSTTYGAKANSFITKVEQVPDEDDVIEPEPQY 730 Query: 625 ----------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS----NT 670 L + K EE RL YV MTR L + Sbjct: 731 DKNGEPKPITRTDYGKAAKALEQQYKADNAEESARLFYVAMTRTEKSLTVTGGGTNSFKP 790 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 + K + +M+ + F + + + E TP Sbjct: 791 GHGSKKGPYLYLEMLAEKFPDLVVEWTVPDEEPEDATGQGLESGVFPFLEPTPAAVRGAK 850 Query: 731 KQLMDEQKIPK---------------------KLFSPIKNDINEPYILNPSTI------- 762 +P+ + + ++ P L S + Sbjct: 851 LVEAARADLPEAQSGEEFGLWESDATALIEEHRALTTPVLEVPMPSELTASDVVNLATDP 910 Query: 763 -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + + N RG H L+ +R Sbjct: 911 DEFARRRRRPVPFKPNSYAKRGTAFHSWLE--------ERFGMEALLEEDELPGTGEVPV 962 Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFI 880 ++ + LE+ + S +V I++GR+D + F+ Sbjct: 963 ADVEALKEKFLESEW-------ANRSPYAVETPFRFNSGGQILNGRMDAVFKEPDGSWFV 1015 Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN-KSLVCLLIYVSEPKVFI---IP 936 ++KT QL+IY + + + + + YVS+ F +P Sbjct: 1016 VDWKTGRPPQGRDMEHA---ALQLAIYREGWRRIIADGQPIRAGFHYVSDNFTFEPRNLP 1072 Query: 937 Q-NKLNKAFAEISTK 950 +L + + ++TK Sbjct: 1073 DGEELARLLSTVTTK 1087 >gi|314979801|gb|EFT23895.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA2] gi|315090029|gb|EFT62005.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA1] Length = 810 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMGDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|295098966|emb|CBK88055.1| Superfamily I DNA and RNA helicases [Eubacterium cylindroides T2-87] Length = 564 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 107/573 (18%), Positives = 189/573 (32%), Gaps = 116/573 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + YE+A+ + +DF+DL+I + LL +R K +++I +DE QD Sbjct: 14 LANIYKFYEDARLEMKAMDFDDLLIEAHKLLNHN---VDVRTKWQNRLDYIHVDEFQDVD 70 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q+ +IR +T L VGD Q+IY++ GA +LR + + Sbjct: 71 PVQYGIIRLITG----------KHAFLCVVGDPDQTIYTWRGASVDIILRFNKDFEN--- 117 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + L ++RST IL +KV S ++ G + Sbjct: 118 -----CETVILDQNYRSTKPILEASNKVISYNQDRIKKDL-----------YTQIPGDDK 161 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + S+ + +A IS Sbjct: 162 ILLHASSEEGDEPL------------------------FVAREISKRHKNG--------- 188 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 I KDI +L R + + R + I + + IKD +A + Sbjct: 189 -IDYKDIAILYRSNYSSRSFERVFRTV----GIPYIIYGGIRFYERQEIKDALAYLKLCT 243 Query: 430 SQED--------DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ---KFANCG 477 ++ DL+ + ++ P + I + ++E ++ +N Sbjct: 244 YPDENDPEQFSLDLAILRVINQPRRGIGQKSIDALREEAASRHINLFEEMRDPLDISNAI 303 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537 K + + I +L + S DF +L + E I+ L E + Sbjct: 304 KRKCEGFVSLILDLRSHRKDYSLEDFLDYVLDKTGYLKMLEDENETERIENLKELKSDIA 363 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 ++ + L + L+ + N V +MTVH AKGLE VFLV+ + Sbjct: 364 QSLKEDPD--MTLETYLQDVSLFTDKTSDLALNSVSLMTVHAAKGLEFDTVFLVNFNDGI 421 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + + + EE RL YV MTR Sbjct: 422 FPSARSV--------------------------------QEGGRKSLEEERRLCYVAMTR 449 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 A LII ++ S + + + ++ Sbjct: 450 AKRNLIITWNTGYSYMLDTYKTSSRFLMEIPKE 482 >gi|160947380|ref|ZP_02094547.1| hypothetical protein PEPMIC_01314 [Parvimonas micra ATCC 33270] gi|158446514|gb|EDP23509.1| hypothetical protein PEPMIC_01314 [Parvimonas micra ATCC 33270] Length = 750 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 126/697 (18%), Positives = 239/697 (34%), Gaps = 139/697 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L K + + VS+ + ++ + + + + Sbjct: 27 GAGSGKTKVLTTKIAYAVLEKNVSEYEILAITFTNKAGKEMKERIENIFKRDISSMWIGT 86 Query: 66 FSLLSSFFLTQKFTP-------------QKNIITQEINKKSPDLKEKLKKSQDEFIKIR- 111 F + S L + ++ +EI K++ + L + ++ I I Sbjct: 87 FHSICSKILRFNIEKIGYSNNFTIYDRDDQKLVLKEIFKQNLTWESVLGEFKNAIIGIIS 146 Query: 112 -DRFNTYKMFKSTLASL-----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 + K + + + + + YEE KN LDF+DLI T +L KK Sbjct: 147 DAKGKNVKSSEFSKYFSFGNNTDVVEKIYKKYEEILIKNNALDFDDLIFKTIELFKK--- 203 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++ +I +DE QDT+ Q+E+I+ L + + + AVGD QS Sbjct: 204 CPEVLDYYSEKFKYIYVDEYQDTNDAQYEIIKLLASKY----------KNVCAVGDIDQS 253 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY + GA +L + II L ++RST IL +++ N + Sbjct: 254 IYGWRGANISNILNFENDFPNS--------KIILLEENYRSTQKILDCANELIKNNVNRK 305 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 + LW + + + SY + + Sbjct: 306 EKN---------------------LW-------TKKEGGDEIIYKSYQN-------ENYE 330 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A +A +SN+I DI VL R + I R I+ Sbjct: 331 AIEVAQNVSNLIFEG----------YNLSDIAVLYRANFQSFAIENALR----KNSIAYR 376 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETE 464 D IKD++A + I + +DD +F ++ P + + K+ E Sbjct: 377 MVGGLKFYDRKEIKDILAYLKLIANPKDDNAFRRIINYPKRSIGNVSLQKLEEYCYSENI 436 Query: 465 TVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK---KGRQ 515 +++ E++ + ++F++ I I + +L + + Sbjct: 437 SLFDGLFRNEFLDSVSKKLRTEFENFRDMIFGFITCVEDTEVEILIKELLDSIKFVDYLR 496 Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRI 574 + + + + ++ FL NSY ++ L+ LE + + + V + Sbjct: 497 ENEKKEFEKKAENINLFLEEI----SNSYKGIK-LLEYLETNSLLSDIDKTEDSDDTVTL 551 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 T+H+AKGLE VVF++ +F + K Sbjct: 552 TTIHSAKGLEYKVVFIIGMDEGIFPSERSIK----------------------------- 582 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YV +TRA ++L I + + Sbjct: 583 ----ERDDGLEEERRLFYVAITRAKEKLFISSTKSMT 615 >gi|314969858|gb|EFT13956.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA1] Length = 810 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSPSASGRSQSARGALRDDTPA 742 >gi|297538865|ref|YP_003674634.1| Exodeoxyribonuclease V [Methylotenera sp. 301] gi|297258212|gb|ADI30057.1| Exodeoxyribonuclease V [Methylotenera sp. 301] Length = 1158 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 152/970 (15%), Positives = 325/970 (33%), Gaps = 105/970 (10%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 + L P + I +Y + ++E I Q + + L++F +T Sbjct: 244 VLDTLTPRVQSLLMPIARYAASNLEADAE-IAPLRDWQQPITAEAECLPDWQALANFLVT 302 Query: 76 Q-KFTPQKNIIT----------QEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKS 122 + + T +K++ + + ++ L+ SQ + + N + + Sbjct: 303 KSERTFRKSLNKNIGFPATPEGKTYKEAYSEIVSSLESSQVIASVLDLPALANIAENQEI 362 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A L H + +DF + + L+ + + K+D +I+H+LI Sbjct: 363 IKALTRLLILAERHLWIVFQAAGEVDFVAIAQSAQLALENEQGATDLALKLDYKISHLLI 422 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDTS +Q +I L E + RTLF VGD QSIY F A+ L+ Sbjct: 423 DEFQDTSPVQTRLIEKLIEGW-----QPDDGRTLFCVGDPMQSIYRFRKADVSLFLQASE 477 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSR 301 + ++L + RS ++ ++ F +++ + + + ++R Sbjct: 478 -----FGIGHLPLTRLQLSRNNRSHPAVVDWINNAFKQVFPANDNINQGAISYRKFTATR 532 Query: 302 IGQVGT-VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 G V L ++ D + + I A +A I + + Sbjct: 533 PNVAGEGVTLHPLILEVTDQE-------------ESQKADLKQIEANYVADLIVKLRSEN 579 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 N I VLVR R + R +N + + L + ++D Sbjct: 580 GAHYN----------IAVLVRSRSHLKELVSEIR--RNHPALKFQAVEIEHLNERQTVQD 627 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----- 475 ++L + + D ++ +L++P + D+ + + T+++ +Q A Sbjct: 628 ALSLVCALHHRADRTHWLNVLRAPWCGLTLADLHAL-AADNHRATIWQLMQDKARLSRLS 686 Query: 476 -CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 G + HV + + + G + + N + V + + Sbjct: 687 EDGQLRLAHVNSVLTTAFNGQGRMPLRRWIESTWLQLGGGKCLVDAGDNRDVQVFFDLVE 746 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 T R+ +SL+ + +L + V+ +T+H +KGLE V L Sbjct: 747 KTGRSGHLDIASLELGMQKLYA------KPDIEADGSVQFLTIHKSKGLEFDAVILPALN 800 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS------KSRNNIVSDLIKHLKKSTQEEYN 648 Q + + + +++ + + +S + ++ L K + E Sbjct: 801 RQPRNGDNELVLWQEVVVDNHLHLIVAPLKSKAVAKTNTGADVYDFLKNLEKTRAENELV 860 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RLLYV TRA QL + +N++ + T ++ + E N + Sbjct: 861 RLLYVAATRAHRQLHLIASM-QANKEGEIKPTANSLLQGLWPAVEADFAQATPVKQNVNA 919 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 + P+ L E + + P+ L + ++ Sbjct: 920 QAGLDIKQFKPQLQRLPSEHFVHISNSTLIGDDIVGRPLARHEGLKADLQMNE-----QS 974 Query: 769 NLESLLSDNQTFNR------GLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAK 814 ++ S + G + H +++ + + + + Sbjct: 975 DVLGDFSSERAREIDFQKHCGTLAHLYMELFAKTDLQSWTYQRLEQCQPAMQKWLAQQGH 1034 Query: 815 --LWPAKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPKKDIIISGRIDQ 870 + +L ++ L + + S SE+S+ K+ + ID+ Sbjct: 1035 VKQLADQGAMQVLAALQTTLASAAGQWVLQNHTDSVSELSLLQTQEDGVKNHV----IDR 1090 Query: 871 ISISQQNIFIFEYK-T----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925 I +I +YK T ++ + H QL Y + + N + ++ Sbjct: 1091 TFIENDVRWIVDYKLTTLDEAKSTTDDLSLMAEQHRPQLERYAGLFS--HENLPIKKAVL 1148 Query: 926 YVSEPKVFII 935 ++S K+ + Sbjct: 1149 FLSAGKLVEL 1158 >gi|313817909|gb|EFS55623.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA2] Length = 810 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 191/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFL 533 +++ + + + + I + + IL + + + + L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETMLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|300742291|ref|ZP_07072312.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567] gi|300381476|gb|EFJ78038.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567] Length = 844 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 126/750 (16%), Positives = 217/750 (28%), Gaps = 154/750 (20%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + P + +S + + + A L+ + Sbjct: 61 AAAEMRERIQALIGPRAQHMWISTFHSFCVRVLRREAK-----ALGLKSTFTIYDSADS- 114 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L + + + K + + + LK +L Y + Sbjct: 115 QRLLTLIIKELNLDTKKFAPKAVGHRISALKNELVS-----------AEEYSAAAANNPW 163 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + + LDF+DLI T LLKK I ++ HIL+DE Q Sbjct: 164 EKTIAQIYTVYTQRLRAANSLDFDDLIGKTVFLLKKFPE---IANYYRRKFRHILVDEYQ 220 Query: 187 DTSLIQWEVIRSLTEDFFVG-------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 DT+ Q+ ++R L G P L VGD QSIY+F GA+ + + Sbjct: 221 DTNHAQYALVRELVGAHPQGNTREQGPYPDAPPPGELTVVGDSDQSIYAFRGADIRNITD 280 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + II L ++RST +IL+ + V N + Sbjct: 281 FESDYSN--------AHIILLEQNYRSTQNILSAANAVIERNPNRRPKK----------- 321 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 LW + S AR IA I + Sbjct: 322 ----------LWTASGEGTKIVGYVAE--------------SEHAEARYIAQEIDRLADE 357 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 I+ D+ + R + L + + IK Sbjct: 358 ---------HGIKPSDVAIFYRTNAQSR----ALEELLMRAGLPYRVVGGTRFYERKEIK 404 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQKFANCG- 477 D +A R + + +DD+S +L P + + + + + A Sbjct: 405 DALAYLRALSNPDDDVSVRRILNEPKRGIGAKSETVVADHASAQRISFFAAARAAAAEPG 464 Query: 478 ---------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525 + K+ +K + +L IA+ S +L + Sbjct: 465 SVPGLGAAAVKKYAQFVKLMDDLAQIARTESAATTLEAVLEQSGYLAALRESKDIQDESR 524 Query: 526 IDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH--------------- 569 ++ L E L+ + E + + L++ + + Sbjct: 525 VENLSELLDAMVEFEAENPGADLEQFLEHVSLVADADSIPSRGASADGQTPSAAQIAAEA 584 Query: 570 ------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + +MT+HTAKGLE PVVFL +F H+ Sbjct: 585 AEAKAQGMITLMTLHTAKGLEFPVVFLTGLEHGLFPHQRALT------------------ 626 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 + E RL YVG+TRA +L I + + KS Sbjct: 627 ----------------DEGEMSEERRLAYVGLTRAMQRLYITRSETRTMWGKSQFNPPSP 670 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 + + +++ AY Sbjct: 671 FLEEIPEELIEWRRLGGFAGFGASGMGAYA 700 >gi|325266832|ref|ZP_08133503.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella denitrificans ATCC 33394] gi|324981573|gb|EGC17214.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella denitrificans ATCC 33394] Length = 782 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 222/694 (31%), Gaps = 136/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L N + + + S Sbjct: 80 GAGSGKTRVLTTRIAWLLQNGMAGVNNILAVTFTNKAAKEMQTRLGAMLPVSLRAMWLGT 139 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F L FL + ++ + + + +K LK+ Q Sbjct: 140 FHGLCHRFLCLHYRDAQLPQSFQILDASDQLAVVKRLLKQLGIAEETVAPRVLQGFINAQ 199 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 ++ + ++ A Y+E ++ V+DF +L++ + ++L++ A +R Sbjct: 200 KESGLRAEQLEAPDHHTKQLIECYAQYDELCRREGVVDFAELMLRSYEVLQRN---AALR 256 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 Q HIL+DE QDT+ +Q+E ++ + D +FAVGD+ QSIY F Sbjct: 257 THYQQRFRHILVDEFQDTNTLQYEWLKLMAGDGAA----------VFAVGDDDQSIYRFR 306 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + R R A I+L ++RS IL + V + + G + Sbjct: 307 GANVGNMTRLMREFGIDAP--------IKLEQNYRSVGTILQAANAVIAHNTDRLGKNLH 358 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 +++ + ++++ D A+ + Sbjct: 359 ---------------------------TEAEAGEKIRFFSAFNDLEE--------AKWMV 383 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I ++ G + I +L R + ++ I Sbjct: 384 DEIKSLHGEGHAL----------QQIALLYRGNAQSRVLEQQL----FQSGIPYKIYGGL 429 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEY 469 + +K +A R ++ +DD + + ++ P + I + ++++ Sbjct: 430 RFYERQEVKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENIQAAAQGQGTSLWKA 489 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVI 526 A K ++ + L + + IL Q + + E Sbjct: 490 ACTLA-AKQQKVAAFVRLVDGLTEQVGVIALPEILQNILDDSGLYQHYRQQKQPAEQERT 548 Query: 527 DVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHSANHNEVRI 574 + LDE +N E++++ L E +++ L + + V++ Sbjct: 549 ENLDELVNAAHFFKPEESAFEILPENAEALPEFPILAFLSNAALESGEAQAEQGQDAVQL 608 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE VFL F + K Sbjct: 609 MTIHAAKGLEFDTVFLSGLEEGRFPSEFSLK----------------------------- 639 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ E RL+YV +TRA +L + Sbjct: 640 -----EQGGIAEERRLMYVAITRARRRLYLSMAQ 668 >gi|240129046|ref|ZP_04741707.1| UvrD [Neisseria gonorrhoeae SK-93-1035] gi|268687424|ref|ZP_06154286.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035] gi|268627708|gb|EEZ60108.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035] Length = 735 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P I + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|225375922|ref|ZP_03753143.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM 16841] gi|225212243|gb|EEG94597.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM 16841] Length = 1182 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 136/916 (14%), Positives = 293/916 (31%), Gaps = 130/916 (14%) Query: 40 ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ----KFTPQKNIITQEINKKSPD 95 E + L+K ++L + + + S + L + P K + + + +++ D Sbjct: 248 EKAVRSDLEKYESLSKLTSFCELSVALSDIKYDRLASSRGFEGDPDKLELVKSLREQAKD 307 Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155 + +KL K + + L K + AK++ ++DF D+ Sbjct: 308 VVKKLCKQYFFCSPEMMIEQLERTEPMLEEVVRLTKQFADEFAAAKRRKNLVDFHDVEHF 367 Query: 156 TNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 +L + + + I+IDE QD++ +Q ++RS++ + Sbjct: 368 ALQILVDEETEKAKKTAEEFRDTFEEIMIDEYQDSNEVQETLLRSISRE-------ERGE 420 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 +F VGD KQSIY F A P+ +++ I+L +FRS ++LT Sbjct: 421 NNIFMVGDVKQSIYRFRLARPELFMKKYDSYS----LEESTTQRIDLHKNFRSREEVLTC 476 Query: 274 VDKVFSIPENA--QGLSEDSTTTIRHRSSRIG-----QVGTVQLWEQVVSQHDSQCNPQQ 326 + +F + D+ + +S G + E+ Q + P+ Sbjct: 477 TNDIFYKIMARSLGNVEYDAEAALYPGASYPAIEMKKTAGKEETAEEQTKQSIADFTPEI 536 Query: 327 ESWTSYFDSLPQE---SSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVR 381 S + L ++ A+ +A I +++ T + G+ R + DI++L+R Sbjct: 537 LLADSNDELLEDTEFSDKKTLEAKIVAEEIRHLMKTQPVTDKATGELRAARYSDIVILLR 596 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + N I + ++ ++++ R + + D+ +L Sbjct: 597 SLSGWA---DSLVEVLNGNGIPAHTVSSTGYFSTVEVQTVLSMLRLLDNPRQDIPMAAVL 653 Query: 442 KSPLFNFSEDDIFKICTQRH-------------------------ETETVYEYIQKFANC 476 +SP+ +++++ + + ++E E QK Sbjct: 654 RSPMAGLTDEELAVLRLEDGSVPFHEAVLELAEGLYEEDGQKEISDSEADSEADQKQGRN 713 Query: 477 GISKFQHVIKY------------IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GN 523 K ++ I+ +L + H+ +IL + GN Sbjct: 714 ADEKTENHIEITAHRKLLKFYKKYKQLRQLVPDTPIHELIEIILRETGYGHYVAAMPAGN 773 Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVH 578 L+ L E+ SY L + +++ N + VRIM++H Sbjct: 774 RRTANLNMLLEKAAAYEKTSYKGLFHFVRYIDELQKYDVDFGEADMVGENEDVVRIMSIH 833 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V + G KM + P L + KS + K Sbjct: 834 KSKGLEFPIVIVSGMGKNFNKQDTRSKMVLHPELGIGLDYMDGKKRIKSPTIAKKAIAKQ 893 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----------------------KS 676 + E R+LYV +TRA ++LI+ + EK + Sbjct: 894 IDLENLGEELRVLYVALTRAKEKLILTGTLKDAPEKLEFFRQQANLSKAADRPLSYLTRE 953 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 + D + + + +++ + + + T E Sbjct: 954 GASGYLDWILPAVLSYGDKYPVRIVEAAELVLDEVENQLEQNEDLTERIEEIEAADTQLV 1013 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN------------------- 777 ++ ++ + S + K + E ++ Sbjct: 1014 GQLKQRFSQRYPYQTDILRKNKYSVSELKHRAMREKFEAEQEETIPAFLEEPVTPTIPLF 1073 Query: 778 -------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 + RG +H++++ E + + K K+ Sbjct: 1074 IQREESVEQETANRGALRGTAVHRVMECYDFASEKSVHEQMEAM-EKEEKITADMRALVR 1132 Query: 825 LLSITRLLENPMMTTA 840 ++ + + Sbjct: 1133 EQTVADFVSSETGKRM 1148 >gi|156972692|ref|YP_001443599.1| DNA-dependent helicase II [Vibrio harveyi ATCC BAA-1116] gi|156524286|gb|ABU69372.1| hypothetical protein VIBHAR_00351 [Vibrio harveyi ATCC BAA-1116] Length = 724 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 179/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 311 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R I ++ Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLIANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R T++E A Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ + L H ++ + G + I+ L+E + T + E+ Sbjct: 463 IELVTALEDDTIEMPLHHQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 523 PEEAEDMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHS 668 +L I Sbjct: 609 QKLYITYAE 617 >gi|325205321|gb|ADZ00774.1| DNA helicase II [Neisseria meningitidis M04-240196] Length = 735 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 99/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASQEQGVSLWQAACNAGAKAAKVAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L + Sbjct: 467 QVGQMPLPEIIAGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPD 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|257092577|ref|YP_003166218.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045101|gb|ACV34289.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 724 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 111/628 (17%), Positives = 213/628 (33%), Gaps = 112/628 (17%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + E F +L + + + K ++ + +N + + ++ Sbjct: 96 LRAHHREAGLPETFQILDAA---DQLSAIKRLL-KNLNVDDEKFPPR--ELMHFINAHKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + ++ + L YE ++ V+DF +L++ + +LL++ + + Sbjct: 150 QGIRAAQAEAYDHYTSRRVELYTEYEGQCQREGVVDFAELLLRSYELLQRNE---PLCRH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+ +Q+ ++ L V + +FAVGD+ QSIY+F GA Sbjct: 207 YQERFRHILVDEFQDTNRLQYAWLKLLAGRGSVR--PETPGACVFAVGDDDQSIYAFRGA 264 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 E + +R + S+I L ++RS +IL + + G + + Sbjct: 265 EIGNMRDLQREFE--------LPSVIRLEQNYRSHGNILDAANALIKQNVGRLGKNLWTE 316 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G+ V + S AR I Sbjct: 317 AG-------AGEPIRVF----------------------------EGISDFDEARFIVDE 341 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 IS ++ I I +L R + ++ + + Sbjct: 342 ISELLREG----------IGRDQIALLYRSNAQSRVLEHQL----FTAGVPYRVHGGLRF 387 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ 471 D IK +A R I + +DD +F ++ P + + ++Y Sbjct: 388 FDRQEIKHALAYLRLIANPDDDTAFARVVNFPTRGIGTRSLEALQEAAQRNNASLYNAAA 447 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530 A + + I +L + S + ++ RQ +++ G + ++ LD Sbjct: 448 SLAGKAGTAVARFVALIEDLRADTRARSLPEVVDHLIDKTGLRQHYLAEKEGQDRLENLD 507 Query: 531 EFLNFTLRN--EQNSYSSLQE-----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKG 582 E +N E + L S L + V++MTVH AKG Sbjct: 508 ELINAATTFLYEDSDQDGEPAANGGPLASFLAHASLEAGEHQAGEGETAVQLMTVHAAKG 567 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE VVF+ +F H++ +++ Sbjct: 568 LEFDVVFITGLEQGLFPHEN----------------------------------AAQERA 593 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL+YV +TRA +L + Sbjct: 594 GLEEERRLMYVAVTRARQRLYLTHAQTR 621 >gi|254392029|ref|ZP_05007220.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC 27064] gi|294814551|ref|ZP_06773194.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|326442941|ref|ZP_08217675.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|197705707|gb|EDY51519.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC 27064] gi|294327150|gb|EFG08793.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 825 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 118/737 (16%), Positives = 227/737 (30%), Gaps = 137/737 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 130 AAGEMKERVEQLVGPRAQAMWVLTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 184 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+K + + K +LK +L + + F+ T Sbjct: 185 RLMALVCRDLDLDPKK-FPPKSFSAKISNLKNEL------IDEESFADSAADGFEKT--- 234 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+D+I+ T +L+ + + H+L+DE Q Sbjct: 235 ---LAQAYRMYQARLREANALDFDDIIMTTVHMLQ---AFPDVAEHYRRRFRHVLVDEYQ 288 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L + P L VGD QSIY+F GA + +L+ + + Sbjct: 289 DTNHAQYTLVRELVGPGYE----DLPPAELCVVGDADQSIYAFRGATIRNILQFEEDYPE 344 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + + L ++RS+ IL+ + V E+ + + Sbjct: 345 --------ATTVMLEQNYRSSQTILSAANAVIERNESRRPKN------------------ 378 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + Q + A+ +A I + Sbjct: 379 ---LW-------TNAGDGAQIIGYVADTEHDE-------AQFVADEIDRLTDASE----- 416 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++A D+ V R + + + + + ++D++A R Sbjct: 417 ----VKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERREVRDVLAYLR 468 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY--IQKFANCGISKFQH 483 + + ED + +L P E I E T + A ++ + Sbjct: 469 VLANPEDSVPLRRILNVPKRGIGERAEAMIDALSLREKITFPQALIRVDEAYGMAARSAN 528 Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 +K + L+ + P +L + + + I+ L E Sbjct: 529 AVKRFNVLMGELRTIVDSGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 588 Query: 536 TLRNEQ--------NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 L EQ +L E + + L I + +MT+HTAKGLE Sbjct: 589 ALEFEQARAEGEGEGGAGTLAEFLEQVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEF 648 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PVVFL VF H +K E Sbjct: 649 PVVFLSGMEDGVFPHMRALS----------------------------------QKKELE 674 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YVG+TRA ++L + + + S + + + ++ + + Sbjct: 675 EERRLAYVGITRARERLYLTRSTMRSAWGQPAYNPPSRFLEEIPVRHLEWRRTGPSAAPA 734 Query: 706 KDEWIAYEWSTHHPENT 722 P + Sbjct: 735 GPVAGFGSRLPSAPSSR 751 >gi|256821408|ref|YP_003145371.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] gi|256794947|gb|ACV25603.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] Length = 726 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 105/582 (18%), Positives = 187/582 (32%), Gaps = 120/582 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YEEA K+ ++DF +L++ +L + HIL+DE QDT+ IQ Sbjct: 173 VYYAYEEACKRGGLVDFNELLLRAYELWANNPH---LLKHYQDRFQHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + + VGD+ QSIY + GA + + + ++ Sbjct: 230 YAWIRLLC----------NDNNRITIVGDDDQSIYGWRGARIENIQQFEKDFP------- 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + L ++RST+ IL + V + G S LW Sbjct: 273 -DCKVSRLEQNYRSTSTILKAANAVIANNHERMGKS---------------------LW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + S F+ + AR IA I + I Sbjct: 310 ------TDGNQGEPIILYSAFNEQEE-------ARFIAARIEDWIQQGN----------S 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 DI +L R + ++ I + IKD +A R + +++ Sbjct: 347 YDDIAILYRSNAQSRILEDAM----LQKGIPYRIYGGLRFFERAEIKDTLAYMRLMANRD 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD SF ++ P E + I R E ++++ K + + Sbjct: 403 DDTSFERVVNQPARGLGEKSVDLIRAQAREEQTSLWQAANKMVVEQLLPPRAKTAMAGFL 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-- 540 I+EL + +++ + + G + + L E +N T + Sbjct: 463 HLINELESSTAELDLWEQTDIVIEHSGLLEMYSKEKGEKGQARKENLQELVNATREFDPD 522 Query: 541 ---QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 + + L + + + V++MT+H+AKGLE P+VF+ + Sbjct: 523 EVVPDELPDMSPLQAFIAHATLEAGETQADEYQESVQLMTLHSAKGLEFPLVFIAGVEEK 582 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H+ EE RL YVG+T Sbjct: 583 LFPHQMSVDEPGG----------------------------------LEEERRLAYVGIT 608 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 RA QL + + + + ++ Sbjct: 609 RAMKQLYLTFAEKRRIFGRETYPQQSRFIREIPDELLTEVRL 650 >gi|88608415|ref|YP_506245.1| UvrD/Rep family helicase [Neorickettsia sennetsu str. Miyayama] gi|88600584|gb|ABD46052.1| helicase, UvrD/Rep family [Neorickettsia sennetsu str. Miyayama] Length = 630 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 114/668 (17%), Positives = 212/668 (31%), Gaps = 135/668 (20%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + NE + + + + + + + + + + + K ++++ Sbjct: 72 AANEMIQRVNEIVGEMKFHWIGTFHAAAAKILRIEAEKLGFKPD-----FTILDVDDQVR 126 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 +L +K + + KK + K ++R F+ Sbjct: 127 MLQKV-----AQEKKIEADKALLKKYLSVISAWKDKAFTPSRVRFNNAANTWFEKQ---- 177 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 A + Y++ K+N +DF DL+++ L K A K ++ +I++DE QD Sbjct: 178 --ALSVYDTYQKKLKENNSMDFGDLLMHNVTLFNKD---AETLEKYKEKFRYIMVDEYQD 232 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+L Q+ +R L + + VGD+ QSIY + GAE +LR + + Sbjct: 233 TNLCQYLWLRLLAQ----------KHSNICCVGDDDQSIYGWRGAEVGNILRFAKDFE-- 280 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I+L ++RST ILT + ++ + Sbjct: 281 ------GAKVIKLEQNYRSTNKILTAAHNIIKNNQSRLTKKLWTAYP------------- 321 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 ++ +Y DS + AR I I + Sbjct: 322 ---------------GGEEIQIFTYMDSEQE-------ARAIIRMIKE-----------R 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 K + + D +LVR T + + I+D++A R Sbjct: 349 KLLCRYSDTAILVRAGFQTRAFEEA----AIHENVPYRVVGGLKFYERKEIRDIIAYLRL 404 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK---FQH 483 +++ D+L+F ++ +P + + KI E +++E ++K K Sbjct: 405 VVNPNDNLAFERIINTPKRGLGQASLNKIYNYSLEEGCSMFEAVRKLEENEKLKSTALLT 464 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 +K + + + S HD I I+ +DE + Sbjct: 465 FVKQVRKWQEESLNHSLHDLLKKITLESGYISAL-KEQDETRIENVDELFRVIQEFDDA- 522 Query: 544 YSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L+ + N + V +MT+H +KGLE VFL F H Sbjct: 523 -------TDFLQHVSLLTESDAQINNSDAVNMMTLHASKGLEFEQVFLPGWEDGTFPH-- 573 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + EE RL YVG+TRA L Sbjct: 574 --------------------------------VRSLCSTEQIEEERRLAYVGITRAKRFL 601 Query: 663 IICKHSNT 670 I Sbjct: 602 TITSAHRR 609 >gi|330718929|ref|ZP_08313529.1| ATP-dependent DNA helicase PcrA [Leuconostoc fallax KCTC 3537] Length = 745 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 104/693 (15%), Positives = 204/693 (29%), Gaps = 136/693 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64 G ++ L ++ + + + ++ L + Sbjct: 30 GAGSGKTRVLTHRIAHLIEDLNIFPWRILAITFTNKAAKEMKERIARLVDEDVARDIWVS 89 Query: 65 RFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 F L+ L + + T + L +++ Sbjct: 90 TFHALAVRILRRDGEKIGLSRNFTIVDTSAQRTLMKRVINDLNLDTNQYDPRAILGAISN 149 Query: 119 MFKSTLASLTLAKYLNAHYEE-----------AKKKNCVLDFEDLIINTNDLLKKRDVSA 167 L+ AK Y+E K+ +DF+DLI+ T +L ++ Sbjct: 150 AKNDMLSPQDFAKQAGNIYQETVAEAYAAYQAELKRAQSVDFDDLIMLTIELFRQSPD-- 207 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + + ++ +DE QDT+ Q+ ++ L + L VGD QSIY Sbjct: 208 -VLERYQNQFEYLHVDEYQDTNDAQYTIVNMLAA----------RSKNLAVVGDADQSIY 256 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA +L ++ ++ L ++RST +IL + V + + Sbjct: 257 GWRGANMNNILNFEQDYP--------DAHVVLLEQNYRSTQNILDAANDVIANNNERRPK 308 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 QLW ++ ++ + A Sbjct: 309 ---------------------QLW-------TQNGEGEKITYYRAQTERDE-------AN 333 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I + D +L R + + + Sbjct: 334 FVLAKIQKLREEQ---------KHAYSDFAILYRTNAQSRNMEEAL----VKANMPYTMV 380 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 + I D+++ I + D+ +F ++ P I + + E Y Sbjct: 381 GGHKFYERKEILDIISYLNLIANPNDNAAFERVVNEPKRGIGPTSINHLREFANRMEWSY 440 Query: 468 -------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 E + ++K +H L A+F + + +++ R+ + Sbjct: 441 MTAIDSIELAPELTARAVTKLLAFADLMHTLQQQAEFLTVTELAEMVMTRSGYRKMLQDK 500 Query: 521 FGNE---VIDVLDEFLNFTLRNE----QNSYSSLQELISEL-EQYPPTIKRAHSANHNEV 572 + ++ L+EFL+ T + + ++ LI L + V Sbjct: 501 NDPDSQARLENLEEFLSVTKEFDDKYNADDIDAVNPLIDFLGSTALMSDLDDFEEGDGAV 560 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVF+V +F Sbjct: 561 TLMTLHAAKGLEFPVVFMVGLEEGIFP--------------------------------- 587 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA +L + Sbjct: 588 -LARATQDDDQLEEERRLAYVGITRAMKKLFLT 619 >gi|254670947|emb|CBA07597.1| DNA helicase II [Neisseria meningitidis alpha153] Length = 735 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 99/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASQEQGVSLWQAACNAGAKAAKVAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L + Sbjct: 467 QVGQMPLPEIIAGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPD 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|114798822|ref|YP_761616.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444] gi|114738996|gb|ABI77121.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444] Length = 781 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 115/645 (17%), Positives = 202/645 (31%), Gaps = 114/645 (17%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A Y+ + DF DL+I+ + ++ I + +IL+DE QDT+ Sbjct: 198 AIKCYEIYQARLRVLNACDFGDLLIHNITIFQESPD---ILREYHDRFRYILVDEYQDTN 254 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 + Q+ +R L + + L VGD+ QSIY + GAE +LR ++ Sbjct: 255 VAQYLWLRLLAQ----------GSKNLCCVGDDDQSIYGWRGAEVDNILRFEKDFP---- 300 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++ L ++RST IL V + + G + Sbjct: 301 ----GAKVVRLERNYRSTRHILAAASSVIAHNKGRLGKT--------------------- 335 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L+ S + + + +D + R IA I + + Sbjct: 336 LYVGNDSAVNEDTDAPKVKVRGLWDGEAES-------RLIADDIESWVRGGG-------- 380 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + VLVR L I + I+D MA R I Sbjct: 381 --RHDGCAVLVRASWQMRAFEERFILL----GIPYRVIGGPRFFERAEIRDAMAYLRLIR 434 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQ 482 S +DDL+F ++ P + + K+ R + +++ K Sbjct: 435 SPDDDLAFERVVNEPKRGVGDTSLAKLQSYARQDGRSLFTLTPMVLQTDEIKGGAKRGLT 494 Query: 483 HVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 I I+ +A + +IL + LD Sbjct: 495 TFIDQINLWRGKLAGGMPHTELAEMILEESGYTDMLQKDRSPQAQTRLDNLKELVRAM-- 552 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + +L + +E A ++V+I+T+H AKGLE PVVFL +VF + Sbjct: 553 GEFDTLAGFLEHVELVMDAS--AGGNGEDQVQILTLHAAKGLEWPVVFLPGWEEEVFPSR 610 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YVG+TRA ++ Sbjct: 611 RSLDESGL--------------------------------KGLEEERRLAYVGITRARER 638 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 I +N + W ++ F ++ + + + A + Sbjct: 639 CYISFVAN-----RQIYGRWQAVMPSRFIDELPPEHVDAVSETGYSGLPASADAFSGTIE 693 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 ER + Q +++ + P + L + T G Sbjct: 694 DLGERSD--YQSPGWKRLKENAGRPTGAPPRDAAGLTATASGTSG 736 >gi|254674097|emb|CBA09881.1| DNA helicase II [Neisseria meningitidis alpha275] Length = 735 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKIAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|294794377|ref|ZP_06759513.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44] gi|294454707|gb|EFG23080.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44] Length = 1251 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 116/698 (16%), Positives = 219/698 (31%), Gaps = 62/698 (8%) Query: 28 VSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEERFSLLSSF------FLTQK--- 77 + + + ++ TG A + + + F+ + Sbjct: 237 RERLERMEQILLDPTGPHKWQNIYDNQLAALGMLSAAQTWDDMGEACKHMDTFIKDQFRM 296 Query: 78 FTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRDRFNTYK---MFKSTLASLTLA 130 + + + + L K+ LK Q + + + + + L Sbjct: 297 GSKEAQAYDPILVAEFKSLGGQNKDDLKAMQAAIFTVPEATLQEQFKAQYPIIEGLVELT 356 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEV 185 + Y + K++ ++DF DL LL + + + ++ I++DE Sbjct: 357 IAFHQAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSEVAKELQDTFKEIMVDEY 416 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q +I + S F VGD KQ+IYSF A+ + + Sbjct: 417 QDTNGVQETIINLI-----------SRIDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG 465 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR---- 301 I+L +FRS A+IL + +F + T R Sbjct: 466 ----GNDAVERRIDLAKNFRSDANILAATNFLFYQIMTEDAAELNYTEAESLIPGRIVED 521 Query: 302 ---IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 G V+L VS+ + E D + I I + Sbjct: 522 APEDWVGGDVELQLLDVSKDTLGASESDE------DEGDDPENNERELDFIIQKIKEIHA 575 Query: 359 TDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 +G R I+ +D +L R I V N+R + Sbjct: 576 AKKQVQNPDGTFRQIEWRDFAILRRSLAGWGTRAV---EAMRQAGIPAVVNERDGYFEAQ 632 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 I+ L+AL I + E DL +L S L +++ + E Sbjct: 633 EIQLLLALLSVIDNPEQDLPMAAVLHSGLVGLDANELGALRLS-GEGSLWSLMPAYAEEA 691 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535 + I ++ +++ D I ++ G + + Sbjct: 692 QDERLLAFIGHMERWRTLSRRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDR 751 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFL 590 E + + L + +E + + S N VR+MT+H +KGLE PVVFL Sbjct: 752 AKGYEASGFRGLFRFLRFVESLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFL 811 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + ++ I + + + + + + E R+ Sbjct: 812 SGVQKRFNMMDLRSELLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRI 871 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 LYV +TRA D+L + K T +++ ++ Sbjct: 872 LYVALTRARDKLFMTGFIKGFKNSKGVLSTIGELIKNA 909 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 68/224 (30%), Gaps = 14/224 (6%) Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + + + E + ++ E L PI L S + L+S Sbjct: 1021 DATRRTAKISVSELKRRFQERELEAGTIDTLNEPIATVEVSADALANSVFG-RKPQALQS 1079 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-SITRL 831 G ++H+ +Q + + + + +E L S+ + Sbjct: 1080 EDDVLTGAQWGTLMHEAMQWLPLVKYTQASLTKELDALVAKGTFTEEERNLLSDTSLYKF 1139 Query: 832 LENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFE 882 + + + + E+ S +++ + G ID + + Sbjct: 1140 FNSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEEDGEWVLVD 1199 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 YKT E + + Q+ +Y++ L+ + IY Sbjct: 1200 YKTDRVTSG--EELIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1240 >gi|290958050|ref|YP_003489232.1| ATP-dependent DNA helicase II [Streptomyces scabiei 87.22] gi|260647576|emb|CBG70681.1| putative ATP-dependent DNA helicase II [Streptomyces scabiei 87.22] Length = 836 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 116/738 (15%), Positives = 225/738 (30%), Gaps = 143/738 (19%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D ++T Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEEDF------------AAQATDGF 230 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 231 EKTLAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287 Query: 187 DTSLIQWEVIRSLTEDFFV-----GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 DT+ Q+ ++R L P L VGD QSIY+F GA + +L+ + Sbjct: 288 DTNHAQYALVRELVGTSEHPVDVPPDEWDVPPAELCVVGDADQSIYAFRGATIRNILQFE 347 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + I L ++RST IL+ + V E+ + + Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 386 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 LW + Q + + A+ +A I + Sbjct: 387 --------LW-------TNAGAGAQITGYVADTEHDE-------AQFVADEIDRLTDAG- 423 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +A D+ V R + + + + + ++D+ Sbjct: 424 --------DAKAGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDV 471 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480 +A R + + ED + +L P + + + E + + +++ Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMVDALSQREKISFPQALKRVDEAYGMA 531 Query: 481 FQ--HVIKYIHELIHIAQF-----CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 + + +K + L+ P +L + + + I+ L Sbjct: 532 ARSTNAVKRFNTLMDDLCTVVESGAGPATILEAVLERTGYLAELQASTDPQDETRIENLQ 591 Query: 531 EFLNFTLRNEQN-------------SYSSLQELISELEQYPPTIKRAHSANHNE--VRIM 575 E L EQ + + L + + + + + +M Sbjct: 592 ELAAVALEFEQESGAAEAEGEEAAANPAGLPAFLERVALVADSDQIPDEEEDGSGVITLM 651 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+HTAKGLE PVVFL VF H Sbjct: 652 TLHTAKGLEFPVVFLTGMEDGVFPHMRALG------------------------------ 681 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + EE RL YVG+TRA ++L + + S S + + + + Sbjct: 682 ----QTKELEEERRLAYVGITRARERLYLTRSSLRSAWGQPSYNPPSRFLEEIPATHLEW 737 Query: 696 KKIKLTNSINKDEWIAYE 713 K+ + ++ Sbjct: 738 KRTGASTPVSSGPASGVA 755 >gi|289424917|ref|ZP_06426696.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187] gi|289427700|ref|ZP_06429412.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165] gi|295131282|ref|YP_003581945.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137] gi|289154616|gb|EFD03302.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187] gi|289159191|gb|EFD07383.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165] gi|291375534|gb|ADD99388.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137] gi|313763127|gb|EFS34491.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA1] gi|313773164|gb|EFS39130.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL074PA1] gi|313793367|gb|EFS41425.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA1] gi|313800989|gb|EFS42257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA2] gi|313808729|gb|EFS47183.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA2] gi|313810354|gb|EFS48068.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA1] gi|313816467|gb|EFS54181.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA1] gi|313819821|gb|EFS57535.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA1] gi|313823311|gb|EFS61025.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA2] gi|313824786|gb|EFS62500.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA1] gi|313828273|gb|EFS65987.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA2] gi|313830207|gb|EFS67921.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL007PA1] gi|313832960|gb|EFS70674.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL056PA1] gi|313838057|gb|EFS75771.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL086PA1] gi|314917767|gb|EFS81598.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA1] gi|314919507|gb|EFS83338.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA3] gi|314925815|gb|EFS89646.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA3] gi|314930099|gb|EFS93930.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL067PA1] gi|314957100|gb|EFT01205.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA1] gi|314957690|gb|EFT01793.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA1] gi|314960758|gb|EFT04859.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA2] gi|314972985|gb|EFT17081.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA1] gi|314975621|gb|EFT19716.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL045PA1] gi|314984812|gb|EFT28904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA1] gi|314986165|gb|EFT30257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA2] gi|314988777|gb|EFT32868.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA3] gi|315079961|gb|EFT51937.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL078PA1] gi|315083289|gb|EFT55265.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA2] gi|315086938|gb|EFT58914.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA3] gi|315096648|gb|EFT68624.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL038PA1] gi|315097877|gb|EFT69853.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA2] gi|315100641|gb|EFT72617.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA1] gi|315109268|gb|EFT81244.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA2] gi|327325064|gb|EGE66870.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA3] gi|327325309|gb|EGE67114.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA2] gi|327443823|gb|EGE90477.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA1] gi|327449135|gb|EGE95789.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA2] gi|327449263|gb|EGE95917.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA2] gi|327451317|gb|EGE97971.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA3] gi|327451706|gb|EGE98360.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL092PA1] gi|328752262|gb|EGF65878.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA1] gi|328755353|gb|EGF68969.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA2] gi|328756392|gb|EGF70008.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL020PA1] gi|328761099|gb|EGF74648.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL099PA1] Length = 810 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|308388456|gb|ADO30776.1| DNA helicase II [Neisseria meningitidis alpha710] Length = 735 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|295100618|emb|CBK98163.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii L2-6] Length = 887 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 108/635 (17%), Positives = 204/635 (32%), Gaps = 124/635 (19%) Query: 88 EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147 ++ K +K + + ++ K LA + A YE+ K+ Sbjct: 187 SVDDKFFPVKSAINQMSRWKDQLISPAEALKTPARDTK-GALAAKVYAAYEKKLKEAGAF 245 Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 DF+DLI T LL + + +R + ++L+DE QDTS+ Q+ ++ LT Sbjct: 246 DFDDLIYQTVILLSEHED---VREFYQNKYKYLLVDEYQDTSVAQFRLVSLLTG------ 296 Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267 + + VGD+ QSIY F GA + +L +RI + I L ++RST Sbjct: 297 ----PEKNICVVGDDDQSIYRFRGATIENILNFERIY--------KGTRTIRLEQNYRST 344 Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 ++IL + V +G + LW + Q Sbjct: 345 SNILNAANCVIQHNTERKGKT---------------------LWTKNGEGDKVQ------ 377 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 + + A IA I + D +L R + Sbjct: 378 --------VYTAENEQDEASHIADVIGQHLKEGG----------HLADHAILYRMNAQSA 419 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 I I D +KD+ + + + DD+ ++ P Sbjct: 420 PIESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARK 475 Query: 448 FSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPH 501 I I + ++ + I I+ +L + + Sbjct: 476 IGATTIEVIADLAAQQGISMLDVISHADQYAKLSRAIAPLFKFWDIYQKLQESLETKTLD 535 Query: 502 DFFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISE 553 +F + ++ R + + + L + +N + +SL+ + + Sbjct: 536 EFASDVIEITGYRAMLEADAAKGHEDAADRLQNLGQLVNNVKSYCDQHGEEASLEGYLED 595 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + + ++V +MT+H+AKGLE P VFL+ VF + K Sbjct: 596 IALISDIDSYN--ESADQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSK--------- 644 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT--- 670 ++ EE RL YVG+TRA +L I Sbjct: 645 -------------------------YSEADLEEERRLAYVGITRAKKELYISNSVTRMLY 679 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 +++ + + + + R ++ + + Sbjct: 680 GRTQRNEPSRFLREIEPEYIEETRSPVLEQRSRLG 714 >gi|284043266|ref|YP_003393606.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] gi|283947487|gb|ADB50231.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] Length = 1184 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 136/946 (14%), Positives = 291/946 (30%), Gaps = 116/946 (12%) Query: 25 YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84 ++ + +++ ++ + L + + S + + Sbjct: 193 ALAIARVQAEAEVAVARDGRSVFRARLALAECERLLERVAAASAGDPGYAPSPGEVARLA 252 Query: 85 ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144 + + + + E + + ++ + + A L Y EAK++ Sbjct: 253 LPRNGRALAGEGCEGYRTALQAYVDACADAHAVPVHGLLDALLR---GFGRRYAEAKQRA 309 Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 +DFEDL + N LL++ + +R + + H+++DE QDT+ +Q E++ + + Sbjct: 310 SAVDFEDLELRANRLLREHEE---LRARYAERFVHVMVDEFQDTNPLQLELLERIAGE-- 364 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 LF VGDE QSIY F A+ + ++R + + L +F Sbjct: 365 ----------RLFTVGDELQSIYGFRHADVEL-------FRRRRKALAEHGAAASLATNF 407 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RS A+IL ++ F+ + R + + V+L V + Sbjct: 408 RSHAEILETLNVAFAPRFGESFTPLVAGREERADALPVAGP-RVELLVVDVRADWANAGL 466 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 E + AR +A + ++ +A D+++L+R Sbjct: 467 LPEGMAAP-----APLWRVAEARALAARVRELLDGGR----------RAGDVVLLLRATG 511 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 D + L + ++DL+A + + D ++ +L SP Sbjct: 512 DLAVYERALTDLA----VPTYVIGGRGYWAQQQVRDLVAYLGVLANPRDGVALQSLLASP 567 Query: 445 LFNFSEDDIFKICTQ----RHETETVYEYIQ---------KFANCGISKFQHVIKYIHEL 491 L S D + ++ R E E + + A + + + ++ Sbjct: 568 LVGLSSDGLVQVVAAARASRREGEPPDPWWVLTEGRELLARLAPDDAERVEELRAWLPAE 627 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550 A S +L + + G + + + + E L+ Sbjct: 628 RATAPRHSLESLLDRVLDQTGYDVELLRLPSGARRLANVRKLMRLAREFEAEEGRDLRGF 687 Query: 551 ISEL-----------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + EQ + + VR+MT+H AKGLE PVV + D G Sbjct: 688 VDMVMELGGGLESSREQDRESEAPVEGEALDAVRLMTIHRAKGLEFPVVCVADLGRGS-P 746 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + + + + + ++ +E RL YV MTRA Sbjct: 747 AAGSDVVRVGRDGRVGIKLKTLDGSAPRPALAYRPIGEARARAESDEEARLYYVAMTRAR 806 Query: 660 DQLIICKHSNTSNEKKS----------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 +QLI+ T + ++ + + E + Sbjct: 807 EQLILSGAVPTEPWPEPKLGAPAITWIGPAFVPEIARLAAPDGEPSGVVSNEGQAVAYSV 866 Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP-----------YILN 758 + + P E + ++ P + ++ P L+ Sbjct: 867 VRPGAAALAPSLAGSEGDRGRVLSHARERTPAGRRAHVRARATRPIGDGGGTAPPVATLS 926 Query: 759 PSTID-------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL-PE 798 +++ RG+I H LL+ + + + Sbjct: 927 YTSLADHARCGYRFYLERVLRLPPVDDAPRGRGGRHGLAASTRGVIAHALLEQVDFVRAQ 986 Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858 + + A+E + + R L +P+ S + Sbjct: 987 PPDAELVRRAAVRAGADPTAEELDEIRGLVVRFLASPLRERLASARDLR---REQAFSFA 1043 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI-EHIPYTHIAQ 903 ++ + G D I+ I ++K+ + E + + Q Sbjct: 1044 LDELPLVGVFDAIAREGNRTLIVDWKSDRLEGADPGETVARAYGLQ 1089 >gi|327332323|gb|EGE74059.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL097PA1] Length = 810 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|238020268|ref|ZP_04600694.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147] gi|237868662|gb|EEP69666.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147] Length = 746 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 121/770 (15%), Positives = 224/770 (29%), Gaps = 140/770 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L S + + + + + Sbjct: 36 GAGSGKTRVLTTRVAWLLQNQMASVRSILAVTFTNKAAKEMQTRLSAMLPLNLRAMWLGT 95 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L FL ++ + + + + +K LK+ + R + Sbjct: 96 FHGLCHRFLRLHYREAGLPQTFQILDSSDQLSLIKRLLKQLNISEESLAPRVLQGFINAQ 155 Query: 123 TLASLTL---------AKYL---NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 A L + L A YE+ ++ V DF +L++ + ++L +V +R Sbjct: 156 KEAGLRAGSLNAPDPHLQRLILCYAEYEKQCQQEGVADFAELMLRSYEVLNANEV---LR 212 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 NHIL+DE QDT+ +Q+ ++ + + +FAVGD+ QSIY F Sbjct: 213 THYQNRFNHILVDEFQDTNKLQYAWLKLIAGEQSA----------IFAVGDDDQSIYRFR 262 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + R A I+L ++RS +IL + V G + Sbjct: 263 GANVGNMTDLMREFHIAAP--------IKLERNYRSVGNILAAANAVIQNNSERLGKNL- 313 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + +++ + + +Y D A+ I Sbjct: 314 --------------------------RTEAESGDKIRYFCAYNDYEE--------AQFIT 339 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 ++ T I +L R + +I I Sbjct: 340 EECRHLQRHGTPLDQ----------IAILYRSNAQSRIIEQQL----FQAAIPYRIYGGL 385 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469 + IK +A R ++ DD + + ++ P + I + ++++ Sbjct: 386 RFYERQEIKHALAYLRLAVNPNDDNALLRVINFPPRGIGTRSVENIQAAAAEQGISLWQA 445 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVI 526 SK ++ I + IL + ++ E Sbjct: 446 ACGMG-AKASKIAAFVQLIDSFQQQIPHFRLPEILQTILQDSGLYAHYQAQKQASERERT 504 Query: 527 DVLDEFLNFTLRN-----------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRI 574 + LDE +N E N+ S +++ L + A V++ Sbjct: 505 ENLDELINAAEYFRPEDSPFETQPENNTDSPEFPILAFLSNASLESGETQAGAGQEAVQL 564 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MTVH AKGLE VFL F + Sbjct: 565 MTVHAAKGLEFDNVFLSGMEEGRFPSEMSL------------------------------ 594 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + +E RL+YV +TRA +L I +++ T +V Sbjct: 595 ----AEHGGLQEERRLMYVAITRARKRLYISMAQ----QRQLYGITQTSIVSRFIDEIPG 646 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 L+ S H + + E + Sbjct: 647 ELLHHLSPPKPTGSLKTASASASHWAHPQKQPENECNATSHTPRDYHGYT 696 >gi|238792776|ref|ZP_04636407.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia intermedia ATCC 29909] gi|238727884|gb|EEQ19407.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia intermedia ATCC 29909] Length = 1202 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 131/976 (13%), Positives = 297/976 (30%), Gaps = 146/976 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 + I + + + ++ +L +G ++ L + I Sbjct: 221 QQIVVQIDAVKAQWRAVAHELEALISASGVDKRSYSSRYLPNWLEKVGIWAVQETGDYQL 280 Query: 74 LTQKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 + +++I+ T++ + + ++ + +RD Sbjct: 281 PKELEKFRQSILFEKTKKGAAPQHSVFSAIDSIFEQPLTLRDLI-----------LARAI 329 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + ++ K++ L F+DL+ + L++ + I +IDE QDT Sbjct: 330 SEIRTSVQQEKRQRAELGFDDLLSKLDAALQQPG-GELLAQSIRTRYPVAMIDEFQDTDP 388 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ + +L + S L +GD KQ+IY+F GA+ +R + T Sbjct: 389 QQYRIFHTLYG--------NQSECGLLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT- 439 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 L ++RS+ ++ V+++FS E + + + Sbjct: 440 ---------LETNWRSSFPMVQSVNRLFSSVEVPFLFEQIPFIKVA----------AAEK 480 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSN 365 ++ + + P W + + ++AR+ A I + + + + Sbjct: 481 NSRLSFEIKGKKQPAISFWLQPGEGVGVSEYQQLMARQCASQIRDWLVDGQKGLAQLVTT 540 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 R +QA DI +LVR R + L+ L SV ++R + D KDL+ L Sbjct: 541 AGSRPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAEAKDLLWLL 597 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485 + +L+ E + + + + + + + +T+ + + + V+ Sbjct: 598 QAVLAPEQERALRSAMATGMLGLDAQMLDALNHDERAWDTLVDEFDGYRQHWQR--RGVL 655 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQN 542 + E++ +L G ++ L E L L +E Sbjct: 656 PMLREIMAQRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHA 703 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L + I++ + ++ + V+++T+H +KGLE P+V+L G+ Sbjct: 704 LIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQQQDV 763 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + N + ++ E RLLYV +TRA Sbjct: 764 LYHDRHSFEAL-------------LDLNADEESQSLAEEERLAEDLRLLYVALTRAVYHC 810 Query: 663 ------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDER-----VKKIKLTNSINKDEWIA 711 +I E + +V D + + ++ ++ + +A Sbjct: 811 SIGIAPLIKGGRKKQGESDMHLSALGYLVQHGQAGDAQYLADKLAELTASSGGDIAVLLA 870 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------------NDINEPYIL 757 + P E + + Q + L Sbjct: 871 ERPDATAWQPRPEILPELAARQFNRQMHDFWRVTSYSGLQQHGSKSQALNIPLQELLPRL 930 Query: 758 NPSTIDTKG--KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 + + + + + + G +H LL+ + + + Sbjct: 931 DSDAVGEQAPIAAADLTPHTFPRGAAPGTFLHDLLEPLDFSQPIEPDWLAEQLQQQGFGE 990 Query: 816 WPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKINCPKK------------ 860 + L I + L + + +E+ I+ + Sbjct: 991 QWSPMLYQWLSDIMHVPLNDTGVTLAGLTPDSKQAELQFYLPIDTLLRANQLDALIKHYD 1050 Query: 861 --------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-------- 898 ++ G ID + Q ++ +YK++ + Sbjct: 1051 PLSRQCPVLDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTAQLMAQAMAE 1110 Query: 899 -THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1111 HRYDLQYQLYTLALHR 1126 >gi|27364389|ref|NP_759917.1| DNA-dependent helicase II [Vibrio vulnificus CMCP6] gi|37681375|ref|NP_935984.1| DNA-dependent helicase II [Vibrio vulnificus YJ016] gi|27360508|gb|AAO09444.1| DNA helicase II [Vibrio vulnificus CMCP6] gi|37200127|dbj|BAC95955.1| DNA helicase II [Vibrio vulnificus YJ016] Length = 724 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL++ +IR HIL+DE QDT+ I Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLREN---KFIREHYQARFKHILVDEFQDTNNI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I + Sbjct: 311 -------TDGVEGEPISIYSAYNELDE-------ARFAVNKIKEWQDKGGVL-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R I ++ Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLIANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P + + + R T++E Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETVRFAARDRGCTLWEASIALIEEKVLTGRAAGALSRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ I L + H ++ + + G + I+ L+E + T + E+ Sbjct: 463 IELITALEDDSFEMPLHIQTDHVIKSSGLYTMYEQEKGEKSKARIENLEELVTATRQFEK 522 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 523 PEEAEEMSLLTAFLTHAALEAGEGQADDFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHS 668 +L I Sbjct: 609 QKLYITYAE 617 >gi|313637420|gb|EFS02884.1| ATP-dependent DNA helicase PcrA [Listeria seeligeri FSL S4-171] Length = 544 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 99/562 (17%), Positives = 181/562 (32%), Gaps = 115/562 (20%) Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F+DLI+ T L ++ + ++ +I +DE QDT+ Q+ +++ L F Sbjct: 3 FDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF----- 54 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 + L VGD QSIY + GA+ ++ ++ I L ++RST Sbjct: 55 -----KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEENYRSTK 101 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 IL ++V N + + LW S ++ Sbjct: 102 RILEAANRVIENNGNRKPKN---------------------LW-------TSNAEGKKIF 133 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + + A + I + + D +L R + + Sbjct: 134 YHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTNAQSRV 177 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 + ++ D IKD++A R I + EDD+S ++ P Sbjct: 178 MEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINVPKRGV 233 Query: 449 SEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ +++E + + + + F S + Sbjct: 234 GPGTLEKLNNVATAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDFLSVTE 293 Query: 503 FFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELEQYP 558 IL R + E + +DEFL+ T E+ +L +++L Sbjct: 294 LVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENEDKTLIAFLTDLALVA 353 Query: 559 PTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 K V +MT+H+AKGLE PVVFLV +F H Sbjct: 354 DVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS--------------- 398 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 ++ EE RL YVG+TRA ++L + + + Sbjct: 399 -------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRP 439 Query: 677 NQRTWYDMVYDSFHNDERVKKI 698 + + + + + Sbjct: 440 SSNQESRFIGEIPRDLLELANE 461 >gi|88608144|ref|YP_506352.1| ATP-dependent DNA helicase UvrD [Neorickettsia sennetsu str. Miyayama] gi|88600313|gb|ABD45781.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia sennetsu str. Miyayama] Length = 907 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 174/848 (20%), Positives = 333/848 (39%), Gaps = 92/848 (10%) Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE-E 139 +K K L L ++ KI ++ + + S+ + E Sbjct: 151 KKTAEKTTERKLHETLASLLSNFHLDYRKIIEKLKNDPLEQLATESIDILSAFTQFLEIN 210 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 + +I ++ W Y+I +I+HIL+DE QD S+ QW +I +L Sbjct: 211 QNISKHYISHNGIIETAIEM------EIWNVYEIAAKIDHILLDEAQDNSIKQWYIISNL 264 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 DF + + + +++F VGD KQSIY F GA P+ L I ++R + K ++ Sbjct: 265 CRDFLIDETHN---KSIFVVGDYKQSIYGFQGASPEMYLAFYDILKQR--DPQNKLVQVK 319 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 S+RS+ IL VD VF + L + S+ IRH +SR G +++ + Sbjct: 320 TAKSYRSSTAILQFVDSVFENIQ----LCKTSSEKIRHTTSRTEAPGYIEVIPLL----- 370 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 + + LA I TI + + K R ++ DIL+L Sbjct: 371 ---------------QYGEVDAELQLAISIRETIQSWLKIGRTL-KAKNRPVKGSDILIL 414 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 V R + + I V +F + ++ + L+ LG+F++ + DD + + Sbjct: 415 VAHRTN---LVDHIYTQLTAINIPVNFTGKFTVKNNPLFELLINLGKFLIYKHDDEALIT 471 Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499 +LKSP+F +S + K+ ++ + + +A + ++ + + Sbjct: 472 LLKSPIFAWSHSALLKLKAEKKKEWLFEQICATYAGKVLKRWLEF------------YGT 519 Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 D ++ +L A+ +G+E +D FL+ TL +E + Sbjct: 520 TFDIYSQVLDARTVTT-LAKYYGSETPYYIDIFLDNTLEHECIHD------FIYIFSGED 572 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + S N N V I TVH +KG +SP+VF+VD+ + + G P Sbjct: 573 ATLKIKSKNENGVTISTVHGSKGTQSPIVFIVDSNYVPQNRDIF--------FFTEDGTP 624 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 + ++ R +V ++ K+S + E+ RLLYV +TRA D+L I + + + Sbjct: 625 LLSSETHVR--VVQEMRDVKKESIRYEHLRLLYVALTRAEDELYIMGIGKQAKKNSWYEA 682 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 +V N + + EN L RE + M + Sbjct: 683 CSNGIVKIGSQNQDGAYYYTNDLLYP---IKIKQKVDKSDENPSLHRERDSNRRMKNTQE 739 Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799 + S + N PY + + + ++ + RG +IHK+L+ I + + Sbjct: 740 LQNKESDLANSYEFPYKRDETFDNGIIDDDVTKVSEKTFQIIRGKLIHKILEYISKVEKA 799 Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859 + ++ + + + ++ + ++ LE D +EV V Sbjct: 800 --EKWMNLFLEEYSPELSNEQKNEIKRTVLLFLEKNH-----RADGKNEVEVYF------ 846 Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919 ++ R+D + + I I +YKT ++ Q+ Y++ ++ YP K+ Sbjct: 847 DGKLL--RMDNVKFEKDTITIRDYKTGKDKSVDLA-----IEKQMHRYKEAMQAIYPEKN 899 Query: 920 LVCLLIYV 927 ++ +I++ Sbjct: 900 VITEIIWL 907 >gi|313812190|gb|EFS49904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA1] Length = 810 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 193/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + I L ++RST ILT + + + N + Sbjct: 321 PR--------ARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|257054747|ref|YP_003132579.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] gi|256584619|gb|ACU95752.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] Length = 1090 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 142/1040 (13%), Positives = 292/1040 (28%), Gaps = 156/1040 (15%) Query: 2 KNRFGLSLNE-SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 + R ++ E + + L + + + + + + Sbjct: 111 RRRLAVASGEPTVLTYHAYAGRLLAEYGLRLPVQPGARILSETASWQLAYRVVSSWDADL 170 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR-FNTYKM 119 ++ ++ L +++++ E ++ L ++ R + Sbjct: 171 DTDKAPMTVTEHLLALAGELGEHLVSPERLREYTTWFCDLVENAPRAKGQRAKPKKELLD 230 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 + L YE K+ LDF D + L + + + + Sbjct: 231 IVAAQRLRLQLLPLVEAYEHRKRAEGALDFADQMSLAARLAETQPD---VVASERERYGA 287 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 +L+DE QDT Q ++RSL +P + AVGD Q+IY + GA + R Sbjct: 288 VLLDEYQDTGHAQRVLLRSLFGG--------PAPMPVTAVGDPAQAIYGWRGASAANLPR 339 Query: 240 EKRINQKRATNAGQ--KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 + GQ + SFR+ ++LT+ + + P A+GL +R Sbjct: 340 FTTDFPRLDERTGQPVPAREYGMLTSFRNPPEVLTLANS-IAEPLRAKGL---GVQELRA 395 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 R+ V L VVS+ + + W + D+ +A Sbjct: 396 RADAGPADIRVALLPDVVSEREWVADQIATRWFAERDATGTAPTA--------------- 440 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 VLVR+R D + R + V L D Sbjct: 441 -------------------AVLVRRRVDMAPMAAALRA----RGLPVEVVGLGGLLDEPE 477 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--------- 468 + DL+A R + + V +L + D+ + + E + Sbjct: 478 VADLVATLRVLAEPLSGTAAVRLLTGARWRLGAADLGALWRRAGELSAADDTVVAERAEQ 537 Query: 469 -----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 +++ G ++ + + + + L + + + Sbjct: 538 AGLVDAIDDPGEPSRYSEEGYARIRRLSRELEALRRR-MDQPLPELVADVERTMLLDVEA 596 Query: 518 ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQY----PPTIKRAHSANHNEV 572 ++R G LD F + E + ++L + L + V Sbjct: 597 LARPGAVGRAHLDAFADVVNDYAENSPTATLLSFVDYLAAATRAEDGLEPGEVEVVPDRV 656 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-------MPSLNDDPGIPIWIPQS 625 +++T H+AKGLE +V + + F ++ + D +P + Sbjct: 657 QVLTAHSAKGLEWRIVAVPHLVDRTFPNERKTSSWLKTVTELPAALRGDAQDLPQLALRG 716 Query: 626 KSRNNIVSDLIKHLKK----STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 V + + ++ EE RL YV +TR+ L++ + + Sbjct: 717 GEDRKQVEEALAEHEEGFRRRHAEEERRLCYVALTRSEHCLVVSGYRWGDANATEPKAPS 776 Query: 682 YDMVYDSFHNDER------------VKKIKLTNSINKDEWIAYEWSTHHPENTPLER--- 726 + + E + L + EW P R Sbjct: 777 PFLTEVAERVREDPTVGVVEHWCSEPGENPLAGVSRETEWPVDPLGARRPAVDEGARLVL 836 Query: 727 -------------------------------EETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + + + ++ ++ P K +++ Sbjct: 837 EALEELESGADAETDEEITEEDDPDNWVSDTDVLLAERARAREPQVEIELPGKLSVSQLV 896 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 L D + N RG H L+ F + + + + Sbjct: 897 DLAGEPEDLARRLRRPLPFPPNAYARRGTEFHGWLERRFASDKLFDLDELPGAADADVGD 956 Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS- 874 + + L + R +P V + I + GRID + Sbjct: 957 ADPADLEALKEAFER---SPWAQ-------RVPHDVEVPFSTAIDGITVRGRIDAVFADP 1006 Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKV 932 + ++KT QL+ Y + P + + YV + Sbjct: 1007 DGGWTVVDWKTGALPD---AERMPALAVQLAAYRLAWANLSGAPLEKVRAAFHYVRANRT 1063 Query: 933 FIIPQNKLNKAFAEISTKIP 952 + +P Sbjct: 1064 VRPVDLADADGLRALLRTVP 1083 >gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] Length = 830 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 111/742 (14%), Positives = 216/742 (29%), Gaps = 152/742 (20%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF--L 74 + + P ++ NK + E + +A + ++ ++ L Sbjct: 74 ERGVTPGQILAITFTNKAAAEMRERVAALVGPRANAMWVSTFHSSCVRILRAQAALLPGL 133 Query: 75 TQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIR----------DRFNTYKMFKST 123 F+ + ++ + S DL+ K+ + + Sbjct: 134 NSNFSIYDSDDSRRLLTMISKDLELDTKRFSARLLATHISNLKNELVGPEEAVVAADQDP 193 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L + HY++ + LDF+DLI T LL+ I + H+L+D Sbjct: 194 AELPRLIAKVYGHYQQRLRAANALDFDDLIGETVALLQ---AFPQIAEYYRRRFRHVLVD 250 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q+ ++R L + +P L VGD QSIY+F GA + + +R Sbjct: 251 EYQDTNHAQYMLVRELVGGAGE-SDHAVAPAELCVVGDADQSIYAFRGATIRNIEEFERD 309 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 I L ++RST +IL+ + V S + Sbjct: 310 YP--------DARTILLEQNYRSTQNILSAANSVISKNTGRREKR--------------- 346 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + + + A +A I ++ Sbjct: 347 ------LW-------TDSGEGELIVGYVADNEHDE-------ASFVASEIDRLVDQGET- 385 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + DI V R + + + + + ++D++A Sbjct: 386 --------KFADIAVFYRTNNSSRALEEIF----IRLGVPYKVVGGVRFYERKEVRDIVA 433 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK---------FA 474 R + +++D +S +L +P + + + + Sbjct: 434 YLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGKVALLN 493 Query: 475 NCGISKFQHVIKYIHELIHI-----AQFCSPHDF------FTLILGAKKGRQQFISRFGN 523 ++ + L + A P + +L R + + Sbjct: 494 TRSQKAIASFLEMMDGLRALLPTPAADEDEPFELGDIGEVAEAVLERTGYRAELAASSDP 553 Query: 524 E---VIDVLDEFLNFTLRNE--------------------QNSYSSLQELISELEQYPPT 560 + +D L+E ++ + L + LE+ Sbjct: 554 QDGARLDNLNELVSVAREFSSDARNAAGLIDPDDEETAAMREGEPDPGSLAAFLERVSLV 613 Query: 561 IKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 ++ V +MT+HTAKGLE PVVF+ F H Sbjct: 614 ADADQLPDSDDGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP----------- 662 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + E RL YVG+TRA +L + + S + Q Sbjct: 663 -----------------------AELSEERRLAYVGITRARQRLYLTRAIMRSAWGQPIQ 699 Query: 679 RTWYDMVYDSFHNDERVKKIKL 700 + + + ++ Sbjct: 700 NPASRFIQEIPEDLINWRREDP 721 >gi|120610596|ref|YP_970274.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1] gi|120589060|gb|ABM32500.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1] Length = 818 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 97/588 (16%), Positives = 187/588 (31%), Gaps = 144/588 (24%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE ++ V+DF +L++ + +LL+ D IR + HIL+DE QDT+ + Sbjct: 196 ELYQLYEEQCQREGVVDFGELMLRSYELLRDND---PIRAHYQRRFQHILVDEFQDTNKL 252 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ + D + ++ AVGD+ QSIY+F GA + R R Sbjct: 253 QYAWLKQIAGDVV--DGRLVTHGSVLAVGDDDQSIYAFRGARVGNMQDFVREFDVR---- 306 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS ++IL + + S G + Sbjct: 307 ----HQIKLEQNYRSYSNILDSANALISHNSRRLGKNL---------------------- 340 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + D A+ + I + D Sbjct: 341 -----RTTQGPGEPVRVYEAPTDLAE--------AQWMVDEIRQLARND---------GF 378 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + ++I VL R + +I + + + IK +A R + + Sbjct: 379 ERREIAVLYRSNAQSRVIESAL----FNAAVPYRVYGGLRFFERAEIKHALAYLRLLENP 434 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF+ ++ P + + R ++++ + + + + Sbjct: 435 HDDTSFMRVVNFPPRGIGARTVEVLQDAARQAGCSLHDAVSAVPGKAGANLGAFVAMVDV 494 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539 + Q + +L + + + + G + ++ LDE +N Sbjct: 495 MREQTQGQTLRGIIGQMLESSGLVEHYRAEKEGADRLENLDELINAAESFVTQEGFGRDA 554 Query: 540 ------------------------------------EQNSYSSLQELISELEQYPPTI-K 562 + ++ +L L + L Sbjct: 555 VALPVDEHGASLRQSPASQGIDPSLPVVDEPLPGGVDADTGETLSPLAAFLTHAALEAGD 614 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 A + V++MTVH +KGLE VF+ +F H++ Sbjct: 615 NQAQAGQDAVQLMTVHASKGLEFDAVFIGGMEEGLFPHENS------------------- 655 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + EE RL+YV +TRA +L + Sbjct: 656 ---------------MSDRDGLEEERRLMYVAITRARKRLYLSHSQTR 688 >gi|326318047|ref|YP_004235719.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374883|gb|ADX47152.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 818 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 97/588 (16%), Positives = 187/588 (31%), Gaps = 144/588 (24%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE ++ V+DF +L++ + +LL+ D IR + HIL+DE QDT+ + Sbjct: 196 ELYQLYEEQCQREGVVDFGELMLRSYELLRDND---PIRAHYQRRFQHILVDEFQDTNKL 252 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ + D + ++ AVGD+ QSIY+F GA + R R Sbjct: 253 QYAWLKQIAGDMV--DGRLVTHGSVLAVGDDDQSIYAFRGARVGNMQDFVREFDVR---- 306 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS ++IL + + S G + Sbjct: 307 ----HQIKLEQNYRSYSNILDSANALISHNSRRLGKNL---------------------- 340 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + D A+ + I + D Sbjct: 341 -----RTTQGPGEPVRVYEAPTDLAE--------AQWMVDEIRQLARND---------GF 378 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + ++I VL R + +I + + + IK +A R + + Sbjct: 379 ERREIAVLYRSNAQSRVIESAL----FNAAVPYRVYGGLRFFERAEIKHALAYLRLLENP 434 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF+ ++ P + + R ++++ + + + + Sbjct: 435 HDDTSFMRVVNFPPRGIGARTVEVLQDAARQAGCSLHDAVSAVPGKAGANLGAFVAMVDV 494 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539 + Q + +L + + + + G + ++ LDE +N Sbjct: 495 MREQTQGQTLRGIIGQMLESSGLVEHYRAEKEGADRLENLDELINAAESFVTQEGFGRDA 554 Query: 540 ------------------------------------EQNSYSSLQELISELEQYPPTI-K 562 + ++ +L L + L Sbjct: 555 VALPVDEHGASLRQSPASQGIDPSLPVVDEPLPVGVDADTGETLSPLAAFLTHAALEAGD 614 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 A + V++MTVH +KGLE VF+ +F H++ Sbjct: 615 NQAQAGQDAVQLMTVHASKGLEFDAVFIGGMEEGLFPHENS------------------- 655 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + EE RL+YV +TRA +L + Sbjct: 656 ---------------MSDRDGLEEERRLMYVAITRARKRLYLSHSQTR 688 >gi|261391767|emb|CAX49221.1| DNA helicase II [Neisseria meningitidis 8013] Length = 735 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|254428788|ref|ZP_05042495.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881] gi|196194957|gb|EDX89916.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881] Length = 757 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 122/740 (16%), Positives = 234/740 (31%), Gaps = 132/740 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + + L S Sbjct: 68 GAGSGKTRVLVHRIAWQIATEQASPFGILAVTFTNKAAAEMRGRIEQLLDMSADGMWVGT 127 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINKK-SPDLKEKLKKSQDE-----FIKI 110 F + L Q F + K+ S +L ++ Sbjct: 128 FHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSKELGLDEQRWPARQATWFINGQ 187 Query: 111 RDRFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 +D + L + + YE+A ++ ++DF ++++ +L + D + Sbjct: 188 KDEGLRARHMDVGGDLFALTMQKIYFAYEDACERGGLVDFNEMLLRVLELFRDND---NL 244 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R + HIL+DE QDT+ IQ+ +R L ++ + VGD+ QSIY + Sbjct: 245 RGHYQRRFRHILVDEFQDTNSIQYAWLRLLADE----------NNAVTIVGDDDQSIYGW 294 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + R I L ++RST IL + V + G Sbjct: 295 RGAKIENIHKFSRDFP--------DTRTIRLEQNYRSTGTILKAANAVIGNNSDRLGK-- 344 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + S F+ + + AR I Sbjct: 345 -------------------ELW-------TEGGDGDPIRLYSGFNEVDE-------ARFI 371 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A + + T +++ VL R + ++ I Sbjct: 372 AGRMDKLFQEGTA----------RREMAVLYRSNAQSRVLEEAF----LQAGIPYRIYGG 417 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + + IK+ +A R + + D +F ++ +P + + R + +++E Sbjct: 418 QRFFERVEIKNALAYLRLLSHRHADAAFERVVNTPTRGIGNKTLETLREVARQRSVSLWE 477 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFIS 519 Q + I+ + I +L + S + ++ A + + Sbjct: 478 AAQAVVGEQLLSARAINALAVFLNLIAQLEQQCEGLSLAETTEHVIEASGLLEFHGKEKG 537 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G + ++ L E L+ T S L L + L+ + A+ + V++MT+ Sbjct: 538 EKGQQRLENLRELLSATREFGDEDEDSELDSLTAFLDHAALESGEGQADAHEDAVQMMTL 597 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVF+ +F HK + Sbjct: 598 HSAKGLEFPVVFITGMEEGLFPHKMSSEEPG----------------------------- 628 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 E RL YVG+TRA +L + + N + + + Sbjct: 629 -----RLAEERRLCYVGLTRAMRELYLTHAESRRLYGNENYNPPSRFLREIPAETLEEIR 683 Query: 698 IKLTNSINKDEWIAYEWSTH 717 + S T Sbjct: 684 ARAGFSRPMGGAARPIRETE 703 >gi|163803195|ref|ZP_02197077.1| DNA helicase II [Vibrio sp. AND4] gi|159173016|gb|EDP57850.1| DNA helicase II [Vibrio sp. AND4] Length = 724 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 108/693 (15%), Positives = 207/693 (29%), Gaps = 136/693 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53 G ++ L+++ W + Q S + + + + L Sbjct: 31 GAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTNKAAAEMRGRIEELMMGSTGGMWNGT 90 Query: 54 ------QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107 + + + K +I + ++ + Sbjct: 91 FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAQNLDDKQWPARQVAWWINAK 150 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + + L Y+EA + ++DF ++++ ++LL+ Sbjct: 151 KD--EGLRPSHIDAYHDPVTKTYLQLYTAYQEACDRAGLVDFAEILLRAHELLRDN---K 205 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 ++R HIL+DE QDT+ IQ+ +R + + VGD+ QSIY Sbjct: 206 FVREHYQARFKHILVDEFQDTNNIQYAWLRMMAG----------PECHVMIVGDDDQSIY 255 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ + + + + I L ++RST IL + + + G Sbjct: 256 GWRGAKVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNALIANNTERMGK 307 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 +LW + S S ++ L + AR Sbjct: 308 ---------------------ELW-------TDGVVGEPISIYSAYNELDE-------AR 332 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I D +L R + ++ + Sbjct: 333 FAVNKIKEWQDKGGAL----------NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIY 378 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 + IKD ++ R I ++ DD +F ++ +P + + I R T+ Sbjct: 379 GGMRFFERQEIKDALSYMRLIANRNDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTM 438 Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E A I+ + L H ++ + Sbjct: 439 WEASVAMLDEKVLAGRAAGALSRFIELVTALEDDTMEMPLHHQTDHVIKYSGLFSMYEQE 498 Query: 521 FGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575 G + I+ L+E + T + E+ + L + L + + V++M Sbjct: 499 KGEKSKARIENLEELVTATRQFEKPEEADDMSLLTAFLTHAALEAGEGQADEFEDAVQLM 558 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P+VF+V +F + Sbjct: 559 TLHSAKGLEFPLVFMVGVEEGMFPSQMS-------------------------------- 586 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L I Sbjct: 587 --AEEAGRLEEERRLCYVGMTRAMQKLYIIYAE 617 >gi|163748667|ref|ZP_02155920.1| DNA helicase II [Shewanella benthica KT99] gi|161331777|gb|EDQ02581.1| DNA helicase II [Shewanella benthica KT99] Length = 721 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 101/595 (16%), Positives = 194/595 (32%), Gaps = 120/595 (20%) Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 +R + F L + Y+E+ ++ ++DF ++++ ++L + + Sbjct: 154 LRPKHIDAAGFPIEQNLLQ----IYQVYQESCDRSGLVDFAEILLRAHELWLNKPH---V 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 +IL+DE QDT+ IQ+ IR L + + VGD+ QSIY + Sbjct: 207 LKHYQDRFKNILVDEFQDTNAIQYAWIRVLAGE----------GANVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + K + I L ++RST IL + + + + G Sbjct: 257 RGAQVENLHKFLVDFPK--------ATTIRLEQNYRSTGHILKASNALIANNPDRLGKK- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + S F+ + + AR I Sbjct: 308 --------------------LW-------TQDKDGEPISIYCAFNEMDE-------ARFI 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 IS+ +L R + ++ ++ Sbjct: 334 VGRISDWHDMGGGL----------SGCAILYRSNAQSRVLEEAL----LHKGLAYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD M+ R I +++DD +F ++ +P + + R + T+++ Sbjct: 380 LRFFERQEIKDAMSYLRLINNKDDDAAFERVVNTPARGIGGRTLDILRATARQQQLTLWQ 439 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + + I E+ Q + H I+ + + + G Sbjct: 440 TCLRAIEEKLLSGRAANAVRGFMDLIVEMQQDTQEMTLHRTTDHIIAKSGLKAMYEAEKG 499 Query: 523 NEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTV 577 + + LDE + + EL + L A + V++MT+ Sbjct: 500 EKARSRVENLDELVTAARTFIMPEEIEDMGELSAFLSHAALEAGEGQADAFTDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVF+ +F + Sbjct: 560 HSAKGLEFPVVFMSGVEEGLFPSQMAMDEG------------------------------ 589 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 +E RL YVGMTRA ++L I + N + + Sbjct: 590 ----DRLDEERRLCYVGMTRAMEKLYITHAETRRIYGRENISRPSRFIKEIPTEH 640 >gi|153834693|ref|ZP_01987360.1| DNA helicase II [Vibrio harveyi HY01] gi|148868889|gb|EDL67949.1| DNA helicase II [Vibrio harveyi HY01] Length = 723 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 179/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ ++R HIL+DE QDT+ I Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 229 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 310 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R I ++ Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLIANR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R T++E A Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ + L H ++ + G + I+ L+E + T + E+ Sbjct: 462 IELVTALEDDTIEMPLHHQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 PEEAEDMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 +L I Sbjct: 608 QKLYITYAE 616 >gi|28493047|ref|NP_787208.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist] gi|28476087|gb|AAO44177.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist] Length = 743 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 103/588 (17%), Positives = 194/588 (32%), Gaps = 114/588 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 ++ Y+E K+ DF+DLI T LL+K I ++L+DE QD Sbjct: 181 QFILHVFRRYQEILKEANAFDFDDLISETVFLLQKSPE---ISAMYRNRWKYLLVDEYQD 237 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +I LT+ + L AVGD QSIY+F GA+ ++ + Sbjct: 238 TNHAQYRLILELTKGDKSDMS-------LTAVGDSDQSIYAFRGADIANIVNFENDFP-- 288 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RS +IL + + S +N + + Sbjct: 289 ------DCHTILLEQNYRSCQNILLAANALISNNQNRKDKN------------------- 323 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + ++ + SSA R +A + +++ Sbjct: 324 --LWS------ELGAGEKVIAYCA--------SSAEEEGRFVADRVRHLVDQGESL---- 363 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 DI V R + +I I + IKD++A Sbjct: 364 ------SDIAVFYRSNTQSRVIEESL----IRQSIPYRVVGGTKFYERAEIKDILAYLTV 413 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF-ANCGISKFQHVI 485 I++ +D L+ +L P ++ T+ + + + + + Sbjct: 414 IVNPDDTLALRRILNVPKRGVGTVSENRLVEFASARGITLMQALSRIDEINIQPSAKSAL 473 Query: 486 KYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNE 540 + + L++ ++ +L A +F + + + +F++ Sbjct: 474 RDLFYLLNRFAGSSMPANELLDDLLKATDLLSRFNNTDDPQNEARKINIGDFVDSVEDFA 533 Query: 541 QNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + L + ++ + T ++ +MT+H AKGLE VFL + Sbjct: 534 KENPGGTLSDFMTNIALM--TSYDQSDDAPGQITLMTLHMAKGLEFDFVFLTGLEEGILP 591 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H+ K +K+ EE RL YVGMTRA Sbjct: 592 HEMSLK----------------------------------EKNGIEEERRLAYVGMTRAK 617 Query: 660 DQLII---CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 L + ++ + R W ++ R + T + Sbjct: 618 KVLHLSFSSYRKRYTDGVRLPSRFWDEIPQHLLRWHSRFTHKRFTGPL 665 >gi|300214971|gb|ADJ79387.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713] Length = 744 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 119/807 (14%), Positives = 243/807 (30%), Gaps = 133/807 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 30 GAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERVNNLMGEGAEDIWVST 89 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + ++ +++ +K+ L + K R + + Sbjct: 90 FHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQVLNDLNIDTKKYDPRAILSVISNA 149 Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 L + Y+ N +DF+DLI+ T L + + Sbjct: 150 KNDLLDPKDYAQQANGPFEEIVSKAYFEYQNQLANNQAMDFDDLIMQTIRLFNESPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 ++ ++I +DE QDT+ Q+E++ L + R L VGD QSIY Sbjct: 208 -LEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKY----------RNLCVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + ++ + ++I+L ++RST +IL + V N + + Sbjct: 257 WRGANMENIMNFEEDYP--------DATVIKLEQNYRSTKNILAAANNVIENNVNRKDKT 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 309 ---------------------LW-------TDNKQGDKIHYYRANNANEE-------AYY 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I I + D +L R + +I I Sbjct: 334 VVKKIQEQIRNNGR---------HYGDFAILYRTNAQSRIIEETF----VKTNIPYKLVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I D +A R + + D +SF ++ P + + K+ + ++ Sbjct: 381 AHKFYDRKEIMDTLAYLRLVTNPADSMSFERIVNEPKRSIGSVTVGKLRTFSQIHGMSML 440 Query: 468 EYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + A ++ + + I +L + + + IL + Sbjct: 441 EASKSAALAGVSAKASNELEKFAEMIEQLHEYQKAHNVTEVTERILDVTGYKANLQREDT 500 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVRIM 575 E ++ L+EFL T + +Q+ +E + L + +EV +M Sbjct: 501 LENRNRLENLEEFLTVTKQFDQDWEPEDEESDPFVDFLADLALVSDQDSVEEEPDEVTLM 560 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVVFL+ +F Sbjct: 561 TLHAAKGLEFPVVFLMGLEEGIFPLS---------------------------------- 586 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + ++ EE RL YVG+TRA ++L + + KS + + + Sbjct: 587 RAVMDENELEEERRLAYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEELIQS 646 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + ++ + + T+++ + + K Sbjct: 647 DNQTVASTTLTSKRTRSREVPFSKKPKYRMPAGTVERPKETGADKQSWNIGDKISHKAWG 706 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR 782 + G+ + + + R Sbjct: 707 TGTIVKVSGDGEDTELDIAFEGKGIKR 733 >gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A] gi|298494234|gb|EFI29528.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A] Length = 695 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 108/684 (15%), Positives = 190/684 (27%), Gaps = 136/684 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + L ++ Sbjct: 79 AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + + + Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L N P L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL+ + V + + Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + I+D++A R Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + A Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ EL + +L R++ + + +D L+E ++ Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542 Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581 + L LE+ H V +MT+HTAK Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF+ +F H Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629 Query: 642 STQEEYNRLLYVGMTRASDQLIIC 665 E RL YVG+TRA +L + Sbjct: 630 -ELSEERRLAYVGITRARQRLYVS 652 >gi|311896487|dbj|BAJ28895.1| putative ATP-dependent DNA helicase PcrA [Kitasatospora setae KM-6054] Length = 885 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 122/731 (16%), Positives = 222/731 (30%), Gaps = 151/731 (20%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P VS + + + + + + Sbjct: 161 AAGEMRERVEALVGPRAKAMWVSTFHSACVRILRREAKQL-----GMNSSFSIYDSADSQ 215 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + K +LK +L TY S Sbjct: 216 RLMALVCRDLDLDP-KQFPPKSFTSKISNLKNELIDE-----------ETYADQASNPTE 263 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 LA+ Y+ ++ LDF+D+I+ T +LL+ + + HIL+DE Q Sbjct: 264 KKLAEAYF-LYQRRLREANALDFDDIIMATVNLLQAFPA---VAEHYRRRFRHILVDEYQ 319 Query: 187 DTSLIQWEVIRSLTE----------------DFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 DT+ Q+ ++R L+ + + P L VGD QSIY+F Sbjct: 320 DTNHAQYTLVRELSGGSAGQAPRMTADGEYVNPAEAQLAQLPPAELCVVGDADQSIYAFR 379 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + +L+ + + I L ++RST ILT + V N + + Sbjct: 380 GATIRNILQFEEDYPN--------ATTILLEQNYRSTQTILTAANSVIERNTNRRKKN-- 429 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 LW + +Q D + A+ IA Sbjct: 430 -------------------LW-------TAGDQGEQVVGYVADDEHGE-------AQFIA 456 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + + D+ + R + + + + Sbjct: 457 EEIDRLTDGGH---------ARPGDVAIFYRTNAQSRVFEEVF----IRVGLPYKVVGGV 503 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470 + +KD++A R + + ED + +L P E I + Sbjct: 504 RFYERKEVKDVLAYLRVLSNPEDTVPLRRILNVPKRGIGERAEAMIDALASRERISFAAA 563 Query: 471 QKF-------ANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFG 522 + A + + + + L + + + P +L + S Sbjct: 564 LRRVDEAYGMAARSANAVKKFNELLAGLRQVVESGAGPAAVLEAVLEETGYLAELQSSTD 623 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYS-----------SLQELISELEQYPPTIKRAHSAN 568 + ++ L E + L E++ SL + + + + + + Sbjct: 624 PQDETRVENLQELASVALEYEKDPGERPEGDEGPPVGSLADFLERVALVADSDQIPDDED 683 Query: 569 HNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + V +MT+HTAKGLE PVVFL +F H Sbjct: 684 GSGVITMMTLHTAKGLEFPVVFLTGMEDGIFPHMRALD---------------------- 721 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687 K EE RL YVG+TRA +L + + S + + + + Sbjct: 722 ------------KVKELEEERRLAYVGLTRARQRLYLTRSVLRSAWGQPSYNPASRFLEE 769 Query: 688 SFHNDERVKKI 698 K+ Sbjct: 770 IPEKLIEWKRT 780 >gi|239998017|ref|ZP_04717941.1| UvrD [Neisseria gonorrhoeae 35/02] gi|240113875|ref|ZP_04728365.1| UvrD [Neisseria gonorrhoeae MS11] gi|240116607|ref|ZP_04730669.1| UvrD [Neisseria gonorrhoeae PID18] gi|240124760|ref|ZP_04737646.1| UvrD [Neisseria gonorrhoeae SK-92-679] gi|268593866|ref|ZP_06128033.1| DNA helicase II [Neisseria gonorrhoeae 35/02] gi|268599941|ref|ZP_06134108.1| DNA helicase II [Neisseria gonorrhoeae MS11] gi|268602276|ref|ZP_06136443.1| DNA helicase II [Neisseria gonorrhoeae PID18] gi|268683334|ref|ZP_06150196.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679] gi|268547255|gb|EEZ42673.1| DNA helicase II [Neisseria gonorrhoeae 35/02] gi|268584072|gb|EEZ48748.1| DNA helicase II [Neisseria gonorrhoeae MS11] gi|268586407|gb|EEZ51083.1| DNA helicase II [Neisseria gonorrhoeae PID18] gi|268623618|gb|EEZ56018.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679] Length = 735 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|240015007|ref|ZP_04721920.1| UvrD [Neisseria gonorrhoeae DGI18] gi|240122076|ref|ZP_04735038.1| UvrD [Neisseria gonorrhoeae PID24-1] gi|254494631|ref|ZP_05107802.1| DNA helicase II [Neisseria gonorrhoeae 1291] gi|226513671|gb|EEH63016.1| DNA helicase II [Neisseria gonorrhoeae 1291] Length = 735 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|303253078|ref|ZP_07339228.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248354|ref|ZP_07530377.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648063|gb|EFL78269.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855092|gb|EFM87272.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 732 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 112/551 (20%), Positives = 191/551 (34%), Gaps = 121/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + +LDF +L+I +L + + I + Q ILIDE QDT+ I Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQLFQQILIDEFQDTNNI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++IR L + + VGD+ QSIY + GA+ + + R QK Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ S E+ G + LW Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q + F+ L + AR +A I + Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + VL R + +I I + IKD +A R I ++ Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484 +DD +F ++ +P E + I R T+++ IQ + + S Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRDRQITLWQAIQVAVQEEQLSGRAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 ++ I+ L + + ++ + + G + I+ L+E + T + Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E S L ++ S + + V +MT+H+AKGLE P VF+V + Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVG+TR Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 609 AKKKLTISYAE 619 >gi|149928113|ref|ZP_01916360.1| UvrD/REP helicase [Limnobacter sp. MED105] gi|149823199|gb|EDM82436.1| UvrD/REP helicase [Limnobacter sp. MED105] Length = 743 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 95/578 (16%), Positives = 189/578 (32%), Gaps = 110/578 (19%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 +D+ K ++ + L YE ++ V+DF +L++ + +LL Sbjct: 143 VGSAKDQGLRPKDVEAHDEYHRMMVRLYEAYEAQCQREGVVDFAELLLRSFELLGANPA- 201 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 +R +IL+DE QDT+ +Q+ ++ L +FAVGD+ QSI Sbjct: 202 --LREHYQARFKYILVDEFQDTNSLQYNWLKRLAG----------PQGCIFAVGDDDQSI 249 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA +++ + + + I+L ++RS ++L + + + + G Sbjct: 250 YAFRGARVANMVQFENDFNVQ--------NRIKLEQNYRSVGNVLKAANVLIAHNKARLG 301 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 +LW ++ + + D A Sbjct: 302 K---------------------ELW------TEAGEGEAIRVYEATSDQDE--------A 326 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I I ++ + DI +L R + ++ + + Sbjct: 327 AFIIDRIKKLVLEE---------GYGRSDIAILYRSNAQSRVVEQAL----FNAGMPYRV 373 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 + IK +A R + + +DD SF ++ P + ++ + + Sbjct: 374 YGGLRFFERAEIKHALAYLRLMDNADDDNSFSRVVNFPARGIGARSVEQLQDISTAQGTS 433 Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNE 524 +Y I + + + I + + S D ++ F + G + Sbjct: 434 LYRAIHRMEGRAQAGLKKFADLIERMRFETRGLSLADLVDKVINESGLVAHFQADKDGED 493 Query: 525 VIDVLDEFLNFTLRNE-------------QNSYSSLQELISELEQYPPTI-KRAHSANHN 570 ++ L E +N + + L L A +A Sbjct: 494 RVENLKELVNAAASFAIAEGYYQDAAATMVDEEKLITPLADFLSHASLEAGDNAAAAGQE 553 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT H+AKGLE VF+ +F H++ + Sbjct: 554 AIQLMTAHSAKGLEFKCVFVTGLEEGLFPHENSIGNSVEGGDGTSV-------------- 599 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 EE RL+YV +TRA +QL + Sbjct: 600 -----------EAVEEERRLMYVAITRAREQLFLSHAQ 626 >gi|120436669|ref|YP_862355.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella forsetii KT0803] gi|117578819|emb|CAL67288.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella forsetii KT0803] Length = 787 Score = 283 bits (724), Expect = 1e-73, Method: Composition-based stats. Identities = 112/678 (16%), Positives = 221/678 (32%), Gaps = 134/678 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y + K +DF+DL++ TN+LL + + +K +IL+DE QDT+ Sbjct: 189 LGEIYKAYVDRCFKAGAMDFDDLLLKTNELLNRFPE---VLHKYQSRFKYILVDEYQDTN 245 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++R+L++ F + + VGD+ QSIY+F GA +L ++ Sbjct: 246 HSQYLIVRALSDKF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYDN--- 292 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + L ++RS+ +I+ + + + Sbjct: 293 -----VQMYRLEQNYRSSKNIVEAANSIIDKNQTKLDKI--------------------- 326 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W ++ P+ D R +A +I F N + Sbjct: 327 VW------TANEDGPKIIVNRLLTDGEEG--------RYVASSI---------FENKMQN 363 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D +L R + + R I IKD++A R IL Sbjct: 364 QMDNGDFAILYRTNAQSRAMEDALR----KKDIPYRIYGGLSFYQRKEIKDVLAYLRLIL 419 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA-------NCGISKF 481 + +D+ + ++ P + + ++ +++E I+ +K Sbjct: 420 NPKDEEALKRVINYPSRGIGQTTMDRLAIAANQHKISMFEVIKNIDKLELKINRGTQTKL 479 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 + + I + + + Q+ E I+ ++E LN Sbjct: 480 VNFVNMIRSFAIMNETSDAFQIAETVTKKTGLVQELKKDGTPEGIARIENIEELLNGMRD 539 Query: 539 NEQNS------YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 + SL E + ++ T + + + V +MT+H AKGLE P V++V Sbjct: 540 FVEGQKELADATGSLSEFLEDVALA--TDLDNDTGDDDRVALMTIHLAKGLEFPYVYIVG 597 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F +S EE RL Y Sbjct: 598 MEEDLFPSGMSMNT----------------------------------RSELEEERRLFY 623 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA Q + + K + E + L + +D++ Sbjct: 624 VAITRAEKQAYLTYTLSRYRWGKLVDAEPSRFI-------EEIDDQYLDLMVPQDDYKYK 676 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 +++ + ++Q + P P + + + L P+ + N Sbjct: 677 PLIDTDIFGDAVDKSK-LRQTKPKSGTPPPAHKPSEEQLRKLRKLKPAATEPSKARNTLD 735 Query: 773 LLSDNQ----TFNRGLII 786 L N+ F RG ++ Sbjct: 736 LAEGNEVEHMRFGRGTVM 753 >gi|237746997|ref|ZP_04577477.1| DNA helicase II [Oxalobacter formigenes HOxBLS] gi|229378348|gb|EEO28439.1| DNA helicase II [Oxalobacter formigenes HOxBLS] Length = 762 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 98/610 (16%), Positives = 200/610 (32%), Gaps = 144/610 (23%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + ++R + ++ L YEE ++ V+DF +L++ + +LL Sbjct: 138 RNLMYFINGAKERGFRASVIEAQDDYERKMVELYGLYEEQCQREGVVDFGELLLRSCELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 +K V +R + HIL+DE QDT+ +Q++ ++ + + +FAVG Sbjct: 198 EKNPV---LREHYQERFRHILVDEFQDTNNLQYKWLKLMAGNNTA----------IFAVG 244 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA +L + + ++I L ++RS +IL + + + Sbjct: 245 DDDQSIYAFRGANVGNMLSFQHDFNVQ--------NLIRLEQNYRSHGNILEAANTLIAH 296 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + H + G+ V + Sbjct: 297 NTHRLGKNL-------HTDAGEGEPIRVC----------------------------EAP 321 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 S + I ++++IG + +I VL R + +I Sbjct: 322 SDLNEVQWILDEVNHLIGDG----------MSRSEIAVLYRSNAQSRVIEHGL----FSA 367 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-Q 459 I + IK +A + I + +++ +F+ ++ P + ++ Sbjct: 368 GIPYRVYGGLRFFERAEIKHAIAYLQLIDNPDNNAAFLRVVNFPARGIGARTVEQLQEMS 427 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 R ++Y I + + ++ I + + + L + S Sbjct: 428 RIHDVSLYGAIPYVSGKAGTALASFVRIIQTIRAEVKEMNLPSLIQTTLEKSGLLLHYQS 487 Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549 G + I+ L++ ++ SL+ Sbjct: 488 EKEGADRIENLEQLVSAATLFLSEEGFSLEAPALLTEKMTDGLNAGNPLLAVDSVIGADI 547 Query: 550 --------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + L + + +++MTVH+AKGLE VF+ +F H Sbjct: 548 PLPMIMSPLAAFLTHASLEAGENQADEGQDALQLMTVHSAKGLEFDAVFITGLEEGLFPH 607 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 ++ ++ EE RL+YV +TRA Sbjct: 608 ENS----------------------------------AREEDGLEEERRLMYVAITRAKK 633 Query: 661 QLIICKHSNT 670 +L + Sbjct: 634 RLYLSYAQTR 643 >gi|126662607|ref|ZP_01733606.1| ATP-dependent helicase [Flavobacteria bacterium BAL38] gi|126625986|gb|EAZ96675.1| ATP-dependent helicase [Flavobacteria bacterium BAL38] Length = 1062 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 145/868 (16%), Positives = 304/868 (35%), Gaps = 106/868 (12%) Query: 82 KNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137 K+ ++ +++ D ++ + S + + + Y+ F L L+L + + Sbjct: 284 KSPYSKSVSQFDKDFIDENASEILASVVAINEKAGKISMYEAFLQNLNPLSLLNTIYQEF 343 Query: 138 EEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 ++ +++ ++ DF +I N + +I ++ ++ H IDE QDTS++QW+ Sbjct: 344 KQIQEEQNLVSISDFNKIIHNEIQ----NQPAPFIYERLGEKYRHYFIDEFQDTSVMQWQ 399 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 + L ++ G++ TL VGD KQ+IY + G + ++ + + ++K + + Sbjct: 400 NLIPLIDNALSGQDDFGQQGTLMLVGDPKQAIYRWRGGKAEQFIDLAKEDKKHNPFSNKD 459 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + L ++RS ++++ + F + ++ + H+ + G V L Sbjct: 460 KETLRLGTNYRSFSEVIHFNNAFFYQLSDKFQNEDYKNLYENLSHQEVNSKKGGYVNLSF 519 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 V + +++ D+ + TI I + Sbjct: 520 IEVPEDETEVEGFD------SDNDSITIKDKYYLNQTLRTIEKCIANG----------FE 563 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KDI++L R + + + ++ ++ ++ + +K L+AL R++ + + Sbjct: 564 YKDIVLLTRTKAPGIKLANFLTE----NSVPILSSETLLIQNATEVKLLIALLRYLKNPK 619 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492 DD S V L + I ++++I + + + +K I I Sbjct: 620 DDESKVYFL------------YFIAKYLQSELEIHDFILAAKDKNSEELESFLKTIGIEI 667 Query: 493 HIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550 S ++ IL A + + L FL+ L + SS+ + Sbjct: 668 SFKNCKKKSLYEAVE-ILIATFLNDKVNTS-------YLQYFLDLVLEKDVKVQSSISDF 719 Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + ++ N VRIMT+H +KGLE PVV K + Sbjct: 720 LEYWDKIGYQKSIPSPEGTNAVRIMTIHKSKGLEFPVVIFPFAEEDFSRKIKDKLWIPLE 779 Query: 611 SLNDDPGIPIWIPQSKSRN--NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 N D + + + N + + + + +LYV +TRA +QL + + Sbjct: 780 DSNIDLPKALINNRKEVETYGNEAKTIFQTKNQEEVLDTINVLYVALTRAEEQLYVISNK 839 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + + + ++ K E E+ P + + Sbjct: 840 LVTKKGDLVTN------------NLSYYFLEFLQICEKYEETKLEYEFGTPTRISVNKAH 887 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788 K K LNP I + L N G I+H+ Sbjct: 888 QGKNNQIGIVTHK---------------LNPKNIKIAQREALMWGTLQQDAINFGNILHE 932 Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 ++ I + I L + +I +++ + + D ++ Sbjct: 933 IMAFIH--TKEDVDLAIQK--ATEFGLITFSQNPIFKETIGKIVNHEELNLFF--DVEAK 986 Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908 V I K + + D++ I ++ +YKT H AQL YE Sbjct: 987 VYNEQNI---IKKATKNSKPDRVVIKDNLAYLLDYKTG--------EKHNKHKAQLEEYE 1035 Query: 909 KILKDS-YPNKSLVCLLIYVSEPKVFII 935 L++ Y + +LIY+ + I Sbjct: 1036 LALQEMNYT--VVKKVLIYI--GESIEI 1059 >gi|260892971|ref|YP_003239068.1| UvrD/REP helicase [Ammonifex degensii KC4] gi|260865112|gb|ACX52218.1| UvrD/REP helicase [Ammonifex degensii KC4] Length = 707 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 111/741 (14%), Positives = 224/741 (30%), Gaps = 137/741 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L Y+ + + Y V + + +L Sbjct: 27 GAGSGKTRVLTYRIAYLITYRGVPPEAILALTFTNKAAEEMRARVTSLLPREAEDLWVMT 86 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK------- 118 F + L Q+ ++ D + L + + + ++ Sbjct: 87 FHAACARLLRQEIHHLGR--DRDFAIYDEDDRRALMRECLRELDLDEQRFPPAGIIGAIS 144 Query: 119 -----------MFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 M + + + A Y++ ++ LDF+DL++ L ++ Sbjct: 145 WAKNWLVTPEIMAERARSIYEEKVAKIFALYQQKLRQYNALDFDDLLVEAVRLFREHPE- 203 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + + + +IL+DE QDT+ Q+ + L + R + VGD Q+I Sbjct: 204 --VLARWQRRFRYILVDEYQDTNHAQYVWLNLLAQ----------GHRNITVVGDPDQAI 251 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L +R + +I+L ++RSTA IL + D++ + + Sbjct: 252 YGWRGADIRNILSFERDYP--------EARVIKLEKNYRSTAPILALADEIIKYNQLRKE 303 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + D + + A Sbjct: 304 KVLRPVKP----------------------------GGELPVVYVATDEVGE-------A 328 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 +A TI + + +D VL R + ++ + I Sbjct: 329 NFVAETIKRLRAS---------HGYSWRDFAVLYRTNAQSRVLEEVF----LVAGIPYFI 375 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-- 464 IKD++A R +++ D LS ++ P E ++ Sbjct: 376 VGGVQFYARKEIKDVLAYLRLVVNPADALSLKRVINVPPRGIGEGYYNRLLNFASSQGLS 435 Query: 465 -----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 E I + + + + + EL A IL R + Sbjct: 436 PALALLQAEDIPGLPRRVKAAMRELGELLTELRSRAM-GPVKPLVEEILSRTGYRTHLLK 494 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576 E ++ L E ++ + +L + ++ + + K + V +MT Sbjct: 495 EGTPEALARLENLQELISVAWEFDMEVGGNLSDFLASIALFSEVDKYDPET--DAVVLMT 552 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE PVVFLV +F H Sbjct: 553 LHSAKGLEFPVVFLVGMEEGLFPH----------------------------------AR 578 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 ++ EE RL YVG+TRA ++L + + ++ + + + Sbjct: 579 CLGDRAALEEERRLCYVGITRAKERLYLVRSQERRLYGEARANPPSRFLREIPAELYELY 638 Query: 697 KIKLTNSINKDEWIAYEWSTH 717 + ++ E Sbjct: 639 SPPPVPACSERAAEDLEPGDR 659 >gi|254508570|ref|ZP_05120687.1| DNA helicase II [Vibrio parahaemolyticus 16] gi|219548512|gb|EED25520.1| DNA helicase II [Vibrio parahaemolyticus 16] Length = 723 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 98/549 (17%), Positives = 183/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ IR HIL+DE QDT+ I Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRD---KKHIREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 229 QYAWLRMMAG----------PDSHVMIVGDDDQSIYGWRGAKIENIEKFTLEFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR + Sbjct: 310 -------TEGAEGEPISVYSAYNELDE-------ARFAVNKVKEWQDKGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R + ++ Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMANR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R + T++E + A Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDQGCTMWEASIRLLDDKVLAGRAAGALSRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ ++ L H+ ++ + G + I+ L+E + T + E+ Sbjct: 462 VELVNALEDDTCEMPLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 PEEAEEMTLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 ++L I Sbjct: 608 EKLYITYAE 616 >gi|256824633|ref|YP_003148593.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547] gi|256688026|gb|ACV05828.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547] Length = 831 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 111/760 (14%), Positives = 209/760 (27%), Gaps = 144/760 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P VS + + T+ L+ + Sbjct: 132 AAAEMRERVEALVGPPARAMWVSTFHSACVRILRREAKTV-----GLRSTFSIYDAADSQ 186 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+S P++ ++ S E L Sbjct: 187 RLISLVLRELDLDPKRFPPGAVSHRISGAKNELLDAEAF-----------ANAVNENNPY 235 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + ++ LDF+DLI+ T ++L+ + + HIL+DE Q Sbjct: 236 DRAIAEVYTRYSQRLREANALDFDDLIMMTVNILQAFPA---VAEHYRRRFRHILVDEYQ 292 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPR---------TLFAVGDEKQSIYSFHGAEPKRV 237 DT+ Q+ ++R LT + L VGD QSIY+F GA + + Sbjct: 293 DTNHAQYVLVRELTGGAGSTGGVEPGQQPAEHQVPPAELCVVGDADQSIYAFRGATIRNI 352 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 + + + I L ++RST ILT + + E + + S Sbjct: 353 VEFETDYP--------EARTILLEQNYRSTQTILTAANTLIGRNERRRAKNLWSEA---- 400 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 + + + + A +A I ++ Sbjct: 401 ------------------------GDGDRIVGYVADNEHDE-------ASFVAERIDQLV 429 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 D+ V R + + + + + Sbjct: 430 DRGEAV---------PGDVAVFYRTNAQSRALEEVF----VRVGLPYRVVGGTRFYERRE 476 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYI 470 IKD +A R +++ D ++ +L P + + + E Sbjct: 477 IKDALAYLRVLVNPTDTVNLRRILNVPKRGIGDRAEGALVALAERERIPFVAALGRAEDA 536 Query: 471 QKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 A + Q + L +A+ D +L QQ + + Sbjct: 537 PGLATRSLKAVQSFASLLEALRTVAEAGGGVADVLEAVLEQTGYAQQLRDSDDPQDESRL 596 Query: 527 DVLDEFLNFTLRNEQ-------------NSYSSLQELISELEQ-YPPTIKRAHSANHNEV 572 + L E ++ ++ + L + ++ + V Sbjct: 597 ENLAELVSVAREFDEAAADPDSPTAGEVGGAAHLAAFLEQVSLVADTDAGADEDSEQGVV 656 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H+AKGLE PVVFL F H Sbjct: 657 TLMTLHSAKGLEFPVVFLTGLEDGTFPHMRSLNDP------------------------- 691 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 EE RL YVG+TRA ++L + + S S + + + Sbjct: 692 ---------DELEEERRLAYVGITRARERLHLSRASVRSAYGSPQYNPPSRFLGELPEHL 742 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 ++ + A ++ Sbjct: 743 LHWEREGAVGAHAPTSQPAVARLAGRIAPERTRTVVQLEA 782 >gi|221124374|ref|XP_002163232.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 815 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 101/586 (17%), Positives = 189/586 (32%), Gaps = 143/586 (24%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ ++ V+DF +L++ + +LL+ A IR + HILIDE QDT+ + Sbjct: 178 EIYQLYEDQCQREGVVDFGELMLRSFELLRDN---APIREHYQRRFRHILIDEFQDTNKL 234 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I+ + G + ++ AVGD+ QSIY+F GA + R R Sbjct: 235 QYAWIKMIAGVGQGGSDA--GAGSVLAVGDDDQSIYAFRGARVGNMTDFVREFAVR---- 288 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS ++IL + + S G + Sbjct: 289 ----QQIKLEQNYRSYSNILDSANALISHNSRRLGKNL---------------------- 322 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + D + + D A+ + + +I D + Sbjct: 323 -----RTDQGAGEPVRVYEAPSDFAE--------AQWMVDEMKQLIRDD----------V 359 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I VL R + +I + I + IK +A R + + Sbjct: 360 PRSEIAVLYRSNAQSRVIETGL----FNAGIPYRVYGGLRFFERAEIKHALAYLRLLENP 415 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF+ ++ P I ++ R ++++ + + + + Sbjct: 416 NDDTSFLRVVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDV 475 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN---------- 539 + + D L+L + + + R G + ++ LDE +N Sbjct: 476 MREQTADLNLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFVMQEGFGREA 535 Query: 540 ----------------------------------EQNSYSSLQELISELEQYPPTIKRAH 565 ++ +L L + L Sbjct: 536 PGMAPLVSSPEALLSQSPASQGLSGEALETAPDEFGDTGETLSPLQAFLTHAALEAGDNM 595 Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 +A + +++MTVH++KGLE VF+ +F H++ Sbjct: 596 AAAGQDAIQLMTVHSSKGLEFDCVFITGMEEGLFPHENS--------------------- 634 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL YV +TRA +L + Sbjct: 635 -------------MSDHDGLEEERRLAYVAITRARKRLYLSHSQTR 667 >gi|222111848|ref|YP_002554112.1| uvrd/rep helicase [Acidovorax ebreus TPSY] gi|221731292|gb|ACM34112.1| UvrD/REP helicase [Acidovorax ebreus TPSY] Length = 826 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 102/617 (16%), Positives = 200/617 (32%), Gaps = 142/617 (23%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K+ ++ + + A L YEE ++ V+DF +L++ + +LL Sbjct: 177 KQLAYFIAGCKEEGMRPRDVPAHDADTRKKVELYQLYEEQCQREGVVDFGELMLRSFELL 236 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + D +R + HIL+DE QDT+ +Q+ ++ + D G + ++ AVG Sbjct: 237 RDND---PVRAHYQRRFAHILVDEFQDTNKLQYAWLKQMAGDVVDGCLH--TQGSVLAVG 291 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + R + I+L ++RS ++IL + + S Sbjct: 292 DDDQSIYAFRGARVGNMQDFVREFDVQ--------HQIKLEQNYRSYSNILDSANALISH 343 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + +T G V+++ + + Sbjct: 344 NSRRLGKNLRTTQ---------GPGEPVRIY--------------------------EAN 368 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 S A+ + I ++ + K+I VL R + +I + Sbjct: 369 SDLAEAQWMVDEIKQLVRDGEMP---------RKEIAVLYRSNAQSRVIESAL----FNA 415 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 + + IK +A R + + DD SF+ ++ P + + Sbjct: 416 SVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFPPRGIGARTLEVLQDAA 475 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 R ++++ + + + + L Q + +L + + + Sbjct: 476 RSSGCSLHDAVSAVPGKAGTNLGAFVALVQVLREQTQGQNLRGIIGQVLESSGLLEHYRH 535 Query: 520 RF-GNEVIDVLDEFLNFTLRN--------------------------------------- 539 G + ++ LDE +N Sbjct: 536 EKEGADRLENLDELINAAESFVTQEGFGRDAVALPLDEHGNALTQSPASQGLDPDAPMLN 595 Query: 540 -----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + ++ +L L + L A + V++MTVH +KGLE VF+ Sbjct: 596 APGNVDADTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGM 655 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F H++ + EE RL+YV Sbjct: 656 EEGLFPHENS----------------------------------MSDRDGLEEERRLMYV 681 Query: 654 GMTRASDQLIICKHSNT 670 +TRA +L + Sbjct: 682 AITRARKRLYLSHSQTR 698 >gi|113460642|ref|YP_718708.1| DNA-dependent helicase II [Haemophilus somnus 129PT] gi|112822685|gb|ABI24774.1| ATP-dependent DNA helicase UvrD [Haemophilus somnus 129PT] Length = 726 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 108/550 (19%), Positives = 187/550 (34%), Gaps = 120/550 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++A + ++DF +L++ +L K I Q H+LIDE QDT+ IQ Sbjct: 177 IYKIYQDACDRAGLVDFAELLLRAYELWLKNPH---ILQYYQQRFQHVLIDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + I+ L S + VGD+ QSIY + GA+ + + R + K Sbjct: 234 YAWIKLLAG----------SQGNVMIVGDDDQSIYGWRGAQIENIHRFLKDFAK------ 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 II L ++RST +IL +++ S N G LW Sbjct: 278 --AKIIRLEQNYRSTGNILESANRLISNNSNRLGK---------------------DLW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + F+ L + A ++ + N + Sbjct: 314 ------TAGEKGEPVGIYAAFNELDE-------ALFVSGQVQNWLDNGGKVD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I KI + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAF----LRAKIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ------HVI 485 DD +F ++ +P E + + R T+++ Q + + I Sbjct: 407 DDAAFERVVNTPPRGIGERTLDILRNLTRERQVTLWQATQLAIQENLIPIRSVTVLLRFI 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--- 539 + I+ L ++ + G++ I+ L+E + T Sbjct: 467 ELINSLQQETAEMPLFVQTDFVIKHSGLYDMYKQEKGDKGEVRIENLEELVTATREFIKP 526 Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E S L ++ +++ V++MT+H+AKGLE P VF+V +F Sbjct: 527 DEAEDMSDLVAFLTHASLESGEE--QAASHQPCVQMMTLHSAKGLEFPRVFIVGMEEGLF 584 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 585 PS----------------------------------FRSGEDLARLEEERRLAYVGITRA 610 Query: 659 SDQLIICKHS 668 +L +C Sbjct: 611 KQKLTLCYAE 620 >gi|194100011|ref|YP_002003150.1| UvrD [Neisseria gonorrhoeae NCCP11945] gi|193935301|gb|ACF31125.1| UvrD [Neisseria gonorrhoeae NCCP11945] Length = 735 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|59802078|ref|YP_208790.1| hypothetical protein NGO1757 [Neisseria gonorrhoeae FA 1090] gi|240017454|ref|ZP_04723994.1| UvrD [Neisseria gonorrhoeae FA6140] gi|240118830|ref|ZP_04732892.1| UvrD [Neisseria gonorrhoeae PID1] gi|260439632|ref|ZP_05793448.1| UvrD [Neisseria gonorrhoeae DGI2] gi|268604542|ref|ZP_06138709.1| DNA helicase II [Neisseria gonorrhoeae PID1] gi|291042871|ref|ZP_06568612.1| DNA helicase II [Neisseria gonorrhoeae DGI2] gi|293398115|ref|ZP_06642320.1| DNA helicase II [Neisseria gonorrhoeae F62] gi|59718973|gb|AAW90378.1| putative DNA helicase II [Neisseria gonorrhoeae FA 1090] gi|268588673|gb|EEZ53349.1| DNA helicase II [Neisseria gonorrhoeae PID1] gi|291013305|gb|EFE05271.1| DNA helicase II [Neisseria gonorrhoeae DGI2] gi|291611378|gb|EFF40448.1| DNA helicase II [Neisseria gonorrhoeae F62] Length = 735 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|282849710|ref|ZP_06259094.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745] gi|282580647|gb|EFB86046.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745] Length = 1251 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 115/698 (16%), Positives = 218/698 (31%), Gaps = 62/698 (8%) Query: 28 VSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEERFSLLSSF------FLTQK--- 77 + + + ++ TG A + + + F+ + Sbjct: 237 RERLERMEQILLDPTGPHKWQNIYDNQLAALGMLSAAQTWDDMGEACKHMDTFIKDQFRM 296 Query: 78 FTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRDRFNTYK---MFKSTLASLTLA 130 + + + + L K+ LK Q + + + + + L Sbjct: 297 GSKEAQAYDPILVAEFKSLGGQNKDDLKAMQAAIFTVPEATLQEQFKAQYPIIEGLVELT 356 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEV 185 + Y + K++ ++DF DL LL + + + ++ I++DE Sbjct: 357 IAFHQAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSDVAKELQDTFKEIMVDEY 416 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q +I + S F VGD KQ+IYSF A+ + + Sbjct: 417 QDTNGVQETIINLI-----------SRVDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG 465 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR---- 301 I+L +FRS +IL + +F + T R Sbjct: 466 ----GNDAVERRIDLAKNFRSHENILAATNFLFYQIMTEDAAELNYTEAESLIPGRIVED 521 Query: 302 ---IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 G V+L VS+ + E D + I I + Sbjct: 522 APEDWVGGDVELQLLDVSKDTLGASESDE------DEGDDPENNERELDFIIQKIKEIHA 575 Query: 359 --TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 +G R I+ +D +L R I V N+R + Sbjct: 576 TKKQVQNPDGTFRQIEWRDFAILRRSLAGWGTRAV---EAMRQAGIPAVVNERDGYFEAQ 632 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 I+ L+AL I + E DL +L S L +++ + E Sbjct: 633 EIQLLLALLSIIDNPEQDLPMAAVLHSGLVGLDANELGALRLS-GEGSLWSLMPTYAEET 691 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535 + I ++ +++ D I ++ G + + Sbjct: 692 QDERLLAFIGHMERWRTLSRRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDR 751 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFL 590 E + + L + +E + + S N VR+MT+H +KGLE PVVFL Sbjct: 752 AKGYEASGFRGLFRFLRFVESLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFL 811 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + ++ I + + + + + + E R+ Sbjct: 812 SGVQKRFNMMDLRSELLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRI 871 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 LYV +TRA D+L + K T +++ ++ Sbjct: 872 LYVALTRARDKLFMTGFIKGFKNSKGVLSTIGELIKNA 909 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 67/224 (29%), Gaps = 14/224 (6%) Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + + + E + ++ E L PI L S + L+S Sbjct: 1021 DATRRTAKISVSELKRRFQERELEAGTIDTLNEPIATVEVSADDLANSVFG-RKPQALQS 1079 Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRL 831 G ++H+ +Q + + + + +E L + + Sbjct: 1080 EDDVLTGAQWGTLMHEAMQWLPLVTYTQASLTKELDALVAKGTFTEEERNLLSDMSLYKF 1139 Query: 832 LENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFE 882 + + + + E+ S +++ + G ID + + Sbjct: 1140 FSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEEDGEWVLVD 1199 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 YKT E + + Q+ +Y++ L+ + IY Sbjct: 1200 YKTDRVTSG--EELIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1240 >gi|297537598|ref|YP_003673367.1| UvrD/REP helicase [Methylotenera sp. 301] gi|297256945|gb|ADI28790.1| UvrD/REP helicase [Methylotenera sp. 301] Length = 732 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 94/585 (16%), Positives = 195/585 (33%), Gaps = 119/585 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K+ Q+ +D ++ T + + Y++ +++ V DF +L++ +LL Sbjct: 141 KQVQNFINGCKDEGLRAHAVEAYDPHSTKMREIFDEYDKQCQRDGVADFAELLLRCYELL 200 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 ++ IR +IL+DE QDT+ +Q+ ++ L + +FAVG Sbjct: 201 ERD---TNIRGHYQSRFKYILVDEFQDTNRLQYLWLKLLAGED----------NCMFAVG 247 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + ++ + + ++++L ++RS ++IL + + S Sbjct: 248 DDDQSIYGFRGARVGNMRDFEKDFKVQ--------NVVKLEENYRSHSNILDAANAIISH 299 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 N G + LW S + ++ + Sbjct: 300 NNNRLGKN---------------------LW-------TSAGAGEPVRVYDAYNDTDE-- 329 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I I + T +I +L R + ++ + Sbjct: 330 -----AQFIVDEIKMLHCEGTSL----------GEIALLYRSNAQSRILEQAL----FNA 370 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-Q 459 + + IK +A R I + DD + + ++ P + ++ Sbjct: 371 NLPYRVYGGLRFFERAEIKHALAYMRLIANANDDTALLRVINFPTRGIGARSLEQLQEVA 430 Query: 460 RHETETVYEYIQKFANCGI---SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 R E ++++ G + + I +++ A S + L + Sbjct: 431 RAENCSIWQAAINKVGNGKLGAKGIEGFVALIRQMVDNAYGISLRELTELAITMSGLVAH 490 Query: 517 FISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE---------LISELEQYPPTI-KRAH 565 + + G + I+ L E + + + + L L + Sbjct: 491 YENDKEGEDRIENLKELVTAAVSFTNRDFGNHNNVDGETEQDLLTQFLSHASLEAGEHQA 550 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 +++MTVH +KGLE VF+ + H+ Sbjct: 551 DVGREALQLMTVHASKGLEFKAVFISGLEEGLCPHEQSL--------------------- 589 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + + EE RL+YV +TRA +L + + Sbjct: 590 -------------FENAGLEEERRLMYVAVTRARQRLYLSHAQSR 621 >gi|307824211|ref|ZP_07654437.1| UvrD/REP helicase [Methylobacter tundripaludum SV96] gi|307734591|gb|EFO05442.1| UvrD/REP helicase [Methylobacter tundripaludum SV96] Length = 725 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 117/729 (16%), Positives = 235/729 (32%), Gaps = 137/729 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + VS + + + + L S Sbjct: 30 GAGSGKTRVLVHRIAWQIQVLGVSAHSILAVTFTNKAAKEMRGRIEELLNMSAQSMWIGT 89 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI- 110 F + L F Q +I + + + D + + +I Sbjct: 90 FHGVAHRLLRRHAKQAKLPETFQVMDSGDQLRLIKRLLATLNLDADKWPPRQVQWYINAQ 149 Query: 111 -RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + M ++ + YE+ ++ ++DF +L++ ++LL+ + Sbjct: 150 KDEGIRARHMMETGDPYQRQMLIIYKAYEQLCDRSGLVDFAELLLRAHELLRDNPD---V 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 Q + +DE QDT+ IQ+ +R LTE +F VGD+ QSIY + Sbjct: 207 LDFYQQRFRQVHVDEFQDTNTIQYAWLRLLTE----------GKDNIFVVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + ++ +I+L ++RST +IL +KV S+ + G Sbjct: 257 RGAKIENIYSFQKHYPNH--------QVIKLEQNYRSTGNILKAANKVISVNDGRMGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + S + F+ + A + Sbjct: 307 -------------------ELW-------TDAGDGDLISLYAAFNEQDE-------AHFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + + KD+ +L R + Sbjct: 334 VERIRAWVNEGGL----------RKDVAILYRSNAQSRQFEERLMTT----GTPYRVYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + + IK+ +A R + +++DD SF ++ +P I I R ++ +++ Sbjct: 380 LRFFERVEIKNALAYLRLMSNRDDDASFERVINTPTRGIGAKTIDDIRNIARDQSLSLWA 439 Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519 + + + ++ I A+ + L++ Q+ + Sbjct: 440 AAIVLINQRTLSARATNALIGFLELIKRFDGQAEGLELFEKVKLVVEKSGLIELYQKDKA 499 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ------ELISELEQYPPTIKR-AHSANHNEV 572 G E ++ L+E +N + ++ L+ EL L + V Sbjct: 500 DKGEEKVENLEELVNAARLFDASTIGDLEDQENLGELDMFLANATLESGELQGDDFDDCV 559 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 ++MT+H+AKGLE VFLV +F + Sbjct: 560 QLMTLHSAKGLEFKQVFLVGMEEGLFPSQQSVDDVG------------------------ 595 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 EE RL YVG+TRA QL + + + + + Sbjct: 596 ----------RLEEERRLCYVGITRAMKQLYLTYAESRRLYGRETYPRPSRFLREIPSEH 645 Query: 693 ERVKKIKLT 701 + +++ T Sbjct: 646 IQEVRMRAT 654 >gi|271500543|ref|YP_003333568.1| exodeoxyribonuclease V subunit beta [Dickeya dadantii Ech586] gi|270344098|gb|ACZ76863.1| exodeoxyribonuclease V, beta subunit [Dickeya dadantii Ech586] Length = 1230 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 136/1048 (12%), Positives = 285/1048 (27%), Gaps = 169/1048 (16%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + K W ++ D+ + + + + ++ Sbjct: 235 AEKTRQLAALKAPWTQWCDELRDLLNAAVAAKKADGRKLQAR--------YFDPWLDKLQ 286 Query: 68 LLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 +S T T + Q + + E ++ + + + Sbjct: 287 HWASSDETTLDIGTGWTRLTPQGLRECWKIPDEAPSHPALRAMETLAQQLSDLPEPRSQL 346 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 ++++ + ++ + F+DL+ + L+ D + +I ++ +IDE Sbjct: 347 LRHACRWIHQRFRSEQESRAQMGFQDLLTRLDGALRG-DNGERLAQRIRRQFPVAMIDEF 405 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT +Q+ + +L + + L +GD KQ+IY+F GA+ LR +R Sbjct: 406 QDTDPLQYRIFDTLYRVAT-----NDPQQGLILIGDPKQAIYAFRGADIYTYLRARRD-- 458 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG-------LSEDSTTTIRHR 298 L +FRST ++ V++VF EN D + Sbjct: 459 -------TDGRHYTLGTNFRSTQAMVDAVNQVFMQAENRANGAGAFLFRQPDGDNPVPFL 511 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMI 357 + G +W + WT D L +A A + ++ Sbjct: 512 PVQAN--GRDDIW-----VQEGTPAAALTCWTLETDEPLSSSEYRQRMAAGCAREMVRLL 564 Query: 358 G------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 + S+ + R ++ D+ VLV ++ + SV +DR Sbjct: 565 QLGEQGQAGFVSSDQRWRPVKPGDMAVLVNTGREAMAVRAQLSA---RGVRSVYLSDRES 621 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 + D +L E+D L +PL S + ++ E Sbjct: 622 VFDSPLAGELHCWLSACADPENDRLLRAALATPLLGLSWQALDRLNHDEQE--------- 672 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---V 528 + ++Y +L ++ ++ + Sbjct: 673 -----WERRVMQFVRYQQCWRQQ----GVLPMLRRLLWEFDVPRRLLAADNARALTDVLH 723 Query: 529 LDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 L E L L E L E ++K ++ + V+++TVH +KGLE Sbjct: 724 LSELLQQASVHLDGEHALIRYLAEQCQADNPGSDSLKVRLESDADLVKVVTVHKSKGLEY 783 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P+VFL + + I + + Sbjct: 784 PLVFLPFACAFRTVSHRDVPLKFHDDDGQPRLELI----------ASDEAVARADHERLG 833 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---------------------WYDM 684 E R YV +TRA L + EK + + Sbjct: 834 EDLRKFYVALTRARYALWLGVAPLKELEKSAPGYLLGAGEPVEAGQLASCLSLWIGPHSQ 893 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + +D+ V + E + H T + + +++ Sbjct: 894 IAPLPESDDAVYRAARETPALGQEPPLPDIRRHRWRITSYSGLQLAPEGQYQERRESAAH 953 Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLE---SLLSDNQTFNRGLIIHKLLQVIFTLP---- 797 + + + L + S + G +H LL+ Sbjct: 954 DAAEVQSARQETFSEPQETAERLPPLPVGYDMYSFPRGAVPGSFLHGLLEWAGKEGFAAL 1013 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----------MTTAMSCDSY 846 R + + L + L P+ + Sbjct: 1014 AADRPRVEDQVARRCNRQGWTPWIPMLTDWLMAQLNQPLALPASPAGTVSLAGLTQYQVE 1073 Query: 847 SEVSVS-----------------------GKINCPKKDIIISGRIDQISISQQNIFIFEY 883 E + + + ++ G ID + Q ++ +Y Sbjct: 1074 MEFWFALNQVDTQRLDQQVSAATLAGAPRVPLMRDALNGMLKGFIDLVFEHQGRYYVLDY 1133 Query: 884 KTHHHVPQEIE---------HIPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI- 925 K++ + + + + QL++Y L ++ + L Sbjct: 1134 KSNWLGADAADYDLAHMARAMLDHRYDLQLALYLFALHRLLRSRLPDYDYDRHVGGALYL 1193 Query: 926 YVS------EPKVFIIPQNKLNKAFAEI 947 ++ P L A + Sbjct: 1194 FLRGSQAPGGGVYAERPDRTLIDALDRL 1221 >gi|237736785|ref|ZP_04567266.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC 9817] gi|229420647|gb|EEO35694.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC 9817] Length = 726 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 108/609 (17%), Positives = 212/609 (34%), Gaps = 122/609 (20%) Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT---LAK 131 T I +++ K LKE L K+++ + +++T + Sbjct: 113 TDDQKRVAKNIMKDLVVKDKSLKEGL--VASIISKLKEDGISPDEYETTEKYNDNGKIVA 170 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y K N +DF D+++NT+ LL D + K+ ++ +I++DE QDT+ I Sbjct: 171 EVYRRYNSVLKNNNAMDFSDILVNTDRLLDIPD----VLDKVQEKFRYIMVDEYQDTNNI 226 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q++++ + + + + VGDE QSIY F GA + +L ++ Sbjct: 227 QYKIVNKIAKKY----------GNICVVGDENQSIYGFRGANIQNILDFEKDYPN----- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++++L ++RST+ IL + V +A+ LW Sbjct: 272 ---ATVVKLEENYRSTSVILDAANSVIRNNSSARDKK---------------------LW 307 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ + +D + A + I GK + Sbjct: 308 -------TKKTVGEKITVEGCYDGREE-------AGFVVGEI----------IKGKAKGA 343 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + KD +L R + + I IKD++A I + Sbjct: 344 KYKDFTILYRTNAQSRMFEEKL----LRENIPYKIFGGMQFYQRAEIKDIVAYLAVINNT 399 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 D+L+ +L P + + KI + + +++ + + + Sbjct: 400 TDNLNLARILNVPKRKIGDKTVEKIEDFAKEQNLSLFSALGRANEIAGLSANLKITLLDF 459 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQ- 541 + E I +++ + + F I+ K I+ + ++E N + E+ Sbjct: 460 YNMMREFIELSEGINVSELFDTIVREIKYSDYLIANYEDYEARKENIEELKNSIVELEKV 519 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +L+E + + T + V++MT+H +KGLE P VF+V +F Sbjct: 520 VENLTLREYLENISLVSATDNLEDE--KDYVKLMTIHNSKGLEFPTVFVVGVEEGLFPGS 577 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA D+ Sbjct: 578 ----------------------------------RADFDSNELEEERRLCYVAITRAEDK 603 Query: 662 LIICKHSNT 670 L + + Sbjct: 604 LYMTYAKSR 612 >gi|320009010|gb|ADW03860.1| ATP-dependent DNA helicase PcrA [Streptomyces flavogriseus ATCC 33331] Length = 812 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 116/709 (16%), Positives = 221/709 (31%), Gaps = 134/709 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P + + + + + + Sbjct: 126 AAGEMKERVEDLVGPRANAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 180 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + K +LK +L + F+ T Sbjct: 181 RLMALVCRDLDLDP-KRYPPKSFTAKVSNLKNEL------IDEETFAGQAADGFEKT--- 230 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+D+I+ T LL+ + + H+++DE Q Sbjct: 231 ---LAQAYALYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVMVDEYQ 284 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L +P L VGD QSIY+F GA + +L+ + Sbjct: 285 DTNHAQYTLVRELVG----PAGEADAPGELCVVGDADQSIYAFRGATIRNILQFEEDYP- 339 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + I L ++RST IL+ + V E+ + + Sbjct: 340 -------DATTIMLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 374 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ + + + + A+ +A I + Sbjct: 375 ---LW------TNAGTGTRITGYVADTEHDE--------AQFVADEIDRLTDAG------ 411 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ V R + + + + + ++D++A R Sbjct: 412 ---DAKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 464 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482 + + ED + +L P + I E + + +++ + Sbjct: 465 VLSNPEDTVPLRRILNVPKRGIGDRAEAMIDALSMREKISFPQALRRVDEAYGMAARSAN 524 Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + EL I + + P ++ + + + I+ L E + Sbjct: 525 AVKRFNTLMEELRTIVESGAGPAVVVEAVMERTGYLAELQASTDPQDETRIENLQELASV 584 Query: 536 TL-----RNEQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 L R E+ +L E + + L I V +MT+HTAKGLE PVV Sbjct: 585 ALEFEQERAEEEGAGTLAEFLEKVALVADADQIPDEDEDGSGVVTLMTLHTAKGLEFPVV 644 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FL VF H + EE Sbjct: 645 FLTGMEDGVFPHMRALG----------------------------------QVKELEEER 670 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 RL YVG+TRA ++L + + + S + + + + K+ Sbjct: 671 RLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPDQHLEWKR 719 >gi|301299732|ref|ZP_07205982.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852663|gb|EFK80297.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 744 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 119/807 (14%), Positives = 243/807 (30%), Gaps = 133/807 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 30 GAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERVNNLMGEGAEDIWVST 89 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + ++ +++ +K+ L + K R + + Sbjct: 90 FHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQVLNDLNIDTKKYDPRAILSVISNA 149 Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 L + Y+ N +DF+DLI+ T L + + Sbjct: 150 KNDLLDPKDYAQQANGPFEEIVSKAYFEYQNQLANNQAMDFDDLIMQTIRLFNESPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 ++ ++I +DE QDT+ Q+E++ L + R L VGD QSIY Sbjct: 208 -LEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKY----------RNLCVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + ++ + ++I+L ++RST +IL + V N + + Sbjct: 257 WRGANMENIMNFEEDYP--------DATVIKLEQNYRSTKNILAAANNVIENNVNRKDKT 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 309 ---------------------LW-------TDNKQGDKIHYYRANNANEE-------AYY 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I I + D +L R + +I I Sbjct: 334 VVKKIQEQIRNNGR---------HYGDFAILYRTNAQSRIIEETF----VKTNIPYKLVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I D +A R + + D +SF ++ P + + K+ + ++ Sbjct: 381 AHKFYDRKEIMDTLAYLRLVTNPADSMSFERIVNEPKRSIGSVTVGKLRTFSQIHGMSML 440 Query: 468 EYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + A ++ + + I +L + + + IL + Sbjct: 441 EASKSAALAGVSAKASNELEKFAEMIEQLHEYQKAYNVTEVTERILDVTGYKANLQREDT 500 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVRIM 575 E ++ L+EFL T + +Q+ +E + L + +EV +M Sbjct: 501 LENRNRLENLEEFLTVTKQFDQDWEPEDEESDPFVDFLADLALVSDQDSVEEEPDEVTLM 560 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVVFL+ +F Sbjct: 561 TLHAAKGLEFPVVFLMGLEEGIFPLS---------------------------------- 586 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + ++ EE RL YVG+TRA ++L + + KS + + + Sbjct: 587 RAVMDENELEEERRLAYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEELIQS 646 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + ++ + + T+++ + + K Sbjct: 647 DNQTVASTTLTSKRTRSREVPFSKKPKYRMPAGTVERPKETGADKQSWNIGDKISHKAWG 706 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR 782 + G+ + + + R Sbjct: 707 TGTIVKVSGDGEDTELDIAFEGKGIKR 733 >gi|314963433|gb|EFT07533.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA1] Length = 810 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 191/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRCRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|300173630|ref|YP_003772796.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG 18811] gi|299888009|emb|CBL91977.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG 18811] Length = 747 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 83/501 (16%), Positives = 165/501 (32%), Gaps = 84/501 (16%) Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 ++ A + Y+ K++ +DF+DLI+ T DL + + + ++ Sbjct: 161 AKQADNAFQETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQSSPE---VLERYQKQFE 217 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 ++ +DE QDT+ Q+ ++ L + + L VGD QSIY + GA +L Sbjct: 218 YLHVDEYQDTNDAQYTIVNLLAK----------RSQNLAVVGDADQSIYGWRGANMNNIL 267 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 ++ + L ++RST +IL + V + Sbjct: 268 NFEKDYPT--------AHTVMLEQNYRSTQNILDAANAVINHNNERVPK----------- 308 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 +LW + ++ + A I I M Sbjct: 309 ----------ELW-------TQNGKGDKITYYRAQTEHDE-------ANFILSNILKMRS 344 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 + D VL R + + + + I Sbjct: 345 ESKMA---------YSDFAVLYRTNAQSRNVEESL----VKANMPYTMVGGHKFYERKEI 391 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQ 471 D+M+ I + +++ +F ++ P + ++ + Y E Sbjct: 392 LDIMSYMNLITNPDNNAAFERVVNEPKRGIGATSLIRLRELANRLNVSYMTAIDSIELAP 451 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDV 528 + + +KF + +HEL ++F + + + + RQ + + ++ Sbjct: 452 EISTRAATKFLTFAEMMHELRQQSEFLNVTELAEMAMTKSGYRQMLAEKNDPDSQARLEN 511 Query: 529 LDEFLNFTLRNE----QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 L+EFL+ T + ++ + L + V +MT+H AKGL Sbjct: 512 LEEFLSVTTEFDGKYNSEDPEAVDPMTDFLGSTALMSDLDDFEEGDGSVTLMTLHAAKGL 571 Query: 584 ESPVVFLVDTGSQVFSHKHIK 604 E PVVFL+ +F Sbjct: 572 EFPVVFLIGMEEGIFPLSRSL 592 >gi|294142649|ref|YP_003558627.1| DNA helicase II [Shewanella violacea DSS12] gi|293329118|dbj|BAJ03849.1| DNA helicase II [Shewanella violacea DSS12] Length = 721 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 99/579 (17%), Positives = 192/579 (33%), Gaps = 116/579 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+E+ + ++DF ++++ ++L + +IL+DE QDT+ I Sbjct: 172 QIYQVYQESCDRAGLVDFAEILLRAHELWLNNPH---VLKHYQDRFKNILVDEFQDTNAI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L S+ + VGD+ QSIY + GA+ + + + + Sbjct: 229 QYAWIRVLA----------SAGANVMIVGDDDQSIYGWRGAQVENLHKFLVDFPQ----- 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 S I L ++RST IL +++ + + G LW Sbjct: 274 ---ASTIRLEQNYRSTGHILKASNELIANNPDRLGKK---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + S F+ + + AR I IS+ Sbjct: 310 -------TQDKDGEPISVYCAFNEMDE-------ARFIVGRISDWHDMGGDL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +L R + ++ ++ + IKD M+ R I ++ Sbjct: 348 --SGCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMSYLRLINNK 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 +DD +F ++ +P + + R + T+++ + + + + Sbjct: 402 DDDAAFERVVNTPARGIGGRTLDILRATARQQKLTLWQTCLRAIEEKLLSGRAANAVRGF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-E 540 + I E+ Q + H I+ + + + G + + LDE + Sbjct: 462 MDLIVEMQQDTQEMTLHRTTDHIIAKSGLKAMYEAEKGEKARSRVENLDELVTAARTFIM 521 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + EL + L + A + V++MT+H+AKGLE PVVF+ +F Sbjct: 522 PEDIEDIGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPVVFMSGVEEGIFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + +E RL YVGMTRA Sbjct: 582 SQMAMDEG----------------------------------DRLDEERRLCYVGMTRAM 607 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 ++L I + N + + ++ Sbjct: 608 EKLYITYAETRRIYGRENFARPSRFIKEIPTEHVEEIRL 646 >gi|225852895|ref|YP_002733128.1| ATP-dependent DNA helicase PcrA [Brucella melitensis ATCC 23457] gi|256045044|ref|ZP_05447945.1| DNA helicase II [Brucella melitensis bv. 1 str. Rev.1] gi|256263623|ref|ZP_05466155.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|260565357|ref|ZP_05835841.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|265991470|ref|ZP_06104027.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1] gi|225641260|gb|ACO01174.1| ATP-dependent DNA helicase pcrA [Brucella melitensis ATCC 23457] gi|260151425|gb|EEW86519.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|263002254|gb|EEZ14829.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1] gi|263093675|gb|EEZ17680.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|326409437|gb|ADZ66502.1| ATP-dependent DNA helicase PcrA [Brucella melitensis M28] gi|326539143|gb|ADZ87358.1| ATP-dependent DNA helicase pcrA [Brucella melitensis M5-90] Length = 858 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|224024112|ref|ZP_03642478.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM 18228] gi|224017334|gb|EEF75346.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM 18228] Length = 793 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 97/625 (15%), Positives = 186/625 (29%), Gaps = 127/625 (20%) Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDLII 154 Q + ++ + ++ + + Y E +++ +DF+DL++ Sbjct: 140 VQSRISQAKNHLILPDAYAASGELYRADADAKMPQLRDIYLRYWERCRQSDAMDFDDLLV 199 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 T L K I K ++L+DE QDT+ Q +++ LT R Sbjct: 200 YTYQLFKSHPE---ICDKYATHFEYVLVDEYQDTNYAQHCIVQLLTG----------KHR 246 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + VGD+ QSIYSF GA +L + + + + +L ++RST I+ Sbjct: 247 RVCVVGDDAQSIYSFRGANIDNILNFTNLYR--------EARLFKLEQNYRSTQTIVKAA 298 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + + + S + + + +Y D Sbjct: 299 NSLIAKNREQIRKEVFS---------------------------EKETGEPITVFCAYSD 331 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 A + I + + D +L R + + R Sbjct: 332 LEE--------AEIVGNRIMQLHSREH---------YGYSDCAILYRTNAQSRVFEETLR 374 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 I IKD++A R ++ D+ +F +L P + + Sbjct: 375 ----KKNIPYRIYGGLSFYQRKEIKDIIAYFRLAVNPNDEEAFKRVLNYPARGIGDTTLN 430 Query: 455 KI-CTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 K+ +++ Y +K Q I + + + Sbjct: 431 KLVDAANRHKVSLWTVVNEPLAYGVDINKGAHTKLQGFRALIAGFVEAVPQKNAFELGKE 490 Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPT 560 I+ ++ E + ++E +N Q ++ L L + Sbjct: 491 IVFQSGIGREITQDRSPENLSRQENVEELMNGIHDFCATRQEEGNTHWLLSDYLSEVSLL 550 Query: 561 IKRAHSANHN--EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + + + +V +MT+H+AKGLE VF+V +F Sbjct: 551 TDQDSDRDADLPKVTLMTIHSAKGLEFRNVFVVGLEENLFPG------------------ 592 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 EE RL YV +TRA D + KS Sbjct: 593 ----------------ASAASSYKELEEERRLFYVALTRAEDYCFLSYAKTRFKYGKSEF 636 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNS 703 T + D + + ++ Sbjct: 637 CTPSRFLKDIDSRYLNMPQEEMLAR 661 >gi|212219550|ref|YP_002306337.1| DNA-dependent helicase II [Coxiella burnetii CbuK_Q154] gi|212013812|gb|ACJ21192.1| DNA helicase II [Coxiella burnetii CbuK_Q154] Length = 723 Score = 283 bits (723), Expect = 1e-73, Method: Composition-based stats. Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YE+ +++ ++DF L+ SA +R Q HIL+DE QDT+ IQ Sbjct: 177 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +++L + V AVGD+ QSIYS+ GA+ + + R Sbjct: 234 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST IL + V +N G LW Sbjct: 276 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + F+ + A + I + Sbjct: 314 ------TDSRTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 350 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D+ +L R + L D +I + IKD +A R + ++ Sbjct: 351 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ P + + T R ++++ Q ++ QH I Sbjct: 407 DDAAFERVVNVPTRGIGNTTLVALRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542 + + L + + +L + G ++ L+E +N T + Sbjct: 467 ELVDRLQDETKNLPLAEQTEKMLMGSGLLALYKKDNSEKGLSRVENLEELINATSQFTPT 526 Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +L L + L ++ H + V +MT+H AKGLE P+V + +F H+ Sbjct: 527 DDLALSPLDAFLSHVALETGEEQASAHSDCVSLMTLHAAKGLEFPLVIISGLEEDLFPHR 586 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YVGMTRA ++ Sbjct: 587 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 612 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 LI+ + + + + Sbjct: 613 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 651 >gi|312171298|emb|CBX79557.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Erwinia amylovora ATCC BAA-2158] Length = 1134 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 137/968 (14%), Positives = 306/968 (31%), Gaps = 143/968 (14%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + K W I+ + + + + +Q + + Sbjct: 184 ARISTLKQAWLAAGDLQQVIDASGVDRRSYNSKHLPNWLEKISLWAQAETQDYEVPKDLE 243 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 F + + T++ L +++ E + +RD + + + Sbjct: 244 RFGQRLLLEK----TKKGEPPRHPLFDRIDAFLAEPLSLRDLVIARALQQ-----VRFVT 294 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 ++ K+ + L F+DL+ + L++ + I Q LIDE QDT Sbjct: 295 ------QQQKRLHAQLGFDDLLGRFDAALQQPG-GEALASAIRQRYPVALIDEFQDTDPQ 347 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + R+L L +GD KQ+IY+F GA+ ++ + T Sbjct: 348 QYRIFRTLYR--------RQPDSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT-- 397 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 L ++RS+ ++ V+++FS +N SE + + G +VQ Sbjct: 398 --------LETNWRSSPAMVNAVNQLFSGQQNPFLFSEIPFINVNPAAPNHGLNFSVQ-- 447 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-----NG 366 + P + W D + +AR+ A I + +G Sbjct: 448 --------GKVQPALQFWLQPGDGVGVSDYQQFMARQCAAEICRWLSAGQKGEALMGKSG 499 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++R +QA DI VLVR R + +I L SV ++R + ++++ L + Sbjct: 500 QQRAVQASDITVLVRSRSEAAVIREALNAL---AIPSVYLSNRDSVFTTPEAREMLWLLQ 556 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486 +L+ E + L + LF + + + + + + + + V+ Sbjct: 557 AVLAPEQERILRSALATSLFGTDALALDALSQDERAWDALVDEFVDYRQRWLQ--RGVLP 614 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543 + EL+ +L + G ++ L E L L +E Sbjct: 615 MLRELMMKR------QIAENLLASGNGERRLTDLL------HLGELLQEASATLDSEHAL 662 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L + I + + + + ++ + V+I+T+H +KGL+ P+V+L + Sbjct: 663 VRWLAQQIEQPDGQSASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN-------- 714 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ + + I+ ++ E RLLYV +TR+ Sbjct: 715 -----FREADNGVYHDRQTFTALLDLQQSEESIELAEQERLAEDLRLLYVALTRSIFHCS 769 Query: 664 ICKHS--NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + +K+ N + E L ++ A + Sbjct: 770 VGIAPLIKGTRKKEGNSDLHRSALGYLVQQGEPADATGLLAALQVLNSDATALIMAAEAD 829 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN----------------DINEPYILNPSTIDTK 765 P + + + + + + + ++ + + Sbjct: 830 APPWQTQQEEVGILSSRTLPRSLRDNWRVTSYSGLQQHGHSIVMEWLPRLDVDAAGEASI 889 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + + + + G +H L + + + +A+ + + Sbjct: 890 ERVPQLTPHTFPRGAGPGTFLHGLFETLEFSAPLDEEWLAQQL---SAQALGEEWQPVMR 946 Query: 826 LSITRLLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS---------- 865 I R+L+ P+ + + +E + +S + D ++ Sbjct: 947 DWIERILQTPLNETGVSLYQLPAPARKAELQFYLPISRLLTSEALDRVVRQDPLSQPCPP 1006 Query: 866 -----------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905 G ID + Q ++ +YK++ + + Q Sbjct: 1007 LDFHQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQEAMAQAMQAHRYDLQYQ 1066 Query: 906 IYEKILKD 913 +Y L Sbjct: 1067 LYTLALHR 1074 >gi|225620088|ref|YP_002721345.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1] gi|225214907|gb|ACN83641.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1] Length = 665 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 96/602 (15%), Positives = 193/602 (32%), Gaps = 124/602 (20%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + +AK + Y+ K +DF DLI T DL + K + +I Sbjct: 154 EPHDDLEKIAKRVYEVYQSYLKGYNAVDFNDLINLTIDL---YVEFPEVLNKYQERFRYI 210 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QDT+ Q+++ L + R + VGD+ QSIY+F GA+ +L Sbjct: 211 MVDEYQDTNFAQYKLTTLLASKY----------RNIAVVGDDDQSIYAFRGADVSNILSF 260 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 + I+ L ++RST IL V S + + Sbjct: 261 ENEYP--------DAKIVTLTKNYRSTKAILEAAHSVISNNTQRKDKKVVAE-------- 304 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 G + ++ D + A+ +A +I Sbjct: 305 -----GEEGIPPTIMPCEDERE----------------------EAQFVADSI------- 330 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + + + +D VL R + L R + F + IKD Sbjct: 331 --INYSISKRLNYEDFAVLFRMNAQSRLFEEAFR----LRGLPYTVVGAFQFYERKEIKD 384 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKF 473 ++A ++ ED++S + ++ P I + + YE + Sbjct: 385 ILAYLNLFVNPEDEVSLLRVINIPKRGIGAVAINNLNEASIKNGVSLYETLLNYESMDDI 444 Query: 474 ANCGISKFQHVIKYIHELIHI-------AQFCSPHDFFTLILGAKKGRQQFIS-----RF 521 + + + ++ I ++ + ++ L + ++ Sbjct: 445 SPKAKAGIKDFLEVIDHYHNLFTVDKNALERPKLYENINKFLDVIAYHNEILNSSDTKEQ 504 Query: 522 GNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 G + ++ ++ +N L E+++ ++L+ + + + + +M++H A Sbjct: 505 GAKKMENVESLMNGILEYEKSNKNATLKNYLDRILLMSIEEQNDDEDKKKGIMLMSIHAA 564 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P V++ + H+ Sbjct: 565 KGLEFPYVYICGMEDGIMPHQKSLD----------------------------------- 589 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 ++ EE RL YV MTRA L + + + K + T + + N + Sbjct: 590 ENGLEEERRLCYVAMTRAKKHLTLTYCRSRTKMGKKVECTPSVFLEEMSANLPEEMAMNE 649 Query: 701 TN 702 Sbjct: 650 EE 651 >gi|241763721|ref|ZP_04761769.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] gi|241367026|gb|EER61411.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] Length = 821 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 103/592 (17%), Positives = 190/592 (32%), Gaps = 148/592 (25%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YEE ++ V+DF +L++ + +LL+ D IR + HIL+DE QDT+ + Sbjct: 193 EIYQLYEEQCQREGVVDFGELMLRSYELLRDND---PIREHYQRRFQHILVDEFQDTNKL 249 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ L + + + ++ AVGD+ QSIY+F GA + R + Sbjct: 250 QYAWLKQLAGNDV--GGRYEARGSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVQ---- 303 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS ++IL + + S G + +T G+ V Sbjct: 304 ----RQIKLEQNYRSYSNILDSANALISHNSRRLGKNLRTTQG-------AGEPVRV--- 349 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + SS A+ + I ++ D Sbjct: 350 -------------------------YEASSDLAEAQWMLDEIKQLVRND---------GF 375 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + K+I VL R + +I + + + IK +A R + + Sbjct: 376 ERKEIAVLYRSNAQSRVIESAL----FNASVPYRVYGGLRFFERAEIKHALAYLRLLENP 431 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF ++ P I + R ++++ + + + + Sbjct: 432 HDDTSFTRVVNFPPRGIGARSIEVLQDAARAAGCSLHDAVSAVPGKAGANLGAFVAMVDV 491 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539 L Q + +L + + F + G + I+ L E +N Sbjct: 492 LREQTQGLNLRGIIEQMLESTGLVEHFRTEKEGADRIENLQELVNAAESFVTQEGFGRDA 551 Query: 540 ----------------------------------------EQNSYSSLQELISELEQYPP 559 + ++ +L L + L Sbjct: 552 VALPLDEHGTPLTQSAVSQGIDPHAPLLDEPLKPAVPGIVDADTGETLSPLAAFLTHAAL 611 Query: 560 TI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 A + V++MTVH +KGLE VF+ +F H + Sbjct: 612 EAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGMEEGLFPHDNSSS------------- 658 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + EE RL+YV +TRA +L + Sbjct: 659 ---------------------DRDGLEEERRLMYVAITRARKRLYLSHSQTR 689 >gi|326334139|ref|ZP_08200365.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1] gi|325948064|gb|EGD40178.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1] Length = 819 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 115/731 (15%), Positives = 227/731 (31%), Gaps = 144/731 (19%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQ 76 + P ++ NK + + + K+A+ + ++ + L Sbjct: 83 RGAHPGSILAITFTNKAAAEMKQRVEALVGKRARIMWVSTFHSACVRILRKEIDKVGLKS 142 Query: 77 KFTPQKNIITQ----------EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 F+ + +++ + + L D+ ++RD K ++ Sbjct: 143 NFSIYDAQDQKRLMQLVLSDLDLDPRHYQPGQVLNWVSDQKNELRDVEAAEKDARN--HL 200 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y++ ++ LDF+DLI++T +L + +R + H+L+DE Q Sbjct: 201 EQTYVAAYKEYQKRLRQANALDFDDLIMSTVELFR---AYPEVREVYRRRFRHVLVDEYQ 257 Query: 187 DTSLIQWEVIRSLTED---------FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 DT+ Q+ ++ L D + + S P L VGD QSIY+F GA + + Sbjct: 258 DTNHAQYALVHELCADRMDDTALTDSYADEAPRSEPAELMVVGDADQSIYAFRGANIRNI 317 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 L ++ + I L ++RST ILT + V + + + S Sbjct: 318 LDFEQDFP--------DATTILLEQNYRSTQTILTAANAVIKHNKGRKEKALWS------ 363 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 N ++ D + AR ++ I ++ Sbjct: 364 ----------------------DAGNGERIVGYVADDERDE-------ARFVSDEIDKLV 394 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 ++A DI V R + + + + Sbjct: 395 DGG----------LKAADIAVFYRTNAQSRVFEEVF----IRTGQPYKVVGGVRFYERKE 440 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANC 476 ++D +A R + + +D +S +L +P + + + + T +E +QK + Sbjct: 441 VRDALAYLRTLANPDDQVSLRRILNTPKRGIGDRAVACVNALAERDGLTFWEALQKAEDA 500 Query: 477 GISKFQH------VIKYIHELIHIAQFCSPHDFF-TLILGAKKGRQQFISRFGNE---VI 526 + + + EL+ + D +L + + Sbjct: 501 PGMATRSLTNIKVFVAMVEELLQMVDAGERADVILETVLDRSGYLASLEESDDPQDETRV 560 Query: 527 DVLDEFLNFTLRNEQNS----------------YSSLQELISELEQYPPTIKRAHSANHN 570 + L E + + L + + + T + + Sbjct: 561 ENLAELVAVAREFSDDPVAAPSADPADVDAGTVEPGLADFLERVALVADTDQIPDDEDG- 619 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V +MT+HTAKGLE P VFL VF H Sbjct: 620 VVTLMTLHTAKGLEFPAVFLTGMEDGVFPHSRALGDGT---------------------- 657 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA +L I + S + + + Sbjct: 658 ------------ELEEERRLAYVGITRAEKRLFISRAVVRSAWGAPSHNPGSRFLDELPV 705 Query: 691 NDERVKKIKLT 701 + ++ + Sbjct: 706 DLVDWRRTEKE 716 >gi|91774719|ref|YP_544475.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT] gi|91708706|gb|ABE48634.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT] Length = 731 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 96/627 (15%), Positives = 207/627 (33%), Gaps = 124/627 (19%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + F +L + + + K ++ + +N K+ ++ Sbjct: 103 LRAHHREAELPPTFQILDTA---DQLSAIKRVM-KAMNIDDEKFPP--KQVLGYINSCKE 156 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + + + + Y++ ++ V+DF +L++ +LL IR Sbjct: 157 EGLRAYAVDAYDSHSQRMREIFEEYDKQCQREGVVDFAELLLRCYELLSSN---KSIREH 213 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 Q +IL+DE QDT+ +Q+ ++ L + +FAVGD+ QSIY+F GA Sbjct: 214 YQQRFKYILVDEFQDTNRLQYLWLKLLAG----------TNNCIFAVGDDDQSIYAFRGA 263 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + ++++L ++RS ++IL + + N G + Sbjct: 264 RVGNMRDFEHDFNVQ--------NVVKLEQNYRSHSNILDAANAIIMHNRNRLGKN---- 311 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + + A I Sbjct: 312 -----------------LWTSAGKGE--------------PIRIYEGYNDKDEAVFIVDE 340 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I + I+ I +L R + ++ + Sbjct: 341 IKALHKEG----------IELSQIALLYRSNAQSRILEHEL----FSAGLPYRVYGGLRF 386 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + +K +A R I + +DD + + ++ P + ++ R + ++++ Sbjct: 387 FERAEVKHALAYLRLIANGDDDTALLRVINFPTRGIGARSLEQLQELARQQDSSLWQAAC 446 Query: 472 KFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528 A G + + + ++ + + + L R + + G + + Sbjct: 447 AKAGDGRPGRGLEGFVALVKQMQEESIGLTLAEQVELATRLSGLRDHYAADKEGEDRLAN 506 Query: 529 LDEFLNFTLRN---------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 LDE +N + ++N ++ L L + + +++MTVH Sbjct: 507 LDELVNAAIAFMNQDIGMPVDENGEVAMSMLAQFLAHASLEAGEHQADVGRDALQLMTVH 566 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 AKGLE VF+ +F H+ Sbjct: 567 AAKGLEFHTVFISGLEEGLFPHEQS----------------------------------S 592 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + EE RL+YV +TRA +L + Sbjct: 593 YESNGLEEERRLMYVAVTRARQRLYLS 619 >gi|329118654|ref|ZP_08247358.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] gi|327465389|gb|EGF11670.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] Length = 805 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 99/643 (15%), Positives = 206/643 (32%), Gaps = 122/643 (18%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ ++ A Y++ ++ V+DF +L++ + +LL Sbjct: 217 RTLQGFINAQKESGLRANAIEAPDPHTRRLIECYAEYDKVCQREGVVDFAELMLRSYELL 276 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + +FAVG Sbjct: 277 QNNEM---LRRHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFAVG 323 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + ++L ++RS +IL + V Sbjct: 324 DDDQSIYRFRGAHVGNMAALMNEFHISEP--------VKLEQNYRSVGNILAAANAVIEN 375 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + +++ D Sbjct: 376 NDERLGKNL---------------------------RTDAEAGDKIRFFSAPSDFDE--- 405 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ + ++ + VL R + +I Sbjct: 406 -----AQFVIEETKSLQREGKSL----------NETAVLYRSNAQSRVIEQAL----FRS 446 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 + + IK +A R ++ +DD + + ++ P I + T Sbjct: 447 GLPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINMPPRGIGARTIENLQTAS 506 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 ET A +K ++ I L + + I+ + + ++ Sbjct: 507 AETGVSLWQAACAAGAKAAKVAAFVRLIENLRTQVGQMPLAEIMSGIVRDSGLVEYYQTQ 566 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E++++ L E +++ L + Sbjct: 567 KGDHQDRLDNLDELVNAAIAFKPEESNFEILPENAAADPAFPILAFLSNAALESGENQAG 626 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 + V++MTVH AKGLE VFL F + Sbjct: 627 EGEDAVQLMTVHAAKGLEFDTVFLTGMEEGRFPSE------------------------- 661 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 + ++ +E RL+YV +TRA +L I ++ + +T + + Sbjct: 662 ---------LSLAERGGLQEERRLMYVAITRARKRLYISMAQ----QRMLHGQTQFGVPS 708 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729 L+ + + P + ++ Sbjct: 709 RFVEEIPPEVLHFLSPHKTATTFADKPRRSDIPAADTYQPAQS 751 >gi|90962321|ref|YP_536237.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118] gi|90821515|gb|ABE00154.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118] Length = 744 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 115/807 (14%), Positives = 236/807 (29%), Gaps = 133/807 (16%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L Sbjct: 30 GAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERVNNLMGEGAEDIWVST 89 Query: 66 FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L L + ++ +++ +K+ L + K R + + Sbjct: 90 FHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQVLNDLNIDTKKYDPRAILSVISNA 149 Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 L + Y+ N +DF+DLI+ T L + + Sbjct: 150 KNDLLDPKDYAQQANGPFEEIVSKAYFEYQNQLANNQAMDFDDLIMQTIRLFNES---SE 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 ++ ++I +DE QDT+ Q+E++ L + R L VGD QSIY Sbjct: 207 TLEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKY----------RNLCVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + ++ + ++I+L ++RST +IL + V N + + Sbjct: 257 WRGANMENIMNFEEDYP--------DATVIKLEQNYRSTKNILAAANNVIENNVNRKDKT 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + ++ + A Sbjct: 309 ---------------------LW-------TDNKQGDKIHYYRANNANEE-------AYY 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I I + D +L R + +I I Sbjct: 334 VVKKIQEQIRNNGR---------HYGDFAILYRTNAQSRIIEETF----VKTNIPYKLVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I D +A R + + D +SF ++ P + + K+ + ++ Sbjct: 381 AHKFYDRKEIMDTLAYLRLVTNPADSMSFERIVNEPKRSIGSVTVGKLRTFSQIHGMSML 440 Query: 468 EYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + A ++ + + I +L + + + IL + Sbjct: 441 EASKSAALAGVSAKASNELEKFAEMIEQLHEYQKAHNVTEVTERILDVTGYKANLQREDT 500 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVRIM 575 E ++ L+EFL T + +Q+ +E + L + +EV +M Sbjct: 501 LENRNRLENLEEFLTVTKQFDQDWEPEDEESDPFVDFLADLALVSDQDSVEEEPDEVTLM 560 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVVFL+ +F Sbjct: 561 TLHAAKGLEFPVVFLMGLEEGIFPLSRAVMDENELEEERRL------------------- 601 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 YVG+TRA ++L + + KS + + + Sbjct: 602 ---------------AYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEELIQS 646 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + ++ + + T+++ + + K Sbjct: 647 DNQTVASTTLTSKRTRSREVPFSKKPKYRMPAGTVERPKETGADKQSWNIGDKISHKAWG 706 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR 782 + G+ + + + R Sbjct: 707 TGTIVKVSGDGEDTELDIAFEGKGIKR 733 >gi|83951554|ref|ZP_00960286.1| DNA helicase II, putative [Roseovarius nubinhibens ISM] gi|83836560|gb|EAP75857.1| DNA helicase II, putative [Roseovarius nubinhibens ISM] Length = 782 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 113/636 (17%), Positives = 197/636 (30%), Gaps = 121/636 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+ ++ +DF DL+++ + + I + + +IL+DE QDT++ Sbjct: 195 ALYTLYQTRLRELNAVDFGDLLLHMVVIFQSH---QDILDRYQRWFRYILVDEYQDTNVA 251 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L S R + VGD+ QSIY + GAE +LR ++ Sbjct: 252 QYLWLRLLA----------SGHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RSTA IL V + + G +LW Sbjct: 296 --GAHVVRLEQNYRSTAHILAAASGVIAGNKGRLGK---------------------ELW 332 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++D + AR I I +M R I Sbjct: 333 -------TEAEGGEKVRLIGHWDGEEE-------ARWIGEEIDSMQRG-----TRGMRPI 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ +LVR + + L I+D MA R ++S Sbjct: 374 GLDDMAILVRASHQMRAFEDRF----LTIGMPYRVIGGPRFYERLEIRDAMAYFRLVVSP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE------YIQKFANCGISKFQHV 484 DDL+F ++ +P + KI T R + + E + G ++ Sbjct: 430 SDDLAFERVVNTPKRGLGDKAQQKIQMTARENSVPLLEGARILLEQKGLGGKGGAELGRF 489 Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 ++ I + + S + +IL + + + E ++ L E + + Sbjct: 490 VENITRWGRMVGDEAISHIELAEMILDESGYTEMWQNDKTPEAPGRLENLKELVKALEQF 549 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + +V IMT+H AKGLE P VFL +F Sbjct: 550 EN--------LQGFLEHVSLIMDNEQEEAGEKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 601 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 602 SQRS--------------------------------MDESGLKGVEEERRLAYVGITRAE 629 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + I + ++ + M LT Sbjct: 630 EICTIS----FAGNRRVFGQWQSQMPSRFIDELPEEHVEVLTPPGLYGGGYGAAGMGVTG 685 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + +++ + + E Sbjct: 686 DIESRVAAADGYNSPGWRRLQARASERPISQPRESK 721 >gi|153806585|ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185] gi|149131262|gb|EDM22468.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185] Length = 817 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 94/611 (15%), Positives = 191/611 (31%), Gaps = 121/611 (19%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E + +DF+DL++ T L + + + + ++L+D Sbjct: 197 AAKMPAIRDIYTRYWERCRWAGAMDFDDLLVYTYILFRDFPD---VLARYRDQFRYVLVD 253 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ LT++ + + VGD+ QSIYSF GA+ +L +I Sbjct: 254 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 303 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E + S Sbjct: 304 YP--------DTKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 343 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 344 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 376 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + +L R + + R + IKD++A Sbjct: 377 -----FRYGYAEFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 427 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + +++ + + Sbjct: 428 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDNGVSLWAALCEPLSYGLNINK 487 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I I + ++ T I+ E + ++E Sbjct: 488 GTHAKLQGFRELIEGFITGQADKNAYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEEL 547 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + ++ +MTVH+AKGLE Sbjct: 548 VNGMNDFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 606 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F EE Sbjct: 607 NVFVVGLEENLFPSGMAGDSP----------------------------------RALEE 632 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D + ++ + Sbjct: 633 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVHYLQLPHEAGVSRSVD 692 Query: 707 DEWIAYEWSTH 717 + + Sbjct: 693 EGAGRFRREIE 703 >gi|158317729|ref|YP_001510237.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec] gi|158113134|gb|ABW15331.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec] Length = 851 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 100/710 (14%), Positives = 203/710 (28%), Gaps = 142/710 (20%) Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 + L + ++E + + ++T + A Y++ + LDF Sbjct: 197 RHTARGLAAAISALKNELVDWETARD-----RATNHIERTVAEVYAAYQQRLTQANALDF 251 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 +DLI+ T +LL+ + + H+L+DE QDT+ Q+ +IR L + Sbjct: 252 DDLIMTTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLIRELVGRSASSADE 308 Query: 210 HSSPR-------------------------------TLFAVGDEKQSIYSFHGAEPKRVL 238 ++ L VGD QSIY+F GA + ++ Sbjct: 309 PAAGSGEAVYSGGSAEPDGAGWPAKAVPPSGAVPSAELCVVGDADQSIYAFRGANIRNIV 368 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 ++ ++I L ++RST IL+ + V + + S Sbjct: 369 EFEQDFPN--------AAVILLEQNYRSTQTILSAANAVIARNAQRKPKRLWS------- 413 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + ++ + + A +A I + Sbjct: 414 ---------------------DAGDGERIVGFVADNEHDE-------AAFVAEEIDRL-- 443 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 G + + + D+ V R + + + + + I Sbjct: 444 -------GDENLARPADVAVFYRTNAQSRVFEEIF----IRVGLPYRVVGGVRFYERREI 492 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQ 471 +DL+A R +++ D ++ +L P + + + + + Sbjct: 493 RDLLAYLRVLVNPTDTVNLRRILNVPRRGIGDRAEAMVSAFAERERIAFSEALSRVDEVP 552 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DV 528 A + + + L L + ++ E + Sbjct: 553 GVATRSARSIRDFVALLEGLREQLPAGPL-AVIEATLERTGYLSELVAEDTIEAQGRVEN 611 Query: 529 LDEFLNFTLRN-EQNSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 L E + E+ +L E + ++ + V +MT+H+AKGLE P Sbjct: 612 LRELVGVVQEFTERRPDGTLAEFLEQVALVADADQIPDDDGSDGVVTLMTLHSAKGLEFP 671 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VVFL VF H EE Sbjct: 672 VVFLTGLEDGVFPHMRTLGDPTG----------------------------------LEE 697 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YVG+TRA +L + + S + + + + +++ Sbjct: 698 ERRLAYVGVTRARARLYLTRSQVRSAWGQPAYNPPSRFLGEVPDSLVEWRRLPEPAPAAG 757 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 + S + + + I+ + Sbjct: 758 GGRFSGGGSAGAGNGSGGSGGKLPSSPFGAKPSRPAARPIIELTPGDRVT 807 >gi|160872666|ref|ZP_02062798.1| UvrD/REP helicase [Rickettsiella grylli] gi|159121465|gb|EDP46803.1| UvrD/REP helicase [Rickettsiella grylli] Length = 1135 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 161/979 (16%), Positives = 317/979 (32%), Gaps = 140/979 (14%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER-- 65 S ++ + + + LW L V +N+ ++ +L + +Q S + ++ Sbjct: 212 SPDDLRKTLEQSLWDLNQNNVKQLNQLINPHDAQKLLKLLNFSLQQRQRSPLKRHDDLTF 271 Query: 66 FSLLSSFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 ++ S LT + T ++ + + K+ LK ++ + + + + + + Sbjct: 272 WNAASHLVLTAQDTFRQRLGKAEGFTIDATSKNKILKTEINRLKSQLLDLIHDLSQQPGV 331 Query: 121 KST--------------------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K T + L L AH + ++ +D ++++ L Sbjct: 332 KETFIALKHAPPSHYTETQWKILKSLFELLPVLVAHLKIVFQQQKKVDHTEVLLAACSAL 391 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + + +D I H+L+DE QDTS +Q +I L + RTLF VG Sbjct: 392 GHPENPTDLALALDYHIQHLLVDEFQDTSPLQLRLIEKLITGW-----EKQDGRTLFLVG 446 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D QSIY F AE L ++ + L ++FRST+ I+ V+ FS Sbjct: 447 DPMQSIYRFRKAEVCLFLEVRQR-----GIGSFPLQPLTLRVNFRSTSGIVDWVNHSFSQ 501 Query: 281 ----PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 N + + + + S + W+ + Sbjct: 502 LLPDNPNRSIDAIGYSPSDAYTCSSQAEKSVFTYWQLAEDSVLGEIAE------------ 549 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 A +I TI + D I +LVR R I R Sbjct: 550 ---------AEQIVTTIQKIKREDPS-----------GSIALLVRSRSHLHPILPRLRQA 589 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 K I + L + A++DL++L R + D +S++ +L+SP S D+++I Sbjct: 590 K----IPYQALEIDSLAEKSALQDLLSLTRALHHFGDSISWLALLRSPYCGLSLRDLYQI 645 Query: 457 CTQRHETE--TVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 + + T++E +++F + + ++ + + S + Sbjct: 646 IQWNDKNKKTTIWEQLKEFEKIPLSLKTKQRLRRIVPVLKYSLQQQGRVSFPQWVKQTWL 705 Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569 G E +D ++ + NF + S + + E+ ++ S + Sbjct: 706 YLGGPTTLSH---WEEMDDIETYFNFLATKLKTEGDSF-DFLRIHEELQTLYTQSTSHDT 761 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSK 626 + V+IMT+H AKGLE V L + ++ + P + Sbjct: 762 HAVQIMTLHKAKGLEFDHVILPGLHRSNRPEPYPLLLYSEQRSVLHQKNFLLAPIPIDPQ 821 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 + I + L+ +K Q E RLLYV TR L + + K +++ Sbjct: 822 EPDLIYNYLLAEEQKKNQAERIRLLYVACTRTKKSLHLFGTFTQDSAGKLQSPDKQSLLH 881 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + ++ T + K P Sbjct: 882 HLWPILSIKS--------EHLLSVSKSRVNQKNSTTQTVLKRLPATWQSPVSPMKSFEIP 933 Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR----- 801 S + G +IH+LL I Sbjct: 934 TTMPSQPVVYHWHSHTE----------------RIFGTVIHRLLYQISQDGLEHWIKKIN 977 Query: 802 --KNFITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDSY---SEVSVSGK 854 + + L L + +++ P +S + SE +++ Sbjct: 978 QSQTLLAGLLAHYGLLDSEIPNVLITLKRCLEKVIACPRARWILSQQHWMAESEYAITVI 1037 Query: 855 INCPKKDIIISGRIDQISISQQN--IFIFEYKT----HHHVPQEIEHIPYTHIAQLSIYE 908 ++ ++ ID+ I +I +YKT + ++ H QL+ Y Sbjct: 1038 LHGKCENF----IIDRTFIDPATCSRWIIDYKTTNYQGNQPDLFLKEAKQRHQEQLNGYA 1093 Query: 909 KILKDSYPN-KSLVCLLIY 926 + + K + C L + Sbjct: 1094 RAF--LHDKPKKICCGLYF 1110 >gi|161829860|ref|YP_001595927.1| DNA-dependent helicase II [Coxiella burnetii RSA 331] gi|161761727|gb|ABX77369.1| DNA helicase II [Coxiella burnetii RSA 331] Length = 720 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YE+ +++ ++DF L+ SA +R Q HIL+DE QDT+ IQ Sbjct: 174 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 230 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +++L + V AVGD+ QSIYS+ GA+ + + R Sbjct: 231 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST IL + V +N G LW Sbjct: 273 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 310 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + F+ + A + I + Sbjct: 311 ------TDSPTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 347 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D+ +L R + L D +I + IKD +A R + ++ Sbjct: 348 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 403 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ P + + T R ++++ Q ++ QH I Sbjct: 404 DDAAFERVVNVPTRGIGNTTLVALRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 463 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542 + + L + + +L + G ++ L+E +N T + Sbjct: 464 ELVDRLQDETKNLPLAEQTEKMLMGSGLLALYKKDNSEKGLSRVENLEELINATSQFTPR 523 Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +L L + L ++ H + V +MT+H AKGLE P+V + +F H+ Sbjct: 524 DDLALSPLDAFLSHVALETGEEQASAHSDCVTLMTLHAAKGLEFPLVIISGLEEDLFPHR 583 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YVGMTRA ++ Sbjct: 584 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 609 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 LI+ + + + + Sbjct: 610 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 648 >gi|298530047|ref|ZP_07017449.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] gi|298509421|gb|EFI33325.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] Length = 1142 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 141/968 (14%), Positives = 312/968 (32%), Gaps = 129/968 (13%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK-KAQTLQQASQT-----QCIEERF 66 E + + +P ++ I + + K + L + Sbjct: 230 EEELKEVSRLMPLEELPRIARLAGFAASNLQDEDQKSTLERLAGLDSLPGCNCRDHPAWL 289 Query: 67 SLLSSFFLTQKFTPQKNI-----ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 L+ F LT+ T ++ + P+LK +L++ + +F + Sbjct: 290 D-LARFCLTKGGTIRRTADKSLGFPAPSGTRDPELKVRLEEMKAQFKACMQTLACIPGLE 348 Query: 122 S--------------------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 A + + A + + +DF ++ L Sbjct: 349 MRLQEVRLLPGTTYSGSQWQTLEALFDVLRLAAACLQLEFQDQGSVDFTEITTRARQALG 408 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 + + +D I H+L+DE QDTS+ Q++++ +LT + G RT FAVGD Sbjct: 409 TDEDPTDLALVLDSRIQHLLMDEFQDTSISQYQLLLALTAGWTPGDG-----RTFFAVGD 463 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 QSIY F AE L+ + + L ++FRS A I+ ++ F P Sbjct: 464 PMQSIYGFREAEVGLFLQARSQ-----GLDHIPLEPLRLTVNFRSQAGIVDWANQAF--P 516 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 + + T ++ + S QV D+ P+ Sbjct: 517 RVLPEVEDQMTGSVPYSGSHAFLPPLEDPAVQVHPFFDADFQPE---------------- 560 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + I +++ G + +LVR R R Sbjct: 561 --------SSRIVSLVQQARQEDPG-------GTVAILVRSRPHLQAALPALR----QSG 601 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 + + L+ I+DL +L R + +L+++ +L++P +D+ + + Sbjct: 602 LEYQAVEIDPLSRRPVIQDLCSLARALTHPGHNLAWLAVLRAPWCGLDLEDLAILAADKD 661 Query: 462 ----ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 + + + G + V + + + + Q A G Sbjct: 662 AFIVNRIQDQDILSSLSPQGRRRLDRVREILLKFLQQRQRSGLRSQVESCWKALGGPDCL 721 Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMT 576 S+ DV L L + S ++ ELE ++ ++++MT Sbjct: 722 HSQSQRRDADVFFRLLQQRLEH------SPHRVVDELENAVAGLYAGPDTSAGQDLQVMT 775 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ---SKSRNNIVS 633 +H AKGLE V + G S ++ + + + + P+ + ++ + + Sbjct: 776 IHKAKGLEFDTVIIPGLGRAPGSDENPLLVWMERTSPRGHTDLLMAPKTATGEDKDPVYA 835 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + + + T E RLLYV TRA +L + H+ + + ++ ++ + + Sbjct: 836 YIQRLMARKTSHEDGRLLYVACTRARKRLHLLGHTGLTEKGLPSKPAGGSLLESLWPAVK 895 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 +E + P + REE + + P + Sbjct: 896 D----------------EFERAAATPRDDADTREEHGASAGQTLYRLHQDWQPPRLPAGI 939 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-----QVIFTLPEHKRKNF---- 804 + S D ++ + + G +H+ + + I K + Sbjct: 940 TTP-SDSRPDPGQESIVFDWAGETIRLA-GTCVHRWMLTMAEEGIHKWSVKKIRGLKSVF 997 Query: 805 ITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863 +E +L+ L + + + ++ Sbjct: 998 ARQLMDLGMLEKSLEEGVDLVQQALENTLNHDTGRWILGPRQRA--RNEYALSGLDNGQA 1055 Query: 864 ISGRIDQISISQQNI-FIFEYK----THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 ++ +D+ + + +I +YK + V + ++ + ++ Y ++++ + P Sbjct: 1056 VAVSMDRTFVDDAGLRWIIDYKISRHSGKDVQRFLDQEQARYQERMQTYARLMQAAEPG- 1114 Query: 919 SLVCLLIY 926 + L + Sbjct: 1115 PVELGLYF 1122 >gi|257054559|ref|YP_003132391.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM 43017] gi|256584431|gb|ACU95564.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM 43017] Length = 817 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 102/622 (16%), Positives = 173/622 (27%), Gaps = 142/622 (22%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 A Y+ + LDF+DLI T +L + + + H+L+DE QD Sbjct: 184 RRAAEAYREYQNRLAQANALDFDDLIARTVELFQ---AFPDVAEHYRRRFRHVLVDEYQD 240 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +IR L S L VGD QSIY+F GA + + +R Sbjct: 241 TNHAQYTLIRELVGTGPTESGLPPSE--LCVVGDADQSIYAFRGATIRNIEEFERDFP-- 296 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL+ + V S + Sbjct: 297 ------DARTILLEQNYRSTQTILSAANAVISRNPGRREKR------------------- 331 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW D+ + + + S A +A I ++ Sbjct: 332 --LW------TDAGQGERIVGYVA--------DSEHDEAAFVAEEIDALVDRGE------ 369 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D+ V R + + + + + +KD +A R Sbjct: 370 ---AKYSDVAVFYRTNNQSRVFEEIF----IRLGLPYRVVGGVRFYERKEVKDALAYLRV 422 Query: 428 ILSQEDDLSFVCMLKSPLFNFS---------EDDIFKICTQRHETETVYEYIQKFANCGI 478 + + ED +S +L P + +I + V I Sbjct: 423 LANPEDTVSLRRILNVPKRGIGERAEAVVATHAERERISFASALRDAVAGRIPLLNPRSQ 482 Query: 479 SKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534 ++ I L + + D +L R + + ++ LDE + Sbjct: 483 KAITAFVELIDGLRELVDEGTDVADVLEAVLDRTGYRAELEGSDDPQDASRLENLDELVT 542 Query: 535 FTLRN--------------------------EQNSYSSLQELISELEQYPPTIKR----- 563 + SL + + Sbjct: 543 VAREFTEFARSVGEDTGTSEDTDVATDFEDADVAEPGSLSAFLERVSLVADADSVPSPDG 602 Query: 564 ---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 + V +MTVHTAKGLE PVVF VF H Sbjct: 603 EGADEADEDGVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHLRALGEP------------- 649 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680 E RL YV +TRA +L + + + + Sbjct: 650 ---------------------KELAEERRLAYVAITRAQRRLYVSRALVRNAWGQPMSNP 688 Query: 681 WYDMVYDSFHNDERVKKIKLTN 702 + + +++ + Sbjct: 689 ASRFLDEIPAELVDWRRLAPSG 710 >gi|258406095|ref|YP_003198837.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] gi|257798322|gb|ACV69259.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] Length = 1132 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 144/971 (14%), Positives = 301/971 (30%), Gaps = 135/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSL 68 + + + ++ ++ +Y + ++E T+L +++ + Sbjct: 225 SRALAELTVFFGDERGEELLELLRYAAANLERDGKTLLANCLGVEEFPDPDPAALPFWRD 284 Query: 69 LSSFFLTQKFTPQKNIIT--------------QEINKKSPDLKEKLKKSQDEFIKIRDRF 114 + F LT +K++ + K S + + L + + + Sbjct: 285 VCDFLLTDSNQWRKSVTKGLGFPAPSSVGTAQKAQAKDSKERWQSLVADLADEEGLLETL 344 Query: 115 NTYKMFKS----------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 + A L + K A + +DF ++ + L + Sbjct: 345 QMVRGLPEGNYSDAQWTVLQALLAVLKLATAQLLLVFQGAGEVDFIEIGMQARHALGEPQ 404 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + +D I HIL+DE QDTS+ Q+E++ L + RT F VGD Q Sbjct: 405 APTDLALSLDYRIQHILMDEFQDTSVTQFELLERLVAGW-----QPDDGRTFFGVGDPMQ 459 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 SIY F AE L+ R + L ++FRS A ++ V+ VF Sbjct: 460 SIYRFREAEVGLFLQA-----ARNGIGDIPLEPLVLSVNFRSQAGVVNWVNAVFPDVM-- 512 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + V SQ + + + ++ + Sbjct: 513 --------------------PTQPEAMTGAVPYTPSQTIRAANAEHAVSVHPRRAANEAA 552 Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404 A +A +I + T I VL R I R I Sbjct: 553 EAEEVAASIQTTLETVPQHER----------IAVLARAANHLVPIVQRLR----RDGIPF 598 Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464 D + + + DL+AL R + D L+++ +L++P S D+ + + Sbjct: 599 QAVDIDPVIEKPVVSDLLALTRALARPADRLAWLAVLRAPWCGLSAGDL--CTVAQECSG 656 Query: 465 TVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++ ++ + Q V+ + ++ ++ + + + A G Sbjct: 657 PLWPALEGAVQEQTVSASGQHRLQRVVGSLRPVLEQREYIAFYKGVEMAWHALGGPACLT 716 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 E V E L S +E+ L + V++MT+H Sbjct: 717 DADEQEAARVFFELLRHLST--GGRTPSPEEVEEGLANLRARPEPD---GAARVQLMTIH 771 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI---WIPQSKSRNNIVSDL 635 AKGLE V + G M + + P + Sbjct: 772 KAKGLEFETVIIPGLGRGTPPVDRRLLMWQEVPRDTGGEDLLLAPVPPTGGKPEATYRYI 831 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + K T+ E R+LYV +TRA ++L + + + + Sbjct: 832 QQLEKTKTRLEEGRVLYVAVTRARERLHLFGAAKQRADGTLAPVS--------------- 876 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 S+ + W + + ++E + + + + + P Sbjct: 877 ------GSLLELLWPHVKDRFEACQGAAEDQEGVQPEAQQGYWLRRLPANWEVPAV--PV 928 Query: 756 ILNPSTIDTKGKTNLESLLSDNQT---FNRGLIIHKLL--------QVIFTLPEHKRKNF 804 + S +G++ +E D G +IH+ L Q + + Sbjct: 929 RVGGSARGVEGQSRVERPEFDWAGRTVRRIGTVIHRWLMRVAQETEQHWHERSLARCREA 988 Query: 805 ITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKK 860 + P + ++ ++L + ++ S E ++G ++ Sbjct: 989 FRRDLVGEGVVGPELSAAVDRVEQALAQILSDRRGQWLLASHSEARCEYPLTGALDGELH 1048 Query: 861 DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSY 915 +++ D+ + +I +YK H ++E + QL Y +++ + Sbjct: 1049 SVVL----DRTFVDGQGQRWIVDYKAGRHSGSDLEAFLDREQERYREQLETYARLVA-LW 1103 Query: 916 PNKSLVCLLIY 926 + + L + Sbjct: 1104 EKRPIRLGLYF 1114 >gi|314914443|gb|EFS78274.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA4] Length = 810 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYTPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|300782729|ref|YP_003763020.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] gi|299792243|gb|ADJ42618.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] Length = 804 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 116/750 (15%), Positives = 217/750 (28%), Gaps = 143/750 (19%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LSS 71 + + P ++ NK + E + ++A + ++ +SS Sbjct: 68 RRVHPGEIMAITFTNKAAAEMRERVAALVGRRANAMWVSTFHSMCVRILRREAKVLDMSS 127 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTL--ASLT 128 F K +IT D K + +++ + + Sbjct: 128 SFSIYDSDDTKRLITLVARDLDIDPKRYAARTLAVHISNLKNELTDPETAAANAGNDLER 187 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + Y+ + DF+DLI+ T LL+ + + H+L+DE QDT Sbjct: 188 RVAEVYGEYQRRLNQANAFDFDDLIMRTVSLLQTFPD---VAEYYRRRFRHVLVDEYQDT 244 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ ++R L P L VGD QSIY+F GA + + +R Sbjct: 245 NHAQYTLVRELAG--TAPNEAGVEPAELVVVGDADQSIYAFRGATIRNIEEFERDFPN-- 300 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 I L ++RST IL + V N + Sbjct: 301 ------AHTILLEQNYRSTQTILNAANAVIERNPNRRAKR-------------------- 334 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW DS + + + D A +A I + Sbjct: 335 -LW------TDSGDGEKIVGYVADNDHDE--------AAFVAGEIDALAEKGE------- 372 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 D+ V R + + + + + ++D++A R + Sbjct: 373 --ADYSDVAVFYRTNNQSRVFEEIF----IRLGLPYKVVGGVRFYERREVRDMIAYLRVL 426 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK--------FANCGIS 479 + ED +S +L P + + E + + ++ + Sbjct: 427 ANPEDTVSLRRVLNVPKRGIGDRAEAVVATHAERERISFAQALRDAVEGKVPLLNPRSVK 486 Query: 480 KFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + + EL + A HD +L R + + ++ LDE + Sbjct: 487 AIGGFVAMLDELGMLVADGAEVHDVLEAVLDKTGYRIELEESEDPQDHTRVENLDELVTV 546 Query: 536 TLRNE----------------QNSYSSLQELISELEQYPPTIKRAHSANHNE-------- 571 ++ + L + LE+ + + Sbjct: 547 AREFTEITAEVAADENAEPVVEDGVPAPGSLPAFLERVSLVADADSVPSPDGGEEGDGGA 606 Query: 572 --VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629 V +MTVHTAKGLE PVVF VF H Sbjct: 607 GVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHMRALGDP---------------------- 644 Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689 + E RL YV +TRA +L + + S + + + + Sbjct: 645 ------------AELAEERRLAYVAITRARKRLYVSRAITRSAWGQPSMNPASRFLDELP 692 Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + ++++ ++S + Sbjct: 693 PDLVDWRRLEPSSSGFGSFGSGSRGTPRAA 722 >gi|320527942|ref|ZP_08029108.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei F0204] gi|320131568|gb|EFW24132.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei F0204] Length = 743 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 113/694 (16%), Positives = 215/694 (30%), Gaps = 132/694 (19%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 L+ G ++ L + + + V + ++ + + + + Sbjct: 40 LRIIAGAGSGKTRVLTMRIVHLIEDEDVWPTKILAITFTNKAANEMKERVRNMLASQTSA 99 Query: 61 CIEERFSLLSSFFLTQK----FTPQ-----KNIITQEINKKSPDLKEKLKKSQDEFIKIR 111 L L + P+ + + K++ L + + + + + Sbjct: 100 PWVSTIHSLCVRILREDIIAMGYPRNFTIMDTEDQKSVLKEAYKL-QGIDATTYSYSSML 158 Query: 112 DRFNTYKMFKST-LASLTLA---------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 D K T +L LA + Y++ ++ LDF+DLI+ T + Sbjct: 159 DYIANNKTADITPERALVLAGDYHADKVKAEVYTFYDKRQRDLYALDFDDLILWTVRMFA 218 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 K I K + N+IL+DE QD Q+E+I +T L VGD Sbjct: 219 KFPE---ILEKWQRHFNYILVDEFQDIDKKQYELINQITG----------PMNNLLVVGD 265 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 Q+IY++ GA+ ++ + + I L ++RS IL + V Sbjct: 266 PDQTIYTWRGADVNIIMNFAKDYPQ--------AKTIILNENYRSVEAILNGANSVIKNN 317 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 + + + + +++ D Sbjct: 318 KYRVDKELFTNRH---------------------------SDEKITHYSAASDE------ 344 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 A IA IS++ DI +L R + + D + Sbjct: 345 --YQAAWIASKISSLHREGK----------SYHDIAILYRSNYLSRSLEKAL----LDER 388 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QR 460 I + + +KD + R + + DDL+ +L P + I R Sbjct: 389 IPYIIYGGTRFYERQEVKDALCYLRMVTT-ADDLALQRILNRPKRGIGNKTMDLIVETAR 447 Query: 461 HETETVYEYIQK---FANCGISKFQHVIKYIHELIHIAQFCSP--HDFFTLILGAKKGRQ 515 ++YE ++ F+ ++ ++ + + A F I+ R Sbjct: 448 ARNTSMYEVLKDSSLFSGKMLTTMENFVNMVESWRKRANSGEVEIFKLFEKIIEESGYRA 507 Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + I+ L E ++ + S L L+ R + + V++M Sbjct: 508 MLEEAKEQDRIENLKELIDDVKEFSETYPES--TLDEYLQLVSLYGDREETLASDFVQLM 565 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 TVH AKGLE VF+ D +F ++ Sbjct: 566 TVHAAKGLEFDTVFISDMNEGIFPNERAVN------------------------------ 595 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 EE RL YV TRA ++L + + Sbjct: 596 ---ESHRGVEEERRLAYVAFTRARNKLYLTEAGG 626 >gi|254383079|ref|ZP_04998433.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1] gi|194341978|gb|EDX22944.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1] Length = 847 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 123/721 (17%), Positives = 225/721 (31%), Gaps = 145/721 (20%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P VS + + + + + + Sbjct: 125 AAGEMRERVEGLVGPRANAMWVSTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 179 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+K + N K +LK +L F+ T Sbjct: 180 RLMALVCRDMDLDPKK-FPPKAFNAKISNLKNEL------IDDEAFAAQAVDGFEKT--- 229 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 230 ---LAQAYALYQGRLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 283 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L P L VGD QSIY+F GA + +L+ + Sbjct: 284 DTNHAQYTLVRELVG----TGYPDLPPAELCVVGDADQSIYAFRGATIRNILQFEEDY-- 337 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + + I L ++RST IL+ + V EN + + Sbjct: 338 ------KDATTILLEQNYRSTQTILSAANAVIERNENRRAKN------------------ 373 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ + + + A+ +A I + D Sbjct: 374 ---LW------TEAGSGAVITGYVADTEHDE--------AQFVADEIDRLTDAD------ 410 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ + R + + + + + ++D++A R Sbjct: 411 ---DAKAGDVAIFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 463 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--H 483 + + ED++ +L P E I E T + +++ + + Sbjct: 464 VLANPEDNVPLRRILNVPKRGIGERAEAMIDALAMREKITFPQALRRVDEAFGMAARSTN 523 Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 +K + L+ + P +L + + + I+ L E Sbjct: 524 AVKRFNVLMEELRTIVDSGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 583 Query: 536 TLRNEQN----------------SYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTV 577 L EQ +L E + + L I + + +MT+ Sbjct: 584 ALEFEQARATAAAEAAENGAPPVGPGTLSEFLEQVALVADSDQIPDEDTEGTGVITLMTL 643 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 HTAKGLE PVVFL VF H Sbjct: 644 HTAKGLEFPVVFLTGMEDGVFPHMRSLG-------------------------------- 671 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 + EE RL YVG+TRA ++L + + S S + + + + K+ Sbjct: 672 --QTKELEEERRLAYVGITRARERLYLTRSSMRSAWGTPSYNPPSRFLEEIPAEYLQWKR 729 Query: 698 I 698 Sbjct: 730 T 730 >gi|256113967|ref|ZP_05454750.1| DNA helicase II [Brucella melitensis bv. 3 str. Ether] gi|265995308|ref|ZP_06107865.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether] gi|262766421|gb|EEZ12210.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether] Length = 858 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 196/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA + L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKNNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|261400922|ref|ZP_05987047.1| DNA helicase II [Neisseria lactamica ATCC 23970] gi|269209154|gb|EEZ75609.1| DNA helicase II [Neisseria lactamica ATCC 23970] Length = 735 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 98/582 (16%), Positives = 190/582 (32%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + + +FAVG Sbjct: 204 QSNEM---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I + +I VL R + +I Sbjct: 333 -----AQFIVDETKALEREGRNLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P + + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 E A +K ++ I + + IL + + ++ Sbjct: 434 QEQGVSLWQAACNAGAKAAKVAAFVRLIEAFRNQVGQMPLPEIIVGILKDSGLTEYYKTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ L + +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPDNISDDPAFPILAFLSNAALESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH AKGLE VFL F + Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395342|gb|AAS03210.1| UvrD [Mycobacterium avium subsp. paratuberculosis K-10] Length = 774 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 111/749 (14%), Positives = 207/749 (27%), Gaps = 141/749 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + + + L ++ Sbjct: 77 AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRR 133 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + D + Sbjct: 134 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPAAAVANLTD---------GSDELS 183 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 184 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 240 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L P L VGD QSIY+F GA + + +R Sbjct: 241 TNHAQYVLVRELVG---TDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 295 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I L ++RST +IL+ + V + + Sbjct: 296 ------DATTILLEQNYRSTQNILSAANSVIARNSGRRDKR------------------- 330 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 331 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAQKGE------ 368 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + I + I+D++A R Sbjct: 369 ---ITYNDVAVFYRTNNSSRSFEEVF----IRAGIPYKVVGGVRFYERKEIRDIIAYLRV 421 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIK 486 + + D +S +L +P + + + + + + A + + Sbjct: 422 LDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAE 481 Query: 487 Y-------IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + + D +L R++ S + +D L+E ++ Sbjct: 482 KAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELVSVA 541 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRA--------------------HSANHNEVRIMT 576 ++ L L+ V +MT Sbjct: 542 HEF-STDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMT 600 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +HTAKGLE PVVF+ +F H + Sbjct: 601 LHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPV---------------------------- 632 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 E RL YVG+TRA +L + + S+ + + + + Sbjct: 633 ------ELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPESRFLREIPQELIEWR 686 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725 + S + A + T T Sbjct: 687 RTAPAPSFSAPVSGAGRFGTPRAAPTRAA 715 >gi|254719445|ref|ZP_05181256.1| ATP-dependent DNA helicase pcrA [Brucella sp. 83/13] gi|265984450|ref|ZP_06097185.1| UvrD/REP helicase [Brucella sp. 83/13] gi|306839222|ref|ZP_07472039.1| DNA helicase II [Brucella sp. NF 2653] gi|264663042|gb|EEZ33303.1| UvrD/REP helicase [Brucella sp. 83/13] gi|306405769|gb|EFM62031.1| DNA helicase II [Brucella sp. NF 2653] Length = 858 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 196/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPRGAGERSELGVSENKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAKTILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|325143147|gb|EGC65493.1| DNA helicase II [Neisseria meningitidis 961-5945] gi|325197521|gb|ADY92977.1| DNA helicase II [Neisseria meningitidis G2136] Length = 735 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASQEQGVSLWQAACNAGAKAAKVAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMPLPEIIAGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEESRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|292487197|ref|YP_003530069.1| DNA helicase [Erwinia amylovora CFBP1430] gi|292900427|ref|YP_003539796.1| exodeoxyribonuclease V subunit beta [Erwinia amylovora ATCC 49946] gi|291200275|emb|CBJ47403.1| exodeoxyribonuclease V beta chain [Erwinia amylovora ATCC 49946] gi|291552616|emb|CBA19661.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Erwinia amylovora CFBP1430] Length = 1178 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 139/968 (14%), Positives = 303/968 (31%), Gaps = 143/968 (14%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + K W I+ + + + + +Q + + Sbjct: 228 ARISTLKQAWLAAGDLQQVIDASGVDRRSYNSKHLPNWLEKISLWAQAETQDYEVPKDLE 287 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 F + + T++ L +++ E + +RD + + + Sbjct: 288 RFGQRLLLEK----TKKGEPPRHPLFDRIDAFLAEPLSLRDLVIARALQQ-----VRFVT 338 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 ++ K+ + L F+DL+ + L++ + I Q LIDE QDT Sbjct: 339 ------QQQKRLHAQLGFDDLLGRFDAALQQPG-GEALASAIRQRYPVALIDEFQDTDPQ 391 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + R+L L +GD KQ+IY+F GA+ ++ + T Sbjct: 392 QYRIFRTLYR--------RQPDSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT-- 441 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 L ++RS+ ++ V+++FS +N SE + + G +VQ Sbjct: 442 --------LETNWRSSPAMVNAVNQLFSGQQNPFLFSEIPFINVNPAAPNHGLNFSVQ-- 491 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-----NG 366 + P + W D + +AR+ A I + +G Sbjct: 492 --------GKVQPALQFWLQPGDGVGVSDYQQFMARQCAAEICRWLSAGQKGEALMGKSG 543 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++R +QA DI VLVR R + +I L SV ++R + ++++ L + Sbjct: 544 QQRAVQASDITVLVRSRSEAAVIREALNAL---AIPSVYLSNRDSVFTTPEAREMLWLLQ 600 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486 +L+ E + L + LF + + + + + + + + V+ Sbjct: 601 AVLAPEQERILRSALATSLFGTDALALDALSQDERAWDALVDEFVDYRQRWLQ--RGVLP 658 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543 + EL+ +L + G ++ L E L L +E Sbjct: 659 MLRELMMKR------QIAENLLASGNGERRLTDLL------HLGELLQEASATLDSEHAL 706 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L + I + + + + ++ + V+I+T+H +KGL+ P+V+L + Sbjct: 707 VRWLAQQIEQPDGQSASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN-------- 758 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL- 662 ++ + + I+ ++ E RLLYV +TR+ Sbjct: 759 -----FREADNGVYHDRQTFTALLDLQQSEESIELAEQERLAEDLRLLYVALTRSIFHCS 813 Query: 663 -----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 +I ++ +V D L + + Sbjct: 814 VGIGPLIKGTRKKEGNSDLHRSALGYLVQQGEPADATGLLAALQALNSDATALIIAAEAD 873 Query: 718 HPEN-TPLEREETIKQLMDEQKIPKKLF-----------SPIKNDINEPYILNPSTIDTK 765 P T E + + + I + ++ + + Sbjct: 874 APPWQTQQEEVGILSSRTLPRSLRDNWRVTSYSGLQQHGHSIVMEWLPRLDVDAAGEASI 933 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 + + + + G +H L + + + +A+ + + Sbjct: 934 ERVPQLTPHTFPRGAGPGTFLHGLFETLEFSAPLDEEWLAQQL---SAQALGEEWQPVMR 990 Query: 826 LSITRLLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS---------- 865 I R+L+ P+ + + +E + +S + D ++ Sbjct: 991 NWIERILQTPLNETGVSLYQLPAPARKAELQFYLPISRLLTSEALDRVVRQDPLSQPCPP 1050 Query: 866 -----------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905 G ID + Q ++ +YK++ + + Q Sbjct: 1051 LDFHQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQEAMAQAMQAHRYDLQYQ 1110 Query: 906 IYEKILKD 913 +Y L Sbjct: 1111 LYTLALHR 1118 >gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus ATCC 19977] gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus] Length = 807 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 100/622 (16%), Positives = 182/622 (29%), Gaps = 134/622 (21%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + + + Y+ + LDF+DLI T +L++ I ++ HI Sbjct: 189 ELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFP---QIAQFYRRKFRHI 245 Query: 181 LIDEVQDTSLIQWEVIRSLTED--FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 L+DE QDT+ Q+ ++R L P L VGD QSIY+F GA + + Sbjct: 246 LVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSIYAFRGATIRNIE 305 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 +R I L ++RST +IL+ + V + N + Sbjct: 306 EFERDYPN--------AKTILLEQNYRSTQNILSAANSVIAKNANRREKR---------- 347 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 LW + + + A IA I + Sbjct: 348 -----------LW-------TDSGEGELIVGYVADNEHDE-------ASFIAREIDGLFD 382 Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418 DI V R ++ + + I + I Sbjct: 383 RS---------DANYGDIAVFYRTNNNSRSLEEIF----IRTGIPYKVVGGVRFYERKEI 429 Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--- 474 +D++A R + + D +S +L +P + + E + A Sbjct: 430 RDIVAYLRVLTNPGDAVSLRRILNTPRRGIGDRAEACVAVHAETNGIGFGEALADAAAGK 489 Query: 475 -----NCGISKFQHVIKYIHELIHIAQFCSP------HDFFTLILGAKKGRQQFISRFGN 523 + + + ++ + P D +L R + + Sbjct: 490 VAMLNSRSEKAIAAFMDMLDQIRVTLRTDDPGALPDIGDVVEAVLNHTGYRYELENSSDP 549 Query: 524 E---VIDVLDEFLNFTLRNEQ--------------------NSYSSLQELISELEQYPPT 560 + +D L+E ++ SL+ + + Sbjct: 550 QELARLDNLNELVSVAHEFSADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVSLVADA 609 Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620 + ++ V +MT+HTAKGLE PVVF+ +F H + Sbjct: 610 DEL-PESSAGVVTMMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDPV------------ 656 Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680 E RL YVG+TRA +L + + S+ + Sbjct: 657 ----------------------ELAEERRLAYVGITRARQRLYLSRAKVRSSWGQPMMNP 694 Query: 681 WYDMVYDSFHNDERVKKIKLTN 702 + + ++ Sbjct: 695 ESRFLQEIPQELIDWRRTDPLP 716 >gi|303229716|ref|ZP_07316502.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-134-V-Col7a] gi|302515613|gb|EFL57569.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-134-V-Col7a] Length = 1273 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 119/714 (16%), Positives = 217/714 (30%), Gaps = 55/714 (7%) Query: 1 LKNRF-GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT----LQQ 55 L++ G ++ + + + + V A Q Sbjct: 216 LRDTLWGRAMWDDQQAEIDRIADRIEQMEPLLESPVGPKKWDKVYQEQLAALAQLKGAQT 275 Query: 56 ASQTQCIEERFSLLSSFFLTQKFT-PQKNIITQEINKKSPDLKEKLKKSQ-------DEF 107 S + + T +K + + + L + K S Sbjct: 276 WSDMVDVCRNLDTFTKASFTSLGKALEKGEVDGALADEFKSLGSQNKDSLKGMKNGLFHI 335 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KK 162 + + + + L + Y+EAKK+ ++DF DL LL + Sbjct: 336 DESVLQQQFKDQYPLIHNLVELTIAFHKAYDEAKKEQGIMDFSDLEHLCLALLVEPGTED 395 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + ++ I++DE QDT+ +Q +I + S F VGD Sbjct: 396 DPQPSEVALELQDTFKEIMVDEYQDTNGVQETIINLI-----------SRVDNRFYVGDV 444 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 KQ+IYSF A+ I+L +FRS +ILT + +F Sbjct: 445 KQAIYSFRMADSSL---FMNKYNTYGLMNDAVERRIDLAKNFRSHENILTTTNFIFYQIM 501 Query: 283 NAQGLSEDSTTTIRHRSSR-------IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 + D R G V+L S + +S T+ + Sbjct: 502 TQEAAELDYGEKESLIPGRIVEEAPSDWVGGAVELHLLDTSDTNRSDETDGDSETAGDEP 561 Query: 336 LPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 E I I + + ++G R IQ +D VL R Sbjct: 562 ENNERELD----FIIQKIKELHASKKQVQNADGSFRQIQWRDFAVLRRSLAGWGTRAV-- 615 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 I V N+R + I+ L++L + I + E DL +L S L +++ Sbjct: 616 -AAMRQAGIPAVVNERDGYFEAQEIQLLLSLLQIIDNPEQDLPMAAVLHSGLVGLDANEL 674 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + + + I +I +++ D I Sbjct: 675 GAL-RLTGDGSLWSVMPLYAERAQDEQLLQFIAHIERWRTLSRRHGVADLLWDIYEILDY 733 Query: 514 RQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSA 567 G + E + + L + +E + + Sbjct: 734 VNYVGAMPNGLVRRANVMALYERAKGFESSGFRGLFRFLRFVESLRDSNQDMAVANVVTE 793 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + VR+MT+H +KGLE PVVFL + + + + + + Sbjct: 794 ADDVVRLMTIHKSKGLEFPVVFLSGVQKKFNTMDFNSPLLVDKNGGIGLKGYYPDIRVSY 853 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 + + + E R+LYV +TRA D+L + + N +K+ Sbjct: 854 PSMPWLYCKSIKSDAMKAEEQRILYVALTRARDKLFLTGYINKEIKKEKGVGAH 907 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 52/159 (32%), Gaps = 13/159 (8%) Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRLLENPM 836 G ++H+ +Q + ++ + + +E L + + + Sbjct: 1108 TGAQWGTLMHEAMQWLPVKKYTQKSMTDMLDSLQAEGKFSDEERSLLSDRSLYGFFNSDL 1167 Query: 837 MTTAMS-CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHH 887 ++ E+ S + + + + G ID + + + +YKT Sbjct: 1168 GQRLIASKRVERELPFSMLFDGNRVYPDVENGERLFLQGIIDTVFVEDDQWVLVDYKTDR 1227 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + + Q+ +Y++ L+ N + IY Sbjct: 1228 VKSGD--ELIRRYKIQMDLYKEALERL-TNMPVKASYIY 1263 >gi|239995580|ref|ZP_04716104.1| DNA helicase II [Alteromonas macleodii ATCC 27126] Length = 723 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 115/704 (16%), Positives = 216/704 (30%), Gaps = 138/704 (19%) Query: 1 LKNRF---GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57 L N G ++ L+++ W + ++ + + + ++L S Sbjct: 22 LSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVTFTNKAAKEMRGRIESLMGRS 81 Query: 58 QTQCIEERFSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR- 113 F L+ L + +N + + + ++ LK + R Sbjct: 82 LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLIRRILKAMNLDEKHWAPRQ 141 Query: 114 ------------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 + + + A Y++A ++ ++DF +L++ ++L Sbjct: 142 IQWYINGNKDEGLRPQHIETHGDHIQKTMREVYAAYQDACDRSGLVDFAELLLRAHELWA 201 Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221 K + + +L+DE QDT+ IQ+ +R L + VGD Sbjct: 202 KNPE---VLVHYQRRFRAVLVDEFQDTNNIQYAWLRMLCS---------GGNNNIMIVGD 249 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GA + + + + I L ++RST +IL + V Sbjct: 250 DDQSIYGWRGANVDNIQHFLKDF--------NEPTTIRLEQNYRSTGNILKAANTVIDNN 301 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 G +LW + S + F+ L + Sbjct: 302 TGRLGK---------------------ELW-------TEDAQGELISVYAGFNELDE--- 330 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR I I + + D +L R + ++ Sbjct: 331 ----ARFIVSKIKDWLNQGNAL----------TDTAILYRNNAQSRVLEEAL----LHEG 372 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + IKD + R + DD +F ++ +P E + ++ T R Sbjct: 373 LAYRIYGGLRFFERQEIKDALGYMRMVSHPHDDAAFERVVNTPSRGIGEKTLSQVRDTAR 432 Query: 461 HETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 ++++ Q N G K Q + I EL + Sbjct: 433 MHNCSMWQACQLLINEGGFKGRALNAMQSFVLLITELEQSTLDEPLDQQADKAIRQSGLY 492 Query: 515 QQFISRFGNEVI---DVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSA 567 + + G + + L+E + E S L ++ Sbjct: 493 AMYQAERGEKAQARLENLEELVTACKTFIVPEEAEEMSPLAAFLAHASLEAGET--QADK 550 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + + V++MT+HTAKGLE P+VFL +F + Sbjct: 551 DQDAVQMMTIHTAKGLEFPLVFLAGVEEGMFPSQMTNDEPG------------------- 591 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVGMTRA +L I + Sbjct: 592 ---------------RMEEERRLCYVGMTRAMQKLYITYAESRR 620 >gi|254702135|ref|ZP_05163963.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 5 str. 513] gi|261752704|ref|ZP_05996413.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513] gi|261742457|gb|EEY30383.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513] Length = 858 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTEDFFVGK-----------------------------NTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERGELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|30249444|ref|NP_841514.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] gi|30138807|emb|CAD85384.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] Length = 744 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 92/583 (15%), Positives = 179/583 (30%), Gaps = 115/583 (19%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 ++ Q ++ YE + +DF +L++ +LL Sbjct: 138 RQLQWFINNAKEEGLRASQVDVHGGFNQTLAECYQAYEIVSMREGTVDFAELLLRCYELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R HIL+DE QDT+ +Q++ I+ L +FAVG Sbjct: 198 SRNEI---LRDHYRSRFEHILVDEFQDTNRLQYKWIKLLAG------PGSQQHAAIFAVG 248 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + ++ II L ++RS +IL + + Sbjct: 249 DDDQSIYAFRGAHVGNMRDLEKDF--------SVPKIIRLEQNYRSHGNILDAANALIEH 300 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + LW + + + D Sbjct: 301 NKGRLGKN---------------------LW------TAAGKGEPVRVYHAATDMDETS- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 I I + + DI +L R + ++ + Sbjct: 333 -------FIIDEIKALHADG----------LALSDIALLYRSNAQSRVLEHGL----FNA 371 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 +S D +K +A R I +DD + + ++ P + ++ Sbjct: 372 SVSYRVYGGMRFFDRQEVKHALAYLRLIALPDDDNALLRIINFPPRGIGARTLEQLQDQA 431 Query: 460 RHETETVYEYIQK----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 ++++ K + + + + + + ++ Sbjct: 432 AMLGTSLWQAAFKVYEGGKAVATRNSQPGRGIAGFVSLVLSMQQDGEGLPLPEIIRRVID 491 Query: 510 AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSA 567 + + R G E ++ L E +N ++ SL ++ Sbjct: 492 QSGLAAHYQAEREGGERLENLKELINAATSFVHESEDDSLTAFLAHASLEGGE--HQAEG 549 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + V++MTVH AKGLE VF+ +F H++ + Sbjct: 550 YQDAVQLMTVHAAKGLEFHSVFISGLEEGLFPHENSRNEPDG------------------ 591 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL+YV MTRA +L + + Sbjct: 592 ----------------LEEERRLMYVAMTRARQRLYLSYAESR 618 >gi|119773559|ref|YP_926299.1| DNA-dependent helicase II [Shewanella amazonensis SB2B] gi|119766059|gb|ABL98629.1| ATP-dependent DNA helicase UvrD [Shewanella amazonensis SB2B] Length = 721 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 115/721 (15%), Positives = 232/721 (32%), Gaps = 132/721 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ W L S + + ++ + + + + Sbjct: 30 GAGSGKTRVLTHRIAWLLQVENQSPYSILAVTFTNKAAAEMRERVEKIVGHNTGRMWIGT 89 Query: 66 FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L+ L Q ++ + + + LK LK + + R + Sbjct: 90 FHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQRLLKRILKSMNLDEKQYPPRLVAGYINGK 149 Query: 123 TLASLTLAK-------------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 L A L Y+++ + ++DF ++++ ++L + + Sbjct: 150 KDQGLRPAHIDAGPFPMEQKLLELYRIYQDSCDRAGLVDFAEILLRAHELWLNKPH---L 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 HIL+DE QDT+ IQ+ IR L + + VGD+ QSIY + Sbjct: 207 LAHYQDRFRHILVDEFQDTNAIQYAWIRVLAGN----------TANVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R + I L ++RST +IL +++ + + G Sbjct: 257 RGAQIENLHRFLQDFP--------GAKTIRLEQNYRSTGNILKASNELIANNPDRMGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + + S F+ + + AR I Sbjct: 307 -------------------ELW-------TEDKDGEPISLYCAFNEMDE-------ARFI 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 IS+ + + +L R + ++ + Sbjct: 334 VGRISDWQDKGGML----------GECAILYRSNAQSRVLEEAL----LHKGMPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IKD M R I +++DD +F ++ +P E + + T R E T+++ Sbjct: 380 LRFFERQEIKDAMGYLRLISNRDDDAAFERVVNTPARGIGERTLDILRSTARKEQLTLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + I +L + ++ + + + G Sbjct: 440 TSLRLLEEKVLSGRAANAVKGFLDLIVQLRSDTDELPLYRVADHVIQHSGLKAMYEAEKG 499 Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + L+E + E + EL + L + A+ + V++MT+ Sbjct: 500 ENAQARVENLEELVTAARSFEMPEELEDMGELNAFLSHAALEAGEGQADAHTDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+VF+ +F K + Sbjct: 560 HSAKGLEFPMVFMAGVEEGIFPSK----------------------------------LA 585 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 + EE RL YVGMTRA +L I + + + + + + Sbjct: 586 LEEGDRLEEERRLCYVGMTRAMQKLYITYAESRRIYGREDYARPSRFIREIPPEYVEEIR 645 Query: 698 I 698 + Sbjct: 646 L 646 >gi|189183408|ref|YP_001937193.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda] gi|189180179|dbj|BAG39959.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda] Length = 716 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 105/552 (19%), Positives = 193/552 (34%), Gaps = 119/552 (21%) Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 +A+ + HY+ +++ V+DF DL++ + + + + ++ IDE Sbjct: 160 PIYQVAQKIYQHYQTELQQSNVVDFGDLLLYNMKIFSEYPD---VLNFYQTKFKYVFIDE 216 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q+ ++L + L VGD+ QSIYS+ GA + +L+ K Sbjct: 217 YQDTNNVQYFWAKALV----------NLHENLCCVGDDDQSIYSWRGANIENILKFKDDF 266 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + +I+L ++RST ILT + + Sbjct: 267 KN--------AKLIKLEQNYRSTNSILTAASSIICNNKYRHDKK---------------- 302 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW + Q + Y D AR I+ I +I S Sbjct: 303 -----LW------TNKQSDQPIRIVYCYNDREE--------ARFISSEIKKLITKSPNLS 343 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 I VLVR ++ I F D + I D++A Sbjct: 344 -----------IAVLVRSSSQAHVLEESF----FSNNIKYQVIGGFRFFDRMEIADMIAY 388 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFANCGISK--- 480 R +++ D+L+ ++ P + + I + E +++ I++ + + K Sbjct: 389 LRVLVNHNDNLALTRIINVPKRSIGPATLHTIKEYAQQHESSMFTAIEQILSKKLLKPQL 448 Query: 481 ---FQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 Q++I E + + +P +I Q ++ I+ + E + Sbjct: 449 ELTLQNLINKFKEWRSLYKAGYTPAKVTEIICDDSNYLQMLKDDKSSQSDRRIENIQEMI 508 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 L SS++E + + ++ +++ V +MT+H +KGLE VVFL Sbjct: 509 RAMLDY-----SSIEEFLEHASLFLERDNGINAKDNSVVSLMTLHASKGLEFDVVFLPGW 563 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF H+ + + EE R+ YV Sbjct: 564 EEGVFPHQKSLIV--------------------------------EDQRALEEERRIAYV 591 Query: 654 GMTRASDQLIIC 665 G+TRA L I Sbjct: 592 GITRAKQSLYIS 603 >gi|325107376|ref|YP_004268444.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis DSM 5305] gi|324967644|gb|ADY58422.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis DSM 5305] Length = 770 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 101/651 (15%), Positives = 222/651 (34%), Gaps = 117/651 (17%) Query: 50 AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109 A L+Q + +++ F++L S Q ++ + + + + L + Sbjct: 99 ANVLRQRANVVGLQQNFTILDSADQKQA--IKQVLSELDFDAAHYPPGKILATISNAKND 156 Query: 110 IRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + + F+ ++A + + Y++ ++ +DF+DL+++ L ++ + Sbjct: 157 LVSADAFNQQFEESVADHFTAVVARVYPAYQKFLMESNAVDFDDLLLHVVRLFEENEE-- 214 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 +R + D+ +IL+DE QDT+ Q+ ++R+L+++ R L GD QSIY Sbjct: 215 -LRARYDERYQYILVDEYQDTNEAQYRIVRALSQN----------ARNLSVTGDPDQSIY 263 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA+ +LR ++ + +I+L +FRST IL D + + + Sbjct: 264 GWRGAKIDNILRFEKDFE--------DAKVIKLEQNFRSTKLILAAADSLITHNRLRKAK 315 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + V+L S + A Sbjct: 316 ELTTDN---------DEGEPVELLHFPDSGTE--------------------------AD 340 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 IA I +++ + D + R + + + + Sbjct: 341 SIARHIRHLVEEEGR---------DWSDFAIFYRVNSLSRQLELAL----GRHHVPYQVA 387 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 ++D++ I + + +F+ ++ +PL + ++ + + Y Sbjct: 388 AGVAFYQRAEVRDVLQYLELINNPRNRPAFMRVVNTPLRGIGKTSQNRLMSYAEQHNMSY 447 Query: 468 EYIQKFANCGISKFQHVIKYIHELIHI------AQFCSPHDFFTLILGAKKGRQQFIS-- 519 A+ + + + A S + ++ +Q++S Sbjct: 448 LEAAAEADKVPKMSKRAAASLKAFSRMMSGFSLANSGSVANLIEDVVTQTDYCKQWLSNP 507 Query: 520 -RFGNEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQ-YPPTIKRAHSANHNEVRIM 575 + +DE ++ ++ + SL+ + + N +V +M Sbjct: 508 SEQDLQRQANVDELISAARNHDTIYDADTSLEGFLETTSLVSDLDALEQQNNNSGKVTLM 567 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVV++V + H+ Sbjct: 568 TLHAAKGLEFPVVYIVGVEQNLLPHERS-------------------------------- 595 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 ++ EE RL +VG+TRA QL + +S D + Sbjct: 596 LREGNPREYEEERRLFFVGITRAMQQLYVTSSRYRDLHGRSMPTIPSDFLS 646 >gi|298372853|ref|ZP_06982843.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str. F0058] gi|298275757|gb|EFI17308.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str. F0058] Length = 776 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 106/635 (16%), Positives = 188/635 (29%), Gaps = 123/635 (19%) Query: 95 DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-SLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 + ++ ++ I D M + + A Y ++ +DF+D++ Sbjct: 146 AVFNRISAMKNRLIASDDYRADSDMNRDDYHRGWQYFSEIFAAYCTRCRQANAMDFDDIL 205 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 ++T LLK I K IL+DE QDT++ Q +I L ++ Sbjct: 206 LHTYLLLKNNPD---ILAKYRNRFAFILVDEYQDTNIAQHRIINLLAKE----------H 252 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 R + VGD+ QSIYSF GA +L ++ + I +L ++RST +I+ Sbjct: 253 RRISVVGDDAQSIYSFRGANIDNILSFQKNFE--------GCRIFKLEENYRSTQNIVDA 304 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + + + S + + + + Sbjct: 305 ANSLIAKNRFQIPKRVYSNLP---------------------------KGDKIKVLSCFT 337 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 D A IA I S R DI VL R + + Sbjct: 338 DR--------NEAEVIADEIK---------SAAADRDAHYSDIAVLYRTNAQSRALEDAL 380 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 R + I IKD++A R +++ D S ++ P + + Sbjct: 381 R----NDNIPYRIYGGLSFYSRKEIKDVLAYMRLVINHLDAESLRRIINYPARTIGDKTV 436 Query: 454 FKICT-QRHETETVYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHDFFT 505 K+ + + I N K + + I L + + + Sbjct: 437 AKLIDLSSKHRISPLDCIFDIDNIPNDFNAGTRTKLKKFGELISNLTEVYRSSDAYSTAN 496 Query: 506 LILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISELEQ 556 I+ A ++ S E + + E LN + SL E +SE+ Sbjct: 497 AIITASGIMEELSSNDDIENVSRRENIHELLNAIHEYCEQKKSLGEDNPSLSEFLSEVSL 556 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + V +MT+H+AKGLE VF+ + Sbjct: 557 LTDQD-TDRDGQRDCVTLMTIHSAKGLEFAYVFVAGIEEDLLPSSM-------------- 601 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 + EE RLLYV +TRA + + Sbjct: 602 ---------------------CQTEYEIEEERRLLYVAITRAKRRCFLSYSKTRFRWGNV 640 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 + + D + + + Sbjct: 641 CYCSPSRFLSDIDEQYLDMPQAFAQYPDEAPSFER 675 >gi|157803783|ref|YP_001492332.1| DNA helicase II [Rickettsia canadensis str. McKiel] gi|157785046|gb|ABV73547.1| DNA helicase II [Rickettsia canadensis str. McKiel] Length = 661 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/554 (20%), Positives = 187/554 (33%), Gaps = 119/554 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 +AK + Y++ + LDF D ++ N+L K I + +ILIDE QD Sbjct: 180 RVAKLVYQEYQQNLLISNALDFGDFLLYNNELFIKNPD---ILKYYQDKYRYILIDEYQD 236 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+++Q+ R L + + + VGD+ QSIY + GAE +LR ++ Sbjct: 237 TNIVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGNILRFEKDF--- 283 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +II+L ++RST IL V + +N G + Sbjct: 284 -----SGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT------------------- 319 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW D + + + + + D AR IA I ++ D Sbjct: 320 --LW------TDRENGEKIKIVSCWSDKEE--------ARYIAGEIERLVREDR------ 357 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 A +I +LVR T + + + + I+D++A R Sbjct: 358 ---YNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERMEIRDVIAYIRI 410 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK----FQ 482 L+Q D+ + ++ P + KI + + + I+K G +K + Sbjct: 411 SLNQNDNFALERIVNVPKRAIGAATLSKIKAYAIEQNISHFAAIKKMLEKGKAKSYETLK 470 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + I +P + IL + E I+ ++E L Sbjct: 471 DFVTKIDNWHERFNTDAPINVVKAILHDSGYLEMLKEEQTEEAFGRIENINEMLRAIAEF 530 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQV 597 ++ +E ++ H V IMT+H AKGLE VVFL V Sbjct: 531 --------NDIHDFIEHSSLVMENESLETHYGGSVTIMTLHAAKGLEFDVVFLPGWEEGV 582 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + + EE R+ YVG+TR Sbjct: 583 FPSQKSLD--------------------------------EDGEKGLEEERRIAYVGITR 610 Query: 658 ASDQLIICKHSNTS 671 A L I + Sbjct: 611 AKKDLYITYAESRK 624 >gi|258510954|ref|YP_003184388.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477680|gb|ACV57999.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 705 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 116/643 (18%), Positives = 225/643 (34%), Gaps = 115/643 (17%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + + + ++ T + +S + L +A + Y + +DF+DLI +T LL Sbjct: 141 RSIKHRISQWKNEGATRVVNESNPSDL-IADRVMELYNKRLFAANAMDFDDLIGHTVRLL 199 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 ++ D +R K ++ H+L+DE QDT+ IQ+ ++R L R L AVG Sbjct: 200 EQNDD---LRDKYQEKFRHVLVDEYQDTNGIQFRLLRLLCA----------KHRNLCAVG 246 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D Q+IY++ GA+ + +LR +R I+ L ++RST +IL + V + Sbjct: 247 DADQAIYAWRGADSEHMLRFERDFP--------DAKIVVLTRNYRSTQEILDAANSVIAH 298 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + ST + + Sbjct: 299 NPRRRPKELRSTRGHGDKPLVVRLPDG--------------------------------- 325 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 + A +A I + + +D VL R + I + Sbjct: 326 --AAEAHYVAEAIEEHVRNGG----------RYEDCAVLYRANAQSRAIEEKL----LER 369 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQ 459 I D +KD++A R +++ +D++S + ++ P + + + + Sbjct: 370 AIPYTVVGGMTFYDRREVKDVLAYLRVLVNPQDEISLLRIINRPKRGLGDTAVDRLLEFA 429 Query: 460 RHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 E ++YE + + + + EL + + +F +L A + R Sbjct: 430 HAEGMSLYEALAHGEEAGLSERTAEAARQFHASLQELALWMEGMAVSEFLAEVLHATRYR 489 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + ++ E ++ +DE + T ++ ++ E ++E+ I + Sbjct: 490 EMYLESGKKEDLARVENIDELFSVTRSFDERRGGTVAEFLAEVSLLS-DIDKERDRGKGS 548 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 VR+MT+H +KGLE PVVFLV +F H + Sbjct: 549 VRLMTLHASKGLEFPVVFLVGMEEGLFPHARSMDDPL----------------------- 585 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE L YVG+TRA D+L++ + + ++ R + + + Sbjct: 586 -----------RIEEERNLCYVGLTRAMDRLVLTHAAWRTLYGQTVAREPSRFLAEIRED 634 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734 + H + L E + Sbjct: 635 LVVRVDLAEALEPEVLRPGDRVVHPQHGQGIVLSVESHAGEER 677 >gi|258647140|ref|ZP_05734609.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259] gi|260853104|gb|EEX72973.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259] Length = 794 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 115/800 (14%), Positives = 226/800 (28%), Gaps = 127/800 (15%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72 +++ + + +++M A+ L+ + FS+ + Sbjct: 54 ALTFTNKAAREMRERIAQLVEPAAVAMLWAGTFHSIFARILRIEHAALGLPSTFSIYDAA 113 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY--KMFKSTLASLTLA 130 + + P + + D + +M + LT Sbjct: 114 DAKSLVKSIIRELKLDDKIYRPGTVAARISDAKNHLMLPDEYAADVDRMNRDKRDGLTEL 173 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y E ++ LDF+DL++ T L I K ++ ++L+DE QDT+ Sbjct: 174 VRIYNIYIERCRQANALDFDDLLLRTYLLFHD---RPDICEKYVRKFRYVLVDEYQDTNA 230 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ +IR L L VGD+ QSIY+F GA+ +L + Sbjct: 231 VQYRIIRYLC----------PGEARLCVVGDDAQSIYAFRGADIGNILNFQTHYP----- 275 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST +I+ + + S +N + S G V + Sbjct: 276 ---SAKLIKLERNYRSTENIVQAANSIISRNKNRIPKTIYSEN---------GAGDKVCI 323 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +S ++ I + Sbjct: 324 ISAYTDKDES--------------------------AKVVKEIFKLRRQHH--------- 348 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 I + +L R + R + + IKD++A R + + Sbjct: 349 ISLDQVAILYRTNAQSRAFEDALR----NAALPYRVYGGLSFYQRKEIKDIIAYCRVVCN 404 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE-------YIQKFANCGISKFQ 482 +D+ + + ++ P + + K+ R E ++ + + K Sbjct: 405 PQDEEALLRIVNYPTRGIGQTTMSKLIAAARGNGEPLWSVLLAPDKFGVALNRRTLEKLY 464 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN 539 + I A +D + +L A Q+ E + + E LN Sbjct: 465 AFAELIRSFQARADVMGVYDLVSELLEASGITQELQGDRTPEGLSKWENIQELLNSIKGF 524 Query: 540 EQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E + + L L + T + + +V +MTVH AKGLE VF+ +F Sbjct: 525 ESEQETGVVLLADYLPQVVLLTDQDQQDDDEPKVTLMTVHAAKGLEFEAVFVTGLEDGLF 584 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 EE RL YV +TRA Sbjct: 585 PGT----------------------------------AAKYSARELEEERRLFYVAVTRA 610 Query: 659 SDQLIICKHSNTSNEKK----SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 I + ++ D + + + +A + Sbjct: 611 KAHCFITYAKTRYIYGRLEFCEPSLFLQEIDPQYVETDSSSARDFSSFGHLNNGRMAGLF 670 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTN 769 + P + + + Sbjct: 671 DAAKVDRKPAPSDFHSPTSSSFVADKAFSHRSSAFEADSSRTTVQQGRLRRLSQAATTVK 730 Query: 770 LESLLSDNQTFNRG-LIIHK 788 S++ G I+H+ Sbjct: 731 NTDAESESSGLQVGATILHE 750 >gi|254796825|ref|YP_003081662.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii str. Illinois] gi|254590070|gb|ACT69432.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii str. Illinois] Length = 905 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 179/850 (21%), Positives = 334/850 (39%), Gaps = 98/850 (11%) Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE-E 139 +K K L L ++ KI ++ + + S+ + E Sbjct: 151 KKTAENTTERKLHEMLASLLSNFHLDYRKIIEKLKNDPLEQLATESIDILSAFAEFLEIN 210 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 + +I ++ W Y+I +INHIL+DE QD +L QW +I +L Sbjct: 211 QNISKHYISHNGIIETAINM------EIWNAYEIVAKINHILLDEAQDNNLKQWYIISNL 264 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 DF + + ++ +++F VGD KQSIY F GA P L I ++R + K + Sbjct: 265 CRDFLIDE---TNNKSIFVVGDYKQSIYGFQGASPDIYLAFYDILKQR--DPQNKLVQVT 319 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 S+RS+A IL VD VF + L S+ I H ++R G ++L + Sbjct: 320 TAKSYRSSAAILRFVDSVFENVQ----LCTTSSEKICHNTNRAEAPGYIELIPLL----- 370 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 + + LA I TI N + + K R ++ DIL+L Sbjct: 371 ---------------QDREVDAELQLAISIRETIENWLKRSRML-KAKNRPVKGSDILIL 414 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 V R + + + I V +F + ++ + L+ LG+F++ + DD + + Sbjct: 415 VAHRTN---LVDHIYTQLSAVNIPVNFTGKFTVKNNPLFELLINLGKFLIYKHDDEALIT 471 Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499 +LKSP+F +S + + K+ ++ + + +A + K+ + + + Sbjct: 472 LLKSPIFAWSHNALLKLKAEKRKERLFEQICGTYAGKVLKKWLEL------------YGT 519 Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 D ++ +L A+ +G+E +D FL+ TL E + Sbjct: 520 TFDIYSRVLDARTVNT-LAKHYGSETPYYIDIFLDNTLEQECIHD------FVYIFSGED 572 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 + S N N V I TVH +KG +SP+VF+VD+ + + G P Sbjct: 573 ASLKIKSNNENGVTISTVHGSKGTQSPIVFIVDSNYVPQNRDIF--------FFTEDGTP 624 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 + ++ R +V ++ K+S + E+ RLLYV +TRA D+L I +K S Sbjct: 625 LLSSENHIR--VVQEIRNIKKESLRYEHLRLLYVALTRAEDELYIMGTGKQV-KKNSWYE 681 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET--IKQLMDEQ 737 + + D+ + + E +H + ER+ K + Q Sbjct: 682 ACSNGIVKIGSQDQDGAYYHTNDLLYPVEIKKKVDRSHENRSLLRERDSDCCKKNTQELQ 741 Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 L + K E S T + RG +IHK+L+ I + Sbjct: 742 NKESDLANSYKFPCKEDET---SENGIDDVTKVSEKTFQ---IVRGELIHKILEYISKVE 795 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857 + + + + + + +++ + ++ LE +E+ V C Sbjct: 796 KA--EEWTDLFLEEYSPELSSEQKNEIKKTVLLFLEKNR-----KAGGKNELEV-----C 843 Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 +++ R+D + + I I +YKT + I+ Q+ Y++ ++ YP Sbjct: 844 FDGELL---RMDNVKFEKDTITIRDYKTGK--DKNIDLAIEK---QMHRYKEAMQAIYPE 895 Query: 918 KSLVCLLIYV 927 K+++ +I++ Sbjct: 896 KNIITEIIWL 905 >gi|229822911|ref|ZP_04448981.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271] gi|229787724|gb|EEP23838.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271] Length = 1311 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 120/698 (17%), Positives = 238/698 (34%), Gaps = 51/698 (7%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + + + + + + + ++ + Q LQ Q + + F+ Sbjct: 235 ASLSHAQHLLEQALAG----LESLTDAMISKLQPLLEAERSQVQALQTVLTNQDLAQVFA 290 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125 + + +K +E+ ++ L+++ K+ + ++ ++ A Sbjct: 291 HFQKIAFDRWPSGKKAEEDKELLEQVKALRDQAKEQIERVRQLMVLDYDTTVYVEGQAGA 350 Query: 126 ----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV------SAWIRYKIDQ 175 L +AK +D+ DL T D+L D + Sbjct: 351 SIQDLAHLTLEFRQALWQAKVAQNCIDYNDLEHLTLDILAPYDADLGQRQPSEAALYYQD 410 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 +L+DE QD + IQ ++ L+ + + LF VGD KQSIY F AEP Sbjct: 411 LFREVLVDEYQDINDIQATILSFLSRERRQDLSG-----NLFMVGDVKQSIYGFRMAEPS 465 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 L + + Q+ G+ +I L ++RS +IL + VF + Sbjct: 466 LFLAKYQAYQE-----GKGGHLIVLDANYRSRDEILQFTNFVFQRLMDPGFGEMQYGAME 520 Query: 296 RHR----SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 + S E ++ + + + E + + S + A I Sbjct: 521 SLKTGNHSFLPAPPDPKFDIEFLLYESSAADEGEPEDQELDLEQGVETSLEA-EAWLIGR 579 Query: 352 TISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + + G++R + +D ++L R + + L I ++ + Sbjct: 580 DIQARVQAGWQIYDKELGQQRPVTYQDFVILSSTRHPFQPVKQVFEQL----GIPLLSQN 635 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 I+ ++AL + I + D+ V +L+S S++ + +I + + + YE Sbjct: 636 VENYFQRQEIRLMLALLKLIDNPHQDIPLVAILRSHFVGLSDEQLSQIRIRVPSSGSFYE 695 Query: 469 YIQKFA-------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520 Q+ + + + E +AQ + Sbjct: 696 ACQQVLLIEEASLVALQETLGNFMGKLKEWRQLAQRVDLVTLIWTLYQETYFLDYVAGLD 755 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575 G++ L F + E +Y L + +EQ S + N VR+M Sbjct: 756 QGDQRQANLHAFYERVVEFEAGNYKGLTAFVGFIEQIMAHDQDLAEPLLLSEDQNFVRVM 815 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 TVH +KGLE P V+L+ TG + K Q + + I + Sbjct: 816 TVHASKGLEFPFVYLMQTGKRFNIQDTQKVYVPSKRYGLGLDYLDIKHQLQYPSFIKEAI 875 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + + E R LYV +TR +L+I + ++ Sbjct: 876 KLERRGQLKSEEMRKLYVALTRCEQKLVIVGSVKSQDQ 913 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 45/343 (13%), Positives = 92/343 (26%), Gaps = 53/343 (15%) Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV L + ++ V E I+ Sbjct: 966 EQVRLTYVAEAELLPLLKASTSRPWLQDDQNWLADLKLTVDQHEVTSEVGAFIQSLLESQ 1025 Query: 706 KDEWIAYEWSTHHP--------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 D +A + S++ E E+ Q L + E Sbjct: 1026 YDYGLASKTSSYQSVSELKRLYEEPHNEKLSHFTDRRPGQISWDWLTQEDEERAEESETG 1085 Query: 758 NPSTI-------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP---------EHKR 801 + I DT G H ++Q + Sbjct: 1086 QKAGIQSIRFTGDTFQAPRFVRERQAYTAAQIGTFTHYVMQQLDFSALEGLDVSDYPAAI 1145 Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP- 858 + ++ E L SI + L + + + + + E + S ++ Sbjct: 1146 QEQAQAWLAAGFMEASQWEAVKLA-SICQFLASDLGQVLIKQAKSLHCEQAFSYRLPAAK 1204 Query: 859 ---------------KKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVP-------QEIEH 895 +++ G +D + + + +YKT + P +I+ Sbjct: 1205 LFARQLGADQLQELADSQLLVHGVVDNYLNLPDGRLILIDYKTDRYRPWANLTKSAQIDQ 1264 Query: 896 IPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIPQ 937 I + Q+S+Y + L K++ L+ + +V + Sbjct: 1265 IVDKYRFQMSLYARALS-LAKGKAVTDVYLVLLDFDQVVPVTD 1306 >gi|225627865|ref|ZP_03785902.1| DNA helicase II [Brucella ceti str. Cudo] gi|254710455|ref|ZP_05172266.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis B2/94] gi|254714448|ref|ZP_05176259.1| ATP-dependent DNA helicase pcrA [Brucella ceti M644/93/1] gi|254717346|ref|ZP_05179157.1| ATP-dependent DNA helicase pcrA [Brucella ceti M13/05/1] gi|256031949|ref|ZP_05445563.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis M292/94/1] gi|256061471|ref|ZP_05451615.1| ATP-dependent DNA helicase pcrA [Brucella neotomae 5K33] gi|256160148|ref|ZP_05457842.1| ATP-dependent DNA helicase pcrA [Brucella ceti M490/95/1] gi|256255354|ref|ZP_05460890.1| ATP-dependent DNA helicase pcrA [Brucella ceti B1/94] gi|260169086|ref|ZP_05755897.1| ATP-dependent DNA helicase pcrA [Brucella sp. F5/99] gi|261219176|ref|ZP_05933457.1| UvrD/REP helicase [Brucella ceti M13/05/1] gi|261222555|ref|ZP_05936836.1| UvrD/REP helicase [Brucella ceti B1/94] gi|261318026|ref|ZP_05957223.1| UvrD/REP helicase [Brucella pinnipedialis B2/94] gi|261322237|ref|ZP_05961434.1| UvrD/REP helicase [Brucella ceti M644/93/1] gi|261325477|ref|ZP_05964674.1| UvrD/REP helicase [Brucella neotomae 5K33] gi|261758591|ref|ZP_06002300.1| UvrD/REP helicase [Brucella sp. F5/99] gi|265989057|ref|ZP_06101614.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1] gi|265998520|ref|ZP_06111077.1| UvrD/REP helicase [Brucella ceti M490/95/1] gi|294852740|ref|ZP_06793413.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL 07-0026] gi|225617870|gb|EEH14915.1| DNA helicase II [Brucella ceti str. Cudo] gi|260921139|gb|EEX87792.1| UvrD/REP helicase [Brucella ceti B1/94] gi|260924265|gb|EEX90833.1| UvrD/REP helicase [Brucella ceti M13/05/1] gi|261294927|gb|EEX98423.1| UvrD/REP helicase [Brucella ceti M644/93/1] gi|261297249|gb|EEY00746.1| UvrD/REP helicase [Brucella pinnipedialis B2/94] gi|261301457|gb|EEY04954.1| UvrD/REP helicase [Brucella neotomae 5K33] gi|261738575|gb|EEY26571.1| UvrD/REP helicase [Brucella sp. F5/99] gi|262553144|gb|EEZ08978.1| UvrD/REP helicase [Brucella ceti M490/95/1] gi|264661254|gb|EEZ31515.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1] gi|294821329|gb|EFG38328.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL 07-0026] Length = 858 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|315077282|gb|EFT49344.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA2] Length = 810 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + LDF+DLI+ T +L++ +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKGF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + + I + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|329121403|ref|ZP_08250028.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister micraerophilus DSM 19965] gi|327469693|gb|EGF15160.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister micraerophilus DSM 19965] Length = 1285 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 132/674 (19%), Positives = 234/674 (34%), Gaps = 61/674 (9%) Query: 36 SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL--------TQKFTPQK-NIIT 86 ++ T+ ++ + + +E ++ TQ P+ I Sbjct: 249 EKALMNYTETLSEELAAISILCNAKTWKEWHETINEITFRSLKPVKKTQAENPEALEIYK 308 Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKK 143 I ++K+KLK+ + I + K + + Y + K+K Sbjct: 309 TTILSTRKNIKDKLKEIAAMYFAIDETRWIEEMKKTCPTIEILSKITTEFYNEYLKRKQK 368 Query: 144 NCVLDFEDLIINTNDLL---------KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 ++F D ++L K+ + ++ ++ I+IDE QDT+ IQ Sbjct: 369 ESTMEFSDTTHYALNILIKKHKLENGKQEIELSEAAKELQKKYKEIMIDEYQDTNSIQEL 428 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 + + S+ R LF VGD KQSIY F A+ L + K Sbjct: 429 ITTLI-----------SNGRNLFMVGDLKQSIYRFRMADHTIFLDKYSTFTKDENAKN-- 475 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV------GTV 308 +I L +FRS +L+ ++ +F N + L + R+ + G Sbjct: 476 -RLIVLNKNFRSDHALLSSINYIFRQIMNPEILELSYNDDEALHAGRLQETPPDTYIGNK 534 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--SNG 366 + ++ +++ ++ S E+ IA I N+I + +G Sbjct: 535 EHGSVSINIINNKELEEKISDQDKSQIENGETEII----YIAEEIKNIINNELTVTNPDG 590 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 R + KDI +L R L + N+Y I + D K L AL Sbjct: 591 TYRKAEYKDIAILARS---LSKKASLFLKIFNEYNIPAATQNDDNFLDATETKILRALLE 647 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISK 480 I + DL V +L+S N E + KI ++E ET+ + + K Sbjct: 648 IIDNPYRDLPLVAVLRSYFANMDETEFAKIAIAKNELKTQTWWETLPLTEKYVSEKTFEK 707 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539 + I+ + + S + IL G ++ F L Sbjct: 708 IKKFIEKYNNWKDYSLNNSISELLQRILEETGYMTYISGLAEGTFRKSHIENFYKLALDF 767 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 ++ + L + LE+ + N V+IMT+H +KGLE P+VFLV+ Sbjct: 768 DEKEKNGLYRFLYMLEKLTEEGRTPEGKSIKTETNAVQIMTIHKSKGLEYPIVFLVNCNK 827 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + ++ + + +S + E RLLYV M Sbjct: 828 TFNETDYKPSYITHKTMGLGLHYYSKEHTAHWPTLYWYATKEDSIRSNKAEEARLLYVAM 887 Query: 656 TRASDQLIICKHSN 669 TRA D+L I + Sbjct: 888 TRAKDKLYITGTTK 901 Score = 115 bits (286), Expect = 6e-23, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 22/193 (11%) Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP---EHKRKNFITSY------CTKNA 813 + + + + G ++HK ++++ E + IT + Sbjct: 1094 EFRAEPEFMQENKPITGTSYGTLMHKTMELLPFEKLENETEITTEITKLKNNNSITDEEY 1153 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK--------KDIII 864 ++ K + + I +++P+ + + E+ S + + I + Sbjct: 1154 EILTQKGKHSPVTKIMTFIKSPLGSELKNASEIKKEMPFSILLPADDFYKNCEKGEKIFM 1213 Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 G ID + + I I +YKT + E + + QL IY K + + Sbjct: 1214 QGIIDCMFETDGKITIIDYKTDKT--KNEEKLINHYKTQLQIYANAASKIL-KKEIKNIY 1270 Query: 925 IY-VSEPKVFIIP 936 I+ S K +P Sbjct: 1271 IWSFSMGKAIKVP 1283 >gi|254689608|ref|ZP_05152862.1| DNA helicase II [Brucella abortus bv. 6 str. 870] gi|254694098|ref|ZP_05155926.1| DNA helicase II [Brucella abortus bv. 3 str. Tulya] gi|256257857|ref|ZP_05463393.1| DNA helicase II [Brucella abortus bv. 9 str. C68] gi|260755135|ref|ZP_05867483.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|260884147|ref|ZP_05895761.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|261214396|ref|ZP_05928677.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya] gi|297248693|ref|ZP_06932411.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus bv. 5 str. B3196] gi|260675243|gb|EEX62064.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|260873675|gb|EEX80744.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|260916003|gb|EEX82864.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya] gi|297175862|gb|EFH35209.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus bv. 5 str. B3196] Length = 858 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|319955254|ref|YP_004166521.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237] gi|319423914|gb|ADV51023.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237] Length = 794 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 127/728 (17%), Positives = 241/728 (33%), Gaps = 134/728 (18%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEA 140 K + + K ++ ++ ++ I +R FN ++ ++ + + +Y + Sbjct: 144 KEMGLDKDVYKYKQVQNRISSYKNSLITVRAYFNDAELQEADAMAKRPRMGDIYQNYVDR 203 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 K +DF+DL++ TN+LL K + K +IL+DE QDT+ Q+ +I++L+ Sbjct: 204 CFKAGAMDFDDLLLRTNELLNKFPE---VLAKYQDRFRYILVDEYQDTNHSQYLIIKALS 260 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + F + + VGD+ QSIYSF GA +L ++ + L Sbjct: 261 DKF----------QNICVVGDDAQSIYSFRGANISNILNFQKDYDN--------VVMYRL 302 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST +I+ + + + N +W D+ Sbjct: 303 EQNYRSTRNIVNAANSIIAKNTNQLEKV---------------------VW------TDN 335 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 P + S D+ R +A +IF N + + VL Sbjct: 336 DDGPAIKVHRSTTDAEEG--------RFVA---------GSIFENRMQHQMSNGSFAVLY 378 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + I R I IKD++ R +++ +D+ + + Sbjct: 379 RTNSQSRAIEDALR----KRDIPYRIYGGLSFYQRKEIKDVLYYLRLVINPKDEEALKRV 434 Query: 441 LKSPLFNFSEDDIFKICTQRHET--------ETVYEYIQKFANCGISKFQHVIKYIHELI 492 + P + K+ + E + K K I Sbjct: 435 INFPARGIGMSTLDKLTVAANHYGRSIFEVIENLDRINLKINAGTKRKLVDFTNMIKGFQ 494 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSS 546 + + + + + +F E +D ++E LN ++ + Sbjct: 495 IMNETVNAFEISEHVTKKTGILLEFKKDGTPEGIARMDNIEELLNGIKDFVEGQKEVVDA 554 Query: 547 LQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 + LE T + + + V +MT+H AKGLE P V++V +F Sbjct: 555 TGNISEFLEDVALATDLDNDTGDDDRVALMTIHLAKGLEFPHVYIVGMEEDLFPSGMS-- 612 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 +S EE RL YV +TRA Q + Sbjct: 613 --------------------------------MSTRSELEEERRLFYVAITRAEKQAYLT 640 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 N W ++ K ++ + Y + + + E Sbjct: 641 YTQNR--------YRWGKLIDAEPSRFLEEIDEKYIENLTPIDNPGYRYKSMIDTDIFGE 692 Query: 726 REET-IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------LESLLSDNQ 778 +++ ++Q+ IP P +N + + L P G TN E L ++ Sbjct: 693 VDKSRLRQIKPTSGIPPSTAKPNENQLRKLRKLKPELAQPIGNTNTVDPNLAEGSLINHT 752 Query: 779 TFNRGLII 786 F RG ++ Sbjct: 753 RFGRGTVV 760 >gi|242310501|ref|ZP_04809656.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489] gi|239522899|gb|EEQ62765.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489] Length = 702 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 99/607 (16%), Positives = 198/607 (32%), Gaps = 126/607 (20%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEE 139 + T++I K+ L E + ++ + + + +Y+E Sbjct: 115 DSDDTKKIIKELNAELAPLPLVVSEISRYKNSQISPQEASKNAHNEIYKHIAKVYENYQE 174 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 + +N ++DF+DL++ + + + +I Q+ +I++DE QDT+ +Q+++++ L Sbjct: 175 SLLQNNMVDFDDLLLLPIQIFQNH---KEVATEISQKYQYIMVDEYQDTNDLQYQLLKYL 231 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 ++ + L VGD+ QSIYS+ GA + +L + Q I+ Sbjct: 232 C----------TTHQNLCVVGDDDQSIYSWRGANIQNILNFSKHFQN--------AKTIK 273 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L ++RS+ IL + + + + G + ST Sbjct: 274 LEENYRSSKHILRAANNLITNNKERLGKTLKSTL-------------------------- 307 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 + FD + R + I N++ I KDI +L Sbjct: 308 --GEGKPIEILHSFDEQEE-------VRNLCKIIKNLLSNG----------INPKDIAIL 348 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 R + + N I + + IKD+++ R +++ DD S + Sbjct: 349 FRLNALSRSLEEGF----NREGIPYILVGAIRFYERSEIKDVISYFRVLINLNDDFSLLR 404 Query: 440 MLKSPLFNFSEDDIFK-----------ICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 +L P + I K I ++ + + + + Sbjct: 405 ILNKPKRGIGKTTIEKLKNLTQIHLCSIYELFAHPHLQESLQKEIGKKAHTTIKDFFEIL 464 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSY-SS 546 +L + S F F+ + + ++EF + + Sbjct: 465 KDLQE-SHKQSSLRFLDDFEEKIGLCNAFLQNNDEIDRVSNIEEFYGLYREYIKQNPLME 523 Query: 547 LQELISELEQYPPTIKRAHSANHNEV---RIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L++ ++EL V M+VH++KGLE VF++ F Sbjct: 524 LEDFLNELALRSDQEDMEMRQEKKGVEGISCMSVHSSKGLEFDYVFIIGLEEGFFPMVR- 582 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + S +E RL YV TRA +L Sbjct: 583 ------------------------------------EDSNIQEERRLGYVAFTRAKKELY 606 Query: 664 ICKHSNT 670 + + Sbjct: 607 LSYVDSR 613 >gi|189499756|ref|YP_001959226.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] gi|189495197|gb|ACE03745.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] Length = 735 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 116/626 (18%), Positives = 205/626 (32%), Gaps = 123/626 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y ++N LDF+DL+I +L +++ + ++ +I+IDE QDT+ Sbjct: 170 AAGIYEVYARRLRENNALDFDDLLIKPLELFQEQPA---VLEQLQDYFRYIMIDEYQDTN 226 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ V +SL R +F VGD+ QSIYS+ GA+ +L + Sbjct: 227 RAQYLVAKSLAA----------VHRNIFVVGDDAQSIYSWRGADITNILNFQDDYP---- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 S +L ++RST IL + + S Sbjct: 273 ----DVSAFKLVENYRSTQTILQAANGIIKRNSRQIEKELVSH----------------- 311 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 Q + + F+ + A ++ I ++ + Sbjct: 312 -----------QSTGEPLTLLESFNEKRE-------AEKVGENIQSL---------KLVK 344 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 +D V R + ++ + R +I IKD +A RFI Sbjct: 345 GYDYRDFAVFYRTNAQSRVLEDIFR----IQRIPYRIFGSVSFYKRKEIKDAVAYLRFIR 400 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS-----KFQH 483 + +D S + ++ P E I K+ + +VYE I K G Q Sbjct: 401 NDQDTESLLRIINFPPRKIGEVSIGKLRDYAASQGISVYEAILKAEEAGFPARLKNALQG 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I +L HIA S +D + + + E + L E L+ Sbjct: 461 FSVVIEQLKHIAVDGSVYDVLSSLYESTGITSLLKDENTPESMARHENLQELLSMARDFS 520 Query: 541 QNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ SL E ++ + T + N V +MTVH AKGLE PVVF+ ++F Sbjct: 521 DHNPEANSLDEFLNGISLA--TDYNEVQESDNYVSLMTVHAAKGLEFPVVFITGLEERLF 578 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + + EE RL YV +TRA Sbjct: 579 P------------------------------------LNYYETDELEEERRLFYVAVTRA 602 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 ++ + + + N + F ++ + + Sbjct: 603 QQKVFLSWS-----KSRYNYGQPQTCLRSMFIDEIDSSILVTEGGGEHEPGSGRSAGREG 657 Query: 719 PENTPLEREETIKQLMDEQKIPKKLF 744 N+ + + + + PK+ Sbjct: 658 FSNSRPAVPDFVSGRRERENRPKEAS 683 >gi|257869252|ref|ZP_05648905.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2] gi|257803416|gb|EEV32238.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2] Length = 750 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 113/755 (14%), Positives = 236/755 (31%), Gaps = 142/755 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L + Sbjct: 35 GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVNQLLGSGGEDVWVST 94 Query: 66 FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110 F + L + + Q ++ + + + + D K+ + Sbjct: 95 FHSMCVRILRRDVDQIGYSRNFTIIDTSEQNTLMKRVLKELNIDPKKYDPRSILGAISNA 154 Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T +++ SL + A Y++ + N +DF+DLI+NT L K+ + + Sbjct: 155 KNELLTPADYENQQGSLFEQIVGRCYALYQKELRNNQCMDFDDLIMNTIRLFKENEDA-- 212 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 ++ ++I +DE QDT+ Q+ ++ L + F + L VGD QSIY Sbjct: 213 -LQFYQRKFHYIHVDEYQDTNHAQYTLVNLLADRF----------KNLCVVGDADQSIYG 261 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ ++I L ++RST IL ++V N + Sbjct: 262 WRGANMQNILDFEKDYP--------DAAVILLEQNYRSTQTILNAANQVIKNNRNRPDKN 313 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW ++ ++ + S AR Sbjct: 314 ---------------------LW-------TENSAGEKITYY-------RGDSERDEARF 338 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I + I + + D VL R + +I + + Sbjct: 339 IVSEMQKQIAD---------KGRKFGDFAVLYRTNAQSRVIEEML----LKANVPYTMVG 385 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY 467 D I+D++A I + D LS ++ P + K+ ++ Sbjct: 386 GRKFYDRKEIRDILAYLSAIANPSDSLSLERIINVPKRGIGATSVEKLREFASLHEWSLL 445 Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + + + + + + S + IL +Q I++ Sbjct: 446 EAAMNVDLANISGKAGKELGSFGMMMDQFAQMIPYLSVTELTKEILDKTGYKQDLINQNN 505 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSS-----------LQELISELEQYPPTIKRAHSAN 568 E ++ L+EFL T ++ + L +++L ++ Sbjct: 506 LESQSRLENLEEFLTVTQEFDKRFEAQNEDDADAPEEKLTVFLNDLALLSDVDSYEEESS 565 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 V +MT+H AKGLE PVVFL+ +F Sbjct: 566 Q--VTLMTLHAAKGLEFPVVFLIGLEENIFPLSRALMEESELEEERRL------------ 611 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 YVG+TRA ++L + + + ++ V + Sbjct: 612 ----------------------AYVGITRAEEELFLTNAFSRTLYGRTQYNRPSRFVEEI 649 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 + + + + + + + Sbjct: 650 EQDLLQSLGERTQPKGAAASFQPKVFKPTYTQPRQ 684 >gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis K85] gi|289538010|gb|EFD42588.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis K85] Length = 694 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 108/684 (15%), Positives = 190/684 (27%), Gaps = 136/684 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + L ++ Sbjct: 79 AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + + + Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L N P L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL+ + V + + Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + I+D++A R Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + A Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ EL + +L R++ + + +D L+E ++ Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542 Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581 + L LE+ H V +MT+HTAK Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF+ +F H Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629 Query: 642 STQEEYNRLLYVGMTRASDQLIIC 665 E RL YVG+TRA +L + Sbjct: 630 -ELSEERRLAYVGITRARQRLYVS 652 >gi|209364296|ref|YP_001425453.2| DNA-dependent helicase II [Coxiella burnetii Dugway 5J108-111] gi|207082229|gb|ABS78395.2| DNA helicase II [Coxiella burnetii Dugway 5J108-111] Length = 723 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YE+ +++ ++DF L+ SA +R Q HIL+DE QDT+ IQ Sbjct: 177 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +++L + V AVGD+ QSIYS+ GA+ + + R Sbjct: 234 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST IL + V +N G LW Sbjct: 276 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + F+ + A + I + Sbjct: 314 ------TDSRTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 350 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D+ +L R + L D +I + IKD +A R + ++ Sbjct: 351 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ P + + T R ++++ Q ++ QH I Sbjct: 407 DDAAFERVVNVPTRGIGNTTLVVLRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542 + + L + + +L + G ++ L+E +N T + Sbjct: 467 ELVDRLQDETKNLPLAEQTEKMLMGSGLLDLYKKDNSEKGLSRVENLEELINATSQFTPT 526 Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +L L + L ++ H + V +MT+H AKGLE P+V + +F H+ Sbjct: 527 DDLALSPLDAFLSHVALETGEEQASAHSDCVSLMTLHAAKGLEFPLVIISGLEEDLFPHR 586 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YVGMTRA ++ Sbjct: 587 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 612 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 LI+ + + + + Sbjct: 613 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 651 >gi|237785085|ref|YP_002905790.1| putative ATP-dependent DNA helicase II [Corynebacterium kroppenstedtii DSM 44385] gi|237757997|gb|ACR17247.1| putative ATP-dependent DNA helicase II [Corynebacterium kroppenstedtii DSM 44385] Length = 870 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 97/753 (12%), Positives = 214/753 (28%), Gaps = 125/753 (16%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + P+ + + + L ++ Sbjct: 80 AATEMKERVADLIGPIAERMWVSTFHSMCVRILRAQAN---LIPGLNTNFTIYDSDDSRR 136 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL+ K ++ + +LK +L+ + + N + Sbjct: 137 LLTMIARDMNLDL-KRFASRTVASAISNLKNELRTPDEALADAEEDKNPFN--------- 186 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + A Y++ + + +DF+DLI + ++ + + H+L+DE QD Sbjct: 187 ETVAQIFAEYQKRLRASNAVDFDDLIGEVVRIFREYPE---VALYYRRRFRHVLVDEYQD 243 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++ +L D + P L VGD QSIY+F GA + + +R Sbjct: 244 TNHAQYVLVSTLVGDEGS-EGDSIPPSELCVVGDADQSIYAFRGATIRNIEEFERDYPH- 301 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL+ + V S + + Sbjct: 302 -------AETILLEQNYRSTQTILSAANAVISQNSGRREKN------------------- 335 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + ++ + + AR +A I ++ T Sbjct: 336 --LWTAL-------GEGERIVGYVADNEHDE-------ARFVAREIDQLVDNST------ 373 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I DI V R + + + + + I+D++A + Sbjct: 374 ---INYGDIAVFYRTNNASRALEDIF----IRNGLPYKVVGGTRFYERKEIRDIIAYLKV 426 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKF----- 481 + + +D +S ++ +P + + ++ ++ A+ I Sbjct: 427 LDNPDDSVSLRRIINTPRRGIGNRALSLLSLYAADHGVSMGAALRAAADGDIPALGSRGN 486 Query: 482 ---QHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFISRFGNE- 524 ++ + L ++ + + Sbjct: 487 KAVGRFVEMMDGLREDTADNQLVSHDGDDLGIPDLGAIVNDVIERSGYLESLEGSNDPQD 546 Query: 525 --VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 +D L E ++ + L + A + + + V V ++ Sbjct: 547 GARLDNLRELVSVAREFASEAAHQLAYERMPSATASESAPGAGAEDGSSVGSDGVDSSGT 606 Query: 583 LE--------------------------SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 V LV Q+ ++ + Sbjct: 607 DSGGGIDTAGDEAFLEEGEPQPGSLQAFLERVSLVSDADQIPDEENGVITLMTLHTAKGL 666 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 P+ + + S E RL YVG+TRA +L I + + + Sbjct: 667 EFPVVFLTGW-EDGQFPHMRALGDPSELSEERRLAYVGITRAQRRLYISRAVTRGSWGQP 725 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 + + + ++ + S + +W Sbjct: 726 VNNPASRFIAEIPEDLIHWEREEPQQSWDSGDW 758 >gi|110835551|ref|YP_694410.1| DNA helicase II [Alcanivorax borkumensis SK2] gi|110648662|emb|CAL18138.1| DNA helicase II [Alcanivorax borkumensis SK2] Length = 720 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 119/722 (16%), Positives = 231/722 (31%), Gaps = 132/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + + L S Sbjct: 31 GAGSGKTRVLVHRIAWQIATEQASPFGILAVTFTNKAAAEMRGRIEQLLDMSADGMWVGT 90 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINKK-SPDLKEKLKKSQDE-----FIKI 110 F + L Q F + K+ S +L ++ Sbjct: 91 FHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSKELGLDEQRWPARQATWFINSQ 150 Query: 111 RDRFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 +D + + L + + YEEA ++ ++DF ++++ +L + D + Sbjct: 151 KDEGLRARHMDTGGDLFALTMQKIYFAYEEACERGGLVDFNEMLLRVLELFRDND---NL 207 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 R + HIL+DE QDT+ IQ+ +R L ++ + VGD+ QSIY + Sbjct: 208 RGHYQRRFRHILVDEFQDTNSIQYAWLRLLADE----------NNAVTIVGDDDQSIYGW 257 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + R I L ++RST IL + V + G Sbjct: 258 RGAKIENIHKFSRDFP--------DTRTIRLEQNYRSTGTILKAANAVIGHNSDRLGK-- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + S F+ + + AR I Sbjct: 308 -------------------ELW-------TEGGDGDLIRLYSGFNEVDE-------ARFI 334 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 A + + T +++ VL R + ++ I Sbjct: 335 AGRMDKLFQEGTA----------RREMAVLYRSNAQSRVLEEAF----LQAGIPYRIYGG 380 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + + IK+ +A R + + D +F ++ +P + + R ++++ Sbjct: 381 QRFFERVEIKNALAYLRLLSHRHADAAFERVVNTPTRGIGNKTLETLREVARQRNVSLWD 440 Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFIS 519 Q + + + + I +L S + ++ A + + Sbjct: 441 AAQAVVSEQLLTARAINALAVFLNLIAQLEQQCDGLSLAETTEHVIEASGLLEFHGKEKG 500 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G + ++ L E L+ T S L L + L+ + A+ + V++MT+ Sbjct: 501 EKGQQRLENLRELLSATREFGDEDEDSELDSLTAFLDHAALESGEGQADAHEDAVQMMTL 560 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVF+ +F HK + Sbjct: 561 HSAKGLEFPVVFITGMEEGLFPHKMSSEEPG----------------------------- 591 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 E RL YVG+TRA +L + + N + + + Sbjct: 592 -----RLAEERRLCYVGLTRAMRELYLTHAESRRLYGNENYNPPSRFLREIPAETLEEVR 646 Query: 698 IK 699 + Sbjct: 647 AR 648 >gi|317165456|gb|ADV08997.1| hypothetical protein NGTW08_2046 [Neisseria gonorrhoeae TCDC-NG08107] Length = 735 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 101/584 (17%), Positives = 194/584 (33%), Gaps = 118/584 (20%) Query: 99 KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158 L+ Q ++ + + + A Y++ ++ V+DF +L++ + + Sbjct: 142 ALRSLQGFINAQKESGLRASVLSAPDPHTSRMIECYAEYDKICQREGVVDFAELMLRSYE 201 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 +L+ ++ +R NHIL+DE QDT+ +Q+ ++ + +FA Sbjct: 202 MLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFA 248 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 249 VGDDDQSIYRFRGAHVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVI 300 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + G + + D++ + ++++ D Sbjct: 301 ENNDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE- 332 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 A+ I + +I VL R + +I Sbjct: 333 -------AQFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----F 371 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 I + IK +A R ++ +DD + + ++ P + + T Sbjct: 372 RSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQT 431 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 +E A +K ++ I L + + IL + + Sbjct: 432 ASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRNQVGQMHLSEIIVGILKDSGLTEHYR 491 Query: 519 SRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRA 564 ++ G + +D LDE +N + E +++ +L E +++ L + Sbjct: 492 TQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQ 551 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 A V++MTVH AKGLE VFL F + Sbjct: 552 AGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL-------------------- 591 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 --------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|260887265|ref|ZP_05898528.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] gi|260863327|gb|EEX77827.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] Length = 766 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/753 (14%), Positives = 218/753 (28%), Gaps = 137/753 (18%) Query: 34 YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP----QKNIITQEI 89 + ++ + F + FL ++ +KN + + Sbjct: 65 LAITFTNKAAAEMRERVDRMIGGLGKDVWLSTFHSFCARFLRREIEAGEVYKKNFVIYDT 124 Query: 90 NKKSPDLKEKLKKS------------QDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNA 135 + +K LK+ Q+ ++ + + + L + Sbjct: 125 SDSKTVIKACLKELNLDDKQFAPAKVQNAISNAKNLMLGPRAYARQADTFHAKKIAELFS 184 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y++ ++N L D + + + +R K + +ILIDE QDT+ Q+ + Sbjct: 185 LYDKKLRENNAL---DFDDLLLLAVDLLENNDELRQKYQRRFRYILIDEYQDTNGAQYRL 241 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 L L VGD QSIY + GA+ +L ++ + Sbjct: 242 TTLLAG----------GHHNLCVVGDADQSIYGWRGADISNILNFEKDFPE--------A 283 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 I+L ++RST +IL + V EN + LW Sbjct: 284 KTIKLEQNYRSTKNILAAANAVIRNNENRKPKK---------------------LW---- 318 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 ++ + D + AR + T+ + D Sbjct: 319 ---TENAVGEKIALYQANDERDE-------ARFVVDTVQK---------QKTLFSVDYGD 359 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I VL R + ++ I D + IKD++A + + D + Sbjct: 360 IAVLYRTNAQSRVLEEAM----MTAGIPYTMVGGLKFYDRMEIKDIIAYLHVLYNPFDTV 415 Query: 436 SFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE--------YIQKFANCGISKFQHVIK 486 S + ++ P I K+ +++++ F + + Sbjct: 416 SLLRIINVPKRGIGTSTIAKLTEYAAMREDSLFDVLSSPEALEAMGFKTRTKNLLEAFAA 475 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-N 542 + +L+ F +L + + E + L EF+ E+ Sbjct: 476 LLFDLMGKLAAMPLSSFIEALLDDTGYIKDLEKQDTPEAQTRIENLREFVGVAREFEKTE 535 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 +L+ ++++ + V +MT+H+AKGLE PVVFLV +F H Sbjct: 536 EEPTLENFLNQIALVSDVDTANME--DDRVTLMTLHSAKGLEFPVVFLVGMEEGIFPHAR 593 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 EE R YVG+TRA +L Sbjct: 594 TLLEPS----------------------------------EIEEERRTCYVGITRAERKL 619 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 + + K N + + + ++ + + Sbjct: 620 YLSYARYRTLYGKGNVYPPSRFLAEIPETYLEKAQAFGRSAFLESR-GMGRPQSAFEILQ 678 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 L+R + P + P Sbjct: 679 SLQRTTAPSASPSPVPSSPREVRPATSAAIRPS 711 >gi|330838978|ref|YP_004413558.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] gi|329746742|gb|AEC00099.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] Length = 755 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/753 (14%), Positives = 218/753 (28%), Gaps = 137/753 (18%) Query: 34 YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP----QKNIITQEI 89 + ++ + F + FL ++ +KN + + Sbjct: 54 LAITFTNKAAAEMRERVDRMIGGLGKDVWLSTFHSFCARFLRREIEAGEVYKKNFVIYDT 113 Query: 90 NKKSPDLKEKLKKS------------QDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNA 135 + +K LK+ Q+ ++ + + + L + Sbjct: 114 SDSKTVIKACLKELNLDDKQFAPAKVQNAISNAKNLMLGPRAYARQADTFHAKKIAELFS 173 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y++ ++N L D + + + +R K + +ILIDE QDT+ Q+ + Sbjct: 174 LYDKKLRENNAL---DFDDLLLLAVDLLENNDELRQKYQRRFRYILIDEYQDTNGAQYRL 230 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 L L VGD QSIY + GA+ +L ++ + Sbjct: 231 TTLLAG----------GHHNLCVVGDADQSIYGWRGADISNILNFEKDFPE--------A 272 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 I+L ++RST +IL + V EN + LW Sbjct: 273 KTIKLEQNYRSTKNILAAANAVIRNNENRKPKK---------------------LW---- 307 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 ++ + D + AR + T+ + D Sbjct: 308 ---TENAVGEKIALYQANDERDE-------ARFVVDTVQK---------QKTLFSVDYGD 348 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I VL R + ++ I D + IKD++A + + D + Sbjct: 349 IAVLYRTNAQSRVLEEAM----MTAGIPYTMVGGLKFYDRMEIKDIIAYLHVLYNPFDTV 404 Query: 436 SFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE--------YIQKFANCGISKFQHVIK 486 S + ++ P I K+ +++++ F + + Sbjct: 405 SLLRIINVPKRGIGTSTIAKLTEYAAMREDSLFDVLSSPEALEAMGFKTRTKNLLEAFAA 464 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-N 542 + +L+ F +L + + E + L EF+ E+ Sbjct: 465 LLFDLMGKLAAMPLSSFIEALLDDTGYIKDLEKQDTPEAQTRIENLREFVGVAREFEKTE 524 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 +L+ ++++ + V +MT+H+AKGLE PVVFLV +F H Sbjct: 525 EEPTLENFLNQIALVSDVDTANME--DDRVTLMTLHSAKGLEFPVVFLVGMEEGIFPHAR 582 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 EE R YVG+TRA +L Sbjct: 583 TLLEPS----------------------------------EIEEERRTCYVGITRAERKL 608 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 + + K N + + + ++ + + Sbjct: 609 YLSYARYRTLYGKGNVYPPSRFLAEIPETYLEKAQAFGRSAFLESR-GMGRPQSAFEILQ 667 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 L+R + P + P Sbjct: 668 SLQRTTAPSASPSPVPSSPREVRPATSAAIRPS 700 >gi|317052675|ref|YP_004113791.1| UvrD/REP helicase [Desulfurispirillum indicum S5] gi|316947759|gb|ADU67235.1| UvrD/REP helicase [Desulfurispirillum indicum S5] Length = 1123 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 154/965 (15%), Positives = 300/965 (31%), Gaps = 134/965 (13%) Query: 24 PYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER----FSLLSSFFLTQKFT 79 + + L+ + SQ E + LSS LTQK T Sbjct: 229 AGLDEATVASLAELAAYAASNLDENHPLARIDWSQGLGFEAAYTGAWIALSSLLLTQKGT 288 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 +++ N P K L + + ++ +L + A Y++ Sbjct: 289 WRRSFTK---NDGFPPPKNALIPA---IKALLQELAASPQAENLCWALQALALIPATYDD 342 Query: 140 -------------AKK---------KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 K ++ +DF + + + L D + K+D + Sbjct: 343 DQWPVLHAINELLLKAVGHLWLVFGRSGCVDFSQMSLAAVEGLGSDDEPTDLALKLDYRL 402 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 NHIL+DE QDTS Q+ ++R LT + G RTLF VGD QSIY F AE Sbjct: 403 NHILVDEFQDTSASQYRLLRKLTAGWQPGDG-----RTLFVVGDPMQSIYRFRQAEVGLF 457 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 L+ ++ + + L ++FRSTA I+ +++FS A Sbjct: 458 LQARQQ-----GIGNVQLEPLSLSVNFRSTAAIVHWNNQIFSRVFPAVEEISSGAIAYSA 512 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 S+ G+ Q ++ + AR I I ++ Sbjct: 513 SSAFHGEAEGPDCAVQAHLLPTAKAQEE--------------------ARAILACIEDIR 552 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + I +L R R L S D L A Sbjct: 553 SRHPG-----------ETIAILARNRTHL----DEIISLLKGGATSFSAIDIAPLAHSGA 597 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-- 475 ++DL + R + D ++++ +L++P + D+ + T+++ +Q+ Sbjct: 598 VRDLQIITRALCHPGDSIAWLALLRAPWCGLTLADLQLLTAGAD-GRTLWQCLQEATCVE 656 Query: 476 ----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531 G ++ + + + + + G E V Sbjct: 657 PLSADGQARLLRIRPALIQAMEERGRQGLARWVEGTWRQLGGPAFLERPAQLEDARV--- 713 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 FL+ E+ + +Q + L + + +++MT+H AKGLE V + Sbjct: 714 FLHILHSLEEEPFPEIQHMEEALASV---YCSEDPSADSSLQLMTIHKAKGLEFDHVIIP 770 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPI----WIPQSKSRNNIVSDLIKHLKKSTQEEY 647 S + + + +++ + + ++ + E Sbjct: 771 GLCGGSRSESKPLLAWHEGPHRSADMELLLAIARRGRDQKESSLYEYIRQMHQRCMENEQ 830 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RLLYV TRA L + + + + L ++ + Sbjct: 831 KRLLYVACTRARKGLHLFARLRPDRSGEDWASPRSGSLLRHIWEQLQPLAPPLPDAPEAE 890 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 E + P + + + +P +P ++D EP Sbjct: 891 E----QQQAQPPVPLKRVHSDWQIPRVAPRILPNLAITPAQHDEGEPQP----------- 935 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK----RKNFITSYC--TKNAKLWPAKEY 821 E + G++ H+ ++ + E + + + P + Sbjct: 936 ---EFQWAGEMARLVGVLFHQWVRRLGEKNERESLSGDMEELRKNLRWSTYQLGVPHELR 992 Query: 822 KNLLLSITRLLE----NPMMTTAMS---CDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874 +++ L + +S DS E ++G ++ I++ ID++ I Sbjct: 993 ASVVERTITALGNMGVDQRGRWILSSSHQDSRWEYPLTGT---DQRGHIVNIIIDRMFID 1049 Query: 875 Q-QNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 +I +YKT H +E + QL Y + P + L + Sbjct: 1050 DQGTRWIIDYKTGQHEGGGLEHFLREEQQRYAPQLERYGFLAGKLGPQ-PVRLGLYFPFH 1108 Query: 930 PKVFI 934 + Sbjct: 1109 QRFVE 1113 >gi|212213503|ref|YP_002304439.1| DNA-dependent helicase II [Coxiella burnetii CbuG_Q212] gi|215919328|ref|NP_821025.2| DNA-dependent helicase II [Coxiella burnetii RSA 493] gi|206584213|gb|AAO91539.2| DNA helicase II [Coxiella burnetii RSA 493] gi|212011913|gb|ACJ19294.1| DNA helicase II [Coxiella burnetii CbuG_Q212] Length = 723 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YE+ +++ ++DF L+ SA +R Q HIL+DE QDT+ IQ Sbjct: 177 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +++L + V AVGD+ QSIYS+ GA+ + + R Sbjct: 234 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST IL + V +N G LW Sbjct: 276 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + F+ + A + I + Sbjct: 314 ------TDSRTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 350 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D+ +L R + L D +I + IKD +A R + ++ Sbjct: 351 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ P + + T R ++++ Q ++ QH I Sbjct: 407 DDAAFERVVNVPTRGIGNTTLVALRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542 + + L + + +L + G ++ L+E +N T + Sbjct: 467 ELVDRLQDETKNLPLAEQTEKMLMGSGLLALYKKDNSEKGLSRVENLEELINATSQFTPT 526 Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +L L + L ++ H + V +MT+H AKGLE P+V + +F H+ Sbjct: 527 DDLALSPLDAFLSHVALETGEEQASAHSDCVSLMTLHAAKGLEFPLVIISGLEEDLFPHR 586 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YVGMTRA ++ Sbjct: 587 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 612 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 LI+ + + + + Sbjct: 613 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 651 >gi|23502284|ref|NP_698411.1| DNA helicase II [Brucella suis 1330] gi|161619361|ref|YP_001593248.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365] gi|254704671|ref|ZP_05166499.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 3 str. 686] gi|260566081|ref|ZP_05836551.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|261755364|ref|ZP_05999073.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686] gi|23348259|gb|AAN30326.1| DNA helicase II [Brucella suis 1330] gi|161336172|gb|ABX62477.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365] gi|260155599|gb|EEW90679.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|261745117|gb|EEY33043.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686] Length = 858 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEVP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|260577850|ref|ZP_05845783.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734] gi|258604009|gb|EEW17253.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734] Length = 950 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 105/759 (13%), Positives = 208/759 (27%), Gaps = 180/759 (23%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P S + + + A L ++ Sbjct: 191 AAAEMRERVVDMVGPQAERMWVSTFHSFCVRVLRANAH----LAPGLNTNFSIYDSDDS- 245 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L + + K + + + K +L + + N + +T Sbjct: 246 KRLMTMIIKDASLDLKEFSPRGVLNVISNWKNELVGPAGALEEAQRDSNPHTAQIAT--- 302 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L Y+ + +DF+DLI +L +R + HI++DE Q Sbjct: 303 ------LYKTYQNRLRAANAVDFDDLIGEVVAILNNNPD---VREHYRRRFRHIMVDEYQ 353 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+E++ +L L VGD QSIY+F GA + + +R Sbjct: 354 DTNHAQYELVAALAGKGKA-------ECELCVVGDADQSIYAFRGATIRNIEEFERDYP- 405 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I L ++RST IL+ + V + + Sbjct: 406 -------DAHTILLEQNYRSTQKILSAANAVIDRNQGRRPKK------------------ 440 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + + + A I I +++ + Sbjct: 441 ---LW-------TDLGDGELIGGYVADNEHDE-------ANFIVEQIDDLVDNE------ 477 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 DI ++ R + I + + + I+D++A + Sbjct: 478 ---GYSYGDISIMYRTNNASRAIEDVL----VRSGMPYKVVGGTRFYERREIRDIVAYLK 530 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK--------FANCG 477 + + +D ++ ++ +P + I ++ + + + G Sbjct: 531 VLDNADDTVALRRIINTPRRGIGDKAIAQVTVHAEGQGIGFSAALGDAAAGKVAGLSARG 590 Query: 478 ISKFQHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFISRFGNE 524 + ++ + L + + +L ++ + Sbjct: 591 RNSIGKFLEMMDALRAETESMEMTASDGSGLGLPDLGRVISAVLDMTGYKELLEKSNDPQ 650 Query: 525 ---VIDVLDEFLNFTLRNEQNS-------------------------------------- 543 +D L+E ++ Q S Sbjct: 651 DGARLDNLNELVSVGHEFSQESANLKAYEEMPGGGTAGSAGSSDGSAGDTADAMLTEGEA 710 Query: 544 -YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 SLQ + + + + V +MT+HTAKGLE PVVFL F H Sbjct: 711 PLGSLQAFLERVSLVADADQIPADE-QDMVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMR 769 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 E RL YVG+TRA +L Sbjct: 770 ALGDPT----------------------------------ELAEERRLAYVGITRAKQRL 795 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 + + S + + + + + Sbjct: 796 FLTRAITRSGWGAPVNNPPSRFLSEVPEDLMEWIREEPA 834 >gi|313835931|gb|EFS73645.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA2] gi|314927226|gb|EFS91057.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL044PA1] gi|314970659|gb|EFT14757.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA3] gi|328906126|gb|EGG25901.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. P08] Length = 810 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 99/601 (16%), Positives = 190/601 (31%), Gaps = 128/601 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + A Y+ + LDF+DLI+ T LL++ +R + + H+L+DE QDT+ Sbjct: 208 EVYAEYQRRLRAANALDFDDLIMCTVTLLRQFPE---VREQYRRRFRHVLVDEYQDTNTA 264 Query: 192 QWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 Q++ IR L D P L VGD QSIY+F GA + +L ++ Sbjct: 265 QYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNILDFEKDFP--- 321 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 I L ++RST IL+ + + + + + Sbjct: 322 -----GARTILLEQNYRSTQTILSAANNLIKMNPSRPVKN-------------------- 356 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW Q + + + A +A I ++ Sbjct: 357 -LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT------ 395 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + V R + + + + ++D ++ R I Sbjct: 396 ---SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSYLRAI 448 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKF 481 + DD+S +L +P + + +E +++ A +++ Sbjct: 449 ANPSDDVSLRRILNTPRRGIGTRAEAAVEMFATARRISFWEALKRIDEIDALATRSVNQI 508 Query: 482 QHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 + + + + I + + + + IL + + + ++ L E + Sbjct: 509 RAFVSLMDDHIAMVEQGKRADEIASSILKESGYIAELENSKDPQDETRLENLIELASVAQ 568 Query: 538 RN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E + SL + ++ + + ++ V +MT+ Sbjct: 569 EFVARVHTVDIEEAEQDTVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVTLMTL 627 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 HTAKGLE VF+ VF H Sbjct: 628 HTAKGLEFDTVFITGFEDGVFPHMRSL--------------------------------- 654 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 + E RL YVG+TRA QL + + S + ++ V + ++ Sbjct: 655 -ADATELSEERRLAYVGITRARKQLFLSRASVRTMWGEAQYNPPSRFVDEIPPRLIDWER 713 Query: 698 I 698 I Sbjct: 714 I 714 >gi|28572258|ref|NP_789038.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27] gi|28410389|emb|CAD66775.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27] Length = 743 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 100/588 (17%), Positives = 191/588 (32%), Gaps = 114/588 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 ++ Y+E K+ DF+DLI T LL+K I ++L+DE QD Sbjct: 181 QFILHVFRRYQEILKEANAFDFDDLISETVFLLQKSPE---ISAMYRNRWKYLLVDEYQD 237 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +I LT+ + L AVGD QSIY+F GA+ ++ + Sbjct: 238 TNHAQYRLILELTKGDKSDMS-------LTAVGDSDQSIYAFRGADIANIVNFENDFP-- 288 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RS +IL + + S +N + + Sbjct: 289 ------DCHTILLEQNYRSCQNILLAANALISNNQNRKDKN------------------- 323 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ ++ + + R +A + +++ Sbjct: 324 --LWSEL-------GAGEKVVAYCASSAEEEG-------RFVADRVRHLVDQGESL---- 363 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 DI V R + I I + IKD++A Sbjct: 364 ------SDIAVFYRSNTQSRAIEESL----IRQSIPYRVVGGTKFYERAEIKDILAYLTV 413 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF-ANCGISKFQHVI 485 I++ +D L+ +L P ++ T+ + + + + + Sbjct: 414 IVNPDDTLALRRILNVPKRGVGTVSENRLVEFASARGITLMQALSRIDEINIQPSAKSAL 473 Query: 486 KYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNE 540 + + L++ ++ +L A +F + + + +F++ Sbjct: 474 RDLFYLLNRFAGSSMPANELLDDLLKATDLLSRFNNTDDPQNEARKINIGDFVDSVEDFA 533 Query: 541 QNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + L + ++ + T ++ +MT+H AKGLE VFL + Sbjct: 534 KENPGGTLSDFMTNIALM--TSYDQSDDAPGQITLMTLHMAKGLEFDFVFLTGLEEGILP 591 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H+ K +K+ EE RL YVGMTRA Sbjct: 592 HEMSLK----------------------------------EKNGIEEERRLAYVGMTRAK 617 Query: 660 DQLII---CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 L + ++ + R W ++ R + T + Sbjct: 618 KVLHLSFSSYRKRYTDGVRLPSRFWDEIPQHLLRWHSRFTHKRFTGPL 665 >gi|302343284|ref|YP_003807813.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] gi|301639897|gb|ADK85219.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] Length = 1159 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 138/982 (14%), Positives = 281/982 (28%), Gaps = 104/982 (10%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 + + P S L+ KA+ Q + E++ L Sbjct: 189 AELIDAGPKALASMDQAARDLATALAAVAPKNKAKPPQYFNDLTAFLEQWPELRPKLAQS 248 Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST----LASLTLAKY 132 + ++ ++ E++ ++ + M L + Sbjct: 249 EPDLATAMLAHKMLGGDRGKDERIVNARAILKNEATKIAQAAMAPLAGGLADDLFVLQER 308 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L+ + L F+D L+ + + +++DE QD + +Q Sbjct: 309 LSQAVATECARLAALSFDD---LLLGALRLLRQRPELLPALRGRFRALMVDEFQDVNPVQ 365 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ L + L VGD KQSIY+F GA+ + + G Sbjct: 366 GALVGLLCG--LGSDDPGPDAPLLLIVGDRKQSIYAFRGADVSLYNQTMADFE-----GG 418 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + L +FRS ++ +++F +H Sbjct: 419 GPGVLAALRRNFRSDPRLVEFFNRLFDQVFAQG-------KNRQHAPHAYVDFRDDDRQR 471 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + D P E D E + A +A ++ ++ ++ Sbjct: 472 PGRAAGDFSGGPALELLHCGGDDQNAEQRRAREATALAAHLAGLVAGGQ---------VR 522 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 I +L+RK + R + + D++ R +L + Sbjct: 523 PGQIAILLRKLTAVRVYEEALR----RQDLDFCTVKGKGFFGCQEVADVVMAMRALLWPD 578 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV------YEYIQKFANCGISKFQHVIK 486 DDL+ +L+SPL S++ + + + + + + Sbjct: 579 DDLAVTALLRSPLVGLSDESLLAMAHHGPQLKPSQALAQGRALPDWLPTEQHERLSMARR 638 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS 545 + +L A+ +P + T ++ A Q G + L + + + + Sbjct: 639 LLADLGPRARRMTPAELITAVIEAGDYMQVLAGLPSGEQKAANLRKLIETAREYDDGVEA 698 Query: 546 SLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 L+ L++ L Q P + + + + VRIMT+H AKGL+ PVV L D Q Sbjct: 699 CLRRLMAMLAQDPGDAQAPLAGDDGQIVRIMTIHQAKGLQFPVVVLADLAGQAGGGPRAL 758 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 + + P + + I L + + E RL YV TRA ++L++ Sbjct: 759 -VGPDQNGVISPRPIDFASGQRLETAIHQRLSQRATAIEEAESARLFYVACTRAQERLVL 817 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 C + + + + + +A + P Sbjct: 818 CMSAGKRPGP---------WQKWADAFIAGDELASHVDLGVVGDAVADAPALGPAAAWPD 868 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL---------- 774 L +E ++ + + S ++ L Sbjct: 869 YLPAEAGPLAEEGRMLAQRCLIRPALGPAAVRASVSAVEDFWACPRRFFLTQRLGLDTAL 928 Query: 775 ----------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824 Q G + H LLQ + +T K Sbjct: 929 LPGMGGTGGDDPAQAARLGSLAHMLLQQVDLAAGAAGLELLTESLLAAGK-ADGGLLTQA 987 Query: 825 LLSITRLLEN---PMMTTAMSCDSYSEVSVSG--KINCPKKDIIISGRIDQIS-ISQQNI 878 L + + C + E + + G D ++ + Sbjct: 988 SLMAGHFFQTDLAAALAQLPPCTVFREQPFLLCLPGQGGGPGLELRGEFDLLAPMEDGRW 1047 Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL------KDSYPNKSL-------VCLLI 925 I +YK + P + Q+ IY L + P +++ L Sbjct: 1048 LIVDYKVGRRLD------PAKYHGQMLIYAAALWSGGKDQAMAPPRAVLAHLGPERAALH 1101 Query: 926 YVSEPKVFIIPQNKLNKAFAEI 947 Y+ +L++A ++ Sbjct: 1102 YL------EFTAAQLDQALEDL 1117 >gi|70733445|ref|YP_263220.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf-5] gi|68347744|gb|AAY95350.1| DNA helicase II [Pseudomonas fluorescens Pf-5] Length = 727 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 116/641 (18%), Positives = 211/641 (32%), Gaps = 124/641 (19%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + LS F Q+ ++ + I + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S L + + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYEAACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 HPG---LLAHYQKRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + + Sbjct: 252 DQSIYGWRGAKIENIHQYSADFP--------DTEVIRLEQNYRSTAGILKAANALIANNT 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDGGDGEAINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T + DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E +++ I+ I L H ++ Sbjct: 435 SDVSMWEAMRQLVANKGLTGRAAGALGAFIELIENLAAKTLEMPLHLMTQTVIEQSGLIA 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570 + G ++ L+E ++ E L L + L + + Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARNFENTEEDEDLTPLAAFLGHASLEAGDTQADEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SVQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA L++ Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVMTYAETRR 621 >gi|33152168|ref|NP_873521.1| DNA-dependent helicase II [Haemophilus ducreyi 35000HP] gi|33148390|gb|AAP95910.1| DNA helicase II [Haemophilus ducreyi 35000HP] Length = 729 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 106/549 (19%), Positives = 186/549 (33%), Gaps = 117/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + +LDF +L+I +L K V I + ILIDE QDT+ I Sbjct: 176 QIYQIYQEACDRAGLLDFAELLIRAYELFKNNRV---ILERYQHRFQQILIDEFQDTNHI 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I+ L + VGD+ QSIY + GA+ + + R + ++ Sbjct: 233 QYDLIQLLAG----------KTGNVVIVGDDDQSIYGWRGAQVENIQRFLQDYRQ----- 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ + + G + LW Sbjct: 278 ---AQTIRLEQNYRSTGHILASANQLIANNNDRLGKN---------------------LW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + F+ L + AR +A I Sbjct: 314 -------TDKGDGDPVDIYCAFNELDE-------ARFVASQIKQWKEEQGSL-------- 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + +I I + IKD +A R I ++ Sbjct: 352 --NDCAILYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLISNR 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHV 484 +DD +F ++ +P + + + R T+++ Q + S Sbjct: 406 DDDAAFERVINTPPRGIGDRTLEGLRQLTRSRQVTLWQAVQIAIQEQHLSARAASALLRF 465 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I+ L S + ++ + + G + I+ L E + T + Sbjct: 466 VELINALEQETTQMSLCEQTDFVIKTSGLYEMYKQEKGEKGEVRIENLAELVTATKEFCK 525 Query: 542 NSYS-SLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L +L + L ++ + + V +MT+H AKGLE P VF+V +F Sbjct: 526 PDDAIELSDLTAFLTHASLEAGENQASLHQDYVELMTLHAAKGLEFPRVFIVGMEEGLFP 585 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 +P E RL YVG+TRA Sbjct: 586 SGISFDEGRLP-----------------------------------EERRLAYVGITRAK 610 Query: 660 DQLIICKHS 668 +L I Sbjct: 611 QRLTISYAE 619 >gi|325955681|ref|YP_004239341.1| UvrD/REP helicase [Weeksella virosa DSM 16922] gi|323438299|gb|ADX68763.1| UvrD/REP helicase [Weeksella virosa DSM 16922] Length = 772 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 100/622 (16%), Positives = 197/622 (31%), Gaps = 125/622 (20%) Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKS-TLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152 + ++ + ++ I +R FN ++ ++ T A + Y + K+ +DF+DL Sbjct: 138 KQVLNRISQFKNNLITVRAYFNNPQLIEADTEAMKPRMGDIYKAYVDRCYKSGAMDFDDL 197 Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212 ++ TN++L + K +I++DE QDT+ Q+ ++++L + Sbjct: 198 LLRTNEILT---CFPEVLAKYQDRFRYIMVDEYQDTNHSQYLIVKALASRYE-------- 246 Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272 + VGD+ QSIY+F GA + +L ++ + L ++RST I+ Sbjct: 247 --NVCVVGDDAQSIYAFRGANIRNILSFQKDYP--------DAKVFPLEQNYRSTKIIVG 296 Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332 +++ + ++ + +W D++ + + + Sbjct: 297 AANQLIAHNQDQLKKN---------------------VW------TDNEEGDKITVYRAL 329 Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 D+ AR IA I F + D +L R + + Sbjct: 330 SDADE--------ARYIASRI---------FETQMSEQLPLSDFAILYRTNAQSRALEEA 372 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R I IKD+++ R +++Q D+ + + ++ P + Sbjct: 373 LR----KKGIPYRVFGGISFYQRKEIKDMVSYMRLLINQNDEEALLRVINYPARGIGQTT 428 Query: 453 IFKICTQRH----------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 I K+ + E Y +K I + Q ++ Sbjct: 429 INKLLLAANQYNIHIFQLLENIQFYAPNISINTATANKLNDFAVMIKRFQLMLQTHDVYE 488 Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISE 553 + + K E ++ + E LN ++ SL + Sbjct: 489 VTMELAKSTKFLSTLKEDDTPEGISRLENVQELLNSIQGYVDEQKQLEDGDPSLAGFLEN 548 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V +MTVH AKGLE P VF+ +F Sbjct: 549 IALATDADTDNDDTEK--VSLMTVHLAKGLEFPHVFIAGLEENLFPSMMNLNT------- 599 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + EE RL YV +TRA + + Sbjct: 600 ---------------------------RQDLEEERRLFYVALTRAEKNAYLTYSVSRFRW 632 Query: 674 KKSNQRTWYDMVYDSFHNDERV 695 K + + N + Sbjct: 633 GKIIDSEPSRFLEEIDDNHLQW 654 >gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104] gi|118167335|gb|ABK68232.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104] Length = 774 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 111/749 (14%), Positives = 207/749 (27%), Gaps = 141/749 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + + + L ++ Sbjct: 77 AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRR 133 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + D + Sbjct: 134 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPAAAVANLTDD---------SDELS 183 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 184 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 240 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L P L VGD QSIY+F GA + + +R Sbjct: 241 TNHAQYVLVRELVG---TDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 295 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I L ++RST +IL+ + V + + Sbjct: 296 ------DATTILLEQNYRSTQNILSAANSVIARNSGRRDKR------------------- 330 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 331 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAQKGE------ 368 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + I + I+D++A R Sbjct: 369 ---ITYNDVAVFYRTNNSSRSFEEVF----IRAGIPYKVVGGVRFYERKEIRDIIAYLRV 421 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIK 486 + + D +S +L +P + + + + + + A + + Sbjct: 422 LDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAE 481 Query: 487 Y-------IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + + D +L R++ S + +D L+E ++ Sbjct: 482 KAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELVSVA 541 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRA--------------------HSANHNEVRIMT 576 ++ L L+ V +MT Sbjct: 542 HEF-STDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMT 600 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +HTAKGLE PVVF+ +F H + Sbjct: 601 LHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPV---------------------------- 632 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 E RL YVG+TRA +L + + S+ + + + + Sbjct: 633 ------ELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPESRFLREIPQELIEWR 686 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725 + S + A + T T Sbjct: 687 RTAPAPSFSAPVSGAGRFGTPRAAPTRAA 715 >gi|309379347|emb|CBX22120.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 735 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 97/583 (16%), Positives = 188/583 (32%), Gaps = 120/583 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ + V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICHREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + +FAVG Sbjct: 204 QSNEI---LRRHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNTA----------VFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR I I + +I VL R + +I Sbjct: 333 -----ARFIVDEIKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ- 459 I + IK +A R ++ +DD + + ++ P + + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + + ++++ ++ I L + + IL + + + Sbjct: 434 QEQGVSLWQAACNTGAKAAKV-AAFVRLIEALRNQVGQMPLPEIIAGILKDSGLTEYYQT 492 Query: 520 RFG--NEVIDVLDEFLNFTLRN-----------EQNSYSSLQELISELEQYPPTI-KRAH 565 + G + +D LDE +N + + S +++ L + Sbjct: 493 QKGDNQDRLDNLDELVNAAVEFKPEDSNFGIMPDNISDDPAFPILAFLSNAALESGENQA 552 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 A V++MTVH AKGLE VFL F + Sbjct: 553 GAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL--------------------- 591 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 -------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|163843668|ref|YP_001628072.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445] gi|163674391|gb|ABY38502.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445] Length = 858 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 194/694 (27%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ + L + L VGD Sbjct: 269 AQYLWLHLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|262276890|ref|ZP_06054683.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114] gi|262223993|gb|EEY74452.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114] Length = 742 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 113/607 (18%), Positives = 203/607 (33%), Gaps = 123/607 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y++ +DF DLI++ +LKK + I + +IL+DE QDT+ Sbjct: 170 ALKVYKIYQKKLLVMNCVDFGDLILHVVTILKKFEDIKKI---YQRNFKYILVDEFQDTN 226 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q ++ LT + + + VGD+ QSIYS+ GAE K +L K Q Sbjct: 227 YVQNFWLQLLTSE----------KKNICVVGDDDQSIYSWRGAEVKNILEFKNNYQN--- 273 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 I+L ++RST +IL + S E+ + Sbjct: 274 -----TQTIKLEQNYRSTENILNSATSLISNNEDRLEKN--------------------- 307 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W ++ + ++ SYFD + + A ++ I + + Sbjct: 308 IWSEL-------GDGEKVKIKSYFDGISE-------ATGVSDIIEQNLS----------K 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + +I +LVR T + + IKD + R I Sbjct: 344 KFKLNEISILVRAAFQTREFEERF----IKIGLPYRIIGGLKFYERSEIKDALGYLRLIN 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQ 482 DD+SF ++ +P + + I KI R + ++++ ++ I K + Sbjct: 400 QSSDDISFERIINNPKRSIGDSSIKKIHDFAREKDLSLFDASKEILKENILKPKTIQNLK 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 + + + ++L + E + L E + Sbjct: 460 SFLVNMISWKQKCKDIDHISLLEIVLDESGYSSMLKNERTPEADARLENLKELKSSMKNY 519 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 L LE + ++ IMT+H+AKGLE VFL +F Sbjct: 520 --------SSLNEFLENISLQTAIDEEWDGEKINIMTIHSAKGLEFDAVFLPGWEEGLFP 571 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H+ I EE RL YV +TRA Sbjct: 572 HQKS--------------------------------IDEKGADGIEEERRLAYVAITRAK 599 Query: 660 DQLIICKHSNTSNEKKSNQRTWYD---MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 +L I + + N + D++ KI + +S + +++ Sbjct: 600 KELFISFANQRKFYGRQNDNYDFYSSLQSRFIDEIDDKYTKISIDDSTEDEFIFDQDFNI 659 Query: 717 HHPENTP 723 +N+P Sbjct: 660 EGKKNSP 666 >gi|291327137|ref|ZP_06127128.2| DNA helicase II [Providencia rettgeri DSM 1131] gi|291311697|gb|EFE52150.1| DNA helicase II [Providencia rettgeri DSM 1131] Length = 723 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 114/694 (16%), Positives = 220/694 (31%), Gaps = 132/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + S + + + L S+ Sbjct: 33 GAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINQLIGTSEGGMWIGT 92 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L Q ++ + + + ++ LK + + R Sbjct: 93 FHGLAHRLLRQHYMDANLPQDFQILDSDDQYRLIRRLLKAMNLDEKQWPPRQGMWYINGK 152 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + Y+EA + ++DF +L++ ++L + + Sbjct: 153 KDEGLRPQHIEAYGNPVEATWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 209 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + +IL+DE QDT+ IQ+ IR L + + VGD+ QSIY + Sbjct: 210 LQHYRERFTNILVDEFQDTNNIQYAWIRVLAGE----------TGKVMIVGDDDQSIYGW 259 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R I L ++RST +IL + + + + G + Sbjct: 260 RGAQVENIQRFLNDFP--------GAETIRLEQNYRSTNNILKAANALIANNSDRLGKN- 310 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + S F+ L + AR + Sbjct: 311 --------------------LW-------TEGGDGEPISLYCAFNELDE-------ARYV 336 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I +D +L R + ++ + Sbjct: 337 VGRIKQWHENGGAL----------QDCAMLYRSNAQSRVLEEAL----IQGAMPYRIYGG 382 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD ++ R I ++ DD SF ++ +P + + + R + T++E Sbjct: 383 QRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGDRTLDTVRQTARDQQLTLWE 442 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + ++ + L Q H ++ R + G Sbjct: 443 SCEYLLREQVLGGRAAAAIERFLELVDALAKETQDMPLHVQADRVINDSGLRAMYEQEKG 502 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + + L+E +N T Q+ L L + L + + V++MT+ Sbjct: 503 EKAQARIENLEELVNATRDFSYQDEDQDLMPLQAFLSHAALEAGDGQADVSQDAVQLMTL 562 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVF+V +F + Sbjct: 563 HSAKGLEFPVVFIVGMEEGMFPSQMSMDESG----------------------------- 593 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA ++L I + Sbjct: 594 -----RLEEERRLAYVGITRAMEKLTITYAESRR 622 >gi|316985163|gb|EFV64115.1| DNA helicase II [Neisseria meningitidis H44/76] gi|325141072|gb|EGC63575.1| DNA helicase II [Neisseria meningitidis CU385] gi|325199439|gb|ADY94894.1| DNA helicase II [Neisseria meningitidis H44/76] Length = 735 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 102/582 (17%), Positives = 193/582 (33%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + + +FAVG Sbjct: 204 QNNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR I + +I VL R + +I Sbjct: 333 -----ARFILDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P + + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E A +K ++ I L + S + IL + + ++ Sbjct: 434 NEQGITLWQAACNAGAKAAKVVAFVRLIEALRNQVGQLSLSEIIVGILKDSGLTEHYRTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ L E +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPENISDDPAFPILAFLSNAALESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH AKGLE VFL F + Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|312881427|ref|ZP_07741222.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122] gi|309370909|gb|EFP98366.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122] Length = 724 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ +LL+ IR HIL+DE QDT+ I Sbjct: 173 QLYRAYQEACDRAGLVDFAEILLRAQELLRDN---KHIRQHYQTRFKHILVDEFQDTNNI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 230 QYAWLRLMAGPDTH----------VMIVGDDDQSIYGWRGAKVENIEKFTVEFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 274 --SVNTIRLEQNYRSTKTILDASNALIANNTERMGK---------------------ELW 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I + Sbjct: 311 -------TDGSAGEPISVYSAYNELDE-------ARFAVSKIKEWQEKGGVL-------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R + ++ Sbjct: 349 --TDTAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P + + I R T+++ Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTLWKASTSLLEEQVLPGRAAGALGRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 I+ +H L + S H ++ + + G + I+ L+E + T + E+ Sbjct: 463 IELVHALEDDTKEMSLHQQTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 523 PEEAEDMPLLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608 Query: 660 DQLIICKHS 668 ++L I Sbjct: 609 EKLYITYAE 617 >gi|304389059|ref|ZP_07371104.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC 13091] gi|304336989|gb|EFM03178.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC 13091] Length = 735 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 S + IL + + ++ G + +D LDE +N + E +++ L E Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|148978468|ref|ZP_01814942.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3] gi|145962375|gb|EDK27655.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3] Length = 724 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 100/548 (18%), Positives = 186/548 (33%), Gaps = 116/548 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + + Y+EA + ++DF ++++ +++LL+ IR HIL+DE QDT+ IQ Sbjct: 174 IYSAYQEACDRAGLVDFAEILLRSHELLRD---KKHIREHYQARFKHILVDEFQDTNNIQ 230 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R + + VGD+ QSIY + GA+ + + + Sbjct: 231 YAWLRMMAG----------PDCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFP------- 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 S I L ++RST IL +++ S G +LW Sbjct: 274 -GASTIRLEQNYRSTKTILQASNELISNNTERMGK---------------------ELW- 310 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S S ++ L + AR I Sbjct: 311 ------TDGNDGEPISVYSAYNELDE-------ARFTVSKIKEWQEKGGALE-------- 349 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ + + IKD ++ R + ++ Sbjct: 350 --DTAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMGNRN 403 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + I R T+++ I Sbjct: 404 DDAAFERVVNTPTRGLGDKTLETIRFAARDRGATMWQASIALLEEQVLPGRAAGALSRFI 463 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L + H+ ++ + + G + I+ L+E + T + E+ Sbjct: 464 ELINALEDDTLELNLHEQTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKP 523 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 524 EEADEMSMLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPS 583 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + EE RL YVGMTRA + Sbjct: 584 QMS----------------------------------AEEAGRLEEERRLCYVGMTRAME 609 Query: 661 QLIICKHS 668 +L I Sbjct: 610 KLYITYAE 617 >gi|295133070|ref|YP_003583746.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia profunda SM-A87] gi|294981085|gb|ADF51550.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia profunda SM-A87] Length = 773 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 107/644 (16%), Positives = 207/644 (32%), Gaps = 128/644 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + K +DF+DL++ TN+LL + + K +IL+DE QDT+ Sbjct: 177 DIYQEYVQRCFKAGAMDFDDLLLKTNELLNRFPE---VLQKYQNRFRYILVDEYQDTNHS 233 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++++L++ F + + VGD+ QSIY+F GA +L ++ Sbjct: 234 QYLIVKALSDKF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYD------ 277 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + L ++RST +I+ + + + + Sbjct: 278 --GVEMYRLEQNYRSTGNIVNAANSIIDKNQTKLDKVVWTA------------------- 316 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + P+ D R +A +I F N ++ + Sbjct: 317 --------NDDGPKIVVNRLLTDGEEG--------RFVASSI---------FENKMQQQM 351 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + + R I IKD+++ R +++ Sbjct: 352 ANGDFAILYRTNAQSRAMEDALR----KKDIPYRIYGGLSFYQRKEIKDVLSYLRLLINP 407 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGISKFQ 482 +D+ + ++ P + ++ ++++E ++ + +K Sbjct: 408 KDEEALKRVINYPARGIGATTMDRLSIAANKYGKSIFEVLENLDHLPELKITKSTRTKLD 467 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + I +AQ + Q+ E I+ ++E LN Sbjct: 468 NFVNMIKHFTILAQNADAFTVADTVTKKTGLVQELKKDGTPEGIARIENIEELLNGIKDF 527 Query: 540 --EQNSYSSLQE-LISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 EQ + + LE + + V +MT+H AKGLE P V++V Sbjct: 528 VEEQKELADANGSIAEFLEDVALATDMDKDTEDEDRVALMTIHLAKGLEFPYVYIVGMEE 587 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + +S EE RL YV + Sbjct: 588 DLFPS----------------------------------AMSMNTRSELEEERRLFYVAV 613 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVY---------DSFHNDERVKKIKLTNSINK 706 TRA Q + + K + +D + K + T+ Sbjct: 614 TRAEKQAFLTYTQSRYRWGKLVDAEPSRFIEEIDDKYLDYMIPQDDYKYKPLINTDIFGD 673 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 + + T TP + T +QL +K+ P K Sbjct: 674 EVDKSKLRQTKPKAGTPPAHKPTEEQLRKLRKLRPAASEPEKAS 717 >gi|261868383|ref|YP_003256305.1| DNA-dependent helicase II [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413715|gb|ACX83086.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D11S-1] Length = 724 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++A + ++DF ++++ + +L + + I + Q HIL+DE QDT+ IQ Sbjct: 176 IYQIYQDACDRAGLVDFAEILLRSYELFLHKPL---ILQRYQQRFQHILVDEFQDTNKIQ 232 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +E IR L + VGD+ QSIY + GA+ + + + Sbjct: 233 YEWIRLLAG----------KTGKVMIVGDDDQSIYGWRGAKIENIQLFLKDFAN------ 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL +++ N G + S Sbjct: 277 --AQTIRLEQNYRSTMNILQAANELIVNNSNRLGKNLWS--------------------- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + A +A I + + Sbjct: 314 -------EGNQGEPVGIYAAFNELDE-------ALFVASQIKTWVEDGG----------K 349 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + +I +I + IKD +A R I +++ Sbjct: 350 LNDCAILYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ K A + + Sbjct: 406 DDAAFERVINTPPRGIGDRTLDTLRNLTREHQITLWQATNLALQENKLAGRAATALLRFM 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L + ++ Q + G + I+ L+E ++ + Sbjct: 466 ELINSLQRDTEEMPLFAQTDFVIKHSGLYQMYKQEKGEKGEVRIENLEELVSAAREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + +L + L +A H V +MT+H+ KGLE P VF++ +F Sbjct: 526 EDAEDMTDLTAFLTHASLEAGEEQAAPHQACVEMMTLHSVKGLEFPRVFMIGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEAGRLEEERRLAYVGITRAKQ 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|153206879|ref|ZP_01945697.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177'] gi|165918247|ref|ZP_02218333.1| DNA helicase II [Coxiella burnetii RSA 334] gi|120576952|gb|EAX33576.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177'] gi|165918107|gb|EDR36711.1| DNA helicase II [Coxiella burnetii RSA 334] Length = 720 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YE+ +++ ++DF L+ SA +R Q HIL+DE QDT+ IQ Sbjct: 174 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 230 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +++L + V AVGD+ QSIYS+ GA+ + + R Sbjct: 231 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST IL + V +N G LW Sbjct: 273 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 310 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + F+ + A + I + Sbjct: 311 ------TDSRTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 347 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D+ +L R + L D +I + IKD +A R + ++ Sbjct: 348 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 403 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ P + + T R ++++ Q ++ QH I Sbjct: 404 DDAAFERVVNVPTRGIGNTTLVALRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 463 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542 + + L + + +L + G ++ L+E +N T + Sbjct: 464 ELVDRLQDETKNLPLAEQTEKMLMGSGLLALYKKDNSEKGLSRVENLEELINATSQFTPT 523 Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 +L L + L ++ H + V +MT+H AKGLE P+V + +F H+ Sbjct: 524 DDLALSPLDAFLSHVALETGEEQASAHSDCVSLMTLHAAKGLEFPLVIISGLEEDLFPHR 583 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YVGMTRA ++ Sbjct: 584 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 609 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 LI+ + + + + Sbjct: 610 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 648 >gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24] gi|116609487|gb|ABK02211.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24] Length = 830 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 114/715 (15%), Positives = 215/715 (30%), Gaps = 140/715 (19%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + S + + + L+ + Sbjct: 118 AAAEMRERIEALVGGRAKIMWISTFHSSCVRILRQEAANV-----GLKSNFSIYDSADSL 172 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ + P+K + I K LK +L D + Sbjct: 173 RLVTQVSKSLDLDPKK-FAPKAIQHKISALKNEL----------IDADSYSSSANHNDPF 221 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + Y + ++ +DF+DLI T + + + + H+L+DE Q Sbjct: 222 ESAVADVFKGYTQRLRQANAMDFDDLIAETVYMFRAFPA---LAESYRRRFRHVLVDEYQ 278 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R + + L VGD QSIY+F GA+ + ++ ++ Sbjct: 279 DTNHAQYALVREIVGEG-------PGASELTVVGDSDQSIYAFRGADIRNIVEFEKDYPN 331 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I+L ++RST +ILT + V S N + H+ G Sbjct: 332 --------ARTIKLEQNYRSTQNILTAANSVISRNPNRPEKRLWTAEGEGHKII-----G 378 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 V + A+ IA I + D Sbjct: 379 YV------------------------------GENEHDEAQFIAKEIDRLQDED------ 402 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++ D+ + R + I + + + IKD +A R Sbjct: 403 ---NLRPGDVAIFYRTNAQSRSIEDVL----VRVGLPYKVVGGTRFYERKEIKDALAYLR 455 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479 +++ +DD++ +L P + + T + + A+ + Sbjct: 456 VLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAALAERERTSFMAAARRADQAPGMATRSVN 515 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 +K + +L +A +L S + ++ L E + Sbjct: 516 AVLGFVKLLDDLAEVASGSGAAAALEAVLEQTGYLAGLRSSTDPQDESRVENLAELVAVV 575 Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHN------------EVRIMTVHTAKGL 583 EQ + SL + ++ + + + V +MT+HTAKGL Sbjct: 576 REYEQENPEGSLGAFLEQVSLVADADQIPDAPGADIDAAVAEAKRLGVVTLMTLHTAKGL 635 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL +F H+ Sbjct: 636 EFPVVFLTGMEHGLFPHQ----------------------------------RSATDPKE 661 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 E RL YVG+TRA +L + + S +S + + ++ Sbjct: 662 LAEERRLAYVGLTRARKRLYVTRSEVRSMWGQSQYNPASQFIEEIPAELVEWRRE 716 >gi|240081594|ref|ZP_04726137.1| UvrD [Neisseria gonorrhoeae FA19] gi|240124369|ref|ZP_04737325.1| UvrD [Neisseria gonorrhoeae PID332] gi|268597691|ref|ZP_06131858.1| DNA helicase II [Neisseria gonorrhoeae FA19] gi|268682996|ref|ZP_06149858.1| DNA helicase II [Neisseria gonorrhoeae PID332] gi|268551479|gb|EEZ46498.1| DNA helicase II [Neisseria gonorrhoeae FA19] gi|268623280|gb|EEZ55680.1| DNA helicase II [Neisseria gonorrhoeae PID332] Length = 735 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|91791848|ref|YP_561499.1| DNA-dependent helicase II [Shewanella denitrificans OS217] gi|91713850|gb|ABE53776.1| ATP-dependent DNA helicase UvrD [Shewanella denitrificans OS217] Length = 722 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 113/705 (16%), Positives = 226/705 (32%), Gaps = 136/705 (19%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + K + + T + L Q+ Q +++ Sbjct: 66 AAAEMRERVEKVAGSNMGRMWIGTFHGLAHRLLRTHF-----QDANLPQSFQIIDSDDQL 120 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 LL L +K ++ K++ +R + F Sbjct: 121 RLLKRI-LKSLNLDEKQYPPRQAQGYINGKKDQ---------GLRPKHIDAGGFPIEQNL 170 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L + Y+E+ + ++DF ++++ ++L + + + HIL+DE Q Sbjct: 171 LN----IYKVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQ 223 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ IQ+ IR L + + VGD+ QSIY + GA+ + + + + Sbjct: 224 DTNAIQYAWIRVLAGN----------SANVMIVGDDDQSIYGWRGAQVENLHKFLQDFP- 272 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 S I L ++RS+A+IL +++ + + G Sbjct: 273 -------GSSTIRLEQNYRSSANILNASNELIANNPDRLGKK------------------ 307 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + S F+ + + AR I I + Sbjct: 308 ---LW-------TEDKDGEPISIYCAFNEMDE-------ARYIVSRIQDWQEKGGAL--- 347 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 D +L R + ++ ++ + IKD M R Sbjct: 348 -------TDCAILYRSNAQSRVLEEAF----LHKGMAYRIYGGLRFFERQEIKDAMGYMR 396 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGIS 479 I + DD +F ++ +P + + + T R T+++ + A + Sbjct: 397 LINNHNDDAAFERIVNTPTRGIGDRTLDIMRTTARQHQLTLWQASLRLLEEKVLAGRAAN 456 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536 + + I +L + ++ R + + G + + L+E + Sbjct: 457 AVRGFMDLIVDLKVDTEAMQLFTMVDTVVNTSGLRSMYQAEKGEKAQSRIENLNELVTAA 516 Query: 537 LRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 E + EL + L + A + V++MT+H+AKGLE P+VF+ Sbjct: 517 RSFEMPEELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVE 576 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F K +E RL YVG Sbjct: 577 EGIFPSKMALDEG----------------------------------DRLDEERRLCYVG 602 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 MTRA ++L I + + + + + + +++ Sbjct: 603 MTRAMEKLTISYAESRRIYGREDYASPSRFIGEIPAKYVEEIRLR 647 >gi|261365712|ref|ZP_05978595.1| DNA helicase II [Neisseria mucosa ATCC 25996] gi|288565733|gb|EFC87293.1| DNA helicase II [Neisseria mucosa ATCC 25996] Length = 735 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEILQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGAHVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +ILT + V + G + Sbjct: 280 ----VKLEQNYRSVGNILTAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D A+ I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P I + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ L + Sbjct: 467 QVGQMPLPEIIVGILKDSGLTEHYKTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPD 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SE----------------------------------YSLTERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|325135039|gb|EGC57667.1| DNA helicase II [Neisseria meningitidis M13399] Length = 735 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 101/582 (17%), Positives = 192/582 (32%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + +FAVG Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR I + +I VL R + +I Sbjct: 333 -----ARFILDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P + + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E A +K ++ I L + + IL + + ++ Sbjct: 434 NEQGITLWQAACNAGAKAAKVVAFVRLIEALRNQVGQMPLSEIIVGILKDSGLTEHYRTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ +L E +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNATLESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH AKGLE VFL F + Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|308234140|ref|ZP_07664877.1| UvrD/REP helicase [Atopobium vaginae DSM 15829] gi|328943635|ref|ZP_08241100.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829] gi|327491604|gb|EGF23378.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829] Length = 868 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 97/733 (13%), Positives = 209/733 (28%), Gaps = 141/733 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L Y+ + + VS + + ++ + L Sbjct: 64 GAGSGKTRVLTYRIAYLIEEQGVSPWSILAITFTNKAAKEMRERIEALLPGRTQGMWVST 123 Query: 66 FSLLSSFFLTQKFTP---QKNII---TQEINKKSPDLKEKLK---------KSQDEFIKI 110 F + L KN T + + + L ++ + Sbjct: 124 FHAMCVRILRTHAERLGYSKNFTIYDTDDTKRLIKHIMGDLNLDPKKYAPNAIRERISQA 183 Query: 111 RDRFNTYKMFKSTL---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ T + + T A L + +E+ + +DF+DL++ T +L K Sbjct: 184 KNAAQTPQDMEETAGGSALLETTAEVYRIFEQRLRTANAMDFDDLLVKTYELFSKNPD-- 241 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + +I +DE QDT+ +Q+ + L + + L VGD+ QSIY Sbjct: 242 -VLEYYQNIFKYISVDEYQDTNAVQYALTNLLARKY----------QNLMVVGDDDQSIY 290 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 S+ GA+ +L ++ + +++L ++RST IL + V + Sbjct: 291 SWRGADITNILSFRKDYPQ--------AHVVKLEQNYRSTGHILHAANAVVKHNSRREAK 342 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + G V++++ + + R Sbjct: 343 ELFT---------KAGDGQKVEVFQASDERDEG--------------------------R 367 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I I + + DI V R + ++ + + Sbjct: 368 WIGAEIEKLHDSG----------CAYSDIAVFYRMNAQSRILEDMF----LRAGVPYKIV 413 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466 D I+D++A + +++ DD+S + ++ +P I KI + Sbjct: 414 GGTRFFDRAEIRDVLAYLKVVVNPFDDVSVLRIINTPRRGIGTTSIDKIQSYANDRNISF 473 Query: 467 YEYIQKFANCGISKFQHVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 +E + + + + E + IL S Sbjct: 474 FEAVCACCDEKDLLNARLRTKLSEFVSCIQKAQTMHGDLSKVVSAILDETHLVDALKSEG 533 Query: 522 GNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 E + + EFL+ E + + + L+S + + + + V + Sbjct: 534 SVEAESRIENIQEFLSVAAEFEASHDNMEETLMSLQDLAEAGLIDSQQLDELGVPTLDSQ 593 Query: 579 TAKGLES---------------------PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + + + V + + + Sbjct: 594 ASSAVNARPSAQVKDIIAVNQQGNSQTLDTVQVAASEHTADQGAVDANLAAFIEWLALRS 653 Query: 618 IPIWIPQSK-----------------------SRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + + I + +S EE RL YV Sbjct: 654 DLDTLSGQTSAITMMTVHAAKGLEFPVVFVAGMEDGIFPHVAFDRSESLIEEERRLAYVA 713 Query: 655 MTRASDQLIICKH 667 +TRA +L + Sbjct: 714 ITRARKRLFLSYA 726 >gi|88811691|ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus mobilis Nb-231] gi|88791082|gb|EAR22195.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus mobilis Nb-231] Length = 1117 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 153/936 (16%), Positives = 294/936 (31%), Gaps = 98/936 (10%) Query: 44 PTILKKAQTLQQASQTQCIEERFSLLSSF-----FLTQKFTPQKNIITQEINKKSPD--- 95 + Q ++A Q L+ TQK T +K + + Sbjct: 239 AELRALVQVYRRALQHGASPRALMALAFVPPRCSAHTQKLTFRKWGRQGKWQSAATASGL 298 Query: 96 -------LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 L + + + + L Y++ K+ +LD Sbjct: 299 SKAAGTALSREGEALYQVVGAACTALQGAVAIGAFEQLAESLRPLLERYQDYKRAAALLD 358 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F+DL+ LL+ + +R + +IL+DE QDT +Q E++ L + Sbjct: 359 FDDLLATACALLRDP-ANEPVRRALSARYRYILVDEFQDTDPLQVEILWRLCGEGTHDTP 417 Query: 209 THS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265 LF VGD KQ+IY F GA+ + + + I+E+ +FR Sbjct: 418 WQERVLRSGALFCVGDPKQAIYRFRGADVATYVAARERLKAADPEC-----ILEVTANFR 472 Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325 S IL V++ F+ P A G R+ V+L V Sbjct: 473 SYRPILEWVNERFAAPLTAVGQPGF-QPLAPTRTPPDDAPRVVRLTVPVA---------- 521 Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385 + D A+R+A +IG I + + R + DI++L + Sbjct: 522 -----AADDKPRPSECREAEAQRVAELCQRLIGGYPIHTGRRPRPCRPGDIVLLAPSGTE 576 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 D ++V I+DL+A+ R + D ++ +L+ PL Sbjct: 577 LWRYERALE----DRGVAVASQAGKGFFRRQEIQDLIAITRVLADARDTVALGALLRGPL 632 Query: 446 FNFSEDDIFKICTQRHETETVYEY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 +E+ + I Q E + A + + ++ + L A +P Sbjct: 633 VGLTEEALLDIVDQLPPPEDCAGSARLTLWTEPAYVADTLARTTLEILQALAARALDTTP 692 Query: 501 HDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLNFTLRNEQNSYSSL-QELISELEQ 556 + R I R + ++ FL + + ++ + E Sbjct: 693 FALLGQAVAELHVRPLLIHRHSGGAERALANVELFLEMSKPYAARGLFAFAADMRTRWED 752 Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616 + + A + V ++T+H+AKGLE P+V V+T S+ + L D Sbjct: 753 AEASTEGRPDAQEHAVHLITMHSAKGLEWPIVIPVNTVSEGRAAGGP--------LFDRS 804 Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676 I R + K + E RLLYV TRA L++ + + Sbjct: 805 DQRIHYCLGAFRAERYVTALDEEKAEQRREQVRLLYVAFTRAEQLLVLPQPLEAESGWFG 864 Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736 D + + + + + R Sbjct: 865 LLDLRLDQLPTLDDGGWGSSLPERIPAQIINGQDRVRFQHEAQRIQAARRA--------- 915 Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796 P +++ + +++ RG ++HKL++ + T Sbjct: 916 ----LVWRRPSEHEPAGAAPSMAEESSVFAEPAADAMSPAEGGALRGTVLHKLMEEVLTE 971 Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYK---------NLLLSITRLLENPMMTTAMSCDSYS 847 + + + + + L + R L P++ + Sbjct: 972 EVDEAAQVLQTRAAELLAQLAPAPVEAPPISDSPAELAEVVRRTLALPVVVAL-RTRLLA 1030 Query: 848 EVSV---SGKINCPKKDIIISGRIDQISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIA 902 EV + P+ + +ISG D +++ + ++K+ E + + Sbjct: 1031 EVPIYDCYKVAEAPRAETLISGVADALALGVDGTVEAVIDWKSDIAPS---ERVRRLYRE 1087 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938 Q+ Y + L++Y+S +V I Sbjct: 1088 QVRAYLVATQAK------RGLVVYMSLAEVDEITAA 1117 >gi|293392075|ref|ZP_06636409.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952609|gb|EFE02728.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1] Length = 724 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 101/551 (18%), Positives = 187/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++A + ++DF ++++ + +L + + I + Q HIL+DE QDT+ IQ Sbjct: 176 IYQIYQDACDRAGLVDFAEILLRSYELFLHKPL---ILQRYQQRFQHILVDEFQDTNKIQ 232 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +E IR L + VGD+ QSIY + GA+ + + + Sbjct: 233 YEWIRLLAG----------KTGDVMIVGDDDQSIYGWRGAKIENIQLFLKDFAN------ 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL +++ + N G + S Sbjct: 277 --AQTIRLEQNYRSTMNILQAANELIANNSNRLGKNLWS--------------------- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + A +A I I + Sbjct: 314 -------EGNQGEPVGIYAAFNELDE-------ALFVASQIKTWIEDGG----------K 349 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + +I +I + IKD +A R I +++ Sbjct: 350 LNDCAILYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ I K A + + Sbjct: 406 DDAAFERVINTPPRGIGDRTLDTLRNLTREHQITLWQAINLALQENKLARRAATALLRFM 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L + ++ Q + G + I+ L+E ++ + Sbjct: 466 ELINSLQRDTEEMPLFAQTDFVIKHSGLYQMYKQEKGEKGEVRIENLEELVSAAREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + +L + L +A H V +MT+H+ KGLE P VF++ +F Sbjct: 526 EDAEDMTDLTAFLTHASLEAGEEQAAPHQACVEMMTLHSVKGLEFPRVFMIGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEAGRLEEERRLAYVGITRAKQ 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|15676157|ref|NP_273289.1| DNA helicase II [Neisseria meningitidis MC58] gi|7225454|gb|AAF40687.1| DNA helicase II [Neisseria meningitidis MC58] Length = 735 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 102/582 (17%), Positives = 193/582 (33%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + + +FAVG Sbjct: 204 QNNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGASVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR I + +I VL R + +I Sbjct: 333 -----ARFILDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P + + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E A +K ++ I L + S + IL + + ++ Sbjct: 434 NEQGITLWQAACNAGAKAAKVVAFVRLIEALRNQVGQLSLSEIIVGILKDSGLTEHYRTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ L E +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPENISDDPAFPILAFLSNAALESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH AKGLE VFL F + Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|251792813|ref|YP_003007539.1| DNA-dependent helicase II [Aggregatibacter aphrophilus NJ8700] gi|247534206|gb|ACS97452.1| DNA helicase II [Aggregatibacter aphrophilus NJ8700] Length = 724 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 103/552 (18%), Positives = 186/552 (33%), Gaps = 116/552 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + ++DF ++++ + +L + + I + Q HIL+DE QDT+ I Sbjct: 175 RIYQIYQDACDRAGLVDFAEILLRSYELFLHKPL---ILQRYQQRFQHILVDEFQDTNKI 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E IR L + VGD+ QSIY + GA+ + + + Sbjct: 232 QYEWIRLLAG----------KTGKVMIVGDDDQSIYGWRGAKIENIQLFLKEFDN----- 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL +++ S N G + S Sbjct: 277 ---AHTIRLEQNYRSTMNILQAANELISNNNNRLGKNLWS-------------------- 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + F+ L + A +A I I Sbjct: 314 --------EGNQGDPVGIYAAFNELDE-------ALFVASQIKTWIEDGG---------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + D +L R + +I +I + IKD +A R I ++ Sbjct: 349 KLNDCAILYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANR 404 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHV 484 +DD +F ++ +P E + + R T+++ K A + Sbjct: 405 QDDAAFERVINTPPRGIGERTLDTLRNLTREHQITLWQATNLALQENKLAGRAATALLRF 464 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I+ L + ++ + + G + I+ L+E ++ + Sbjct: 465 MELINSLQRDTEEMPLFAQTDFVIKHSGLYEMYKQEKGEKGEVRIENLEELVSAAREFIK 524 Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + EL + L +A H V +MT+H+AKGLE P VF++ +F Sbjct: 525 PEEAEDMTELTAFLTHASLEAGEEQAAPHQACVEMMTLHSAKGLEFPRVFMIGVEEGLFP 584 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 585 S----------------------------------FRSFEEAGRLEEERRLAYVGITRAK 610 Query: 660 DQLIICKHSNTS 671 +L I + Sbjct: 611 QKLTISYAESRR 622 >gi|256369829|ref|YP_003107340.1| DNA helicase II [Brucella microti CCM 4915] gi|255999992|gb|ACU48391.1| DNA helicase II [Brucella microti CCM 4915] Length = 858 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 196/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL ++ + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAARLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|161870830|ref|YP_001600003.1| DNA helicase II [Neisseria meningitidis 053442] gi|161596383|gb|ABX74043.1| DNA helicase II [Neisseria meningitidis 053442] Length = 694 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 136 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 192 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 193 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 238 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 239 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 270 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 271 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 310 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 311 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 365 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 366 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKIAAFVRLIEALRN 425 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ +L E Sbjct: 426 QVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 485 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 486 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 545 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 546 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 571 Query: 660 DQLIICKHS 668 +L I Sbjct: 572 KRLYITMAQ 580 >gi|222053487|ref|YP_002535849.1| UvrD/REP helicase [Geobacter sp. FRC-32] gi|221562776|gb|ACM18748.1| UvrD/REP helicase [Geobacter sp. FRC-32] Length = 746 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 103/717 (14%), Positives = 218/717 (30%), Gaps = 129/717 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ ++++ + + V + + + L + Sbjct: 27 GAGSGKTRVIVHRIAYLITERGVPPWQILAVTFTNKAAAEMRGRVEKLLP-GGETPLIST 85 Query: 66 FSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F + L ++ + ++ K ++ +L K + Sbjct: 86 FHSACARILRREIHHLGYDSSFAIYDDKDGEKLIKEIVAELHLDEKRFPAKLFTAAIDEC 145 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 ++ T + A Y++ ++ LDF DL++ T L ++ + Sbjct: 146 KNAGRTPDDLPMGDYMADKIGQVYAAYQKRLQQCNALDFGDLVLLTVRLFEEFPE---VL 202 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + I +DE QDT+ IQ+ +++ L + + L VGD+ QSIY + Sbjct: 203 ARYQDRYRWIQVDEYQDTNPIQYRLVKLLAGN----------RQNLCVVGDDDQSIYRWR 252 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+ + +L + + +++L ++RST+ IL+ V + + + Sbjct: 253 GADIRNILDFEDDFPR--------VKVVKLEQNYRSTSTILSAAGAVVAKNRGRKAKT-- 302 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 LW + + D + AR + Sbjct: 303 -------------------LW-------TENPPGEPVVYRRLMDEREE-------ARFVC 329 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + + + V R + ++ I Sbjct: 330 RQIEQYVRKGGDLAG----------VAVFYRANAQSRVVEDAMVAD----GIPYHMIGGM 375 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469 IKD++A R +++ D++S ++ +P + KI R + +YE Sbjct: 376 RFYARQEIKDILAYLRVLVNPADEVSLKRIVNTPARGIGHATMEKITELARRKGILLYEA 435 Query: 470 IQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 + + A K ++ + + + + + I+ + + Sbjct: 436 LSEAAEGGLLAAGPRGKIAGFVELLEQFRQLMDAVPLTELTSRIIQETGYAMKLKEERTD 495 Query: 524 EVIDVL-DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAK 581 E D L + + E + + L + LEQ +MT+H+AK Sbjct: 496 EAQDRLANLEELLSALEEFERRTEERTLAAFLEQVALISDLEQEGKGSESATLMTLHSAK 555 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE P+VF++ ++F H + Sbjct: 556 GLEFPLVFMIGMEEKLFPHSRSLEEPEQMEEE---------------------------- 587 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 RL YVGMTRA ++L + + + D V+ Sbjct: 588 ------RRLCYVGMTRARERLFLTNARRRRIFGQEQYNPPSRFLADIPRELLDVEDE 638 >gi|94311565|ref|YP_584775.1| ATP-dependent DNA helicase UvrD [Cupriavidus metallidurans CH34] gi|93355417|gb|ABF09506.1| DNA-dependent ATPase I and helicase II [Cupriavidus metallidurans CH34] Length = 787 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 106/652 (16%), Positives = 206/652 (31%), Gaps = 145/652 (22%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F++L S + + K ++ + +N K Q ++ Sbjct: 96 LRAHFRDAGLPQTFAILDS---QDQLSAIKRLL-KGLNVDDEKYPP--KNLQYFINNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + ++ L A Y+E ++ V+DF +L++ +LL+ D IR Sbjct: 150 QGLRPADVEANDDFNRRFVDLYAAYDEQCQREGVVDFAELLLRCYELLRYNDA---IRQH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 H+L+DE QDT+++Q++ ++ L + +FAVGD+ QSIY+F GA Sbjct: 207 YQHRFRHVLVDEFQDTNVLQYQWLKLLAG------YGSGNAAAVFAVGDDDQSIYAFRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + ++ + R +I+L ++RS IL + + S G + + Sbjct: 261 NVGNMRDFEQEFRVR--------HLIKLEQNYRSHGHILDSANHLISHNARRLGKNLRTD 312 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V++++ + A I Sbjct: 313 ---------AGHGEPVRVFQAGSDGQE--------------------------ASWIVEE 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I + I + +I +L R + +I I Sbjct: 338 IRDQIAQG----------MSRSEIAILYRSNAQSRVIEHAL----FSSGIPYRVYGGLRF 383 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471 + +K +A + I + +D +F ++ P + + R ++ E + Sbjct: 384 FERAEVKHALAYLQLIENPRNDAAFGRVVNFPTRGIGAKSLEVLQDAARQYNCSLAEAVA 443 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530 S I+ I ++ + + + + G + I+ L Sbjct: 444 YVPGKAGSSLGAFIRLIEQMRAETSRMTLAQTVEYVTNTSGLMTHYQTEKEGQDRIENLQ 503 Query: 531 EFLNFTLRNEQNSYSSLQELIS------------------------------------EL 554 E + L+ L L Sbjct: 504 ELVTAAQAFVVEEGYGLEALGRMLPANRDAMPALAQGEQDQQVLDPEQLPVVMTPLVAFL 563 Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 A + V++MTVH AKGLE VVF+ +F H++ Sbjct: 564 THASLEAGDNQAQAGQDAVQMMTVHAAKGLEFNVVFITGLEEGLFPHENS---------- 613 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++ EE RL+YV +TRA +L + Sbjct: 614 ------------------------AMEADGLEEERRLMYVAITRARARLYLS 641 >gi|261400846|ref|ZP_05986971.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970] gi|269209307|gb|EEZ75762.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970] Length = 733 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 112/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E K +DF+DLI Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEDVLQTASNIWEQQTARVYASYQETLKSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +++L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 285 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 312 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 313 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 360 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 361 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 416 Query: 453 IFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 417 LGKLNTYAHEHECSLYEAAQNEEALAALNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 476 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + E +++ R ++ EL + Sbjct: 477 SLLEEIGYENHLMQNEEGKAGEIKWRNVGELVSWFARKGGEDGKNIIELAQTVALMTLLE 536 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 537 GKD-EEEADAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 575 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA +L + + Sbjct: 576 ---------------DSIEEGNVEEERRLMYVGITRAKRRLTLTHCVKRKKQGIWQFPEP 620 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 621 SRFIGEMPQED 631 >gi|34495660|ref|NP_899875.1| DNA helicase II [Chromobacterium violaceum ATCC 12472] gi|34101515|gb|AAQ57884.1| DNA helicase II [Chromobacterium violaceum ATCC 12472] Length = 713 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 100/544 (18%), Positives = 187/544 (34%), Gaps = 111/544 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ ++ V+DF +L++ + +LL + + +R +HIL+DE QDT+ + Sbjct: 170 ELYAAYDAQCRREGVVDFAELLLRSYELLSRNEA---LRAHYSSRFSHILVDEFQDTNRL 226 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ L + LFAVGD+ QSIY+F GAE + Sbjct: 227 QYAWLKLLAGE----------HGALFAVGDDDQSIYAFRGAEVGNMRALLSDFH------ 270 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + L ++RS +IL + + + G + LW Sbjct: 271 --VAEPVRLEQNYRSMGNILNAANALIEQNDGRLGKN---------------------LW 307 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 D+ + + + D A I ++ + Sbjct: 308 ------TDAGEGDKIRFFQAGSDGEE--------AEFIVDEAKSLHRDG----------L 343 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 DI VL R + L+ + + +I + IK +A R + + Sbjct: 344 ALSDIAVLYRSNAQSRLLEHVL----VNAQIPYRIYGGLRFFERQEIKHALAYLRLVANP 399 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYE-YIQKFANCGISKFQHVIKYIH 489 +DD + + ++ P + + R + T+++ Q +K + I Sbjct: 400 DDDNALLRVINVPARGIGARSVENLQAASREQGVTLWQAACQSGGGRTAAKIGEFVLLIE 459 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQNSYSSL 547 +L + + + +L++ R + G E + LDE +N + Sbjct: 460 KLREQCRDFNLAETISLVIDRSGLRDMYEQDKKDGEERLANLDELVNAAASFLPDQPE-- 517 Query: 548 QELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 Q L L + A + +++MTVH AKGLE VF+ +F H++ Sbjct: 518 QALTEFLAAASLEAGEHQADAGSDALQLMTVHAAKGLEFDAVFVSGLEEGLFPHENSV-- 575 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 + +E RL+YV +TRA +L + Sbjct: 576 --------------------------------MDGKGLQEERRLMYVAITRARKRLYLSS 603 Query: 667 HSNT 670 + Sbjct: 604 AQSR 607 >gi|269101917|ref|ZP_06154614.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp. damselae CIP 102761] gi|268161815|gb|EEZ40311.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp. damselae CIP 102761] Length = 1221 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 127/878 (14%), Positives = 263/878 (29%), Gaps = 130/878 (14%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDVSAWIRYKIDQEINHILID 183 EAK + L F+DL+ L+ ++ + +I +ID Sbjct: 334 LADAITSCRELLAEAKLRKGWLSFDDLLTQLAAALQANDNASASKLAQRIRTLYPVAMID 393 Query: 184 EVQDTSLIQWEVIRSLTEDFF----------VGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 E QDT +Q+ + ++ + P LF +GD KQ+IY+F GA+ Sbjct: 394 EFQDTDPLQYYIFNTVYGHSSLVEDENFSEGSDSDAARGPSGLFMIGDPKQAIYAFRGAD 453 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 ++ +R T L ++RS+AD++ V+ +F+ P+ D Sbjct: 454 IFTYIQARRQVSAHYT----------LATNWRSSADMIAAVNTIFATPDRPFIYDSDIPF 503 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ + + + + + +A A I Sbjct: 504 -----AAVNHSPKATERGWILDGVDQKALTFWLAQEEAPIAPISKGDYNKQMAEATASEI 558 Query: 354 SNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 ++ + ++ IQA DI VLVR + +I + L SV ++ Sbjct: 559 QRILTLAQQDKAHFVNGSEQNKIQAGDIAVLVRTGSEGAMIR---QALAQQGIASVYLSN 615 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 R + + D+ L + +L E++ + L S F + ++ ++ + E E Sbjct: 616 RDSVFSSIEAADIERLLQAVLLPENERTLRAALASSFFALTATELDRLNQEEDEWERWVG 675 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528 + + ++ L + + H +L G + Sbjct: 676 AFRDYRTLWQNR--------GVLPMLRHVIAKHQIAERLLTHNGGERSLTDIL------H 721 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYP---PTIKRAHSANHNEVRIMTVHTAKGLES 585 + E L + + Y ++ L +E + ++ N V+I+T+H +KGLE Sbjct: 722 IGELLQQASQTLDSDYGLIRWLAERIESPNGNLDEEQLRLESDRNLVQIVTIHKSKGLEY 781 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 +VFL + I + ++ Sbjct: 782 DLVFLPFVC-----GYRAVDRALYHDEETQQAIFDVKGG--------EASMALAEQERLA 828 Query: 646 EYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 E RL+YV +TRA I +K + + N + LT ++ Sbjct: 829 EDLRLIYVALTRAVYGCYIGMAPVRNGMSRKEPTGLHHCAIGWLVQNGKEGGVADLTAAL 888 Query: 705 NKDEWIAYEWSTHHP---------ENTPLEREETIKQLMDEQKIPKKLFS---------- 745 N + A + P + + +E + + + + S Sbjct: 889 NLLQTNAQVMTIAEPPKCSSELWQADEEIPQELVASRFQRDIERNWWITSYSGLVKQGNK 948 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHKR 801 P S+ D + + + G +H + + I Sbjct: 949 HHDASFEAPGFDVDSSQDKADDEPVLVPERSIYTFPKGARPGTFLHTIFEEIEFTTSADS 1008 Query: 802 KNFIT-SYCTKNAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVSVSGK 854 + + L I +++ P + + +E+ Sbjct: 1009 DETRQILLELLRLENLEPEWLPILQQLIVDVMQCPLDGQALRLGQIGANRRLAEMEFMLP 1068 Query: 855 INCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKTHHHV 889 I ++ + G ID + Q ++ ++K+++ Sbjct: 1069 IELLSSRLVNKTLARHDELSAKAGELGFATVSGMLKGFIDLVFEYQGKYYVLDWKSNYLG 1128 Query: 890 PQEI----EHIPY-----THIAQLSIYEKILKDSYPNK 918 E + + Q IY L N+ Sbjct: 1129 DDPELYRGEMLKEAMRDHRYDFQYQIYALALHRFLKNR 1166 >gi|237749150|ref|ZP_04579630.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13] gi|229380512|gb|EEO30603.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13] Length = 757 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 94/577 (16%), Positives = 190/577 (32%), Gaps = 142/577 (24%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L + YE+ ++ V+DF +L++ + +LL++ +R HIL+DE QDT+ + Sbjct: 169 ELYSLYEDQCQREGVVDFAELLLRSYELLERN---QTLREHYQDRFRHILVDEFQDTNNL 225 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q++ ++ L + +FAVGD+ QSIY+F GA +L ++ + Sbjct: 226 QYKWLKLLAGNDSS----------IFAVGDDDQSIYAFRGANVGNMLSFQQDFNVQ---- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++I L ++RS +IL + + + N G + Sbjct: 272 ----NLIRLEQNYRSHGNILEAANTLIAHNRNRLGKNLH--------------------- 306 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + S + I ++++I + Sbjct: 307 -------TDAGEGEPI-------RICEAPSDLNEVQWILEEVNHLIREG----------M 342 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + K I VL R + +I I + IK +A + I + Sbjct: 343 ERKQIAVLYRSNAQSRVIEHGL----FSAGIPYRVYGGLRFFERAEIKHAIAYLQLIDNP 398 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 ++ +F+ ++ P I + R +++E I + G + I+ I Sbjct: 399 ANNAAFLRVVNFPARGIGARTIENLQEMARMHDISLFEAIPYVSGKGGTALGSFIRLIQS 458 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 + Q + +L + + G + ++ L++ ++ + S + Sbjct: 459 IRAEVQPMNLPTLIQTVLEKSGLMMHYQTEKEGADRLENLEQLVSAAMLFLSEEGFSQEA 518 Query: 550 -----------------------------------LISELEQYPPTI-KRAHSANHNEVR 573 L + L + + ++ Sbjct: 519 PALMTEAVTPAGEKSMLTVDEVMDADVPLSMIMSPLSAFLTHASLEAGENQAQEGQDALQ 578 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MTVH+AKGLE VF+ +F H++ Sbjct: 579 LMTVHSAKGLEFDAVFITGLEEGLFPHENS------------------------------ 608 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + EE RL+YV +TRA +L + Sbjct: 609 ----AREDGGLEEERRLMYVAITRARKRLYLSYAQTR 641 >gi|319793174|ref|YP_004154814.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315595637|gb|ADU36703.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 1086 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 143/925 (15%), Positives = 312/925 (33%), Gaps = 92/925 (9%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQK 77 + +++ +L ET N T K A+ + E S + Sbjct: 245 QALRGDSVRRRWLDRAAALGRET-NKTPQKAAEAIIDVFGVGEPAVESLSAALAHLRKNF 303 Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137 F ++ +T+ + K ++ + + + + + L L A + Sbjct: 304 FVASEDRLTKNLQKF--PAAQEAEAELQVLCAAQAQHAAWLYQQRMTRLTRL---LIAAF 358 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 + K+ + +D D+ LL + +S W++ ++D I H+LIDE QDT+ +QW+ Sbjct: 359 ADVKRAHGWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPLQWQ--- 415 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 +L SS +F VGD KQSIY F AEP+ + K+ G + Sbjct: 416 ALYGWLSSYTGAGSSAPRVFIVGDPKQSIYRFRRAEPQVFIAA-----KKFVREGLDGEL 470 Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 + + R+ ++ +V++ ++A H + R + ++L Sbjct: 471 LNCDHTHRNARAVVGLVNQAMLAAQDAGEF----DGYRAHTTERGDEGELLKLPAIDRDA 526 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377 + + ++ + I + I+ Sbjct: 527 LGDAAEAAPADDGMLHWRDSLVTPRVLPEEQLLQ--KECEQAARWVAQRIADGIPPRQIM 584 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 VL R+R + R I V ++ L D ++D++AL ++S DLS Sbjct: 585 VLARRRNRLSAMQDALR----QRHIPVQQPEKNELHDAPEVQDMVALIDALVSPTHDLSL 640 Query: 438 VCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496 LKSPLFN ++ + ++ QR + + + + + + + Sbjct: 641 ARALKSPLFNIDDEVLVQLALRQRAHSSSSWFALIQKGEGLPPVLVETGVSLKKWQRWLV 700 Query: 497 FCSPHDFFTLILGAKKGRQQF----ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 PHD I +F + + L ++ +L E +++ L+ Sbjct: 701 TLPPHDAIDAIFHDGDVLAKFGAAVPAAMRQSALANLRGLMSASLEIEGARFATPYALVR 760 Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612 L ++ A + V+++TVH AKGLE+ V ++D + + + + Sbjct: 761 ALRAGG--VRAPSVAAPDAVQLLTVHGAKGLEADTVLMLDCDAAPPRAQTMGVLVEWKGS 818 Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672 + P +++ K+ + L++ +++ E LYV TRA ++L++ Sbjct: 819 DSAPTRFVFLASEKTPPACAASLLEEEQRARHREELNGLYVATTRARERLVLSSVKPA-- 876 Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732 ++N+ +W+ + + P E +E + + Sbjct: 877 --RANEGSWWARLESACE--------------------------------PTEADEPLVE 902 Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792 L E + + +D D + G +H+LL+ Sbjct: 903 LPVETGVRSFSMKQMPPAAA--------AVDQPSAKKAADATVDARAAAFGQAMHRLLEW 954 Query: 793 IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852 + + ++ + R + Sbjct: 955 AV---PGETLPSAHVRAAAREFMLDPQQARGAATLAER-IRAGAGAWVWDDRRVDWHGNE 1010 Query: 853 GKINCPKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 + + + RID++ ++ +I +YK+ ++ I Q+ Y Sbjct: 1011 VTLVHEGETL----RIDRLVRERETGAWWILDYKSAARPERDATLIA-----QMQRYRAA 1061 Query: 911 LKDSYPNKSLVCLLIYVSEPKVFII 935 ++ +YP ++ + + ++ + Sbjct: 1062 VQHAYPGATVRVAFL-TGQGELVNL 1085 >gi|224418472|ref|ZP_03656478.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491] gi|253827786|ref|ZP_04870671.1| ATP-dependent DNA helicase PcrA [Helicobacter canadensis MIT 98-5491] gi|313142003|ref|ZP_07804196.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491] gi|253511192|gb|EES89851.1| ATP-dependent DNA helicase PcrA [Helicobacter canadensis MIT 98-5491] gi|313131034|gb|EFR48651.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491] Length = 702 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 108/626 (17%), Positives = 210/626 (33%), Gaps = 133/626 (21%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEE 139 + T++I K+ L E + ++ T + + +Y+E Sbjct: 115 DSDDTKKILKELNCDLAPLPLIISEISRYKNSQITPQEALKNAHNELYKHIAKVYLNYQE 174 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 +N ++DF+DL++ ++LK + +I Q+ +I++DE QDT+ +Q+++++ L Sbjct: 175 TLLQNNMVDFDDLLLLPIEILKSNP---NVATEISQKYQYIMVDEYQDTNDLQYQLLKYL 231 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 ++ + VGD+ QSIYS+ GA + +L + + I+ Sbjct: 232 C----------TTHNNICVVGDDDQSIYSWRGANIQNILNFSQHF--------KGAKTIK 273 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L ++RS+ IL + + S + G + ST Sbjct: 274 LEENYRSSKSILNAANHLISNNKERLGKTLKSTL-------------------------- 307 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 + +D + A+ ++ I ++ I KDI +L Sbjct: 308 --DEGKPIEVLHSYDEQEE-------AKNLSKIIKKLLQNG----------INPKDIAIL 348 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 R + + N +I V + IKD+++ R + + DD S + Sbjct: 349 FRLNALSRSLEEGF----NRERIPYVLVGTIRFYERSEIKDVISYFRVLTNINDDFSLLR 404 Query: 440 MLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYIQKFANCGISKFQHVIK 486 ++ P + + K+ + + + I K I +F IK Sbjct: 405 IINKPKRGIGKTTLEKLKSLSQIHHCSIYELFSNQSPQLLQQEISKKTYNTIWEFFKTIK 464 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRN-EQNS 543 + +L + DF I G + +S+ EV ++EF +QN Sbjct: 465 ELQDLQAQSSLKFLDDFEEKI-----GLCKALSQNSEEVDRVSNIEEFYGLYREYVKQNP 519 Query: 544 YSSLQELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L++ ++EL V M+VH++KGLE VF++ F Sbjct: 520 LMELEDFLNELALRSDQEDTELRNEQKGVEGVSCMSVHSSKGLEFDYVFIIGLEEGFFPM 579 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + +E RL YV TRA Sbjct: 580 -------------------------------------AREDTNLQEERRLGYVAFTRAKK 602 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVY 686 +L + + + Sbjct: 603 ELYLSYVDSRFYRGNRTSLYPSRFLA 628 >gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] Length = 824 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 100/751 (13%), Positives = 213/751 (28%), Gaps = 157/751 (20%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + P + + S+ + + + R Sbjct: 78 AAAEMRERVAALVGPHAERMW--VATFHSICVRILRAQSALLGTRNSNFTIYDSDDSRR- 134 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L ++ K + + + K +L+ + + + + + Sbjct: 135 -LLGMIAKEQQLEVKKFTPRMLASAISNHKNELRDPAEAMD---------RALEDSDRTA 184 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + DF+DLI T LL+ + + H+++DE QD Sbjct: 185 QTVAAVFTEYQARLQAANAFDFDDLIGETVALLRAHPE---VAAYYRRRFRHVMVDEYQD 241 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 T+ Q+ ++R+L + P L VGD QSIY+F GA + + + Sbjct: 242 TNHAQYVLVRTLVGGAEGDDDEVGVPPAELCVVGDADQSIYAFRGATIRNIEDFEHDYP- 300 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I L ++RST IL+ + V + + + Sbjct: 301 -------DARSILLEQNYRSTQTILSAANAVIARNAGRREKN------------------ 335 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ + + + AR IA I ++ + Sbjct: 336 ---LW-------TAEGAGELLVGYVADNEHDE-------ARFIAGEIDRLVDSGE----- 373 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 D+ V R + +I + L + + ++D++A + Sbjct: 374 ----ASYSDVAVFYRTNNSSRVIEDVFVRL----GLPYKVVGGTRFYERKEVRDVVAYLK 425 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQK--------FANCG 477 + + +D ++ +L +P + + + ++ Sbjct: 426 VLNNPDDAVAIRRILNTPRRGIGDRAEACVVVHAEQRGIGFAQALRDASEGKVSLLPTRS 485 Query: 478 ISKFQHVIKYIHELIHIAQFCSPH----------DFFTLILGAKKGRQQFISRFGNE--- 524 + ++ + +L +L R + + + Sbjct: 486 VKAIAGFVEMLDDLRGRLDGDDHAGGHDSAPDVGALVEAVLERTGYRAELEASNDPQDAA 545 Query: 525 VIDVLDEFLNFTLRNEQN---------------------------SYSSLQELISELEQY 557 +D L+E + SL + + Sbjct: 546 RLDNLNELVGVGREFSSEAALQRSAREQGFVEEADADADLDEGLAEPGSLAAFLERVSLV 605 Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + + +V +MT+HTAKGLE PVVFL+ +F H Sbjct: 606 ADADEIPDD-DQGQVTLMTLHTAKGLEFPVVFLIGMEDGLFPHMRALGDP---------- 654 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + E RL YVG+TRA +L + + S+ + Sbjct: 655 ------------------------AELSEERRLAYVGITRARRRLYLTRAMMRSSWGQPM 690 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 + + ++ + + Sbjct: 691 TNPGSRFLEEIPSEAIEWQREEPAGGTGFGD 721 >gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405] gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405] Length = 662 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 91/592 (15%), Positives = 184/592 (31%), Gaps = 120/592 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 K L Y++ K +DF+DLI+ + K+ + + + +I++DE QDTS Sbjct: 161 KALYKEYQDGLKLYNAVDFDDLIMLPIKIFKEHPE---VLAEYRERYRYIMVDEFQDTST 217 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ ++ + + + + VGD+ QSIYS+ GA + + ++ + Sbjct: 218 QQYNFMKLIAD------------KNICVVGDDDQSIYSWRGASFENIRNFEKDFPEMIE- 264 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I+L ++RST IL + V S N + + S +++ Sbjct: 265 -------IKLEQNYRSTGTILAAANGVISHNVNRKVKALWSE---------KDSGRPIEI 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + A I+ I ++ + Sbjct: 309 FIP--------------------------ENEAAEADFISDMILSLKQRE---------G 333 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + D VL+R + + + I + IKDL++ R + + Sbjct: 334 FKYSDFGVLIRANSLSRPLEESF----LEVNIPYRMSGGTSFFQRKEIKDLISYLRVVAN 389 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK---------F 481 +DD++ + ++ +P + + + E + + Sbjct: 390 PDDDVNLLRIINTPRRGIGKKTLETLSALATENSCSMRTAIRLLLENPPEDMRGKSIEDL 449 Query: 482 QHVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFG------NEVIDVLDEFLN 534 + + I + +L + I+ + + ++ FL+ Sbjct: 450 KEFAELISTHRTQLLSGKGLAQKVRKLLDDIAYNEYLIAEYQKSEKAAQFKMMNIESFLH 509 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 E N + L L + + EV IMT+H++KGLE PVVF+ Sbjct: 510 SMDDWENNPDNLDGSLYDYLNRITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAE 569 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + H EE RL YV Sbjct: 570 DGLIPHARSV---------------------------------EENDGDVEEERRLFYVA 596 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 +TRA +L I + + + + + + + Sbjct: 597 ITRAQQKLFITSCRQRRKQGGITECAPSPFLDEIPADLVEYHEPDAQAEEER 648 >gi|325129035|gb|EGC51885.1| DNA helicase II [Neisseria meningitidis N1568] Length = 735 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 S + IL + + ++ G + +D LDE +N + E +++ L E Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|297516694|ref|ZP_06935080.1| DNA-dependent helicase II [Escherichia coli OP50] Length = 695 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 146 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 202 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 203 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 247 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 248 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 283 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 284 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 322 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 323 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 375 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 376 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 435 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 436 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 495 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 496 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 555 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 556 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 581 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 582 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 624 >gi|312869874|ref|ZP_07730014.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3] gi|311094614|gb|EFQ52918.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3] Length = 1386 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 123/757 (16%), Positives = 257/757 (33%), Gaps = 74/757 (9%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT----ILKKAQTLQQASQTQCIEERFS 67 + L ++ + ++ T L++ +Q + Sbjct: 329 DKDAALAQLDQFSARFQELRDRAAAAQLDDKTLTSLDKDLQQFAQARQLLVPDSWNAVRA 388 Query: 68 LLSSF-FLTQKFTPQKNIITQEI-------NKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 ++ F T P+ + + ++ + ++ S + + + + +++ Sbjct: 389 IIRGAKFRTMAGKPKGDPVAADVYATLTASRQALKKQLTGIQDSFFAYDEDQFQEISHQS 448 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY---KIDQE 176 + + Y++ K VL+F DL +L + + + Sbjct: 449 QRLLTKLSQVTVAFRRAYQQVKLSRHVLEFSDLEHYAYQILTPPADQPDWQELVANLQRH 508 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 I++DE QDT+ +Q ++ LT + +F VGD KQSIY F A+P Sbjct: 509 YQEIMVDEYQDTNRLQEAILTRLT---------NPDQHNMFMVGDVKQSIYRFRQADPSL 559 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTT 294 L + + ++ G I L +FRS +++ + +F+ A + D Sbjct: 560 FLHKYQRYRQ----PGAGDEAIVLGENFRSMSNVTDFTNLLFAQLMGADVGEIEYDQAAH 615 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 +++ ++ +++ + + ++ + + + I Sbjct: 616 LKYAATYYETADNQPRPTEILLYDANADQGAIKESPDQH----EDDKLAGELKMVGMRIK 671 Query: 355 NMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 M+ + + + R I DI++L R + I + +I + +D Sbjct: 672 QMVANEEQIFDPATQQLRPINYGDIVLLERTKS----INNTLMEEFSKLEIPLTVHDVES 727 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471 ++ +MAL R I + D+ V +L+SPL S ++ I Q Sbjct: 728 YFQATEVRVMMALLRLIDNPHQDIPLVAVLRSPLVGLSTKELAFIRLQNRSANYYGALQT 787 Query: 472 KFANCGI---------------------------SKFQHVIKYIHELIHIAQFCSPHDFF 504 +N K H + + AQ S D Sbjct: 788 FKSNYANADRHLIKPELLNATATADQPDPVAVLYDKVSHFLDQLATFRQTAQQQSLVDLI 847 Query: 505 TLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 I G + L F EQ+S+ L + I +E+ K Sbjct: 848 WQIYNETGYLDYVGAMPGGAQRQANLHAFYQRAHDYEQSSFKGLYQFIRFIEKMQEHDKD 907 Query: 564 AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619 A N V +MT+H +KGL+ P+VFL+D F+ + ++ ++ ++N Sbjct: 908 LGVAPTQLVKNTVNVMTIHGSKGLQFPIVFLIDATHG-FNQQATRETAVVDAVNKVGIEY 966 Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 + + +I +++ + E R+LYV +TRA +L+I N N +++ Sbjct: 967 TDPEEVRYDTPQRQAIISAVQQGERAEDLRVLYVALTRAEQRLVITGSFNEENRRQNLAS 1026 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 W + N+ + +WI + Sbjct: 1027 AWTRWQKAFQSPATLLGPQLRVNARSFMDWIGLALAR 1063 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 17/235 (7%) Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-ESLLSD 776 + T + +K+L + + + E + + + Sbjct: 1152 ATKTTAYQSVTDVKRLFEYPDNAVEAQWDYEQQQREKQAQGIYFNNHFAEPAFIKQADEQ 1211 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK---NAKLWPAKEYKNLLLSITRLLE 833 G H + Q + + + + PA K + + R + Sbjct: 1212 PAATTIGTATHLVFQKLPLTAGEVSPTLVADEVQRLVDQGLMTPAVAAKINVTGVARFFQ 1271 Query: 834 NPMMTTAMS--CDSYSEVSVSGKINCPK----------KDIIISGRIDQISISQQNIFIF 881 + ++ + E + +N + + +++ G ID + I + Sbjct: 1272 TAVGQQVLAVPEHYHREEPFAMVMNGAELFKEIKTSDQEQVLLHGIIDGYLETPTGIILV 1331 Query: 882 EYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +YKT H P I + QL++Y++ L P + L V + I Sbjct: 1332 DYKTDHLRPGFGEAEIVDRYRGQLNLYKEALGLMKPLPVVQMGLYLVESEQFITI 1386 >gi|40063254|gb|AAR38081.1| DNA helicase II [uncultured marine bacterium 577] Length = 749 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 101/639 (15%), Positives = 206/639 (32%), Gaps = 138/639 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ Q + + F +L S + K ++ ++IN S + + +D Sbjct: 96 LRAHYQDAGLPQAFQILDSA---DQLAVIKRVL-KDINADSEKFPPRQVQWF--INNAKD 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 +++ YE+ K V+DF +L++ + +LL + ++ ++ Sbjct: 150 GGIRGSQVEASDDFTRKMAEFYLVYEQQCNKEGVVDFAELLLRSYELLTRNEI---LQKH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 +HIL+DE QDTS +Q++ +R L +F VGD+ QSIY+F GA Sbjct: 207 YSGRFSHILVDEFQDTSQLQYKWLRLLAGVEAS----------VFVVGDDDQSIYAFRGA 256 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R II+L ++RS +IL + + + Sbjct: 257 NTGNMKDFERDFHIS--------EIIKLEQNYRSHGNILDAANTLIRNNSGRLDKN---- 304 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + D A I Sbjct: 305 -----------------LW------TSEGDGELLRVYNAPTDLDE--------AAFIVKE 333 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 ++ I+ I +L R + ++ + +S Sbjct: 334 TKSLQEEG----------IKLSQIGLLYRSNAQSRVLEHAL----FNASLSYRVYGGLRF 379 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY-- 469 + IK +A R I + DD + + ++ P + ++ + + + ++++ Sbjct: 380 FERQEIKHALAYLRMIANPNDDNALLRIINFPARGIGARSLEQLQDSAKEKGGSLWQAAI 439 Query: 470 ---------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 + A + I + + + +L Sbjct: 440 ENRGGVALNQGLKGGNLVPNIENRAAGIPKKGLNSFVFLIESMQQSCLELTLPEIIKHML 499 Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS 566 + R G ++ L+E +N ++ SSL ++ Sbjct: 500 EHSGLVPYYNSQREGANRLENLNELINAVTSYIQEAEDSSLTAFLAHASLEAGE--HQSG 557 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 +H+ +++MTVH++KGLE VFL +F H + + Sbjct: 558 NDHDAIQLMTVHSSKGLEFHSVFLSGLEEGLFPHDNSRN--------------------- 596 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + +E RL+YV +TRA ++ + Sbjct: 597 -------------EAGGLDEERRLMYVALTRAQRRMYLS 622 >gi|86358422|ref|YP_470314.1| DNA helicase II protein [Rhizobium etli CFN 42] gi|86282524|gb|ABC91587.1| DNA helicase II protein [Rhizobium etli CFN 42] Length = 808 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 112/669 (16%), Positives = 205/669 (30%), Gaps = 113/669 (16%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ DF DL+++ + +K + + +IL+DE QDT+ Sbjct: 205 RDLYFAYQARLSTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 261 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + P+ + VGD+ QSIY + GAE +LR ++ Sbjct: 262 AQYMWLRLLAQR------SKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 310 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + E G + + T Sbjct: 311 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDRT---------------- 351 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + +DS + AR I I + + Sbjct: 352 ----------DPDDVKVQVHASWDSEEE-------ARAIGEEIEQLQRGKHLL------- 387 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D+ +LVR L ++ + L I+D MA R I Sbjct: 388 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLIAQ 440 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + + + R + + Sbjct: 441 PADDLAFERIINTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD 500 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 VI+ + + + IL + + E L+ E Sbjct: 501 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 557 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 S + + LE + + N + V IMT+H+AKGLE VFL +F H+ Sbjct: 558 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 615 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL YVG+TRA + Sbjct: 616 LD--------------------------------ESGRAGLEEERRLAYVGITRAKRRCH 643 Query: 664 ICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 I SN + + + D + ++ +++ ++ + Sbjct: 644 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN 703 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQT 779 + + + + Y + P G+ +S S Sbjct: 704 SYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIDGELVAKSTSSQPSR 763 Query: 780 FNRG-LIIH 787 F G + H Sbjct: 764 FTLGDRVFH 772 >gi|300690847|ref|YP_003751842.1| DNA helicase II [Ralstonia solanacearum PSI07] gi|299077907|emb|CBJ50546.1| DNA helicase II [Ralstonia solanacearum PSI07] Length = 795 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 109/733 (14%), Positives = 209/733 (28%), Gaps = 152/733 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K Q +++ + L A Y+ ++ V+DF +L++ +LL Sbjct: 138 KNVQYFINGAKEQGRRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFAELLLRCYELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + D IR + HIL+DE QDT+ +Q+ ++ L G +P +FAVG Sbjct: 198 RYNDA---IRVHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEAGA----TPNAIFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA ++ +R I+L ++RS +IL + + + Sbjct: 251 DDDQSIYAFRGANVGNMVDFEREFH--------VGHRIKLEQNYRSHGNILDTANHLIAH 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + + G V++++ + Sbjct: 303 NTRRLGKNLRTD---------AGHGEPVRVYQSATDGQE--------------------- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I + I + T +I +L R + +I Sbjct: 333 -----AGWIVDEIRDRIASGTA----------RSEIAILYRSNAQSRVIEHAL----FSV 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 I + IK +A + + + ++D +F ++ P + ++ Sbjct: 374 GIPYKVYGGLRFFERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAA 433 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 R ++ + +K ++ I ++ + + + ++ A + Sbjct: 434 RLYGVSLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQG 493 Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549 G + I+ L E + + Sbjct: 494 EKEGLDRIENLQELVTAAQAFVAEEGYGVDAVATALPTRHDGMLRIEGGEAGELRGSDAV 553 Query: 550 --------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L++ L A + V++MTVH AKGLE VVF+ Sbjct: 554 AELVADGVPMEMTPLVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLE 613 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H++ EE RL+YV Sbjct: 614 EGLFPHENSL----------------------------------QDTDGLEEERRLMYVA 639 Query: 655 MTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 +TRA ++L + + + + + Sbjct: 640 ITRARERLYLSFAQSRVLHGQIRYHIRSRFFDELPEETLKWLTPQHAGYSPTRRAQGAQG 699 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 D +W MD + S Sbjct: 700 DSAWGRDWFKRPERGDGEAYTGRPTGGMDTGNTYADTKRAAGTGFRVGQSVFHSKFGEGV 759 Query: 767 KTNLESLLSDNQT 779 T LE +D + Sbjct: 760 ITTLEGEGADARA 772 >gi|294778328|ref|ZP_06743753.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510] gi|294447835|gb|EFG16410.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510] Length = 796 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 97/704 (13%), Positives = 206/704 (29%), Gaps = 131/704 (18%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFEDLIIN 155 Q ++ + S + + Y E +++ +DF+DL++ Sbjct: 140 QARISNAKNHLVFPDAYASNAELYQYDVNAKVPATRDIYRRYWERCRQSDAMDFDDLLVY 199 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 T L + I K ++ ++L+DE QDT+ Q ++ LT + + Sbjct: 200 TYLLFRDYPE---ICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTRE----------HQR 246 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 + VGD+ QSIYSF GA +L+ ++ + + +L ++RST I+ + Sbjct: 247 VCVVGDDAQSIYSFRGANIDNILKFTQLY--------KGAKLFKLEQNYRSTQTIVCAAN 298 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 + S + + + + Sbjct: 299 SLIEKNSEQIRKEVFS----------------------------EKAKGEPIGVFNAYSD 330 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 + + +A + + + D +L R + + R Sbjct: 331 VEEG-------EIVANQMVKLRSREH---------YSYNDFAILYRTNAQSRIFEEALR- 373 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 + IKD+++ R ++ D+ +F +L P + + K Sbjct: 374 ---KRSLPYKIYGGLSFYQRKEIKDVISYFRLAVNPNDEEAFKRVLNYPARGIGDTTLNK 430 Query: 456 -ICTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 I +++ Y +K Q + + I + ++ +I Sbjct: 431 VIDAAAQHHVSLWMVLEEPLAYGLNINKGMHTKLQGFRELVESFIVEVPKKNAYELGAMI 490 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYP 558 + + E + ++E +N E N L + +SE+ Sbjct: 491 VRQSGIMNEIYQSNDPENLSRQENIEELINGMHDFCATREEEGNENILLTDFLSEVSLLT 550 Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + ++ +MT+H+AKGLE VF+V +F + Sbjct: 551 DQD-NEKEGDAEKITLMTIHSAKGLEFKNVFVVGMEENLFPSALSLNSY----------- 598 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 EE RL YV +TRA + + + K Sbjct: 599 -----------------------KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEF 635 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 + + D + ++ + + + + + L E + Sbjct: 636 SSPSRFLKDIDVHFLKLPQEEQMARRIDERASRFCREQNERAARSLFDEPASQSSYGRSS 695 Query: 739 IPKKLFSPIKNDINEPYI--LNPSTIDTKGKTNLESLLSDNQTF 780 P + + PS K E++ + Sbjct: 696 SNISGGQKTFLVGERPKVEIIRPSIPRNLTKVGPETVSKPSAAR 739 >gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium matruchotii ATCC 14266] gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium matruchotii ATCC 14266] Length = 898 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 114/741 (15%), Positives = 214/741 (28%), Gaps = 156/741 (21%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTL-ASLTLAKY 132 +I +++ + +L + ++ D +T Sbjct: 207 DDSKRLLGMIAKDLQINAQKFPPRLLAAAISALKTELTDPDAASDEAAATRNPFDRTIAE 266 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+ + LDF+DLI T + I + H+LIDE QDT+ Q Sbjct: 267 VYTEYQRRLRAANALDFDDLIGETVRVFTTHPE---IAAYYRKRFRHVLIDEYQDTNHAQ 323 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +I +L T L VGD QSIY+F GA + + +R + Sbjct: 324 YVLISTLV-------GTGPDASELSVVGDSDQSIYAFRGATIRNIEEFERDYPQ------ 370 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL+ + V S + LW Sbjct: 371 --ARTILLEQNYRSTQNILSAANAVISHNHGRREKK---------------------LW- 406 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + + AR IA I + + Sbjct: 407 ------TDHGAGAKITGYVADNEHDE-------ARFIATEIDALFDMG----------VG 443 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 DI V+ R + I + I + I+DL+A R + + Sbjct: 444 YGDIAVMYRTNNSSRAIEEVF----IRTGIPYKVVGGTRFYERKEIRDLIAYLRVLDNPT 499 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKF--------QH 483 D++S ++ +P + I + + + + + A+ ++ Sbjct: 500 DEISLRRIINTPRRGIGDRAIATVNLYAENFGMSFADALVDAAHGKVTALGTRAKNAIAA 559 Query: 484 VIKYIHELIHIAQFCS--------PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 ++ + L A + + IL A + + + + +D L+E Sbjct: 560 FLELMDGLRVDAAEATNAITGLPDIGVVVSRILDATGYKAELEASTDPQDGARLDNLNEL 619 Query: 533 LNFTLRNEQN-------------------------------SYSSLQELISELEQYPPTI 561 ++ S+ + ++ + Sbjct: 620 VSVAREFSSEAANLMAYAAMGAGTGAGVEGNDPAEPMVGEPQPGSIHAFLEKVSLVADSD 679 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + N V +MT+HTAKGLE PVVFL+ F H Sbjct: 680 QLPDDS-TNVVTLMTLHTAKGLEFPVVFLIGWEDGQFPH--------------------- 717 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 L E RL YVG+TRA + L + + ++ + Sbjct: 718 -------------LRALGDPQELAEERRLAYVGITRARETLYLTRAMLRASWGNAVANPA 764 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + D ++ + D+W A W + P Sbjct: 765 SRFLEDIPEKLMYWRREEPGAGGWDDDWGASGWGGGSFVGGYGGYGGYGGAGGYSGRKPG 824 Query: 742 KLFSPIKNDINEPYILNPSTI 762 + K + + + Sbjct: 825 GSYRKPKIPRSSRSSTPAANL 845 >gi|238796584|ref|ZP_04640091.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia mollaretii ATCC 43969] gi|238719562|gb|EEQ11371.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia mollaretii ATCC 43969] Length = 1200 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 125/982 (12%), Positives = 285/982 (29%), Gaps = 142/982 (14%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSL 68 +E+ ++ + + S + + K++ + + ++ Sbjct: 213 DETILSRHQQIVVQIDTVKAQWRAAASELEALISSSGVDKRSYSTKHLPNWLEKVGAWAE 272 Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128 + +K + K Q + DR + L Sbjct: 273 QETGDYQLPKELEKFRQSVLFEKTKKGAAP-----QHALFSVIDRIFEQPLTLRDLILAR 327 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + ++ K++ L F+DL+ + +L++ + I +IDE QDT Sbjct: 328 AISEIRTSVQQEKRQRAELGFDDLLSKLDAVLQQSG-GELLAKSIRTRYPVAMIDEFQDT 386 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 Q+ + +L L +GD KQ+IY+F GA+ +R + Sbjct: 387 DPQQYRIFHTLYGG--------QEECGLLLIGDPKQAIYAFRGADIFTYIRARSEVSAHY 438 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 T L ++RS+ ++ V+++FS+ + + + Sbjct: 439 T----------LETNWRSSFPMVQSVNRLFSLVDVPFLFEQIPFIAVS----------AA 478 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIF 363 + + + P W + + ++AR+ A I + + + Sbjct: 479 EKNSHLSFEIKGDKQPAISFWLQPGEGIGVSEYQQLMARQCAAQIRDWLTAGQNGLAQLV 538 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + R +QA DI +LVR R + L+ L SV ++R + D KDL+ Sbjct: 539 TVDGSRPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAEAKDLLW 595 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483 L + +L+ E + + + + + + + + + E ++ + Sbjct: 596 LLQAVLAPEQERALRSAMATGVLGLDAKMLDALNHNERAWDALVEEFDRYRQHWQR--RG 653 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNE 540 V+ + E++ +L G ++ L E L L +E Sbjct: 654 VLPMLREIMACRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSE 701 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + I++ + ++ + V+++T+H +KGLE P+V+L G+ Sbjct: 702 HALIRWLAQQIAQPNHQLDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQQQ 761 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + N + ++ E RLLYV +TRA Sbjct: 762 DVLYHDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRAVY 808 Query: 661 QL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDE--------------------- 693 +I + ++ ++ D Sbjct: 809 HCSVGIAPLIKGGRKKQGDSDVHRSALGYLLQQGQAGDAQYLADKLAELTASSGGDISVS 868 Query: 694 -RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 + + A + + R + L + + Sbjct: 869 LAERPDDTPWQPQPEIVPALAARQFNRQVQDYWRVTSYSGLQQHGSSKSGASQSLSVPLQ 928 Query: 753 EPYILNPSTIDTKGKTNLE---SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809 E + + E + + + G +H LL+ + + Sbjct: 929 ELLPRLDTDAVGEQALATEISLTPHTFPRGAAPGTFLHDLLESMDFSQPIDQSWLAEQLQ 988 Query: 810 TKNAKLWPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKINCPKK------ 860 + + I ++ L + +E+ I+ + Sbjct: 989 RQGFGDQWLPMLSQWINDILQVPLNTTGVTLAGLSPQSKQAELQFYLPIDTLLRASELDS 1048 Query: 861 --------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-- 898 ++ G ID + + ++ +YK++ + + Sbjct: 1049 LIKHYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWEGKYYLLDYKSNWLGAESSAYTLEAM 1108 Query: 899 -------THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1109 THAMAEHRYDLQYQLYTLALHR 1130 >gi|306844312|ref|ZP_07476904.1| DNA helicase II [Brucella sp. BO1] gi|306275384|gb|EFM57125.1| DNA helicase II [Brucella sp. BO1] Length = 858 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 112/694 (16%), Positives = 196/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPRGAGERSELGVSENKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|315634405|ref|ZP_07889692.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC 33393] gi|315476995|gb|EFU67740.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC 33393] Length = 724 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 102/552 (18%), Positives = 186/552 (33%), Gaps = 116/552 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++A + ++DF ++++ + +L + + I + Q HIL+DE QDT+ I Sbjct: 175 RIYQIYQDACDRAGLVDFAEILLRSYELFLHKPL---ILQRYQQRFQHILVDEFQDTNKI 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E IR L + VGD+ QSIY + GA+ + + + Sbjct: 232 QYEWIRLLAG----------KTGKVMIVGDDDQSIYGWRGAKIENIQLFLKEFAN----- 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL +++ S N G + S Sbjct: 277 ---AQTIRLEQNYRSTMNILQAANELISNNNNRLGKNLWS-------------------- 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + F+ L + A +A I I Sbjct: 314 --------EGNQGDPVGIYAAFNELDE-------ALFVASQIKTWIEDGG---------- 348 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + D +L R + +I +I + IKD +A R I ++ Sbjct: 349 KLNDCAILYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANR 404 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHV 484 +DD +F ++ +P + + + R T+++ K A + Sbjct: 405 QDDAAFERVINTPPRGIGDRTLDTLRNLTREHQITLWQATNLALQENKLAGRAATALLRF 464 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I+ L + ++ + + G + I+ L+E ++ + Sbjct: 465 MELINSLQRDTEEMPLFAQTDFVIKHSGLYEMYKQEKGEKGEVRIENLEELVSAAREFIK 524 Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + EL + L +A H V +MT+H+AKGLE P VF++ +F Sbjct: 525 PEEAEDMTELTAFLTHASLEAGEEQAAPHQACVEMMTLHSAKGLEFPRVFMIGVEEGLFP 584 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 585 S----------------------------------FRSFEEAGRLEEERRLAYVGITRAK 610 Query: 660 DQLIICKHSNTS 671 +L I + Sbjct: 611 QKLTISYAESRR 622 >gi|300930020|ref|ZP_07145453.1| DNA helicase II [Escherichia coli MS 187-1] gi|300462110|gb|EFK25603.1| DNA helicase II [Escherichia coli MS 187-1] Length = 700 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 151 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 207 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 208 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 252 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 253 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 288 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 289 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 327 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 328 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 380 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 381 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 440 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 441 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 500 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 501 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 560 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 561 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 586 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 587 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 629 >gi|323499636|ref|ZP_08104604.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326] gi|323315237|gb|EGA68280.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326] Length = 723 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 184/549 (33%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+EA + ++DF ++++ ++LL+ IR HIL+DE QDT+ I Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRD---KKHIREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + + Sbjct: 229 QYAWLRMMAG----------PDAHVMIVGDDDQSIYGWRGAKIENIEKFTLEFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I L ++RST IL + + + G +LW Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S ++ L + AR I Sbjct: 310 -------TEGAEGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD ++ R + ++ Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQASLPYRIYGGMRFFERQEIKDALSYLRLMANR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + I R + T++E + A Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDQGSTMWEASIRLLDDKVLAGRAAGALSRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541 ++ I+ L + H+ ++ + G + I+ L+E + T + E+ Sbjct: 462 VELINALEDDTCEMALHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521 Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 PEEAEEMTLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVGMTRA Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 ++L I Sbjct: 608 EKLYITYAE 616 >gi|294787676|ref|ZP_06752920.1| DNA helicase II [Simonsiella muelleri ATCC 29453] gi|294483969|gb|EFG31652.1| DNA helicase II [Simonsiella muelleri ATCC 29453] Length = 735 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 98/584 (16%), Positives = 186/584 (31%), Gaps = 124/584 (21%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A YE+ ++ V+DF +L++ + ++L Sbjct: 145 RTLQGFINAQKEAGLRANVLDAPDPFTQRLIKCYAEYEQLCQREGVVDFAELLLRSYEIL 204 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + HIL+DE QDT+ +Q+ ++ L + +FAVG Sbjct: 205 NANPA---LLAHYQSRFTHILVDEFQDTNKLQYAWLKLLAD----------GGAAVFAVG 251 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + + R Q I+L ++RS +IL + V Sbjct: 252 DDDQSIYRFRGANVGNMTQFLRDFQINQP--------IKLEQNYRSVGNILAAANAVIQN 303 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + ++ S+ + ++ + + Sbjct: 304 NTDRLGKNL----------------------------RTDAEAGEKISFFAAYNDIAE-- 333 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I + Q I +L R + ++ Sbjct: 334 -----ADFIVNEIKELKRE----------NWQLNQIALLYRSNAQSRVLEQAL----FQA 374 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 IS + L +K +A R ++ DD + + ++ P I I Sbjct: 375 AISYKIYGGLRFYERLEVKHALAYLRLAINPNDDNALLRVINFPPRGIGTRSIENIQAAA 434 Query: 461 -HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + ++++ A K I+ + +L S + +L + + + Sbjct: 435 QQQNSSLWQA----AQGMGKKIAPFIELVEQLRGQVGVVSLAELVKSVLDLSGLIKHYQN 490 Query: 520 RFG---NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTIKRAH 565 + E ++ L+E +N E L E +I+ L Sbjct: 491 QKQISEQERVENLEELVNAATGFRVEDVQLDMLPENLADNPALPVIAFLSNAALESGENQ 550 Query: 566 SANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + + + V++MTVH AKGLE VF+ F + Sbjct: 551 AGSGDQAVQLMTVHAAKGLEFDAVFISGMEEGRFPSE----------------------- 587 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + + E RL+YV +TRA +L I Sbjct: 588 -----------LSMNEAGGLAEERRLMYVAITRARKRLYISMAQ 620 >gi|191637996|ref|YP_001987162.1| ATP-dependent DNA helicase [Lactobacillus casei BL23] gi|190712298|emb|CAQ66304.1| ATP-dependent DNA helicase [Lactobacillus casei BL23] gi|327382072|gb|AEA53548.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W] gi|327385216|gb|AEA56690.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II] Length = 751 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 120/699 (17%), Positives = 214/699 (30%), Gaps = 133/699 (19%) Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +A E+ +L+ P K + I K +L Q Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVDPQ---------- 158 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 TY ++ + + A Y++ + + LDF+DLI+ T L +K Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++ +I +DE QDT+ Q++++ L E + L VGD QSIY + GA Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + +L K+ K +I L ++RST IL+ + V +N Q + Sbjct: 265 QNILDFKKDYPK--------AQVILLEQNYRSTKTILSAANNVIQNNQNRQAKT------ 310 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 LW +++ + + + + A + RRI I+ Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + D +L R + I I D Sbjct: 346 DNHR-------------KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472 I+D +A R +++ EDD+SF ++ P + K+ ++ E Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAFANEHDWSLLEAAANA 448 Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526 A + K I +L + + + IL + E Sbjct: 449 ELSPIAGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTR 508 Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + L+E L+ T E + ++EL + EV +MT+H Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFLV +F Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 YVG+TRA +L + + + + + V Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGTT 652 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 S + + + P + +++ + Sbjct: 653 QPKS-DIPFINRTDRAFSSPYSRHADQKTATPVTVQAAP 690 >gi|319411282|emb|CBY91690.1| DNA helicase II [Neisseria meningitidis WUE 2594] Length = 735 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 S + IL + + ++ G + +D LDE +N + E +++ L E Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|317493212|ref|ZP_07951635.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918872|gb|EFV40208.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1191 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 142/1001 (14%), Positives = 309/1001 (30%), Gaps = 159/1001 (15%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ------------TQ 60 E + DL P + ++ + + ++ ET + + + Sbjct: 189 PEQLLADLQPYLHGELPMLRQAIA-DDETLTQRHQQIIERIDAVKAHWREVAGEIESLIV 247 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS---------------QD 105 SS FL + T + T E L ++LK+ Q Sbjct: 248 DSGVDKRSYSSRFLPKWLTTVGDWATSETRD--YQLPDELKRFGQNLLLEKTKKGTPPQH 305 Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 D+ + L + ++ K+++ L F+DL+ + L + Sbjct: 306 ALFVAIDQLLAEPLSLRDLLLSRALSEVRTSVQQEKRQHAQLGFDDLLSRLSQALNQSG- 364 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + I Q +IDE QDT Q+ + +++ K + S+ L +GD KQ+ Sbjct: 365 GDVLAQAIRQRYPVAMIDEFQDTDPQQYGIFQAIYLQPQSDKQSDSA---LLLIGDPKQA 421 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY+F GA+ + + + L ++RS+ +++ V++VFS E+ Sbjct: 422 IYAFRGADIFTYMYARSEVK----------HHYTLGTNWRSSPGMVSAVNQVFSAVESPF 471 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 ++ + +++ Q ++ W + L Sbjct: 472 LFADIPFLPVS--AAKKNQALRFEI--------AGDIQKAMHIWLQPGEGCGTVEYQQSL 521 Query: 346 ARRIAYTISNMIGTDTI------------FSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 A + A I + + + ++A DI +LVR R + L+ Sbjct: 522 AAQCAAQIRDWLTAGQQGKALLYTDKKDSLGREIAKPVEASDITILVRSRAEAALVRDAL 581 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 L SV ++R + +DL+ L + +L+ E + L + L + + Sbjct: 582 SAL---AIPSVYLSNRDNVFQTPEARDLLWLLQAVLAPEQERLLRSALATSLMGLNSQQL 638 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAK 511 ++ ++ E +++ + + ++Q V+ + E++ +L ++ Sbjct: 639 NEL----NQDERLWDALVDEFDAYRQQWQKQGVLPMLREIMGRRH------LAENLLASE 688 Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSAN 568 G ++ + E L + + L+ L +++ + ++ Sbjct: 689 GGERRLTDVL------HIGELLQEASLTLDSEPALLRWLAQQIDSPEVQSENQQLRLESD 742 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V+++T+H +KGLE P+V+L GS + + + Sbjct: 743 RHLVQVVTIHKSKGLEFPIVWLPFIGSYRLQKQPLYHDRD-------------SFNAVLD 789 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII------CKHSNTSNEKKSNQRTWY 682 N D +K ++ E RLLYV +TR+ + E + Sbjct: 790 LNYSDDAVKLAEEERLAEDLRLLYVALTRSVYHCSLGLAPLFLGGRKKQGETDVHNSAIG 849 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIP 740 ++ D + L N D + + T E +E +L + Sbjct: 850 HLLQKGEPGDAAMLLACLERLQNDDILVTTVEAQDGSPWVATAQEAQELQAKLFTRKMQD 909 Query: 741 KKLFSPIK----------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790 + D+ ++ + + + G +H LL Sbjct: 910 DWRVTSYSGLQQHGSSQFLDLLPKLDVDAVGESEVESIPALTPHTFPKGAAPGTFLHSLL 969 Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LEN--PMMTTAMSCDSYS 847 + + + + L +I R L P + + Sbjct: 970 EPMDFTQPRDITGLTEQVTQQGLNTEWVPVLDSWLDAILRAPLAESGPCLAQLAPSQVQA 1029 Query: 848 EVSVSGKINCPKK--------------------------DIIISGRIDQISISQQNIFIF 881 E+ I + ++ G ID + Q ++ Sbjct: 1030 ELQFYLPIEQLVRSAELDALIKRYDPLSAQCAPLDFRQVRGMLKGFIDLVFFWQGRFYVL 1089 Query: 882 EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913 +YK++ + + Q +Y L Sbjct: 1090 DYKSNWLGEDASAYTQEAMVAAMAEHRYDFQYQLYSLALHR 1130 >gi|300950421|ref|ZP_07164344.1| DNA helicase II [Escherichia coli MS 116-1] gi|300450267|gb|EFK13887.1| DNA helicase II [Escherichia coli MS 116-1] Length = 689 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 140 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 196 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 197 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 241 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 242 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 277 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 278 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 316 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 317 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 369 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 370 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 429 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 430 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 489 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 490 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 549 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 550 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 575 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 576 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 618 >gi|325283117|ref|YP_004255658.1| UvrD/REP helicase [Deinococcus proteolyticus MRP] gi|324314926|gb|ADY26041.1| UvrD/REP helicase [Deinococcus proteolyticus MRP] Length = 767 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 114/743 (15%), Positives = 223/743 (30%), Gaps = 134/743 (18%) Query: 1 LKNRFGLSLNESYE-----LIYKDLWPLPYFQVSDINK-YVSLSMETGNPTILKKAQT-- 52 L N +G+ E ++ V + ++ ++S G + + Sbjct: 75 LINHYGVDAGEILAVTFTNKAAAEMRERAGRLVPEADRLWMSTFHSAGVRILRAYGEHIG 134 Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L++ +++ +L + L ++ K + + Sbjct: 135 LKRGFVIYDDDDQLDILKQITGGMSG-----FGPDTNLRAVRGLIDRAKSNLE----TPA 185 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + L YE KK +DF DLI T L ++ + K Sbjct: 186 QMERSGEPYLAGIPRELMAETYRQYEARKKAQNAIDFGDLITETVRLFQE---VPAVLDK 242 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + I +DE QDT+ Q+E+ R L S L VGD QSIY F GA Sbjct: 243 VQNRARFIHVDEYQDTNKAQYELTRLLA----------SRDSNLLVVGDPDQSIYRFRGA 292 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + +L ++ + L ++RS+A++LT +++ + Sbjct: 293 DIQNILDFQKDYP--------DAKVYRLESNYRSSANVLTAANRLIENNAERLDKTLRPV 344 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 H + D + +A Sbjct: 345 KEGGH----------------------------PVVFHRASDHRGEGD-------FVADW 369 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 ++ + G D+ VL R + +I R I Sbjct: 370 LTRLHGEGR----------SFSDMAVLYRTNAQSRVIEESLR----RVGIPARIVGGVGF 415 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQ 471 D IKD+++ R L+ DD++ ++ P + + + + R +V E Sbjct: 416 YDRREIKDILSYARLALNPADDVALRRIVGRPRRGIGDSSLARLLDWARANGVSVLEACA 475 Query: 472 KFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNE 524 + G +K + + A P F ++ G Sbjct: 476 RAEQDSVLERGANKATEFAALMAAMSEAADNYEPAPFLRFVMETSGYLDMLRQEGTEGQV 535 Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHT 579 ++ L+E ++ Q + ++ + + + + + V +MT+H Sbjct: 536 RLENLEELISAAEEWSQENQGTIGDFLDDAALVASVDDMRAAQENKGVPEDAVTLMTLHN 595 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVF+V + ++ Sbjct: 596 AKGLEFPVVFIVGVEEGLLPSRNSLN---------------------------------- 621 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 ++ EE RL YVG+TRA ++L + N ++N + + + E Sbjct: 622 ERGGIEEERRLFYVGITRAMERLFLTAAENRMQYGRTNAAEDSRFLEEIGQDFETWNSFG 681 Query: 700 LTNSINKDEWIAYEWSTHHPENT 722 + W + + + Sbjct: 682 QPVDYKQKTWKDFRPAAVPQVSA 704 >gi|325962273|ref|YP_004240179.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans Sphe3] gi|323468360|gb|ADX72045.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans Sphe3] Length = 830 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 112/715 (15%), Positives = 212/715 (29%), Gaps = 140/715 (19%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + S + + + L+ + Sbjct: 119 AAAEMRERIEALVGGRAKIMWISTFHSSCVRILRQEAANV-----GLKSNFSIYDSADSL 173 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+K + I K LK +L + Sbjct: 174 RLVTQVSKGLDLDPKK-FAPKAIQHKISALKNELIDV----------DSYASAANYNDPF 222 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + ++ +DF+DLI T + + + + H+L+DE Q Sbjct: 223 EQAVADVYKGYTQRLRQANAMDFDDLIAETVYMFRAFPA---LAESYRRRFRHVLVDEYQ 279 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R + L VGD QSIY+F GA+ + ++ ++ Sbjct: 280 DTNHAQYALVREIV-------GQGPGASELTVVGDSDQSIYAFRGADIRNIVEFEKDYP- 331 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + I+L ++RST +IL+ + V S N + H+ G Sbjct: 332 -------EARTIKLEQNYRSTQNILSAANSVISRNPNRPEKRLWTAEGEGHKII-----G 379 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 V + A+ IA I + D Sbjct: 380 YV------------------------------GENEHDEAQFIAKEIDRLQDED------ 403 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++ D+ + R + I + + + IKD +A R Sbjct: 404 ---NLRPGDVAIFYRTNAQSRSIEDVL----VRVGLPYKVVGGTRFYERKEIKDALAYLR 456 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479 +++ +DD++ +L P + + T + + A+ + Sbjct: 457 VLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAALAQRERTSFMAAARRADQAPGMATRSVN 516 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 +K + +L +A +L S + ++ L E + Sbjct: 517 AVLGFVKLLDDLAEVAAGSGAAAALEAVLEQTGYLATLRSSTDPQDESRVENLAELVAVV 576 Query: 537 LRNEQNSYSS-LQELISELEQYPPTIKRAHSANHN------------EVRIMTVHTAKGL 583 EQ + L+ + ++ + + + V +MT+HTAKGL Sbjct: 577 REYEQENPEGTLEAFLEQVSLVADADQIPDAPGADIDEAVAEAKRLGVVTLMTLHTAKGL 636 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL +F H+ Sbjct: 637 EFPVVFLTGMEHGLFPHQ----------------------------------RSATDPKE 662 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 E RL YVG+TRA +L + + S +S + + K+ Sbjct: 663 LAEERRLAYVGLTRARKRLYVTRSEVRSMWGQSQYNPASQFLEEIPAELLEWKRE 717 >gi|157960297|ref|YP_001500331.1| DNA-dependent helicase II [Shewanella pealeana ATCC 700345] gi|157845297|gb|ABV85796.1| DNA helicase II [Shewanella pealeana ATCC 700345] Length = 721 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 96/586 (16%), Positives = 189/586 (32%), Gaps = 116/586 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+++ + ++DF ++++ ++L + I HIL+DE QDT+ IQ Sbjct: 173 IYQIYQDSCDRAGLVDFAEILLRAHELWLNKPH---ILDHYQDRFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L S + VGD+ QSIY + GA+ + + + Sbjct: 230 YAWIRVLAG----------STANVMIVGDDDQSIYGWRGAQVENLHKFLADFPA------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RS+ +IL +++ + + G LW Sbjct: 274 --AQTIRLEQNYRSSGNILNASNELIANNPDRMGKK---------------------LW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ + + AR I I++ Sbjct: 310 ------TDDKDGEPIGLYCAFNEMDE-------ARFIVGRITDWQDEGGKLE-------- 348 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ I+ + IKD M R I ++ Sbjct: 349 --DCAILYRSNAQSRVLEEAL----LHKGIAYRIYGGLRFFERQEIKDAMGYLRLINNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + I T R + T++E + + + + Sbjct: 403 DDAAFERVVNTPTRGIGDRTLDIIRTTARQQEMTLWEASLRLLEEKVLNGRAANAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541 I + S H ++ + + + + + L+E + Sbjct: 463 DLIVAMRMDTDEQSLHRMTDHVIQTSGLKAMYEAEKSEKARARVENLEELVTAARSFVMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + + V++MT+H+AKGLE P+VF+ +F Sbjct: 523 EEIEDMGELNAFLSHAALEAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + +E RL YVGMTRA Sbjct: 583 QMAIDEG----------------------------------DRLDEERRLCYVGMTRAMQ 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 +L I + + + V + + +++ S Sbjct: 609 KLYITYAESRRIYGRESFARPSRFVKEIPEQYVQEIRMRTQVSAPA 654 >gi|325145300|gb|EGC67578.1| DNA helicase II [Neisseria meningitidis M01-240013] Length = 735 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 S + IL + + ++ G + +D LDE +N + E +++ L E Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|145219316|ref|YP_001130025.1| ATP-dependent DNA helicase PcrA [Prosthecochloris vibrioformis DSM 265] gi|145205480|gb|ABP36523.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeovibrioides DSM 265] Length = 728 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 101/552 (18%), Positives = 183/552 (33%), Gaps = 118/552 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y K+N LDF+DL+I +L + ++ + +ILIDE QDT+ Sbjct: 170 ASQIYELYARKLKENNALDFDDLLIKPLELFGNHPE---VLEELQELFRYILIDEYQDTN 226 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ V + L S R +F VGD+ QSIYS+ GA+ +L + + Sbjct: 227 RAQYLVTKMLA----------SRHRNIFVVGDDAQSIYSWRGADISNILNFQDDYE---- 272 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +L ++RST IL + V S + Sbjct: 273 ----DARTFKLVENYRSTGTILQAANSVISRNQRQIKK---------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 E V + E++ A ++ I + ++ Sbjct: 307 --ELVAKGATGEPLTLIEAFN-----------ERQEAEKVGEWIRKL---------SLEK 344 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + + + R + ++ R +++ IKD +A RF+ Sbjct: 345 QLDFRSFAIFYRTNAQSRVLEDTMR----QHRLPYKIFGSVSFYKRKEIKDAVAYLRFVQ 400 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK-----FANCGISKFQH 483 + D S + ++ P + I K+ R ++YE I+ + +S Sbjct: 401 NDRDSESLLRIINFPPRKIGDVSIGKLRDFARERGISLYEAIRCAPQGGYQQRLVSALSS 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I L IA+ + ++ + + E D L E L+ Sbjct: 461 FSSVIESLREIAETGTVYEVLNSLFVQTGLLSLLQAENTPESMARHDNLQELLSMARDFS 520 Query: 541 QNSYSS--LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ + L + + + + N V +MTVH +KGLE PVVF+ ++F Sbjct: 521 DHNPDAGMLGDFLENIALASD--YDETQESDNFVSLMTVHASKGLEFPVVFITGLEERLF 578 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + EE RL YV +TRA Sbjct: 579 P------------------------------------LNCYEPEQMEEERRLFYVAVTRA 602 Query: 659 SDQLIICKHSNT 670 +++ + + Sbjct: 603 REKIFLSWAQSR 614 >gi|148285059|ref|YP_001249149.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong] gi|146740498|emb|CAM81056.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong] Length = 716 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 105/554 (18%), Positives = 191/554 (34%), Gaps = 119/554 (21%) Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 +A+ + HY+ +K+ V+DF DL++ + + + + ++ IDE Sbjct: 160 PIYQVAQKIYQHYQTELQKSNVVDFGDLLLYNMKIFSEYPD---VLNFYQTKFKYVFIDE 216 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ +Q+ ++L + L VGD+ QSIYS+ GA + +L+ K Sbjct: 217 YQDTNNVQYFWAKALV----------NLHENLCCVGDDDQSIYSWRGANIENILKFKDDF 266 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + +I+L ++RST ILT + + Sbjct: 267 KN--------AKLIKLEQNYRSTNSILTAASSIICNNKYRHDKK---------------- 302 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW + Q + Y D AR I+ I +I S Sbjct: 303 -----LW------TNKQSDQPIRIVYCYNDREE--------ARFISSEIKKLITKSPNLS 343 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 I VLVR ++ I F D + I D++A Sbjct: 344 -----------IAVLVRSSSQAHVLEESF----FSNNIKYQVIGGFRFFDRMEIADMIAY 388 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFANCGISK--- 480 R +++ D+L+ ++ P + + I + E +++ I++ + + K Sbjct: 389 LRVLVNHNDNLALTRIINVPKRSIGPATLHTIKEYAQQHESSMFTAIEQILSKKLLKPQL 448 Query: 481 ---FQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 Q +I E + + +P +I Q ++ I+ + E + Sbjct: 449 ELTLQSLINKFKEWHSLYKAGYTPAKVTEIICEDSNYLQMLKDDKSSQSDRRIENIQEMI 508 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 L +S++E + + ++ +++ V +MT+H +KGLE VVFL Sbjct: 509 RAMLDY-----NSIEEFLEHTSLFLERDNGINAKDNSAVSLMTLHASKGLEFDVVFLPGL 563 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF H+ + EE R+ YV Sbjct: 564 EEGVFPHQKSLI--------------------------------AEDQRALEEERRIAYV 591 Query: 654 GMTRASDQLIICKH 667 G+TRA L I Sbjct: 592 GITRAKQSLYISYA 605 >gi|293407440|ref|ZP_06651360.1| DNA helicase II [Escherichia coli FVEC1412] gi|291425551|gb|EFE98589.1| DNA helicase II [Escherichia coli FVEC1412] Length = 722 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + +I + +IL+DE QDT+ Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---YILQHYRERFTNILVDEFQDTNN 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 350 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651 >gi|150398844|ref|YP_001322611.1| UvrD/REP helicase [Methanococcus vannielii SB] gi|150011547|gb|ABR53999.1| UvrD/REP helicase [Methanococcus vannielii SB] Length = 1016 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 149/907 (16%), Positives = 299/907 (32%), Gaps = 165/907 (18%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151 + D ++ ++ + ++ + ++ L YEE K+KN ++D++D Sbjct: 146 QFYDFLISPEELKNYVLGELEKTDDPELILELDKLHDL-SKFYMAYEEYKRKNDLIDYDD 204 Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211 ++ LLK V I+ ++ ++IL+DE QDT+ Q +I LT++ Sbjct: 205 MVAIACKLLKSNPV---IQKQLQNRFDYILVDEFQDTNYSQLYLINMLTKNGM------- 254 Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271 L V D+ Q IY F GA + + + I L +++RST +I+ Sbjct: 255 ----LTCVADDDQCIYQFRGAYLTNINQLEEYYP--------DLKKIPLEINYRSTENIV 302 Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 + ++ E + + ++ + ++ + S Sbjct: 303 NLSQELIKNNEKREKKT----------------------------VKSNKSSEEKVNVVS 334 Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391 D + A ++ + N+I + KDI +L RK D + Sbjct: 335 MPDDYSE-------AEWVSNEVQNLIKKG----------LTPKDIFILTRKTADGKKFSD 377 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 + + I + L D IKD ++ I + + + E Sbjct: 378 SLK----NRLIPSEYIGNYRLQDFPVIKDTLSYISAISDPFNSGIDFKKIFT-REGLFEH 432 Query: 452 DIFKICTQRHETET-------------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498 DI KI + E + + + + + + + + I+EL+ + Sbjct: 433 DIQKINKKAKELTYSNPEISGDGIFYVLEKNLSELNLENLEIAKSIFENINELLIYKKNH 492 Query: 499 SPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 P D +L K + + I++L+ ++ E + +E+ L Sbjct: 493 LPSDTLKHLLIEKTDIYKLEIHQNTLNSRKNIELLNSLISLVEEFESVRKTEFEEISEYL 552 Query: 555 E-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 ++ ++ V+IMT+H +KG E+ VF+ D + ++ KK +P Sbjct: 553 NILSDFEVEPEDFLENDTVKIMTIHQSKGKEAKAVFVCDVSERHLPLQYRKKEFTVPLDL 612 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + KK EE RLLYV MTRA D+L + S Sbjct: 613 QKG---------------IKKDNFDEKKLYLEEELRLLYVAMTRAKDKLYLTYPKIFSGN 657 Query: 674 KKSNQRTWY---------DMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENT 722 KK ++ + + D V + + + INK E+ + Sbjct: 658 KKESKPSLFLDGISYLQNDKVNFFETEKFEKPVMSVESPINKKISEYERLVIKYSVQKQY 717 Query: 723 PLEREETIK------------------------QLMDEQKIPKKLFSPIKNDINEPYILN 758 E I + D ++ + L + +++ + Sbjct: 718 KKAIESIITLVKINELEKSGNLSNFDLNDFLKIDIPDISELSELLTVKLPPLVDKSMKFS 777 Query: 759 PSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITS 807 S I L G +HK+ + + E S Sbjct: 778 ASKIKQYIGCPLNFKYNYVLNIPTPKKAHLTVGTDVHKIFEDLGILKNKGEAIDLELAKS 837 Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV-SVSGKINCPKKDIIISG 866 ++N K + ++ L+ + +++ + K N +G Sbjct: 838 MLSENLKEFSFNSKTEFEEEYSKSLKMIEYWFDFESKNKNKILATEEKFNLDLGGFTFTG 897 Query: 867 RIDQISIS-QQNIFIFEYKTHH-----HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920 ID+I ++ I +YKT P+ E + Q+++Y + + Y + Sbjct: 898 IIDRIDVTPDGEYIILDYKTGKKSSVLTKPKMAEDV------QMALYAMAVFEKYGKYPV 951 Query: 921 VCLLIYV 927 +YV Sbjct: 952 KMGQLYV 958 >gi|171920710|ref|ZP_02695904.2| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179010|ref|ZP_02964760.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024022|ref|ZP_02996781.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518328|ref|ZP_03003841.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524317|ref|ZP_03004355.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867968|ref|ZP_03079965.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273561|ref|ZP_03206097.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554036|ref|YP_002284945.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550706|ref|ZP_03771655.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551585|ref|ZP_03772531.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903451|gb|EDT49740.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209099|gb|EDU06142.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019050|gb|EDU57090.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998009|gb|EDU67106.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660157|gb|EDX53537.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660364|gb|EDX53624.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250081|gb|EDY74861.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541537|gb|ACI59766.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379400|gb|EEH01765.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379860|gb|EEH02222.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 743 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 104/615 (16%), Positives = 186/615 (30%), Gaps = 116/615 (18%) Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 + +L Q +K+ I ++ K +K K D + ++ Sbjct: 113 DADDQEVLLKEIFDQLSIEKKSPIIKKTIKMISKVKNKFFDQSDIMNE--KNRKYLEIVD 170 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 A + Y + K +DF+DLI T L + + K + ++IL Sbjct: 171 RNDA--QKLADIYTIYCDRCFKLNYVDFDDLINLTYKLFAEFPE---VLEKWQNKFDYIL 225 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT+ IQ+++I L + LF VGD Q IYSF GAE + Sbjct: 226 VDEFQDTNKIQYDLISLLAA----------KHQNLFVVGDPDQMIYSFRGAEQWIINNFN 275 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + + + L ++RST IL +++ N+ + + T H Sbjct: 276 QNFKN--------TKVTILKTNYRSTQPILDTANRLIDANNNSYKKNLTAFNTNDHN--- 324 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + + + + A IA T+ ++ T Sbjct: 325 ------------------------IPIYLRGQNQIDE-------ANWIARTVKELLEEGT 353 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 A I +L R + I I + IKD+ Sbjct: 354 P----------ANQIAILFRSNHYSRTIEQSM----MRESIPYTILGSKKFYERAEIKDM 399 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG--- 477 +A + + + D+LSF+ ++ +P + + ++E + + Sbjct: 400 IAYLKVV-NDLDELSFLRIINTPRRAIGPTTFEHVKHYAINNNLFLFEALAEVEKNHLIN 458 Query: 478 ---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFL 533 + + I E+ + H+ LI + + + ID + E Sbjct: 459 NTQKKNILNFVNLIKEIRDEMEDLKLHEVLELIYKKVNYEAYLLENERAEDKIDNVSELK 518 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + L + + + V +MTVH +KGLE VF+V Sbjct: 519 RAMKMYVDRHPDD--TINDYLNSIALYLNKDSKDSKENVLLMTVHNSKGLEYENVFVVGM 576 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + EE R+ YV Sbjct: 577 NEGHLPSDRAIDDDPI--------------------------------KGVEEERRIAYV 604 Query: 654 GMTRASDQLIICKHS 668 +TRA L I Sbjct: 605 ALTRAKKNLYISSAC 619 >gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402] Length = 674 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 92/592 (15%), Positives = 184/592 (31%), Gaps = 120/592 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 K L Y+E K +DF+DLI+ + K+ + + + +I++DE QDTS Sbjct: 161 KALYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPE---VLAEYRERYRYIMVDEFQDTST 217 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ ++ + + + + VGD+ QSIYS+ GA + + ++ + Sbjct: 218 QQYNFMKLIAD------------KNICVVGDDDQSIYSWRGASFENIRNFEKDFPEMIE- 264 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I+L ++RST IL + V S N + + S +++ Sbjct: 265 -------IKLEQNYRSTGTILAAANGVISHNVNRKVKALWSE---------KDSGRPIEI 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + A I+ I ++ + Sbjct: 309 FIP--------------------------ENEAAEADFISDMILSLKQRE---------G 333 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + D VL+R + + + I + IKDL++ R + + Sbjct: 334 FKYSDFGVLIRANSLSRPLEESF----LEVNIPYRMSGGTSFFQRKEIKDLISYLRVVAN 389 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK---------F 481 +DD++ + ++ +P + + + E + + Sbjct: 390 PDDDVNLLRIINTPRRGIGKKTLETLSALATENSCSMRTAIRLLLENPPEDMRGKSIEDL 449 Query: 482 QHVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFG------NEVIDVLDEFLN 534 + + I + +L + I+ + + ++ FL+ Sbjct: 450 KEFAELISAHRTQLLSGKGLAQKVRKLLDDIAYNEYLIAEYQKSEKAAQFKMMNIESFLH 509 Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 E N + L L + + EV IMT+H++KGLE PVVF+ Sbjct: 510 SMDDWENNPDNWDASLYDYLNRITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAE 569 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + H EE RL YV Sbjct: 570 DGLIPHARSV---------------------------------EENDGDIEEERRLFYVA 596 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 +TRA +L I + + + + + + + Sbjct: 597 ITRAQQKLFITSCRQRRKQGGITECAPSPFLDEIPADLVEYHEPDAQAEEER 648 >gi|256831910|ref|YP_003160637.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603] gi|256685441|gb|ACV08334.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603] Length = 833 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 119/790 (15%), Positives = 232/790 (29%), Gaps = 137/790 (17%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + P ++ + S + A L+ + Sbjct: 108 AAAEMRERVIQIVGPSAQRMW--VSTFHSTCVRI--LRAHASALGLKSTFSIYDSADSQR 163 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL + P K + + ++ LK++L D + + Sbjct: 164 LLGLVVRELELDP-KRFTPKGVAQRISGLKDELMTPADHL-----------VRAGSNDYE 211 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y++ LDF+D+I+ T DLL++ +R + HIL+DE QD Sbjct: 212 VMIGRIFERYQQRLATAHALDFDDIIVRTVDLLRQFPE---VRDHYQRRFRHILVDEYQD 268 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +IR L G L VGD QSIY+F GA + +L ++ + Sbjct: 269 TNHAQYALIRELVGTDHDGLTASE----LTVVGDSDQSIYAFRGASIRNILEFEQDYPQ- 323 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL+ + V S + + Sbjct: 324 -------ARTILLEQNYRSTQTILSAANAVISRNNDRRPKK------------------- 357 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + P + + AR IA I +++ Sbjct: 358 --LW------TAAGDGPAIVGYV--------GDTEHDEARWIAREIDSLMDK-------- 393 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 ++ D+ V R + + + + + IKD++A Sbjct: 394 -HGVRPGDVAVFYRTNNQSRALEEVL----IRVGLPYKVVGGTRFYERKEIKDVLAYLHA 448 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISK 480 + + +DD++ ++ P + I + + +++ Sbjct: 449 VNNSDDDVNVRRIINVPKRGLGDRSEAVIAQFAAAHDISFADALRRIDTIPGLTARSTKP 508 Query: 481 FQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + + P + IL + + ++ L E Sbjct: 509 ARAFAQLLDTWQQNVDQGVGPAGLISAILDDTGYLELLRDSEDPQDQSRVENLAELHAVA 568 Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSA----------NHNEVRIMTVHTAKGLES 585 + E+ L + + S + + +MT+HTAKGLE Sbjct: 569 MEYEKEDPEGGLGGFLERVSLVADADSVPSSDDAGHEDTPVVDPGVITLMTLHTAKGLEF 628 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 PV FL F H + L S Sbjct: 629 PVAFLTGLEDGTFPH----------------------------------MRALLDDSELS 654 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 E RL YVG+TRA ++L + + + S + + + + + R + Sbjct: 655 EERRLAYVGVTRARERLYLTRATTRSAWGSAQQFPPSRFLDDIPAELIEWRRQYSTTEVL 714 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 +N + + ++ + + + + P D Sbjct: 715 MNSGSRSGSSGYSGDRSRALRDDDDFGAPIGSGRSQGLPAWKKSAAAPPPARVGAPQAKD 774 Query: 764 TKGKTNLESL 773 L Sbjct: 775 EADIPVLRQG 784 >gi|188582350|ref|YP_001925795.1| UvrD/REP helicase [Methylobacterium populi BJ001] gi|179345848|gb|ACB81260.1| UvrD/REP helicase [Methylobacterium populi BJ001] Length = 1047 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 158/901 (17%), Positives = 286/901 (31%), Gaps = 97/901 (10%) Query: 1 LKNR--FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58 L+ R + S ++ + E TI+++ + A Sbjct: 195 LRRRPTLAAPPVSPLDGCLTTFRQAAADFASFMDGAAAA--EPETVTIVERLAEMATAVA 252 Query: 59 TQCIEERFSLLSSFFLTQKFTPQKNIITQE---------------------INKKSPDLK 97 + L LT + P ++ T+ L Sbjct: 253 NGPDPATPAGLVR-LLTARPHP--DLCTKAGAFASYRKKGKWAAAAKEAGLSKADGDRLN 309 Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 + + + A + A+ + Y + K+ + LDF+DLI Sbjct: 310 DAAETHYTACCDAWVALVQAAAGHALAALIDEARPILQRYRDHKRASAQLDFDDLIFAAR 369 Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT----HSSP 213 DLL+ D +R + Q H+L+DE QDT +Q E+ L + G + P Sbjct: 370 DLLRDHDA---VRRALGQRFAHVLVDEFQDTDPLQTEIFWRLCGEPVDGDDDWIWFQIRP 426 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 LF VGD KQ+IY F GA+ ++ + + + + ++ + +FRS A ILT Sbjct: 427 GALFLVGDPKQAIYRFRGADVGAYVQARDAFRAQNPGS-----LLSISTNFRSCASILTF 481 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 V++ F +A GQ G L + + Sbjct: 482 VNERFEAVLSA-----------------DGQPGFTALDPFHDDRGGLCVAALDIAVADEN 524 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITF 391 E A IA + +I + I +G +R Q DI +L + Sbjct: 525 GKASAERQRDAEADAIAELCARLIESHPIVDRRSGSERPCQPGDIALLAPTGAELWRYEE 584 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 I V L I+DL+AL R + + D L+ +L+ PL +E+ Sbjct: 585 ALE----RRGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLVGLTEE 640 Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKF------QHVIKYIHELIHIAQFCSPHDFFT 505 ++ I +E + I + + VI+ + L +PH+ + Sbjct: 641 ELLDIIWGLPRSEERPDRIPRLDLSIDPAVIAHPLAREVIERLQSLSRRGNSTTPHELLS 700 Query: 506 LILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSL-QELISELEQYPPTI 561 + + R + R + +D +L+ + + + + + + Sbjct: 701 HAVDVMRVRPLLLERHRGQAERALANIDLYLSLSTGYAVRGLRAFAEAMTAAWSDEARAV 760 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + A V + T+H AKGLE P+V V+T + V + + + D + Sbjct: 761 EGRPDAQEEAVALFTMHAAKGLEWPIVIPVNTMTGVMAPDNA--------VVDRQTETFF 812 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 P + K E RL YV TRA + L++ + ++ W Sbjct: 813 CPVLGIPPEGYETAREAEKDELDRERIRLWYVAATRARELLVL-----PRLDTTPSKSAW 867 Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 +V S + +L + T E + + + Sbjct: 868 IGLVDLSLAELPGLDVSQLPAGLTATGAGVGNTQTRASFAAEAETIAAAQTRLTWLAPSR 927 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801 + E L + D LE+ RGLI+HKL++ + T + Sbjct: 928 DENAAGTVLREEEAALWTGSAD-DQPPELEAAAFVQGGRERGLILHKLMEEVLTGETLEA 986 Query: 802 KNFITSYCTKNAKLWPAKEYK---------NLLLSITRLLENPMMTTAMSCDSYSEVSVS 852 + +T + L + R L P + +E V Sbjct: 987 EAALTERAADLIRALGRSSVADPATGLSAQELAACVARTLALPDIAAL-RPGLLAEFPVY 1045 Query: 853 G 853 Sbjct: 1046 A 1046 >gi|220911705|ref|YP_002487014.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6] gi|219858583|gb|ACL38925.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6] Length = 837 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 115/776 (14%), Positives = 225/776 (28%), Gaps = 142/776 (18%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + S + + + L+ + Sbjct: 126 AAAEMRERIEALVGGRAKIMWISTFHSSCVRILRQEAANV-----GLKSNFSIYDAADSL 180 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P+K + I K LK +L D + Sbjct: 181 RLVTQVSKALDLDPKK-FAPKAIQHKISALKNEL----------IDADSYASDANYNDPF 229 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + ++ +DF+DLI T + + + + H+L+DE Q Sbjct: 230 EQAVAEVYKGYTQRLRQANAMDFDDLIAETVYMFRAFPA---LAESYRRRFRHVLVDEYQ 286 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R + + L VGD QSIY+F GA+ + ++ ++ + Sbjct: 287 DTNHAQYALVREIVGEG-------PGASELTVVGDSDQSIYAFRGADIRNIVEFEKDYPE 339 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I+L ++RST +IL+ + V S N + H+ G Sbjct: 340 --------ARTIKLEQNYRSTQNILSAANSVISRNPNRPEKRLWTAEGEGHKII-----G 386 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 V + A+ IA I + D Sbjct: 387 YV------------------------------GENEHDEAQFIAKEIDRLQDED------ 410 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 ++ D+ + R + I + + + IKD +A R Sbjct: 411 ---NLRPGDVAIFYRTNAQSRSIEDVL----VRVGLPYKVVGGTRFYERKEIKDALAYLR 463 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQH-- 483 +++ +DD++ +L P + + E + ++ + Sbjct: 464 VLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAALASRERISFMAAARRAEQAPAMATRSVN 523 Query: 484 ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 +K + +L +A +L S + ++ L E + Sbjct: 524 AVLGFVKLLDDLAEVAAGSGAAAALEAVLEQTGYLAGLRSSTDPQDESRVENLAELVAVV 583 Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHN------------EVRIMTVHTAKGL 583 EQ + SL + ++ + + + V +MT+HTAKGL Sbjct: 584 REYEQENPEGSLGAFLEQVSLVADADQIPDAPGADIDAAVAEAKRLGVVTLMTLHTAKGL 643 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVVFL +F H+ Sbjct: 644 EFPVVFLTGMEHGLFPHQ----------------------------------RSATDPKE 669 Query: 644 QEEYNRLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E RL YVG+TRA +L + + N + + N + + + + + + Sbjct: 670 LAEERRLAYVGLTRARKRLYVTRSEVRNMWGQSQYNPASQFLEEIPAELLEWKREGTSRQ 729 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 + + +S +P + E + Sbjct: 730 AAWGGGSISSGRYSGSFWGAGTSRGAAADPSAGFNADVPAAIARNRVQPQKEIIAV 785 >gi|157144441|ref|YP_001451760.1| DNA-dependent helicase II [Citrobacter koseri ATCC BAA-895] gi|157081646|gb|ABV11324.1| hypothetical protein CKO_00155 [Citrobacter koseri ATCC BAA-895] Length = 720 Score = 281 bits (718), Expect = 5e-73, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R + Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLKDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANTLIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGIDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 I+ I L H ++ R + G I+ L+E + T + Sbjct: 461 FIELIDALAQETADMPLHVQTDRVIKDSGLRMMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEDCVEEVRLRAT 649 >gi|331655498|ref|ZP_08356491.1| DNA helicase II [Escherichia coli M718] gi|331046819|gb|EGI18903.1| DNA helicase II [Escherichia coli M718] Length = 722 Score = 281 bits (718), Expect = 5e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 350 ---TECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651 >gi|218560877|ref|YP_002393790.1| DNA-dependent helicase II [Escherichia coli S88] gi|218367646|emb|CAR05431.1| DNA-dependent ATPase I and helicase II [Escherichia coli S88] Length = 720 Score = 281 bits (718), Expect = 5e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|293417279|ref|ZP_06659904.1| DNA helicase II [Escherichia coli B185] gi|291431047|gb|EFF04042.1| DNA helicase II [Escherichia coli B185] Length = 720 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|209921291|ref|YP_002295375.1| DNA-dependent helicase II [Escherichia coli SE11] gi|209914550|dbj|BAG79624.1| DNA helicase II [Escherichia coli SE11] gi|324016210|gb|EGB85429.1| DNA helicase II [Escherichia coli MS 117-3] Length = 720 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|254464957|ref|ZP_05078368.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I] gi|206685865|gb|EDZ46347.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I] Length = 789 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 104/650 (16%), Positives = 196/650 (30%), Gaps = 117/650 (18%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 A Y+ ++ +DF DL+++ + + + + + +I++DE QDT++ Q Sbjct: 196 FYAQYQTRLRELNAVDFGDLLLHMVTIFQNHPD---VLEQYQRWFRYIMVDEYQDTNVAQ 252 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 253 YLWLRLLAG----------KHKNVCCVGDDDQSIYGWRGAEVGNILRFEKDFP------- 295 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++ L ++RST IL V + G +LW Sbjct: 296 -GAMVVRLEQNYRSTGHILAAAAGVIRGNQGRLGK---------------------ELW- 332 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + ++ ++D + AR I I M + + Sbjct: 333 ------TEAGDGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGQAPLG 374 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + +LVR + + + I+D MA R ++S + Sbjct: 375 LDQMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRIVVSPD 430 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVI 485 DDL+F ++ +P + I R ++ E + + G + + Sbjct: 431 DDLAFERIVNTPKRGLGDKAQQTIQGLAREHGVSLVEGARIAVESGQIKGKGGGALRELA 490 Query: 486 KYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + I +A + + +IL + + E ++ L E + E Sbjct: 491 EGIARWGRMAGDPDLTHMELAEIILDESGYTAMWQNDKTPEAPGRLENLKELVKALESFE 550 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L LE + +V IMT+H AKGLE P VFL +F Sbjct: 551 N--------LQGFLEHVSLVMDNDKQDADEKVSIMTLHAAKGLEFPAVFLPGWEDGLFPS 602 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + EE RL YVG+TRA Sbjct: 603 QRS--------------------------------MDESGLKGLEEERRLAYVGITRAEQ 630 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 I N + + + + V Sbjct: 631 ICTISFAGNRRVFGQWQSQLPSRFIDELPEEHVEVLTPPGLYGGGYGAAAPGAAMGAGQV 690 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + +E + + + + +++P ID ++ Sbjct: 691 RSSIEEKMAQADGYNSPGWKRMQARAGQRGLSQPKESKHQVIDLTATSSF 740 >gi|121595626|ref|YP_987522.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42] gi|120607706|gb|ABM43446.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42] Length = 816 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 101/617 (16%), Positives = 199/617 (32%), Gaps = 142/617 (23%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K+ ++ + + A L YEE ++ V+DF +L++ + +LL Sbjct: 167 KQLAYFIAGCKEEGMRPRDVPAHDADTRKKVELYQLYEEQCQREGVVDFGELMLRSFELL 226 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + D +R + HIL+DE QDT+ +Q+ ++ + D + ++ AVG Sbjct: 227 RDND---PVRAHYQRRFAHILVDEFQDTNKLQYAWLKQMAGDVV--DGRLHTQGSVLAVG 281 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + R + I+L ++RS ++IL + + S Sbjct: 282 DDDQSIYAFRGARVGNMQDFVREFDVQ--------HQIKLEQNYRSYSNILDSANALISH 333 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + +T G V+++ + + Sbjct: 334 NSRRLGKNLRTTQ---------GPGEPVRIY--------------------------EAN 358 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 S A+ + I ++ + K+I VL R + +I + Sbjct: 359 SDLAEAQWMVDEIKQLVRDGEMP---------RKEIAVLYRSNAQSRVIESAL----FNA 405 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 + + IK +A R + + DD SF+ ++ P + + Sbjct: 406 SVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFPPRGIGARTLEVLQDAA 465 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 R ++++ + + + + L Q + +L + + + Sbjct: 466 RSSGCSLHDAVSAVPGKAGTNLGAFVALVQVLREQTQGQNLRGIIGQVLESSGLLEHYRH 525 Query: 520 RF-GNEVIDVLDEFLNFTLRN--------------------------------------- 539 G + ++ LDE +N Sbjct: 526 EKEGADRLENLDELINAAESFVTQEGFGRDAVALPLDEHGNALTQSPASQGLDPDAPMLN 585 Query: 540 -----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + ++ +L L + L A + V++MTVH +KGLE VF+ Sbjct: 586 APGNVDADTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGM 645 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F H++ + EE RL+YV Sbjct: 646 EEGLFPHENS----------------------------------MSDRDGLEEERRLMYV 671 Query: 654 GMTRASDQLIICKHSNT 670 +TRA +L + Sbjct: 672 AITRARKRLYLSHSQTR 688 >gi|301066102|ref|YP_003788125.1| superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang] gi|300438509|gb|ADK18275.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang] Length = 751 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 121/699 (17%), Positives = 214/699 (30%), Gaps = 133/699 (19%) Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +A E+ +L+ P K + I K +L + Q Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVEPQ---------- 158 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 TY ++ + + A Y++ + + LDF+DLI+ T L +K Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++ +I +DE QDT+ Q++++ L E + L VGD QSIY + GA Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + +L K+ K +I L ++RST IL+ + V +N Q + Sbjct: 265 QNILDFKKDYPK--------AQVILLEQNYRSTKTILSAANDVIQNNQNRQAKT------ 310 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 LW +++ + + + + A + RRI I+ Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + D +L R + I I D Sbjct: 346 DNHR-------------KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472 I+D +A R +++ EDD+SF ++ P + K+ ++ E Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAFANEHDWSLLEAAANA 448 Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526 A + K I EL + + + IL + E Sbjct: 449 ELSPIAGKARGQLAKFGKMIQELGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTR 508 Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + L+E L+ T E + ++EL + EV +MT+H Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFLV +F Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 YVG+TRA +L + + + + + V Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGTT 652 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 S + + + P + ++ + Sbjct: 653 QPKS-DIPFINRTDRAFSSPYSRHAAQKTATPVTVQAAP 690 >gi|298369602|ref|ZP_06980919.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314] gi|298282159|gb|EFI23647.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314] Length = 735 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 98/549 (17%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------IFAVGDDDQSIYRFRGAHVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANTVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D A+ I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ L + Sbjct: 467 QVGQMPLPEIIVGILKDSGLTEHYRAQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPD 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDAPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|325130964|gb|EGC53691.1| DNA helicase II [Neisseria meningitidis OX99.30304] Length = 735 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 S + IL + + ++ G + +D LDE +N + E +++ L E Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|82779008|ref|YP_405357.1| DNA-dependent helicase II [Shigella dysenteriae Sd197] gi|309784529|ref|ZP_07679167.1| DNA helicase II [Shigella dysenteriae 1617] gi|81243156|gb|ABB63866.1| DNA-dependent ATPase I and helicase II [Shigella dysenteriae Sd197] gi|308927635|gb|EFP73104.1| DNA helicase II [Shigella dysenteriae 1617] Length = 720 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTCQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|299140726|ref|ZP_07033864.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735] gi|298577692|gb|EFI49560.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735] Length = 761 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 109/662 (16%), Positives = 206/662 (31%), Gaps = 123/662 (18%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + + K + Y++ +K +DF+DL++ L K+ D Sbjct: 151 LPDLYAQDQAALKRDNHNHQPEIYK-IYQTYQQRCQKANAMDFDDLLVLIWRLFKEHDD- 208 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 IR K + ++L+DE QDT+ +Q ++ LT++ R + VGD+ QSI Sbjct: 209 --IRKKYAERFKYVLVDEYQDTNFVQQCIVLQLTQE----------HRRVCVVGDDAQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y F GA +L ++I + + +L ++RST I+ + + + Sbjct: 257 YGFRGANIDNILDFQKIYPE--------TKLFKLEQNYRSTQHIVQAANSLIQHNK---- 304 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 I G + V S + A Sbjct: 305 ------RQIPKDVFSCNDKGERLILRPVYSDKE-------------------------EA 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I + + +L R + R I Sbjct: 334 AVVCRYIKRLKQKE---------DFNYDSYAILYRTNSQSRSFEEEMR----KQSIPYRI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465 IKD++A R + + ED+ + ++ P + + KI + + Sbjct: 381 FGGMSFYQRKEIKDILAYFRMVANPEDEEAIRRIINYPTRGIGDTTVAKIAACAQANDVS 440 Query: 466 VYE-------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++ Y N ++K + + I I + + T I+ K Sbjct: 441 FWQIVNSPVKYGLNVTNSTVNKLRSFAELISSFIEKSASTDAYQLGTAIIQESKINADIF 500 Query: 519 SRFGNE---VIDVLDEFLNFTLRN-------EQNSYSSLQELISELEQYPPTIKRAHSAN 568 S E + ++EFL+ Q Y+ L + + E+ + Sbjct: 501 SSNDPEALSRQENVEEFLSGLQDFVEGRREEGQEEYTGLTDFLQEVSLLTDVE-SDDDKD 559 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N+V +MT+H+AKGLE PVVF+V +F Sbjct: 560 GNKVSLMTIHSAKGLEFPVVFIVGMEENIFPSPMSANNPRELEEERRLL----------- 608 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 YV +TRA I+ N K ++D Sbjct: 609 -----------------------YVAITRAEKYCILTCAKNRWRFGKLEFGAPSRFLHDI 645 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + R++ LT+ I I ++ R + ++ + + +P+ Sbjct: 646 DPSFLRIENDNLTDDILFKNSIPKSAKPTTGIHSSPLRPARVGPIVPKSISKEPSKTPVL 705 Query: 749 ND 750 Sbjct: 706 TP 707 >gi|298383180|ref|ZP_06992774.1| DNA helicase II [Escherichia coli FVEC1302] gi|298276416|gb|EFI17935.1| DNA helicase II [Escherichia coli FVEC1302] Length = 722 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + +I + +IL+DE QDT+ Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---YILQHYRERFTNILVDEFQDTNN 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 350 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 463 FMELIDVLAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651 >gi|51893964|ref|YP_076655.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51857653|dbj|BAD41811.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 825 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 121/787 (15%), Positives = 225/787 (28%), Gaps = 130/787 (16%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + P + +++ + E Sbjct: 107 AAAEMRERVEQLVGPRA---REVWAATFHSTCVRMLRRDIERLGYGRNFVIL--DAEDQQ 161 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 + L + ++ + + K + + R + Sbjct: 162 AVIRDCLKRLGLSERQFQPGAVLGTISNAKNAM---------LDPRRFADRAGDYWR--- 209 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + A Y+E + LDF+DL++ +LL++ D +R ++ +IL+DE QD Sbjct: 210 QQVAKVYALYQEQLRSGNALDFDDLLLKAVELLERFDD---VREYYQRKFEYILVDEYQD 266 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ +Q + L + + L VGD+ Q IYS+ GA+ +L + Sbjct: 267 TNHVQNRWVFLLAGE----------KQNLAVVGDDDQGIYSWRGADISNILEFEAQFP-- 314 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I+L ++RST +IL+ V + R G Sbjct: 315 ------GCRTIKLEQNYRSTQNILSAAYAVVRHNTGRKEK----------RLWTAAGPGD 358 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + D A +A + ++ Sbjct: 359 PVYHFTAADERD-------------------------EAAFVAREVERLVAEGLPDGTR- 392 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +D VL R + + I + IKD++A R Sbjct: 393 ---LDYQDFAVLYRTHAQSRALEEAM----VRRSIPYGIYGGLRFFERKEIKDVLAYLRI 445 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480 I + D +SF + P + K+ + + + + + Sbjct: 446 IANPADIVSFRRAVGVPKRGIGPATVDKLVDYAEQWQVPVALAALDCSMVPGLSGTYQKR 505 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537 + I EL +++ C+ +L ++ + E + + E + Sbjct: 506 MEEFGALIEELTNLSAHCTVGQLIDAVLERTGILEELRADTSLEAAARLENVQELRSMAA 565 Query: 538 RNE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 E L++L S L T N+V +MT+H+AKGLE PVVFLV Sbjct: 566 EFEPPAGEELDGLRDLDSFLATVALLTDADQVGEGQNKVTLMTLHSAKGLEFPVVFLVGL 625 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 VF H + EE RL YV Sbjct: 626 EEGVFPHNRALT----------------------------------DEVQMEEERRLCYV 651 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYD-MVYDSFHNDERVKKIKLTNSINKDEWIAY 712 GMTRA +L + + + +SN ++ E V + + W Sbjct: 652 GMTRARLRLYLTNAVSRNLWGQSNYNAPSRFLLEIPAELVEEVTPAAGASGPRRSAWDDG 711 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + ++ FSP + + E Sbjct: 712 AAWEDAGAAVRRPAWDGGARAARRREWEDDDFSPAIGAAGWGRTAQARRLQKALEPPSEE 771 Query: 773 LLSDNQT 779 Sbjct: 772 TPQFQPG 778 >gi|331649638|ref|ZP_08350720.1| DNA helicase II [Escherichia coli M605] gi|331675280|ref|ZP_08376031.1| DNA helicase II [Escherichia coli TA280] gi|331041508|gb|EGI13656.1| DNA helicase II [Escherichia coli M605] gi|331067566|gb|EGI38970.1| DNA helicase II [Escherichia coli TA280] Length = 722 Score = 281 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 350 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651 >gi|289523886|ref|ZP_06440740.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502542|gb|EFD23706.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1191 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 149/898 (16%), Positives = 287/898 (31%), Gaps = 88/898 (9%) Query: 75 TQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 +K + + LK + E + ++ L A L Sbjct: 312 KGGGKFKKELESLLSDRFGHKGLKIHRESLSQEVALAKWSKEAHEDRPLRETLLKFASML 371 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A +EE KK+ +L F+DL+ D++ K + + +IL+DE QD + +Q Sbjct: 372 WALWEEQKKRKNILSFDDLLTKAKDMVNKYPKAV-------ERYKYILVDEFQDINGVQN 424 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 +I+++ LF VGD KQSIY F A+ + +K Sbjct: 425 LLIKNIAA-------GKEGATKLFIVGDLKQSIYRFRHADLRI---FADYIEK---AKSG 471 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + L SFR T D+L ++ +F + ++ + + + + + L Sbjct: 472 AGKYVALKESFRMTRDLLERINDLFEYIWKDGISSSLKEIYEPLVYPETLKNENSSGDLK 531 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + + + + LA ++A+ + Sbjct: 532 ILLETNAEDEDG----------NKASSAQRKNSLATKLAHRFRMFHEGG----------V 571 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 KD++VLV R +I V D+ D AL + + Sbjct: 572 FWKDMVVLVPTRN----YFDTLEEAFEREEIPAVFVDQRSFFSRSETLDATALLTALNNP 627 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491 EDD + + ML SP S++ + K + + + + I L Sbjct: 628 EDDFALIGMLSSPFLRLSQERVSKALSSIEGEGGEGRIWRYLKTN----LKGTAEKIEYL 683 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551 A P D +L S + ++F E L Sbjct: 684 RRRAILRGPSDVLNYLLEEPLWLLALPSNKRMRAFSNIRYLIHFLRGYEDAFGKDLAGAA 743 Query: 552 SELEQYPP-----TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L++ + + VRIMTVH AKGLE PVV + + Sbjct: 744 DYLKKTARLNAPYEEATPLGEDEDVVRIMTVHAAKGLEFPVVAVFGLEYARHPRSGSSLV 803 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 + + K+ + + +EE RL YV TRA LI+C Sbjct: 804 PSIFVGTVASSYGDPFDRKKNPPSKAAHDYLEG-LKQEEENLRLFYVACTRAKKHLILCG 862 Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 + ++ +++T + + N E ++ + I++ E I + S + L Sbjct: 863 NYEIDSQGNPSKKTGLWL--KTVLNWEGARRYADPDDIDEAEIITPKTSDAGSKKNKLSH 920 Query: 727 EETIK-----QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781 I + + + + K + P+ S + + Sbjct: 921 SRGISLKKLIRPIADSPLDKFSATEYALISWCPHAYRMSCRQGLPLKWELPRSEEYGGPD 980 Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLS-----ITRLLEN 834 G ++H +L E + F + + ++ P L + R L Sbjct: 981 VGSLVHWILSRWDLKEESLVRFFPENDENLERTLRMLPTGLRPILKDKSHWPLLQRWLTA 1040 Query: 835 -------PMMTTAMSC-----DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882 + +S +Y E+ ++ ++G+ID + + I++ Sbjct: 1041 FAGSFLGSTLRRILSSKDPEYKTYREIPFDFELES---GTRLAGQIDLLYLDDATAHIWD 1097 Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 YK + + QL Y + +P K+L+ L + E + ++ + Sbjct: 1098 YK--ITEDLDEGSFMELYRKQLEFYGYAVNREFPQKNLLMGLYMLRESREILLDAEDI 1153 >gi|170718056|ref|YP_001785094.1| DNA-dependent helicase II [Haemophilus somnus 2336] gi|168826185|gb|ACA31556.1| DNA helicase II [Haemophilus somnus 2336] Length = 726 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 108/550 (19%), Positives = 187/550 (34%), Gaps = 120/550 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++A ++ ++DF +L++ +L K I Q H+LIDE QDT+ IQ Sbjct: 177 IYKIYQDACDRSGLVDFAELLLRAYELWLKNPH---ILQYYQQRFQHVLIDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + I+ L S + VGD+ QSIY + GA+ + + R + K Sbjct: 234 YAWIKLLAG----------SQGNVMIVGDDDQSIYGWRGAQIENIHRFLKDFAK------ 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 II L ++RST +IL +++ S N G LW Sbjct: 278 --VKIIRLEQNYRSTGNILESANRLISNNSNRLGK---------------------DLW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + A ++ + N + Sbjct: 314 ------TAGEKGDPVGIYAAFNELDE-------ALFVSGQVQNWLDNGGKVD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I KI + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAF----LRAKIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ------HVI 485 DD +F ++ +P E + + R T+++ Q + + I Sbjct: 407 DDAAFERVVNTPPRGIGERTLDILRNLTRERQVTLWQATQLAIQENLIPIRSVTVLLRFI 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--- 539 + I+ L ++ + G++ I+ L+E + T Sbjct: 467 ELINSLQQETAEMPLFVQTDFVIKHSGLYDMYKQEKGDKGEVRIENLEELVTATREFIKP 526 Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E S L ++ +++ V++MT+H+AKGLE P VF+V +F Sbjct: 527 DEAEDMSDLVAFLTHTSLEAGEE--QAASHQPCVQMMTLHSAKGLEFPRVFIVGMEEGLF 584 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 585 PS----------------------------------FRSGEDLARLEEERRLAYVGITRA 610 Query: 659 SDQLIICKHS 668 +L +C Sbjct: 611 KQKLTLCYAE 620 >gi|89901806|ref|YP_524277.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] gi|89346543|gb|ABD70746.1| ATP-dependent DNA helicase UvrD [Rhodoferax ferrireducens T118] Length = 814 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 100/588 (17%), Positives = 191/588 (32%), Gaps = 143/588 (24%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ ++ V+DF +L++ + ++L+ D IR + HILIDE QDT+ + Sbjct: 192 EIYQLYEDQCQREGVVDFGELMLRSYEVLRDND---PIREHYQRRFRHILIDEFQDTNKL 248 Query: 192 QWEVIRSLTE---DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 Q+ I+ L + + + AVGD+ QSIY+F GA + R + + Sbjct: 249 QYAWIKMLAGTGAHSTADDASFNPTGCVLAVGDDDQSIYAFRGARVGNMADFVREFKVK- 307 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 I+L +FRS ++IL +++ S G + + G+ V Sbjct: 308 -------HQIKLEENFRSGSNILDSANELISYNTKRLGKNLRTAQG-------PGEPVRV 353 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + +S A+ + + ++ Sbjct: 354 F----------------------------EATSDFAEAQWMVEEMRQLVREG-------- 377 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 ++ K++ VL R + +I + I + IK+ +A R + Sbjct: 378 --MERKEVAVLYRSNAQSRVIETAL----FNAGIPYKVYGGLRFFERAEIKNALAYLRLL 431 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKY 487 + DD SF+ + P + ++ R ++ + + + + Sbjct: 432 ENPRDDTSFLRAVNFPPRGIGLRSLEQLQDVARASGCSLSDAVSGLGGKAGANIGAFLAG 491 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN------- 539 I L + +L Q + + R G + ++ L+E +N Sbjct: 492 IDVLREQTSGMKLSEIVERVLEHSGLIQHYKADREGADRVENLEELVNAAESFVSLENFG 551 Query: 540 ---------EQNS---------------------YSSLQE------LISELEQYPPTI-K 562 EQ L+ L + L Sbjct: 552 RDAAALPVDEQGHALTQSPASQGLDLSQPVLDEPVPDLETGETQSPLAAFLSHAALEAGD 611 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 A + +++MTVH++KGLE VF+ +F H++ Sbjct: 612 NQAQAGQDAIQLMTVHSSKGLEFDCVFITGIEEGLFPHENS------------------- 652 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + EE RL+YV +TRA +L + Sbjct: 653 ---------------MSDRDGLEEERRLMYVAITRARKRLYLSHSQTR 685 >gi|331644546|ref|ZP_08345666.1| DNA helicase II [Escherichia coli H736] gi|331679923|ref|ZP_08380586.1| DNA helicase II [Escherichia coli H591] gi|331036218|gb|EGI08453.1| DNA helicase II [Escherichia coli H736] gi|331072470|gb|EGI43802.1| DNA helicase II [Escherichia coli H591] gi|332105031|gb|EGJ08377.1| DNA helicase II [Shigella sp. D9] Length = 722 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 350 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651 >gi|329737718|gb|EGG73961.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU028] Length = 1046 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 110/600 (18%), Positives = 209/600 (34%), Gaps = 47/600 (7%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 307 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + +G I+L +FRS + Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 476 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL V + ++ Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 529 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ +I + Y+ I+ + K I+ I + + +Q Sbjct: 637 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + +K E RL+YV +TRA +QLI+ Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 876 >gi|187733738|ref|YP_001882507.1| DNA-dependent helicase II [Shigella boydii CDC 3083-94] gi|187430730|gb|ACD10004.1| DNA helicase II [Shigella boydii CDC 3083-94] gi|320176055|gb|EFW51124.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella dysenteriae CDC 74-1112] Length = 720 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|328948419|ref|YP_004365756.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] gi|328448743|gb|AEB14459.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] Length = 675 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 101/564 (17%), Positives = 180/564 (31%), Gaps = 122/564 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + L Y+ K +DF+DLI+ L K+ + +I++DE QD Sbjct: 161 DMYRSLYEEYQSGLKLFNSVDFDDLIVLPIKLFKENPE---VLEAYRNRFRYIMVDEFQD 217 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 TS Q+E++ L + + VGD+ QSIYS+ GA+ + ++ ++ Sbjct: 218 TSHQQYEMMHLLA------------NKNIAVVGDDDQSIYSWRGADFQNIINFEKDFP-- 263 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I L ++RST IL + V N + Sbjct: 264 ------DVTEIRLEQNYRSTGTILAAANGVIKHNTNRKDK-------------------- 297 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 +LW N + S + + A IA I Sbjct: 298 -ELW-------SGNGNGKPIELYSPENEAAE-------ADFIAEGI---------LGISV 333 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D VL+R + I + I + + IKD+++ R Sbjct: 334 DEKRNYDDFGVLIRANTQSRAIEEAF----LENNIPYTMSGGTSFFERKEIKDIISYLRV 389 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------ 480 I + +DD++ + ++ +P + I I +++E IQ + + Sbjct: 390 IANHDDDINLLRIINTPRRGIGKAAIESINKVASTMNFSLWESIQAILSSSEEECPVSEK 449 Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVLD 530 F+ I + ++ IS ++ Sbjct: 450 TKADFEVFSNIIENSKSMLSGKGLAKKVRALVDEINYFDYLISENPKSEKSARFKYMNIE 509 Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVV 588 + + E N L + L + + +V +MT+H +KGLE PVV Sbjct: 510 SLIKSMEQWENNPNYDDTSLYAYLNRITLISRDDMDDEQDKGKVNLMTIHASKGLEFPVV 569 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 F+ + H H ++ + EE Sbjct: 570 FIAGAEEGLMPHAH--------------------------------AVEEGGDAAIEEER 597 Query: 649 RLLYVGMTRASDQLIICKHSNTSN 672 RL YV +TRA D+L+I S+ Sbjct: 598 RLFYVAVTRARDRLLISSCSHRRK 621 >gi|262039829|ref|ZP_06013104.1| exodeoxyribonuclease subunit V beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042829|gb|EEW43825.1| exodeoxyribonuclease subunit V beta [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1178 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 130/872 (14%), Positives = 282/872 (32%), Gaps = 128/872 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + L + K++ L F+D++ ++ L+ D Sbjct: 309 LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I Q +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 368 ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ ++ + G + L ++RS+ ++ V+++FS+ +N Sbjct: 420 YAFRGADIFTYMKAR----------GDVAAHYTLDTNWRSSPGMVGSVNRLFSLSDNPFM 469 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 E ++ + G TV D+ P W D++ + +A Sbjct: 470 FHEIPFLPVKEAAKNKGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519 Query: 347 RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + ++ R +QA DI VLVR R + + + L Sbjct: 520 QLCATQIRDWLSAGQRGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + + L ++L+ L + +L+ E + + L + +F + DI + Sbjct: 578 -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + E ++ + V+ + L+ +L + G ++ Sbjct: 637 AWDALVEEFSEYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + E L L +E L + I+E + + + ++ + V+I+T+H Sbjct: 689 ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + ++ D G ++ Sbjct: 743 KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAVVLDLGQD-------------EASLEL 789 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E RLLYV +TRA + + S+ K N + E + Sbjct: 790 AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848 Query: 699 KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L + E W L E +++ D+ ++ Sbjct: 849 GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPRLSARELQRRIADDWRVTSYSGLQQ 908 Query: 748 K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 D+ ++ + + + + + G +H L + + Sbjct: 909 HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPEG 968 Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854 + A+ L + +L+ + + + D E++ Sbjct: 969 WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGPDIALNQLAARDKQVEMAFYLPIA 1025 Query: 855 ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 ++ + ++ G ID + + ++ +YK++ Sbjct: 1026 QLLTAECLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085 Query: 891 QEIEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117 >gi|225872585|ref|YP_002754040.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] gi|225792506|gb|ACO32596.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] Length = 1201 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 147/962 (15%), Positives = 305/962 (31%), Gaps = 90/962 (9%) Query: 22 PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81 + VS++ V ++ L TL++ S + E + L +F L + Sbjct: 263 AEGGWLVSELMAVVQYALRHRTDGELAALATLRELSASSSPEH-WKSLCAFLLKVDGEWR 321 Query: 82 KNIITQEI---------NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF----------KS 122 K+ ++ K+ +KL S + + ++ Sbjct: 322 KSFNVKDGIPPASKGPEAKQWKARLDKLMDSCRRTPGLLAAMQQIQTLPGVHYEDAQWET 381 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 + A + +DF ++ ++L + + + +++ HIL+ Sbjct: 382 LRHLFVALRRALAELRVVFAEYNQVDFLEISRAALEVLGQSESG----MRWSEQLRHILV 437 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDTS Q +++ SL E + RT F VGD QSIY F AE + R + Sbjct: 438 DEFQDTSRQQHQLLESLVEHWM-----PEDGRTFFLVGDPMQSIYLFRQAEVELFERVRE 492 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 ++L ++FRS A + ++ VF ++ Sbjct: 493 Q----GLGESLTAETLKLRVNFRSHARLTEPLNDVFE---------------PVFAATAG 533 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI--AYTISNMIGTD 360 V+ + + + + A R+ A T++ +I Sbjct: 534 AAGARVEFEASSAAVEEVATIYEPPLQVHAQLCSTDADAEQKRALRLTEAETVAEIIEQH 593 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + + + VLVR R I R I+ + L + D Sbjct: 594 AERIAAARAAGEEYRVAVLVRNRSHLAWIVPALR----RRGIAFRAVEIESLAARQEMLD 649 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI----CTQRHETETVYEYIQKFANC 476 LMAL R ++ D ++++ +L++P S +++ ++ + + Q A Sbjct: 650 LMALVRALVHPMDRIAWLSLLRAPWCGLSLEELHRLAGGDDAESSRHPMLELMQQNLARL 709 Query: 477 GISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFL 533 G V + + + A P + + ++ E + + F Sbjct: 710 GEEAQARVRRVLAVMERAAAARTRPGETASFSAWVERTWHALGGPLCLEGAERENAEVFF 769 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + + L S+ + + V+IMT+H AKGL VV + Sbjct: 770 SLLDEVSPDGAELLTREFSQKLERLFAQPDPAVSERCGVQIMTMHKAKGLGFDVVIVPGL 829 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPG-----IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 K + + PI S +++ + + + K ++ EE Sbjct: 830 ERGSGREKQPLVTSLQRPNPETGKDVFFVAPIGAKGSGTKDPLYAWVQKQKQQRYGEERK 889 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RL YV TRA +L + + EK + + ++ ++ E ++ + + + Sbjct: 890 RLFYVACTRARQELHLIGTATY-GEKGLRKPSAGSLLATAWPALEGAFEMAMPKAETERT 948 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 E+ P LE + ++ + + + +T Sbjct: 949 GEVIEFPAARPVPGVLEEIAAAAASGTRVRRLPLSAEWTLDEGKDARMEARALQSPGRET 1008 Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI----TSYCTKNAKLWPAKEYKNL 824 G ++H +L+ + R + ++ + Sbjct: 1009 CFRRPEGSRLARAVGQVLHTMLERMGAEIAAGRWDAAGFEVKVLRLLGDHALIQEQVREA 1068 Query: 825 LLSITRLLE----NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI------- 873 + + R+LE + + E S ++ + R D++ Sbjct: 1069 VREVLRMLEQCAADEEARWILGEHEGGESEPSWT-GRGPDGVLRTLRADRVFQAGARPLE 1127 Query: 874 -SQQNIFIFEYKTHHHVPQEIEH-----IPYTHIAQLSIYEKILKDSYP-NKSLVCLLIY 926 S ++I +YKT + E + QL Y ++L+ + N + L Y Sbjct: 1128 ASDGYLWIVDYKTSTPMGGESAEDFLRRERSVYAPQLQAYAQVLRTARGTNLPVRLALYY 1187 Query: 927 VS 928 Sbjct: 1188 PR 1189 >gi|218707447|ref|YP_002414966.1| DNA-dependent helicase II [Escherichia coli UMN026] gi|331665463|ref|ZP_08366362.1| DNA helicase II [Escherichia coli TA143] gi|218434544|emb|CAR15471.1| DNA-dependent ATPase I and helicase II [Escherichia coli UMN026] gi|331057361|gb|EGI29350.1| DNA helicase II [Escherichia coli TA143] Length = 720 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + +I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---YILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|91784462|ref|YP_559668.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400] gi|91688416|gb|ABE31616.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400] Length = 783 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 122/809 (15%), Positives = 231/809 (28%), Gaps = 171/809 (21%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ LI + W + + S ++ + L Sbjct: 28 GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + T + L + L K Q Sbjct: 88 FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ K +T L Y++ ++ V+DF +L++ +LL +R Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ +Q+ ++ L + ++FAVGD+ QSIY+F Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGE----------ANSIFAVGDDDQSIYAFR 254 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + R +I+L ++RS IL +++ + G + Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + ++ S A I Sbjct: 307 TD---------AGHGEPVRVY--------------------------ESATDSQEAGWIV 331 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +I T T +I +L R + I + I+ Sbjct: 332 EEIKALISTGT----------SRSEIAILYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + +K +A R I + DD +F ++ P I ++ R ++ Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARQYNCSMAAA 437 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 I A S I ++ Q S + ++ A + + + R G + ++ Sbjct: 438 IPYVAGKAGSSLAGFANLIGKMRAETQQMSLPETVEYVVRASGLSEFYQNEREGQDRLEN 497 Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543 L E +N Sbjct: 498 LQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTIVFDAPGIADPAQ 557 Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++ L L A V++MTVH AKGLE VF+ +F H+ Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ EE RL+YV +TRA ++ Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L + + ++ + K W + + + Sbjct: 644 LYLSFAQSRMLHGQTRYNIRS---RFFDELPQETLKWLTPKIEPGARWGGRSDNAGYGRD 700 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKND 750 T +P + Sbjct: 701 WFARPGYTGAASSTPAPLPAFANEQRAAE 729 >gi|157163290|ref|YP_001460608.1| DNA-dependent helicase II [Escherichia coli HS] gi|170022164|ref|YP_001727118.1| DNA-dependent helicase II [Escherichia coli ATCC 8739] gi|188494883|ref|ZP_03002153.1| DNA helicase II [Escherichia coli 53638] gi|193067953|ref|ZP_03048918.1| DNA helicase II [Escherichia coli E110019] gi|218556376|ref|YP_002389290.1| DNA-dependent helicase II [Escherichia coli IAI1] gi|260857781|ref|YP_003231672.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O26:H11 str. 11368] gi|260870538|ref|YP_003236940.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O111:H- str. 11128] gi|157068970|gb|ABV08225.1| DNA helicase II [Escherichia coli HS] gi|169757092|gb|ACA79791.1| DNA helicase II [Escherichia coli ATCC 8739] gi|188490082|gb|EDU65185.1| DNA helicase II [Escherichia coli 53638] gi|192958573|gb|EDV89011.1| DNA helicase II [Escherichia coli E110019] gi|218363145|emb|CAR00786.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI1] gi|257756430|dbj|BAI27932.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O26:H11 str. 11368] gi|257766894|dbj|BAI38389.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O111:H- str. 11128] gi|323155219|gb|EFZ41403.1| DNA helicase II [Escherichia coli EPECa14] gi|323173428|gb|EFZ59057.1| DNA helicase II [Escherichia coli LT-68] gi|323177826|gb|EFZ63410.1| DNA helicase II [Escherichia coli 1180] Length = 720 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|226356134|ref|YP_002785874.1| DNA helicase [Deinococcus deserti VCD115] gi|226318124|gb|ACO46120.1| putative DNA helicase UvrD [Deinococcus deserti VCD115] Length = 744 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 105/608 (17%), Positives = 186/608 (30%), Gaps = 117/608 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 +A YE K+ +DF DLI T L + + I +DE QD Sbjct: 178 EVAAEAYRRYEARKRSQNAIDFGDLITETVRLF---HEVPAVLNAVQNRARFIHVDEYQD 234 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ R L S R L VGD QSIY F GA+ + +L ++ Sbjct: 235 TNKAQYELTRLLA----------SRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYP-- 282 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RS+A +L + +K+ + H Sbjct: 283 ------DAKVYMLEHNYRSSARVLNLANKLIENNTERLDKTLKPVKEEGH---------- 326 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + D + +A ++ M G Sbjct: 327 ------------------PVMFHRAMDHRGEG-------EFVAEWLTRMRGEGR------ 355 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D+ +L R + +I R +I D I+D++A R Sbjct: 356 ----KFADMAILYRTNAQSRVIEESLR----RVQIPAKIVGGVGFYDRREIRDILAYARL 407 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI-----QKFANCGISKF 481 ++ DD++ ++ P + + K+ R ++ + + G K Sbjct: 408 AINPSDDVALRRIIGRPKRGIGDTALEKLMEWARLNETSLLTACANASERNILDRGAQKP 467 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRN 539 + + + A P F ++ G ++ L+E +N Sbjct: 468 VDFAELMQAMADAADNYEPAPFLRYVIENSGYLDLLRQEGQEGQVRMENLEELVNAAEEW 527 Query: 540 EQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 Q + ++ + + + + V +MT+H AKGLE PVVF+V T Sbjct: 528 SQTNEGTIADFLDDAALLSSVDDMRTRKENKDVPEDAVTLMTLHNAKGLEFPVVFIVGTE 587 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + K + EE RL YVG Sbjct: 588 EGLLPSKGALV----------------------------------EAGGIEEERRLFYVG 613 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +TRA ++L + N K+N + + E + W Y Sbjct: 614 ITRAMERLFLTAAQNRMQYGKTNAAEDSRFLEEIEGGFETIDPYGQVIEYRATTWKQYRP 673 Query: 715 STHHPENT 722 + + Sbjct: 674 TVPAAPSA 681 >gi|304414043|ref|ZP_07395411.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Candidatus Regiella insecticola LSR1] gi|304283257|gb|EFL91653.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Candidatus Regiella insecticola LSR1] Length = 1196 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 126/891 (14%), Positives = 273/891 (30%), Gaps = 141/891 (15%) Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164 D D+ + L + + ++ K++ VL F+DL+ + L++ Sbjct: 306 DALFLAIDQLFADPLTLRDLIITKAIREIREAVQQEKRQRAVLGFDDLLSRLDMALQQS- 364 Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224 + I + +IDE QDT Q+ + + + L +GD KQ Sbjct: 365 AGESLAAAIRSKYPLAMIDEFQDTDPQQYRIFNRIY--------ANQEHCGLLLIGDPKQ 416 Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 +IY+F GA+ +R + T L ++RS+ ++ V+++F + Sbjct: 417 AIYAFRGADIFTYIRARAEINAHYT----------LSTNWRSSHQMVRSVNRLF--NQVN 464 Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344 + I +++ ++ D + P W + + + Sbjct: 465 VPFLFEQIPFINVIAAKKNAELAFEI--------DKKIQPALHFWVQPGEKVNLGEYQQL 516 Query: 345 LARRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 +A++ A I + + + R +QA DI +LVR R + ++ L Sbjct: 517 MAQQCATQIRDWLTAGQLGRANLITQKGSRPVQASDITILVRNRTEAMVVRKALNMLAIP 576 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 + + + + + D KDL L + +L+ E + + C + + L + ++ Sbjct: 577 F---IYLSSQDSVFDTPEAKDLFWLLQAVLAPEQERTLRCAMATSLLGLDIKKLDQLNHN 633 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + + + + ++ + E+I + +L + G ++ Sbjct: 634 EQAWDALVDEFDGYRQHWRK--HGILPMLREIITRR------ELAENLLASPGGERRLTD 685 Query: 520 RFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576 L E L L +E + + IS+ E+ + ++ V+++T Sbjct: 686 LL------HLGELLQTAATQLDSEHALVRWIAQQISQPERQAEHQQLRLESDAPLVKVVT 739 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE P+V+L + H+ + N + Sbjct: 740 IHKSKGLEYPLVWLPFIVNFRQQHEAFYHDR-------------QNFTAMLDLNPNDESK 786 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 K ++ E RLLYV +TR+ I T +K + Sbjct: 787 KLAQQERLAEDLRLLYVALTRSVYHCSIGIAPLTKGSRKQGNSDLHQTAIGYLLQRGESG 846 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 S + ++ I Q KIP + + + + Sbjct: 847 DGDYLVEQLAILMTTDSKSDDIAVSVVAALDKQIWQPQKSTKIPLAAKTFTRQIQDHWRV 906 Query: 757 LNPSTIDTKGKTNLES------------------------------------LLSDNQTF 780 + S + ++++E + Sbjct: 907 TSYSALQQAFQSSVEPISQPQGVVKSVDKLTWLTPLNNDTASKTVSLVNNLTPHHFPRGA 966 Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---M 837 G +H LL+++ + K + L I N + Sbjct: 967 IAGTFLHGLLELLDFSQPIDLEWLTDQLLQKGFDTIWSPVLHQWLTDILHTPLNETGVSL 1026 Query: 838 TTAMSCDSYSEVSVSGKINCPKK--------------------------DIIISGRIDQI 871 + + +E+ IN + ++ G ID + Sbjct: 1027 ASLTPANKQAELQFHLPINSLLQANELDNLIKQYDPISARCQALNFQQVQGMLKGFIDLV 1086 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSIYEKILKD 913 Q ++ +YK++ + P + + Q +Y L Sbjct: 1087 FCWQGKFYLLDYKSNWLGEDSRAYHPTAMTMSMAEHRYDLQYQLYTLALHR 1137 >gi|212710171|ref|ZP_03318299.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM 30120] gi|212687170|gb|EEB46698.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM 30120] Length = 723 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 119/694 (17%), Positives = 221/694 (31%), Gaps = 132/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + S + + + L S+ Sbjct: 33 GAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINQLVGTSEGGMWIGT 92 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L Q ++ + + + ++ LK + + R Sbjct: 93 FHGLAHRLLRQHYLDANLPQDFQILDSDDQYRLIRRLLKAMNLDEKQWPPRQGMWYINGK 152 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + Y+EA + ++DF +L++ ++L + + Sbjct: 153 KDEGLRPQHIESYGNPVEATWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 209 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + +IL+DE QDT+ IQ+ IR L D + VGD+ QSIY + Sbjct: 210 LQHYRERFTNILVDEFQDTNSIQYAWIRVLAGD----------TGKVMIVGDDDQSIYGW 259 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R I L ++RST +IL + + + + G + Sbjct: 260 RGAQVENIQRFLNDFP--------GAETIRLEQNYRSTNNILKSANTLIANNSDRLGKN- 310 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + S F+ L + AR + Sbjct: 311 --------------------LW-------TEGGDGEPISLYCAFNELDE-------ARYV 336 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I +D +L R + ++ ++ Sbjct: 337 VGRIKQWHENGGAL----------QDCAILYRSNAQSRVMEEAL----IQGAMAYRIYGG 382 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD ++ R I ++ DD SF ++ +P E + + R + T++E Sbjct: 383 QRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGERTLDTVRQTARDQQLTLWE 442 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + S + ++ I L Q H ++ R + G Sbjct: 443 SCEYLLREQVLGGRAASSIERFLELIEALAKETQEMPLHVQADRVINDSGLRAMYEQEKG 502 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + + L+E +N T Q+ L L + L + N + V++MT+ Sbjct: 503 EKAQARIENLEELVNATRDFSYQDEDQDLMPLQAFLSHAALESGEGQADVNQDAVQLMTL 562 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE PVVF+V +F + Sbjct: 563 HSAKGLEFPVVFIVGMEEGMFPSQMSMDESG----------------------------- 593 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L I + Sbjct: 594 -----RLEEERRLAYVGITRAMVKLTITYAESRR 622 >gi|191166051|ref|ZP_03027886.1| DNA helicase II [Escherichia coli B7A] gi|190903827|gb|EDV63541.1| DNA helicase II [Escherichia coli B7A] Length = 720 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + +LDF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLLDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|262273203|ref|ZP_06051019.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP 101886] gi|262222781|gb|EEY74090.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP 101886] Length = 725 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 111/583 (19%), Positives = 192/583 (32%), Gaps = 121/583 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + A Y+EA + ++DF +L++ ++LL+ A IR HIL+DE QDT+ I Sbjct: 172 RVYAAYQEACDRAGLVDFAELLLRCHELLRD---KAHIREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + + VGD+ QSIY + GA+ + + R + Sbjct: 229 QYAWLRMMAGN----------SANVMIVGDDDQSIYGWRGAKIENITRFLQDFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL + + G S LW Sbjct: 273 --GAETIRLEQNYRSTGNILKASNHLIENNAERMGKS---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S F+ L + AR + I Sbjct: 310 -------TEGQEGELISVYSAFNELDE-------ARFVVGKIKAWQDEGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R I ++ Sbjct: 348 --NDTAILYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALAYLRLIGNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHV 484 DD +F ++ +P + + I R T++E Q A + + Sbjct: 402 FDDAAFERVVNTPARGLGDRTLDTIRLAARDRGATMWEASNQLLEEQALAGRAANSLRRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE- 540 I+ ++ L + + ++ R + + G + D L+E + T + E Sbjct: 462 IELVNALEDDTREMALFQQTDYVILHSGLRAMYEAEKGEKAQARIDNLEELVTATRQFEV 521 Query: 541 ----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 Q S L +S + ++MT+H+AKGLE PVVF+V Sbjct: 522 PEDVQEEMSPLSAFLSHAALEAGE--GQADEFEDAAQLMTLHSAKGLEFPVVFMVGVEEG 579 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F + + EE RL YVGMT Sbjct: 580 MFPSQMS----------------------------------AEEAGRLEEERRLCYVGMT 605 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 RA +L I K + + +++ Sbjct: 606 RAMQKLYITHAEMRRVYGKDMFHKASRFIRELPEECLEEVRMR 648 >gi|168467634|ref|ZP_02701471.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629989|gb|EDX48649.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 720 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 99/583 (16%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTAARQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|330837379|ref|YP_004412020.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] gi|329749282|gb|AEC02638.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] Length = 1218 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 147/1005 (14%), Positives = 298/1005 (29%), Gaps = 152/1005 (15%) Query: 48 KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE--INKKSPDLKEKLKKSQD 105 A + + F+ + F + +K + + D+ + +D Sbjct: 247 DIASSFLSLVNGWRASKDFAAIGDFCQDAETKWRKPGQVKAGSALAELKDITPEYVVMRD 306 Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 + + + L + + K+ +L F D+ D+L Sbjct: 307 KVGLFA---SALSSRGNLLPIYRFLQRYQEEFFLRKRAAGILTFSDVARLAVDILLTNPA 363 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT-----LFAVG 220 +R +HI+IDE QD + +Q +++ L E + R LF VG Sbjct: 364 ---VRTFYKNRFSHIMIDEFQDNNHLQKDLLYLLAERQDLCGAAIPVARELEKGKLFFVG 420 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 DEKQSIY F GA+ + + +EL ++R+ ++++ + +F Sbjct: 421 DEKQSIYRFRGADVSVFKQLGHEIE------EAGGIALELGTNYRTEPALISLFNTLFPG 474 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G ED R SR G + + + + + + ++ W + ++ Sbjct: 475 VMGSGG--EDYEADFRPLGSRSPSPGLLSRFTMMHQELNDLEDDPEDPWLATDEA----- 527 Query: 341 SASILARRIAYTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 A +A I M+ TD G R +I +L R R Sbjct: 528 ----EASAVADIIEEMLATDAYCVPDGTGGLRRPHPLEIGLLFRTGGGQISYEKAFRA-- 581 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 I L + DL + + D +++ L+SPL + + I Sbjct: 582 --RHIPYSLQVSRALLLEAPVNDLYSWLQLCAYPSDGIAYAAALRSPLCGIMDASLVPIL 639 Query: 458 TQRHETETVYEYIQK--------------------------------------------- 472 + ++ + + Sbjct: 640 RAYNGLDSTNDSTRDPKGQSQDDDQNERQTDRQTDRQNERHERKYPMWVPFAEPATADIP 699 Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-D 527 A ++ H +L + S D + + R +S V + Sbjct: 700 CFGSVAPDVKERYLHGCSLYRKLHEKVEAGSVADALSFLWHEGGYRLFLVSHASYHVYLE 759 Query: 528 VLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKG 582 D L+ +++ SL + L + V+++T+H +KG Sbjct: 760 HFDSLWELALQFDRSG-RSLLAFLDYLRPRLGQNEKLDEMELLREEPEGVQMLTIHKSKG 818 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------PGIPIWIPQSKSRNNIVS 633 LE P+V + G + K + + P K+ N + Sbjct: 819 LEFPIVIISGMGKGGANQKTPAWFPLELEPSSALPQGRTVPVPLHMDPENSFKTGNAVYY 878 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-----SNTSNEKKSNQRTWYDMVYDS 688 + L+ + E RLLYV +TRA L++ S +EKK + + + Sbjct: 879 QAKEELRSREEAELKRLLYVALTRAQYHLVLSGSDTAKTSGKDSEKKYLYSMVAENLDGN 938 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 D + + +I + + P + + + + L + Sbjct: 939 LQGDGLSYPLCDSRTIEPVRRKDFYGQSFTPSVSSIVVKAWYEDGQAVHVDTTTLRRAVT 998 Query: 749 NDINEPYILNPSTID----------TKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLP 797 + ++ + L ++N G +H L+ T Sbjct: 999 APSENLTTASIVEVEREMEGEAEGAELPACPSDGLIRTNNLQARFGTYVHALISHALTSS 1058 Query: 798 EHKRKNFITSYCTKN----AKLWPAKEYKNL----------LLSITRLLEN-PMMTTAMS 842 + + K+ + L + TR+L + + Sbjct: 1059 AQGLQAQESQSPELQSSGSYVFPQGKKREKLFPDGMPEGVDARAFTRMLHDGEQLARNFL 1118 Query: 843 CDS------------YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 + SEV + + ++I+ G D + + + ++KT Sbjct: 1119 ESTFWKNVSAQMVSCESEVPFFMRRDENGRNIVYEGIADLVVTLPDRVLVVDFKTDTF-- 1176 Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 +P H QL IY + K+ + Y+ P + Sbjct: 1177 ----RVPRIHERQLGIYREAFSRLTRKKT-EAAVCYLRSPDDVAL 1216 >gi|254468181|ref|ZP_05081587.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13] gi|207086991|gb|EDZ64274.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13] Length = 715 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 94/547 (17%), Positives = 189/547 (34%), Gaps = 113/547 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ ++ V DF +L++ + +LL + +R NH+L+DE QDTS + Sbjct: 170 EIYLEYEKQCQREGVADFGELLLRSYELLISNET---LRTHYQNRFNHVLVDEFQDTSEL 226 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ LT +FAVGD+ QSIY+F GA + + Sbjct: 227 QYRWLKLLTG----------KNNIIFAVGDDDQSIYAFRGANVGNMQSLQHDFNIE---- 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RS +IL+ +++ E G LW Sbjct: 273 ----KVIKLEQNYRSKNNILSAANEIIKNNEKRLGK---------------------DLW 307 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + A+ I I Sbjct: 308 -------TASGDGDPIKVFRALSDSDE-------AQYILDEIKMWHRKGK---------- 343 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 ++I +L R + ++ I + +K +A R I ++ Sbjct: 344 SYQNIAILYRSNAQSRILEHSM----VSNNIPYRVYGGLRFFERAEVKHALAYLRLIANK 399 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK--FQHVIKYI 488 +DD +F+ ++ P + + + +++E + S+ + I I Sbjct: 400 QDDNAFLRIVNFPTRGIGNRSLESLQDISKINNTSLWEAAKSSYKTPTSEKGISYFIDLI 459 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQN---SY 544 ++ Q + + +++ + +++ G + + L+E ++ +N Sbjct: 460 RKIEDEIQGLTLAESMDVVINFSGLKNHYMNDKDGQDRVSNLEELVSAATTFSENFNGED 519 Query: 545 SSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 +L+ L L AN + +++MT+H+AKGLE VVF+ + H+ Sbjct: 520 KNLE-LTEFLNYTSLESGELQAKANQDALQLMTIHSAKGLEFDVVFITGLEEGLCPHEQS 578 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL+YV +TRA + L Sbjct: 579 L----------------------------------IEADGLEEERRLMYVAVTRARENLY 604 Query: 664 ICKHSNT 670 + + Sbjct: 605 LTYAQSR 611 >gi|206576716|ref|YP_002236758.1| exodeoxyribonuclease V, beta subunit [Klebsiella pneumoniae 342] gi|206565774|gb|ACI07550.1| exodeoxyribonuclease V, beta subunit [Klebsiella pneumoniae 342] Length = 1178 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 131/872 (15%), Positives = 282/872 (32%), Gaps = 128/872 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + L + K++ L F+D++ ++ L+ D Sbjct: 309 LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I Q +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 368 ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ ++ + G + L ++RS+ +++ V+++FS+ +N Sbjct: 420 YAFRGADIFTYMKAR----------GDVTAHYTLDTNWRSSPGMVSSVNRLFSLSDNPFM 469 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 E ++ + G TV D+ P W D++ + +A Sbjct: 470 FREIPFLPVKAAAKNQGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519 Query: 347 RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + ++ R +QA DI VLVR R + + + L Sbjct: 520 QLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + + L ++L+ L + +L+ E + + L + +F + DI + Sbjct: 578 -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + E + + V+ + L+ +L + G ++ Sbjct: 637 AWDALVEEFSDYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + E L L +E L + I+E + + + ++ + V+I+T+H Sbjct: 689 ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + + D G ++ Sbjct: 743 KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E RLLYV +TRA + + S+ K N + E + Sbjct: 790 AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848 Query: 699 KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L + E W PL E +++ D+ ++ Sbjct: 849 GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPPLSARELQRRIADDWRVTSYSGLQQ 908 Query: 748 K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 D+ ++ + + + + + G +H L + + Sbjct: 909 HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPDG 968 Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854 + A+ L + +L+ + + + D E++ Sbjct: 969 WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGADIALNQLAARDKQVEMAFYLPIA 1025 Query: 855 ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 ++ + ++ G ID + + ++ +YK++ Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085 Query: 891 QEIEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117 >gi|282890111|ref|ZP_06298642.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499962|gb|EFB42250.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 721 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 112/619 (18%), Positives = 186/619 (30%), Gaps = 125/619 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + A Y+ + LDF+DL+ T L ++ I +LIDE QDT+ Sbjct: 164 QKVYAAYQRRMSEYNALDFDDLLYLTVRLFREYPE---ILAYYQNRWQFLLIDEYQDTND 220 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ ++ L E LF VGD QSIYS+ GA+ +L ++ Sbjct: 221 AQYAMVTHLVE----------KTHNLFVVGDPDQSIYSWRGAKIYNILNFEKDFP----- 265 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I L ++RS ++IL + + +N S L Sbjct: 266 ---GAQVIHLEQNYRSRSNILDASNALIDNNQNRLKKS---------------------L 301 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + P + A IA I N Sbjct: 302 WSDRGAGEKIKLFPAET--------------ERFEAGFIAERIQNYHEQG---------- 337 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 I +++V R + + I V IKD++A R Sbjct: 338 IPYNEMVVFYRTNFQSRVFEDTF----LHNDIPYVIVGGVSFYQRKEIKDILAFLRIANE 393 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------------VYEYIQKFANCG 477 D +SF + P + + KI + +I K Sbjct: 394 ASDYVSFARTINLPKRGIGDTTLEKIRVHAQKNRMSILSFAQALIEQQPLPFIFKLNQKQ 453 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--SRFGNEVIDVLDEFLNF 535 + ++ I L I+ + + + + + L+E ++ Sbjct: 454 QEGLKEYLQVIARLQEISAKGTIQEGVEAAIKESGYLGLLKEDAETFQDRKANLEELVSK 513 Query: 536 TLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 E ++ SL + EL + N V +MT+H KGLE VFL Sbjct: 514 ANEWETSTPEPSLSAFLEELSLKSTID--DTHHSKNRVNLMTIHNGKGLEFTAVFLAGME 571 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F H + + EE RL YVG Sbjct: 572 EDLFPHANSRGNF----------------------------------DALEEERRLCYVG 597 Query: 655 MTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 MTRA + L + N + + + +F + + + E+ Sbjct: 598 MTRAKEYLYLTFARNRHLWGTIRSQRASRFLSEIPPNFIEKIILNRRPDSYRPPIPEYKM 657 Query: 712 YEWSTHHPENTPLEREETI 730 E E LE +TI Sbjct: 658 VEPVIAVEEPESLETGDTI 676 >gi|145596329|ref|YP_001160626.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440] gi|145305666|gb|ABP56248.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440] Length = 795 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 111/772 (14%), Positives = 223/772 (28%), Gaps = 137/772 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P S + + + L+ ++ Sbjct: 92 AAGEMKERVAQLVGPRARLMWVSTFHSACVRILRAEHEH-----AGLKSTFSIYDADDSR 146 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+ P K + + + +LK +L + F + A Sbjct: 147 RLMQLVARELDLDP-KRYPARGLAAQVSNLKNELVDP--------EEFAARAKGPNERAL 197 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+DLI+ T LL+ + + H+L+DE Q Sbjct: 198 ----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAETYRRRFRHVLVDEYQ 250 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ +I+ L L VGD QSIY+F GA + +L +R Sbjct: 251 DTNHAQYVLIKELVSGTDGLDPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF-- 303 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I L ++RST IL + V + + S Sbjct: 304 ------TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS--------------- 342 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 ++ + + + A +A I ++ Sbjct: 343 ------------EAGTGDPIVGYVA--------DTEHTEADWVAREIDRLVDDGDT---- 378 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D+ V R + + + + + ++D +A R Sbjct: 379 -----RPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLR 429 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479 +++++D +S +L +P + + + + A + Sbjct: 430 ALVNEDDTVSLRRVLNTPRRGIGDRAEACVEALASRDRISFGAALRRARDAPGISTRAAN 489 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + + +A+ +P + +L + + +D L E ++ Sbjct: 490 GIAEFVALLDGVREVAETSAPEEVLEALLNRSGYLTELEESLDPQDAGRVDNLQELVSVA 549 Query: 537 LRN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 E+ +++ + + L + + V +MT+HTAKGLE P Sbjct: 550 REYTERVEGLGEEGERATVAGFLEQVALVADADQLPADDPEHQGVVTLMTLHTAKGLEFP 609 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VVFL VF H EE Sbjct: 610 VVFLTGMEDGVFPHARTFG----------------------------------DNHELEE 635 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YVG+TRA +L + + S + + + R ++ + + + Sbjct: 636 ERRLAYVGITRARQRLYLSRAVTRSAWGQPAYNAPSRFLEELPAELVRWERTEGSYTSWA 695 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758 + QL + + + P + Sbjct: 696 GGGGGVGGRADRGQGGFTGGTPKAAQLARRLGVDGSRLATASELPSAPPRVA 747 >gi|300921476|ref|ZP_07137824.1| DNA helicase II [Escherichia coli MS 115-1] gi|300411593|gb|EFJ94903.1| DNA helicase II [Escherichia coli MS 115-1] Length = 720 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAIAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|300900636|ref|ZP_07118795.1| DNA helicase II [Escherichia coli MS 198-1] gi|300355867|gb|EFJ71737.1| DNA helicase II [Escherichia coli MS 198-1] Length = 695 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + +I + +IL+DE QDT+ Sbjct: 146 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---YILQHYRERFTNILVDEFQDTNN 202 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 203 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 247 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 248 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 283 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 284 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 322 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 323 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 375 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 376 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 435 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 436 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 495 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 496 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 555 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 556 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 581 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 582 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 624 >gi|116617682|ref|YP_818053.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096529|gb|ABJ61680.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 766 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 177/551 (32%), Gaps = 118/551 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + A Y+ ++ +DF+DLI++T DL K+ + + + + ++ +DE QDT+ Sbjct: 189 VAEVYAAYQAELRRAQSVDFDDLIMSTIDLFKQ---APDVLERYQNQFEYLHVDEYQDTN 245 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++ L + R L VGD QSIY + GA +L ++ Sbjct: 246 DAQYTIVNLLAK----------RSRNLAVVGDADQSIYGWRGANMNNILNFEKDYP---- 291 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + L ++RST +IL + V + S Sbjct: 292 ----DAHTVLLEQNYRSTQNILDAANAVINNNNERIDKS--------------------- 326 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + ++ + A + I + +++ Sbjct: 327 LW-------TENGKGDKITYYRAQTERDE-------ANFVLANIQK---------SRQEK 363 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 D VL R + I + + I D+M+ + Sbjct: 364 NAAYSDFAVLYRTNAQSRGIEEAL----VKANMPYTMVGGHKFYERKEILDIMSYMNLMT 419 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQ 482 + D+ +F ++ P I ++ + Y E + SK Sbjct: 420 NPADNAAFERVVNEPKRGIGATSINRLRDFANRMNLSYMGAIENIELAPEITAKAASKLI 479 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + +H L +F + + L + RQ+ + E ++ L+EFL+ T Sbjct: 480 QFAEMMHNLRQQTEFLTVTELAELAMTKSGYRQKLAEKNDPESQGRLENLEEFLSVTKEF 539 Query: 540 EQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + S+ + L V +MT+H AKGLE PVVFLV Sbjct: 540 DSKYNPDDPESVDPMTDFLSSTALMSDLDDFEEGDGAVTLMTLHAAKGLEFPVVFLVGME 599 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F + EE RL YVG Sbjct: 600 EGIFPLS----------------------------------RAMMDDDQLEEERRLAYVG 625 Query: 655 MTRASDQLIIC 665 +TRA +L + Sbjct: 626 ITRAMKKLYLT 636 >gi|239832290|ref|ZP_04680619.1| DNA helicase II [Ochrobactrum intermedium LMG 3301] gi|239824557|gb|EEQ96125.1| DNA helicase II [Ochrobactrum intermedium LMG 3301] Length = 859 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 111/695 (15%), Positives = 196/695 (28%), Gaps = 152/695 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTEDFFVGK------------------------------NTHSSPRTLFAVG 220 Q+ +R L + + L VG Sbjct: 269 AQYLWLRLLAQRPQSRNTSATTQNTNAPIQPARASEGPRGAGERSELGVSENKVNLCCVG 328 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGAAAHLIAH 380 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 E G + + + + + +DS + Sbjct: 381 NEGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE-- 412 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR + I + +N + +LVR L Sbjct: 413 -----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL---- 453 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 ++ + L I+D MA R + DDL+ ++ +P E I ++ Sbjct: 454 GLNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQVHDYA 513 Query: 460 RHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 R +++ + S + V++ + + IL Sbjct: 514 RARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSMIDNTPHTELAETILDESGY 573 Query: 514 RQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570 + + E ++ L E + E L LE + + + + Sbjct: 574 TAMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDLD 625 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 V IMT+H+AKGLE VFL +F H+ Sbjct: 626 AVNIMTLHSAKGLEFETVFLPGWEEGLFPHQR---------------------------- 657 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 + +S EE RL YVG+TRA L I SN Sbjct: 658 ----ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMW 699 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 + E E + + +N Sbjct: 700 QSTIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNTYSTPGWQRAQQNR 759 Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 SDATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 794 >gi|303231758|ref|ZP_07318481.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-049-V-Sch6] gi|302513707|gb|EFL55726.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-049-V-Sch6] Length = 1273 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 114/714 (15%), Positives = 215/714 (30%), Gaps = 55/714 (7%) Query: 1 LKNRF-GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT----LQQ 55 L++ G ++ + + + + V A + Sbjct: 216 LRDTLWGRAMWDDQQAEINRIADRIEQMEPLLESPVGPKKWDKVYQEQLAALAQLKGAET 275 Query: 56 ASQTQCIEERFSLLSSFFLTQKFT-PQKNIITQEINKKSPDLKEKLKKSQ-------DEF 107 S + + T +K + + L + K S Sbjct: 276 WSDMVDVCRNLDTFTKASFTSLGKALEKGEVDGALADGFKSLGSQNKDSLKGMKNGLFHI 335 Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KK 162 + + + + L + Y+EAKK+ ++DF DL LL + Sbjct: 336 DESVLQQQFKDQYPLIHNLVELTIAFHKAYDEAKKEQGIMDFSDLEHLCLALLVEPGTED 395 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + ++ I++DE QDT+ +Q +I + S F VGD Sbjct: 396 DPKPSEVALELQDTFKEIMVDEYQDTNGVQETIINLI-----------SRVDNRFYVGDV 444 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 KQ+IYSF A+ I+L +FRS +ILT + +F Sbjct: 445 KQAIYSFRMADSSL---FMNKYNTYGLMNDAVERRIDLAKNFRSHENILTTTNFIFYQIM 501 Query: 283 NAQGLSEDSTTTIRHRSSR-------IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 + D R G V++ + + ++ + + D Sbjct: 502 TQEAAELDYGEKESLIPGRIVEKAPSDWVGGAVEIH-LLDTSDTNRSDEADGDSETAGDE 560 Query: 336 LPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 I I + + ++G R IQ +D VL R Sbjct: 561 PENN---ERELDFIIQKIKELYASKKQVQNADGSFRQIQWRDFAVLRRSLAGWGTRAV-- 615 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 I V N+R + I+ L++L + I + E DL +L S L +++ Sbjct: 616 -AAMRQAGIPAVVNERDGYFEAQEIQLLLSLLQIIDNPEQDLPMAAVLHSGLVGLDANEL 674 Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + + + I +I +++ D I Sbjct: 675 GAL-RLTGDGSLWSVMPTYAEQDQDERLLQFIAHIERWRTLSRRHGVADLLWDIYETLDY 733 Query: 514 RQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSA 567 G + E + + L + +E + + Sbjct: 734 VNYVGAMPNGLVRRANVMALYERAKGFESSGFRGLFRFLRFVESLRDSNQDMAVANVVTE 793 Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + VR+MT+H +KGLE PVVFL + + + + + + Sbjct: 794 ADDVVRLMTIHKSKGLEFPVVFLSGVQKKFNTMDFNSPLLVDKNGGIGLKGYYPDIRVSY 853 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 + + + E R+LYV +TRA D+L + + N +K+ Sbjct: 854 PSMPWLYCKSIKSDAMKAEEQRILYVALTRARDKLFLIGYINKEIKKEKGVGAH 907 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 52/159 (32%), Gaps = 13/159 (8%) Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRLLENPM 836 G ++H+ +Q + ++ + + +E L + + + Sbjct: 1108 TGAQWGTLMHEAMQWLPVKKYTQQSMTDMLDSLQAEGKFSDEERSLLSDRSLYGFFNSDL 1167 Query: 837 MTTAMS-CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHH 887 ++ E+ S + + + + G ID + + + +YKT Sbjct: 1168 GQRLIASKRVERELPFSMLFDGNRVYPDVENGERLFLQGIIDTVFVEDDQWVLVDYKTDR 1227 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + + + Q+ +Y++ L+ N + IY Sbjct: 1228 VKSGD--ELIRRYKIQMDLYKEALERL-TNMPVKASYIY 1263 >gi|315501309|ref|YP_004080196.1| ATP-dependent DNA helicase pcra [Micromonospora sp. L5] gi|315407928|gb|ADU06045.1| ATP-dependent DNA helicase PcrA [Micromonospora sp. L5] Length = 803 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 115/793 (14%), Positives = 225/793 (28%), Gaps = 137/793 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P S + + + L+ ++ Sbjct: 100 AAGEMKERVAALVGPRARLMWVSTFHSACVRILRAEHEH-----AGLKSTFSIYDADDSR 154 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+ P K + + + +LK +L + F + A Sbjct: 155 RLMQMVARELDLDP-KRYPARGLAAQVSNLKNELVDP--------EEFAGRAKGPNERAL 205 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+DLI+ T LL+ + + H+L+DE Q Sbjct: 206 ----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAESYRRRFRHVLVDEYQ 258 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ +I+ L L VGD QSIY+F GA + +L +R Sbjct: 259 DTNHAQYVLIKELVSGTEGIPPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF-- 311 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I L ++RST IL + V + + S Sbjct: 312 ------TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS--------------- 350 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 D+ Q + + + A +A I ++ Sbjct: 351 ------------DAGSGEQIVGYVA--------DTEHAEADWVAREIDRLVDDGET---- 386 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D+ V R + + + + + ++D +A R Sbjct: 387 -----RPGDVAVFYRTNAMSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLR 437 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479 +++ +D +S +L +P E + + + A + Sbjct: 438 AVVNDDDTVSLRRVLNTPRRGIGERAEACVEALSARDRISFGAALRRAKDAPGISTRAAN 497 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + +A +P + +L + + +D L E ++ Sbjct: 498 GIAEFVALLDAARELAGTGTPEEVLEAVLTRSGYLAELEESLDPQDAGRVDNLQELVSVA 557 Query: 537 LRN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 + ++L + + L I + V +MT+HTAKGLE P Sbjct: 558 REYTERIEALGADDERATLAGFLEQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFP 617 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VVFL VF H L EE Sbjct: 618 VVFLTGLEDGVFPH----------------------------------LRSLGDTRELEE 643 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YVG+TRA +L + + S + + R ++ + + + Sbjct: 644 ERRLAYVGITRARQRLYLSRAVTRSAWGAPAYNPPSRFLEELPPELVRWERTEGSYTSWG 703 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + + ++ +++ + + Sbjct: 704 GGGGGVGGRADRLGRSGFAGGTPKATELAKRLGVDASRLATASELKQAPKVAVGDRVNHQ 763 Query: 767 KTNLESLLSDNQT 779 + L +L+ Sbjct: 764 RYGLGRVLAVEGA 776 >gi|227535467|ref|ZP_03965516.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186877|gb|EEI66944.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 751 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 117/662 (17%), Positives = 204/662 (30%), Gaps = 132/662 (19%) Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +A E+ +L+ P K + I K +L Q Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVDPQ---------- 158 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 TY ++ + + A Y++ + + LDF+DLI+ T L +K Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++ +I +DE QDT+ Q++++ L E + L VGD QSIY + GA Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + +L K+ K ++ L ++RST IL+ + V +N Q + Sbjct: 265 QNILDFKKDYPK--------AQVVLLEQNYRSTKTILSAANDVIQNNQNRQAKT------ 310 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 LW +++ + + + + A + RRI I+ Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + D +L R + I I D Sbjct: 346 DNHR-------------KYSDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472 I+D +A R +++ EDD+SF ++ P + K+ ++ E Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAIANEHDWSLLEAAANA 448 Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526 A + K I +L + + + IL + E Sbjct: 449 ELSPIAGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTR 508 Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + L+E L+ T E + ++EL + EV +MT+H Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFLV +F Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 YVG+TRA +L + + + + + V Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGTT 652 Query: 700 LT 701 Sbjct: 653 QP 654 >gi|324007528|gb|EGB76747.1| DNA helicase II [Escherichia coli MS 57-2] Length = 696 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 147 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 203 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 204 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 248 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 249 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 284 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 285 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 323 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 324 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 376 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 377 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 436 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 437 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 496 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 497 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 556 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 557 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 582 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 583 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 625 >gi|68536650|ref|YP_251355.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] gi|68264249|emb|CAI37737.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] Length = 830 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 106/703 (15%), Positives = 199/703 (28%), Gaps = 171/703 (24%) Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKE-----KLKKSQDEFIKIRDRFNTYKMFKST 123 L++ F K ++T I S DLKE L + ++ + + Sbjct: 114 LNTNFSIYDSDDSKRLMTMIIKDASLDLKEFSPRGVLNVISNWKNELVGPVGALEEAQRD 173 Query: 124 LASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 T L Y+ + +DF+DLI +L +R + HI++ Sbjct: 174 SNPHTAQIATLYKTYQNRLRAANAVDFDDLIGEVVAILNNNPD---VREHYRRRFRHIMV 230 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q+E++ +L L VGD QSIY+F GA + + +R Sbjct: 231 DEYQDTNHAQYELVAALAGKGKA-------ECELCVVGDADQSIYAFRGATIRNIEEFER 283 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 I L ++RST IL+ + V + + Sbjct: 284 DYP--------DAHTILLEQNYRSTQKILSAANAVIDRNQGRRPKK-------------- 321 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 LW + + + + A I I +++ + Sbjct: 322 -------LW-------TDLGDGELIGGYVADNEHDE-------ANFIVEQIDDLVDNE-- 358 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 DI V+ R + I + + + I+D++ Sbjct: 359 -------GYSYGDISVMYRTNNASRAIEDVL----VRSGMPYKVVGGTRFYERREIRDIV 407 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK--------F 473 A + + + +D ++ ++ +P + I ++ + + Sbjct: 408 AYLKVLDNADDTVALRRIINTPRRGIGDKAIAQVTVHAEGQGIGFSAALGDAAAGKVAGL 467 Query: 474 ANCGISKFQHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFISR 520 + G + ++ + L + + +L ++ Sbjct: 468 SPRGRNSIGKFLEMMDALRAETESMEMTASDGSGLGLPDLGRVISAVLDVTGYKELLEKS 527 Query: 521 FGNE---VIDVLDEFLNFTLRNEQNS---------------------------------- 543 + +D L+E ++ Q S Sbjct: 528 NDPQDGARLDNLNELVSVGHEFSQESANLKAYEEMPGGGAGDAESDSSSDSAESAEAMLA 587 Query: 544 -----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 SLQ + + + + V +MT+HTAKGLE PVVFL F Sbjct: 588 EGEAPLGSLQAFLERVSLVADADQIPADE-QDMVTLMTLHTAKGLEFPVVFLTGWEDGQF 646 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H E RL YVG+TRA Sbjct: 647 PHMRALGDPT----------------------------------ELAEERRLAYVGITRA 672 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + + S + + + + + Sbjct: 673 KQRLFLTRAITRSGWGAPVNNPPSRFLSEVPEDLMEWIREEPA 715 >gi|330427927|gb|AEC19261.1| DNA helicase II [Pusillimonas sp. T7-7] Length = 761 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 109/696 (15%), Positives = 234/696 (33%), Gaps = 140/696 (20%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L S Q + ++ + I+ + ++ Q ++ Sbjct: 93 LRAHHRDAGLPQTFQILDSA--DQLASIKRLLKGAGIDDEKFPPRDV----QRFINGAKE 146 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + A + Y++ ++ V+DF +L++ +LL++ A IR Sbjct: 147 DGQRPADVEIYDAHRRRLVDIYQLYQDQCEREGVVDFAELLLRAYELLQRN---APIREH 203 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + HIL+DE QDT+++Q+ + L +FAVGD+ QSIY+F GA Sbjct: 204 YQRRFQHILVDEFQDTNMLQYRWLILLAG----------GGAHMFAVGDDDQSIYAFRGA 253 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R K ++I L ++RS IL + + + G + + Sbjct: 254 NVGNMADFERDYAK--------GNVIRLEQNYRSYGHILDSANALIAHNSARLGKNLWTE 305 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G+ V +++S + A+ I Sbjct: 306 QG-------EGEPVRV----------------------------IEQASDLLEAQWIIDE 330 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I +I + ++I VL R + +I + Sbjct: 331 IKALINDGRLR----------REIAVLYRSNAQSRIIEHAL----FSAGVPYKVYGGLRF 376 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + +K +A R + + DD S++ ++ P + ++ R + +++ + Sbjct: 377 FERQEVKHALAYLRLMDNPHDDTSWLRVVNFPTRGIGARTLEQLADVARQQGGSLFRAVP 436 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 + G + + I ++ H AQ S + ++ + + + R G + ++ L Sbjct: 437 AMSGKGGNNLARFAELIQQMAHEAQVLSLPELIEHVVHHSGLLEHYQNDREGADRLENLQ 496 Query: 531 EF-------------------------LNFTL--RNEQNSYSSLQELISELEQYPPTI-K 562 E L + + +++ L + L Sbjct: 497 ELVNAAAAFVAEANFEGLPAGRIPDDALAAASLGADASEALAAMSPLAAFLTHASLEAGD 556 Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 A + V++MTVH AKGLE VF+ +F H++ Sbjct: 557 NQAQAGQDAVQLMTVHAAKGLEFDSVFITGVEEGLFPHENSL------------------ 598 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 L+ + EE RL+YV +TRA ++L + + ++ Sbjct: 599 ----------------LEAAGLEEERRLMYVAITRARERLYLTLAQSRMLHGQTRYAMRS 642 Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 + + + + + + + A+ + Sbjct: 643 RFLDEIPDEHLKWLTPREGRAPVQAQQNAWSGAFRR 678 >gi|30064891|ref|NP_839062.1| DNA-dependent helicase II [Shigella flexneri 2a str. 2457T] gi|56480441|ref|NP_709620.2| DNA-dependent helicase II [Shigella flexneri 2a str. 301] gi|110807496|ref|YP_691016.1| DNA-dependent helicase II [Shigella flexneri 5 str. 8401] gi|30043151|gb|AAP18873.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str. 2457T] gi|56383992|gb|AAN45327.2| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str. 301] gi|110617044|gb|ABF05711.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 5 str. 8401] gi|281603206|gb|ADA76190.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2002017] gi|313647145|gb|EFS11600.1| DNA helicase II [Shigella flexneri 2a str. 2457T] Length = 720 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 II L ++RST++IL+ + + G L Sbjct: 273 ---GAEIIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|325499218|gb|EGC97077.1| DNA helicase II [Escherichia fergusonii ECD227] Length = 738 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 290 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 291 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 326 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 327 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 365 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 366 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 479 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 538 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 667 >gi|282859649|ref|ZP_06268751.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010] gi|282587567|gb|EFB92770.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010] Length = 839 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 108/554 (19%), Positives = 170/554 (30%), Gaps = 119/554 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YE K+ +DF+D+++NT LL+ +R K +IL+DE QDT+ Q Sbjct: 176 IYQAYEARCKQANAMDFDDILVNTYVLLRDN---QEVRQKYATLFEYILVDEYQDTNFAQ 232 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +I+ L E + + VGD+ QSIYSF GA +L K+ Sbjct: 233 VSIIQQLAEL----------HQRVCVVGDDYQSIYSFRGANIDNILDFKQKF-------- 274 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 +L ++RST I+ + + E I G ++ Sbjct: 275 IGAKTFKLERNYRSTQLIVQAANSLMKHNE----------RQIPKEVYSQEDEGDKLQYK 324 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S + A +A I + D Sbjct: 325 PCYSDKE-------------------------EALIVAKEIQRIKRAD---------NAT 350 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + R + IKD++A R + + + Sbjct: 351 YSDFAILYRTNAQSRTFEDELR----KQTVPYKIIGGLSFYQRKEIKDIIAYFRLVANND 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE-------YIQKFANCGISKFQHV 484 D+ +F ++ P I KI ++++ Y ++K Sbjct: 407 DEEAFRRIINYPARGIGNTTIQKIVDCASKNNVSLWQIITNPSLYDLNVNKGTLAKINGF 466 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 I+ I I + I+ S E + L+EFL+ Sbjct: 467 IELISNFIDRLSTTDAYLLGKDIIQLSGISADIYSSTDPEALSRQENLEEFLSAMQDFVE 526 Query: 540 --EQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 + L L++ N +V +MTVH AKGLE P VF+V Sbjct: 527 TGREEGREDYLYLTDYLQEVALYSDADKADDNSPKVTLMTVHAAKGLEFPTVFIVGLEEN 586 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F K EE RLLYV +T Sbjct: 587 IFPSPMS----------------------------------ASSKREIEEERRLLYVAIT 612 Query: 657 RASDQLIICKHSNT 670 RA II N Sbjct: 613 RAERHCIITNAKNR 626 >gi|239631845|ref|ZP_04674876.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526310|gb|EEQ65311.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 751 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 118/662 (17%), Positives = 204/662 (30%), Gaps = 132/662 (19%) Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +A E+ +L+ P K + I K +L Q Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVDPQ---------- 158 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 TY ++ + + A Y++ + + LDF+DLI+ T L +K Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++ +I +DE QDT+ Q++++ L E + L VGD QSIY + GA Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + +L K+ K +I L ++RST IL+ + V +N Q + Sbjct: 265 QNILDFKKDYPK--------AQVILLEQNYRSTKTILSAANDVIQNNQNRQAKT------ 310 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 LW +++ + + + + A + RRI I+ Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + D +L R + I I D Sbjct: 346 DNHR-------------KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472 I+D +A R +++ EDD+SF ++ P + K+ ++ E Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAFANEHDWSLLEAAANA 448 Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526 A + K I +L + + + IL + E Sbjct: 449 ELSPIAGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTR 508 Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + L+E L+ T E + ++EL + EV +MT+H Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFLV +F Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 YVG+TRA +L + + + + + V Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGNT 652 Query: 700 LT 701 Sbjct: 653 QP 654 >gi|121634106|ref|YP_974351.1| DNA helicase II [Neisseria meningitidis FAM18] gi|120865812|emb|CAM09544.1| DNA helicase II [Neisseria meningitidis FAM18] gi|325131618|gb|EGC54325.1| DNA helicase II [Neisseria meningitidis M6190] gi|325139127|gb|EGC61673.1| DNA helicase II [Neisseria meningitidis ES14902] Length = 735 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFILDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKIAAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 + IL + + ++ G + +D LDE +N + E +++ L E Sbjct: 467 QVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + A V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|218692089|ref|YP_002400301.1| DNA-dependent helicase II [Escherichia coli ED1a] gi|218429653|emb|CAR10617.2| DNA-dependent ATPase I and helicase II [Escherichia coli ED1a] Length = 720 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|15804402|ref|NP_290442.1| DNA-dependent helicase II [Escherichia coli O157:H7 EDL933] gi|15833997|ref|NP_312770.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. Sakai] gi|74314325|ref|YP_312744.1| DNA-dependent helicase II [Shigella sonnei Ss046] gi|110644138|ref|YP_671868.1| DNA-dependent helicase II [Escherichia coli 536] gi|117626072|ref|YP_859395.1| DNA-dependent helicase II [Escherichia coli APEC O1] gi|161486051|ref|NP_756593.2| DNA-dependent helicase II [Escherichia coli CFT073] gi|162138327|ref|YP_543324.2| DNA-dependent helicase II [Escherichia coli UTI89] gi|168750375|ref|ZP_02775397.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113] gi|168753710|ref|ZP_02778717.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401] gi|168768094|ref|ZP_02793101.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486] gi|168775636|ref|ZP_02800643.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196] gi|168780712|ref|ZP_02805719.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076] gi|168786651|ref|ZP_02811658.1| DNA helicase II [Escherichia coli O157:H7 str. EC869] gi|168801123|ref|ZP_02826130.1| DNA helicase II [Escherichia coli O157:H7 str. EC508] gi|170679582|ref|YP_001746130.1| DNA-dependent helicase II [Escherichia coli SMS-3-5] gi|191174264|ref|ZP_03035773.1| DNA helicase II [Escherichia coli F11] gi|194438675|ref|ZP_03070763.1| DNA helicase II [Escherichia coli 101-1] gi|195938102|ref|ZP_03083484.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. EC4024] gi|208807358|ref|ZP_03249695.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206] gi|208813979|ref|ZP_03255308.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045] gi|208819804|ref|ZP_03260124.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042] gi|209396002|ref|YP_002273330.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115] gi|215489141|ref|YP_002331572.1| DNA-dependent helicase II [Escherichia coli O127:H6 str. E2348/69] gi|218550963|ref|YP_002384754.1| DNA-dependent helicase II [Escherichia fergusonii ATCC 35469] gi|227888602|ref|ZP_04006407.1| excision endonuclease subunit UvrD [Escherichia coli 83972] gi|253775563|ref|YP_003038394.1| DNA-dependent helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163755|ref|YP_003046863.1| DNA-dependent helicase II [Escherichia coli B str. REL606] gi|254795809|ref|YP_003080646.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. TW14359] gi|261225587|ref|ZP_05939868.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. FRIK2000] gi|261255633|ref|ZP_05948166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. FRIK966] gi|291285227|ref|YP_003502045.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615] gi|293413255|ref|ZP_06655917.1| DNA helicase II [Escherichia coli B354] gi|301025742|ref|ZP_07189257.1| DNA helicase II [Escherichia coli MS 69-1] gi|301047305|ref|ZP_07194391.1| DNA helicase II [Escherichia coli MS 185-1] gi|306815148|ref|ZP_07449301.1| DNA-dependent helicase II [Escherichia coli NC101] gi|312969459|ref|ZP_07783661.1| DNA helicase II [Escherichia coli 2362-75] gi|331660158|ref|ZP_08361094.1| DNA helicase II [Escherichia coli TA206] gi|12518681|gb|AAG59006.1|AE005612_9 DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. EDL933] gi|13364219|dbj|BAB38166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. Sakai] gi|73857802|gb|AAZ90509.1| DNA-dependent ATPase I and helicase II [Shigella sonnei Ss046] gi|110345730|gb|ABG71967.1| DNA helicase II [Escherichia coli 536] gi|115515196|gb|ABJ03271.1| DNA-dependent ATPase I and helicase II [Escherichia coli APEC O1] gi|170517300|gb|ACB15478.1| DNA helicase II [Escherichia coli SMS-3-5] gi|187768818|gb|EDU32662.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196] gi|188015427|gb|EDU53549.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113] gi|189001426|gb|EDU70412.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076] gi|189359023|gb|EDU77442.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401] gi|189362636|gb|EDU81055.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486] gi|189373276|gb|EDU91692.1| DNA helicase II [Escherichia coli O157:H7 str. EC869] gi|189376660|gb|EDU95076.1| DNA helicase II [Escherichia coli O157:H7 str. EC508] gi|190905447|gb|EDV65077.1| DNA helicase II [Escherichia coli F11] gi|194422479|gb|EDX38478.1| DNA helicase II [Escherichia coli 101-1] gi|208727159|gb|EDZ76760.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206] gi|208735256|gb|EDZ83943.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045] gi|208739927|gb|EDZ87609.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042] gi|209157402|gb|ACI34835.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115] gi|209753228|gb|ACI74921.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753230|gb|ACI74922.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753232|gb|ACI74923.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753234|gb|ACI74924.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753236|gb|ACI74925.1| hypothetical protein ECs4743 [Escherichia coli] gi|215267213|emb|CAS11661.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O127:H6 str. E2348/69] gi|218358504|emb|CAQ91151.1| DNA-dependent ATPase I and helicase II [Escherichia fergusonii ATCC 35469] gi|227834441|gb|EEJ44907.1| excision endonuclease subunit UvrD [Escherichia coli 83972] gi|242379343|emb|CAQ34155.1| DNA-dependent ATPase I and helicase II, subunit of UvrABC Nucleotide Excision Repair Complex [Escherichia coli BL21(DE3)] gi|253326607|gb|ACT31209.1| DNA helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975656|gb|ACT41327.1| DNA-dependent ATPase I and helicase II [Escherichia coli B str. REL606] gi|253979812|gb|ACT45482.1| DNA-dependent ATPase I and helicase II [Escherichia coli BL21(DE3)] gi|254595209|gb|ACT74570.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. TW14359] gi|281180862|dbj|BAI57192.1| DNA helicase II [Escherichia coli SE15] gi|284923921|emb|CBG37020.1| DNA helicase II [Escherichia coli 042] gi|290765100|gb|ADD59061.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615] gi|291468203|gb|EFF10700.1| DNA helicase II [Escherichia coli B354] gi|294492576|gb|ADE91332.1| DNA helicase II [Escherichia coli IHE3034] gi|300300824|gb|EFJ57209.1| DNA helicase II [Escherichia coli MS 185-1] gi|300395865|gb|EFJ79403.1| DNA helicase II [Escherichia coli MS 69-1] gi|305851517|gb|EFM51971.1| DNA-dependent helicase II [Escherichia coli NC101] gi|307555939|gb|ADN48714.1| DNA helicase II [Escherichia coli ABU 83972] gi|307628876|gb|ADN73180.1| DNA-dependent helicase II [Escherichia coli UM146] gi|312286006|gb|EFR13924.1| DNA helicase II [Escherichia coli 2362-75] gi|315296794|gb|EFU56086.1| DNA helicase II [Escherichia coli MS 16-3] gi|320197622|gb|EFW72234.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli WV_060327] gi|320639296|gb|EFX08918.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. G5101] gi|320644681|gb|EFX13731.1| DNA-dependent helicase II [Escherichia coli O157:H- str. 493-89] gi|320650006|gb|EFX18509.1| DNA-dependent helicase II [Escherichia coli O157:H- str. H 2687] gi|320655352|gb|EFX23294.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660978|gb|EFX28421.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. USDA 5905] gi|320666102|gb|EFX33116.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. LSU-61] gi|323167561|gb|EFZ53267.1| DNA helicase II [Shigella sonnei 53G] gi|323189761|gb|EFZ75040.1| DNA helicase II [Escherichia coli RN587/1] gi|323949303|gb|EGB45193.1| DNA helicase II [Escherichia coli H252] gi|323954020|gb|EGB49818.1| DNA helicase II [Escherichia coli H263] gi|323959068|gb|EGB54737.1| DNA helicase II [Escherichia coli H489] gi|323969346|gb|EGB64645.1| DNA helicase II [Escherichia coli TA007] gi|323974395|gb|EGB69523.1| DNA helicase II [Escherichia coli TW10509] gi|324111038|gb|EGC05025.1| DNA helicase II [Escherichia fergusonii B253] gi|326344269|gb|EGD68029.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. 1125] gi|326347903|gb|EGD71617.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. 1044] gi|330908113|gb|EGH36632.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli AA86] gi|331052726|gb|EGI24761.1| DNA helicase II [Escherichia coli TA206] Length = 720 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|152971748|ref|YP_001336857.1| exonuclease V subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896335|ref|YP_002921071.1| exonuclease V subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|150956597|gb|ABR78627.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548653|dbj|BAH65004.1| exonuclease V beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1178 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 130/872 (14%), Positives = 281/872 (32%), Gaps = 128/872 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + L + K++ L F+D++ ++ L+ D Sbjct: 309 LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I Q +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 368 ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ ++ + G + L ++RS+ ++ V+++FS+ +N Sbjct: 420 YAFRGADIFTYMKAR----------GDVAAHYTLDTNWRSSPGMVGSVNRLFSLSDNPFM 469 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 E ++ + G TV D+ P W D++ + +A Sbjct: 470 FHEIPFLPVKAAAKNKGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519 Query: 347 RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + ++ R +QA DI VLVR R + + + L Sbjct: 520 QLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + + L ++L+ L + +L+ E + + L + +F + DI + Sbjct: 578 -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + E ++ + V+ + L+ +L + G ++ Sbjct: 637 AWDALVEEFSEYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + E L L +E L + I+E + + + ++ + V+I+T+H Sbjct: 689 ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + + D G ++ Sbjct: 743 KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E RLLYV +TRA + + S+ K N + E + Sbjct: 790 AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848 Query: 699 KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L + E W L E +++ D+ ++ Sbjct: 849 GLAARLADFCHGDIALQIPGELDLTPWQAPAATIPRLSARELQRRIADDWRVTSYSGLQQ 908 Query: 748 K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 D+ ++ + + + + + G +H L + + Sbjct: 909 HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPEG 968 Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854 + A+ L + +L+ + + + D E++ Sbjct: 969 WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGPDIALNQLAARDKQVEMAFYLPIA 1025 Query: 855 ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 ++ + ++ G ID + + ++ +YK++ Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085 Query: 891 QEIEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117 >gi|148558984|ref|YP_001259307.1| DNA helicase II [Brucella ovis ATCC 25840] gi|148370241|gb|ABQ60220.1| DNA helicase II [Brucella ovis ATCC 25840] Length = 858 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 196/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALIMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 + IMT+H+AKGLE VFL +F H+ Sbjct: 626 INIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + + E E + + +N Sbjct: 700 STIPSRFLEELPEAQVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|16131665|ref|NP_418258.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. MG1655] gi|89110206|ref|AP_003986.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. W3110] gi|170083295|ref|YP_001732615.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. DH10B] gi|193065672|ref|ZP_03046737.1| DNA helicase II [Escherichia coli E22] gi|194429230|ref|ZP_03061758.1| DNA helicase II [Escherichia coli B171] gi|194434041|ref|ZP_03066311.1| DNA helicase II [Shigella dysenteriae 1012] gi|218697531|ref|YP_002405198.1| DNA-dependent helicase II [Escherichia coli 55989] gi|238902889|ref|YP_002928685.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952] gi|256021443|ref|ZP_05435308.1| DNA-dependent helicase II [Shigella sp. D9] gi|256026160|ref|ZP_05440025.1| DNA-dependent helicase II [Escherichia sp. 4_1_40B] gi|260846411|ref|YP_003224189.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O103:H2 str. 12009] gi|293468131|ref|ZP_06664543.1| DNA helicase II [Escherichia coli B088] gi|300818716|ref|ZP_07098923.1| DNA helicase II [Escherichia coli MS 107-1] gi|300823349|ref|ZP_07103480.1| DNA helicase II [Escherichia coli MS 119-7] gi|300923317|ref|ZP_07139365.1| DNA helicase II [Escherichia coli MS 182-1] gi|300955181|ref|ZP_07167578.1| DNA helicase II [Escherichia coli MS 175-1] gi|301646119|ref|ZP_07246019.1| DNA helicase II [Escherichia coli MS 146-1] gi|307140512|ref|ZP_07499868.1| DNA-dependent helicase II [Escherichia coli H736] gi|307313613|ref|ZP_07593233.1| DNA helicase II [Escherichia coli W] gi|312971900|ref|ZP_07786074.1| DNA helicase II [Escherichia coli 1827-70] gi|331670659|ref|ZP_08371496.1| DNA helicase II [Escherichia coli TA271] gi|137194|sp|P03018|UVRD_ECOLI RecName: Full=DNA helicase II gi|43299|emb|CAA27671.1| unnamed protein product [Escherichia coli] gi|2367296|gb|AAC76816.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. MG1655] gi|85676237|dbj|BAE77487.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K12 substr. W3110] gi|169891130|gb|ACB04837.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. DH10B] gi|192926639|gb|EDV81268.1| DNA helicase II [Escherichia coli E22] gi|194412742|gb|EDX29036.1| DNA helicase II [Escherichia coli B171] gi|194417699|gb|EDX33798.1| DNA helicase II [Shigella dysenteriae 1012] gi|218354263|emb|CAV00941.1| DNA-dependent ATPase I and helicase II [Escherichia coli 55989] gi|238860998|gb|ACR62996.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952] gi|257761558|dbj|BAI33055.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O103:H2 str. 12009] gi|260451344|gb|ACX41766.1| DNA helicase II [Escherichia coli DH1] gi|291321509|gb|EFE60947.1| DNA helicase II [Escherichia coli B088] gi|300317898|gb|EFJ67682.1| DNA helicase II [Escherichia coli MS 175-1] gi|300420403|gb|EFK03714.1| DNA helicase II [Escherichia coli MS 182-1] gi|300524135|gb|EFK45204.1| DNA helicase II [Escherichia coli MS 119-7] gi|300528682|gb|EFK49744.1| DNA helicase II [Escherichia coli MS 107-1] gi|301075645|gb|EFK90451.1| DNA helicase II [Escherichia coli MS 146-1] gi|306906594|gb|EFN37106.1| DNA helicase II [Escherichia coli W] gi|309704248|emb|CBJ03596.1| DNA helicase II [Escherichia coli ETEC H10407] gi|310334277|gb|EFQ00482.1| DNA helicase II [Escherichia coli 1827-70] gi|315063105|gb|ADT77432.1| DNA-dependent ATPase I and helicase II [Escherichia coli W] gi|315138390|dbj|BAJ45549.1| DNA-dependent helicase II [Escherichia coli DH1] gi|315618489|gb|EFU99075.1| DNA helicase II [Escherichia coli 3431] gi|320198480|gb|EFW73081.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli EC4100B] gi|323161123|gb|EFZ47041.1| DNA helicase II [Escherichia coli E128010] gi|323182585|gb|EFZ67989.1| DNA helicase II [Escherichia coli 1357] gi|323380831|gb|ADX53099.1| DNA helicase II [Escherichia coli KO11] gi|323934201|gb|EGB30632.1| DNA helicase II [Escherichia coli E1520] gi|323938949|gb|EGB35168.1| DNA helicase II [Escherichia coli E482] gi|324115724|gb|EGC09659.1| DNA helicase II [Escherichia coli E1167] gi|331062132|gb|EGI34054.1| DNA helicase II [Escherichia coli TA271] gi|332084961|gb|EGI90143.1| DNA helicase II [Shigella dysenteriae 155-74] Length = 720 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|237702822|ref|ZP_04533303.1| DNA helicase II [Escherichia sp. 3_2_53FAA] gi|26110983|gb|AAN83167.1|AE016769_282 DNA helicase II [Escherichia coli CFT073] gi|91074912|gb|ABE09793.1| DNA helicase II [Escherichia coli UTI89] gi|226902993|gb|EEH89252.1| DNA helicase II [Escherichia sp. 3_2_53FAA] Length = 738 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 290 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 291 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 326 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 327 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 365 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 366 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 479 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 538 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 667 >gi|148212|gb|AAA67609.1| DNA helicase II [Escherichia coli str. K-12 substr. MG1655] Length = 720 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|82546164|ref|YP_410111.1| DNA-dependent helicase II [Shigella boydii Sb227] gi|81247575|gb|ABB68283.1| DNA-dependent ATPase I and helicase II [Shigella boydii Sb227] gi|320185474|gb|EFW60243.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella flexneri CDC 796-83] gi|332089046|gb|EGI94157.1| DNA helicase II [Shigella boydii 3594-74] Length = 720 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|254039025|ref|ZP_04873076.1| DNA helicase II [Escherichia sp. 1_1_43] gi|226838716|gb|EEH70744.1| DNA helicase II [Escherichia sp. 1_1_43] Length = 738 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 290 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 291 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 326 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 327 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 365 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 366 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 479 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 538 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 667 >gi|323964058|gb|EGB59548.1| DNA helicase II [Escherichia coli M863] gi|327250663|gb|EGE62369.1| DNA helicase II [Escherichia coli STEC_7v] Length = 720 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|302869847|ref|YP_003838484.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC 27029] gi|302572706|gb|ADL48908.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC 27029] Length = 803 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 113/713 (15%), Positives = 209/713 (29%), Gaps = 137/713 (19%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P S + + + L+ ++ Sbjct: 100 AAGEMKERVAALVGPRARLMWVSTFHSACVRILRAEHEH-----AGLKSTFSIYDADDSR 154 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+ P K + + + +LK +L + F + A Sbjct: 155 RLMQMVARELDLDP-KRYPARGLAAQVSNLKNELVDP--------EEFAGRAKGPNERAL 205 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+DLI+ T LL+ + + H+L+DE Q Sbjct: 206 ----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAESYRRRFRHVLVDEYQ 258 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ +I+ L L VGD QSIY+F GA + +L +R Sbjct: 259 DTNHAQYVLIKELVSGTEGIPPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF-- 311 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I L ++RST IL + V + + S Sbjct: 312 ------TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS--------------- 350 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 D+ Q + + + A +A I ++ Sbjct: 351 ------------DAGSGEQIVGYVA--------DTEHAEADWVAREIDRLVDDGET---- 386 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D+ V R + + + + + ++D +A R Sbjct: 387 -----RPGDVAVFYRTNAMSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLR 437 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479 +++ +D +S +L +P E + + + A + Sbjct: 438 AVVNDDDTVSLRRVLNTPRRGIGERAEACVEALSARDRISFGAALRRAKDAPGISTRAAN 497 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + +A +P + +L + + +D L E ++ Sbjct: 498 GIAEFVALLDAARELAGTGTPEEVLEAVLTRSGYLAELEESLDPQDAGRVDNLQELVSVA 557 Query: 537 LRN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 + ++L + + L I + V +MT+HTAKGLE P Sbjct: 558 REYTERIEALGADDERATLAGFLEQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFP 617 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VVFL VF H L EE Sbjct: 618 VVFLTGLEDGVFPH----------------------------------LRSLGDTRELEE 643 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 RL YVG+TRA +L + + S + + R ++ + Sbjct: 644 ERRLAYVGITRARQRLYLSRAVTRSAWGAPAYNPPSRFLEELPPELVRWERTE 696 >gi|146300673|ref|YP_001195264.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] gi|146155091|gb|ABQ05945.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] Length = 778 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 98/572 (17%), Positives = 185/572 (32%), Gaps = 118/572 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y E K +DF+DL++ TN+LL + + K +IL+DE QDT+ Sbjct: 175 LGDIYQQYVERCFKAGAMDFDDLLLKTNELLTRFPE---VLAKYQDRFRYILVDEYQDTN 231 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++R+L++ F + + VGD+ QSIY+F GA +L ++ + Sbjct: 232 HSQYLIVRALSDRF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYE---- 277 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + L ++RST +I+ + V + Sbjct: 278 ----GVVMFRLEQNYRSTRNIVEAANTVMEHNKTKLDKV--------------------- 312 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 +W ++ P+ + S D+ R +A TI F + Sbjct: 313 VW------TANEFGPKIKVHRSLTDAEEG--------RFVASTI---------FEQKMQN 349 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + +L R + + R I IKD++ R ++ Sbjct: 350 QLHNGSFAILYRTNAQSRAMEDALR----KRDIPYRIYGGLSFYQRKEIKDVLCYLRLVI 405 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG-------ISKF 481 + +D+ + + ++ P + + K+ + +++E + +K Sbjct: 406 NPKDEEALIRVINYPARGIGDTTVEKLTIAANHYKRSIWEVMVNIDKIDLKLTSGTKNKL 465 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLR 538 + + I I Q + Q+ E + ++E LN Sbjct: 466 KDFVTMIQSFQVIDQNQDAFYITDHVAKKTGLVQELKKDATPEGMAKIQNIEELLNGIKD 525 Query: 539 N---EQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTG 594 ++ + L +E + + V +MT+H AKGLE P VF+V Sbjct: 526 FTEGQKEIDGARGALSEFMEDVALATDLDKDTTDEDRVALMTIHLAKGLEFPHVFVVGME 585 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F + +S EE RL YV Sbjct: 586 EDLFPS----------------------------------AMSMSTRSELEEERRLFYVA 611 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 +TRA Q + + K + Sbjct: 612 LTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIE 643 >gi|161505541|ref|YP_001572653.1| DNA-dependent helicase II [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866888|gb|ABX23511.1| hypothetical protein SARI_03706 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 720 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETANMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|332084670|gb|EGI89858.1| DNA helicase II [Shigella boydii 5216-82] Length = 720 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|300904068|ref|ZP_07121948.1| DNA helicase II [Escherichia coli MS 84-1] gi|301303709|ref|ZP_07209830.1| DNA helicase II [Escherichia coli MS 124-1] gi|300403948|gb|EFJ87486.1| DNA helicase II [Escherichia coli MS 84-1] gi|300841009|gb|EFK68769.1| DNA helicase II [Escherichia coli MS 124-1] gi|315254178|gb|EFU34146.1| DNA helicase II [Escherichia coli MS 85-1] Length = 720 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L Q + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSQAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|299532528|ref|ZP_07045918.1| UvrD/REP helicase [Comamonas testosteroni S44] gi|298719475|gb|EFI60442.1| UvrD/REP helicase [Comamonas testosteroni S44] Length = 827 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 105/597 (17%), Positives = 190/597 (31%), Gaps = 153/597 (25%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE ++ V+DF +L++ + +LL+ +R+ + HIL+DE QDT+ + Sbjct: 191 ELYQLYEEQCQREGVVDFGELMLRSYELLRDD---VHLRHHYQRRFQHILVDEFQDTNKL 247 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q++ ++ L D + S ++ AVGD+ QSIY+F GA + R + Sbjct: 248 QYQWLKQLAGDDV--GGRYESAASVIAVGDDDQSIYAFRGARVGNMADFIREFDVK---- 301 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I+L ++RS ++IL + + S N G + Sbjct: 302 ----NQIKLEQNYRSYSNILDCANALISHNSNRLGKNL---------------------- 335 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + D A + I ++ D Sbjct: 336 -----RTSQGPGEPVRIYEAPSDLAE--------AAWMVDEIKQLVRND---------GF 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 ++I VL R + +I + KI + IK +A R + + Sbjct: 374 TRQEIAVLYRSNAQSRVIESAL----FNSKIPYRVYGGLRFFERAEIKHALAYLRLLENP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF+ ++ P I + T R ++ + + +K Q + I Sbjct: 430 HDDTSFLRVVNFPARGIGARTIEVLQDTARSSGTSLSDAVTAVGGTAGTKLQGFVAQIDV 489 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539 L Q + + + + + + G + I+ L E + Sbjct: 490 LREQTQGRTLREIIETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFVTQEGFGRDA 549 Query: 540 ------EQNSYSSLQE---------------------------------------LISEL 554 EQ + L + L + L Sbjct: 550 VAMPLDEQQNAPQLSQSPVSQGLDPNQPQLDEALKAPAGTAASMVNADTGETLSPLQAFL 609 Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 A + V++MTVH +KGLE VF+ +F H++ Sbjct: 610 VHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDAVFIGGVEEGLFPHEN----------- 658 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + + EE RL YV +TRA +L + Sbjct: 659 -----------------------AMMDRGGLEEERRLAYVAITRARKRLYLSHSQTR 692 >gi|294674328|ref|YP_003574944.1| UvrD/REP family ATP-dependent DNA helicase [Prevotella ruminicola 23] gi|294472390|gb|ADE81779.1| ATP-dependent DNA helicase, UvrD/REP family [Prevotella ruminicola 23] Length = 1075 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 133/849 (15%), Positives = 274/849 (32%), Gaps = 90/849 (10%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKST-LASLTLAKYLNAHYEEAKKKNCVLD--FEDLI 153 L+ + ++ ++ T L L + E+ ++ D F L+ Sbjct: 309 ASLLQILKCAVEAQEKQWKIFQSANLTLRHLNQL--RLLSSIEKKVREINETDNRF--LL 364 Query: 154 INTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 +T LL S +I KI ++ H++IDE QDTS IQW+ + L + + Sbjct: 365 SDTQQLLHSLIDGSDSPFIFEKIGTQLKHVMIDEFQDTSTIQWQNFKVLLSETMSHDDGS 424 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD KQSIY + + + + ++ I L ++RST ++ Sbjct: 425 N-----LIVGDVKQSIYRWRSGDWRLLNGIEQQFNSML------MEIKSLSTNYRSTRNV 473 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + ++ F+ N + S + QL + + + + Sbjct: 474 IDFNNQFFTHAANLEYASLEEL----------NCDERDQLKKAYADVTQQVPDGKPQEGK 523 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 + LP E + + +S +I + KDI +LVR P+I Sbjct: 524 ITIELLPSEEYQEEVLAHMTENVSELISQG----------VSQKDIAILVRYNFHIPIIA 573 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 +S+V ++ F L A+ ++ + +L+ +D L+ ++K+ L Sbjct: 574 QYFLEHLP--SVSIVSDEAFRLDASSAVCLMIQALQLLLTPDDQLTKAAIVKTWLCTVQG 631 Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 ++ + E + + H + + ++ I Sbjct: 632 KEL-------SDNEFMIAGANLDTYLPEAYIAHFDELL--------TLPLYELAEKIYAI 676 Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570 + + R + L F + + + +Q ++E E+ N Sbjct: 677 FE-----LHRLEGQG-AYLCAFYDQLANYVNENTTDIQAFLTEWEESLCKKTIQSDE-TN 729 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 +R++++H +KGLE V + + + I ND P +PI Q Sbjct: 730 GIRLISIHKSKGLEFDHVIIPFCDWPLEKTTDNIIWCQPNEAPFNDLPIVPIDYSQKAML 789 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 I H + LLYV TRA+ L + N + + +V Sbjct: 790 GTIYEGDYLHEHLQNMVDNLNLLYVAFTRAAKSLYVIGKRGVKNSRSALIELCLPLVAGD 849 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + +I +T E P + K I Sbjct: 850 MPDAQLEGMENNDAAIVFSMGSFSVGATEQKEKAPSKNPFLQKSEAVHVAI--------- 900 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808 + S E L ++ G ++H++ I E + Sbjct: 901 RNFESKVNFRQSNRSRDFIEGDE-LDQQHRYIQAGSVLHEIFSTI--QTEKDIPEALQRL 957 Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868 + + + + + L +P + + S + I + + R Sbjct: 958 QFEGILYDEEMTAEKITTMLRKRLADPRVASWFSP--RWTLFNECTILSVEDGEVKEHRP 1015 Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 D++ + ++K H P+ + AQ+ Y +L+ ++++ L YV Sbjct: 1016 DRVMTDGNEWIVVDFKFGHPSPE--------YHAQVRRYMDLLQSM-GHQNIKGYLWYVY 1066 Query: 929 EPKVFIIPQ 937 ++ + Sbjct: 1067 SNQIEEVEH 1075 >gi|254476738|ref|ZP_05090124.1| UvrD/REP helicase domain protein [Ruegeria sp. R11] gi|214030981|gb|EEB71816.1| UvrD/REP helicase domain protein [Ruegeria sp. R11] Length = 786 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 103/552 (18%), Positives = 176/552 (31%), Gaps = 117/552 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 A Y+ K+ +DF DL+++ + + + + + I++DE QDT++ Sbjct: 195 DFYAQYQTRLKELNAVDFGDLLLHMVTIFQDHPD---VLGQYQRWFRFIMVDEYQDTNVA 251 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 252 QYMWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL V G +LW Sbjct: 296 --GAMVVRLEQNYRSTGHILAAAGGVIRGNAARLGK---------------------ELW 332 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ ++D + AR I I M + Sbjct: 333 -------TEAGDGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGMAPV 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ +LVR + + L I+D MA R ++S Sbjct: 374 DLNDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRVVVSP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484 +DDL+F ++ +P + I T R ++ E + + G + + Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQTIQTIARANGVSLVEGARLAVESGQIKGKGGKALREL 489 Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I+ + +A + + +IL + + E ++ L E + Sbjct: 490 IEGLIRWGRLAGDADMTHMELAEVILDESGYTGMWQADKTPEAPGRLENLKELVKALEAF 549 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + +V IMT+H AKGLE P VFL +F Sbjct: 550 EN--------LQGFLEHVSLIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 601 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 602 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 629 Query: 660 DQLIICKHSNTS 671 I N Sbjct: 630 QICTISFAGNRR 641 >gi|310643059|ref|YP_003947817.1| recombination helicase adda [Paenibacillus polymyxa SC2] gi|309248009|gb|ADO57576.1| Recombination helicase AddA [Paenibacillus polymyxa SC2] Length = 1339 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 126/854 (14%), Positives = 264/854 (30%), Gaps = 108/854 (12%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERF 66 I D S + + +++ G P + L Q +TQ + Sbjct: 230 SILADAALSLRGAASLLEQAHETAIQAGGPAPYAMTLQEDAAMVKELLQELETQPWASLY 289 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA- 125 + + +K+ + ++ L+E KK + + A Sbjct: 290 DHFQAASFGKLKPVKKDQTEPALQERVKTLREAAKKMITDMKASLFGRRAEAYLEELHAT 349 Query: 126 ------SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR------YKI 173 + +++ K+ ++DF DL +L+ D + + + Sbjct: 350 APLMDELVETVIAFGERFQQHKQSKGLVDFGDLEHYCLKILRHPDSTPYKLLPSDAALEY 409 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 + + +L+DE QDT+ +Q +++R ++ + P F VGD KQSIY F AE Sbjct: 410 KAQFDEVLLDEYQDTNTVQEDIVRLVSRE---------EPGNRFMVGDVKQSIYRFRLAE 460 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDS 291 P L + + + + +I+L +FRS +++ V+ VF + + D Sbjct: 461 PGLFLNKYQRYGMQ---EQEDGFLIDLARNFRSREEVVDAVNLVFRQIMSVDVAEIEYDE 517 Query: 292 TTTIRHRSSRIGQ-------VGTVQLWEQV-------VSQHDSQCNPQQESWTSYFDSLP 337 + H +S + +L + + + S L Sbjct: 518 RAWLVHGASYPEKTEQEAASAYAPELLLVDKGGRGLSETLELPEMGDESALQESELAELA 577 Query: 338 QESSASILARRIAYTISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391 + +A + AR IA I + G R DI++L+R + Sbjct: 578 ELETAQLEARAIAQRIKELTGDTGQPLLIYDRGLKAMRPAVYGDIVILLRS---ASVWAP 634 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 L I G ++ +++L I + + D+ +L+SP+ +ED Sbjct: 635 LIVEELRLEGIPASGEQTTGFFKATEVEVMLSLLHIIDNPQQDIPLASVLRSPIVGLTED 694 Query: 452 DIFKICTQRHETETV-------------------------------------YEYIQKFA 474 ++ +I ++ + + + Sbjct: 695 ELAQIRLEKPDGLFYDALLAAAETEQVDQSVKGTSADVLEMDLFTEDSLSPPHSVHRDDG 754 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFL 533 N ++ + ++ + A+ S +L G++ L Sbjct: 755 NTLSARLRSFLRNLDAWRQEARQGSLSALIWNVLEETGYLDWVGGLPGGSQRQSNLRALY 814 Query: 534 NFTLRNEQN-SYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 + + E + S L ++ + + + VRIMT+H +KGLE PV Sbjct: 815 DRARQYETSTSNRGLFRFLTFISRLRERGGDLGSISGGTEPDQAVRIMTIHKSKGLEFPV 874 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VF+ T + L P + + + + E Sbjct: 875 VFIAGTAKMFNQQDLNAPFLMHKELGFGPKYVEEQNRVSYPTLPNLAIRRRSQLELLAEE 934 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 R+LYV +TR ++LI+ + + H + + L + Sbjct: 935 MRVLYVALTRPREKLIMTGTVKDLASRAAG------WARAKEHTETVLPDYILAAGRSYL 988 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767 +W+ H + + + + K +E + D + + Sbjct: 989 DWVGPALIRHPSATSLRKAAGDQEGDYHRLEHMPGADWLFKIVASETLSGSRVNSDREEE 1048 Query: 768 TNLESLLSDNQTFN 781 + E + Sbjct: 1049 VSAEERQKKTEALR 1062 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 35/304 (11%), Positives = 88/304 (28%), Gaps = 43/304 (14%) Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 S + + + ++ + ++ I DE + + P ER Sbjct: 1037 SGSRVNSDREEEVSAEERQKKTEALRNVELIELDEESETDIAAALSWTYPYERAGKTAAN 1096 Query: 734 MDEQKIPKKLF------------SPIKNDINEPYILNPSTIDTKG---KTNLESLLSDNQ 778 ++ + L S I + P S + Sbjct: 1097 TSVTEMKRWLEMQEIGSDDWLNLSSISQQADLPEDCENSDTGGSQLHLRRPKFMGNQRLT 1156 Query: 779 TFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835 RG + H L+ + + + + L E + I R + Sbjct: 1157 PTERGTVYHTLMLHLPLDGVMSAEIIEETKARLLNQRILLDVHAEALD-TDKILRFFSSE 1215 Query: 836 MMTTAM-SCDSYSEVSVSGKINCPK----------------------KDIIISGRIDQIS 872 + + + S E+ + + ++++G ID + Sbjct: 1216 LGSRMLRSSRIQRELPFTYTMRATDYWNHSLPVMLPEQKTVTEGGQDDKVLMNGIIDCLF 1275 Query: 873 ISQQNIFIFEYKTHHHVP-QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + + + +YKT + + H+ + QL +Y +++++ NK L ++ + Sbjct: 1276 ETPEGLVLLDYKTDRVSEYRTLSHLTDQYRFQLELYARVIEEITGNKVAEKWLYFIEAEE 1335 Query: 932 VFII 935 + Sbjct: 1336 SVRL 1339 >gi|312114573|ref|YP_004012169.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100] gi|311219702|gb|ADP71070.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100] Length = 793 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 113/657 (17%), Positives = 201/657 (30%), Gaps = 126/657 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y++ K +DF DL++ L + + + + +I++DE QDT++ Sbjct: 202 ELYAAYQKRLKDLNAVDFGDLLLENIRLFQNNPD---VLKQYHRWFTYIMVDEYQDTNVA 258 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + R + VGD+ QSIY + GAE +LR ++ Sbjct: 259 QYLWLRLLAQ----------GSRNICCVGDDDQSIYGWRGAEVDNILRFEQDFP------ 302 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RST IL K+ + G + L Sbjct: 303 --GAHVIRLEQNYRSTPHILGAASKLIANNAGRLGKT---------------------LR 339 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + W AR A I I Sbjct: 340 TGIDGADMGEKLAVRGIWDD-----------DEEARLAAEDIDRFRREG----------I 378 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 DI +LVR + + + IKD +A + + Sbjct: 379 ALNDIAILVRASFQMRAFEDRFVTM----GMPYRVIGGPRFYERQEIKDAIAYLEVLQNP 434 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQHV 484 DL F ++ P E + I R E +++ ++ K + + Sbjct: 435 AADLRFERIVNVPKRGLGEQAVQTIFGHARAEGLSLFHAARQITETEELKPAARRSLRAL 494 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + + LIL + + + + L E + F + + Sbjct: 495 TDCFERWRSLMGAMPHTELAELILDESGYTEMWQKDKSPQAQTRLENLKELIRFMDQFDN 554 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + LE + +A+ + V +MT+H AKGLE VVFL +F H+ Sbjct: 555 --------LAAFLEHVSLVMDADQAADGDRVSLMTLHGAKGLEFGVVFLPGWEEGLFPHQ 606 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + + EE RL YVG+TRA + Sbjct: 607 R--------------------------------ALDENGQEGLEEERRLAYVGITRAKRR 634 Query: 662 LIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 L I N + + + + D + + Sbjct: 635 LTISFAQNRRVHGSWQSALPSRFLDELAVEHAELKIESGGYGYGRFGAANGGYGASRFDE 694 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 PE +P + EE K+ + +++ P + G+ +S+ Sbjct: 695 PEVSPFDYEERG------TPGWKRAQTNWRSEGAAKNRQRPVPREIDGELVAKSVAE 745 >gi|315293210|gb|EFU52562.1| DNA helicase II [Escherichia coli MS 153-1] Length = 699 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 150 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 206 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 207 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 251 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 252 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 287 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 288 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 326 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 327 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 379 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 380 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 439 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 440 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 499 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 500 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 559 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 560 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 585 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 586 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 628 >gi|300939966|ref|ZP_07154595.1| DNA helicase II [Escherichia coli MS 21-1] gi|300455228|gb|EFK18721.1| DNA helicase II [Escherichia coli MS 21-1] gi|315284765|gb|EFU44210.1| DNA helicase II [Escherichia coli MS 110-3] Length = 695 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 146 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 202 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 203 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 247 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 248 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 283 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 284 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 322 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 323 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 375 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 376 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 435 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 436 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 495 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 496 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 555 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 556 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 581 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 582 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 624 >gi|300985670|ref|ZP_07177557.1| DNA helicase II [Escherichia coli MS 45-1] gi|300408054|gb|EFJ91592.1| DNA helicase II [Escherichia coli MS 45-1] Length = 699 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 150 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 206 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 207 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 251 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 252 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 287 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 288 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 326 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 327 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 379 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 380 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 439 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 440 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 499 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 500 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 559 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 560 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 585 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 586 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 628 >gi|300979415|ref|ZP_07174544.1| DNA helicase II [Escherichia coli MS 200-1] gi|300308006|gb|EFJ62526.1| DNA helicase II [Escherichia coli MS 200-1] Length = 698 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 149 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 205 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 206 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 250 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 251 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 286 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 287 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 325 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 326 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 378 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 379 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 438 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 439 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 498 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 499 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 558 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 559 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 584 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 585 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 627 >gi|167622483|ref|YP_001672777.1| DNA-dependent helicase II [Shewanella halifaxensis HAW-EB4] gi|167352505|gb|ABZ75118.1| DNA helicase II [Shewanella halifaxensis HAW-EB4] Length = 721 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 95/586 (16%), Positives = 189/586 (32%), Gaps = 116/586 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+++ + ++DF ++++ ++L + I HIL+DE QDT+ IQ Sbjct: 173 IYQIYQDSCDRAGLVDFAEILLRAHELWLNKPH---ILDHYQDRFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L S + VGD+ QSIY + GA+ + + + Sbjct: 230 YAWIRVLAG----------STANVMIVGDDDQSIYGWRGAQVENLHKFLADFPA------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RS+ +IL +++ + + G LW Sbjct: 274 --AQTIRLEQNYRSSGNILNASNQLIANNPDRMGKK---------------------LW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ + + AR I I++ Sbjct: 310 ------TDDKDGEPIGLYCAFNEMDE-------ARFIVGRITDWQDEGGKLE-------- 348 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ I+ + IKD M R I ++ Sbjct: 349 --DCAILYRSNAQSRVLEEAL----LHKGIAYRIYGGLRFFERQEIKDAMGYLRLINNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + I T R + T++E + + + + Sbjct: 403 DDAAFERVVNTPTRGIGDRTLEIIRTTARQQEMTLWEASLRLIEEKVLNGRAANAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541 I + + S ++ + + + + + L+E + Sbjct: 463 DLIIAMRMDSDELSLQRTTDHVIQTSGLKAMYEAEKSEKARARVENLEELVTAARSFVMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + + V++MT+H+AKGLE P+VF+ +F Sbjct: 523 EEIEDMGELNAFLSHAALEAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + +E RL YVGMTRA Sbjct: 583 QMAIDEG----------------------------------DRLDEERRLCYVGMTRAMQ 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 +L I + + + V + + +++ S Sbjct: 609 KLYITYAESRRIYGRESFARPSRFVKEIPEQYVQEIRMRTQVSAPA 654 >gi|116494556|ref|YP_806290.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334] gi|116104706|gb|ABJ69848.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei ATCC 334] Length = 751 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 120/699 (17%), Positives = 212/699 (30%), Gaps = 133/699 (19%) Query: 55 QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114 +A E+ +L+ P K + I K +L Q Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVDPQ---------- 158 Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 TY ++ + + A Y++ + + LDF+DLI+ T L +K Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 ++ +I +DE QDT+ Q++++ L E + L VGD QSIY + GA Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + +L K+ K +I L ++RST IL+ + V +N Q + Sbjct: 265 QNILDFKQDYPK--------AQVILLEQNYRSTKTILSAANDVIQNNQNRQAKT------ 310 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 LW +++ + + + + A + RRI I+ Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 + + D +L R + I I D Sbjct: 346 DNHR-------------KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472 I+D +A R +++ EDD+SF ++ P + K+ ++ E Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAFANEHDWSLLEAAANA 448 Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526 A + K I +L + + IL + E Sbjct: 449 ELSPIAGKARGQLAKFGKMIQQLGTRRKDLNVTKMMQAILEDSGYLSTLRAAHNLEADTR 508 Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + L+E L+ T E + ++EL + EV +MT+H Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFLV +F Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 YVG+TRA +L + + + + + V Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGTT 652 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 S + + + P + ++ + Sbjct: 653 QPKS-DIPFINRTDRAFSSPYSRHAAQKTATPVTVQAAP 690 >gi|320178104|gb|EFW53084.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella boydii ATCC 9905] Length = 720 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|313202687|ref|YP_004041344.1| ATP-dependent DNA helicase pcra [Paludibacter propionicigenes WB4] gi|312442003|gb|ADQ78359.1| ATP-dependent DNA helicase PcrA [Paludibacter propionicigenes WB4] Length = 769 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 93/600 (15%), Positives = 178/600 (29%), Gaps = 121/600 (20%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L K + Y K+ +DF+DL++ TN L + + K Q +IL+DE QDT Sbjct: 175 LMKDIYQIYCNRCKQADAMDFDDLLLQTNILFRNHPDT---LQKYQQLFGYILVDEYQDT 231 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +++ L E + VGD+ QSIYSF GA +L+ K + Sbjct: 232 NFAQYLIVKKLAEQ----------HEKICVVGDDAQSIYSFRGANIDNILKFKSSYKN-- 279 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + +L ++RST I+ + + + Sbjct: 280 ------ARVFKLEQNYRSTQTIVNAANSLIDKNAQQIRKT-------------------- 313 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + + +T + + +A IS++ Sbjct: 314 ----VFSEKETGKPIKVLSVFTDFEEGFI-----------VANNISDL---------RFS 349 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 +DI +L R + ++ R I IKD++A R + Sbjct: 350 DKYHYQDIAILYRTNSQSRVMEEALR----KQGIPYRIYGGLSFYQRKEIKDVIAYCRLV 405 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANCGIS-------K 480 + D+ + ++ P + + K+ + +E + + K Sbjct: 406 CNPNDEEALKRIINYPARGIGDTTVNKLIECSQLHAVSAWEVLSDMLKYNLPVNAGTANK 465 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 I + +D ++ + E + + E L Sbjct: 466 LAQFRSMIDVFAEQITTQNAYDLANSVVKVSGVIADTYTDHSPESMSRQENVQELLKAIH 525 Query: 538 RNEQNSYSS------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 + ++ L + +SE+ + ++V +MTVH AKGLE VF+V Sbjct: 526 EFCETKQANGEPTALLPDFLSEVSLLTDQD-TDKETDKDKVTLMTVHAAKGLEFKAVFIV 584 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 ++F + Sbjct: 585 GMEEELFPSPFCTQSERELEEERRL----------------------------------F 610 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV +TRA + I + K+N + D + ++W Sbjct: 611 YVALTRAEELCYISYAKSRFKNGKTNFSNPSRFIKDIDEQYLDMPAEAKPKQARINDWDD 670 >gi|188534866|ref|YP_001908663.1| exonuclease V subunit beta [Erwinia tasmaniensis Et1/99] gi|188029908|emb|CAO97792.1| Exodeoxyribonuclease V beta chain [Erwinia tasmaniensis Et1/99] Length = 1178 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 138/963 (14%), Positives = 301/963 (31%), Gaps = 143/963 (14%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 K W I + + + + +Q++ L + Sbjct: 233 LKRAWLAADNLQQLIEASGIDRRSYNSKHLPNWLEKITLWAQSET----LDYEVVKELER 288 Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 T++ L +++ E + +RD + + + Sbjct: 289 FGQRVLLEKTKKGEPPRHPLFDRIDDFLAEPLSLRDLVIARALQQ-----VRFVT----- 338 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 ++ K+ + L F+DL+ + L++ + I Q LIDE QDT Q+ + Sbjct: 339 -QQEKRLHAQLGFDDLLGRFDAALQQPG-GEMLASAIRQRYPVALIDEFQDTDPQQYRIF 396 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 R+L L +GD KQ+IY+F GA+ ++ + T Sbjct: 397 RTLYR--------RQPGSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT------- 441 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 L ++RS+ ++ V+++F +N SE I+ + VQ Sbjct: 442 ---LETNWRSSPAMVDGVNQLFLKQKNPFLFSEIPFVHIKPAAPNDSLKFNVQ------- 491 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-----NGKKRVI 371 + P W D + +AR+ A I + GK+R + Sbjct: 492 ---GEVQPALTFWLQPGDGVGVSDYQQFMARQCAAEICRWLSAGQRGEALIGKAGKQRPV 548 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 QA DI VLVR R + ++ L SV ++R + ++++ L + +L+ Sbjct: 549 QASDITVLVRSRSEAAVMREAFNALTIP---SVYLSNRDSVFTTPEAREMLWLLQAVLAP 605 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491 E + L + LF + + + + + + + + V+ + EL Sbjct: 606 EQERILRSALATSLFGVDALALDALTQDERAWDALVDEFVDYRQRWLK--RGVLPMLREL 663 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551 + +L + G ++ L E L + ++ ++ L Sbjct: 664 MMKR------AIAENLLASDSGERRLTDLL------HLGELLQEASATLDSEHALVRWLA 711 Query: 552 SELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 ++EQ + ++ + V+I+T+H +KGL+ P+V+L + + + Sbjct: 712 QQVEQPDGQVANQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVANFREADNAVYHDRQ 771 Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + D + I+ ++ E RLLYV +TR+ + Sbjct: 772 TFTALLDLQQ-------------SEESIELAEQERLAEDLRLLYVALTRSVFHCSVGIAP 818 Query: 669 --NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK------DEWIAYEWSTHHPE 720 + +K+ N + E L ++ A E + Sbjct: 819 LIKGTRKKEGNSDLHRSALGYLVQQGEPADASGLLAALQALNSDATALVTAAEADAAPWQ 878 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTIDTKGKTNL 770 ER+ + + + ++ ++ + + + L Sbjct: 879 GPQAERQILSSRALPRSPRDSWRVTSYSGLQQHGSAGALELLPRLDVDAAGEASGEQVPL 938 Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830 + + + G +H L + + + + + + + I R Sbjct: 939 LTPHTFPRGAGPGTFLHGLFETLEFSAPLDEEWLSQQL---SGQGLGEEWTPVMRDWIDR 995 Query: 831 LLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS--------------- 865 +L+ P+ + + E + +S + D ++ Sbjct: 996 ILQTPLNETGVSLHQLPAQARRVELQFYLPISRLLTAEALDRVVRQDPLSMACPPLDFYQ 1055 Query: 866 ------GRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQLSIYEKI 910 G ID + Q ++ +YK++ + + Q +Y Sbjct: 1056 VQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQQAMAQAMQAHRYDLQYQLYTLA 1115 Query: 911 LKD 913 L Sbjct: 1116 LHR 1118 >gi|325203353|gb|ADY98806.1| DNA helicase II [Neisseria meningitidis M01-240355] Length = 735 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 102/582 (17%), Positives = 192/582 (32%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ ++ V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + +FAVG Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR I + +I VL R + +I Sbjct: 333 -----ARFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P + + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +E A +K ++ I L + S + IL + + ++ Sbjct: 434 NEQGITLWQAACNAGAKAAKVVAFVRLIEALRNQVGQLSLSEIIVGILKDSGLTEHYRTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ L E +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPENISDDPAFPILAFLSNATLESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH AKGLE VFL F + Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|254805722|ref|YP_003083943.1| DNA helicase II [Neisseria meningitidis alpha14] gi|254669264|emb|CBA08172.1| DNA helicase II [Neisseria meningitidis alpha14] Length = 735 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 A Y++ ++ V+DF +L++ + ++L+ ++ +R NHIL+DE QDT+ +Q+ Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++ + +FAVGD+ QSIY F GA + A Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 ++L ++RS +IL + V + G + Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + D++ + ++++ D AR I + Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFILDETKALEREGWDLD--------- 351 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 +I VL R + +I I + IK +A R ++ +D Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 D + + ++ P + + T +E A +K ++ I L + Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549 S + IL + + ++ G + +D LDE +N + E +++ L E Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526 Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 +++ L + V++MTVH AKGLE VFL F Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ EE RL+YV +TRA Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612 Query: 660 DQLIICKHS 668 +L I Sbjct: 613 KRLYITMAQ 621 >gi|309796243|ref|ZP_07690653.1| DNA helicase II [Escherichia coli MS 145-7] gi|308120125|gb|EFO57387.1| DNA helicase II [Escherichia coli MS 145-7] Length = 720 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 99/553 (17%), Positives = 179/553 (32%), Gaps = 116/553 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTS 671 +L + Sbjct: 607 MQKLTLTYAETRR 619 >gi|326629622|gb|EGE35965.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 720 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPKRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|324014655|gb|EGB83874.1| DNA helicase II [Escherichia coli MS 60-1] Length = 672 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 123 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 179 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 180 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 224 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 225 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 260 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 261 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 299 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 300 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 352 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 353 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 412 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 413 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 472 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 473 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 532 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 533 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 558 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 559 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 601 >gi|325109169|ref|YP_004270237.1| exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305] gi|324969437|gb|ADY60215.1| Exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305] Length = 1168 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 145/895 (16%), Positives = 301/895 (33%), Gaps = 96/895 (10%) Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRFNTYKMFKSTLASLTLAKYLN 134 + + + E++ + + E+L+K I + D + + +L + + + Sbjct: 272 QGARENHWPDPEVHHQVKEACERLRKEVGALIDVLTLDEEAVRLAARYGMQALRITESVV 331 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 A YE+AK+ + D +L + ++ + +L+DE QDT +Q E Sbjct: 332 AAYEQAKQDRAM---LDFDDLLLNLRDLLQTRPAAKEQLQKSTKFLLLDEFQDTDPVQSE 388 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 ++R++ D LF VGD KQSIY F A+P + + ++ Sbjct: 389 IVRAICGDRLTSGG-------LFLVGDVKQSIYRFRRADPTVFRQLRSEIPQKGQ----- 436 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314 + L +FRS +L V+ +F + + ++ + Sbjct: 437 ---LALTKNFRSQQGVLDFVNFLFGPAMGEEYDALEAFDQTDYPP--------------- 478 Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK------ 368 ++ + + + A IA I ++ T + Sbjct: 479 -----AEKTEFLFANDPELTKPSAGEARVVEAEWIAARIEELLSDPTPRVRKRDKATGEV 533 Query: 369 --RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 R ++ DI VL R + L R + + D++ L R Sbjct: 534 TLRRVEPGDITVLFRAFSNLGLYEDALR----KRHLDYYVVAGRAFFAQQEVFDMVNLCR 589 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---EYIQKFANCGISKFQH 483 ++ D+ + V +L+SPLF +++D I ++ Q E E S + Sbjct: 590 YLDDDTDETTLVGVLRSPLFGWNDDTIMQMGRQFGEFSPALLSDEMPAGVTTDQASAVKS 649 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQN 542 + + EL+ + ++ G + L + L+ +Q Sbjct: 650 ARRVLRELLGRRLSSGIGPLLRFAVEQTAYDAALMTEFLGERKVANLRKLLDMADDFDQV 709 Query: 543 SYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + E L E+ + H + N VR+MTVH +KGLE PVVF+ D Sbjct: 710 GFLGMSEFADRLLESISEEAKEELAATHPESGNVVRLMTVHQSKGLEFPVVFVADVNR-- 767 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 ++ ++ + +++ +N + Q E RL YV TR Sbjct: 768 -PSRNNTDTAVLSPVLGPLLGLPRGAETEQKNPGMMMHSHAEGLEDQAESIRLFYVATTR 826 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A+D LI+ + + + + +D ++ E Sbjct: 827 AADLLILSAYFDEETKASGSWMKLLQERFDLQTGLPHGDQLLGQTQQAGIERDRIPRIAV 886 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFS-----------PIKNDINEPYILNPSTIDT-- 764 E + + + + + + L + P++ D + S +++ Sbjct: 887 RSEIPQVAKPKKVPRKLKLADWDDVLATTEPVAPPAIALPLEPDRAYRERFSVSELESVD 946 Query: 765 -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKN 812 + + + G ++H L+ LP FI T Sbjct: 947 SSFHSAMVTSGSTSNEASAAVRLREAELLGNLLHAALEQFDPALPPDNLSEFIERLATGF 1006 Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKDI--IISGRID 869 + + + +LL++ + + Y E + + P+ I+G +D Sbjct: 1007 SDYIAPDLRETAVSRFRQLLDSDFILELKTAGRLYRETEFLLRWSRPEVGRPAFIAGTVD 1066 Query: 870 QISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLV 921 + + + +YKT ++P E + Q+++Y K ++ P +S+ Sbjct: 1067 CLLQDSEGAWHLIDYKTG-NLPAEPSAVVDKFGLQMTLYAKAIEQLTGNPPRSIR 1120 >gi|251810340|ref|ZP_04824813.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|251806148|gb|EES58805.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis BCM-HMP0060] Length = 1224 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 110/600 (18%), Positives = 209/600 (34%), Gaps = 47/600 (7%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 313 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 372 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 373 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 425 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + +G I+L +FRS + Sbjct: 426 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 482 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL V + ++ Sbjct: 483 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 535 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 536 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 586 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 587 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 642 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ +I + Y+ I+ + K I+ I + + +Q Sbjct: 643 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 702 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 703 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 762 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 763 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 822 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + +K E RL+YV +TRA +QLI+ Sbjct: 823 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 882 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 75/225 (33%), Gaps = 20/225 (8%) Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790 ++ ++L + N + + + + + + G ++H ++ Sbjct: 1002 PSKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVM 1061 Query: 791 QVIFTLPEHKRKNFITSYCTKNAK--LWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSY 846 Q + + K+ + Y + L +++ + I ++ P+ + + Y Sbjct: 1062 QHLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVY 1121 Query: 847 SEVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE- 894 +E+ + +D+ II G ID I S + +YKT + E Sbjct: 1122 TELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEI 1181 Query: 895 --HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + + Q++ Y L+ + + L + + I Sbjct: 1182 GNQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1224 >gi|197247460|ref|YP_002148876.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211163|gb|ACH48560.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 720 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|313205710|ref|YP_004044887.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868] gi|312445026|gb|ADQ81381.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868] Length = 779 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 101/656 (15%), Positives = 196/656 (29%), Gaps = 131/656 (19%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A++ L + Y E KN +DF+DL++ TN+LL + + K +IL+ Sbjct: 168 ARANMKLIGQIYQKYVEVCFKNGAMDFDDLLLRTNELLTRFPE---VLAKYQDRFRYILV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q+ ++++L F + VGD+ QSIYSF GA +L K+ Sbjct: 225 DEYQDTNHSQYLIVKALASKFE----------NICVVGDDAQSIYSFRGANIYNILNFKK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + L ++RST +I+ + V + + + S Sbjct: 275 DYP--------DAVTVSLEQNYRSTQNIVNAANVVIAKNQQQFKKNVFSA---------- 316 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 ++ + + + S D+ A +A I + + Sbjct: 317 -----------------NEEGEKLKVYRSLSDADE--------ANFVAANIWELHNSQQR 351 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + +L R T R I +KDL+ Sbjct: 352 M---------FNEFAILYRTNSQTRAFEDALR----RKNIPYRVYGGLSFYQRKEVKDLL 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI--- 478 A R ++++ D + ++ P+ E K+ + ++ + + Sbjct: 399 AYLRLLVNENDAEALTRIINYPVRGIGETTQNKLIVYADGQGLSLAQVLSDLPFHTPRLG 458 Query: 479 ------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 +K + I + + + + + + E ++ + Sbjct: 459 LNNSALNKLNDFWQMIKAFQVMLKTENAYTVAMEVAKRSGLIKNLKDDQTPEGISRLENI 518 Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 E +N + +SL + + T + + + V +MT+H +KGL Sbjct: 519 QELMNSMQGFIEEQQQLEEGDASLSNFLENIALSADTQDK-PDGSEDMVSLMTIHLSKGL 577 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVV LV +F Sbjct: 578 EFPVVHLVGLEENLFPSFMSSSSREELEEERRL--------------------------- 610 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 YV +TRA Q + + K + + L S Sbjct: 611 -------FYVALTRAEKQAYLSYAVSRFQWGKITDSEPSRFLSEIDAQYLD----FLNAS 659 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + + ++ ++TP ++ + EP L P Sbjct: 660 MERHFVNHSGIKSNIFDDTPSAPIAF----KKKEPKKTLNRAETSLQPKEPKKLKP 711 >gi|300021793|ref|YP_003754404.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299523614|gb|ADJ22083.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888] Length = 818 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 106/581 (18%), Positives = 179/581 (30%), Gaps = 120/581 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 L A Y+ K DF DL++ L ++ + + +IL+DE QDT++ Sbjct: 230 AALYAAYQARLKDLNACDFGDLLLECIRLFREHPD---VLADYHRRFRYILVDEYQDTNV 286 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 287 AQYLWLRLLAQGC----------PNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 331 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I L ++RSTA+IL + + G + Sbjct: 332 ---GAKVIRLERNYRSTANILAAASGLIAKNAGRLGKTLF-------------------- 368 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + +++D + AR I I Sbjct: 369 --------TDGSAGSKIGVANFWDDEAE-------ARAIGEDIEQFQRAQE--------- 404 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + DI VLVR I L + + IKD +A I + Sbjct: 405 -KLNDIAVLVRASSQMRAIEDRFITL----GLPYRVIGGPRFYERQEIKDAIAYFDVIAN 459 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483 +DL F ++ P + I +I R + +Y+ ++ +N Sbjct: 460 SSNDLKFERIVNVPKRGLGDTSIKRIHELARVQGVPLYQAAREIVETDELSNKARKSLGD 519 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 +++ D L+L + + + + L E + F E Sbjct: 520 LMQAFERWRGNLDRIRHTDLAELVLDESGYTAMWQADKSPQAQTRLENLKELVRFMHDFE 579 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L LE + ++ + V +MT+H AKGLE +VFL +F H Sbjct: 580 T--------LQGFLEHVSLVMDADQGSDGDRVSLMTLHAAKGLEFGIVFLPGWEEGLFPH 631 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + K+ EE RL YVG+TRA Sbjct: 632 QRSLD--------------------------------ESGKAGLEEERRLAYVGLTRARR 659 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 + I N V + V + ++ Sbjct: 660 RAKISFAQNRRTHGLYQSALPSRFVDELPEATVDVIESEMP 700 >gi|225010856|ref|ZP_03701324.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] gi|225005064|gb|EEG43018.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] Length = 773 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 106/680 (15%), Positives = 214/680 (31%), Gaps = 127/680 (18%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDL 152 K+ Q+ ++ T K + + L + Y + K +DF+DL Sbjct: 138 KQIQNRISSYKNSLITVKAYHNNPDLLEADAMAKRPQTGAIYKAYVDRCFKAGAMDFDDL 197 Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212 ++ TN+LL + + K +IL+DE QDT+ Q+ ++++L++ + Sbjct: 198 LLRTNELLTRFPE---VLMKYQNRFKYILVDEYQDTNHSQYLIVKALSDRY--------- 245 Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272 + + VGD+ QSIYSF GA +L ++ + + L ++RST I+ Sbjct: 246 -QNICVVGDDAQSIYSFRGANIDNILNFQKDYDQ--------VAQYRLEQNYRSTDTIVK 296 Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332 + + S N G +L S D++ Sbjct: 297 AANSIISNNTNQLDKVV----------WTSNDPG--ELITVHRSPTDAEEG--------- 335 Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 R +A +I + + VL R + I Sbjct: 336 --------------RFVA---------GSILETKMQEQLPNSSFAVLYRTNSQSRAIEDA 372 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R I+ IKD++A R +++ +D+ + ++ P + Sbjct: 373 LR----KRDIAYRIFGGLSFYQRKEIKDVLAYLRLVINPKDEEALKRIINFPARGIGQST 428 Query: 453 IFKICTQRHE-TETVYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHDFF 504 + K+ + +++E ++ + K + + I + + Sbjct: 429 VDKLVVAANHYGRSIFEVMEHLDTIPLQINSGTKRKLEDFVTMIKSYQVLNETADAFVLS 488 Query: 505 TLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN---EQNSYSSLQELISELEQYP 558 + +F E ++ ++E LN +Q + + LE Sbjct: 489 EHVAKKAGLLLEFKKDGTPEGIAKMENIEELLNGIKDFVEGQQELADATGGIAEFLEDVS 548 Query: 559 PTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 + + V +MT+H AKGLE PVV++V +F Sbjct: 549 LATDLDKEVGDEDRVALMTIHMAKGLEFPVVYVVGMEEDLFPS----------------- 591 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + +S EE RL YV +TRA + + K Sbjct: 592 -----------------AMSMNTRSELEEERRLFYVALTRAEKKAYLTYAQTRYRWGKLV 634 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737 + + + + ++ + + K A + + +I + Sbjct: 635 DAEPSRFIEEIDDSFLDM-QVPIDSYRYKPMIDADIFGDIDKSKLRQTKPVSIAPPSSFR 693 Query: 738 KIPKKLFSPIKNDINEPYIL 757 +L K + + Sbjct: 694 PKENQLRKLRKIKPDLSNPI 713 >gi|297571848|ref|YP_003697622.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932195|gb|ADH93003.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] Length = 836 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 121/804 (15%), Positives = 229/804 (28%), Gaps = 143/804 (17%) Query: 8 SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + L + S + + T + A ++ + + Sbjct: 112 AAKEMRERLEGLLGDVARRMWISTFHSACVRILRTEHK-----ALGMRSSFTIYDAADSA 166 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+ ++ K + +++K DLK + DR + Sbjct: 167 RLMKIVAQEEQIDI-KAFSPKMLSRKVSDLKNSMVTVAQAKGHAIDRDD----------- 214 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + A Y+ + +DF+DLI+ T LL+ I + H+L+DE Q Sbjct: 215 -QVIAQAYAGYQRRLRAANAVDFDDLIMLTVGLLRDNPA---IAEHYRRRFRHVLVDEYQ 270 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q++++R L + L VGD QSIY+F GA + + + Sbjct: 271 DTNTAQYQLVRELVGEET-----DPIHGELTVVGDADQSIYAFRGATIRNIEDFDQDFPN 325 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + + L ++RST +ILT + + + + + Sbjct: 326 --------ATSVVLEQNYRSTQNILTAANSLIANNQGRRPKK------------------ 359 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + P+ + + + + + I Sbjct: 360 ---LW------TAAGDGPKLVGYVA--------DAEVDESAFVVEEIDA---------VR 393 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 K + DI V R + I + I + IKD +A Sbjct: 394 TKHGYKYGDIAVFYRANAQSRAIEEMF----VRSGIPYKVVGGTKFYERKEIKDALAYLH 449 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-------- 477 + + +D +S +L P + + + + A+ Sbjct: 450 AVANPDDTVSIRRILNEPKRGLGAKAEETVAFHAEKYGISFGQSLLDVAHPETAVAEGRS 509 Query: 478 ---------ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE--- 524 + + A+ +P D ++ A + Sbjct: 510 AVDGLQKRAANAMIAFATILETARKEAEEGAAPADILDSLMDASGYLDVLQESKDPQDEV 569 Query: 525 VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAK 581 ++ L EF + L E + ++ + + A EV +MT+HTAK Sbjct: 570 RVENLAEFHAVASDFRVRNPEGTLAEFLDQISLVADSDQIPDEAEGYEGEVVLMTIHTAK 629 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF F H Sbjct: 630 GLEFPVVFATGFEDGTFPHIRSLGSPT--------------------------------- 656 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E RL YV +TRA ++L I + + S + + + ++ + + Sbjct: 657 -ELAEERRLAYVALTRARERLYITRSATRSQWGAPQELPRSRFLDEIPDGVIEWRREESS 715 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI-LNPS 760 + + + K F+P K +EP P+ Sbjct: 716 MDTVRGSSWGSARDSWGSKRNSWSSAGDDSDFAPAIGSGKASFTPGKILDDEPAASTQPA 775 Query: 761 TIDTKGKTNLESLLSDNQTFNRGL 784 + T S + G Sbjct: 776 ASNGDVVTGGISAGDTVRHAKFGT 799 >gi|319401754|gb|EFV89962.1| recombination helicase AddA [Staphylococcus epidermidis FRI909] Length = 1218 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 112/600 (18%), Positives = 210/600 (35%), Gaps = 47/600 (7%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 307 DKYKSLVMKVKNDYFSRNADDLKRDMQQLAPRVAYLAQIVQDVIHSFGVQKRSRNILDFS 366 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + T++G I+L +FRS + Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTDSGL---RIDLSQNFRSRQE 476 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL V ++ Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDKVSHPVQLRALVEESSEN------- 529 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ KI + Y+ I+ + K I+ I + + +Q Sbjct: 637 YQFTEEELAKIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + +K E RL+YV +TRA +QLI+ Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLVYVALTRAKEQLILVGRVKDEKS 876 >gi|288933724|ref|YP_003437783.1| exodeoxyribonuclease V subunit beta [Klebsiella variicola At-22] gi|288888453|gb|ADC56771.1| exodeoxyribonuclease V, beta subunit [Klebsiella variicola At-22] Length = 1178 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 131/872 (15%), Positives = 282/872 (32%), Gaps = 128/872 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + L + K++ L F+D++ ++ L+ D Sbjct: 309 LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I Q +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 368 EALASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPETALLLIGDPKQAI 419 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ ++ + G + L ++RS+ ++ V+++FS+ +N Sbjct: 420 YAFRGADIFTYMKAR----------GDVAAHYTLDTNWRSSPGMVGSVNRLFSLSDNPFM 469 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 E ++ + G TV D+ P W D++ + +A Sbjct: 470 FREIPFLPVKAAAKNQGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519 Query: 347 RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + ++ R +QA DI VLVR R + + + L Sbjct: 520 QLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + + L ++L+ L + +L+ E + + L + +F + DI + Sbjct: 578 -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + E ++ + V+ + L+ +L + G ++ Sbjct: 637 AWDALVEEFSEYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + E L L +E L + I+E + + + ++ + V+I+T+H Sbjct: 689 ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + + D G ++ Sbjct: 743 KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E RLLYV +TRA + + S+ K N + E + Sbjct: 790 AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848 Query: 699 KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L + E W PL E +++ D+ ++ Sbjct: 849 GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPPLSARELQRRIADDWRVTSYSGLQQ 908 Query: 748 K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 D+ ++ + + + + + G +H L + + Sbjct: 909 HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPDG 968 Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854 + A+ L + +L+ + + + D E++ Sbjct: 969 WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGADIALNQLAARDKQVEMAFYLPIA 1025 Query: 855 ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 ++ + ++ G ID + + ++ +YK++ Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085 Query: 891 QEIEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117 >gi|170079561|ref|YP_001736194.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002] gi|169887230|gb|ACB00939.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002] Length = 1075 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 151/938 (16%), Positives = 295/938 (31%), Gaps = 114/938 (12%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 + + W ++ +E T+ + L++ S L + Sbjct: 190 LASETWQETQALITQYQGAPGDKLELVRQTLAELMSDLERNQDDITSVPFQSTLQALKSL 249 Query: 76 QKFT--PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA--- 130 + + +KN ++++I K + +F I T Sbjct: 250 KVGSVGSKKNWLSEDILKTVRSQAIACRDFVQKFPDISLLGLTLGELDERETQWVTTLQG 309 Query: 131 --KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 +++ +E K++ VLDF DL I L+ +R + LIDE QDT Sbjct: 310 AFQWVEQRLKEIKQQARVLDFNDLEIYALKALEDP----AVRDYYKERWRAYLIDEFQDT 365 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q +++ +LT L VGD+KQSIY F A+ + + Sbjct: 366 NPTQGKLLEALT-------GRSEEQSKLTIVGDDKQSIYGFRRADVEVFRAWRSQLNNG- 417 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + L SFR+ ++ ++ VF L E HR + Sbjct: 418 ---------VALTQSFRTHESLVKNINTVF-----RPVLGELHQDLDAHRQEAPHDPLHL 463 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 +++ + + + + + A++IA I M+ + + + Sbjct: 464 EIYRF-----------------APKEKMAIAEARKVEAQQIAQLIYEMLSQEMLVWDKAT 506 Query: 369 RVIQ---AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 R ++ KDI +L R + + ++I + + L D D ++L Sbjct: 507 RKLRAIAPKDIAILSRTWDPLDIYSQAL----AQWQIPFLQSSGGNLLDTPEALDGLSLL 562 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485 +FI + DDL+ V +L+SP S+ ++++ Q+ + + + + Q + Sbjct: 563 QFIANPNDDLALVAVLRSPFLTLSDRLLYELRPQKKDKKW----WSCLKDSQQPEVQQRV 618 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSY 544 + +L++ +P L + E FL EQ + Sbjct: 619 TILKQLLNKRDIFTPSQLLQLADQLTGYSAVITNLPQAERRLADWRGFLELLRHLEQGTG 678 Query: 545 SSLQ--ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L + +++ I R N V +MT+H AKGLE VV + D ++ + Sbjct: 679 DVLSVVRRLQRFQRHGVKIPRPPLEAENAVSLMTIHAAKGLEWSVVIVPDLTRKL---SN 735 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + ++ + L H K+ E R+LYV +TRA D+L Sbjct: 736 TSSSILFDPEFGVALKQRDDQGKLQKSVLFQLLEGHQKERETAEAKRVLYVALTRARDRL 795 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 I+ Q D D E Sbjct: 796 ILTTPKEKGGGLDLLQPGLEDFAIKDISPDLYPPAEPWC------------------EGD 837 Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782 + + QL+ E L P+ + + + N Sbjct: 838 ESSKPQQPPQLLLEPARSYGLELPMTALTTYARCPKKFYFEQIIRHPGLTEGESNYGAAI 897 Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842 G + H L+ + P + + L +P+ + Sbjct: 898 GSLTHTALEK-------DYQTVEQLNFHNQDLKLPPDKVQEALDLAQTFRTDPVFAAVQA 950 Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902 + + + ++++GR D + F+ + KT P H Sbjct: 951 GEK------EIALELRQNQLVLNGRADLV----GTNFVLDVKTDSKPN------PIEHRF 994 Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940 QL Y + + K + Y+ + +++ L Sbjct: 995 QLWAYARAAE-----KP-TAYIAYLRQRQLYTFSPTDL 1026 >gi|239947646|ref|ZP_04699399.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921922|gb|EER21946.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes scapularis] Length = 653 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 113/567 (19%), Positives = 187/567 (32%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + L +AK + Y++ + VLDF DL++ N+L K I ++ Sbjct: 159 LSASDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNP---KILRYYQEK 215 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N G + Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + W+ + AR IA I + Sbjct: 310 -------------LW---TDRESGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + D A +I +LVR T + I + + Sbjct: 343 VREDR---------YNAGNIAILVRAGFQTRSFEEAF----INSAIPYKIIGGLRFYERM 389 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRVYALERNISNFAAIKEMLE 449 Query: 476 ------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 + ++ I +P + IL + E I Sbjct: 450 IGEIKAKSYDSLKDLVTKIDNWYERFSIDAPINVVKAILDDSSYLEMLQEEKTEEALGRI 509 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 510 ENINEMLRAIAEF--------NDIHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF + + Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 589 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 EE R+ YVG+TRA L I N Sbjct: 590 EEERRIAYVGITRAKKDLYITHAENRK 616 >gi|325982040|ref|YP_004294442.1| UvrD/REP helicase [Nitrosomonas sp. AL212] gi|325531559|gb|ADZ26280.1| UvrD/REP helicase [Nitrosomonas sp. AL212] Length = 1158 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 157/936 (16%), Positives = 312/936 (33%), Gaps = 140/936 (14%) Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEFIKIRDRFNTYKMF 120 + ++ LT++ + +K I IN+ P K++ KK ++ + + ++ ++F Sbjct: 278 WCGIAELLLTREGSWRKKI---SINEGFPSGGSKIEKDEAKKWKNRWSDLIAALSSEEVF 334 Query: 121 KSTLASLTLAKYLN-----------------AHYEEAK---KKNCVLDFEDLIINTNDLL 160 + TL + L + K + + +DF ++ L Sbjct: 335 RQTLHDVRLLPPAYYTDKQWKILGAITRLLPNAVAQLKIIFQTSGFVDFSEVTQRALLAL 394 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + + +D I H+LIDE QDTS+ Q+++I L + +G R+LFAVG Sbjct: 395 GDSEFPTDLALALDYRIQHLLIDEFQDTSISQFKLIEKLIAGWEMGDG-----RSLFAVG 449 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D QSIY F AE L+ + I L +FRS I+ V++ F+ Sbjct: 450 DPMQSIYRFREAEVGLFLQARNT-----GIGHLVLQPITLSSNFRSQQGIIDWVNETFTQ 504 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + E + + + S ++ +V D + Sbjct: 505 IMPVRD--EIESGAVSYTPSTAIHSKLTEIAVKVYPLLDKNQIVE--------------- 547 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR++ I +R I +LVR R +I + Sbjct: 548 -----ARQVIEIIQQ-----------TRRDYPTNTIAILVRNRSHLQVIVQKLKE----S 587 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 + D +L ++DL+ + R +++ D++++ +L++P F DI + R Sbjct: 588 GLQFRAVDIELLHYRPVVQDLLIITRALINLADEVAWFALLRAPWCGFLLKDIDALLRSR 647 Query: 461 HE-----------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503 E + Y+ A I + + + + Sbjct: 648 KEEDCDTTISGTVLWKLIGDPNHWCYLSDDAKARIERLRDALAPCIMHRQRQPLRMTVEA 707 Query: 504 FTLILGAKK----GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559 LG ++ + D + + E + L L+ Sbjct: 708 MWQALGGPGCINPVIKKNRNDISATWSDAMIFLDYLEKQEESGTIRDLIGFEKGLDAL-- 765 Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG-SQVFSHKHIKKMHIMPSLNDDPGI 618 + ++IMT+H AKGLE V + G Q + K + K P Sbjct: 766 -YASQDVGADDSLQIMTIHKAKGLEFDTVIVPGLGREQRRNDKQLLKWIEQPHDRIKIES 824 Query: 619 PIWIPQ---------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + P+ + I + K K Q E +RLLYV +TR L + H N Sbjct: 825 KLVNPELLLAPIQETGLDSDPIYRWMEKIDCKKEQNEADRLLYVAVTRTRKFLHLLGHVN 884 Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-IAYEWSTHHPENTPLEREE 728 ++ V H V ++ ++ K+ ++ E + + Sbjct: 885 LVESEEGKYIPKKPAVGSLLHRLWPVMQLIYFDAAEKNTMGKNFKREDKDWEGFVNDIDN 944 Query: 729 T-IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787 I +L + +P S N+I E + ++E + + G ++H Sbjct: 945 QGIYRLKEGWVLPDAPKSVAWNEIYETKQVQQ---------DIEFSWASEMARHVGNVVH 995 Query: 788 KLLQVIFTLPEHKRKNFITSY--------CTKNAKLWPAKEYKNLLLSI----TRLLENP 835 + L+ I H + KE +N + I + + Sbjct: 996 RWLKKIADDELHTWDAARIRMMHGCFKQNLLADGMNGNDKEVENAIDRIILALINTISDE 1055 Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894 + +++ ++ + +++ ID+ ++ +YKT +H +IE Sbjct: 1056 RGRWILGRHRHAK--NELRVVGIVGNKLMNCVIDRTFNDSMGTRWVIDYKTGNHEGADIE 1113 Query: 895 ----HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926 + QL+ Y K+++ + + + Sbjct: 1114 NFMNREQIRYYEQLNYYAKLMRQLDSQ-PIKLGIYF 1148 >gi|254773951|ref|ZP_05215467.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium subsp. avium ATCC 25291] Length = 710 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 111/746 (14%), Positives = 207/746 (27%), Gaps = 141/746 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + + + L ++ Sbjct: 13 AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRR 69 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + D + Sbjct: 70 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPAAAVANLTDD---------SDELS 119 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 120 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 176 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L P L VGD QSIY+F GA + + +R Sbjct: 177 TNHAQYVLVRELVG---TDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 231 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I L ++RST +IL+ + V + + Sbjct: 232 ------DATTILLEQNYRSTQNILSAANSVIARNSGRRDKR------------------- 266 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 267 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAQKGE------ 304 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + I + I+D++A R Sbjct: 305 ---ITYNDVAVFYRTNNSSRSFEEVF----IRAGIPYKVVGGVRFYERKEIRDIIAYLRV 357 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIK 486 + + D +S +L +P + + + + + + A + + Sbjct: 358 LDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAE 417 Query: 487 Y-------IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + + + D +L R++ S + +D L+E ++ Sbjct: 418 KAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELVSVA 477 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRA--------------------HSANHNEVRIMT 576 ++ L L+ V +MT Sbjct: 478 HEF-STDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMT 536 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +HTAKGLE PVVF+ +F H + Sbjct: 537 LHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPV---------------------------- 568 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 E RL YVG+TRA +L + + S+ + + + + Sbjct: 569 ------ELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPESRFLREIPQELIEWR 622 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENT 722 + S + A + T T Sbjct: 623 RTAPAPSFSAPVSGAGRFGTPRAAPT 648 >gi|313884923|ref|ZP_07818675.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola ACS-139-V-Col8] gi|312619614|gb|EFR31051.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola ACS-139-V-Col8] Length = 787 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 125/719 (17%), Positives = 233/719 (32%), Gaps = 156/719 (21%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 G ++ L ++ + + QV+ N + ++ Q L + Sbjct: 29 AAGAGSGKTRVLTHRIAYLVQAKQVNPWNILAITFTNKAANEMKERVQALVGPAAESIWV 88 Query: 64 ERFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS---------QDEFIKIR 111 F + + L ++ N + +++ +K LK+ +D I Sbjct: 89 STFHAMCARILRREAAKVGYSSNFTIIDQGEQATLMKNILKELNLDGKQFNYKDFLYVID 148 Query: 112 DRFNTYKMFKSTLASLT-----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 D N ++ + AS + + A Y+ K N +DF DLI+ T LL++ + + Sbjct: 149 DAKNKGQLPEDFAASHAGFIEDIQANVYAKYQAYLKANNSMDFNDLILLTVKLLEENEET 208 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 R + +I +DE QDT+ Q+ +++ LT R + VGD QSI Sbjct: 209 ---RLFYQHKFQYIHVDEYQDTNQSQYLLVQLLTGIL----------RNVCVVGDADQSI 255 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA + +L + + I L ++RST IL + V ++ Q Sbjct: 256 YGWRGANMENILNFEEDFP--------DATTILLEQNYRSTQTILNAANSVIENNKSRQA 307 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + ++ S+ + + A Sbjct: 308 KK---------------------LW-------SDKAKGEKVSFYIADNDRSE-------A 332 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + TI + + + DI VL R + + + ++ Sbjct: 333 MYVTATIERLKQSQQAKNQ---------DIAVLYRTQAQSRSLEDQF----LKANLAYRI 379 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465 I+D +A R I + D+LSF ++ P + + K+ + Sbjct: 380 VGGLKFYSRKEIQDTLAYLRLIDNPSDNLSFRRIVNVPKRGIGQTSVDKLQDLANQMGVS 439 Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 +YE +++ + +KF I +L A+F D + Sbjct: 440 LYEAMEQMVLSNIPSRTQAKFFAFKTMIDQLRQQAEFLPISDLVDQVWQQSGYLADLQKN 499 Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSS--------------------------LQELI 551 E I+ L+EF + T ++ S L + Sbjct: 500 KDIESMTRIENLEEFASVTKSFDEEDQSMRLEADPDMVDPDQDDQSETDLSQRQLLTLFL 559 Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611 +++ + + ++V +MT+H AKGLE P VF+V +F + + Sbjct: 560 TDISLVTDRENNE-NQDPDQVTLMTLHAAKGLEFPYVFMVGMEEGLFPLRRASENEEELE 618 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 YVGMTRA DQL + +N Sbjct: 619 EERRL----------------------------------AYVGMTRAQDQLFLSASANR 643 >gi|290511196|ref|ZP_06550565.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. 1_1_55] gi|289776189|gb|EFD84188.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. 1_1_55] Length = 1178 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 131/872 (15%), Positives = 282/872 (32%), Gaps = 128/872 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + L + K++ L F+D++ ++ L+ D Sbjct: 309 LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I Q +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 368 ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ ++ + G + L ++RS+ +++ V+++FS+ +N Sbjct: 420 YAFRGADIFTYMKAR----------GDVTAHYTLDTNWRSSPGMVSSVNRLFSLSDNPFM 469 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 E ++ + G TV D+ P W D++ + +A Sbjct: 470 FREIPFLPVKAAAKNQGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519 Query: 347 RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + ++ R +QA DI VLVR R + + + L Sbjct: 520 QLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + + L ++L+ L + +L+ E + + L + +F + DI + Sbjct: 578 -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + E + + V+ + L+ +L + G ++ Sbjct: 637 AWDALVEEFSDYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + E L L +E L + I+E + + + ++ + V+I+T+H Sbjct: 689 ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + + D G ++ Sbjct: 743 KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E RLLYV +TRA + + S+ K N + E + Sbjct: 790 AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848 Query: 699 KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L + E W PL E +++ D+ ++ Sbjct: 849 GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPPLSARELQRRIADDWRVTSYSGLQQ 908 Query: 748 K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 D+ ++ + + + + + G +H L + + Sbjct: 909 HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPDG 968 Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854 + A+ L + +L+ + + + D E++ Sbjct: 969 WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGADIALNQLAARDKQVEMAFYLPIA 1025 Query: 855 ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 ++ + ++ G ID + + ++ +YK++ Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085 Query: 891 QEIEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117 >gi|301328420|ref|ZP_07221506.1| DNA helicase II [Escherichia coli MS 78-1] gi|300845170|gb|EFK72930.1| DNA helicase II [Escherichia coli MS 78-1] Length = 700 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 151 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 207 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 208 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 252 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 253 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 288 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 289 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 327 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 328 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 380 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 381 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 440 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 441 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 500 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 501 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 560 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 561 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 586 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 587 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 629 >gi|237801766|ref|ZP_04590227.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806704|ref|ZP_04593408.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024625|gb|EGI04681.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027818|gb|EGI07873.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] Length = 727 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIA 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|86148257|ref|ZP_01066553.1| DNA helicase II [Vibrio sp. MED222] gi|218710970|ref|YP_002418591.1| DNA-dependent helicase II [Vibrio splendidus LGP32] gi|85833953|gb|EAQ52115.1| DNA helicase II [Vibrio sp. MED222] gi|218323989|emb|CAV20351.1| DNA helicase II [Vibrio splendidus LGP32] Length = 724 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 98/548 (17%), Positives = 185/548 (33%), Gaps = 116/548 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + + Y+EA + ++DF ++++ +++LL+ IR HIL+DE QDT+ IQ Sbjct: 174 IYSAYQEACDRAGLVDFAEILLRSHELLRD---KKHIREHYQARFKHILVDEFQDTNNIQ 230 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R + + VGD+ QSIY + GA+ + + + Sbjct: 231 YAWLRMMAG----------PDCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFP------- 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 S + L ++RST IL +++ S G +LW Sbjct: 274 -GASTVRLEQNYRSTKTILQASNELISNNTERMGK---------------------ELW- 310 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S S ++ L + AR I Sbjct: 311 ------TDGNDGEPISVYSAYNELDE-------ARFTVSKIKEWQEKGGALE-------- 349 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ + + I+D ++ R + ++ Sbjct: 350 --DTAMLYRNNAQSRVLEEAL----IQGGLPYRIYGGMRFFERQEIRDALSYLRLMSNRS 403 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 +D +F ++ +P + + I R T++E I Sbjct: 404 NDAAFERVVNTPTRGLGDKTLETIRLAARDRGATMWEASVALIEEQVLPGRAAGALSRFI 463 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L H+ ++ + + G + I+ L+E + T + E+ Sbjct: 464 ELINALEDDTIELRLHEQTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKP 523 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 524 EEADEMSMLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPS 583 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + EE RL YVGMTRA + Sbjct: 584 QMS----------------------------------AEEAGRLEEERRLCYVGMTRAME 609 Query: 661 QLIICKHS 668 +L I Sbjct: 610 KLYITYAE 617 >gi|330009177|ref|ZP_08306461.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. MS 92-3] gi|328534896|gb|EGF61433.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. MS 92-3] Length = 1178 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 131/872 (15%), Positives = 281/872 (32%), Gaps = 128/872 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + L + K++ L F+D++ ++ L+ D Sbjct: 309 LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I Q +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 368 ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ ++ + G + L ++RS+ ++ V+++FS+ +N Sbjct: 420 YAFRGADIFTYMKAR----------GDVAAHYTLDTNWRSSPGMVGSVNRLFSLSDNPFM 469 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 E ++ + G TV D+ P W D++ + +A Sbjct: 470 FHEIPFLPVKAAAKNKGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519 Query: 347 RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + ++ R +QA DI VLVR R + + + L Sbjct: 520 QLCATQIRDWLSAGQRGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + + L ++L+ L + +L+ E + + L + +F + DI + Sbjct: 578 -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + E ++ + V+ + L+ +L + G ++ Sbjct: 637 AWDALVEEFSEYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + E L L +E L + I+E + + + ++ + V+I+T+H Sbjct: 689 ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + + D G ++ Sbjct: 743 KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + E RLLYV +TRA + + S+ K N + E + Sbjct: 790 AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848 Query: 699 KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L + E W L E +++ D+ ++ Sbjct: 849 GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPRLSARELQRRIADDWRVTSYSGLQQ 908 Query: 748 K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802 D+ ++ + + + + + G +H L + + Sbjct: 909 HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHHFPRGAAPGTFLHSLFEELDFTQPVPEG 968 Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854 + A+ L + +L+ + + S D E++ Sbjct: 969 WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGPDIALNQLASRDKQVEMAFYLPIA 1025 Query: 855 ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890 ++ + ++ G ID + + ++ +YK++ Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085 Query: 891 QEIEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117 >gi|193216394|ref|YP_001997593.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] gi|193089871|gb|ACF15146.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] Length = 765 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 118/636 (18%), Positives = 204/636 (32%), Gaps = 118/636 (18%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y E +KN LDF+DL+I L + I + +I+IDE QDT+ Sbjct: 184 TAEVFYKYNERLQKNNALDFDDLLIKPIKLFNEHPE---ILAHYQERFQYIMIDEYQDTN 240 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ V + L R + VGD+ QSIYS+ GA+ +L + Sbjct: 241 RAQYIVAKMLAGQ----------HRNICVVGDDAQSIYSWRGADIANILGFQNDY----- 285 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 ++ +I L ++R T IL V + V S + + Sbjct: 286 ---KEATICRLEENYRCTKTILKVANTVISNNKEQLEKTLY------------------- 323 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 S + + D + A ++A I Sbjct: 324 ---------TSNETGEPVTLFEATDERRE-------AEKVAMAIRE---------RKLSS 358 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 Q D + R + + RF I+ IKD++A RFIL Sbjct: 359 GNQNSDFAIFYRTNAQSRALEDALRF----NGIAYRVFGGVSFYKRKEIKDIVAYLRFIL 414 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGIS-----KFQH 483 + D+ S + ++ P E + ++ E ++YE I + + + Sbjct: 415 NSRDEESLLRIINFPARGVGETSLKRLKDIAIEEGFSLYEAICRATHYDLQNRLISALND 474 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 I +L IAQ + ++ +L + + + E D L EFLNF + Sbjct: 475 FRMLIEDLREIAQQHTAYEVVAELLRKTRLLEILKNENTAEANARYDNLQEFLNFARQFC 534 Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 S L + L+ + AN N+V +MT+H AKGLE PVVF+ ++F Sbjct: 535 DKSAED-PSLNAFLQSASLATDQDNADANGNQVTLMTIHAAKGLEFPVVFVTGLEERLFP 593 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + YV +TRA Sbjct: 594 LNPDEPRELEEERRL------------------------------------FYVALTRAE 617 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 +L + + +S + + + KL + I + A + H+ Sbjct: 618 KKLYVSFAKSRYKFGQSFPAKRSRFIEELDGGSVVTEGGKLLDEIRLQD--AEKSRYHYD 675 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 ++ R + + P + Sbjct: 676 DSEYTSRSNFSDRAQSRRVAPAASRQTSLTSSSAKK 711 >gi|295095174|emb|CBK84264.1| ATP-dependent DNA helicase UvrD [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 724 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/579 (17%), Positives = 183/579 (31%), Gaps = 116/579 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ IQ Sbjct: 177 VYKAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNNIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L D + VGD+ QSIY + GA+ + + R Sbjct: 234 YAWIRLLVGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST++IL+ + + G LW Sbjct: 277 -GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ L + AR + I Sbjct: 314 ------TDGVDGEPISIYCAFNELDE-------ARFVVNRIKTWQENGGALEQ------- 353 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +L R + ++ + + IKD ++ R I ++ Sbjct: 354 ---CAILYRSNAQSRVLEEAL----LQVSMPYRIYGGMRFFERQEIKDALSYLRLIANRN 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + + R T+++ ++ S Q + Sbjct: 407 DDAAFERVVNTPTRGIGDRTLDVVRQASRDRQLTLWQACRELLQEKALAGRAASALQRFL 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE-Q 541 + I L H ++ R + G I+ L+E + T + Sbjct: 467 ELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYN 526 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 527 EEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 QMSLDEGG----------------------------------RLEEERRLAYVGVTRAMQ 612 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + K + + +++ Sbjct: 613 KLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 651 >gi|157964534|ref|YP_001499358.1| DNA helicase II [Rickettsia massiliae MTU5] gi|157844310|gb|ABV84811.1| DNA helicase II [Rickettsia massiliae MTU5] Length = 653 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 112/567 (19%), Positives = 190/567 (33%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + L +AK + Y++ + VLDF DL++ N+L K I ++ Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPE---ILRYYQEK 215 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N G + Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + W+ + AR IA I + Sbjct: 310 -------------LW---TDRESGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + D A +I +LVR T + + + + Sbjct: 343 VREDR---------YNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGATSLNKIRVYALERNISNFAAIKEMLE 449 Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 G K + ++ I +P + IL + E I Sbjct: 450 IGEIKAKSYETLKELVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL +F + + Sbjct: 562 FDVVFLPGWEEGIFPSQRSLD--------------------------------EDGEKGL 589 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 EE R+ YVG+TRA L I + Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616 >gi|320191094|gb|EFW65744.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. EC1212] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 185/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ I L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWISLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|315022895|gb|EFT35919.1| ATP-dependent DNA helicase UvrD/PcrA [Riemerella anatipestifer RA-YM] gi|325336848|gb|ADZ13122.1| Superfamily I DNA and RNA helicase [Riemerella anatipestifer RA-GD] Length = 779 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 101/656 (15%), Positives = 196/656 (29%), Gaps = 131/656 (19%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 A++ L + Y E KN +DF+DL++ TN+LL + + K +IL+ Sbjct: 168 ARANMKLIGQIYQKYVEVCFKNGAMDFDDLLLRTNELLTRFPE---VLAKYQDRFRYILV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q+ ++++L F + VGD+ QSIYSF GA +L K+ Sbjct: 225 DEYQDTNHSQYLIVKALASKFE----------NICVVGDDAQSIYSFRGANIYNILNFKK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + L ++RST +I+ + V + + + S Sbjct: 275 DYP--------GAVTVSLEQNYRSTQNIVNAANVVIAKNQQQFKKNVFSA---------- 316 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 ++ + + + S D+ A +A I + + Sbjct: 317 -----------------NEEGEKLKVYRSLSDADE--------ANFVAANIWELHNSQQR 351 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + +L R T R I +KDL+ Sbjct: 352 M---------FNEFAILYRTNSQTRAFEDALR----RKNIPYRVYGGLSFYQRKEVKDLL 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI--- 478 A R ++++ D + ++ P+ E K+ + ++ + + Sbjct: 399 AYLRLLVNENDAEALTRIINYPVRGIGETTQNKLIVYADGQGLSLAQVLSDLPFHTPRLG 458 Query: 479 ------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 +K + I + + + + + + E ++ + Sbjct: 459 LNNSALNKLNDFWQMIKAFQVMLKTENAYTVAMEVAKRSGLIKNLKDDQTPEGISRLENI 518 Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 E +N + +SL + + T + + + V +MT+H +KGL Sbjct: 519 QELMNSMQGFIEEQQQLEEGDASLSNFLENIALSADTQDK-PDGSEDMVSLMTIHLSKGL 577 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E PVV LV +F Sbjct: 578 EFPVVHLVGLEENLFPSFMSSSSREELEEERRL--------------------------- 610 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703 YV +TRA Q + + K + + L S Sbjct: 611 -------FYVALTRAEKQAYLSYAVSRFQWGKITDSEPSRFLSEIDAQYLD----FLNAS 659 Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + + ++ ++TP ++ + EP L P Sbjct: 660 MERHFVNHSGIKSNIFDDTPSAPIAF----KKKEPKKTLNRAETSLQPKEPKKLKP 711 >gi|190892554|ref|YP_001979096.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652] gi|190697833|gb|ACE91918.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652] Length = 832 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 110/669 (16%), Positives = 205/669 (30%), Gaps = 113/669 (16%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ DF DL+++ + +K + + +IL+DE QDT+ Sbjct: 229 RDLYFAYQARLSTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 285 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + P+ + VGD+ QSIY + GAE +LR ++ Sbjct: 286 AQYMWLRLLAQR------SKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 334 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + E G + + Sbjct: 335 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR----------------- 374 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + + +DS + AR I I + + Sbjct: 375 ---------ADPDDVKVQVHASWDSEEE-------ARAIGEEIEQLQRNKHLL------- 411 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D+ +LVR L ++ + L I+D MA R + Sbjct: 412 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQ 464 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + + + R + + Sbjct: 465 PADDLAFERIINTPKRGLGDTTVRALHDYARARDIPMLAAAADMIETDELKPKARKALFD 524 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 VI+ + + + IL + + E L+ E Sbjct: 525 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 581 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 S + + LE + + N + V IMT+H+AKGLE VFL +F H+ Sbjct: 582 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFETVFLPGWEEGLFPHQRS 639 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL YVG+TRA + Sbjct: 640 LD--------------------------------ESGRAGLEEERRLAYVGITRAKRRCH 667 Query: 664 ICKHSNTSNEK---KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 I SN + + D + ++ +++ ++ + Sbjct: 668 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN 727 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQT 779 + + + + Y + P G+ +S S+ Sbjct: 728 SYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIDGELVAKSTSSEPSR 787 Query: 780 FNRG-LIIH 787 F G + H Sbjct: 788 FTLGDRVFH 796 >gi|282875534|ref|ZP_06284405.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135] gi|281295561|gb|EFA88084.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135] Length = 1218 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 110/600 (18%), Positives = 209/600 (34%), Gaps = 47/600 (7%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 307 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + +G I+L +FRS + Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 476 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL V + ++ Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 529 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ +I + Y+ I+ + K I+ I + + +Q Sbjct: 637 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + +K E RL+YV +TRA +QLI+ Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 876 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 20/225 (8%) Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790 ++ ++L + N + + + + + + G ++H ++ Sbjct: 996 PSKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVM 1055 Query: 791 QVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSY 846 Q + + K+ + Y + + +L +++ + I ++ P+ + + Y Sbjct: 1056 QHLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVY 1115 Query: 847 SEVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE- 894 +E+ + +D+ II G ID I S + +YKT + E Sbjct: 1116 TELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEI 1175 Query: 895 --HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937 + + Q++ Y L+ + + L + + I Sbjct: 1176 GNQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1218 >gi|264677052|ref|YP_003276958.1| UvrD/REP helicase [Comamonas testosteroni CNB-2] gi|262207564|gb|ACY31662.1| UvrD/REP helicase [Comamonas testosteroni CNB-2] Length = 827 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 106/597 (17%), Positives = 191/597 (31%), Gaps = 153/597 (25%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE ++ V+DF +L++ + +LL+ A +R+ + HIL+DE QDT+ + Sbjct: 191 ELYQLYEEQCQREGVVDFGELMLRSYELLRDD---AHLRHHYQRRFQHILVDEFQDTNKL 247 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q++ ++ L D + S ++ AVGD+ QSIY+F GA + R + Sbjct: 248 QYQWLKQLAGDDV--GGRYESAASVIAVGDDDQSIYAFRGARVGNMADFIREFDVK---- 301 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I+L ++RS ++IL + + S N G + Sbjct: 302 ----NQIKLEQNYRSFSNILDCANALISHNSNRLGKNL---------------------- 335 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + D A + I ++ D Sbjct: 336 -----RTSQGPGEPVRIYEAPSDLAE--------AAWMVDEIKQLVRND---------GF 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 ++I VL R + +I + KI + IK +A R + + Sbjct: 374 TRQEIAVLYRSNAQSRVIESAL----FNSKIPYRVYGGLRFFERAEIKHALAYLRLLENP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF+ ++ P I + T R ++ + + +K Q + I Sbjct: 430 HDDTSFLRVVNFPARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDV 489 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539 L Q + + + + + + G + I+ L E + Sbjct: 490 LREQTQGRTLREIIETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFVTQEGFGRDA 549 Query: 540 ------EQNSYSSLQE---------------------------------------LISEL 554 EQ + L + L + L Sbjct: 550 VAMPLDEQQNAPQLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFL 609 Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 A + V++MTVH +KGLE VF+ +F H++ Sbjct: 610 VHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDAVFIGGVEEGLFPHEN----------- 658 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + + EE RL YV +TRA +L + Sbjct: 659 -----------------------AMMDRGGLEEERRLAYVAITRARKRLYLSHSQTR 692 >gi|170724287|ref|YP_001751975.1| DNA-dependent helicase II [Pseudomonas putida W619] gi|169762290|gb|ACA75606.1| UvrD/REP helicase [Pseudomonas putida W619] Length = 729 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 120/721 (16%), Positives = 228/721 (31%), Gaps = 131/721 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + ++ + L + Sbjct: 33 GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109 F + L F Q+ ++ + I + D + + FI + Sbjct: 93 FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLVKRVIRELGLDEQRWPARQAQWFINGQ 152 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + S L + + YE+A ++ V+DF +L++ DL + + Sbjct: 153 KDEGLRPQHIQASGDLFLGTMRSIYEAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ +Q+ +R L +L AVGD+ QSIY + Sbjct: 210 LEHYQRRFRHLLVDEFQDTNAVQYAWLRLLAGK---------GGGSLMAVGDDDQSIYGW 260 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + +I L ++RST IL + + + G Sbjct: 261 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 310 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + + + ++ + AR + Sbjct: 311 -------------------ELW-------TDLGEGEPLTLYAAYNEHDE-------ARYV 337 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 TI ++I DI +L R + ++ +I Sbjct: 338 VETIESLIKQGN----------SRSDIAILYRSNAQSRVLEEAL----LRERIPYRIYGG 383 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IK+ MA R I + +D + ++ P E + I RH +++ Sbjct: 384 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWG 443 Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519 + + K I+ I L H ++ Q+ Sbjct: 444 AMCQLLAAKALKGRAASALGAFIELIESLAGKVADMPLHTMTQTVVEQSGLIIYHQEEKG 503 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G ++ L+E ++ E L L + L + + + +++MT+ Sbjct: 504 EKGQARVENLEELVSAARNFETTDDDADLSPLSAFLGHASLEAGEAQADEHEDSIQLMTL 563 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VFLV +F HK + Sbjct: 564 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 594 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA QL + V + + + Sbjct: 595 -----RLEEERRLAYVGITRAMRQLFMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 649 Query: 698 I 698 + Sbjct: 650 L 650 >gi|222035511|emb|CAP78256.1| DNA helicase II [Escherichia coli LF82] gi|312948366|gb|ADR29193.1| DNA-dependent helicase II [Escherichia coli O83:H1 str. NRG 857C] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|167553866|ref|ZP_02347610.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321791|gb|EDZ09630.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|205354488|ref|YP_002228289.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274269|emb|CAR39288.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVDNIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPKRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|319902365|ref|YP_004162093.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108] gi|319417396|gb|ADV44507.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108] Length = 763 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 95/603 (15%), Positives = 182/603 (30%), Gaps = 121/603 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + + Y E ++ +DF+DL+ T L + + + ++ +IL+DE QDT+ Sbjct: 175 VRDIYQRYWERCRQADAMDFDDLLFYTFLLFRDHPD---VLARYQEQFRYILVDEYQDTN 231 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q ++ L ++ R + VGD+ QSIYSF GA+ +L + Sbjct: 232 FAQHSIVLQLAKN----------HRHVCVVGDDAQSIYSFRGADIDNILYFTEVYP---- 277 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + +L ++RST I+ + + + S Sbjct: 278 ----GTKVFKLEQNYRSTQTIVRAANSLIEKNQRQIHKEVFS------------------ 315 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + + +Y D E + I+ + + Sbjct: 316 ---------KKEEGESIGVYQAYSDVEEGEI--------VVNKIAELHHREHCV------ 352 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 D VL R + + R + IKD++A R + Sbjct: 353 ---YSDFAVLYRTNAQSRIFEEAMR----KRGMPYRIYGGLSFYQRKEIKDVIAYFRLAV 405 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGIS-------KF 481 + D+ +F ++ P + + KI +++ + + G+ K Sbjct: 406 NPNDEEAFKRIINYPARGIGDTTVGKIIAAATGNNVSLWAVLCEPLTYGLELNKGTAGKL 465 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 Q I I + ++ T I+ E + ++E +N Sbjct: 466 QGFRDLISGFITDVAEKNAYETGTEIIRRSGIVNDVCQDNSPENLSRKENIEELVNGMSD 525 Query: 539 N------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 E N+ L + +SE+ + ++ +MTVH+AKGLE VF+V Sbjct: 526 FCARRQEEGNANILLVDFLSEVSLLTDQDSD-KDGDDEKITLMTVHSAKGLEFKNVFVVG 584 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F + EE RL Y Sbjct: 585 MEENLFPSGMVGDSP----------------------------------RALEEERRLFY 610 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA + K + + D R+ + + + + Sbjct: 611 VAITRAEKHCYLSFAKTRFRYGKMEFGSPSRFLKDIDARFLRLPQDVVVGRRIDEGAENF 670 Query: 713 EWS 715 Sbjct: 671 RRE 673 >gi|218701273|ref|YP_002408902.1| DNA-dependent helicase II [Escherichia coli IAI39] gi|218371259|emb|CAR19093.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI39] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|238897279|ref|YP_002922956.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465034|gb|ACQ66808.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1208 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 149/984 (15%), Positives = 310/984 (31%), Gaps = 150/984 (15%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 I K + L + + +L ++G ++ L + S F Sbjct: 228 IIKQITELKLKWQTTVPDLKTLIDKSGVDKRTYNSRYLPIWLEKITQWAYQESGSYFLPK 287 Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 + +++I+ ++ K P Q + D + + K + Sbjct: 288 ELNRFRQSILFEKTQKGHPP--------QHPLFSLIDFIFFQGLTLRDVVLTKAIKEIRL 339 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 E+ K++ L F+DL+ N + LK++ + I ++ ++IDE QDT Q+ + Sbjct: 340 SLEKEKRRRGELSFDDLLKNLDTALKQKG-GNLLSETIRKQYPIVIIDEFQDTDPQQYRI 398 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 S+ L +GD KQ+IY+F GA+ +R + Sbjct: 399 FHSIY--------AKKKDCGLLLIGDPKQAIYAFRGADIFTYIRARSQI----------A 440 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 L ++RS+ I+ V+++F+ E S+ + + T QL Sbjct: 441 HQYTLETNWRSSPAIVKAVNQLFTQIETPFLFSQIPFV----EAIASDKNRTYQL----- 491 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRV 370 D + P W + + ++ + A I + + + S+ R Sbjct: 492 -TIDKKIQPALHFWLQKGEGITVNQYKKCMSNQCAIEIRDWLTAGQQGRAQLMSDQGVRS 550 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++A DI VLVR R + L+ L SV ++R + D KDL+ + + +L+ Sbjct: 551 VKAADIAVLVRTRTEAALVKKALNRLSIP---SVYMSNRDSVFDTPEAKDLLWILQAVLA 607 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 E + C + + L + + + + + + + + + K V+ + + Sbjct: 608 PEIEKFLRCAMATSLLGLNTNALQALQSDGQAWDALVDEFHDYRQHWQKK--GVLPMLRK 665 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN---EQNSYSSL 547 LI + +L ++G ++ L E L EQ L Sbjct: 666 LIFQRR------LAENLLKTQEGERRLTDLL------HLSELLQQISEELDSEQALVRWL 713 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF-SHKHIKKM 606 + I+E K + + ++I+TVH +KGL+ +V+L G H + Sbjct: 714 AQKITEFNAESEDQKLRLETDCDLIQIVTVHQSKGLQYSLVWLPFIGYFQHQPHDERAQK 773 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-- 664 + + + + +K E RLLYV +TR+ I Sbjct: 774 EVFYHEPEHCTAVLDFKATHEN-------RALAEKERLSEDLRLLYVALTRSVYHCSIGI 826 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 +K+ + L+ + + E S +P + L Sbjct: 827 APFIKGGRKKQRESDIHLSALGYLIQKGMAGDAQYLSEKLKELEGEHIAVSLANPSDFSL 886 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE------------- 771 + + + + + + S++ L+ Sbjct: 887 WQPTKEPLPELTARHFTRKMQDHWQVTSYSKLQDSSSLTHSTVNRLKTDHILMQELLPSL 946 Query: 772 --------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811 S + + G +H LL+ + + + Sbjct: 947 DTEVITDVMNDPLFSSENSLSPHTFPRGAIPGTFLHDLLERLDFSQSIEIEWLKMQLLQ- 1005 Query: 812 NAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSGKINCPKK---- 860 K + K L +T +L+ P+ ++ + E+ I+ + Sbjct: 1006 --KGFDEKWLPMLHDWLTEILDTPLNDKRDLSLSKLTEKNKQVELQFHLPIDAMLESSNL 1063 Query: 861 ----------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 I++G ID + Q ++ +YK++ + Sbjct: 1064 DVLIKKHDPLSALCSTLSFPKVQGILTGFIDLVFFWQDQFYLLDYKSNWLGTSAKAYHRQ 1123 Query: 899 ---------THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1124 SIEQAMAEHRYDLQYQLYTLALHR 1147 >gi|261343070|ref|ZP_05970928.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316] gi|288314635|gb|EFC53573.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/579 (17%), Positives = 183/579 (31%), Gaps = 116/579 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ IQ Sbjct: 173 VYKAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNNIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 YAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------- 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST++IL+ + + G LW Sbjct: 273 -GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------LW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ L + AR + I Sbjct: 310 ------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ------- 349 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +L R + ++ + + IKD ++ R I ++ Sbjct: 350 ---CAILYRSNAQSRVLEEAL----LQVSMPYRIYGGMRFFERQEIKDALSYLRLIANRN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + + R T+++ ++ S Q + Sbjct: 403 DDAAFERVVNTPTRGIGDRTLDVVRQASRDRQLTLWQACRELLQEKALAGRAASALQRFL 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE-Q 541 + I L H ++ R + G I+ L+E + T + Sbjct: 463 ELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYN 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 EEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 583 QMSLDEGG----------------------------------RLEEERRLAYVGVTRAMQ 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + K + + +++ Sbjct: 609 KLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 647 >gi|237727929|ref|ZP_04558410.1| DNA helicase II [Citrobacter sp. 30_2] gi|226910378|gb|EEH96296.1| DNA helicase II [Citrobacter sp. 30_2] Length = 738 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 184/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLTDFP----- 290 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST +IL+ + + G L Sbjct: 291 ---GAETIRLEQNYRSTNNILSAANALIENNNGRLGKK---------------------L 326 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 327 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 367 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 368 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ LDE + T + Sbjct: 479 FMELIDALAQETADMPLHVQTDRVIKDSGLRMMYEQEKGEKGQTRIENLDELVTATRQFS 538 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRAT 667 >gi|72162979|ref|YP_290636.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX] gi|71916711|gb|AAZ56613.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX] Length = 754 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 113/619 (18%), Positives = 205/619 (33%), Gaps = 126/619 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 Y++ + +DF+DLI+ T LL+ + + + H+L+DE QD Sbjct: 171 RALAEAYQLYQQRLYEAGAMDFDDLIMVTVHLLQ---MFPEVAEHYRRRFRHLLVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +IR L D + + L VGD QSIY+F GA + +L +R + Sbjct: 228 TNHAQYALIRELVGD----GDPATPGPELCVVGDADQSIYAFRGATIRNILEFERDYPQ- 282 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + I L ++RST IL+ + V + + + S Sbjct: 283 -------ATTILLEQNYRSTQTILSAANAVIAHNTERRPKNLWS---------------- 319 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 +Q + D + A + I + T Sbjct: 320 ------------AQGEGEPIVGYVADDERDE-------ATFVVQEIDALTDAGT------ 354 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D+ V R + ++ + + + I+D++A R Sbjct: 355 ---CTPGDVAVFYRTNAQSRVLEEVF----VRTGMPYRIVGGVRFYERKEIRDILAYLRV 407 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISK 480 + + ED +S +L P E I E T + +++ A + Sbjct: 408 LANPEDSVSLRRILNVPKRGIGERAEQVIEQFAAQERITFAQALRRADEAPGIATRSLKA 467 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 + + + EL +A SP + +L ++ ++ + ++ L+EF+ Sbjct: 468 IKEFVALLEELEELAATRSPAETIEAVLERTGYLEELVNSKDIQDESRVENLEEFVGVAR 527 Query: 538 RNEQNSYSSLQE---------------LISELEQ----YPPTIKRAHSANHNEVRIMTVH 578 E + ++L L+ LEQ V +MT+H Sbjct: 528 EFESSFDAALAAEGADGETGRDGAEPTLVDFLEQVSLIADTDQLPDEDDQGGAVTLMTLH 587 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE PVVFL VF H L Sbjct: 588 SAKGLEFPVVFLTGLEDGVFPH----------------------------------LRAL 613 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 +S EE RL+YVG+TRA ++L + + + S+ + + + ++ Sbjct: 614 GDRSALEEERRLVYVGITRAQERLYLTRAATRSSWGAAAYNPPSRFLDEIPAELVTWRRA 673 Query: 699 KLTNSINKDEWIAYEWSTH 717 + T + S Sbjct: 674 ESTTEALRRSVSPARTSRP 692 >gi|283787510|ref|YP_003367375.1| DNA helicase II [Citrobacter rodentium ICC168] gi|282950964|emb|CBG90641.1| DNA helicase II [Citrobacter rodentium ICC168] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 185/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIRDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|170769888|ref|ZP_02904341.1| DNA helicase II [Escherichia albertii TW07627] gi|170121326|gb|EDS90257.1| DNA helicase II [Escherichia albertii TW07627] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGELISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|281425747|ref|ZP_06256660.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302] gi|281400155|gb|EFB30986.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302] Length = 761 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 104/617 (16%), Positives = 194/617 (31%), Gaps = 123/617 (19%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + + K + Y++ +K +DF+DL++ L K+ D Sbjct: 151 LPDLYAQDQAALKRDNHNHQPEIYK-IYQTYQQRCQKANAMDFDDLLVLIWRLFKEHDD- 208 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 IR K ++ ++L+DE QDT+ +Q ++ L+++ R + VGD+ QSI Sbjct: 209 --IRKKYAEQFKYVLVDEYQDTNFVQQCIVLQLSQE----------HRRVCVVGDDAQSI 256 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y F GA +L ++I + + +L ++RST I+ + + + Sbjct: 257 YGFRGANIDNILDFQKIYPE--------TRLFKLEQNYRSTQHIVQAANSLIQHNK---- 304 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 I G + V S + A Sbjct: 305 ------RQIPKDVFSCNDKGERLILRPVYSDKE-------------------------EA 333 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + I + + +L R + R I Sbjct: 334 AVVCRYIKRLKQKE---------NFNYDSYAILYRTNSQSRSFEEEMR----RQSIPYRI 380 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465 IKD++A + + ED+ + ++ P + + KI + + Sbjct: 381 FGGMSFYQRKEIKDILAYFHMVANPEDEEAIRRIINYPTRGIGDTTVAKIAACAQANDVS 440 Query: 466 VYE-------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++ Y N ++K + + I I + + T I+ K Sbjct: 441 FWQIVNSPVKYGLNVTNSTVNKLRSFAELISSFIEKSASTDAYQLGTTIIQKSKINADIF 500 Query: 519 SRFGNE---VIDVLDEFLNFTLRN-------EQNSYSSLQELISELEQYPPTIKRAHSAN 568 S E + ++EFL+ Q Y+ L + + E+ + Sbjct: 501 SSNDPEALSRQENVEEFLSGLQDFVEGRREEGQEEYTGLTDFLQEVSLLTDVE-SDDDKD 559 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 N+V +MT+H+AKGLE PVVF+V +F Sbjct: 560 GNKVSLMTIHSAKGLEFPVVFIVGMEENIFPSPMSANNPRELEEERRLL----------- 608 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 YV +TRA I+ N K ++D Sbjct: 609 -----------------------YVAITRAEKYCILTCAKNRWRFGKLEFGAPSRFLHDI 645 Query: 689 FHNDERVKKIKLTNSIN 705 + R++ LT+ I Sbjct: 646 DPSFLRIESDNLTDDIP 662 >gi|88606993|ref|YP_505476.1| UvrD/Rep family helicase [Anaplasma phagocytophilum HZ] gi|88598056|gb|ABD43526.1| helicase, UvrD/Rep family [Anaplasma phagocytophilum HZ] Length = 659 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 183/549 (33%), Gaps = 120/549 (21%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 A + Y+E K DF DL+++ +L + + + ++++DE QD Sbjct: 187 FALRVYEEYQERLKALNCADFGDLLLHNVTILSANPD---VLAHYQEHLRYVMVDEYQDI 243 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + IQ+ +R L + L VGD+ QSIY++ GAE +LR Sbjct: 244 NTIQYLWLRLLVR----------RHKNLCCVGDDDQSIYNWRGAEVGNILRFSDDFP--- 290 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +I L ++RST++IL + ++ + Sbjct: 291 -----DAKVIRLECNYRSTSNILASASAIIDNNKSRLKKT-------------------- 325 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW Q+ +FD + A+ I+ I + Sbjct: 326 -LW-------THNQAGQKVGLMKFFDGRLE-------AQYISEHIKSSYD---------- 360 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + + VLVR T + Y I D + I+DL+A + + Sbjct: 361 --YKFSETAVLVRASFQTRVFEEFF----VRYGIPYKIIGGTKFYDRVEIRDLVAYLKVV 414 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKF 481 ++ +D++F ++ P + K+ R + ++ E ++ + Sbjct: 415 VNPNNDIAFEKIINKPKRKLGTSTVNKLRAYGRKHSISLTEAGHSMIKDGLLSDNTSNIL 474 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRN 539 Q ++K + + S + I + G I+ + E + Sbjct: 475 QDLLKQFDDWREMLSRDSSVNVLKAIAHDSGYIESLKKDGESGLSRIENIKELFSAVSGF 534 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + + + + + ++N V +MT+H AKGLE P+VFL VF Sbjct: 535 D-----DVSKFLEHISLVAEND--SLEEDNNYVHVMTLHAAKGLEFPLVFLPGWEEGVFP 587 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H+ EE RL YVG+TRA Sbjct: 588 HEKSMNDITGN--------------------------------ALEEERRLAYVGITRAR 615 Query: 660 DQLIICKHS 668 +QL I + Sbjct: 616 EQLYISCAA 624 >gi|56415805|ref|YP_152880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182420|ref|YP_218837.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617070|ref|YP_001591035.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168233884|ref|ZP_02658942.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238404|ref|ZP_02663462.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244640|ref|ZP_02669572.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263159|ref|ZP_02685132.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822679|ref|ZP_02834679.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444550|ref|YP_002043181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451500|ref|YP_002047963.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470536|ref|ZP_03076520.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734777|ref|YP_002116880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197364735|ref|YP_002144372.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245946|ref|YP_002217880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388338|ref|ZP_03214950.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930325|ref|ZP_03221302.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207859153|ref|YP_002245804.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585766|ref|YP_002639565.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912954|ref|ZP_04656791.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56130062|gb|AAV79568.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130053|gb|AAX67756.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366434|gb|ABX70202.1| hypothetical protein SPAB_04903 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403213|gb|ACF63435.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409804|gb|ACF70023.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456900|gb|EDX45739.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710279|gb|ACF89500.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096212|emb|CAR61809.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197288763|gb|EDY28138.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940462|gb|ACH77795.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605436|gb|EDZ03981.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320729|gb|EDZ05931.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332069|gb|EDZ18833.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336527|gb|EDZ23291.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340965|gb|EDZ27729.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348080|gb|EDZ34711.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710956|emb|CAR35324.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470294|gb|ACN48124.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088361|emb|CBY98121.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613028|gb|EFY09979.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617384|gb|EFY14284.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625624|gb|EFY22446.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627047|gb|EFY23840.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631237|gb|EFY28000.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638270|gb|EFY34969.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642794|gb|EFY39381.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322650351|gb|EFY46764.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656358|gb|EFY52652.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657583|gb|EFY53853.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665994|gb|EFY62175.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666733|gb|EFY62910.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671024|gb|EFY67154.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679269|gb|EFY75321.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681673|gb|EFY77700.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686000|gb|EFY81988.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716913|gb|EFZ08484.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192626|gb|EFZ77854.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196492|gb|EFZ81642.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203756|gb|EFZ88777.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205369|gb|EFZ90343.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210738|gb|EFZ95614.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215906|gb|EGA00639.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221399|gb|EGA05817.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231768|gb|EGA15879.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236183|gb|EGA20260.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239580|gb|EGA23628.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244324|gb|EGA28332.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249579|gb|EGA33491.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250329|gb|EGA34215.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256536|gb|EGA40267.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259766|gb|EGA43399.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265174|gb|EGA48672.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268397|gb|EGA51869.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625668|gb|EGE32013.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 720 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|317056307|ref|YP_004104774.1| UvrD/REP helicase [Ruminococcus albus 7] gi|315448576|gb|ADU22140.1| UvrD/REP helicase [Ruminococcus albus 7] Length = 780 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 96/550 (17%), Positives = 173/550 (31%), Gaps = 113/550 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y++ N +DF+D+I +T L + + +I++DE QDT+ Sbjct: 220 VAKIYKKYQKELLANNAMDFDDIICHTVTLFEN---CPDVLDHYQNLYKYIMVDEYQDTN 276 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q+ ++ L++ F + VGD+ QSIY F GA + +L + R Sbjct: 277 RVQFRLVSLLSQKF----------GNICVVGDDDQSIYRFRGATIENILNFEDEFGCRPE 326 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + +I+L ++RST +ILT +K+ S +G + Sbjct: 327 D------VIKLEQNYRSTQNILTCANKLISNNVGRKGKN--------------------- 359 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + + + + A IA T+S Sbjct: 360 LW-------TDCGDGDKVIVHKSMNERDE-------ASYIAKTVSENNDNGR-------- 397 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D VL R + + I D IKD++A I Sbjct: 398 --RFGDHAVLYRMNAQSNALEQAM----IKAGIPYKIFGGLKFYDRKEIKDILAYLEVIN 451 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQH 483 + D ++ P + + I + Y+ + + Sbjct: 452 NHADMFRLQRIVNEPKRGIGDATVRTIGQVSSDLGEDPIYVMAHSTEYVPLAKKSKALTE 511 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQ 541 I +L +++ S + ++ + G ++ + E + + E+ Sbjct: 512 FAFMIEDLTDLSEEASLPELLDEVVEKTGYGAMMKQQGVEGEMRLENIAELKSTMTKYEE 571 Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 SL+ + E+ Y N + V +MT+H AKGLE PVVF+ VF Sbjct: 572 EAEDPSLEGFLEEVALYTDIDT--LDENSDYVALMTMHAAKGLEFPVVFVAGMEDNVFPS 629 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + YV MTRA + Sbjct: 630 SRSRDSEAELEEERRLA----------------------------------YVAMTRAKE 655 Query: 661 QLIICKHSNT 670 QL + Sbjct: 656 QLHLIYAGER 665 >gi|58616965|ref|YP_196164.1| DNA helicase II [Ehrlichia ruminantium str. Gardel] gi|58416577|emb|CAI27690.1| DNA helicase II [Ehrlichia ruminantium str. Gardel] Length = 639 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 185/558 (33%), Gaps = 122/558 (21%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T+A Y+E K DF DL++ ++ K+ I ++ +I Sbjct: 159 ELNKPINTIALSTYNIYQERLKFLNCADFGDLLLYNIEIFTKQH---NILSHYQEQFKYI 215 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QD + IQ+ +R L + + L VGD+ QSIYS+ GAE +L+ Sbjct: 216 MVDEYQDINTIQYLWLRLLAQ----------KHKNLCCVGDDDQSIYSWRGAEVGNILKF 265 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 I L ++RST++IL V + + ++ G Sbjct: 266 SDDFPN--------AKTIRLECNYRSTSNILEVATAIINNNKSRLGKK------------ 305 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + + + W S + A+ I I N+ Sbjct: 306 ---------LW---TTNQEGNKVNLMKFWDSRIE-----------AQYICEYIKNLHD-- 340 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 Q K+ +LVR T + Y I D I+D Sbjct: 341 ----------YQFKETAILVRAGFQTRIFEEYF----IKYNIPYRIIGSTRFYDRQEIRD 386 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKF 473 ++A + ++ + D++F ++ P N + KI + + + Sbjct: 387 IIAYLKITVNPQHDIAFDRIINKPKRNVGASTLNKIYSYAKQYNTHFLDATKILIENNQL 446 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDE 531 + +++ I+ S + +I + G I+ + E Sbjct: 447 SEKTSRSLNNLLNKINSWKESLLSDSISNTVKMIAYDSGYIDMLENEGESGLARIENIKE 506 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR-IMTVHTAKGLESPVVFL 590 + L ++ + LE + S + + IMT+H AKGLE PVVFL Sbjct: 507 LFSALLNF--------NDVNAFLEHISLVTEVDISNDDDNYTCIMTLHAAKGLEFPVVFL 558 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 VF H ++ EE RL Sbjct: 559 PGWEEGVFPH--------------------------------EKSLQDRTGEALEEERRL 586 Query: 651 LYVGMTRASDQLIICKHS 668 YVG+TRA +QL I + Sbjct: 587 AYVGITRAREQLFISCVA 604 >gi|325288901|ref|YP_004265082.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM 8271] gi|324964302|gb|ADY55081.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM 8271] Length = 745 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 99/648 (15%), Positives = 202/648 (31%), Gaps = 135/648 (20%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 ++ Q +++ F++ + A + Y+ K N LDF+D+I+ T Sbjct: 136 IRAVQGTISDAKNKLLDVNAFEAAATDFFSSAAAKVYRLYQRKLKDNNGLDFDDIIMLTV 195 Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 + +++ + ++ +IL+DE QDT+ Q+ +I L + R L Sbjct: 196 RIFREQPD---VLGYYQEKFRYILVDEYQDTNHAQYLLINLLAK----------RRRNLC 242 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD+ QS+Y + GA+ + +L +R + +++L ++RST IL + V Sbjct: 243 VVGDDDQSVYGWRGADVQNILDFERDYPE--------AKVLKLEQNYRSTGKILEAANAV 294 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 N + + + + + + + + Sbjct: 295 VDHNRNRKKKALWTENPV---------------------------GEELVLYRAENEHDE 327 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 AR + +I+++ T+ + D VL R + ++ Sbjct: 328 --------ARFVCRSINHLKDTEGRSN---------SDFTVLYRTNAQSRVLEEHL---- 366 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 I + L IKD++A R + + D +SF ++ P + KI Sbjct: 367 MKEGIPYRIFSGTKFYERLEIKDILAYLRLVYNPADTVSFARVVNVPRRGIGAGSLEKIL 426 Query: 458 TQRHETE-------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILG 509 E + +YI G+ + ++ A + + +L Sbjct: 427 EYAQEQGMPVLNALSEAQYIPGLQTKGVKALDAFYHLLEDIRRKAGEGLTVTELTESLLS 486 Query: 510 AKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-----------------QNSYSSLQE 549 + + E + L+EFL+ T + Q+ L Sbjct: 487 ETGYLAELRAEDSPEANARLENLNEFLSVTEEFDANLEDDTEEDNENNTGVQDPMPRLAG 546 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 + ++ N + V++MT+H+AKGLE PVVF V +F + Sbjct: 547 FLEQVSLVAEIDHYD--ENEDAVKLMTMHSAKGLEFPVVFTVGLEENIFPSSRSLLEEYL 604 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 YV +TRA ++L + Sbjct: 605 LEEERRL----------------------------------CYVAITRAREKLFLTYTIE 630 Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 + + + + + + Sbjct: 631 RMIYGRIQNSLPSRFLKEIPEQLIFNQSPAAAGREKEASAAEGKVRRD 678 >gi|282881333|ref|ZP_06290013.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis CRIS 5C-B1] gi|281304809|gb|EFA96889.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis CRIS 5C-B1] Length = 808 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 122/773 (15%), Positives = 227/773 (29%), Gaps = 136/773 (17%) Query: 8 SLNESYELIYKDLWPLPYF--QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 + NE E I + + + + + + + + + + Sbjct: 63 AANEMKERIGQLVGHQTARYINMGTFHSIFARILRSEAARV-----GYRSGFTIYDESDS 117 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 SLL + ++ I + + +++ I + ++ Sbjct: 118 RSLLKAII--KEMELDDKIYKPA------GVHAVISNAKNRLISPQSYAANAELMLRDQK 169 Query: 126 SLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184 S + Y + +K +DF+DL++ T L K + IR K + ++L+DE Sbjct: 170 SRRFELHRIYDVYVQRCRKANAMDFDDLLVLTYQLFKTHED---IRQKYVERFRYVLVDE 226 Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 QDT+ Q ++ LT+D + + VGD+ QSIY F GA +L ++I Sbjct: 227 YQDTNYAQQCIVWELTKD----------HQHICVVGDDAQSIYGFRGANIDNMLDFEQIY 276 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 + + +L ++RST I+ + + E I Sbjct: 277 E--------GARLFKLEQNYRSTQHIVKAANSLIKHNE----------RQIPKDVYSEND 318 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 G L++ V S + A + I ++ TD Sbjct: 319 QGEKLLFKPVYSDKE-------------------------EALVVCKDIQRIMRTD---- 349 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 D +L R + I IKD++A Sbjct: 350 -----GATYSDFAILYRTNAQSRSFEEEM----LRQHIPYRIYGGLSFYQRKEIKDILAY 400 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-------NC 476 R +++ +D+ +F ++ P + KI + + ++ I + Sbjct: 401 FRLVVNPDDEEAFKRIINYPTRGIGNTTLQKIAASAQEHGISFWQVIAQAPTLLPTVNKG 460 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +K + I I IL S E + ++E L Sbjct: 461 TQTKLLRFKELIEGFIAQLNQADAFKLGRDILQTSGISTDIYSNNDPEGLARQENVNELL 520 Query: 534 NFTLRN-EQNSYSSLQE---LISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 E L++ L L+ T + + ++V +MTVH AKGLE P V Sbjct: 521 AGLQDYTESKREEGLEQEVYLPDYLQSVALLTDLDSDDGSDSKVSLMTVHAAKGLEFPTV 580 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 F+V +F EE Sbjct: 581 FIVGLEENIFPSPMAIDSPC----------------------------------ELEEER 606 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN-DERVKKIKLTNSINKD 707 RLLYV +TRA I+ N K T + D + + + Sbjct: 607 RLLYVAITRAEKHCILTSAKNRWRYGKLEFDTPSRFIKDIDSRFIHIEAEEETIDESIFA 666 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 + +S + + Q K + ++ + S Sbjct: 667 PYSGSHFSGDGNRRYSDRMQNSRPVASQFQADVKPKITSVQRPEQAVDPFSSS 719 >gi|84393655|ref|ZP_00992406.1| DNA helicase II [Vibrio splendidus 12B01] gi|84375723|gb|EAP92619.1| DNA helicase II [Vibrio splendidus 12B01] Length = 724 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 97/548 (17%), Positives = 185/548 (33%), Gaps = 116/548 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + + Y+EA + ++DF ++++ +++LL+ IR HIL+DE QDT+ IQ Sbjct: 174 IYSAYQEACDRAGLVDFAEILLRSHELLRD---KKHIREHYQARFKHILVDEFQDTNNIQ 230 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R + + VGD+ QSIY + GA+ + + + Sbjct: 231 YAWLRMMAG----------PDCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFP------- 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 S + L ++RST IL +++ S G +LW Sbjct: 274 -GASTVRLEQNYRSTKTILQASNELISNNTERMGK---------------------ELW- 310 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S S ++ L + AR I Sbjct: 311 ------TDGNDGEPISVYSAYNELDE-------ARFTVSKIKEWQEKGGALE-------- 349 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ + + I+D ++ R + ++ Sbjct: 350 --DTAMLYRNNAQSRVLEEAL----IQGGLPYRIYGGMRFFERQEIRDALSYLRLMSNRS 403 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 +D +F ++ +P + + I R T+++ I Sbjct: 404 NDAAFERVVNTPTRGLGDKTLETIRLAARDRGATMWQASIALIEEQVLPGRAAGALSRFI 463 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L H+ ++ + + G + I+ L+E + T + E+ Sbjct: 464 ELINALEDDTIELRLHEQTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKP 523 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L + L + + V++MT+H+AKGLE P+VF+V +F Sbjct: 524 EEADEMSMLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPS 583 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + EE RL YVGMTRA + Sbjct: 584 QMS----------------------------------AEEAGRLEEERRLCYVGMTRAME 609 Query: 661 QLIICKHS 668 +L I Sbjct: 610 KLYITYAE 617 >gi|306843240|ref|ZP_07475850.1| DNA helicase II [Brucella sp. BO2] gi|306286563|gb|EFM58142.1| DNA helicase II [Brucella sp. BO2] Length = 863 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 112/699 (16%), Positives = 197/699 (28%), Gaps = 156/699 (22%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPR----------------------------------TL 216 Q+ +R L + + + L Sbjct: 269 AQYLWLRLLAQRPQTRNTAPDTAQGRNAPIQPARASEPMRGPRGAGERSELGVSENKVNL 328 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD+ QSIY + GAE +LR ++ +I+L ++RSTA IL Sbjct: 329 CCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAH 380 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 + + E G + + + + + +DS Sbjct: 381 LIAHNEGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSE 414 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + AR + I + +N + +LVR L Sbjct: 415 EE-------ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL 457 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 ++ + L I+D MA R + DDL+ ++ +P E I +I Sbjct: 458 ----GLNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQI 513 Query: 457 C-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 R +++ + S + V++ + + IL Sbjct: 514 HDYARARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILD 573 Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + E ++ L E + E L LE + + Sbjct: 574 ESGYTAMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQN 625 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 + + V IMT+H+AKGLE VFL +F H+ Sbjct: 626 EDMDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQR------------------------ 661 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 + +S EE RL YVG+TRA L I SN Sbjct: 662 --------ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------I 699 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 + E E + + Sbjct: 700 HGMWQSTIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRA 759 Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 +N + S ++ + RG + Sbjct: 760 QQNRSDATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 798 >gi|302187828|ref|ZP_07264501.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae 642] Length = 727 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 121/684 (17%), Positives = 220/684 (32%), Gaps = 125/684 (18%) Query: 23 LPYFQVSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81 I + + +S T A L +A + L F Q Sbjct: 68 AAAEMRHRIEQLMGISPAGMWGGTFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQ 121 Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 + ++ + + + D + + FI + + + S LT K + YE Sbjct: 122 QRLVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEI 181 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 A ++ V+DF +L++ DL + + + H+L+DE QDT+ +Q+ +R L Sbjct: 182 ACQRAGVIDFSELLLRALDLWRDNPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLL 238 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 + +L VGD+ QSIY + GA+ + + + +I Sbjct: 239 AQ----------GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFP--------DTEVIR 280 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L ++RSTA IL + + G +LW Sbjct: 281 LEQNYRSTASILKAANGLIINNSGRLGK---------------------ELW-------T 312 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 + + + + F+ + AR + TI + + T I DI +L Sbjct: 313 DVGDGELINLYAAFNEHDE-------ARYVVETIESALKTG----------ISRNDIAIL 355 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 R + ++ +I + IK+ MA R + + +D + Sbjct: 356 YRSNAQSRVLEEAL----LRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALER 411 Query: 440 MLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELI 492 ++ P E + I RH +++E ++ + I+ I L Sbjct: 412 VINVPARGIGEKTVEAIREHARHADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLA 471 Query: 493 HIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQ 548 H ++ +Q G ++ L+E ++ E + L Sbjct: 472 AKVMEMPLHLMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLT 531 Query: 549 ELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 L + L + + +++MT+H+AKGLE P VFLV +F HK + Sbjct: 532 PLAAFLGHASLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEP 591 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667 EE RL YVG+TRA QL++ Sbjct: 592 G----------------------------------RLEEERRLAYVGITRAMKQLVMTYA 617 Query: 668 SNTSNEKKSNQRTWYDMVYDSFHN 691 V + Sbjct: 618 ETRRLYGSETYNKVSRFVREIPPA 641 >gi|118595284|ref|ZP_01552631.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] gi|118441062|gb|EAV47689.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] Length = 725 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 99/550 (18%), Positives = 189/550 (34%), Gaps = 122/550 (22%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ K V+DF +L++ +L + + + IR HIL+DE QDTS + Sbjct: 177 AIYKAYEDQCLKEGVVDFAELLLRCLELFQNKPM---IREHYQSIFKHILVDEFQDTSKL 233 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+E ++ LT +FAVGD+ QSIY F GA P + ++ Sbjct: 234 QYEWLKLLTA----------KNSFIFAVGDDDQSIYGFRGARPGNMKDLQKDF------- 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + +II+L ++RS +IL + + + G + LW Sbjct: 277 -KINNIIKLEQNYRSKNNILNAANAIIENNADRLGKN---------------------LW 314 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ + + D I I + + + Sbjct: 315 S------EAGDGDLIRQYNALDDRFETS--------YILDEIKGLHRSGS---------- 350 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + I +L R + +I I + IK +A R I ++ Sbjct: 351 RYDQIAILYRNNAQSRVIEMAM----VSNNIPYRVYGGLRFFERAEIKSSLAYLRLITNK 406 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS-KFQHVIKYIH 489 +DD +F+ ++ P + I E ++++ ++ + + K + I Sbjct: 407 KDDTAFLRIINFPPRGIGAKALELIQDVANAEKISLWQSAERIESENKNTKISFFVHLIR 466 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN--------- 539 + + + + I + + + G+ I+ LDE ++ Sbjct: 467 HIEDQIEGNNIDESIDFINSYSTLKDHYGKDKDGSSRIENLDELVSAAKAYINEFREENT 526 Query: 540 EQNSYSS----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 E S S L + + + SA + +++MT+H++KGLE VF+ Sbjct: 527 ENESGDSKASILSDFLDFTSLESGEL--QASAGDDALQLMTIHSSKGLEFDTVFITGLEE 584 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + H+ + + EE RL+YV + Sbjct: 585 GLCPHERSLS----------------------------------ENNGLEEERRLMYVAV 610 Query: 656 TRASDQLIIC 665 TRA +L + Sbjct: 611 TRARQKLYLT 620 >gi|317124193|ref|YP_004098305.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043] gi|315588281|gb|ADU47578.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043] Length = 854 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 111/736 (15%), Positives = 220/736 (29%), Gaps = 151/736 (20%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P V + + + ++ + Sbjct: 139 AAAEMRERVEALVGPRARSMWVMTFHSACVRILRREAAKV-----GMKSTFSIYDAADSL 193 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L+S P K + + + +LK L + ++ + + + + T+++ Sbjct: 194 RLMSLVIRDLDLDP-KRYAPRSFSAQVSNLKNDLVDEETYAAQVGEGTSAHSHHERTMSA 252 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+D+I+ T ++L+ + + HIL+DE Q Sbjct: 253 A------YTQYQRRLRQANALDFDDIIMMTVNMLQ---AFPDVAEYYRRRFRHILVDEYQ 303 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 DT+L Q+++I+ L D G P L VGD QSIY+F GA + +L ++ Sbjct: 304 DTNLAQYQLIKELVGDGVRGPGEGDYVVPPAELCVVGDSDQSIYAFRGASIRNILEFEQD 363 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 I L ++RST IL + V + E + + Sbjct: 364 YP--------DARTILLEQNYRSTQRILRAANSVIARNEARRAKN--------------- 400 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 LW + + + A +A I + Sbjct: 401 ------LW-------TDSGDGALIVGYVADNEHDE-------AAFVAKQIDELAEHG--- 437 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 ++ D+ + R + I + + + +KD +A Sbjct: 438 -------VRPGDVAIFYRTNAQSRAIEEVL----VRVGLPYKVVGGTRFYERREVKDALA 486 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANC 476 R I + D ++ +L P + + + E A Sbjct: 487 YLRVISNPTDTVNLRRILNVPKRGIGDRAEACVAMLAERERIPFVAALGRAEDAPGIATR 546 Query: 477 GISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 ++ + + EL + + + L + + + ++ L E Sbjct: 547 SVAAIKGFTSLLEELRTVYESGAGIAVLLEATLEQSGYLAELRASHDPQDETRVENLAEL 606 Query: 533 LNFTLRNEQNSYSS------------------------LQELISELEQYPPTIKRAHSAN 568 + ++ L+E + ++ + S Sbjct: 607 VAVAQEYDERRAEEFAVAAIEGGLAPGEEPEDVGPTGPLEEFLEQVSLVADADEIPDSPE 666 Query: 569 HNE------VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622 + V +MT+HTAKGLE PVVFL F H Sbjct: 667 ADAGPDLGVVTLMTLHTAKGLEFPVVFLTGLEDGTFPHSRSMGDP--------------- 711 Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682 EE RL YVG+TRA ++L + + + S Sbjct: 712 -------------------KELEEERRLAYVGITRARERLYLTRAAVRSAWGAPQYGAPS 752 Query: 683 DMVYDSFHNDERVKKI 698 + + + +++ Sbjct: 753 RFLDEIPDDLLDWQRL 768 >gi|206890688|ref|YP_002249662.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742626|gb|ACI21683.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 699 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 102/546 (18%), Positives = 179/546 (32%), Gaps = 123/546 (22%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y+ K+ LDF+DLI+ L + + + + ++ +IL+DE QDT+ Sbjct: 169 LGRIYMRYQNELKRYNALDFDDLILCVIKLFNENED---LLRRYSEQFKYILVDEFQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +++ L + + AVGD+ QSIY F GA +L ++ Sbjct: 226 KSQYMLLQLLCRY----------HKNICAVGDDDQSIYKFRGANIHNILNFEKDFP---- 271 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 I++L ++RST I+ + S + Sbjct: 272 ----DTKIVKLEQNYRSTKHIILASSAMISRNTMRKPKI--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + ++ + + + A+ IA I + Sbjct: 307 LW-------TERDWGEKIFYCQLNNEEEE-------AKYIAKNIKELYLKG--------- 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + KD +L R + R I IKD++A RFIL Sbjct: 344 DYEYKDFAILYRLVLQARALEEALRME----GIPYQVISGVSFYHRKEIKDVLAYMRFIL 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQ 482 ++ED++S + ++ +P I KI + + +E I++ K Sbjct: 400 NKEDNVSLMRIINTPPRGIGASAISKIESEAKKYMISTFEAIKRIIKEDTVSATLKEKLV 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 + I EL + IL ++ + I + EFL+ Sbjct: 460 SFVTLIDEL-SEKDYKDAASMIKDILNFTGYLEEIE----EDRIQNVLEFLSSA------ 508 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 ++E + ++ + N V ++T+H AKGLE PVVF+ + Sbjct: 509 EKMPVREFLDKVALFSNVDTW--ENKKNYVSLLTLHAAKGLEFPVVFIAGCEEGILP--- 563 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 +E RL YVGMTRA + L Sbjct: 564 -------------------------------YFKALEDPFELQEERRLFYVGMTRAKNLL 592 Query: 663 IICKHS 668 I Sbjct: 593 FITSVK 598 >gi|58578906|ref|YP_197118.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] gi|58417532|emb|CAI26736.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] Length = 639 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 186/558 (33%), Gaps = 122/558 (21%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T+A Y+E K DF DL++ ++ K+ I ++ +I Sbjct: 159 ELNKPINTIALSTYNIYQERLKFLNCADFGDLLLYNIEIFTKQH---NILSHYQEQFKYI 215 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QD + IQ+ +R L + + L VGD+ QSIYS+ GAE +L+ Sbjct: 216 MVDEYQDINTIQYLWLRLLAQ----------KHKNLCCVGDDDQSIYSWRGAEVGNILKF 265 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 I L ++RST++IL V + + ++ G Sbjct: 266 SDDFPN--------AKTIRLECNYRSTSNILEVATAIINNNKSRLGKK------------ 305 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + + + W S + A+ I I N+ Sbjct: 306 ---------LW---TTNQEGNKVNLMKFWDSRIE-----------AQYICEYIKNLHD-- 340 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 Q K+ +LVR T + Y I D I+D Sbjct: 341 ----------YQFKETAILVRAGFQTRIFEEYF----IKYNIPYRIIGSTRFYDRQEIRD 386 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KF 473 ++A + ++ + D++F ++ P N + KI + + + + Sbjct: 387 IIAYLKITVNPQHDIAFDRIINKPKRNVGASTLNKIYSYAKQYNTHFLDATKILIEDNQL 446 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDE 531 + +++ I+ S + +I + G I+ + E Sbjct: 447 SEKTSRSLNNLLNKINSWKESLLSDSISNTVKMIAYDSGYIDMLENEGESGLARIENIKE 506 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR-IMTVHTAKGLESPVVFL 590 + L ++ + LE + S + + IMT+H AKGLE PVVFL Sbjct: 507 LFSALLNF--------NDVNAFLEHISLVTEVDISNDDDNYTCIMTLHAAKGLEFPVVFL 558 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 VF H ++ EE RL Sbjct: 559 PGWEEGVFPH--------------------------------EKSLQDRTGEALEEERRL 586 Query: 651 LYVGMTRASDQLIICKHS 668 YVG+TRA +QL I + Sbjct: 587 AYVGITRAREQLFISCVA 604 >gi|57238970|ref|YP_180106.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] gi|57161049|emb|CAH57956.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] Length = 639 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 186/558 (33%), Gaps = 122/558 (21%) Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 + T+A Y+E K DF DL++ ++ K+ I ++ +I Sbjct: 159 ELNKPINTIALSTYNIYQERLKFLNCADFGDLLLYNIEIFTKQH---NILSHYQEQFKYI 215 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 ++DE QD + IQ+ +R L + + L VGD+ QSIYS+ GAE +L+ Sbjct: 216 MVDEYQDINTIQYLWLRLLAQ----------KHKNLCCVGDDDQSIYSWRGAEVGNILKF 265 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 I L ++RST++IL V + + ++ G Sbjct: 266 SDDFPN--------AKTIRLECNYRSTSNILEVATAIINNNKSRLGKK------------ 305 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 LW + + + W S + A+ I I N+ Sbjct: 306 ---------LW---TTNQEGNKVNLMKFWDSRIE-----------AQYICEYIKNLHD-- 340 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 Q K+ +LVR T + Y I D I+D Sbjct: 341 ----------YQFKETAILVRAGFQTRIFEEYF----IKYNIPYRIIGSTRFYDRQEIRD 386 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KF 473 ++A + ++ + D++F ++ P N + KI + + + + Sbjct: 387 IIAYLKITVNPQHDIAFDRIINKPKRNVGASTLNKIYSYAKQYNTHFLDATKILIEDNQL 446 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDE 531 + +++ I+ S + +I + G I+ + E Sbjct: 447 SEKTSRSLNNLLNKINSWKESLLSDSISNTVKMIAYDSGYIDMLENEGESGLARIENIKE 506 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR-IMTVHTAKGLESPVVFL 590 + L ++ + LE + S + + IMT+H AKGLE PVVFL Sbjct: 507 LFSALLNF--------NDVNAFLEHISLVTEVDISNDDDNYTCIMTLHAAKGLEFPVVFL 558 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 VF H ++ EE RL Sbjct: 559 PGWEEGVFPH--------------------------------EKSLQDRTGEALEEERRL 586 Query: 651 LYVGMTRASDQLIICKHS 668 YVG+TRA +QL I + Sbjct: 587 AYVGITRAREQLFISCVA 604 >gi|157825751|ref|YP_001493471.1| DNA helicase II [Rickettsia akari str. Hartford] gi|157799709|gb|ABV74963.1| DNA helicase II [Rickettsia akari str. Hartford] Length = 653 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 113/567 (19%), Positives = 190/567 (33%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + L +AK + Y++ + VLDF DL++ N+L K I ++ Sbjct: 159 LSASDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPA---ILRYYQEK 215 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N G + Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW D + + + + + D AR IA I + Sbjct: 310 -------------LW------TDKESGEKIKIISCWSDKEE--------ARYIASEIDKL 342 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + + A +I +LVR T + + + + Sbjct: 343 VREER---------YNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGVRFYERI 389 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRLYALERNISNFASIKEMLE 449 Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 G K + ++ I I +P + IL + E I Sbjct: 450 MGEIKAKQYETLKDLVTKIDNWHEIFNIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L +E ++ V IMT+H AKGLE Sbjct: 510 ENINEMLKAIAEFNDAH--------DFIEHSSLVMENEVLETNYGGAVTIMTLHAAKGLE 561 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL +F + + Sbjct: 562 FDVVFLPGWEEGLFPSQRSLD--------------------------------KDGEKGL 589 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 EE R+ YVG+TRA L I + Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616 >gi|34580461|ref|ZP_00141941.1| DNA helicase II [Rickettsia sibirica 246] gi|28261846|gb|EAA25350.1| DNA helicase II [Rickettsia sibirica 246] Length = 653 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 112/567 (19%), Positives = 190/567 (33%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + L +AK + Y++ + VLDF DL++ N+L K + I ++ Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N G + Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + W+ + AR IA I + Sbjct: 310 -------------LW---TDRESGEKIKIISCWSDKEE-----------ARYIASEIDKL 342 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + A +I +LVR T + + + + Sbjct: 343 VRE---------NRYNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449 Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 G K + ++ I +P + IL + E I Sbjct: 450 IGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF + + Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 589 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 EE R+ YVG+TRA L I + Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616 >gi|269977462|ref|ZP_06184434.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1] gi|306819108|ref|ZP_07452822.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239] gi|269934378|gb|EEZ90940.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1] gi|304648084|gb|EFM45395.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239] Length = 900 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 99/700 (14%), Positives = 201/700 (28%), Gaps = 104/700 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L +V + ++ +TL + Sbjct: 78 GAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERVETLVGNAAKYMWVST 137 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110 F + + +T+ F+ T+ + + + K Sbjct: 138 FHSSCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNA 197 Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ F A L + A Y++ ++ DF+DLI L ++ Sbjct: 198 KNELVEPATFAEMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPE-- 255 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRTLFAVGDE 222 I K + ++L+DE QDT+ Q++++R L D G L VGD Sbjct: 256 -ILAKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS 314 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY+F GA + + ++ + + L ++RST IL+V + + S Sbjct: 315 DQSIYAFRGATIRNIEEFEQDFP--------GATTVYLEQNYRSTGTILSVANAIISENS 366 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + LW ++ P+ + + + Sbjct: 367 GRHKKN---------------------LW------TEAGDGPKAIMFAA--------DTE 391 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A I I + T + V R + + + + Sbjct: 392 RDEAAFIIREIRDAHTAGTP----------WDEFAVFYRTNSQSRALEEML----TRENV 437 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 D IKD +A + DD + + +L P + KI Sbjct: 438 PYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLGDVAQTKIREAARL 497 Query: 463 TETVYEYIQK-----------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGA 510 + T + + + + ++ + L + + + L Sbjct: 498 SGTSFGQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDEAGAPLDEILGTALED 557 Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS 566 + + + I+ L E + S L + + + T + Sbjct: 558 SGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFLERISLVADTDQLPDQ 617 Query: 567 ANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + + M H + V + + ++ +M + + Sbjct: 618 GSKEVAAKEMAPHEPE----TNVSEASGDHPNPAPETKPEVTLMTVHTAKGLEFNTVFVT 673 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + EE RL YV +TRA QL + Sbjct: 674 GMEDGLFPHSRSLDDPEAIEEERRLAYVAVTRARRQLYLT 713 >gi|145218885|ref|YP_001129594.1| UvrD/REP helicase [Prosthecochloris vibrioformis DSM 265] gi|145205049|gb|ABP36092.1| UvrD/REP helicase [Chlorobium phaeovibrioides DSM 265] Length = 1065 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 137/970 (14%), Positives = 304/970 (31%), Gaps = 140/970 (14%) Query: 11 ESYELIYKDLWPLPYFQVSDINKYVSLSMETGN---PTILKKAQTLQQASQTQCIEERFS 67 E E + L + +S + E + + L++AS++ ++ + Sbjct: 189 EDAETLKAALLRAVENTLEAFPLDISNTYELKAGPKKKVWNNYRLLKRASRSTTLDTDWK 248 Query: 68 LLSSF----FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 L F + + + ++ D K+ + + + + Sbjct: 249 LWHKLSQLHFYKKD---------KPLPQEYNDHIVKVIATAERL--VYHPGPLADAQEHA 297 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L A A YE+ K K +LDF D++ + L K+ + + + +++D Sbjct: 298 ARLLRAAGETLAGYEKEKGKRGLLDFMDMLSISYRLFKEHP---EVLALFRRRMECLVVD 354 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDTS +Q+ ++ SL + VGD KQ+I F A+ + + Sbjct: 355 EFQDTSPLQFSLVWSLRKT--------EPTVPAIVVGDVKQAIMGFQNADERLLAEMSNK 406 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 L ++RS+ +++ +++V + + T + ++ Sbjct: 407 YPTS-----------PLEGNWRSSPELMRWINQV------GGAMFHEGYTALEAKAKFRS 449 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + +++ + + A I +I T Sbjct: 450 SMEPLEIIAAAEPLKE-----------------------AAWASYTVNRIQELIATKQQV 486 Query: 364 SNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + K R I+ DI ++ K K R I + L D ++ Sbjct: 487 WDKKLNVPRDIRGGDIAIICYKNKRLTFYAEALR----KAGIRCRLEEEGWL-DSRIVQL 541 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 ++ D L + T E V + Sbjct: 542 AWQCLAYVADPGDR---HAALYLASTELGTGSLQSALTGLMEGGAVGD------------ 586 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRN 539 +++ + + + + I+ G E L + + ++ Sbjct: 587 --RILEKLEGVAERPKDRTVDAILDDIVTTLDLYGTITGWPDGAEARADLLKLQDECIQF 644 Query: 540 EQNSYSSLQE----------LISELEQYPPTIKRAHSA----------NHNEVRIMTVHT 579 +S +L ++ L+ A + V++MT H Sbjct: 645 MTSSREALSSGGYYGSGIKTFLAWLKAKMEATDSAGRENNTRPSPSIIDEEAVQLMTWHK 704 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---PGIPIWIPQSKSRNNIVSDLI 636 +KG E PVV + F K+ + D + I S + Sbjct: 705 SKGGEWPVVAVCGMDDGEFPRLPNTKVDYDDFSDLDTIMDHAWVRIHPKFSSKEKNDAFV 764 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 + LK + E RLLYV +TRA +++I+ Q T++ + + K Sbjct: 765 EDLKPESHENTKRLLYVALTRAREKVILEWPEYLPKTNGKWQGTYWAEFCRAAKAEVTPK 824 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 + + T E E ++ + P+ + P Sbjct: 825 GMSIKGVEFSCPVSTITLKT-GIEIEAASTESSLPVFGRRAIRRSTMPEPLTPEAVRPSS 883 Query: 757 L-NPSTIDTKGKTNLESLLSD-------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808 L N S + ++ + +G I+H+ +++ PE + Sbjct: 884 LHNDSGAAGTPREDIRYGKGFAIDIPGVDDPMEKGKILHRAFELLSGHPERE-----ELL 938 Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGKINCPKKDIIISGR 867 L + K + ++ + + + + + +E+ + + +++G Sbjct: 939 AGAFEGLLAPGQLKPVYEAVRAF--DSWLGSRFTAITRHAELPL---LALDASGSVVAGF 993 Query: 868 IDQISISQQNIFIFEYKTHHHVPQE-IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI- 925 D + ++ ++I ++K+ E +E ++ QL Y L + P+K + L++ Sbjct: 994 TDLVVETEDALWIVDHKSDQVKTDELLEERFNIYLPQLRCYADALAAARPDKPVKGLMLN 1053 Query: 926 YVSEPKVFII 935 +VS K+ ++ Sbjct: 1054 WVSFGKISVV 1063 >gi|163839113|ref|YP_001623518.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209] gi|162952589|gb|ABY22104.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209] Length = 797 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 118/773 (15%), Positives = 225/773 (29%), Gaps = 141/773 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E I + +S + + T+ L + + Sbjct: 90 AAAEMRERIAALIGDAAKNMWISTFHSSCVRILRREASTV-----GLNSSFSIYDSADSL 144 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K LK +L D F Sbjct: 145 RLITLIARGLDLDP-KRFAPKAMQHKISALKNELIDDDAFAATATDPFEQG--------- 194 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + Y + ++ LDF+DLI T L + + + H+++DE Q Sbjct: 195 ---VAEVYRGYTQRLRQANALDFDDLIAQTVWLFR---AFPGVADYYRRRFRHVMVDEYQ 248 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ +++ + + + P L VGD QSIY+F GA+ + ++ ++ Sbjct: 249 DTNHAQYALVKEIVG---PAEGSGDEPAELTVVGDSDQSIYAFRGADIRNIVEFEKDYPN 305 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I+L ++RST IL+ + V + Sbjct: 306 --------ARTIKLEQNYRSTQTILSAANAVIEKNPDRPVKR------------------ 339 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW ++ + ++ + + AR IA I + Sbjct: 340 ---LW-------TAEGDGEKIIGYVAENEHEE-------ARFIAEEIDRLQDEA------ 376 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D+ + R + I + + + IKD +A R Sbjct: 377 ---DFRPGDVAIFYRTNAQSRSIEEIL----MRVGLPYRVVGGTRFYERKEIKDALAYLR 429 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-------NCGIS 479 +++ EDD++ +L P + + + + + A ++ Sbjct: 430 VLVNPEDDVNLRRILNEPKRGIGDRAEGAVAALAERERSSFMAALRHAEDAPAIATRSLN 489 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 +K I +L +A +L + + + ++ L E + Sbjct: 490 AVNGFVKLIDDLTEVASTSGAATALEAVLEQTGYLETLRASSDPQDESRVENLAELVAVV 549 Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNE------------VRIMTVHTAKGL 583 E++ SL + + + + + + V +MT+HTAKGL Sbjct: 550 REYERDKPEGSLTDFLEGVALVADADQIPDAPGSDTEAAVAEARRLGVVTLMTLHTAKGL 609 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P VFL +F Sbjct: 610 EFPAVFLTGMEHGIFPQ----------------------------------ARSATDAKE 635 Query: 644 QEEYNRLLYVGMTRASDQLIICKHS---NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 E RL YVG+TRA +L + + + + + D V + +R + Sbjct: 636 LAEERRLAYVGLTRARKRLYLTRAEVRSLWGQSQYNPASPFIDEVPANLIEWKREGMSRA 695 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 SI + +S H QL P K Sbjct: 696 IPSIGSSGFGRDRYSGSHWGAGSAVGGRDAGQLPPSLATRSARVQPQKEIPQL 748 >gi|331685533|ref|ZP_08386117.1| DNA helicase II [Escherichia coli H299] gi|331077234|gb|EGI48448.1| DNA helicase II [Escherichia coli H299] Length = 720 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRVHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|89069676|ref|ZP_01157013.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516] gi|89044756|gb|EAR50862.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516] Length = 794 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 106/640 (16%), Positives = 197/640 (30%), Gaps = 121/640 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ K+ +DF DL+++ + ++ + + + +IL+DE QDT++ Sbjct: 196 ALYAQYQARLKELNAVDFGDLLLHVVTIFQQ---RPDVLEQYQRWFRYILVDEYQDTNVA 252 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L R + VGD+ QSIY + GAE +LR ++ Sbjct: 253 QYLWLRLLAG----------GHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 296 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL V + + G + Sbjct: 297 --GAEVVRLEQNYRSTGHILAAASGVIAANKGRLGKTLF--------------------- 333 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ ++D + AR I I M G + Sbjct: 334 -------TDGEDGEKVRLIGHWDGEEE-------ARWIGEEIEAMQGG-----TRGMAPV 374 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ +LVR + + + I+D MA R +S Sbjct: 375 SLDDVAILVRASHQMRGFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLAVSP 430 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484 +DDL+F ++ +P + + I R ++ E + G + +++ Sbjct: 431 DDDLAFERIVNTPKRGLGDKAVQTIQRTARANGVSLVEGARLAVEAALLKGKGAKELRNL 490 Query: 485 IKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 ++ + A+ + + +IL + + E ++ L E + Sbjct: 491 VQSLDRWHAQVRAEADTHVELAEMILDESGYTGMWQADKTPEAPGRLENLKELVKALEGF 550 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L LE + + +V IMT+H AKGLE P VFL +F Sbjct: 551 DN--------LQGFLEHVALIMDNETEEHGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 602 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 603 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 630 Query: 660 DQLIICKHSNTSN----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 I +N + R ++ D Sbjct: 631 RLCTISFAANRRVYGQWQSALPSRFIDELPEDHVDVLTPPGLYGGGYGAAGMAGGLGVTG 690 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + T R+ +++ + + E Sbjct: 691 GLNDAMTQRVRDADGYNSPGWKRLQSRSQQRGMSQPRESR 730 >gi|157158058|ref|YP_001465297.1| DNA-dependent helicase II [Escherichia coli E24377A] gi|157080088|gb|ABV19796.1| DNA helicase II [Escherichia coli E24377A] Length = 720 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRVHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|239943694|ref|ZP_04695631.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|239990145|ref|ZP_04710809.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] gi|291447158|ref|ZP_06586548.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998] gi|291350105|gb|EFE77009.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998] Length = 812 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 118/709 (16%), Positives = 222/709 (31%), Gaps = 134/709 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 126 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 180 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + K +LK +L + F+ T Sbjct: 181 RLMALVCRDLDLDP-KRYPPKSFTAKVSNLKNEL------IDEETFAGQAADGFEKT--- 230 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 231 ---LAQAYALYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 284 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ ++R L + +P L VGD QSIY+F GA + +L+ + Sbjct: 285 DTNHAQYTLVRELVG----PAGENDAPAELCVVGDADQSIYAFRGATIRNILQFEEDYP- 339 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 + I L ++RST IL+ + V E+ + + Sbjct: 340 -------SATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 374 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + + + + A+ +A I + Sbjct: 375 ---LW-------TNAGSGARITGYVADTEHDE-------AQFVADEIDRLTDKG------ 411 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +A D+ V R + + + + + ++D++A R Sbjct: 412 ---DAKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 464 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482 + + ED + +L P + I E + + +++ + Sbjct: 465 VLANPEDTVPLRRILNVPKRGIGDRAEAMIDALSMREKISFPQALRRVDEAYGMAARSSN 524 Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + EL I + + P +L + + + I+ L E Sbjct: 525 AVKRFNTLMEELRTIVESGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 584 Query: 536 TL-----RNEQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 L R E+ +L E + + L I + +MT+HTAKGLE PVV Sbjct: 585 ALEFEQERGEEEGAGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVV 644 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FL VF H + EE Sbjct: 645 FLTGLEDGVFPHMRALG----------------------------------QTKELEEER 670 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 RL YVG+TRA ++L + + + S + + + + K+ Sbjct: 671 RLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPEAHLEWKR 719 >gi|77461864|ref|YP_351371.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf0-1] gi|77385867|gb|ABA77380.1| DNA helicase II [Pseudomonas fluorescens Pf0-1] Length = 727 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 116/641 (18%), Positives = 208/641 (32%), Gaps = 124/641 (19%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + LS F Q+ ++ + I + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S L + + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYEAACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + HIL+DE QDT+ +Q+ +R L +L VGD+ Sbjct: 205 HPG---LLAHYQKRFRHILVDEFQDTNAVQYAWLRLL----------GKGGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + I L ++RSTA IL + + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFPDSV--------TIRLEQNYRSTAGILKAANALIANNT 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDGGDGEAINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T + DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGIGEKTVEAIRDHARH 434 Query: 462 ETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E + + I+ I L H ++ Sbjct: 435 SDVSMWEAMGQLVANKGLTGRAAGALGAFIELIENLAAKCAEMPLHLMTQTVIEQSGLIA 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570 + G ++ L+E ++ E L L + L + + Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARNFENTEEDEELTPLAAFLGHASLEAGDTQADEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA L++ Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVMTYAETRR 621 >gi|330961415|gb|EGH61675.1| DNA-dependent helicase II [Pseudomonas syringae pv. maculicola str. ES4326] Length = 727 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 118/641 (18%), Positives = 212/641 (33%), Gaps = 124/641 (19%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANALIVNNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEYDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHEE 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA QL++ Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRR 621 >gi|225012823|ref|ZP_03703257.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] gi|225003097|gb|EEG41073.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] Length = 775 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 110/710 (15%), Positives = 229/710 (32%), Gaps = 130/710 (18%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFK-STLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K ++ ++ ++ I ++ FN + + T++ + Y K +DF+ Sbjct: 140 KYKQVRSRISAFKNSLITVKAYFNDLDLQESDTMSKRPQMGEIYKEYVARCFKAGAMDFD 199 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K +IL+DE QDT+ Q+ ++R+L++ Sbjct: 200 DLLLRTNELLNRYPE---VLAKYQDRFRYILVDEYQDTNHSQYLIVRALSD--------- 247 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIY+F GA +L ++ ++ L ++RST I Sbjct: 248 -RYQNICVVGDDAQSIYAFRGANINNILNFQKDYD--------GVALYRLEQNYRSTKTI 298 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + S + +W Q Sbjct: 299 VNAANSIISHNKTKIDKV---------------------VWTSNTEGESIQ--------- 328 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 + + ++ + R IA +I F + + D +L R + + Sbjct: 329 -----VNRLATDAEEGRHIASSI---------FDFKMQEQRKNADFAILYRTNAQSRAME 374 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD++A R +++ +D+ S ++ P + Sbjct: 375 DALR----KRDIPYRIYGGLSFYQRKEIKDILAYLRILVNPKDEESLKRIINYPPRGIGQ 430 Query: 451 DDIFKICTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ + + E + K I + + + Sbjct: 431 TTVDKLVVASKHHDLPFFETIVKAKELQLPLNAGTLLKLSEFSTLIQRFQIENETLNAFE 490 Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISE 553 L+ Q+ E I+ ++E LN + SL E + + Sbjct: 491 VTDLVTKKIGLVQELKKDATPEGIARIENIEELLNGIRDFTEGQEELADANGSLSEFLED 550 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + + + N + V +MT+H AKGLE P VF+V +F Sbjct: 551 VAL-ATDLDKDDDPNSDRVALMTIHLAKGLEFPYVFIVGLEEDLFPSAMSLNT------- 602 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 ++ EE RL YV +TRA ++ + + Sbjct: 603 ---------------------------RTELEEERRLFYVALTRAEERAFLSYTLSRYRW 635 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 K + E + L + K+++ + P + + Sbjct: 636 GKLIDAEPSRFI-------EEIDPQYLNKVVPKNDYSFKPLLNTSIFDEPTPQRQW-SNN 687 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783 + + K + +P + + + + P+ + + + + G Sbjct: 688 IKKTPKEKLITTPTSSQLKKLRKIEPTATIKSEDVIVLAEGMEVEHARFG 737 >gi|256420067|ref|YP_003120720.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] gi|256034975|gb|ACU58519.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] Length = 783 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 100/698 (14%), Positives = 202/698 (28%), Gaps = 133/698 (19%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + + + A+ + L Y + KN +DF+DL+ LLK + +K Sbjct: 159 QHDYAVQQEDMRANRPMTGKLYDMYAKRCFKNGAMDFDDLLFKMYQLLKSFPE---VLHK 215 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + +I+IDE QDT+ Q+E+I+ L ++ + VGD+ QSIYSF GA Sbjct: 216 YQHKFKYIMIDEYQDTNPAQYEIIKLL----------GAAHENICVVGDDAQSIYSFRGA 265 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +L+ ++ +++L ++RST IL V ++V + + + Sbjct: 266 TIQNILQFEKDYD--------DAKVVKLEQNYRSTKSILNVANEVIANNKGQIEKN---- 313 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + ++ + + +A T Sbjct: 314 -----------------LW-------TDNADGEKIKLVRTMTDNEEG-------KFVADT 342 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I+ + +D +L R + R I Sbjct: 343 IAE---------QKLRNHYANRDFAILYRTNAQSRAFEENLR----RKAIPYRIFGGLSF 389 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY---- 467 IKD +A R + + +++ S ++ P+ + + K + T + Sbjct: 390 YQRKEIKDFIAYLRIVTNPQEEESLKRIINYPVRGIGKTTVDKCSVIANDQNITFWNVLE 449 Query: 468 -EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-- 524 F + + + + I + + +D + + ++ + E Sbjct: 450 RAREFGFKSGTLEAIEGFVIMIRSFQAMLGKHNAYDIALQVGKSTNLVKELFNDKTTEGL 509 Query: 525 -VIDVLDEFLNFTLRNEQNSYSSLQ------ELISELEQYPPTIKRA--HSANHNEVRIM 575 + + E LN + + L S L+Q + + + V++M Sbjct: 510 ARYENIQELLNSIKEFTETPTEDGELLEAEKSLGSYLQQITLLTDADKGNDEDSDVVKLM 569 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE PVVF V +F Sbjct: 570 TIHAAKGLEFPVVFSVGLEENLFPSGLSINSREELEEERRL------------------- 610 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 YV +TRA +L + ++ + + + Sbjct: 611 ---------------FYVVITRAKSRLFLTYANSRYRFGQLVNNESSRFLEEMPEKYIDR 655 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + ++ + + + + Sbjct: 656 SY------AGGSGVNRSPINNGGGLWGNSGGGNMFDRMQKKTPQSSQQPAGPRPAPKPMQ 709 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN-------RGLII 786 PST + + G I Sbjct: 710 TAMPSTHVPSPNFTPDDPATMEAGMEVEHQKFGFGTIT 747 >gi|305667011|ref|YP_003863298.1| putative helicase [Maribacter sp. HTCC2170] gi|88709246|gb|EAR01480.1| putative helicase [Maribacter sp. HTCC2170] Length = 787 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 99/595 (16%), Positives = 199/595 (33%), Gaps = 119/595 (20%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K ++ ++ ++ I ++ ++ ++ + + HY + K +DF+ Sbjct: 147 KYKQVQNRISSYKNSLITVKAYMQNPELVEADAMAKRPRLGEIYQHYVDRCFKAGAMDFD 206 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL + + K +IL+DE QDT+ Q+ ++++L + Sbjct: 207 DLLLRTNELLNRHPE---VLMKYQDRFRYILVDEYQDTNHSQYLIVKALAD--------- 254 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + VGD+ QSIYSF GA +L +R + + L ++RST +I Sbjct: 255 -RYHNICVVGDDAQSIYSFRGANISNILNFQRDYEN--------VGMYRLEQNYRSTKNI 305 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + + +N +W ++ P + Sbjct: 306 VNAANSIIAKNKNQLEKV---------------------VW------TENDDGPAIKVHR 338 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 S D+ R +A +IF N + + + +L R + + Sbjct: 339 SITDAEEG--------RFVA---------GSIFENKMQNQLLNGEFAILYRTNSQSRAME 381 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD+++ R +++ +D+ + ++ P + Sbjct: 382 DALR----KRDIPYRIYGGLSFYQRKEIKDVLSYLRLVINTKDEEALKRVINFPARGIGQ 437 Query: 451 DDIFKICTQRHET--------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502 + K+ + E + K + K + + I + + Sbjct: 438 TTVDKLVVAANHYGRSIFEVIENLDRINLKINSGTKRKLEDFVTMIKSFQIMGESNDAFT 497 Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSSLQELISELEQ 556 + +F E ++ ++E LN ++ + + LE Sbjct: 498 LAEHVAKKSGILLEFKKDGTPEGIGRMENVEELLNGIKDFVEGQKELADATGNISEFLED 557 Query: 557 YPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 T + + V +MT+H AKGLE P V++V +F Sbjct: 558 VALATDMDKDMGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFPS--------------- 602 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + +S EE RL YV +TRA Q + N Sbjct: 603 -------------------AMSMNTRSELEEERRLFYVALTRAEKQAYLTYTQNR 638 >gi|225023801|ref|ZP_03712993.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC 23834] gi|224943456|gb|EEG24665.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC 23834] Length = 720 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 116/764 (15%), Positives = 237/764 (31%), Gaps = 147/764 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L Q S + + + + + + Sbjct: 21 GAGSGKTKVLTTRIAWLLHSGQASLHSVMAVTFTNKAAKEMRARLEAMLPLNIRAMWLGT 80 Query: 66 FSLLSSFFL----TQKFTPQKN---------IITQEINKKSPDLKEKL--KKSQDEFIKI 110 F L FL + P + + + K +E + + Q Sbjct: 81 FHGLCHRFLRLHHKEAGLPAAFQILDSSDQLALVKRLLKALNISEEIIAPRALQGFINAQ 140 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 ++ + ++ A Y+ ++ V DF +L++ + ++L+ ++ +R Sbjct: 141 KEAGLRAAVLHASNPFEQRLIECYAEYDRLCRQEGVADFAELMLRSYEVLQSNEI---LR 197 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 NHIL+DE QDT+ +Q++ ++ L +FAVGD+ QSIY F Sbjct: 198 THYQNRFNHILVDEFQDTNKLQYDWLKLLAGQ----------HAAVFAVGDDDQSIYRFR 247 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + R Q + I+L ++RS +IL + V + + G + Sbjct: 248 GARVGNMADFMREFQVASP--------IKLEQNYRSVGNILAAANAVIAHNDGRLGKNL- 298 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + +++ + +++ D A + Sbjct: 299 --------------------------RTEAEHGEKIRFLSAFTDGEE--------AEFVV 324 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + + VL R + ++ + Sbjct: 325 EEIKALHRDGMDLAQT----------AVLYRSNAQSRVLEQTL----FRAGLPYKIYGGL 370 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEY 469 + IK +A R ++ +DD + + ++ P + I E +++ Sbjct: 371 RFYERQEIKHALAYLRLAINPDDDNALLRVINVPARGIGSRTVENIQAAASQEGIPLWQA 430 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVID 527 A K ++ I L D + + + + ++ G + +D Sbjct: 431 ACHVAVKN-GKVATFVRLIESLRGCIGQVGLPDIVAEAVRSSGLYEYYQNQKGDHQDRLD 489 Query: 528 VLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHSANHNEVRIM 575 LDE + E +++ +L +++ L + +A+ + V++M Sbjct: 490 NLDELIRAAEEFHPEDSTFETLPADVVESPAFPVLAFLSNAALESGENQAAADESAVQLM 549 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 TVH AKGLE VFL F + Sbjct: 550 TVHAAKGLEFDAVFLTGMEEGRFPSE---------------------------------- 575 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + + EE RL+YV +TRA +L I +++ T V Sbjct: 576 LSLAEHGGLEEERRLMYVAITRARQRLYISMAQQRMLHGQTHFGTVSRFVE--------- 626 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 ++ + + PE P +R + +Q Sbjct: 627 ---EIPPDLLHLLTPVLKPRFPVPEGRPQQRRAEWVAPVAKQDY 667 >gi|221068754|ref|ZP_03544859.1| UvrD/REP helicase [Comamonas testosteroni KF-1] gi|220713777|gb|EED69145.1| UvrD/REP helicase [Comamonas testosteroni KF-1] Length = 827 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 104/597 (17%), Positives = 190/597 (31%), Gaps = 153/597 (25%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L YEE ++ V+DF +L++ + +LL+ +R+ + HIL+DE QDT+ + Sbjct: 191 ELYQLYEEQCQREGVVDFGELMLRSYELLRDD---VHLRHHYQRRFQHILVDEFQDTNKL 247 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q++ ++ L D + S ++ AVGD+ QSIY+F GA + R + Sbjct: 248 QYQWLKQLAGDDV--GGRYESAASVIAVGDDDQSIYAFRGARVGNMADFIREFDVK---- 301 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + I+L ++RS ++IL + + S N G + Sbjct: 302 ----NQIKLEQNYRSYSNILDCANALISHNSNRLGKNL---------------------- 335 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + D A + I ++ D Sbjct: 336 -----RTSQGPGEPVRIYEAPSDLAE--------AAWMVDEIKQLVKND---------GF 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 ++I VL R + +I + +I + IK +A R + + Sbjct: 374 TRQEIAVLYRSNAQSRVIESAL----FNSRIPYRVYGGLRFFERAEIKHALAYLRLLENP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 DD SF+ ++ P I + T R ++ + + +K Q + I Sbjct: 430 HDDTSFLRVVNFPARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDV 489 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539 L Q + + + + + + G + I+ L E + Sbjct: 490 LREQTQGRTLREIIETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFVTQEGFGRDA 549 Query: 540 ------EQNSYSSLQE---------------------------------------LISEL 554 EQ + L + L + L Sbjct: 550 VAMPLDEQQNAPQLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFL 609 Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 A + V++MTVH +KGLE VF+ +F H++ Sbjct: 610 VHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDAVFIGGVEEGLFPHEN----------- 658 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + + EE RL YV +TRA +L + Sbjct: 659 -----------------------AMMDRGGLEEERRLAYVAITRARKRLYLSHSQTR 692 >gi|296392306|ref|ZP_06881781.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAb1] Length = 728 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 104/591 (17%), Positives = 192/591 (32%), Gaps = 116/591 (19%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + L + YE A + V+DF +L++ DL + + Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + HIL+DE QDT+ +Q+ +R L + +L VGD+ QSIY + G Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A + + + +I L ++RSTA IL + + + + G Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + S + F+ + AR + Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 +I + + + +I +L R + ++ K I Sbjct: 338 SIESALRGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I R +++E I Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443 Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + S ++ I L H ++ ++ Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEK 503 Query: 522 GNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + L L + L + A+ + V++MT+H+ Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHS 563 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFLV +F HK Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 + EE RL YVG+TRA +L++ + + Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPP 640 >gi|300766625|ref|ZP_07076542.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495725|gb|EFK30876.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 759 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 105/752 (13%), Positives = 220/752 (29%), Gaps = 140/752 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L S + Sbjct: 34 GAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLLGESAQEVWVST 93 Query: 66 FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110 F L L + T + L +++ Q+ Sbjct: 94 FHALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRILTEQNIDSKKFDPRSILSAISNA 153 Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T +M+K + A ++ + Y+ + +DF+DLI+ T L K+ + Sbjct: 154 KNDLQTPEMYKESAASPFESVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPET-- 211 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L + + + L VGD QSIY Sbjct: 212 -LAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKY----------KNLCVVGDADQSIYG 260 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + + L ++RST IL+ + V + + Sbjct: 261 WRGANMENILDFEKDYPQ--------ADTVMLEQNYRSTKTILSAANAVINNNSTRRPKK 312 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW +++ + + +S Sbjct: 313 ---------------------LW------TENEPGDKISYYRGQSESDETH--------F 337 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D + D +L R + ++ I Sbjct: 338 VIAKIQESMQQDKM---------DYGDFAILYRTNAQSRVMEESL----VKANIPYTMVG 384 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I+D+++ ++ +D ++F ++ P + + K+ ++ Sbjct: 385 GNKFYDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSML 444 Query: 468 EYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 E ++EL + ++ S D IL + Sbjct: 445 EAASNVDMANGISARAKGALAKFAATMNELRAMREYLSVTDLTQEILDRTGYMKALKDAK 504 Query: 522 ------GNEVIDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRA-HSANHNE 571 I+ ++EFL+ T + + + + + L Sbjct: 505 ATKSLEAQARIENIEEFLSVTKQFDDSYQPEDEDSDKFVDFLADLALVSDVDNVEEEPQA 564 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 565 VTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL--------------- 609 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688 YVG+TRA +L + + + + + + + Sbjct: 610 -------------------AYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVEEIEPE 650 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +E + E P Sbjct: 651 LLKNENTLDGASSTGPKVPFGADRERRAFTPS 682 >gi|170728818|ref|YP_001762844.1| DNA-dependent helicase II [Shewanella woodyi ATCC 51908] gi|169814165|gb|ACA88749.1| DNA helicase II [Shewanella woodyi ATCC 51908] Length = 721 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 102/604 (16%), Positives = 196/604 (32%), Gaps = 120/604 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+E+ + ++DF ++++ ++L + + +IL+DE QDT+ I Sbjct: 172 QIYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---VLKHYQDRFKNILVDEFQDTNAI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + VGD+ QSIY + GA+ + + + K Sbjct: 229 QYAWIRVLAGD----------NANVMIVGDDDQSIYGWRGAQVENLHKFLEDFPKAG--- 275 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ + G LW Sbjct: 276 -----TIRLEQNYRSTGHILKASNELIANNPERLGKK---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + +Q + F+ + + AR I I + Sbjct: 310 -------TEDKDGEQIAIYCAFNEMDE-------ARFIVGRICDWHDMGGDL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +L R + ++ ++ + IKD M+ R I ++ Sbjct: 348 --SSCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMSYLRLINNK 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 +DD +F ++ +P + + R + T+++ + + + + Sbjct: 402 DDDAAFERVVNTPARGIGGRTLDILRATARQQELTLWQTCLRALEEKLLSGRAANAVRGF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-- 539 + I E+ + S H ++ + + + G + + LDE + Sbjct: 462 MDLIVEMQQDTEELSLHRTTDHVIRESGLKSMYEAEKGEKARSRVENLDELVTAARTFVM 521 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E L +S A + V++MT+H+AKGLE PVVF+ + Sbjct: 522 PEENEDMGELNAFLSHAALEAGE--GQADAFTDAVQLMTLHSAKGLEFPVVFMSGVEEGI 579 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + +E RL YVGMTR Sbjct: 580 FPSQMAMDEG----------------------------------DRLDEERRLCYVGMTR 605 Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 A ++L I + N + + ++K S ++ ST Sbjct: 606 AMEKLYITYAETRRIYGRENFARPSRFIKEIPTEHVEEIRLKTQVSTPSRAQPSFTRSTV 665 Query: 718 HPEN 721 E+ Sbjct: 666 VNES 669 >gi|16762183|ref|NP_457800.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143672|ref|NP_807014.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161539|ref|ZP_03347249.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425413|ref|ZP_03358163.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649574|ref|ZP_03379627.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865062|ref|ZP_03387181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25290775|pir||AG0918 DNA helicase II [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504486|emb|CAD07941.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi] gi|29139307|gb|AAO70874.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 720 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 188/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+V + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSVANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGW----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|312795642|ref|YP_004028564.1| DNA helicase II [Burkholderia rhizoxinica HKI 454] gi|312167417|emb|CBW74420.1| DNA helicase II (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454] Length = 791 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 124/846 (14%), Positives = 242/846 (28%), Gaps = 176/846 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ LI + W + + S +L + + + Sbjct: 28 GAGSGKTRVLITRIAWLISRGEASPAGILAVTFTNKAAREMLIRLDAMLPINTRGMWIGT 87 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + T + L + L K Q Sbjct: 88 FHGLCNRMLRAHYRDAGLPQAFQILDTADQLSAIKRLMKGLNIDDEKYPPKSLQYFINNA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ + ++ L A YE+ ++ V+DF +L++ ++LL++ +R Sbjct: 148 KEQGLRPEQVDASDNFNRKCVELYAAYEQQCQREGVVDFAELLLRCHELLQRNPT---LR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFR 254 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA +L +R R +I+L ++RS +IL + + + G + Sbjct: 255 GANVGNMLDFEREFNVR--------HLIKLEQNYRSHGNILDAANALIAHNSKRLGKNLR 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + ++ S A I Sbjct: 307 TD---------AGHGEPVRVY--------------------------EATTDSQEAGWIV 331 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +I T + +I VL R + ++ + I+ Sbjct: 332 EEIRALIDTG----------LSRDEIAVLYRSNAQSRVVEHTL----VNAGIAYRVYGGL 377 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + +K +A R I + DD +F ++ P + ++ R ++ + Sbjct: 378 RFFERQEVKHALAYLRLIDNPSDDTAFARVVNFPARGIGARSLEQLADAARLYNCSMAQA 437 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 I + I + + S + ++ Q + + R G E I+ Sbjct: 438 IPYVTGKAGQALGGFLALIERMRGETRAMSLPETVEAVIRLSGLEQFYANDREGQERIEN 497 Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549 L E +N L Sbjct: 498 LQELVNAASAFVSEEGYGLDTPARSIPLAPGASRAAALRGPDDDGEQAVLDAPRIDAPAQ 557 Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L L A + V++MTVH AKGLE VF+ +F H+ Sbjct: 558 NPDQMTPLAGFLSHASLEAGDNQAQAGEHAVQLMTVHAAKGLEFAAVFITGLEEGLFPHE 617 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ EE RL+YV +TRA ++ Sbjct: 618 NSVT----------------------------------EQDGLEEERRLMYVAITRAKER 643 Query: 662 LIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 L + + + + ++ E + + + Sbjct: 644 LYLSFAQSRMLHGQTRYNVRSRFFDELPAGVLKWLTPKLEPGSRWGQRAGFGDNAGWGRD 703 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773 W ++ + + T LE Sbjct: 704 WFGRGGRRDDAPYGNARFDDGAPAPAFADQQRAAQSGFRIGQPVFHAKFGEGTITALEGG 763 Query: 774 LSDNQT 779 +D + Sbjct: 764 GTDAKA 769 >gi|229586731|ref|YP_002845232.1| DNA helicase II [Rickettsia africae ESF-5] gi|228021781|gb|ACP53489.1| DNA helicase II [Rickettsia africae ESF-5] Length = 653 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 113/567 (19%), Positives = 192/567 (33%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + L +AK + Y++ + VLDF DL++ N+L K + I ++ Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N G + Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + W+ + AR IA I N+ Sbjct: 310 -------------LW---TDRENGEKIKIISCWSDKEE-----------ARYIASEIDNL 342 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + A +I +LVR T + + + + Sbjct: 343 VRE---------NRYNAGNIAILVRAVFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449 Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 G K + ++ I +P + IL + E I Sbjct: 450 IGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF + + Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 589 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 EE R+ YVG+TRA L I + Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616 >gi|257485680|ref|ZP_05639721.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011968|gb|EGH92024.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 727 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 120/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI N + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIENALQTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|238650278|ref|YP_002916130.1| DNA helicase II [Rickettsia peacockii str. Rustic] gi|238624376|gb|ACR47082.1| DNA helicase II [Rickettsia peacockii str. Rustic] Length = 653 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 111/567 (19%), Positives = 190/567 (33%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + L +AK + Y++ + VLDF DL++ N+L K + I ++ Sbjct: 159 LSVSDTNLPLQRIAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N G + Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + W+ + AR IA I + Sbjct: 310 -------------LW---TDRENGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + A +I +LVR T + + + + Sbjct: 343 VRE---------NRYNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449 Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 K + ++ I +P + IL + E I Sbjct: 450 IDEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF + + Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 589 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 EE R+ YVG+TRA L I + Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616 >gi|91205500|ref|YP_537855.1| DNA helicase II [Rickettsia bellii RML369-C] gi|122425652|sp|Q1RIP8|UVRD_RICBR RecName: Full=Probable DNA helicase II homolog gi|91069044|gb|ABE04766.1| DNA helicase II [Rickettsia bellii RML369-C] Length = 653 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 113/561 (20%), Positives = 192/561 (34%), Gaps = 121/561 (21%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L +AK + Y++ + V+DF DL++ N+L K I + +ILI Sbjct: 165 NLPLQRVAKLVYEEYQQNLLISNVVDFGDLLLYNNELFIKNPD---ILKHYQERYRYILI 221 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+++Q+ R L S + + VGD+ QSIY + GAE +LR ++ Sbjct: 222 DEYQDTNVVQYLWARMLA----------SLSKNICCVGDDDQSIYGWRGAEVGNILRFEK 271 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 +II+L ++RST IL V + +N G + Sbjct: 272 DF--------LNATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------------- 309 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 LW D + + + + + D AR IA I+ ++ Sbjct: 310 -------LW------TDKESGEKIKIISCWNDKEE--------ARYIAAEIARLVREGR- 347 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 A +I +LVR T + + + + I+D++ Sbjct: 348 --------YSAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERMEIRDVL 395 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK- 480 A R L+Q D+L+ ++ P + KI + + + I++ G K Sbjct: 396 AYIRIALNQNDNLALERIINVPKRAIGAVTLNKIKLYAIEKNISNFAAIKEMLEDGEIKT 455 Query: 481 -----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + ++ I F +P + IL + E I+ ++E Sbjct: 456 KSYETLKDLVTKISNWHERFSFDAPINVTKAILDDSGYLEMLQEEKTEEALGRIENINEM 515 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFL 590 L ++ +E ++ V IMT+H AKGLE VVFL Sbjct: 516 LRAIAEF--------NDIHDFIEHSSLVMENESLETSYGGSVTIMTLHGAKGLEFDVVFL 567 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 VF + L ++ R+ Sbjct: 568 PGWEEGVFPSQRSLDEEGEKGLEEE--------------------------------RRI 595 Query: 651 LYVGMTRASDQLIICKHSNTS 671 YVG+TRA +L I + Sbjct: 596 AYVGITRAKKELYITHAESRK 616 >gi|328754850|gb|EGF68466.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1] Length = 1072 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 147/1002 (14%), Positives = 296/1002 (29%), Gaps = 148/1002 (14%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSSF 72 + L V ++K + G I + L A + + Sbjct: 136 ARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQM 195 Query: 73 FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132 L T+ + D+ + L + + + Sbjct: 196 LL--------AAPTKRGGDRYADIDKWLSRVDEREELL---------------------D 226 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L A Y+ KK+ +++F D ++ L+ + ++ +L+DE QDTS Q Sbjct: 227 LVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQ 283 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +V+ +L F + H + AVGD Q+IY + GA +L R + G Sbjct: 284 ADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EG 337 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++ L + R I+ + ++ +R S + G + Sbjct: 338 TPAQVLSLATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPAD 383 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 Q E ++ + A + TI + Sbjct: 384 DRAEVAVGQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------AR 435 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +LVR+ D + + V + L I ++A R ++ ++ Sbjct: 436 WSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQ 491 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANC 476 DD + +L +P S DD+ + + + + + + Sbjct: 492 DDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPG 551 Query: 477 GISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530 G + Q +K + I + SP D I + + D LD Sbjct: 552 GHERLQCALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLD 611 Query: 531 EFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESP 586 N ++ ++ +++ L + RA + + + V + TVH AKGLE P Sbjct: 612 ALWNAIREARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWP 671 Query: 587 VVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 +V + D VF ++PS I P S S + + + + Sbjct: 672 LVIIPDMAQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKED 731 Query: 642 STQEEYNRLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 S E RL YV +TRA ++L++ H + + D++ D + Sbjct: 732 SQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERP 790 Query: 701 TNSINKD-------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 + I + + + + +K + Sbjct: 791 DDDIQAGTPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQD 850 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIF 794 ++ P + ++ L+ + + ++ G H+ + I Sbjct: 851 EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 910 Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853 + T+ A + L S+ + E A + ++V Sbjct: 911 LFDAEEIAELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEK 964 Query: 854 KINCPKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 ++ GR+D + + + ++KT + QLSIY Sbjct: 965 SFVMTIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLA 1016 Query: 911 LKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + + +V + A I T Sbjct: 1017 WAQARGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|320321765|gb|EFW77863.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. B076] gi|320331515|gb|EFW87455.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. race 4] Length = 727 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 120/661 (18%), Positives = 216/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L A H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKAMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|313667543|ref|YP_004047827.1| DNA helicase II [Neisseria lactamica ST-640] gi|313005005|emb|CBN86435.1| DNA helicase II [Neisseria lactamica 020-06] Length = 735 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 98/582 (16%), Positives = 188/582 (32%), Gaps = 118/582 (20%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ + + A Y++ + V+DF +L++ + ++L Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICHREGVVDFAELMLRSYEML 203 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + ++ +R NHIL+DE QDT+ +Q+ ++ + +FAVG Sbjct: 204 QSNEI---LRRHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY F GA + A ++L ++RS +IL + V Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + D++ + ++++ D Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A+ I + +I VL R + +I Sbjct: 333 -----AQFIVDETKALEREGRDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A R ++ +DD + + ++ P + + T Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433 Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 E A +K ++ I + + IL + + ++ Sbjct: 434 QEQGVSLWQAACNAGAKAAKVAAFVRLIEAFRNQVGQMPLPEIIVGILKDSGLTEYYKTQ 493 Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566 G + +D LDE +N + E +++ L + +++ L + Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPDNISDDPAFPILAFLSNAALESGENQAG 553 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A V++MTVH AKGLE VFL F + Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 ++ EE RL+YV +TRA +L I Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621 >gi|296158133|ref|ZP_06840965.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] gi|295891469|gb|EFG71255.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] Length = 783 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 122/809 (15%), Positives = 230/809 (28%), Gaps = 171/809 (21%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ LI + W + + S ++ + L Sbjct: 28 GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + T + L + L K Q Sbjct: 88 FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ K +T L Y++ ++ V+DF +L++ +LL +R Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ +Q+ ++ L ++FAVGD+ QSIY+F Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKMLAGQ----------TNSIFAVGDDDQSIYAFR 254 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + R +I+L ++RS IL +++ + G + Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + ++ S A I Sbjct: 307 TD---------AGHGEPVRVY--------------------------ESATDSQEAGWIV 331 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +I T T +I +L R + I + I+ Sbjct: 332 EEIKALISTGT----------SRSEIAILYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + +K +A R I + DD +F ++ P I ++ R ++ Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAA 437 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 I A S I ++ Q S + ++ A + + + R G + ++ Sbjct: 438 IPYVAGKAGSSLAGFANLIGKMRAETQQMSLPETVEYVVRASGLSEFYQNEREGQDRLEN 497 Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543 L E +N Sbjct: 498 LQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTVVLDAPGIADPAQ 557 Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++ L L A V++MTVH AKGLE VF+ +F H+ Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ EE RL+YV +TRA ++ Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 L + + ++ + K W + + + Sbjct: 644 LYLSFAQSRMLHGQTRYNIRS---RFFDELPQETLKWLTPKIEPGARWGGRSDNAGYGRD 700 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKND 750 T +P + Sbjct: 701 WFARPGYTGAASSTPAPLPAFANEQRAAE 729 >gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649] gi|84381450|gb|EAP97333.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649] Length = 838 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 101/614 (16%), Positives = 192/614 (31%), Gaps = 113/614 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L Y+ ++ LDF+D+I+ T +L+ + + HI++DE QD Sbjct: 254 RLLAEAYTAYQRRLRQANALDFDDIIMLTVHMLQ---AFPDVAEHYRRRFRHIMVDEYQD 310 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+++IR L P L VGD QSIY+F GA + ++ + + Sbjct: 311 TNHAQYQLIRELVGSDEKRGEHSVEPSELVVVGDADQSIYAFRGATIRNIVEFEVDYPE- 369 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST ILT + V + E+ + + Sbjct: 370 -------ARTILLERNYRSTQTILTAANAVIARNESRRKKN------------------- 403 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + A +A TI + G Sbjct: 404 --LW-------TDSGSGAPIIGYVGDNEHDE-------ASFVARTIDKL---------GD 438 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + ++ D+ V R + + + + + +KD +A R Sbjct: 439 EHGVKPGDVAVFYRTNAQSRALEEVF----VRVGLPYKVVGGTRFYERREVKDALAYLRV 494 Query: 428 ILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQK------FANCGISK 480 + + D ++ +L P + + E + E + + A I+ Sbjct: 495 LSNPADTVNLRRILNVPKRGIGDRAEAVVAALAERERISFVEALGRPEDAPGIATRSIAC 554 Query: 481 FQHVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + + +L + + D I+ + + + ++ L E + Sbjct: 555 IKGFTALLEDLGTVRDDDNAGVADLLEAIVDKSGYLAELRASHDPQDETRVENLAELVAV 614 Query: 536 TLRN-----EQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLESPV 587 E +SL++ + ++ + + V +MT+HTAKGLE PV Sbjct: 615 AREFDEARAETGEVNSLEDFLEQVSLVADADEIPDSAEAEEQGVVTLMTLHTAKGLEFPV 674 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VFL F H L EE Sbjct: 675 VFLTGMEDGTFPH----------------------------------LRSLADPKELEEE 700 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YVG+TRA ++L + + + S + + ++ + Sbjct: 701 RRLAYVGITRARERLHLSRAAVRSAWGAPQYNPPSRFLDEIPTELLSWERELSGLAAIGQ 760 Query: 708 EWIAYEWSTHHPEN 721 ++ Sbjct: 761 RGQRPAVASLAARP 774 >gi|186476348|ref|YP_001857818.1| UvrD/REP helicase [Burkholderia phymatum STM815] gi|184192807|gb|ACC70772.1| UvrD/REP helicase [Burkholderia phymatum STM815] Length = 790 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 113/705 (16%), Positives = 209/705 (29%), Gaps = 157/705 (22%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K Q +++ K ++ L Y++ ++ V+DF +L++ +LL Sbjct: 138 KNLQYFINNAKEQGLRPKDVDASDNFNRKFIELYEAYDQQCQREGVVDFPELLLRCYELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 +R HIL+DE QDT+ +Q+ ++ L + +FAVG Sbjct: 198 SYNP---PLRAHYQARFRHILVDEFQDTNKLQYAWLKMLAGE----------HNAIFAVG 244 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + + + R ++I+L ++RS IL + + + Sbjct: 245 DDDQSIYAFRGANVGNMRDFESEFKVR--------NLIKLEQNYRSHGHILDAANHLIAN 296 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + + G V+++E + Sbjct: 297 NSRRLGKNLRTD---------AGHGEPVRVYEAATDSQE--------------------- 326 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I +I T + +I VL R + I + Sbjct: 327 -----AGWIVEEIRALINTG----------LSRSEIAVLYRSNAQSRTIEHTL----VNV 367 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQ 459 I + +K +A R I + DD +F ++ P I ++ Sbjct: 368 GIPYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAA 427 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 R ++ I + I ++ S + ++ A + + + Sbjct: 428 RLYNCSMAAAIAYVTGKAGTSLGTFANLIAKMRAETAQMSLPETVEYVVRASGLSEFYQN 487 Query: 520 -RFGNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549 R G E ++ L E +N L Sbjct: 488 EREGQERLENLQELVNAATAFVSEEGYGLDTPARSIPLRPGATSAPELVVSTDDPGIDVL 547 Query: 550 -----------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 L L A V++MTVH AKGLE VF+ Sbjct: 548 DAANPADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFIT 607 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 +F H++ ++ EE RL+ Sbjct: 608 GLEEGLFPHENS----------------------------------AMESDGLEEERRLM 633 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV +TRA ++L + + + + +T Y++ F + LT + Sbjct: 634 YVAITRAKERLYLS----FAQSRMLHGQTRYNIRSRFFDELPQETLKWLTPKVEAGARWG 689 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756 R + ++ +P+ NE Sbjct: 690 GRSDNAGWGRDWFSRPDRQQKGYQGSASYATTSAPLPAFANEQRA 734 >gi|212637392|ref|YP_002313917.1| DNA-dependent helicase II [Shewanella piezotolerans WP3] gi|212558876|gb|ACJ31330.1| DNA helicase II [Shewanella piezotolerans WP3] Length = 721 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 99/586 (16%), Positives = 193/586 (32%), Gaps = 116/586 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+++ + ++DF ++++ ++L + I HIL+DE QDT+ IQ Sbjct: 173 IYQVYQDSCDRAGLVDFAEILLRAHELWLNKPH---ILDHYQDRFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L S + VGD+ QSIY + GA+ + + + Sbjct: 230 YAWIRVLAG----------SSANVMIVGDDDQSIYGWRGAQVENLHKFLGDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RS+A+IL +++ + + G LW Sbjct: 274 --AQTIRLEQNYRSSANILNASNELIANNPDRMGKK---------------------LW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ + + AR I I++ + Sbjct: 310 ------TDDKDGEPIGLYCAFNEMDE-------ARFIVGRINDWQDEGG----------K 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ I+ + IKD M R I ++ Sbjct: 347 LADCAILYRSNAQSRVLEEAL----LHKGIAYRIYGGLRFFERQEIKDAMGYLRLISNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + T R + T+++ + + + + Sbjct: 403 DDAAFERVVNTPARGIGGRTLEIMRTTARQQELTLWDACVRLLEEKVLSGRAANAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541 I L + S H ++ A + + + G + + L+E + Sbjct: 463 DLIVALRVDTEEQSLHRRTDHVIQASGLKLMYETEKGEKARARVENLEELVTAARSFVVP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + + V++MT+H+AKGLE P+VF+ +F Sbjct: 523 EELEDMGELDAFLSHAALEAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + +E RL YVGMTRA Sbjct: 583 QMAIDEG----------------------------------DRLDEERRLCYVGMTRAMQ 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 QL I + + + V + + +++ S Sbjct: 609 QLYITYAESRRIYGRESFARPSRFVKEIPEQFVQEIRMRTQVSAPA 654 >gi|192360802|ref|YP_001982657.1| UvrD/REP helicase domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686967|gb|ACE84645.1| UvrD/REP helicase domain protein [Cellvibrio japonicus Ueda107] Length = 1163 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 141/982 (14%), Positives = 302/982 (30%), Gaps = 116/982 (11%) Query: 15 LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER---FSLLSS 71 + + + + + +++ + + L E + L Sbjct: 238 RLLRRALSYHASDLCALADRAATNLQDEGERKNRIHELLGITHLPPTEPEALPHWLALVD 297 Query: 72 FFLTQKFTPQKNIIT----------QEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---- 117 LT T + + E+ ++ L++ + + Sbjct: 298 LLLTNGGTYRARLTKSEGFPTGKAGAELKEQFAGFIAVLREQNPDLETLLADTRLLPPVA 357 Query: 118 ---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 + + + L L A K+ D+ + L D + K+D Sbjct: 358 YAPEQWALLESLTQLLPQLAAELMLVFKQLAATDYSAISQAALLALGDEDEPTDLALKLD 417 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 I HIL+DE QDT+ Q E++R LT+ + G RTLF VGD QS Y F A Sbjct: 418 YRIRHILVDEFQDTASPQLELLRKLTQGWQTGDG-----RTLFIVGDGMQSCYGFRNANV 472 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTT 293 L ++ ++L ++FRS A ++ V++VF+ ++ + Sbjct: 473 GLFLDARQQ-----GIGNVALEAVDLCVNFRSQAGVVDWVNQVFAKAFPAQDDIARGAVH 527 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 + + + Q T+ + + A ++ + Sbjct: 528 YSPSTAFKPLLANPAVQLHIAAYTSGDDEDDLQTGNTAG----SIQQARQREAAQVVALV 583 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + I +LVR R I ++ + L Sbjct: 584 RQAKAENPQ-----------GSIAILVRTRTHLREILPAL----TTAGLNYQATEIDRLA 628 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR------------- 460 +AI DL L R +L D +S++ +L++P + +D+ + R Sbjct: 629 TRMAILDLRTLTRALLDPSDRISWLALLRAPWCGLTLNDMHALANTRLPESHTDNANDWP 688 Query: 461 --HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++ I + G ++ + + + + + + A G + Sbjct: 689 LLWPQILHHQQITSISADGHTRLEKLRQVLANAWENRLRKPLRQWIEGVWLALGGPACLV 748 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 D + +L ++E + + + + + +++MT+H Sbjct: 749 DANEC---DNVQSYLTLLDKHENAGR--ILDWQAFNQALQQLFAAPKADADPLLQVMTIH 803 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI---WIPQSKSRNNIVSDL 635 +KGLE V + + + + + P K ++ + S + Sbjct: 804 KSKGLEFDTVIIPGLERANRGDEKSLLLWQERINRQGERQLLLGSFAPIGKDKDPLYSFM 863 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 K Q E RLLYVG TRA +L + + + + + ++ Sbjct: 864 RSEADKQQQFEATRLLYVGCTRAIKRLYLLGCAKQTEDGLQLSGKRSLLACIWPQVQDQC 923 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 I+ H +N ++ Q P SP+ + + Sbjct: 924 HLIE---------------QEHQQQNLRTHPLPLLRLPSQWQAPPMDYTSPLASYRGRDF 968 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 +P I + + G++IH+ LQ I +YC L Sbjct: 969 RSDP--IANPRNLPELENRRNRLARHTGILIHRALQDWVERRLLPGGEDIHAYCACLYPL 1026 Query: 816 WP-------------AKEYKNLLLSITRLLENPMMTTAMSCDSY---SEVSVSGKINCPK 859 W + + + +++ L +P ++ D E+++ Sbjct: 1027 WNSSLHQRGWARDEIDQSLEKITRALSTTLNDPHGQWLLNPDHLDSQCELALVEHDTQGV 1086 Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDS 914 ++ ID+ I +I +YK+ E + + QL+ Y +++ + Sbjct: 1087 REH----IIDRTFIDGGERWILDYKSSEPEGGESVAAFVARERELYQGQLARYRELMANL 1142 Query: 915 YPNKSLVCLLIYVSEPKVFIIP 936 + L + ++ + Sbjct: 1143 -ESIPTRTALYFACLGRLEELS 1163 >gi|313771951|gb|EFS37917.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1] Length = 1072 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 149/995 (14%), Positives = 298/995 (29%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + D LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARKSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + I Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|297616808|ref|YP_003701967.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680] gi|297144645|gb|ADI01402.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680] Length = 709 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 100/550 (18%), Positives = 182/550 (33%), Gaps = 118/550 (21%) Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + Y+ K LDFEDLI+ T L ++ + + K +I+IDE Sbjct: 162 LREVYQKAFRLYQARLKAMNGLDFEDLILLTIRLFRENED---VLGKYRDRFKYIMIDEY 218 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+ + +L ++ R LF VGD QSIYS+ GAEP+ + R R Sbjct: 219 QDTNYAQYVLSHTLAQE----------HRNLFIVGDPDQSIYSWRGAEPENIKRFLRDYP 268 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + II+L ++RST IL + V + + + + R Sbjct: 269 E--------ARIIKLEKNYRSTKVILDAANAVIRHNCEREEKVLKTDNPVGEKLRR---- 316 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 D + A+ +A TI+ ++ Sbjct: 317 ------------------------FRAVDGQEE-------AQFVAETIAELVRQG----- 340 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + +D+ + R + + + + + ++D++A Sbjct: 341 -----YRYRDMAIFYRTHAQSRYLEDVLK----RRLVPYYIVGARSFYQRKEVRDVLAYL 391 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGI 478 + ++ D LSF ++ P + + +I E I + Sbjct: 392 KLAVNPFDTLSFRRVINLPRRGVGDVTLKRIEEFAAASALPVLEALANPADIPGISRRVA 451 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNF 535 + I + + + +L + + R E I+ L E + Sbjct: 452 EALEEFYGLIKFVQVLGENEPVMAVLEQLLESSGYVEDICRRDPLGAEERIENLRELKSV 511 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L ++ +L E ++E+ T + V +MT H+AKGLE PVVF+ Sbjct: 512 ALEFDRTRGGNLGEFLAEVSLVQDTDTTDV---SDAVAMMTFHSAKGLEFPVVFMTGMEE 568 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + + RL YVG+ Sbjct: 569 GIFPSAKAETEAEIEEE-----------------------------------RRLCYVGI 593 Query: 656 TRASDQLIIC 665 TRA ++L + Sbjct: 594 TRAKERLFLS 603 >gi|322646964|gb|EFY43466.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|323227583|gb|EGA11739.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 720 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|329964807|ref|ZP_08301830.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] gi|328524658|gb|EGF51721.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] Length = 767 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 96/619 (15%), Positives = 185/619 (29%), Gaps = 121/619 (19%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL+ T L + + + +IL+D Sbjct: 169 AAKMPAVRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPE---VLAHYQELFRYILVD 225 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ L ++ + + VGD+ QSIYSF GA+ +L ++ Sbjct: 226 EYQDTNFAQHSIVLQLAKN----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 275 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + + S Sbjct: 276 YP--------GTKVFKLEQNYRSTQTIVRAANSLIEKNQRQIHKEVFS------------ 315 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + + I+ + + Sbjct: 316 ---------------EKEKGESIGVYQAYSDVEEGDI--------VVNKIAELRRREH-- 350 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D VL R + + R + IKD++A Sbjct: 351 -------YAYADFAVLYRTNAQSRVFEEAMR----KRGMPYRIYGGLSFYQRKEIKDVIA 399 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI +++ + + Sbjct: 400 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIIAAATENNVSLWTVLCEPLTYGLNLNK 459 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + K Q I I S ++ T I+ E + ++E Sbjct: 460 GTVGKLQGFRDLISGFIAGVTEKSAYETGTEIIRQSGIINDVCQDNSPENLSRKENIEEL 519 Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N E N L + +SE+ + ++ +MTVH+AKGLE Sbjct: 520 VNGMSDFCARRQEEGNPNILLGDFLSEVSLLTDQDSD-KDGDDEKITLMTVHSAKGLEFK 578 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F EE Sbjct: 579 NVFVVGMEENLFPSGMAGNS----------------------------------ARALEE 604 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA + + K + + D + + + + Sbjct: 605 ERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLKDIDARFLHLPQDAVVSRRID 664 Query: 707 DEWIAYEWSTHHPENTPLE 725 E A+ T Sbjct: 665 AEAGAFRPRQQIISPTVPR 683 >gi|146312904|ref|YP_001177978.1| exonuclease V subunit beta [Enterobacter sp. 638] gi|145319780|gb|ABP61927.1| exodeoxyribonuclease V, beta subunit [Enterobacter sp. 638] Length = 1181 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 118/876 (13%), Positives = 270/876 (30%), Gaps = 133/876 (15%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + + + + L + K + L F+D++ + L + Sbjct: 309 LFVAIETLLSQPLTLNDLMITRAMAEIREAVAREKNRRGELGFDDMLSRLDAALS-SENG 367 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 368 EALAAAIRARFPVAMIDEFQDTDPQQYRIFRRIWRK--------QPDTALLLIGDPKQAI 419 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ ++ + + T L ++RS ++ V+ +F + A Sbjct: 420 YAFRGADIFTYMKARSEVEAHYT----------LDTNWRSAPGMVASVNTLFERMDAAFM 469 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 E + ++ + ++ + P W + + +A Sbjct: 470 FKEIPFSPVKSAPQNHA----------LRFEYQGKTQPAMNFWLMNGEGCGVSDYQNAMA 519 Query: 347 RRIAYTISNMIGTDTIFSNGKKRV-----IQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + + + A DI VLVR R++ LI L Sbjct: 520 HQCAAQIRDWLSAGVRGEALLWKGEKAKSVSASDITVLVRSRQEASLIRDALTSLDIP-- 577 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + + L ++++ L + +L+ E + + L S + + DI + Sbjct: 578 -SVYLSNRDSVFETLEAQEMLWLLQAVLTPERESTLRSALASSMLGLNARDIDALNNDEA 636 Query: 462 ETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 E ++ + + ++ + V+ + EL+ +L G ++ Sbjct: 637 E----WDAVVEEFVHYRERWLKRGVMAMLRELMSQRH------VAENMLATSGGERRLTD 686 Query: 520 RFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576 + E L L +E L + I++ + + ++ + V+I+T Sbjct: 687 IL------HISELLQEAGSQLESEHALVRWLSQHIADPNSNAASQQMRLESDKHLVKIVT 740 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE P+V L + + + + I Sbjct: 741 IHKSKGLEYPLVCLPFIANYRAQDQAFYHDRDSFE-------------AILDLSRADASI 787 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------- 683 + + E RLLYV +TR+ + + + + Sbjct: 788 ELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGEKTGESDFHQSALGRLIQQGEP 847 Query: 684 -----MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 + + ++++ I+ W E S + R + Sbjct: 848 KDAAGLKQCLEALCDENIALQISGPIDSTRWKMPEISAPDLSARQITRGLVDDWRVTSYS 907 Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798 ++ ++ ++ S + + + + + G +H L + + + Sbjct: 908 GLQQHGQNFAQELMPKLDVDASGVGEVIEQPELTPHQFPRGASPGTFLHSLFEEL-DFTQ 966 Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVS 852 +++ K + A L +T +L+ P+ ++ + + E+ Sbjct: 967 PVSPEWVSEMLQKGG--YDAHWQPVLTEWVTSILQAPLTESGISLSHLAAKEKQVEMEFY 1024 Query: 853 GKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTH 886 I P ++ G ID + ++ +YK++ Sbjct: 1025 IPIAGPLTASALDGLIREYDPLSKACPALNFRQVSGMLKGFIDLVFRHDGRYYLLDYKSN 1084 Query: 887 HHVPQEIEHIPY---------THIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGDNSEAYTQEAMAAAMQSHRYDLQYQLYTLALHR 1120 >gi|82701697|ref|YP_411263.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196] gi|82409762|gb|ABB73871.1| ATP-dependent DNA helicase UvrD [Nitrosospira multiformis ATCC 25196] Length = 743 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 107/717 (14%), Positives = 222/717 (30%), Gaps = 146/717 (20%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ Q + + F +L S + K I+ + + + + ++ Sbjct: 96 LRAHHQDAGLPQTFQILDSA---DQLAVIKRIL-KNLGADDEKFPPRQVQWF--INNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 ++ A YE K V+DF +L++ + +LL + ++ +R Sbjct: 150 EGLRASQVEAYDDYTRKMVEFYASYEHQCNKEGVVDFAELLLRSYELLMRNEI---VREH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 HIL+DE QDTS +Q++ +R L +FAVGD+ QSIY+F GA Sbjct: 207 YRSRFLHILVDEFQDTSRLQYKWLRLLAGPKTA----------VFAVGDDDQSIYAFRGA 256 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + ++ + II+L ++RS +IL + + G + Sbjct: 257 NTGNMREFEQDFR--------IPRIIKLEQNYRSHGNILDAANTLIRNNNGRLGKN---- 304 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + D A I Sbjct: 305 -----------------LW------TSEGRGEPIRVYNAPTDFDE--------AAFIVDE 333 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ +Q I +L R + ++ + + Sbjct: 334 VKSLRAEG----------VQLSQIALLYRSNAQSRVLEHAL----FNASLPYRVYGGMRF 379 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ 471 + IK +A R I + EDD + + ++ P + ++ + R + +++E + Sbjct: 380 FERQEIKHALAYLRMIANPEDDNALLRIVNFPARGIGLRSLEQLQDEVRQQGGSLWEAML 439 Query: 472 KFANCGISK------------------------FQHVIKYIHELIHIAQFCSPHDFFTLI 507 K + + I + + + + + Sbjct: 440 KKCRGREPATSGLLNKSSAGVGENKEPDRPRRGIEGFVALIESMRQVCETLPLPEIVEHM 499 Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH 565 L + + + R G + ++ L+E + + L ++ Sbjct: 500 LEHSGLIRHYQAEREGADRLENLNELVTAATAFVHEAEDDGLAVFLNHASLEAGE--HQA 557 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + +++MTVH+AKGLE VFL +F H + + Sbjct: 558 GGGEDALQLMTVHSAKGLEFHSVFLSGLEEGLFPHDNSRN-------------------- 597 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + EE RL+YV +TRA +L + + ++ + Sbjct: 598 --------------EAGGLEEERRLMYVAVTRAKRRLYLSFAQSRMLHGQTRYNIPTRFI 643 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 E + + L + + + P +R + + + E Sbjct: 644 -------EEIPQGVLKWLQPVQKTAPWRPAPLSPTQEVAQRPQIREMGVREATASPW 693 >gi|66048289|ref|YP_238130.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae B728a] gi|63258996|gb|AAY40092.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a] Length = 727 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|28872621|ref|NP_795240.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000] gi|28855877|gb|AAO58935.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000] Length = 727 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 193/592 (32%), Gaps = 116/592 (19%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + S LT K + YE A ++ V+DF +L++ DL + + Sbjct: 154 EGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRDNPG---LLA 210 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + H+L+DE QDT+ +Q+ +R L + +L VGD+ QSIY + G Sbjct: 211 HYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDDDQSIYGWRG 260 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + + +I L ++RSTA IL + + G Sbjct: 261 AKIENIHQYSDDFP--------DTEVIRLEQNYRSTASILKAANGLIINNSGRLGK---- 308 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + + + F+ + AR + Sbjct: 309 -----------------ELW-------TDVGDGELINLYAAFNEHDE-------ARYVVE 337 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 TI + + T I DI +L R + ++ +I Sbjct: 338 TIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERIPYRIYGGQR 383 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I RH +++E + Sbjct: 384 FFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARHADVSMWEAM 443 Query: 471 Q------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + I+ I L H ++ +Q Sbjct: 444 RLLVANKGLTGRAAGALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLITYHEQEKGEK 503 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + L L + L + + +++MT+H+ Sbjct: 504 GQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHEDSIQLMTLHS 563 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P VFLV +F HK + Sbjct: 564 AKGLEFPHVFLVGMEEGLFPHKMSLEEPG------------------------------- 592 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA QL++ V + Sbjct: 593 ---RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPA 641 >gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1] gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1] gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa GB514] Length = 728 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 104/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + +S + + + Y+E + ++DF +L++ ++LL+ + Sbjct: 154 RRPEHIQPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPA---LLTH 210 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 ILIDE QDT+ IQ+ +R L + +FAVGD+ Q+IY + GA Sbjct: 211 YRSRFREILIDEFQDTNAIQYAFVRVLA----------NDTGHIFAVGDDDQAIYGWRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V + I L ++RS+A+IL + + + + G Sbjct: 261 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 308 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + ++ + + AR I Sbjct: 309 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + +I VL R + + + I Sbjct: 338 ARQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSE----HIPYRVYGGMRF 383 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IKD +A R + ++ DD +F ++ +P+ E + ++ R + +++ Sbjct: 384 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 443 Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 + + + +L + +L + RQ + Sbjct: 444 ACTQSTTLTARARNALASFLNLLQQLALETNQMDLAERIDHMLQRSELRQHWKKEARGSL 503 Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575 + LDE ++ R + EL + L A V++M Sbjct: 504 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQVQAGEEGVQLM 563 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P+VFLV + +F Sbjct: 564 TLHSAKGLEFPLVFLVGLENGLFPS----------------------------------A 589 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + EE RL YVG+TRA +LI+ K N + + + Sbjct: 590 RSLDEHGRLEEERRLAYVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQDLLHE 649 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + + S + + P+ Sbjct: 650 VRPTIQVSHQPPLGATQRPAHDERDAAPI 678 >gi|327329920|gb|EGE71674.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL097PA1] Length = 1072 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 136/919 (14%), Positives = 278/919 (30%), Gaps = 119/919 (12%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTL-----AKYLNAHYEEAKKKNCVLDFEDLIIN 155 + + + + + + L A Y+ KK+ +++F D ++ Sbjct: 190 ARWRQMLLAAPTKRRGDRYADIDKWLSRVDEREELLDLVAAYQNLKKERGLVEFGDRMVQ 249 Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215 L+ + ++ +L+DE QDTS Q +V+ +L F + H Sbjct: 250 ALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL---FSGPDSAHGMGHP 303 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 + AVGD Q+IY + GA +L R + G ++ L + R I+ + Sbjct: 304 VMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLSLATNRRCADQIINAAN 360 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 ++ +R S + G + Q E + Sbjct: 361 --------------VASEELRQTLSSAVESGDHDPADDRAEVAVGQPLIAPEGNRRGEVT 406 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 + + + A + TI + D +LVR+ D + Sbjct: 407 VAAYPDWAKECQTCADILVEAKERGTI--------ARWSDAAILVRRNSDVADLYDSLTA 458 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 + V + L I ++A R ++ ++DD + +L +P S DD+ Sbjct: 459 ----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAM 514 Query: 456 ICTQ----------------RHETETVYEYIQKFANCGISKFQHVIKYIHELI---HIAQ 496 + + + + + + G + Q +K + I + Sbjct: 515 VYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAEIVEVDAHR 574 Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSY-SSLQELIS 552 SP D I + + D LD N ++ ++ +++ Sbjct: 575 ADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIREARRSDPTMTIAGIVT 634 Query: 553 ELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-- 607 L + RA + + + V + TVH AKGLE P+V + D VF Sbjct: 635 WLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMAQGVFPSTSTPDNFTS 694 Query: 608 ---IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 ++PS I P S S + + + + S E RL YV +TRA ++L++ Sbjct: 695 EAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA-RLAYVALTRAKERLVV 753 Query: 665 CKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD---------------- 707 H + + D++ D + + I Sbjct: 754 SWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTPWPVFAKDVGHGLID 813 Query: 708 ---EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + + + + +K + ++ P + ++ L+ + Sbjct: 814 NTSRSVDDPGQADRVKAWRTDADALLKDARRHIDLQDEVALPPRLTTSQIVRLHANPQAF 873 Query: 765 KGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKRKNFITSYCTKNAKLWP 817 + ++ G H+ + I + T+ A Sbjct: 874 RDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEIAELDEESITQEAVAVE 933 Query: 818 AKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876 + L S+ + E A + ++V ++ GR+D + Sbjct: 934 PSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIGQTVVRGRLDAVVADPD 987 Query: 877 NI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPK 931 + + ++KT + QLSIY + + + +V + Sbjct: 988 HPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGIDPSRVRAVFYHVGANE 1039 Query: 932 VFIIPQNKLNKAFAEISTK 950 A I T Sbjct: 1040 TISAEPLLDADQVAAILTA 1058 >gi|221234533|ref|YP_002516969.1| DNA helicase II [Caulobacter crescentus NA1000] gi|220963705|gb|ACL95061.1| DNA helicase II [Caulobacter crescentus NA1000] Length = 811 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 102/604 (16%), Positives = 182/604 (30%), Gaps = 120/604 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L Y+E + DF DL+++ L + + Q ++++DE QDT++ Q Sbjct: 215 LYRQYQERLRILNACDFGDLLLHNISLFTGHPD---VLDEFQQRFKYVMVDEYQDTNVAQ 271 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R L + + + VGD+ QSIY + GAE +LR +R Sbjct: 272 YLWLRLLAQ----------GRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------- 314 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++ L ++RST IL + + + G + LW Sbjct: 315 -GAKVVRLECNYRSTEHILAAASGLITANKGRLGKT---------------------LW- 351 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 ++ + +D + R IA I + Sbjct: 352 ------TPSKGGEKVKVSGVWDGEAES-------RLIADEIERAKKAGR----------K 388 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + +LVR L+ I + I+D A R I S + Sbjct: 389 YSQMAILVRASFQMRAFEERFVLLQ----IPYKVVGGPRFFERAEIRDAHAYLRLIQSPD 444 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DDL+F ++ +P + + K+ R + E + + + + I Sbjct: 445 DDLAFERIVNTPKRGIGDTSVQKLLQIARLGGISTVEAARQIITSDELPARTRTALSNFI 504 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542 + + + +L G ++ L E + + Sbjct: 505 RDLDRWRSLVGTAHHQRLLETVLEESGYTDALRLDKGPTSQTRLENLKELVQSMGAFDT- 563 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L + LE + A + V IMT+H+AKGLE P+VFL VF + Sbjct: 564 -------LEAYLEHVSLVMDLDREATGDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQR 616 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + + EE RL YVG+TRA ++ Sbjct: 617 S--------------------------------MDDKGEKGLEEERRLAYVGITRAREEA 644 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 I +N + + V + P + Sbjct: 645 RISFVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTS 704 Query: 723 PLER 726 + Sbjct: 705 AFQA 708 >gi|15600636|ref|NP_254130.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAO1] gi|107104547|ref|ZP_01368465.1| hypothetical protein PaerPA_01005625 [Pseudomonas aeruginosa PACS2] gi|218894546|ref|YP_002443416.1| DNA-dependent helicase II [Pseudomonas aeruginosa LESB58] gi|313111618|ref|ZP_07797417.1| DNA helicase II [Pseudomonas aeruginosa 39016] gi|9951773|gb|AAG08828.1|AE004957_3 DNA helicase II [Pseudomonas aeruginosa PAO1] gi|7229494|gb|AAF42852.1| mismatch repair protein MutU [Pseudomonas aeruginosa PAO1] gi|218774775|emb|CAW30592.1| DNA helicase II [Pseudomonas aeruginosa LESB58] gi|310883919|gb|EFQ42513.1| DNA helicase II [Pseudomonas aeruginosa 39016] Length = 728 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 104/592 (17%), Positives = 192/592 (32%), Gaps = 116/592 (19%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + L + YE A + V+DF +L++ DL + + Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + HIL+DE QDT+ +Q+ +R L + +L VGD+ QSIY + G Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A + + + +I L ++RSTA IL + + + + G Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + S + F+ + AR + Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 +I + + + +I +L R + ++ K I Sbjct: 338 SIESALKGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I R +++E I Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443 Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + S ++ I L H ++ ++ Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEK 503 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + L L + L + A+ + V++MT+H+ Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHS 563 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFLV +F HK Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + EE RL YVG+TRA +L++ + + Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPPA 641 >gi|254237872|ref|ZP_04931195.1| DNA helicase II [Pseudomonas aeruginosa C3719] gi|254242995|ref|ZP_04936317.1| DNA helicase II [Pseudomonas aeruginosa 2192] gi|126169803|gb|EAZ55314.1| DNA helicase II [Pseudomonas aeruginosa C3719] gi|126196373|gb|EAZ60436.1| DNA helicase II [Pseudomonas aeruginosa 2192] Length = 728 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 104/592 (17%), Positives = 192/592 (32%), Gaps = 116/592 (19%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + L + YE A + V+DF +L++ DL + + Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + HIL+DE QDT+ +Q+ +R L + +L VGD+ QSIY + G Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A + + + +I L ++RSTA IL + + + + G Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + S + F+ + AR + Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 +I + + + +I +L R + ++ K I Sbjct: 338 SIESALKGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I R +++E I Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443 Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + S ++ I L H ++ ++ Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEK 503 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + L L + L + A+ + V++MT+H+ Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHS 563 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFLV +F HK Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + EE RL YVG+TRA +L++ + + Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPPA 641 >gi|291085881|ref|ZP_06354319.2| DNA helicase II [Citrobacter youngae ATCC 29220] gi|291069706|gb|EFE07815.1| DNA helicase II [Citrobacter youngae ATCC 29220] Length = 738 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 184/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 290 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST +IL+ + + G L Sbjct: 291 ---GAETIRLEQNYRSTNNILSAANALIENNNGRLGKK---------------------L 326 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 327 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 367 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 368 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ + L H ++ R + G I+ LDE + T + Sbjct: 479 FMELVDALAQETADMPLHVQTDRVIKDSGLRMMYEQEKGEKGQTRIENLDELVTATRQFS 538 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRAT 667 >gi|290513159|ref|ZP_06552521.1| DNA helicase II [Klebsiella sp. 1_1_55] gi|289774370|gb|EFD82376.1| DNA helicase II [Klebsiella sp. 1_1_55] Length = 722 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 311 W-------TDGTDGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 351 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 352 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483 + DD +F ++ +P + + + R T+++ ++ A S Q Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLKEKVLAGRAASALQR 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 522 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 582 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 583 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 608 Query: 659 SDQLIICKHSNTS 671 +L + Sbjct: 609 MQKLTLTYAETRR 621 >gi|28377922|ref|NP_784814.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1] gi|308180103|ref|YP_003924231.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270756|emb|CAD63661.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1] gi|308045594|gb|ADN98137.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 755 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 105/752 (13%), Positives = 220/752 (29%), Gaps = 140/752 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L S + Sbjct: 30 GAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLLGESAQEVWVST 89 Query: 66 FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110 F L L + T + L +++ Q+ Sbjct: 90 FHALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRILTEQNIDSKKFDPRSILSAISNA 149 Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T +M+K + A ++ + Y+ + +DF+DLI+ T L K+ + Sbjct: 150 KNDLQTPEMYKESAASPFESVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L + + + L VGD QSIY Sbjct: 208 -LAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKY----------KNLCVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + + L ++RST IL+ + V + + Sbjct: 257 WRGANMENILDFEKDYPQ--------ADTVMLEQNYRSTKTILSAANAVINNNSTRRPKK 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW +++ + + +S Sbjct: 309 ---------------------LW------TENEPGDKISYYRGQSESDETH--------F 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D + D +L R + ++ I Sbjct: 334 VIAKIQESMQQDKM---------DYGDFAILYRTNAQSRVMEESL----VKANIPYTMVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I+D+++ ++ +D ++F ++ P + + K+ ++ Sbjct: 381 GNKFYDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSML 440 Query: 468 EYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 E ++EL + ++ S D IL + Sbjct: 441 EAASNVDMANGISARAKGALAKFAATMNELRAMREYLSVTDLTQEILDRTGYMKALKDAK 500 Query: 522 ------GNEVIDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRA-HSANHNE 571 I+ ++EFL+ T + + + + + L Sbjct: 501 ATKSLEAQARIENIEEFLSVTKQFDDSYQPEDEDSDKFVDFLADLALVSDVDNVEEEPQA 560 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL--------------- 605 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688 YVG+TRA +L + + + + + + + Sbjct: 606 -------------------AYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVEEIEPE 646 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +E + E P Sbjct: 647 LLKNENTLDGASSTGPKVPFGADRERRAFTPS 678 >gi|289625507|ref|ZP_06458461.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649762|ref|ZP_06481105.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. 2250] gi|330870933|gb|EGH05642.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986942|gb|EGH85045.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str. M301315] Length = 727 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|152985841|ref|YP_001351544.1| DNA-dependent helicase II [Pseudomonas aeruginosa PA7] gi|150960999|gb|ABR83024.1| DNA helicase II [Pseudomonas aeruginosa PA7] Length = 728 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 104/591 (17%), Positives = 192/591 (32%), Gaps = 116/591 (19%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + L + YE A + V+DF +L++ DL + + Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + HIL+DE QDT+ +Q+ +R L + +L VGD+ QSIY + G Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A + + + +I L ++RSTA IL + + + + G Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + S + F+ + AR + Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 +I + + + +I +L R + ++ K I Sbjct: 338 SIESALKGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I R +++E I Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443 Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + S ++ I L H ++ ++ Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLIGYHKEEKGEK 503 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + L L + L + A+ + V++MT+H+ Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHS 563 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFLV +F HK Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 + EE RL YVG+TRA +L++ + + Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPP 640 >gi|309751169|gb|ADO81153.1| DNA helicase II [Haemophilus influenzae R2866] Length = 727 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYKIYQDTCDRAGLVDFAELLIRAYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 277 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|127514313|ref|YP_001095510.1| DNA-dependent helicase II [Shewanella loihica PV-4] gi|126639608|gb|ABO25251.1| ATP-dependent DNA helicase UvrD [Shewanella loihica PV-4] Length = 726 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 99/587 (16%), Positives = 198/587 (33%), Gaps = 116/587 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + I + +IL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---ILEHYQERFKNILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L S + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRVLAG----------STANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPA------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RS+ +IL +++ + + G LW Sbjct: 274 --AQTIRLEQNYRSSGNILNASNELIANNPDRLGKK---------------------LW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + ++ F+ + + AR I I++ Sbjct: 310 ------TEDKDGEKIGLYCAFNEMDE-------ARFIVGRITDWQDMGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I ++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + + T R + T+++ + + + + + Sbjct: 403 DDAAFERIINTPTRGIGDRTLDILRSTARQQELTLWQTCLRLLDEKVLSGRAANAVRSFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541 I L S H ++ A + + + G + + L+E + Sbjct: 463 DLIVTLQQETAEQSLHRMTDHVIQASGLKAMYEAEKGEKARARVENLEELVTAARTFVMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + A + V++MT+H+AKGLE P+VF+ +F Sbjct: 523 EDLEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + +E RL YVGMTRA Sbjct: 583 QMAMDEG----------------------------------DRLDEERRLCYVGMTRAMK 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 QL I + + N + + + + +++ + S Sbjct: 609 QLYITYAESRRIYGRENYARPSRFIKEIPGDYVQEIRMRTSVSAPAS 655 >gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1] gi|121308074|gb|EAX48988.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1] Length = 733 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 102/630 (16%), Positives = 202/630 (32%), Gaps = 121/630 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + Y++ ++N +DF+DL++ LL++ + +R + + +ILIDE QDT+ Sbjct: 169 VAEVYRLYQQKLQQNNAVDFDDLLLLAVRLLERNEE---VRRRYQDKFQYILIDEYQDTN 225 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R L R + VGD QSIY++ GA+ + +L + Sbjct: 226 RAQYLLARLLAA----------KHRNICVVGDADQSIYAWRGADIRNILDFEADYP---- 271 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I+L ++RST IL + V + + Sbjct: 272 ----DAKVIKLEQNYRSTQTILAAANAVIENNTGRKPKA--------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + + FD + AR IA T++ + Sbjct: 307 LW-------TENSRGEPITHYLAFDERDE-------ARFIADTVTKLH---------TVY 343 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + VL R + +I I D IKD++A R IL Sbjct: 344 RASYGSMAVLYRTNAQSRVIEEAL----MRNGIPYTIVGGVKFYDRKEIKDILAYLRVIL 399 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQ 482 + D +S + ++ P + I ++ ++++ + + Sbjct: 400 NPADAVSLLRIINVPRRGVGDATIARLTDYAAQNGISLFDVVSNPDMVPGLTARAKRPLE 459 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 ++ + I LI + D ++ + + + L E L+ Sbjct: 460 NLAELIFNLIAVKDQLPVADLIERVMQDSGYLAELEKEQTPQADGRIENLRELLSVAKEF 519 Query: 540 EQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + +L+ ++ + + V +MT+H+AKGLE P VFL +F Sbjct: 520 ATTAAEDTLENFLAHVALVSDIDTAELA--DERVTLMTLHSAKGLEFPYVFLAGMEEGIF 577 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H + + EE RL YVG+TRA Sbjct: 578 PHSRTL----------------------------------MDEEEIEEERRLCYVGITRA 603 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH-----NDERVKKIKLTNSINKDEWIAYE 713 +L + + + + + + ++ +++ Sbjct: 604 ERKLYLTNARLRTIYGNTVMYPPSRFLAEIPAELFERHGGPARQTAAGAAVSPAPAATPR 663 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKL 743 + P + R + + ++ K Sbjct: 664 PAPVRPSAAAVSRPSAREWRVGDKAQHAKW 693 >gi|330952409|gb|EGH52669.1| DNA-dependent helicase II [Pseudomonas syringae Cit 7] gi|330970255|gb|EGH70321.1| DNA-dependent helicase II [Pseudomonas syringae pv. aceris str. M302273PT] Length = 727 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|291529911|emb|CBK95496.1| ATP-dependent DNA helicase PcrA [Eubacterium siraeum 70/3] Length = 792 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 92/551 (16%), Positives = 174/551 (31%), Gaps = 116/551 (21%) Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L+ AK + Y+ + LDF+D+I+ T L + + +I++DE Q Sbjct: 224 LSTAKTIYTDYQARLEAANALDFDDIIMLTVKLFAQ---CPDVLSHWQNRFKYIMVDEYQ 280 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q++++ L E L VGDE QSIY F GA + +L + Sbjct: 281 DTNAAQYKLVSLLAE----------GSGNLCVVGDEDQSIYRFRGATIENILSFEEQFG- 329 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +I+L ++RSTA IL + V + + + Sbjct: 330 --------AEVIKLEQNYRSTATILKAANAVIANNTQHKDKN------------------ 363 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + + + S+ A I I + + Sbjct: 364 ---LWSDLGDGDKIRMD--------------RFSTEQEEAMFITERILDGVKQGK----- 401 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D ++L R + + I + IKD++A Sbjct: 402 -----KYADHVILYRNNAQSRTVETTL----AKSGIPYKIIGGVRFYERKEIKDIIAYLC 452 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISK 480 + + D++ F ++ P+ + ++ + + + + + Sbjct: 453 VLNNNYDEVRFGRIVNEPVRGIGAATLDELNRVVSGMGISYVQAMCESDSLPSLSRKAKG 512 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538 + + EL S IL R+ + G ++ ++E + + Sbjct: 513 LVPLGETFSELSQHTDDISDGSLIDDILDRFGYREAMQRQGLEGEVRLENINELKSNMIT 572 Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + L E + ++ A+ ++ +MT+H+AKGLE VF+V + Sbjct: 573 FAKENEGAGLSEFLEQVALVSDMDSF--EADDDKAVLMTMHSAKGLEFDTVFVVGAEENI 630 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F EE RL YV +TR Sbjct: 631 FPG----------------------------------YRSQFDPMEIEEERRLAYVAITR 656 Query: 658 ASDQLIICKHS 668 A L Sbjct: 657 AKRHLYFTCAK 667 >gi|16767221|ref|NP_462836.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993889|ref|ZP_02574982.1| DNA helicase II [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197263905|ref|ZP_03163979.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|17865684|sp|Q05311|UVRD_SALTY RecName: Full=DNA helicase II gi|6960251|gb|AAF33441.1| 98% identity with E. coli DNA helicase (UVRD) (SP:P03018); contains similarity to Pfam family PF00580 (UvrD/REP helicase), score=812.9, E=1.2e-240, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422515|gb|AAL22795.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197242160|gb|EDY24780.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328129|gb|EDZ14893.1| DNA helicase II [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249074|emb|CBG26935.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996230|gb|ACY91115.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160466|emb|CBW19996.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915069|dbj|BAJ39043.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225469|gb|EFX50526.1| ATP-dependent DNA helicase UvrD/PcrA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132298|gb|ADX19728.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 720 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ +R L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I + Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|313809680|gb|EFS47414.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1] Length = 1072 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 149/995 (14%), Positives = 298/995 (29%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + D LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + I Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFQDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|269103724|ref|ZP_06156421.1| ATP-dependent DNA helicase UvrD/PcrA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163622|gb|EEZ42118.1| ATP-dependent DNA helicase UvrD/PcrA [Photobacterium damselae subsp. damselae CIP 102761] Length = 686 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 100/569 (17%), Positives = 189/569 (33%), Gaps = 116/569 (20%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + +++ + + A Y+EA + ++DF +L++ +L++ +IR Sbjct: 115 EGLRPHQIETFNDPVEQTWQRIYAAYQEACDRAGLVDFAELLLRAFELVRDN---KFIRE 171 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 HIL+DE QDT+ IQ+ +R + + VGD+ QSIY + G Sbjct: 172 HYQARFKHILVDEFQDTNSIQFAWLRLMAG----------PDCHVMIVGDDDQSIYGWRG 221 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + R R I L ++RST +IL +++ + G + Sbjct: 222 AKVENISRFLREFH--------DAKSIFLEQNYRSTGNILKAANELIANNNERMGKN--- 270 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 LW + + S S F+ L + AR Sbjct: 271 ------------------LW-------TDGADGDRISLYSAFNELDE-------ARFAVG 298 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 I ++ L R + ++ + Sbjct: 299 KIKEWRDQGGTL----------NEVAFLYRSNAQSRVLEEAL----IQAGMPYRIYGGMR 344 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470 + IKD ++ R I ++ DD +F ++ +P + + I R + T+++ Sbjct: 345 FFERQEIKDALSYLRLISNRNDDTAFERVVNTPTRGIGDRTLETIRLAARDRSMTMWQAS 404 Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 A + + I+ + L + + ++ R + G + Sbjct: 405 IALLDDQVLAGRAANALRRFIELVDALEDDTAELALYQQTDDVIRNSGLRAMYEQEKGEK 464 Query: 525 VI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 + L+E + T + E + L + L + + V++MT+H+ Sbjct: 465 AQARIENLEELVTATRQFEIPEEAQEMTHLAAFLSHAALEAGEGQADDFEDAVQLMTMHS 524 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF+V +F Sbjct: 525 AKGLEFPLVFMVGMEEGMFPSSRTT----------------------------------E 550 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + EE RL YVGMTRA +L + Sbjct: 551 EVGRLEEERRLCYVGMTRAMQKLYLTHAE 579 >gi|312972963|ref|ZP_07787136.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1827-70] gi|310332905|gb|EFQ00119.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1827-70] Length = 854 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 122/853 (14%), Positives = 270/853 (31%), Gaps = 129/853 (15%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + K++ L F+D++ + L+ + + I +IDE QD Sbjct: 4 RALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQD 62 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T Q+ + R + H L +GD KQ+IY+F GA+ ++ + Sbjct: 63 TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 114 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 T L ++RS ++ V+K+FS ++A E ++ Sbjct: 115 YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA---- 160 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362 + + P + W +S S +A+ A I + + + Sbjct: 161 ------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 214 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + R ++A DI VLVR R++ + L+ SV ++R + + L ++++ Sbjct: 215 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEML 271 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L + +++ E + + L + + + DI + E+ ++ Sbjct: 272 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDVVVEEFDGYR 323 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539 + + + + S + +L G ++ + E L L + Sbjct: 324 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 377 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L + I E + + + ++ + V+I+T+H +KGLE P+V+L + Sbjct: 378 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 437 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ N + + + E RLLYV +TR+ Sbjct: 438 EQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 484 Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 L + +KK + + E L I W T Sbjct: 485 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 544 Query: 718 ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761 + + E + + + D+ ++ + Sbjct: 545 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 604 Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + + + + + + G +H L + + N++ + ++ Sbjct: 605 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGG--FESQWE 661 Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859 L IT +L+ P+ ++ + + E+ I+ P Sbjct: 662 PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 721 Query: 860 ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900 ++ G ID + + ++ +YK++ + + Sbjct: 722 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 781 Query: 901 IAQLSIYEKILKD 913 Q +Y L Sbjct: 782 DLQYQLYTLALHR 794 >gi|168763938|ref|ZP_02788945.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501] gi|217325077|ref|ZP_03441161.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588] gi|189365967|gb|EDU84383.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501] gi|217321298|gb|EEC29722.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588] Length = 720 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMLLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|260592441|ref|ZP_05857899.1| ATP-dependent DNA helicase [Prevotella veroralis F0319] gi|260535487|gb|EEX18104.1| ATP-dependent DNA helicase [Prevotella veroralis F0319] Length = 843 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 105/640 (16%), Positives = 195/640 (30%), Gaps = 120/640 (18%) Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTL-ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 + + +++ I + + A + + YE ++ +DF+D+++ Sbjct: 146 VHNVISNAKNHLITASEYAEDRAAIERDRSAKMPAISMIYKAYEARCRQANAMDFDDILL 205 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 T L + +R + ++ +IL+DE QDT+ Q +I L E R Sbjct: 206 YTYILFRDH---QEVRNRYGEQFEYILVDEYQDTNYAQVSIISQLAE----------IHR 252 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + VGD+ QSIYSF GA +L K + + +L ++RST I+ Sbjct: 253 RVCVVGDDYQSIYSFRGANIDNILDFKNKFD--------EAKLFKLERNYRSTQLIVQAA 304 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + + E I G L++ S + Sbjct: 305 NSLMKHNE----------RQIPKNVYSKEDEGDKVLYKPCYSDRE--------------- 339 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 A +A + + + +L R + R Sbjct: 340 ----------EAMVVAKELKRI---------KHMDDCDYSNFAILYRTNAQSRAFEDEFR 380 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + I IKD++A R + + D+ +F ++ P + + Sbjct: 381 ----NQGIPYKIIGGLSFYQRKEIKDIIAYFRLVTNPNDEEAFRRIINYPTRGIGDATVK 436 Query: 455 K-ICTQRHETETVYEYIQKFANC-------GISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 K I + +++E I ++K I E I + Sbjct: 437 KIIDCAQMNGVSLWETIMDPVTHGLNVNKGTMTKLFTFRALISEFIKDVAQTDAYTLGCK 496 Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQE---LISELEQYPP 559 I+ + + E + L EF++ + N +E L L++ Sbjct: 497 IIEESGIKADLMLGSEPEDLARRENLAEFMSALQGFVDTNREEGREENVYLTDYLQEVAL 556 Query: 560 TIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + +V +MT+H AKGLE P VF+V +F Sbjct: 557 YTDADKEDDNAPKVTLMTIHAAKGLEFPTVFVVGLEENIFPSPMSSDS------------ 604 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 K EE RLLYV +TRA I+ N Sbjct: 605 ----------------------KRGLEEERRLLYVAITRAERHCILTNAKNRFRFGTMQI 642 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 + + D + V+ ++++ + Sbjct: 643 DSPSRFLRDIDASLLHVEDSASGLLGENRRRLSWDEDANE 682 >gi|187929519|ref|YP_001900006.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|309781705|ref|ZP_07676438.1| DNA helicase II [Ralstonia sp. 5_7_47FAA] gi|187726409|gb|ACD27574.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|308919346|gb|EFP65010.1| DNA helicase II [Ralstonia sp. 5_7_47FAA] Length = 786 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 113/715 (15%), Positives = 222/715 (31%), Gaps = 153/715 (21%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W + +VS + + Q + + Sbjct: 28 GAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTNKAAKEMTARLQAMLPINTRAMWIGT 87 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F L + L + + + + +K LK Q Sbjct: 88 FHGLCNRLLRAHYRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQYFINGA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ + L A Y+ ++ V+DF +L++ +LL+ D IR Sbjct: 148 KEQGLRAGDLEIANEYDRRMADLYAAYDAQCQREGVVDFAELLLRCYELLRYNDA---IR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + HIL+DE QDT+ +Q+ ++ L G +P +FAVGD+ QSIY+F Sbjct: 205 AHYQRRFKHILVDEFQDTNKLQYAWLKILAGLGEPGV----TPNAIFAVGDDDQSIYAFR 260 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA ++ +R + I+L ++RS IL + + S G + Sbjct: 261 GANVGNMVDFEREFRVE--------HRIKLEQNYRSHGHILDTANHLISHNTRRLGKNLR 312 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V++++ + A I Sbjct: 313 TD---------AGHGEPVRVYQAATDGQE--------------------------AGWIV 337 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + I T + +I +L R + +I I Sbjct: 338 DEIRDRIATG----------MSRSEIAILYRSNAQSRVIEHAL----FSAGIPYKVYGGL 383 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469 + IK +A + + + ++D +F ++ P + ++ R ++ Sbjct: 384 RFFERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAARLYGISLAAA 443 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528 + +K ++ I ++ + + + ++ A + G + I+ Sbjct: 444 VPYLTGAAGTKLSAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGQDRIEN 503 Query: 529 LDEFLNFTLRNEQNS-------------------------------------YSSLQELI 551 L E + + + L+ Sbjct: 504 LQELVTAAQAFVAEEGYGVDAIATALPVRHDAMLRIEGGEIDTASELVTDETPAEMTPLV 563 Query: 552 SELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + L A + V++MTVH AKGLE VVF+ +F H++ Sbjct: 564 AFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFHVVFITGLEEGLFPHENS------- 616 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++K EE RL+YV +TRA ++L + Sbjct: 617 ---------------------------QMEKDGLEEERRLMYVAITRARERLYLS 644 >gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM 1503] gi|289708590|gb|EFD72606.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM 1503] Length = 702 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 110/724 (15%), Positives = 202/724 (27%), Gaps = 136/724 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + L ++ Sbjct: 79 AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + + + Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L N P L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL+ + V + + Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + I+D++A R Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + A Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ EL + +L R++ + + +D L+E ++ Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542 Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581 + L LE+ H V +MT+HTAK Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF+ +F H Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 E RL YVG+TRA +L + + S+ ++ + + + R+ + Sbjct: 630 -ELSEERRLAYVGITRARQRLYVSRAIVRSSWGPADAQPGVAVSAGNPAGAHRLAAHRPE 688 Query: 702 NSIN 705 + Sbjct: 689 AVVQ 692 >gi|62290306|ref|YP_222099.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941] gi|82700230|ref|YP_414804.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308] gi|189024540|ref|YP_001935308.1| UvrD/REP helicase [Brucella abortus S19] gi|237815813|ref|ZP_04594810.1| DNA helicase II [Brucella abortus str. 2308 A] gi|254730639|ref|ZP_05189217.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|260546849|ref|ZP_05822588.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260758354|ref|ZP_05870702.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|62196438|gb|AAX74738.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941] gi|82616331|emb|CAJ11388.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189020112|gb|ACD72834.1| UvrD/REP helicase [Brucella abortus S19] gi|237789111|gb|EEP63322.1| DNA helicase II [Brucella abortus str. 2308 A] gi|260095899|gb|EEW79776.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260668672|gb|EEX55612.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] Length = 858 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 195/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAELDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V I+T+H+AKGLE VFL +F H+ Sbjct: 626 VNIITLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|126030797|pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex gi|126030798|pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex gi|126030803|pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex gi|126030804|pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex gi|126030807|pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex gi|126030808|pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex gi|126030811|pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex gi|126030812|pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex Length = 680 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I++ Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIVN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|261380715|ref|ZP_05985288.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703] gi|284796427|gb|EFC51774.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703] Length = 666 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 109/611 (17%), Positives = 205/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEDVVQTAANVWEQQTARVYASYQETLQSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q++ Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 A + I ++G D Q D VL R + Sbjct: 318 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R ++ + D IKD+++ R + + DD +F+ + +P + Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q + Q + I A+ + Sbjct: 417 LGKLNTYAHEHECSLYEAAQTEEALALLNHTNRQHLQAFMDMIESYRAKAETSEAGELIH 476 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + + R + ++ EL + Sbjct: 477 NLLREIDYENHLLANEEGKAGEIKWRNVTDLTGWLERKGEQDGKNIIELAQTIALMTLLE 536 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V++ T+H +KGLE P VFLV + H Sbjct: 537 GK-SEEEIDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEP 620 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 621 SRFIDEMPQED 631 >gi|145627832|ref|ZP_01783633.1| DNA helicase II [Haemophilus influenzae 22.1-21] gi|145639293|ref|ZP_01794899.1| DNA helicase II [Haemophilus influenzae PittII] gi|144979607|gb|EDJ89266.1| DNA helicase II [Haemophilus influenzae 22.1-21] gi|145271596|gb|EDK11507.1| DNA helicase II [Haemophilus influenzae PittII] Length = 726 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYKIYQDTCDRAGLVDFAELLIRAYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 276 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|260062807|ref|YP_003195887.1| putative helicase [Robiginitalea biformata HTCC2501] gi|88784375|gb|EAR15545.1| putative helicase [Robiginitalea biformata HTCC2501] Length = 771 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 111/721 (15%), Positives = 224/721 (31%), Gaps = 123/721 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEA 140 K + + K +++++ ++ I ++ F ++ ++ + + HY + Sbjct: 124 KEMGLDKDVYKYKQIQQRISSYKNSLITVKAYFQNPELMEADAMAKRPRLGEIYRHYVDR 183 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 K +DF+DL++ TN+LL + + +K + +IL+DE QDT+ Q+ ++R+L Sbjct: 184 CFKAGAMDFDDLLLRTNELLNRFPE---VLHKYQERFRYILVDEYQDTNHSQYLIVRALA 240 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + F + + VGD+ QSIYSF GA +L +R ++ L Sbjct: 241 DRF----------QNICVVGDDAQSIYSFRGANITNILNFQRDYD--------DVAVYRL 282 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST +I+ + V + +N V + Sbjct: 283 EQNYRSTKNIVGAANSVIARNKNQLEK---------------------------VVWTSN 315 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + P+ + S D+ R +A +I F + + VL Sbjct: 316 EEGPRIKLHRSPTDAEEG--------RFVASSI---------FEEKMRHQMPNGHFAVLY 358 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + I R I IKD++A R I++ D+ + + Sbjct: 359 RTNSQSRAIEDALR----KRDIPYRIYGGLSFYQRKEIKDVLAYLRLIVNPGDEEALKRV 414 Query: 441 LKSPLFNFSEDDIFKICTQR--------HETETVYEYIQKFANCGISKFQHVIKYIHELI 492 + P + + K+ E + K I Sbjct: 415 VNFPTRGIGQTTMDKLTVAANASGRTIFEHIENLESEPLGLNRGTRGKLSDFATMIRSFQ 474 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSS 546 + Q + +F E ++ ++E LN ++ + Sbjct: 475 VLNQSADAFTLAEHVAKKSGLLLEFKKDGTPEGIARMENIEELLNGIKDFVEGQKEVADA 534 Query: 547 LQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 +L LE + + V +MT+H AKGLE P V++V +F Sbjct: 535 KGDLSEFLEDVALATDMDKDTGDEDRVALMTIHLAKGLEFPYVYIVGMEEDLFPS----- 589 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + +S EE RL YV +TRA Q + Sbjct: 590 -----------------------------AMSMNTRSELEEERRLFYVALTRAEKQAYLT 620 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 N K + + ++ + ++ I + ++ + Sbjct: 621 YTQNRYRWGKLIDAEPSR--FIEEIEESYIENLTPVDNYRYRPLIDSDIFGDVDKSRLRQ 678 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 ++ + ++ + S + G + Sbjct: 679 KKPVAGTPPSRTGPKPEQLRRLRKLKPDIASPKGSDTVIADLQEGTRVDHSRFGA--GTV 736 Query: 786 I 786 + Sbjct: 737 L 737 >gi|299066163|emb|CBJ37346.1| DNA helicase II [Ralstonia solanacearum CMR15] Length = 794 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 113/730 (15%), Positives = 221/730 (30%), Gaps = 159/730 (21%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K Q +++ + L A Y+ ++ V+DF +L++ +LL Sbjct: 138 KSVQYFINGAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFSELLLRCYELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + D IR + HIL+DE QDT+ +Q+ ++ L G +P +FAVG Sbjct: 198 RYNDA---IRVHYQRRFKHILVDEFQDTNKLQYAWLKILAGLGEAGV----TPNAIFAVG 250 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA ++ +R + I+L ++RS +IL + + + Sbjct: 251 DDDQSIYAFRGANVGNMVDFEREFR--------VAHRIKLEQNYRSHGNILDTANHLIAH 302 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + + G V+++ + Sbjct: 303 NTRRLGKNLRTD---------AGHGEPVRVYPSATDGQE--------------------- 332 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I I + T +I +L R + +I Sbjct: 333 -----AGWIVEEIRERIASGTA----------RSEIAILYRSNAQSRVIEHAL----FSV 373 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + IK +A + + + ++D +F ++ P + ++ Sbjct: 374 GIPYKVYGGLRFFERAEIKHALAYLQLLENADNDAAFGRVVNFPARGVGARSLEQLQDAA 433 Query: 461 H-ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 ++ + +K ++ I ++ + + + ++ A + Sbjct: 434 KLYGVSLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQG 493 Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549 G + I+ L E + + Sbjct: 494 EKEGLDRIENLQELVTAAQAFVAEEGYGVDAIATALPMRHDAMLRIEGGETDSDAVTELV 553 Query: 550 ----------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L++ L A + V++MTVH AKGLE VVF+ +F Sbjct: 554 ADETPTEMTPLVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEGLF 613 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H++ EE RL+YV +TRA Sbjct: 614 PHENSL----------------------------------QDTDGLEEERRLMYVAITRA 639 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 ++L + V + +W+ + + Sbjct: 640 RERLYLS--------------FAQSRVLHGQIRYHIRSRFFDELPEATLKWLTPPQAGY- 684 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 +P R + + + ++ F + NE Y P+ G T ++ + Sbjct: 685 ---SPTRRAQGGQGGQGDSAWGREWFKRPERGDNEAYTGRPTGGMDTGNTYADTKRAAGT 741 Query: 779 TFNRG-LIIH 787 F G + H Sbjct: 742 GFRVGQSVFH 751 >gi|54310566|ref|YP_131586.1| DNA-dependent helicase II [Photobacterium profundum SS9] gi|46915009|emb|CAG21784.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum SS9] Length = 724 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 101/551 (18%), Positives = 181/551 (32%), Gaps = 119/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ +L++ IR HIL+DE QDT+ I Sbjct: 172 RIYTAYQEACDRAGLVDFAELLLRAFELVRDN---KHIREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + R R Sbjct: 229 QFAWLRLMAG----------VDCNVMIVGDDDQSIYGWRGAQVENIQRFLRDF------- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 S I L ++RST +IL +++ + G LW Sbjct: 272 -TNASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + S S F+ L + AR I + Sbjct: 310 -------TDGEDGELISLYSAFNELDE-------ARFAVGKIKEWRNE---------KGG 346 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D L R + ++ + + +KD +A R + ++ Sbjct: 347 SLSDTAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEVKDSLAYLRLMANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484 DD SF ++ +P + + I R + T+++ + + Sbjct: 403 NDDASFERVVNTPTRGLGDRTLETIRLAARDRSVTMWQASVSLLEEQVLAGRAANSLRRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-- 539 I+ ++ L + ++ R + G + + L+E + T + Sbjct: 463 IELVNALEDDTRDLPLFQQTDDVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFVV 522 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E + L +S + + V++MT+H+AKGLE P+VF+V + Sbjct: 523 PEEAEEMTPLAAFLSHAALEAGEGQADDFE--DAVQLMTMHSAKGLEFPIVFMVGVEEGM 580 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + EE RL YVGMTR Sbjct: 581 FPSSRTT----------------------------------EEVGRLEEERRLCYVGMTR 606 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 607 AMKKLYITYAE 617 >gi|313891437|ref|ZP_07825053.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII 345-E] gi|313120212|gb|EFR43388.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII 345-E] Length = 1283 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 131/670 (19%), Positives = 226/670 (33%), Gaps = 53/670 (7%) Query: 36 SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL--------TQKFTPQK-NIIT 86 ++ T+ ++ + + +E ++ TQ P+ I Sbjct: 249 EKALMNYTETLSEELAAISILCNAKTWKEWHETINEITFRSLKPVKKTQAENPEALEIYK 308 Query: 87 QEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKK 143 I ++K+KL + + I + K + + Y + K+K Sbjct: 309 TTIQNARQNIKKKLTEISTMYFAIDEARWIEEMKKTCPTIEILSKITTEFYNEYLKRKQK 368 Query: 144 NCVLDFEDLIINTNDLL---------KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 ++F D ++L K+ + ++ ++ I+IDE QDT+ IQ Sbjct: 369 ESTMEFSDTTHYALNILIKKHKLENGKQEIELSEAAKELQKKYKEIMIDEYQDTNSIQEL 428 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 + + S+ R LF VGD KQSIY F A+ L + K Sbjct: 429 ITTLI-----------SNGRNLFMVGDLKQSIYRFRMADHTIFLDKYSTFTKDENAKN-- 475 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR-IGQVGTVQLWEQ 313 +I L +FRS +L+ ++ +F N + L + R + + Sbjct: 476 -RLIVLNKNFRSDHALLSSINYIFRQIMNPEILELSYNDDEALHAGRLQETPPETYIGNK 534 Query: 314 VVSQHDSQCNPQQESWTSYFDSL-PQESSASILARRIAYTISNMIGTDTIF--SNGKKRV 370 +E D Q + R IA I N+I +G R Sbjct: 535 EHGSVSINIINNKELEEKISDQDKSQIENGETEIRYIAEEIKNIINNKLTVTNPDGTYRK 594 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KDI +L R L + N+Y I + D K L AL I + Sbjct: 595 AEYKDIAILARS---LSKKASLFLKIFNEYNIPAATQNDDNFLDATETKILRALLEIIDN 651 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHV 484 DL V +L+S + E + KI ++E ET+ + + K + Sbjct: 652 PYRDLPLVAVLRSYFADMDETEFAKIAIAKNELKTQTWWETLPLTEKYVSEKTFEKIKKF 711 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543 I+ + + S + IL G ++ F L ++ Sbjct: 712 IEKYNNWKDYSLNNSISELLQHILEETGYMTYISGLAEGTFRKSHIENFYKLALDFDEKE 771 Query: 544 YSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L + LE+ + N V+IMT+H +KGLE P+VFLV+ Sbjct: 772 KNGLYRFLYMLEKLTEEGRTPEGKSIKTETNAVQIMTIHKSKGLEYPIVFLVNCNKTFNE 831 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ + + +S + E RLLYV MTRA Sbjct: 832 TDYRTSYITHKTMGLGLHYYSKEHTAHWPTLYWYATKEDSIRSNKAEEARLLYVAMTRAK 891 Query: 660 DQLIICKHSN 669 D+L I + Sbjct: 892 DKLYITGTTK 901 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 93/291 (31%), Gaps = 24/291 (8%) Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENTPL 724 ++ T+ ++ + + T + + ++ +L + A + + Sbjct: 994 YAQTNEQQNTKENTEENALEFFKPENDTTVPERLNRQLTWTYPYPQATKTPVKLTATQAV 1053 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784 + + E+ + ++ E N + + + + G Sbjct: 1054 AMKNLEENRWTEENENDTVLVTEIDETKENETTNEIPPEFRAEPEFMQESKPITGTSYGT 1113 Query: 785 IIHKLLQVIFTLP---EHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENP 835 ++HK ++++ E + IT + ++ K + + I +++P Sbjct: 1114 LMHKTMELLPFEKLENETEITTEITKLKNNNSITDEEYEILTQKGKHSPVTKIMTFIKSP 1173 Query: 836 MMTTAMSCDS-YSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTH 886 + + E+ S + + I + G ID + + I I +YKT Sbjct: 1174 LGNELKNASEIKKEMPFSILLPANDFYKNCEKGEKIFMQGIIDCMFETDGKITIIDYKTD 1233 Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIP 936 + E + + QL IY K + + I+ S K +P Sbjct: 1234 KT--KNEEKLVNHYKTQLQIYANAASKIL-KKEIKNIYIWSFSIGKAIKVP 1281 >gi|260911425|ref|ZP_05918016.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str. F0295] gi|260634472|gb|EEX52571.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str. F0295] Length = 823 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 95/667 (14%), Positives = 199/667 (29%), Gaps = 130/667 (19%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + A + A Y + + +DF+DL++ T L + + +R Sbjct: 162 ELMERDARERMPAVHK----VYATYMQRCRLANAMDFDDLLLLTYQLFAEHED---VRKI 214 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + ++L+DE QDT+ +Q ++ LT++ R + VGD+ QSIY F GA Sbjct: 215 YAERFQYVLVDEYQDTNHVQQLIVTQLTKE----------HRRICVVGDDAQSIYGFRGA 264 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +L ++ + + +L ++RST +I+ + + S + S Sbjct: 265 DIDNILDFQQQFPE--------ARLFKLEQNYRSTQNIVKAANSLISHNQRQIKKDVYSQ 316 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + L + + A + Sbjct: 317 N---------DLGEKITLKPVYSDKEE--------------------------ALVVCND 341 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++ ++ Q D +L R + R I Sbjct: 342 IKRIMKSEEG---------QYSDFAILYRTNSQSRSFEDELR----RQSIPYRIYGGMSF 388 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQ 471 IKD++A R +++ +D+ +F ++ P + + K+ + E + ++ + Sbjct: 389 YQRKEIKDIIAYFRLVMNVDDEEAFKRIVNYPARGIGDTTLAKVTMAAQQNEVSCWQVLA 448 Query: 472 KFANCG-------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 A+ +K Q ++ + ++ I+ + + E Sbjct: 449 DPAHYHLDVNKGTWTKLQKFRDMVNGFVAEVATLDAYELGIKIIKESGIQADLYATSDTE 508 Query: 525 ---VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMT 576 + L E + + L + L++ + V +MT Sbjct: 509 SLSRQENLQELVGGLKEFVDIRREEGNEDEVFLGNYLQEVSLLSDLDSEGDEESRVVLMT 568 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 VH+AKGLE P VF+V +F + Sbjct: 569 VHSAKGLEFPTVFVVGLEENIFPSPRSTDSPRLLEEERRLL------------------- 609 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND---- 692 YV +TRA I+ N + T + D N Sbjct: 610 ---------------YVAITRAEKHCILTCAKNRYRFGRMEFDTPSRFISDIDPNLLNVQ 654 Query: 693 ---ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749 + + DE + + E+ + ++ + + + + Sbjct: 655 NPMAEYSTPRFERRLQSDEQPSARYYGGRDTAGTYEKRSANPRFLNSRPVASQFMADPIP 714 Query: 750 DINEPYI 756 + P Sbjct: 715 NPAHPRK 721 >gi|145637060|ref|ZP_01792723.1| DNA helicase II [Haemophilus influenzae PittHH] gi|145269714|gb|EDK09654.1| DNA helicase II [Haemophilus influenzae PittHH] Length = 726 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYKIYQDTCDRAGLVDFAELLIRAYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 276 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYAAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|167750343|ref|ZP_02422470.1| hypothetical protein EUBSIR_01317 [Eubacterium siraeum DSM 15702] gi|167656703|gb|EDS00833.1| hypothetical protein EUBSIR_01317 [Eubacterium siraeum DSM 15702] Length = 792 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 92/551 (16%), Positives = 173/551 (31%), Gaps = 116/551 (21%) Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L+ AK + Y+ + LDF+D+I+ T L + +I++DE Q Sbjct: 224 LSTAKTIYTDYQARLEAANALDFDDIIMLTVKLFAH---CPDVLSHWQNRFRYIMVDEYQ 280 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q++++ L E L VGDE QSIY F GA + +L + Sbjct: 281 DTNAAQYKLVSLLAE----------GSGNLCVVGDEDQSIYRFRGATIENILSFEEQFG- 329 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +I+L ++RSTA IL + V + + + Sbjct: 330 --------AEVIKLEQNYRSTATILKAANAVIANNTQHKDKN------------------ 363 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + + + S+ A I I + + Sbjct: 364 ---LWSDLGDGDKIRMD--------------RFSTEQEEAMFITERILDGVKQGK----- 401 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D ++L R + + I + IKD++A Sbjct: 402 -----KYADHVILYRNNAQSRTVETTL----AKSGIPYKIIGGVRFYERKEIKDIIAYLC 452 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISK 480 + + D++ F ++ P+ + ++ + + + + + Sbjct: 453 VLNNNYDEVRFGRIVNEPVRGIGAATLDELNRVVSGMGISYVQAMCESDSLPSLSRKAKV 512 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538 + + EL S IL R+ + G ++ ++E + + Sbjct: 513 LVPLGETFSELSQHTDDISDGSLIDDILDRFGYREAMQRQGLEGEVRLENINELKSNMIT 572 Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + L E + ++ A+ ++ +MT+H+AKGLE VF+V + Sbjct: 573 FAKENEGAGLSEFLEQVALVSDMDSF--EADDDKAVLMTMHSAKGLEFDTVFVVGAEENI 630 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F EE RL YV +TR Sbjct: 631 FPG----------------------------------YRSQFDPMEIEEERRLAYVAITR 656 Query: 658 ASDQLIICKHS 668 A L Sbjct: 657 AKRHLYFTCAK 667 >gi|238783717|ref|ZP_04627737.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia bercovieri ATCC 43970] gi|238715430|gb|EEQ07422.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia bercovieri ATCC 43970] Length = 1148 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 131/977 (13%), Positives = 298/977 (30%), Gaps = 144/977 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 + I + L + +L +G A+ L + Sbjct: 169 QQIIVQIDALKTQWCEAAPELEALISSSGVDKRSYSARYLPSWLEKVGAWAEQETTDYQL 228 Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 + +++I++++ K + Q DR + L + Sbjct: 229 PKELEKFRQSILSEKTKKGA--------APQHALFGAIDRIFEQPLTLRDLILARAISEI 280 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 ++ K++ L F+DL+ + L++ + I +IDE QDT Q+ Sbjct: 281 RTSVQQEKRQRAELGFDDLLSKLDVALQQPG-GELLAQSIRSRYPVAMIDEFQDTDPQQY 339 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 + +L L +GD KQ+IY+F GA+ +R + T Sbjct: 340 RIFHTLYSG--------QKECGLLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT---- 387 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 L ++RS+ ++ V+++FS+ + + + + + Sbjct: 388 ------LETNWRSSFPMVQSVNRLFSLVDVPFLFEQIPFINVS----------AAEKNSR 431 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKK 368 + + + P W + + ++A++ A I + + + + Sbjct: 432 LSFEIKGKKQPAISFWLQPGEGVGVSEYQQLMAQQCAAQIRDWLTAGQNGLAQLVTVDGS 491 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R +QA DI +LVR R + L+ L SV ++R + D KDL+ L + + Sbjct: 492 RPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAEAKDLLWLLQAV 548 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 L+ E + + + + + + + + + + + V+ + Sbjct: 549 LAPEQERALRSAMATGVLGLDAKMLDALNHDERAWDALVAEFDGYRQHWQR--RGVLPML 606 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545 E++ +L G ++ L E L L +E Sbjct: 607 REIMAHRH------LAENLLATPGGERRLTDVL------HLGELLQEAASQLDSEHALIR 654 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L + I++ + ++ + V+++T+H +KGLE P+V+L G+ + + Sbjct: 655 WLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQQQEVLYH 714 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII- 664 + N ++ ++ E RLLYV +TRA + Sbjct: 715 DRLSFEAL-------------LDLNADAESQALAEEERLAEDLRLLYVALTRAVYHCSVG 761 Query: 665 CKHSNTSNEKKSNQRTWYD----------MVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 KK + + + D+ + +++ ++ + +A Sbjct: 762 IAPLIKGGRKKQGESDMHRSALGYLVQQGLAGDAQYLADKLAELTAVTDGDISVSLAERP 821 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKK-----------------LFSPIKNDINEPYIL 757 + P + + Q P+ + E Sbjct: 822 DDTPWQPQPEILPALAARQFNRQVQDYWRVTSYSGLQQHGSGKGGASQPLNVPLQELLPR 881 Query: 758 NPSTIDTKGKTNLES---LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNA 813 + + E+ + + G +H LL+ + ++ Sbjct: 882 LDTDAVGEQVLITEANLTPHTFPRGAAPGTFLHDLLEQMNFSQPIEQSWLAEQLQLQGFG 941 Query: 814 KLWPAKEYKNLLLSITRLLENP--MMTTAMSCDSYSEVSVSGKINCPKK----------- 860 + W Y+ L ++ L + +E+ I+ + Sbjct: 942 EQWSPMLYQWLNDTVQVPLNKSGVTLAGLTPQSKQAELQFYLPIDTLLRASELDALIKSY 1001 Query: 861 ---------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY------- 898 ++ G ID + Q ++ +YK++ + + Sbjct: 1002 DSLSRQCPALDFLQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEESSAYTQEAMAQAMA 1061 Query: 899 --THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1062 EHRYDLQYQLYTLALHR 1078 >gi|313113915|ref|ZP_07799473.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255] gi|310623754|gb|EFQ07151.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255] Length = 892 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 103/628 (16%), Positives = 194/628 (30%), Gaps = 124/628 (19%) Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148 ++ K +K + + ++ L + A YE+ K+ D Sbjct: 188 VDDKFLPIKAAINQMSRWKDQLVSPEQALASPAKDTK-GALTARIYAAYEKRLKEAGAFD 246 Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F+DLI T LL + +R + ++L+DE QDTS+ Q+ ++ LT Sbjct: 247 FDDLIYQTVQLLAEH---KDVRDFYQNKYRYLLVDEYQDTSVAQFRLVSLLTG------- 296 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 + + VGD+ QSIY F GA + +L +RI I L ++RST+ Sbjct: 297 ---PEKNICVVGDDDQSIYRFRGATIENILNFERIYP--------GTKTIRLEQNYRSTS 345 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 +IL + V +G + LW Q Sbjct: 346 NILNAANCVIQHNTERKGKT---------------------LWTSNGEGDKVQ------- 377 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388 + + A IA I + D +L R + Sbjct: 378 -------VYTAENEQDEASHIADVIGQHLKEGG----------HLADHAILYRMNAQSAP 420 Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448 I I D +KD+ + + + DD+ ++ P Sbjct: 421 IESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARKI 476 Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPHD 502 + I + I A+ + L + + + Sbjct: 477 GATTVEVIADLATQEGVSMLDIIGHADQYAKLSRAVMPLLKFWQIYQRLQDSLETRTLDE 536 Query: 503 FFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISEL 554 F ++ + + + + L + +N + ++L+ + ++ Sbjct: 537 FAADVIELTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQHGEEATLEGYLEDI 596 Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614 + ++V +MT+H+AKGLE P VFL+ VF + K Sbjct: 597 ALISDIDSYN--ESADQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSK---------- 644 Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---S 671 ++ EE RL YVG+TRA +L I + Sbjct: 645 ------------------------YSEADLEEERRLAYVGITRAKKELYISNSVSRMLYG 680 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +++ + + + + R ++ Sbjct: 681 RTQRNEPSRFLREIEPEYIEETRSPVLE 708 >gi|315615205|gb|EFU95842.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 3431] Length = 854 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 122/853 (14%), Positives = 271/853 (31%), Gaps = 129/853 (15%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + K++ L F+D++ + L+ + + I +IDE QD Sbjct: 4 RALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQD 62 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T Q+ + R + H L +GD KQ+IY+F GA+ ++ + Sbjct: 63 TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 114 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 T L ++RS ++ V+K+FS ++A E ++ Sbjct: 115 YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA---- 160 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362 + + P + W +S S +A+ A I + + + Sbjct: 161 ------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 214 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + R ++A DI VLVR R++ + L+ SV ++R + + L ++++ Sbjct: 215 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEML 271 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L + +++ E + + L + + + DI + E+ ++ Sbjct: 272 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDVVVEEFDGYR 323 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539 + + + + S + +L G ++ + E L L + Sbjct: 324 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 377 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L + I E + + + ++ + V+I+T+H +KGLE P+V+L + Sbjct: 378 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 437 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ N + + + E RLLYV +TR+ Sbjct: 438 EQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 484 Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 L + +KK + + E L I W T Sbjct: 485 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 544 Query: 718 ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761 + + E + + + D+ ++ + Sbjct: 545 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 604 Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + + + + + + G +H L + + N++ + + ++ Sbjct: 605 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVRE--KQELGGFESQWE 661 Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859 L IT +L+ P+ ++ + + E+ I+ P Sbjct: 662 PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 721 Query: 860 ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900 ++ G ID + + ++ +YK++ + + Sbjct: 722 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 781 Query: 901 IAQLSIYEKILKD 913 Q +Y L Sbjct: 782 DLQYQLYTLALHR 794 >gi|254556106|ref|YP_003062523.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1] gi|254045033|gb|ACT61826.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1] Length = 755 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 105/752 (13%), Positives = 219/752 (29%), Gaps = 140/752 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + V+ N + ++ L S + Sbjct: 30 GAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLLGESAQEVWVST 89 Query: 66 FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110 F L L + T + L +++ Q+ Sbjct: 90 FHALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRILTEQNIDSKKFDPRSILSAISNA 149 Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T +M+K + A ++ + Y+ + +DF+DLI+ T L K+ + Sbjct: 150 KNDLQTPEMYKESAASPFESVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPET-- 207 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + ++I +DE QDT+ Q+ ++ L + + + L VGD QSIY Sbjct: 208 -LAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKY----------KNLCVVGDADQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L ++ + + L ++RST IL+ + V + + Sbjct: 257 WRGANMENILDFEKDYPQ--------ADTVMLEQNYRSTKTILSAANAVINNNSTRRPKK 308 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW +++ + + +S Sbjct: 309 ---------------------LW------TENEPGDKISYYRGQSESDETH--------F 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D + D +L R + ++ I Sbjct: 334 VIAKIQESMQQDKM---------DYGDFAILYRTNAQSRVMEESL----VKANIPYTMVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 D I+D+++ ++ +D ++F ++ P + + K+ ++ Sbjct: 381 GNKFYDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSML 440 Query: 468 EYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 E ++EL + ++ S D IL + Sbjct: 441 EAASNVDMANGISARAKGALAKFAATMNELRAMREYLSVTDLTQEILDRTGYMKALKDAK 500 Query: 522 ------GNEVIDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRA-HSANHNE 571 I+ ++EFL+ T + + + + + L Sbjct: 501 ATKSLEAQARIENIEEFLSVTKQFDDSYQPEDEDSDKFVDFLADLALVSDVDNVEEEPQA 560 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE PVVFL+ +F Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL--------------- 605 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688 YVG+TRA +L + + + + + + + Sbjct: 606 -------------------AYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVEEIEPE 646 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +E E P Sbjct: 647 LLKNENTLDGASNTGPKVPFGEDRERRAFTPS 678 >gi|199597352|ref|ZP_03210783.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|199591868|gb|EDY99943.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001] Length = 750 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 122/673 (18%), Positives = 207/673 (30%), Gaps = 135/673 (20%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + K + P + K +A E+ + Sbjct: 66 AAREMRERVGKLV--DPEIARDIWVSTFHALCVRILRRDIDKL-GYNRAFTIADPAEQLT 122 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L+ P K + I K +L Q TY ++ Sbjct: 123 LVKHILADFNLDP-KRYDPKSILGAISGAKNELIDPQ-----------TYSDEQANSPFT 170 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + A Y++ + + LDF+DLI+ T L +K + ++ +I +DE QD Sbjct: 171 KTVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET---LGFYQRKFRYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++ L E + L VGD QSIY + GA + +L K+ K Sbjct: 228 TNEAQYRLVHMLAEGY----------HNLCVVGDADQSIYGWRGANMQNILDFKKDYPK- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST IL+ + V N Q + Sbjct: 277 -------AQVILLEQNYRSTKTILSAANDVIKNNLNRQAKT------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ + + + S + A + I + + Sbjct: 311 --LW------TENATGDKITYYRA--------QSETDEAIFVIRRIEAEMAQNHR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D I+D +A R Sbjct: 350 ----KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYDRKEIRDALAYFRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKF 481 +++ +DD+SF ++ P + K+ ++ E + Sbjct: 402 VVNPDDDMSFNRIVNEPKRGIGNTSVAKLEAFANQHDWSLLEAAANAELSPISGKARGNL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 K I L + + + IL + E + L+E L+ T Sbjct: 462 AEFGKMIQRLGQRRKDLNVTEMMQAILDDSGYLGALRAANTLEAETRVENLEELLSVTQG 521 Query: 539 N------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 E + ++EL + EV +MT+H AKGLE PVVFLV Sbjct: 522 FDARYQPENEDSDIFVDFLAELALLSDQD--EVEEDAQEVTLMTLHAAKGLEFPVVFLVG 579 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F + + EE RL Y Sbjct: 580 MEEGLFPLS----------------------------------RAAMDEGELEEERRLAY 605 Query: 653 VGMTRASDQLIIC 665 VG+TRA +L + Sbjct: 606 VGITRAKQKLYLT 618 >gi|124010006|ref|ZP_01694669.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134] gi|123983964|gb|EAY24352.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134] Length = 743 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 97/581 (16%), Positives = 194/581 (33%), Gaps = 114/581 (19%) Query: 96 LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLII 154 + ++ +++ I R+ N + A + Y+E K+ +DF+DL+ Sbjct: 139 VLNRISGAKNRLISYREYLNNPIYAEDDRAYRRPEIGRIYKIYQERAIKSNAMDFDDLLF 198 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 NTN L + + K Q+ ++LIDE QDT+L Q+ ++R L + Sbjct: 199 NTNILFRDHPAA---LQKYQQKFKYLLIDEFQDTNLSQYLIVRRLAA----------AHH 245 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + VGD+ QSIY+F GA+ + +L ++ I L ++RST I+ Sbjct: 246 NICVVGDDAQSIYAFRGADIQNILNFEKDYPT--------LQTIRLEQNYRSTKTIVKAA 297 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + + + + +W + + + F Sbjct: 298 NSLIAKNKAQLQK---------------------DVW----------TSNEDGNLIRLFK 326 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 ++ ++A+ I + + D +L R + I R Sbjct: 327 AMSDNEEGKMVAQSIFEE-------------KMQHQLGNNDFAILYRTNAQSRSIEEALR 373 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 I IKDL++ R+ ++ +D+ + ++ P + Sbjct: 374 ----KANIKYKIIGGLSFYQRREIKDLISYLRYTVNHKDEEALKRIINLPKRGIGNTTLQ 429 Query: 455 K-ICTQRHETETVYEYIQKFANCGISK----FQHVIKYIHELIHIAQFCSPHDFFTLILG 509 K + T ++E I + + I + + + +L+ Sbjct: 430 KVLATAYESELPLWEVISNIRKYVTGRATTAIAGFAELIKKFEDASTKLDAFETASLVAK 489 Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + E + + E LN N + ++L + L++ + Sbjct: 490 ESGLLKDLYEDKTIEGLSRYENVQELLNAIKEFVDNPDNQEKDLSAFLQEVSLATSADEA 549 Query: 567 AN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + +V +MT+H AKGLE V++V ++F + Sbjct: 550 EDDGEEKVTLMTIHAAKGLEFQQVYVVGLEEELFPSQMALSS------------------ 591 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++ EE RL YV +TRA +L + Sbjct: 592 ----------------RNELEEERRLFYVAITRAEKKLTLS 616 >gi|50842799|ref|YP_056026.1| putative ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|289425489|ref|ZP_06427266.1| UvrD/REP helicase [Propionibacterium acnes SK187] gi|295130853|ref|YP_003581516.1| UvrD/REP helicase [Propionibacterium acnes SK137] gi|50840401|gb|AAT83068.1| putative ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|289154467|gb|EFD03155.1| UvrD/REP helicase [Propionibacterium acnes SK187] gi|291376029|gb|ADD99883.1| UvrD/REP helicase [Propionibacterium acnes SK137] gi|313764135|gb|EFS35499.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1] gi|313819377|gb|EFS57091.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2] gi|313820642|gb|EFS58356.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1] gi|313822553|gb|EFS60267.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2] gi|313827479|gb|EFS65193.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2] gi|313830016|gb|EFS67730.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1] gi|313832980|gb|EFS70694.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1] gi|313838405|gb|EFS76119.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1] gi|314914865|gb|EFS78696.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4] gi|314918020|gb|EFS81851.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1] gi|314920396|gb|EFS84227.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3] gi|314924885|gb|EFS88716.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3] gi|314929976|gb|EFS93807.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1] gi|314956488|gb|EFT00776.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1] gi|314957332|gb|EFT01435.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1] gi|314960467|gb|EFT04569.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2] gi|314972837|gb|EFT16934.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1] gi|314975741|gb|EFT19836.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1] gi|314983661|gb|EFT27753.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1] gi|314986296|gb|EFT30388.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2] gi|314989617|gb|EFT33708.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3] gi|315080858|gb|EFT52834.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1] gi|315084654|gb|EFT56630.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2] gi|315085339|gb|EFT57315.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3] gi|315095786|gb|EFT67762.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1] gi|315101553|gb|EFT73529.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1] gi|315105905|gb|EFT77881.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1] gi|327329833|gb|EGE71588.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL096PA2] gi|327442647|gb|EGE89301.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1] gi|327443715|gb|EGE90369.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2] gi|327452206|gb|EGE98860.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3] gi|327452695|gb|EGE99349.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2] gi|328752851|gb|EGF66467.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2] gi|328753882|gb|EGF67498.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1] gi|328761486|gb|EGF75010.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL099PA1] Length = 1072 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 149/995 (14%), Positives = 298/995 (29%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + D LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + I Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|68249734|ref|YP_248846.1| DNA-dependent helicase II [Haemophilus influenzae 86-028NP] gi|68057933|gb|AAX88186.1| DNA helicase II [Haemophilus influenzae 86-028NP] Length = 727 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 194/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L+ + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILSG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYAAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|331643504|ref|ZP_08344635.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H736] gi|331036975|gb|EGI09199.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H736] Length = 1183 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 520 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 637 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 789 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 790 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 909 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 910 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 970 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1026 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1027 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123 >gi|160877119|ref|YP_001556435.1| DNA-dependent helicase II [Shewanella baltica OS195] gi|160862641|gb|ABX51175.1| DNA helicase II [Shewanella baltica OS195] gi|315269321|gb|ADT96174.1| DNA helicase II [Shewanella baltica OS678] Length = 722 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 96/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQDRFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFP------- 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 273 -SATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I +++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKD 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R T+++ + A + + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQHELTLWQASMRLLDEKVLAGRAANSVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I + Q + ++ A + + + G + + L+E + E Sbjct: 463 DLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNGFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|213968510|ref|ZP_03396653.1| DNA helicase II [Pseudomonas syringae pv. tomato T1] gi|301384752|ref|ZP_07233170.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato Max13] gi|302133168|ref|ZP_07259158.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926798|gb|EEB60350.1| DNA helicase II [Pseudomonas syringae pv. tomato T1] gi|330878141|gb|EGH12290.1| DNA-dependent helicase II [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964448|gb|EGH64708.1| DNA-dependent helicase II [Pseudomonas syringae pv. actinidiae str. M302091] Length = 727 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 193/592 (32%), Gaps = 116/592 (19%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + S LT K + YE A ++ V+DF +L++ DL + + Sbjct: 154 EGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRDNPG---LLA 210 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + H+L+DE QDT+ +Q+ +R L + +L VGD+ QSIY + G Sbjct: 211 HYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDDDQSIYGWRG 260 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + + +I L ++RSTA IL + + G Sbjct: 261 AKIENIHQYSDDFP--------DTEVIRLEQNYRSTASILKAANGLIINNSGRLGK---- 308 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + + + F+ + AR + Sbjct: 309 -----------------ELW-------TDVGDGELINLYAAFNEHDE-------ARYVVE 337 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 TI + + T I DI +L R + ++ +I Sbjct: 338 TIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERIPYRIYGGQR 383 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I RH +++E + Sbjct: 384 FFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARHADVSMWEAM 443 Query: 471 Q------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + I+ I L H ++ +Q Sbjct: 444 RLLVANKGLTGRAAGALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLITYHEQEKGEK 503 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + L L + L + + +++MT+H+ Sbjct: 504 GQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHEDSIQLMTLHS 563 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P VFLV +F HK + Sbjct: 564 AKGLEFPHVFLVGMEEGLFPHKMSLEEPG------------------------------- 592 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA QL++ V + Sbjct: 593 ---RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPA 641 >gi|163758971|ref|ZP_02166057.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43] gi|162283375|gb|EDQ33660.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43] Length = 840 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 109/635 (17%), Positives = 191/635 (30%), Gaps = 114/635 (17%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + +DF DL+ L + + + Q+ IL+DE QDT+ Sbjct: 223 RVLYTAYQERLQTLNAVDFGDLLCLPIRLFRANPD---VLKEYQQKFRFILVDEYQDTNT 279 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + VGD+ QSIY + GAE + +LR ++ Sbjct: 280 AQYMWLRLLAQRPT------GERPNICCVGDDDQSIYGWRGAEVENILRFEKDFP----- 328 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I L ++RST IL + S E G + + Sbjct: 329 ---GAKVIRLERNYRSTEHILGAAGHLISHNEGRLGKTLFT------------------- 366 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 S + ++ + +DS + AR I I +N Sbjct: 367 -------EQSDPDHERVMVHAAWDSEEE-------ARAIGEEIEQAQIKGRALNN----- 407 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +LVR L ++ + L I+D MA R + Sbjct: 408 -----MAILVRASFQMREFEERFVTL----GLNYRVIGGPRFYERLEIRDAMAFFRVVCQ 458 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ------H 483 DDL+F ++ P E + ++ R + E + K + Sbjct: 459 PADDLAFERIVNVPKRGLGEAAVRQVHDVARGRGVPMLEAARDLILTDEMKARPRKSLTD 518 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 V++ + + H+ IL + + + + ++ L E + E Sbjct: 519 VVEMFTRWQSMLENTPGHELAETILEESGYTEMWQNDRSADAPTRLENLKELVETISGFE 578 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + LE + ++ + + V IMT+H+AKGLE VFL +F H Sbjct: 579 S--------MRAFLEHVALVMDTDNNPDLDAVSIMTLHSAKGLEFETVFLPGWEEGLFPH 630 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + +S EE RL YVG+TRA Sbjct: 631 QR--------------------------------ALDEGGRSGLEEERRLAYVGLTRAKL 658 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 I SN + + V ++ H Sbjct: 659 FCHIWFVSNRRIHGLWQSTLPSRFLDELPEAHVEVAEMDTGYGGYGRGGRFGASGGGHSG 718 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + N + Sbjct: 719 GPYGASRFDKAEPFAGNYNTPGWKRAQANKTDAAR 753 >gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12] gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12] Length = 723 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 105/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + +S + + + Y+E + ++DF +L++ ++LL+ + Sbjct: 149 RRPEHIQPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPA---LLTH 205 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 ILIDE QDT+ IQ+ +R L + +FAVGD+ Q+IY + GA Sbjct: 206 YRSRFREILIDEFQDTNAIQYAFVRVLA----------NDTGHIFAVGDDDQAIYGWRGA 255 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V + I L ++RS+A+IL + + + + G Sbjct: 256 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 303 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + ++ + + AR I Sbjct: 304 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 332 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + +I VL R + + + I Sbjct: 333 ARQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSE----HIPYRVYGGMRF 378 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IKD +A R + ++ DD +F ++ +P+ E + ++ R + +++ Sbjct: 379 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 438 Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 + + + +L + +L + RQ + Sbjct: 439 ACTQSTTLTARARNALASFLNLLQQLAVETNQMGLAERIDHMLQRSELRQHWKKEARGSL 498 Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575 + LDE ++ R + EL + L A V++M Sbjct: 499 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQVQAGEEGVQLM 558 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P+VFLV + +F Sbjct: 559 TLHSAKGLEFPLVFLVGLENGLFPS----------------------------------A 584 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + EE RL YVG+TRA +LI+ K N + + N Sbjct: 585 RSLDEHDRLEEERRLAYVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQNLLHE 644 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + + S + + P+ Sbjct: 645 VRPTIQVSHQTPLGAVQRPAHDERDAAPI 673 >gi|325294300|ref|YP_004280814.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064748|gb|ADY72755.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 705 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 102/552 (18%), Positives = 182/552 (32%), Gaps = 115/552 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 K + Y + K+N DF+DL+I +LLK + ++ K ++LIDE QDT+ Sbjct: 164 KDIFEIYNKRLKENNAFDFDDLLIYGRELLKSEE----LQRKYSDFFQYVLIDEYQDTNR 219 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+E+ R+LT+D + VGDE Q IY++ GA + +L ++ Q Sbjct: 220 IQYEIARALTKD----------KGNICVVGDEDQCIYTWRGANIENILSFEKDFQN---- 265 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 II+L ++R T IL + V + +G Sbjct: 266 ----AKIIKLEKNYRCTKVILDAANAVIENNKLRKGKKLY-------------------- 301 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + S AR ++ T+ + Sbjct: 302 --------TDNPAGEPIRLYVA-------ESDVDEARFVSKTVKQFLKKG---------- 336 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ DI + R + ++ R IS + IKD++A R +L Sbjct: 337 VKPADIAIFYRTNSQSRVVEDALR----REGISYKIVGGLKFYERKEIKDIIAYLRVVLF 392 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-----GISKFQHVI 485 ++D +S + +L P K+ + + ++ ++ + +I Sbjct: 393 EKDTISLLRILNVPKRGLGSAVEKKLKEILQQETSNIGALKLLSDELRMEKQKKAIEDLI 452 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541 + E+ P+D I + + + + + E N E+ Sbjct: 453 DIVEEIRKKLYNLKPYDLIKFITVSIGYEKYLRKEHPEDWESRVENIKELGNTIQEFSER 512 Query: 542 NSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L + + +V +MTVH +KGLE P+VF+ +F H Sbjct: 513 EKLQGEDLYLEFLSTITLSSDQDELDEEDEKVTLMTVHASKGLEFPIVFITGLEEGLFPH 572 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + K EE RL YV +TRA Sbjct: 573 ----------------------------------IKSLDTKEEIEEERRLFYVAITRAKR 598 Query: 661 QLIICKHSNTSN 672 L + + Sbjct: 599 LLSLSYAKKRRS 610 >gi|126172693|ref|YP_001048842.1| DNA-dependent helicase II [Shewanella baltica OS155] gi|217974967|ref|YP_002359718.1| DNA-dependent helicase II [Shewanella baltica OS223] gi|125995898|gb|ABN59973.1| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155] gi|217500102|gb|ACK48295.1| DNA helicase II [Shewanella baltica OS223] Length = 722 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 96/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQDRFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I +++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKD 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R T+++ + A + + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I + Q + ++ A + + + G + + L+E + E Sbjct: 463 DLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNGFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|153009094|ref|YP_001370309.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188] gi|151560982|gb|ABS14480.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188] Length = 864 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 115/700 (16%), Positives = 197/700 (28%), Gaps = 157/700 (22%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTEDFFVGKNTH-----------------------------------SSPRT 215 Q+ +R L + S+ Sbjct: 269 AQYLWLRLLAQRPQTRNTAPAPIPTEGRQARPGVAPDGAPPRSEPRSGDSVSANKSAQVN 328 Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275 L VGD+ QSIY + GAE +LR ++ +I+L ++RSTA IL Sbjct: 329 LCCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGAAA 380 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 + + E G + + + + + +DS Sbjct: 381 HLIAHNEGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDS 414 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 + AR + I + +N + +LVR Sbjct: 415 EEE-------ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVT 457 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 L ++ + L I+D MA R + DDL+ ++ +P E I + Sbjct: 458 L----GLNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQ 513 Query: 456 IC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508 I R +++ + S + V++ + + IL Sbjct: 514 IHDYARARDISMFSAACDLIETEELKPKPRSALREVVENFLRWQSLIDNTPHTELAETIL 573 Query: 509 GAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565 + + E ++ L E + E L LE + Sbjct: 574 DESGYTAMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQ 625 Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625 + + + V IMT+H+AKGLE VFL +F H+ Sbjct: 626 NEDLDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------- 662 Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685 + +S EE RL YVG+TRA L I SN Sbjct: 663 ---------ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR-------------- 699 Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745 + E E + + Sbjct: 700 IHGMWQSTIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQR 759 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 +N + S +K + RG I Sbjct: 760 AQQNRSDATRNNWGSRSGSKVERIGYGETDSGFGAGRGSI 799 >gi|71734750|ref|YP_277224.1| DNA-dependent helicase II [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555303|gb|AAZ34514.1| DNA helicase II [Pseudomonas syringae pv. phaseolicola 1448A] Length = 727 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 120/661 (18%), Positives = 216/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L A H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKAMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|88861280|ref|ZP_01135912.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2] gi|88816761|gb|EAR26584.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2] Length = 721 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 97/582 (16%), Positives = 196/582 (33%), Gaps = 121/582 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++A + ++DF ++++ +LLK + Q H+L+DE QDT+ IQ Sbjct: 172 VYTAYQDACDRAGLVDFAEILLRCYELLKNSPT---LLRHYQQRFPHMLVDEFQDTNTIQ 228 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + ++ + + + VGD+ QSIY + GA+ + + R Sbjct: 229 YAWLKLIAG----------TGGNVMIVGDDDQSIYGWRGAKIENIRRFLTDF-------- 270 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST+ ILT + + + G S LW Sbjct: 271 -DAQTIRLEQNYRSTSTILTAANALIANNSERMGKS---------------------LW- 307 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S + ++ L + AR I I + Sbjct: 308 ------TEGSEGDPISIYAAYNELDE-------ARFIVGKIKTWLNAGNAL--------- 345 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +D +L R + ++ + + IKD ++ R + +++ Sbjct: 346 -QDAAILYRNNAQSRILEEAL----LQEGLKYRIYGGMRFFERQEIKDALSYLRLVSNRQ 400 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHVI 485 DD +F ++ +P E + I R+E+ ++ + + I Sbjct: 401 DDAAFERVINTPTRGIGERTLSLIRDCARNESIPLWYAAKALIEHKHLTGRAANAVNSFI 460 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-- 540 + I ++ ++ + + + + G + ++ L+E +N + E Sbjct: 461 ELIEKVEKVSIDLPLEEQAKQAIHTSGLMAMYQAEKGEKGQARVENLEELINACSQFELP 520 Query: 541 -QNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + ++S L +S + + V++MT+H+AKGLE P+VF+ +F Sbjct: 521 NEEEFASPLTGFLSYTALESGE--GQAEEHEDAVQMMTLHSAKGLEFPLVFMAGVEEGMF 578 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + EE RL YVGMTRA Sbjct: 579 PSQQSN----------------------------------EESGRLEEERRLCYVGMTRA 604 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 ++L I + + + + +I+ Sbjct: 605 MEKLYISHAETRRLYGQEKYHSPSRFLREIPEACVEEIRIRT 646 >gi|255321476|ref|ZP_05362634.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277] gi|255301332|gb|EET80591.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277] Length = 694 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 95/543 (17%), Positives = 188/543 (34%), Gaps = 118/543 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + YEE N ++DF+DL+ + +L + + + +I + ++++DE QDT+ Sbjct: 173 LANIYKLYEEYLAANNLVDFDDLLCLSYKILDEDEA---LAREISRRYAYVMVDEYQDTN 229 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 +Q+ ++R L + + VGD+ QSIY + GA+ + +L K Sbjct: 230 DLQYRLLRKLCL----------THENIAVVGDDDQSIYGWRGAKIENILNFKDQF----- 274 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + +I L ++RST+ IL +++ N G ST Sbjct: 275 ---KDAKVIRLEQNYRSTSQILRAANELIDHNRNRLGKELKSTK---------------- 315 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 + + D + ++A I ++ + Sbjct: 316 ------------EGGEDVALMESDDETMESL-------KVAKRIKKLLDSG--------- 347 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 QA DI +L R + + K I + +KD+++ R + Sbjct: 348 -AQASDIAILYRINALSRSLEEGLTKEK----IPYKMVGGVKFYERAEVKDVISYLRLVA 402 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYI 488 ++ DD S ++ P + + KI +++E I + ++ + Sbjct: 403 NENDDFSLKRVINRPKRGLGKVSLAKIEKIAFEHKFSLFEAISSLDENDKDLSKKIVSSL 462 Query: 489 HE----LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543 E L + + SP++ + ++ + S G+E + +DEF + + Sbjct: 463 GEFAANLRELKECDSPYELVDKLEAKFGIKKYYESLPDGSERVANIDEFYATIKDQIRQN 522 Query: 544 YS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 S S++E ++E+ + IM++H +KGLE +F++ F Sbjct: 523 PSFSIEEFLNEIALQSEQDNI----GGEAISIMSIHASKGLEFEHLFVIGLEEGFFPLLG 578 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 EE RL YV +TRA L Sbjct: 579 DGS-------------------------------------DIEEERRLAYVAITRAKKTL 601 Query: 663 IIC 665 + Sbjct: 602 TLS 604 >gi|256024679|ref|ZP_05438544.1| exonuclease V subunit beta [Escherichia sp. 4_1_40B] gi|301645213|ref|ZP_07245166.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 146-1] gi|307139504|ref|ZP_07498860.1| exonuclease V subunit beta [Escherichia coli H736] gi|301076483|gb|EFK91289.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 146-1] Length = 1180 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|148828339|ref|YP_001293092.1| DNA-dependent helicase II [Haemophilus influenzae PittGG] gi|148719581|gb|ABR00709.1| DNA helicase II [Haemophilus influenzae PittGG] Length = 726 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YKWIKILAG----------KTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGNRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|296270932|ref|YP_003653564.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] gi|296093719|gb|ADG89671.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] Length = 1128 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 140/1074 (13%), Positives = 289/1074 (26%), Gaps = 155/1074 (14%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 + + + P + + T L+ A + Sbjct: 84 AELAERVRKRLGQLAASGLIPPELLDHEPAVSTYHAYAARLFTDHALRDGLEPAMRLATP 143 Query: 63 EERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 + L + K ++ + +L +L + E +R + Sbjct: 144 AVAWQLAAQVVGQYDGPMDKVDLTPPSVTAAVLELAGELAEHLCEPDDVRGFGRWLRDRF 203 Query: 122 STLASLTLAKY---------------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + L +A L Y+ K++ +LD D + + + Sbjct: 204 AELPGKPIAAQRKVIERQEVREQLLPLVEAYQRLKRERGLLDHGDQVALAARIALRHPEV 263 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + +L+DE QDTS Q E++R+L + AVGD QSI Sbjct: 264 GAV---ERGRYAVVLLDEYQDTSHAQLELLRALYG----------GGHPVTAVGDPCQSI 310 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA +LR R G+ + L +SFR+ +L V + + Sbjct: 311 YGWRGASAGNLLRFPGHFPTR---TGEPAPVKCLSVSFRNGERVLGVA----ARIQEPLR 363 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + +R G+ G V ++ +++ + S+ +A Sbjct: 364 AEAREVPVLTPGPNRRGR-GRVVCAFHRTAEEEAEWIAGLVDGLLRGEGAAAAGSSLGVA 422 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + + + + KDI +LVRKR R D I V Sbjct: 423 VPREGAPDGLPWPEGERDPDRP-AVSPKDIAILVRKRSQFA----ALRRALEDRGIPVEV 477 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF-----------K 455 L + D++A R + + + +L P + D+ + Sbjct: 478 VGLGGLLMVPEVADIVATLRALYDPTAGDALLRLLAGPRWRIGPADLKTLGDLARELTKE 537 Query: 456 ICTQRHETETVYEYIQKFANCG------------------------ISKFQHVIKYIHEL 491 + R E + + + + A + + + L Sbjct: 538 LREGRREGDPLENAVAELAEEQGNLIDALDELPDRPDWLARFSPRARERLPALALELRAL 597 Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNFTLRNE-QNSYSSLQ 548 A + + + + ++ GN LD FL+ R ++ +L Sbjct: 598 RAHAGR-PLPELIGEVERRLRLDIEVAAKGGNPLAARADLDAFLDIAARFAGESEDGTLG 656 Query: 549 ELISELEQYPPTIKR------AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 ++ L+ + V++MTVH AKGLE PVV + Sbjct: 657 AFLAYLKAAETEEFGLKTAEAGQVGETDTVKLMTVHMAKGLEWPVVIVPGLSQATTQKGW 716 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRN----------------NIVSDLIKHLKKSTQEE 646 + K + P+ P+ + ++ + + E Sbjct: 717 VTKGSLFPAAPVTNPRWTENPRKLPYPLRGDRTDLPRLPSLERDALTAFEEDCRTRDLLE 776 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA L+ ++ + + + + R + Sbjct: 777 ERRLAYVAVTRAHYLLVASGFRWGTSSRPLEPSMFLEEIRAKGAEVARWWDGDEEENPLL 836 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 + +W + E +++ + + + E D G Sbjct: 837 ADPPRADWPQVGVPDPVREGARLVEEALAARAEQDAAGAERDAAEAERDTAGAVFADPVG 896 Query: 767 KTNLESLLSDNQTFNRGLII---------HKLLQVIF----------------------- 794 + + + R + H+ QV+ Sbjct: 897 DLS-PEDRERMRAWARDTELLLRERAEHHHRAGQVVELPDRLTVSSLVTLAADPVAFAQS 955 Query: 795 --------TLPEHKRKNFITSYCTK---NAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843 P +R + +L + + + + Sbjct: 956 VRRPLPRKPAPHARRGTAFHRWLETRWGQQRLLDESDLPGAADEQSGDADLAELQELFER 1015 Query: 844 DSYS---EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900 ++ V D ++ GR+D + + +++T E Sbjct: 1016 SEWARRTPVDQEVPFQMVIGDRLVRGRMDAVFREGDGYVVVDWRTGRRPQGEEAEAAAVQ 1075 Query: 901 IAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 +A Y P + + YV + + +IP Sbjct: 1076 LA---AYRLAWSALAGVPLEKVSAAFHYVRYNETHRPVDLLDAAGLTALIERIP 1126 >gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23] gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23] Length = 723 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 104/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + +S + + + Y+E + ++DF +L++ ++LL+ + Sbjct: 149 RRPEHIQPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPA---LLTH 205 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 ILIDE QDT+ IQ+ +R L + +FAVGD+ Q+IY + GA Sbjct: 206 YRSRFREILIDEFQDTNAIQYAFVRVLA----------NDTGHIFAVGDDDQAIYGWRGA 255 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V + I L ++RS+A+IL + + + + G Sbjct: 256 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 303 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + ++ + + AR I Sbjct: 304 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 332 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + +I VL R + + + I Sbjct: 333 ARQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSE----HIPYRVYGGMRF 378 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IKD +A R + ++ DD +F ++ +P+ E + ++ R + +++ Sbjct: 379 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 438 Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 + + + +L + +L + RQ + Sbjct: 439 ACTQSTTLTARARNALASFLNLLQQLAVETNQMGLAERIDHMLQRSELRQHWKKEARGSL 498 Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575 + LDE ++ R + EL + L A V++M Sbjct: 499 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQVQAGEEGVQLM 558 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P+VFLV + +F Sbjct: 559 TLHSAKGLEFPLVFLVGLENGLFPS----------------------------------A 584 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + EE RL YVG+TRA +LI+ K N + + + Sbjct: 585 RSLDEHGRLEEERRLAYVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQDLLHE 644 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + + S + + P+ Sbjct: 645 VRPTIQVSHQPPLGATQRPAHDERDAAPI 673 >gi|251789629|ref|YP_003004350.1| exodeoxyribonuclease V subunit beta [Dickeya zeae Ech1591] gi|247538250|gb|ACT06871.1| exodeoxyribonuclease V, beta subunit [Dickeya zeae Ech1591] Length = 1224 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 135/1051 (12%), Positives = 287/1051 (27%), Gaps = 167/1051 (15%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 F ++ +E + P P + + + + +A+ + + Sbjct: 224 FSVARDEKTRRLAALKAPWPQWCGELRDVLHTAVAQKKADGRKLQARYFEAWL------D 277 Query: 65 RFSLLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 + ++ T T + Q + + +E + ++ + + Sbjct: 278 KLHHWATSDETTLDIGTGWMRLTPQGLRECWKVPEEAPQHPALTAMETLAQQLSELPEPR 337 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 + ++++ + ++ + F+DL+ + L+ D + +I ++ +I Sbjct: 338 SRLLRHACRWVSQRFRHEQESRAQMGFQDLLTRLDAALRG-DNGERLAQRIRRQFPLAMI 396 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT +Q+ + +L + + + L +GD KQ+IY+F GA+ LR +R Sbjct: 397 DEFQDTDPLQYRIFDTLYQ-----VADNDPQQGLILIGDPKQAIYAFRGADIYTYLRARR 451 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG-------LSEDSTTTI 295 L +FRST ++ V++VF EN D + Sbjct: 452 D---------TDGRHYTLGTNFRSTQAMVDAVNQVFMQAENRADGAGAFLFRQPDGDNPV 502 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTIS 354 + G ++W + WT D + +A A + Sbjct: 503 PFLPVQAN--GRDEVW-----MQEGSTAAALTCWTLETDEPVSSAEYRQRMAAGCAREMV 555 Query: 355 NMIG------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 ++ R ++ D+ VLV ++ + SV +D Sbjct: 556 RLLQLGVQGLAGFAAPGQALRPVRPGDMAVLVNTGREAMAVRAQLSA---RGVRSVYLSD 612 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 R + D +L E+D L +PL S + + E Sbjct: 613 RESVFDSPQAGELRCWLAACADPENDRLLRAALATPLLGLSWQALDCLNHDERE------ 666 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID- 527 + + Y + +L A ++ ++ + Sbjct: 667 --------WERRVMQFVGYQNCWRQQ----GVLPMLRRLLWAFDVPRRLLAADNARALTD 714 Query: 528 --VLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582 L E L L E L E T+K ++ + V+++TVH +KG Sbjct: 715 VLHLSELLQQASVHLDGEHALIRYLAEQCQAENPGGDTLKLRLESDADRVKVVTVHKSKG 774 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE P+VFL + + ++ Sbjct: 775 LEYPLVFLPFACAFRAVSPRDIPLKFHDDDGQPRLEL----------TASDAAVQRADHE 824 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-----------QRTWYDMVYDSFHN 691 E R YV +TRA L + EK + + Sbjct: 825 RLGEDLRKFYVALTRARYALWLGIAPLKELEKSAPGYLLGVGEPLAPGQLTQQLSVWCGA 884 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET----------IKQLMDEQKIPK 741 + + T+ A P + R + + + Sbjct: 885 HSQRVPLPETDEARYRAVQASPSLGQEPPLPDIRRHRWRITSYSGLQRAPEGQFQAQRES 944 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS---DNQTFNRGLIIHKLLQVIFTLP- 797 + + + L + + G +H LL+ Sbjct: 945 SENEAAEVQSARQETFSEPQDVAERLPPLPTGYDMYGFPRGAVPGSFLHGLLEWAGETGF 1004 Query: 798 ---EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----------MTTAMSC 843 R + + L + LL P+ + Sbjct: 1005 AALAADRDRVEDQVARRCNRQGWTPWIPMLTDWLMALLRQPLTLPGSSGGAVSLAGLTQY 1064 Query: 844 DSYSEVSVS-----------------------GKINCPKKDIIISGRIDQISISQQNIFI 880 E + + + + ++ G ID + Q ++ Sbjct: 1065 QVEMEFWFALNQVDTQALDNQVRAATLAGEPRATLMREQLNGMLKGFIDLVFEHQGRYYV 1124 Query: 881 FEYKTHHHVPQEIE---------HIPYTHIAQLSIYEKILKDSYP--------NKSLVCL 923 +YK++ + + + + QL++Y L ++ + Sbjct: 1125 LDYKSNWLGANAADYDGLRMAHAMLEHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGA 1184 Query: 924 LI-YVS------EPKVFIIPQNKLNKAFAEI 947 L ++ P L +A + Sbjct: 1185 LYLFLRGSQASGGGVYAERPDRSLIEALDRL 1215 >gi|313812634|gb|EFS50348.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1] Length = 1072 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 149/995 (14%), Positives = 299/995 (30%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + + A + TI + D +L Sbjct: 391 GQPLIAPEGNRRGEVTVAAYPDWAKECQTCADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + D LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTSDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + I Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADALLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFYHVGANETISAEPLLDADQVAAILTA 1058 >gi|309785129|ref|ZP_07679760.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1617] gi|308926249|gb|EFP71725.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1617] Length = 860 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 125/861 (14%), Positives = 276/861 (32%), Gaps = 133/861 (15%) Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 L + K++ L F+D++ + L+ + + I + Sbjct: 4 RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAM 62 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 IDE QDT Q+ + R + H L +GD KQ+IY+F GA+ ++ + Sbjct: 63 IDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKAR 114 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 T L ++RS ++ V+K+FS ++A E ++ Sbjct: 115 SEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKN 164 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + + P + W +S S +A+ A I + + Sbjct: 165 QA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQ 214 Query: 362 -----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + + R ++A DI VLVR R++ + L+ SV ++R + + L Sbjct: 215 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETL 271 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 ++++ L + +++ E + + L + + + DI + + E ++ + + + Sbjct: 272 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL----NNDEHAWDAVVEEFDG 327 Query: 477 GISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534 ++ V+ + L S + +L G ++ + E L Sbjct: 328 YRQIWRKRGVMPMLRAL------MSARNIAENLLATAGGERRLTDIL------HISELLQ 375 Query: 535 FT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 L +E L + I E + + + ++ + V+I+T+H +KGLE P+V+L Sbjct: 376 EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 435 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 + + ++ N + + + E RLL Sbjct: 436 FITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLL 482 Query: 652 YVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 YV +TR+ L + +KK + + E L I Sbjct: 483 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 542 Query: 710 IAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINE 753 W T + + E + + + D+ Sbjct: 543 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP 602 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813 ++ + + + + + + + G +H L + + N++ Sbjct: 603 RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGG 661 Query: 814 KLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK-------- 859 + ++ L IT +L+ P+ ++ + + E+ I+ P Sbjct: 662 --FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 719 Query: 860 ------------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE------- 894 ++ G ID + + ++ +YK++ Sbjct: 720 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 779 Query: 895 --HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 780 AAMQAHRYDLQYQLYTLALHR 800 >gi|309973348|gb|ADO96549.1| DNA helicase II [Haemophilus influenzae R2846] Length = 727 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 106/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 N + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 NDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|226226951|ref|YP_002761057.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] gi|226090142|dbj|BAH38587.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] Length = 820 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 121/787 (15%), Positives = 227/787 (28%), Gaps = 133/787 (16%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E I K L P + M G ++ + Q + I Sbjct: 85 AAGEMRARIAKFLGHEPKGMWCGTFHALGARMLRGVAPLVGREQNFTIYDEDDAIGAVKR 144 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 ++ L+ K + I K L + RD F T Sbjct: 145 VMERRNLS-----PKEFAPKAILSAISSAKNALISPSEFARNARDTFATA---------- 189 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + E A ++ + F+DL++ L+ + +R + ++L+DE QD Sbjct: 190 --VAGVYTDLEVALQQANAVTFDDLLVLPVRALETDEA---LRAHYQRRFRYLLVDEYQD 244 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++ + R + VGD+ QSIY + GA+ + +L +R Sbjct: 245 TNAAQYRFVQLM----------GGGYRNVMVVGDDDQSIYGWRGADIRNILDFERDFP-- 292 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I+ L ++RST ++L + + V + +G + +T Sbjct: 293 ------GARIVRLEENYRSTPNVLALANAVIAENTERRGKTLRATRP------------- 333 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + D + A IA TI + Sbjct: 334 ---------------AGEAVTLIEALDERDE-------ADFIAETILTRMSRS------- 364 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +D +L R + I R I D I+DLMA + Sbjct: 365 --DLARRDCAILYRTNAQSRAIEDAFR----RRNIPYRLIGAVRFYDRREIRDLMAYLKL 418 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISK 480 + + DD +F + P + I + Q E T ++ + + Sbjct: 419 VANPADDEAFRRAVNVPKRGLGDATIALLAEQAIAEGKPMLEMATRFDVLSGMRPAARAA 478 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538 + + L +A + + ++ K + G E I+ + E + Sbjct: 479 LEDFGNLVQRLRTMAVDAAVDELLRELVQVIKYADHLRAEGPEGLERIENVREMIAGAAE 538 Query: 539 --NEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 ++ L L L+ N + V MT+H AKGLE P+VF+ Sbjct: 539 VVADEGGEVGLTPLDHFLQSSTLVAGVDKLDPNADAVTCMTMHNAKGLEFPLVFVCGLED 598 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + EE RL YVG+ Sbjct: 599 GLFP----------------------------------LARAAEDPAQLEEERRLFYVGI 624 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA ++L + + + + K S + + Y Sbjct: 625 TRAEEKLYLTCAEQRRRNGELMYSMPSRFLEVIKPSLAERGKTARAKSEGRSGFGGYGSG 684 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775 + K+ P + P + ++ ++ Sbjct: 685 YGSRRGNDDGWGRSGNSAGAGTGGAKRSVGPYGSAGYRPSG-SGVGANSGDIPFGKAPGG 743 Query: 776 DNQTFNR 782 + R Sbjct: 744 FSTPARR 750 >gi|116253019|ref|YP_768857.1| ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae 3841] gi|115257667|emb|CAK08764.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 829 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 111/669 (16%), Positives = 206/669 (30%), Gaps = 113/669 (16%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ DF DL+++ + +K + + +IL+DE QDT+ Sbjct: 226 RDLYFAYQARLTTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 282 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + P+ + VGD+ QSIY + GAE +LR ++ Sbjct: 283 AQYMWLRLLAQRP------KGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 331 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + E G + + Sbjct: 332 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR----------------- 371 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 S + + + +DS + AR I I + + Sbjct: 372 ---------SDPDDVKVQVHASWDSEEE-------ARAIGEEIEQLQRGKHLL------- 408 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D+ +LVR L ++ + L I+D MA R + Sbjct: 409 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQ 461 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + + + R + + Sbjct: 462 ASDDLAFERIVNTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD 521 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 VI+ + + + IL + + E L+ E Sbjct: 522 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 578 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 S + + LE + + N + V IMT+H+AKGLE VFL +F H+ Sbjct: 579 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 636 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL YVG+TRA + Sbjct: 637 LD--------------------------------ESGRAGLEEERRLAYVGITRAKHRCH 664 Query: 664 ICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 I SN + + + D + ++ +++ ++ + Sbjct: 665 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN 724 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQT 779 + + + + Y + P +G+ +S S+ Sbjct: 725 SYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIEGELVAKSTSSEPSR 784 Query: 780 FNRG-LIIH 787 F G + H Sbjct: 785 FALGDRVFH 793 >gi|237740038|ref|ZP_04570519.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31] gi|229422055|gb|EEO37102.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31] Length = 735 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 105/545 (19%), Positives = 183/545 (33%), Gaps = 117/545 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y + ++ +DF D+++NT LL+ I KI ++ +I+IDE QDT+ + Sbjct: 167 EVYEKYNRSLIESNAMDFSDILLNTYKLLQNSS----ILEKIQKKYKYIMIDEYQDTNNL 222 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I + L VGDE QSIY F GA +L + + Sbjct: 223 QYKIIDLIAR----------KSANLCVVGDENQSIYGFRGANILNILNFENNYKN----- 267 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++RST+ IL +++ ++++ LW Sbjct: 268 ---AKIIKLEENYRSTSTILDAANELIKNNKSSKDKR---------------------LW 303 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ + S +I I I Sbjct: 304 -------TQNGKGDLIKVLVCDNARDEVS-------KIIDIIKENHQNG----------I 339 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 KD+ +L R + + Y I IKD++A I++ Sbjct: 340 PYKDMTILYRTNMQSRVFEEGL----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 395 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 +D+L+ ++ P E I KI R + + + G K + Sbjct: 396 QDELNLQRIVNVPKRKVGEKGIEKIIAFARENNLNLLDALSHIKDISGLTATGKEKLSEM 455 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542 I EL ++ + +L K + I+ ++EF N L E Sbjct: 456 YDIIKELKDLSYSETASYIVETLLDKIKYIDYVKETYDDADARIENIEEFKNSILELE-- 513 Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + + L LE + +++MT+H +KGLE P+VFLV +++F Sbjct: 514 NVVGVLRLSEYLENVSLVSATDDLEDEKDYIKLMTIHNSKGLEFPIVFLVGFENEIFPG- 572 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA + Sbjct: 573 ---------------------------------ARASFDEKEMEEERRLCYVALTRAEKK 599 Query: 662 LIICK 666 L + Sbjct: 600 LYLSH 604 >gi|145631236|ref|ZP_01787009.1| DNA helicase II [Haemophilus influenzae R3021] gi|144983163|gb|EDJ90658.1| DNA helicase II [Haemophilus influenzae R3021] Length = 726 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFK 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|291556400|emb|CBL33517.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum V10Sc8a] Length = 792 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 92/551 (16%), Positives = 173/551 (31%), Gaps = 116/551 (21%) Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L+ AK + Y+ + LDF+D+I+ T L + +I++DE Q Sbjct: 224 LSTAKTIYTDYQARLEAANALDFDDIIMLTVKLFAH---CPDVLSHWQNRFKYIMVDEYQ 280 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q++++ L E L VGDE QSIY F GA + +L + Sbjct: 281 DTNAAQYKLVSLLAE----------GSGNLCVVGDEDQSIYRFRGATIENILSFEEQFG- 329 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +I+L ++RSTA IL + V + + + Sbjct: 330 --------AEVIKLEQNYRSTATILKAANAVIANNTQHKDKN------------------ 363 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + + + S+ A I I + + Sbjct: 364 ---LWSDLGDGDKIRMD--------------RFSTEQEEAMFITERILDGVKQGK----- 401 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D ++L R + + I + IKD++A Sbjct: 402 -----KYADHVILYRNNAQSRTVETTL----AKSGIPYKIIGGVRFYERKEIKDIIAYLC 452 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISK 480 + + D++ F ++ P+ + ++ + + + + + Sbjct: 453 VLNNNYDEVRFGRIVNEPVRGIGAATLDELNRVVSGMGISYVQAMCESDSLPSLSRKAKV 512 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538 + + EL S IL R+ + G ++ ++E + + Sbjct: 513 LVPLGETFSELSQHTDDISDGSLIDDILDRFGYREAMQRQGLEGEVRLENINELKSNMIT 572 Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + + L E + ++ A+ ++ +MT+H+AKGLE VF+V + Sbjct: 573 FAKENEGAGLSEFLEQVALVSDMDSF--EADDDKAVLMTMHSAKGLEFDTVFVVGAEENI 630 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F EE RL YV +TR Sbjct: 631 FPG----------------------------------YRSQFDPMEIEEERRLAYVAITR 656 Query: 658 ASDQLIICKHS 668 A L Sbjct: 657 AKRHLYFTCAK 667 >gi|291288294|ref|YP_003505110.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809] gi|290885454|gb|ADD69154.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809] Length = 703 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 104/660 (15%), Positives = 207/660 (31%), Gaps = 136/660 (20%) Query: 37 LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-- 94 L++ N + + + + + + S L +++ + Sbjct: 56 LAVTFTNKAAGEMKERILKLVDYEDADIWIGTFHSICL---RLLRRDPEKAGLEPGFGIL 112 Query: 95 DLKEKLKKSQDEFIKI---------RDRFNTYKMFKSTLA---------SLTLAKYLNAH 136 D ++L +D + + NT +K+T L + + A Sbjct: 113 DQDDRLATIRDIIKNLNIDHKKYPPKKYMNTISTYKNTRPYVDGKKPEELLHMFADVFAA 172 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y++ K ++DF+D++ T + K + ++ +IL+DE QDT+ IQ+ + Sbjct: 173 YQQRLKDQKLVDFDDMLALTIRMFKNHPDTVGYYKEL---FRYILVDEYQDTNDIQFLFL 229 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 L L VGD+ QSIY + GA+ + +L I + Sbjct: 230 HLLAGLD----------GNLCVVGDDDQSIYGWRGADIRNILEFDTIF--------KGTK 271 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 II L ++RS IL +K+ + +G + + G VQ+ Sbjct: 272 IIRLLENYRSRPQILQAANKLIRNNKLRKGKDLVAAR---------DEGGLVQVLPVSRE 322 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 + A + ++ + ++ +I Sbjct: 323 TDE--------------------------AEFVIDQVNKYLEEG----------VKGSEI 346 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 +L R + L N ++ IKD+++ R + D +S Sbjct: 347 AILYRTNGQSRNFEV----LLNRQGVAYKVIGSVGFYQRREIKDILSYLRLFDNPYDSVS 402 Query: 437 FVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQH-VIKYIHELIHI 494 F +K+P + I KI ++ E + + + Y+ + Sbjct: 403 FRRSVKAPPRGIGDTTINKITDYASGNGISILEAVYAMNDQLRGAQKESFRGYLKIFNEL 462 Query: 495 AQFCSPHDFFTLIL---GAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQEL 550 A + ++ +++ E ++E N + E ++ ++ + Sbjct: 463 AACLKVSEMVKTVMDMTDYSGYVKRYEDEQEAERRISNIEELYNAAVSFENSNSDAM--I 520 Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 L A+ V++MT+H+AKGLE VFL + +F + Sbjct: 521 TDFLAATAIATSSDEPADS-CVQLMTIHSAKGLEFESVFLTGLENGLFPLHGSLEEPDEL 579 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 RL YVG+TRA L + S Sbjct: 580 EEE----------------------------------RRLCYVGVTRAKQNLHMTYASTR 605 >gi|225075883|ref|ZP_03719082.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens NRL30031/H210] gi|224952829|gb|EEG34038.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens NRL30031/H210] Length = 666 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 109/611 (17%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEDVVQTASNVWEQQTARVYASYQETLQSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQ----------------- 315 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 S A + I ++G D Q D VL R + Sbjct: 316 ------SEQHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R ++ + D IKD+++ R + + DD +F+ + +P + Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q + Q + I A+ + Sbjct: 417 LGKLNTYAHEHECSLYEAAQTEEALALLNHTNRQYLQAFMDMIESYRAKAETSEAGELIH 476 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + + + R + ++ EL + Sbjct: 477 NLLKEIDYENHLLDNEEGKAGEIKWRNVTDLTGWLERKGEQDGKNIIELAQTIALMTLLE 536 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V++ T+H +KGLE P VFLV + H Sbjct: 537 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEP 620 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 621 SRFIDEMPQED 631 >gi|68171270|ref|ZP_00544672.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|88657941|ref|YP_507655.1| UvrD/Rep family helicase [Ehrlichia chaffeensis str. Arkansas] gi|67999317|gb|EAM85964.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|88599398|gb|ABD44867.1| helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas] Length = 639 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 106/550 (19%), Positives = 184/550 (33%), Gaps = 120/550 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 T+A Y+E K +DF DL++ + + + ++ +I++DE QD Sbjct: 166 TVALSTYHIYQERLKFLNCVDFGDLLLYNIQIFTTQH---NVLSHYQEQFKYIMVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 + IQ+ +R L + + + L VGD+ QSIYS+ GAE +L+ Sbjct: 223 INTIQYLWLRLLAQKY----------KNLCCVGDDDQSIYSWRGAEVGNILKFSDDFPN- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I+ L ++RST++IL V + + ++ G Sbjct: 272 -------AKIVRLECNYRSTSNILDVATAIINNNKSRLGKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + Q + W S A+ I I N+ Sbjct: 306 --LW---TTNEKGQKVNLMKFWDS-----------KAEAQYICEYIKNLHD--------- 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 Q + +LVR T + Y I D I+D++A + Sbjct: 341 ---YQFNETAILVRAGFQTRIFEEYF----IKYSIPYKIIGGTRFYDRQEIRDIIAYLKI 393 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480 ++ +D++F ++ P + + KI + T + + + Sbjct: 394 TVNPNNDIAFERIINKPKRHIGASTLNKIYLCAKQNNTYFLNAAKILISNNQLPDKASRS 453 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLR 538 +++ I S + +I + G I+ + E + L Sbjct: 454 LNNLLNKIDSWKESLSSDSISNTVKMIAYDSGYVDMLENEGENGLARIENIKELFSALLS 513 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + E + + T + + N N IMT+H AKGLE P+VFL VF Sbjct: 514 F-----NDVNEFLEHISLVTETD--SLNYNDNYTYIMTLHAAKGLEFPIVFLPGWEEGVF 566 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 H ++ EE RL YVG+TRA Sbjct: 567 PH--------------------------------EKSLQDRTGEALEEERRLAYVGITRA 594 Query: 659 SDQLIICKHS 668 +QL I + Sbjct: 595 REQLFISCVA 604 >gi|301026211|ref|ZP_07189677.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 196-1] gi|299879803|gb|EFI88014.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 196-1] Length = 1170 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 296 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 354 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 355 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 406 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 407 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 456 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 457 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 506 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 507 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 566 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 567 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 623 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 624 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 675 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 676 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 729 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 730 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 776 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 777 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 836 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 837 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 896 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 897 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 956 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 957 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1013 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1014 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1073 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1074 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1110 >gi|296105303|ref|YP_003615449.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059762|gb|ADF64500.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 720 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 100/579 (17%), Positives = 183/579 (31%), Gaps = 116/579 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ IQ Sbjct: 173 VYKAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNNIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 YAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------- 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST++IL+ + + G LW Sbjct: 273 -GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------LW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ L + AR + I Sbjct: 310 ------TDGVDGEPISIYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ------- 349 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +L R + ++ + + IKD ++ R I ++ Sbjct: 350 ---CAILYRSNAQSRVLEEAL----LQVSMPYRIYGGMRFFERQEIKDALSYLRLIANRN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + + + R T+++ ++ S Q + Sbjct: 403 DDAAFERVVNTPTRGIGDRTLDVVRQASRDRQLTLWQACRELLQEKALAGRAASALQRFL 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE-Q 541 + I L H ++ R + G I+ L+E + T + Sbjct: 463 ELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYN 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 EEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 583 QMSLDEGG----------------------------------RLEEERRLAYVGVTRAMQ 608 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + K + + +++ Sbjct: 609 KLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 647 >gi|292493733|ref|YP_003529172.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] gi|291582328|gb|ADE16785.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] Length = 715 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 105/684 (15%), Positives = 212/684 (30%), Gaps = 98/684 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + +S + + + + L Sbjct: 30 GAGSGKTRVLVHRIAWLIRSQGISPFSLLAVTFTNKAAGEMRGRIEELLGMPAGGMWMGT 89 Query: 66 FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L Q+ ++ + + ++ L+ + + R Sbjct: 90 FHGLAHRLLRTHWQEAQLPQDFQILDSEDQYRLIRRILQNLNLDETRWPPRQAQWFINGR 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + L + Y+ +++ ++DF +L++ ++L + + Sbjct: 150 KDEGLRPQHLEDDGNPYLRQQIRIYHSYQSHCERSGLVDFAELLLRAHELWRDHPA---L 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 HIL+DE QDT+ IQ+ +R L + LF VGD+ QSIY + Sbjct: 207 LGHYQNRFTHILVDEFQDTNAIQYAWLRLLAGN----------QGKLFIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + + + + L ++RST IL + V + G + Sbjct: 257 RGARIENIQQLTQDFPT--------VRTVRLEQNYRSTGTILAAANTVIAHNAQRLGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + F+ + A + Sbjct: 308 --------------------LW-------TDGEEGEPIQIYRAFNERDE-------AHFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + DI VL R + + + I + Sbjct: 334 VERIQAWQNQGE----------RRADIAVLYRSNAQSR----ILEAALVEAGIPYRVHGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IKD +A R + Q DD +F ++ +P E + ++ R ++++ Sbjct: 380 LRFFERAEIKDALAYLRLVAHQNDDSAFERVVNTPPRGIGERTLSQVREQARQAGLSLWQ 439 Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519 + + + Q + I + + + + L+L ++ S Sbjct: 440 AATQLINTRTLSPRSANALQKFHRLIEGMATAIKALTLPEKMELVLEQSGLFDHYRKDRS 499 Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 G +D L E +N + + SL+ L L + V++MT+H Sbjct: 500 EKGQSRLDNLKELINAASQF-KAEDPSLETLPEFLAHAALEAGDTQAEDREDCVQLMTLH 558 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 AKGLE P+VF+V +F I ++ Sbjct: 559 AAKGLEFPLVFIVGMEEGLFPSPQSLNEPRRLEEERRLCYVGMTRARYHLYLIHAEHRWL 618 Query: 639 LKKSTQEEYNRLLYVGMTRASDQL 662 + + +R LY T + +L Sbjct: 619 YGSESYPKPSRFLYEIPTELTHEL 642 >gi|152978934|ref|YP_001344563.1| DNA-dependent helicase II [Actinobacillus succinogenes 130Z] gi|150840657|gb|ABR74628.1| DNA helicase II [Actinobacillus succinogenes 130Z] Length = 731 Score = 278 bits (710), Expect = 4e-72, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 186/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF ++++ +L + + I + IL+DE QDT+ IQ Sbjct: 177 IYRIYQDTCNRAGLVDFAEILLRAYELFLHKPL---ILQNYQRRFGQILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +E IR L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YEWIRLLAG----------KTGNVMIVGDDDQSIYGWRGAQIENIQKFLDDFSQ------ 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL +++ S N G LW Sbjct: 278 --AQTIRLEQNYRSTGNILQAANQLISHNSNRLGK---------------------DLW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + A ++ I + Sbjct: 314 ------TEDDKGEPVGIYAAFNELDE-------ALFVSSQIKIWLEDGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + VL R + ++ +I + IKD +A R + ++ Sbjct: 353 --ECAVLYRSNSQSRVLEEAL----IRAQIPYRIYGGMRFFERQEIKDALAYLRLVNNRH 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P E + + R T+++ Q K A + + Sbjct: 407 DDAAFERVVNTPTRGIGERTLETLRQFTRERQITLWQATQIAIQENKLAGRAATALMRFV 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L + ++ Q + G + I+ L+E ++ + Sbjct: 467 ELINSLAQETEEMPLFAQTDFVIKHSGLYQMYEQEKGEKGEVRIENLEELVSAAREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + +L + L + H + V++MT+H+AKGLE P VF+V +F Sbjct: 527 EEADDMSDLTAFLTHASLEAGEEQAGPHQSCVQMMTLHSAKGLEFPRVFMVGVEEGIFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + EE RL YVG+TRA Sbjct: 587 ----------------------------------FMSLEEPGRLEEERRLAYVGVTRAKK 612 Query: 661 QLIICKHSNTS 671 +L IC + Sbjct: 613 KLTICYAESRR 623 >gi|330937394|gb|EGH41379.1| DNA-dependent helicase II [Pseudomonas syringae pv. pisi str. 1704B] Length = 727 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 119/661 (18%), Positives = 214/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKSAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|313792361|gb|EFS40460.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1] gi|313801691|gb|EFS42931.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2] gi|314962480|gb|EFT06580.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1] gi|315077696|gb|EFT49747.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2] gi|327453453|gb|EGF00108.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1] Length = 1072 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 148/995 (14%), Positives = 297/995 (29%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + D LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDTQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|319638182|ref|ZP_07992945.1| ATP-dependent DNA helicase [Neisseria mucosa C102] gi|317400455|gb|EFV81113.1| ATP-dependent DNA helicase [Neisseria mucosa C102] Length = 666 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEEAVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQ----------------- 315 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 S A + I ++G D Q D VL R + Sbjct: 316 ------SEQHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 361 LRS----ARIPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q + Q + I A+ + Sbjct: 417 LGKLNTYAHEHECSLYEAAQTEEALALLNHTNRQHLQAFMDMIESYRAKAEISEAGELIH 476 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + + + ++ EL + Sbjct: 477 NLLREIDYENHLLANEEGKAGEIKWRNVTDLTGWLEHKGEQDGKNIIELAQTIALMTLLE 536 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V++ T+H +KGLE P VFLV + H Sbjct: 537 GK-GEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEP 620 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 621 SRFIDEMPQED 631 >gi|260581112|ref|ZP_05848933.1| DNA helicase II [Haemophilus influenzae RdAW] gi|260092241|gb|EEW76183.1| DNA helicase II [Haemophilus influenzae RdAW] Length = 727 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILAG----------KTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|121608662|ref|YP_996469.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121553302|gb|ABM57451.1| ATP-dependent DNA helicase UvrD [Verminephrobacter eiseniae EF01-2] Length = 793 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 103/574 (17%), Positives = 194/574 (33%), Gaps = 130/574 (22%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YEE ++ V+DF +L++ + +LL+ D +R + HIL+DE QDT+ + Sbjct: 182 EIYQLYEEQCQREGVVDFGELMLRSYELLRDNDH---LRAHYQRRFAHILVDEFQDTNQL 238 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ L + + + ++ AVGD+ QSIY+F GA + R + Sbjct: 239 QYAWLKQLAGNVV--DGRYQAHGSVLAVGDDDQSIYAFRGARVGNMADFVREFGVQ---- 292 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RS + IL + + S + G + +T G+ V Sbjct: 293 ----QQIKLEQNYRSYSHILDSANALISHNSSRLGKNLRTTQG-------PGEPVRV--- 338 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + SS A+ + I ++ +D Sbjct: 339 -------------------------YEASSDLAEAQWMVDEIKQLLRSD---------GF 364 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + ++I VL R + +I + + + IK +A R + + Sbjct: 365 EHREIAVLYRSNAQSRVIESAL----FNAGVPYRVYGGLRFFERAEIKHALAYLRLLENP 420 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 +DD SF ++ P I + R ++Y+ + + + Sbjct: 421 QDDTSFARVVNFPPRGIGARSIEVLQDAARAAGCSLYDGVSAVPGKAGINLGAFVALVDG 480 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539 L + + +L + + F + G + I+ L E +N Sbjct: 481 LRAQTRGLNLRSIIEQMLESTRLVAHFCTEKEGADRIENLQELINAAESFVTQEGFGRDA 540 Query: 540 ----------------------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + ++ +L L + L A N V++MT Sbjct: 541 VALPLDEHGGAAPPKPPMPGIVDADTGETLSPLAAFLTHAALEAGDNQAQAGQNAVQLMT 600 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 VH +KGLE VF+ +F H++ Sbjct: 601 VHASKGLEFDGVFIGGMEEGLFPHEN---------------------------------- 626 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 ++ T EE RL+YV +TRA +L + Sbjct: 627 AASERDTLEEERRLMYVAITRARRRLYLSHSQTR 660 >gi|319776569|ref|YP_004139057.1| DNA helicase II [Haemophilus influenzae F3047] gi|319897345|ref|YP_004135541.1| DNA helicase ii [Haemophilus influenzae F3031] gi|317432850|emb|CBY81215.1| DNA helicase II [Haemophilus influenzae F3031] gi|317451160|emb|CBY87393.1| DNA helicase II [Haemophilus influenzae F3047] Length = 727 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 277 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|254697750|ref|ZP_05159578.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260762180|ref|ZP_05874523.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260672612|gb|EEX59433.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] Length = 853 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 195/694 (28%), Gaps = 151/694 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+++ + + I + + +IL+DE QDT+ Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268 Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221 Q+ +R L + L VGD Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328 Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 + QSIY + GAE +LR ++ +I+L ++RSTA IL + + Sbjct: 329 DDQSIYGWRGAELDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380 Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341 E G + + + + + +DS + Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411 Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 AR + I + +N + +LVR L Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460 ++ + L I+D MA R + DDL+ ++ +P E I +I R Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513 Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 +++ + S + V++ + + IL Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573 Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571 + + E ++ L E + E L LE + + + + Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V I+T+H+AKGLE VFL +F H+ Sbjct: 626 VNIITLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 + +S EE RL YVG+TRA L I SN Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699 Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 + E E + + +N Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 + S ++ + RG + Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793 >gi|238897902|ref|YP_002923581.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465659|gb|ACQ67433.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 731 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 112/554 (20%), Positives = 192/554 (34%), Gaps = 117/554 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ +L I Q +HIL+DE QDT+ Sbjct: 171 RDIYQSYQEATDRAGLVDFSELLLRAYELWLNH---TNILDHYQQRWSHILVDEFQDTNT 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ IR+L E + VGD+ QSIY + GA+ + + + Sbjct: 228 VQYAWIRALAE----------KRAKVMIVGDDDQSIYGWRGAQVGNIQSFLKDFE----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + L ++RST ILT + + + E G + L Sbjct: 273 ---GAETVRLEQNYRSTPHILTAANTLIANNEGRMGKN---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W +Q + S F+ L + AR +A+ I Sbjct: 309 W-------TAQKEGEPISLYHAFNELDE-------ARFVAHQIKKWHEKGG--------- 345 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 Q KD +L R + ++ I + IKD +A R I + Sbjct: 346 -QLKDCAILYRSNAQSRVLEEAF----LQGNIPHRIYGGHRFFERQEIKDALAYLRLISN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------FQH 483 + DD SF ++ +P E + + R +T++E IQ + I + Sbjct: 401 RHDDASFERVINTPARGIGERTLSVLRQAARDREKTLWETIQILLHEKILAGRAASGLRR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 I+ I L + H ++ + G + L+E +N T + + Sbjct: 461 FIELIDSLAYETSEMPLHLQTDRVIKDSGLWLMYQEEKGERAQGRIENLEELVNATQQYD 520 Query: 541 --QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 Q +L L + L + + A+ + V++MT+H+AKGLE +F+V + Sbjct: 521 YRQYEDDTLSPLQAFLSDAVLEAGEGQADASQDSVQMMTLHSAKGLEFFKIFIVGMEEGM 580 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F K EE RL YVG+TR Sbjct: 581 FPSKMALNESG----------------------------------RLEEERRLAYVGLTR 606 Query: 658 ASDQLIICKHSNTS 671 A +L + Sbjct: 607 AMKELTLSYAERRR 620 >gi|157372049|ref|YP_001480038.1| exonuclease V subunit beta [Serratia proteamaculans 568] gi|157323813|gb|ABV42910.1| exodeoxyribonuclease V, beta subunit [Serratia proteamaculans 568] Length = 1183 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 139/967 (14%), Positives = 311/967 (32%), Gaps = 137/967 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 E I + + ++ +L ++G ++ L Q Sbjct: 224 EQIVARIDAIKAQWLAAAGDLEALISQSGVDKRSYSSKHLPNWLQKVGEWVVLETQDYQL 283 Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 + +++++ + K P ++ D T + A + + Sbjct: 284 PKELDKFRQSVLLDKTKKGEPPH----HALFVAIDELFDEPLTLRDLIMARALSEIRLSI 339 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 ++ K++ L F+DL+ + L+ + + I Q +IDE QDT Q+ Sbjct: 340 ----QQEKRQRAELGFDDLLSRLDSALQ-SEGGERLAQAIRQRYPVAMIDEFQDTDPQQY 394 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 + + L L +GD KQ+IY+F GA+ +R + T Sbjct: 395 RIFQKLY--------VGRPECGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 442 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 L ++RS+ ++ V+ +F+ E + + + Sbjct: 443 ------LETNWRSSPAMVNSVNHLFAQVEKPFLFGQIPFIEVA----------AAEKNRG 486 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368 + + +Q +P + W + + ++AR A I + + + K+ Sbjct: 487 LAFELQNQPHPAMQFWLQQGEGVGVSEYQQLMARLCATQIRDWLSAGQNQQAWLVDGEKR 546 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R ++A DI VLVR R + L+ L SV ++R + D KDL+ L + + Sbjct: 547 RAVEASDITVLVRSRNEAALVRDALSAL---AIPSVYLSNRDSVFDTPEAKDLLWLLQAV 603 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 L+ E + + + + L + + + + K+ + + V+ + Sbjct: 604 LAPEQERTLRSAMATGLMGLDAQALDGLNRDERAWDALVNEFDKYRTLWLR--RGVLPML 661 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545 E+++ +L + G ++ L E L L +E Sbjct: 662 REVMNQRH------LAENLLASLGGERRLTDVM------HLGELLQEASAQLDSEHALVR 709 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L + I++ + + ++ + V+++T+H +KGLE +V+L G+ + + Sbjct: 710 WLAQQIAQPNRQSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQVLYH 769 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662 Q+ N I+ ++ E RLLYV +TR+ Sbjct: 770 DR-------------HSFQALLDLNADEQSIEWAEEERLAEDLRLLYVALTRSVYHCSIG 816 Query: 663 ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------DEWIAY 712 +I + ++ +V D + L + Sbjct: 817 IAPLIQGTRKKQGDSDLHRSALGYLVQAGQAGDAAYLQQCLQQLAVDGVALSLVESLDEQ 876 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK-----LFSPIKNDINEPYILNPSTIDTKGK 767 W P+ T L + ++Q+ D ++ + + D+ ++ + + Sbjct: 877 PWQPQTPDLTELSAKHFMRQVQDFWRVTSYTGLQQHGTSLMQDLLPRLDVDAAGEQAQDS 936 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 + + + G +H L + I + + ++ + + LL Sbjct: 937 EPALTPHTFPRGAGPGTFLHSLFETI-DFTQPLDEAWLLEQLQQQG--FGEHWQPILLAW 993 Query: 828 ITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKKDI------------------- 862 + LL P+ ++ +E+ I + Sbjct: 994 MQVLLNTPLNDTGVALSALAPQHKQAELQFYLPIEQLLQARELDKLVKSYDPLSARCPEL 1053 Query: 863 -------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSI 906 ++ G ID + Q ++ +YK++ + + + Q + Sbjct: 1054 DFQQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQPAMEQAMAEHRYDLQYQL 1113 Query: 907 YEKILKD 913 Y L Sbjct: 1114 YTLALHR 1120 >gi|241663638|ref|YP_002981998.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240865665|gb|ACS63326.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 786 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 116/715 (16%), Positives = 222/715 (31%), Gaps = 153/715 (21%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W + +VS + + Q + + Sbjct: 28 GAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTNKAAKEMTARLQAMLPINTRAMWIGT 87 Query: 66 FS----LLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L PQ + TQ+ L + L K Q Sbjct: 88 FHGLCNRLLRAHFRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKYPPKNVQYFINGA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ + L A Y+ ++ V+DF +L++ +LL+ D IR Sbjct: 148 KEQGLRAGDLEIANEYDRRMADLYAAYDAQCQREGVVDFAELLLRCYELLRYNDA---IR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + HIL+DE QDT+ +Q+ ++ L G +P +FAVGD+ QSIY+F Sbjct: 205 AHYQRRFKHILVDEFQDTNKLQYAWLKILAGLGEPGV----TPNAIFAVGDDDQSIYAFR 260 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA ++ +R + I+L ++RS IL + + S G + Sbjct: 261 GANVGNMVDFEREFRVE--------HRIKLEQNYRSHGHILDTANHLISHNTRRLGKNLR 312 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V++++ + A I Sbjct: 313 TD---------AGHGEPVRVYQAATDGQE--------------------------AGWIV 337 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + I T + +I +L R + +I I Sbjct: 338 DEIRDRIATG----------MSRSEIAILYRSNAQSRVIEHAL----FSAGIPYKVYGGL 383 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469 + IK +A + + + ++D +F ++ P + ++ R ++ Sbjct: 384 RFFERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAARLYGISLAAA 443 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528 + +K ++ I ++ + + + ++ A + G + I+ Sbjct: 444 VPYLTGAAGTKLSAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGQDRIEN 503 Query: 529 LDEFLNFTLRNEQNS-------------------------------------YSSLQELI 551 L E + + + L+ Sbjct: 504 LQELVTAAQAFVAEEGYGVDAIATALPVRHDAMLRIEGGETDTASELVTDETPAEMTPLV 563 Query: 552 SELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + L A + V++MTVH AKGLE VVF+ +F H++ Sbjct: 564 AFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFHVVFITGLEEGLFPHENS------- 616 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++K EE RL+YV +TRA ++L + Sbjct: 617 ---------------------------QMEKDGLEEERRLMYVAITRARERLYLS 644 >gi|319943193|ref|ZP_08017476.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia mirabilis ATCC 51599] gi|319743735|gb|EFV96139.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia mirabilis ATCC 51599] Length = 808 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 113/774 (14%), Positives = 217/774 (28%), Gaps = 151/774 (19%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + F ++ S + + + P + ++ Sbjct: 97 LRAHHRDAGLPASFQIMDSADQLGAIKRLLRGLNVDDQQFQPKAVQHF------INGSKE 150 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + L Y+E ++ V+DF +L++ +LL++ +R Sbjct: 151 AGLRAADVSGHDSHSRRLAELYGAYDEQCQREGVVDFAELLLRAYELLQRN---QPLRQH 207 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 Q HILIDE QDT+ +Q+ + L +LFAVGD+ QSIY+F GA Sbjct: 208 YQQRFRHILIDEFQDTNDLQYRWLTLLAG----------GGASLFAVGDDDQSIYAFRGA 257 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R +I L ++RS A IL + + + G Sbjct: 258 NVGNMAAFERDY--------AGPQLIRLEQNYRSHAHILDSANHLIRQNAHRLGK----- 304 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW D+ + ++ D A+ + Sbjct: 305 ----------------DLW------TDAGEGEPVRIFAAFSDRDE--------AQWLLEE 334 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++ + +I +L R + ++ + Sbjct: 335 IRALVADG----------MSRSEIAILYRSNAQSRILEHTL----FSAGVPYKVYGGLRF 380 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471 + IK +A R I + +DD +F+ ++ P + + T R ++Y + Sbjct: 381 FERAEIKHALAYLRLIENPDDDGAFLRVVNFPARGIGARTLENLQDTARTHGISLYRAVP 440 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLD 530 + G S+ + I + + + ++G + R G E I+ L Sbjct: 441 MTSGAGGSRLLQFVMLIELMRQNSARLPLSESIDDVIGRSGLMTHYEQEREGQERIENLK 500 Query: 531 EFLNFTLRNEQNSYSS------------------------------------LQELISEL 554 E +N L + + L + L Sbjct: 501 ELVNAALAFQAEGGIDAATPASVGLAGTTAGTALPAASDGAVLPADAAPVVQVSPLAAFL 560 Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + V++MTVH AKGLE VF+ +F H++ Sbjct: 561 AHASLESGDGQAEEGVDAVQLMTVHAAKGLEFETVFVTGLEEGLFPHENSASDPGG---- 616 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 EE RL+YV MTRA +L + Sbjct: 617 ------------------------------LEEERRLMYVAMTRARRRLYLSLAQTRMLH 646 Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733 ++ + + + + S + + + Sbjct: 647 GQTRYNMQSRFLSELPERSLKWLSEMPSASAQGSLGLGADRGSRG--YYGGGGYGGGGYG 704 Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787 + + ++E + S R H Sbjct: 705 SGSGNGGGNWRPRLDSAVHERNRQSGWVRPADPGIPASGDASGKARAGRDSRYH 758 >gi|116053593|ref|YP_793920.1| DNA-dependent helicase II [Pseudomonas aeruginosa UCBPP-PA14] gi|115588814|gb|ABJ14829.1| DNA helicase II [Pseudomonas aeruginosa UCBPP-PA14] Length = 728 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 103/591 (17%), Positives = 192/591 (32%), Gaps = 116/591 (19%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + L + YE A + V+DF +L++ DL + + Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + HIL+DE QDT+ +Q+ +R L + +L VGD+ QSIY + G Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A + + + +I L ++RSTA IL + + + + G Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + S + F+ + AR + Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 +I + + + +I +L R + ++ K I Sbjct: 338 SIESALRGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I R +++E I Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443 Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + S ++ I L H ++ ++ Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEK 503 Query: 522 GNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + L L + L + A+ + +++MT+H+ Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSIQLMTLHS 563 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VFLV +F HK Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 + EE RL YVG+TRA +L++ + + Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPP 640 >gi|314967655|gb|EFT11754.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1] Length = 1072 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 149/995 (14%), Positives = 299/995 (30%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA + I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMEPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + D LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + I Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|153002398|ref|YP_001368079.1| DNA-dependent helicase II [Shewanella baltica OS185] gi|151367016|gb|ABS10016.1| DNA helicase II [Shewanella baltica OS185] Length = 722 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 96/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQDRFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I +++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKD 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R T+++ + A + + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-Q 541 I + Q + ++ A + + + G + + L+E + E Sbjct: 463 DLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFELP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNGFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|16273110|ref|NP_439344.1| DNA-dependent helicase II [Haemophilus influenzae Rd KW20] gi|1174922|sp|Q02322|UVRD_HAEIN RecName: Full=DNA helicase II gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd KW20] Length = 727 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILAG----------KTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|315655665|ref|ZP_07908563.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333] gi|315489729|gb|EFU79356.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333] Length = 877 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 104/707 (14%), Positives = 199/707 (28%), Gaps = 144/707 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L ++ + ++ ++L + Sbjct: 85 GAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLVGNAAKYMWVST 144 Query: 66 FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110 F L T+ F+ T+ + + + K + + Sbjct: 145 FHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIKGRGLDPKRFPPKSFAAKISQA 204 Query: 111 RDRF---NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ + + L + Y++ ++ DF+DLI +T L K Sbjct: 205 KNELITPEVFAVGAGVDKMSQLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPD-- 262 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + + H+L+DE QDT+ Q+E+IR LT P L VGD QSIY Sbjct: 263 -ILARYRAKFRHVLVDEYQDTNPAQYELIRLLT---VGATGDAQPPAELTVVGDSDQSIY 318 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA + + + + + L ++RST IL+V + + S E + Sbjct: 319 AFRGATIRNIEEFESDFP--------GATTVYLEQNYRSTGTILSVANAIISENEGRRKK 370 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + ++ L + A Sbjct: 371 NLWTDAGQGMQAV-----------------------------------LYAADTDRDEAA 395 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I + + + + V R + + + I Sbjct: 396 FIVRELQKLRQEGS----------SWDEFAVFYRTNAQSRSLEEML----TREGIPYRVV 441 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---------- 457 D IKD +A + DD + + +L P + + I Sbjct: 442 GGTKFYDRREIKDAIAYLCAAANPADDGNLLRVLNEPKRGLGDKAVQTIREVSLSENLDF 501 Query: 458 -TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQ 515 + + + + + + + + A + L Sbjct: 502 GQALRQFLPGGTHHGDLSAKASAGITEFVGVLDAMRALDAAGAPLDEILDTALEDSGYLP 561 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSAN--- 568 + + ++ L E N + + L + + + + +A Sbjct: 562 KLRKSNDPQDDARVENLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAGQPE 621 Query: 569 ----------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 EV +MTVHTAKGLE VF+ +F H + Sbjct: 622 RPADPVHPAAPPEVTLMTVHTAKGLEFNTVFVTGMEDGLFPHSRSLESP----------- 670 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 E RL YV +TRA +L + Sbjct: 671 -----------------------QDIAEERRLAYVAVTRARQRLYLT 694 >gi|16130724|ref|NP_417297.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|89109603|ref|AP_003383.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str. K-12 substr. W3110] gi|157162272|ref|YP_001459590.1| exonuclease V subunit beta [Escherichia coli HS] gi|170018937|ref|YP_001723891.1| exonuclease V subunit beta [Escherichia coli ATCC 8739] gi|170082388|ref|YP_001731708.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|188492424|ref|ZP_02999694.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 53638] gi|238901955|ref|YP_002927751.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli BW2952] gi|256019384|ref|ZP_05433249.1| exonuclease V subunit beta [Shigella sp. D9] gi|300950553|ref|ZP_07164460.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 116-1] gi|300958138|ref|ZP_07170295.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 175-1] gi|119668|sp|P08394|EX5B_ECOLI RecName: Full=Exodeoxyribonuclease V beta chain; AltName: Full=Exodeoxyribonuclease V 135 kDa polypeptide gi|56966626|pdb|1W36|B Chain B, Recbcd:dna Complex gi|56966629|pdb|1W36|E Chain E, Recbcd:dna Complex gi|266618790|pdb|3K70|B Chain B, Crystal Structure Of The Complete Initiation Complex Of Recbcd gi|266618793|pdb|3K70|E Chain E, Crystal Structure Of The Complete Initiation Complex Of Recbcd gi|5923820|gb|AAD56369.1|AF179304_1 RecB2109 [Escherichia coli] gi|42682|emb|CAA28250.1| unnamed protein product [Escherichia coli] gi|882712|gb|AAB40467.1| exonuclease V subunit [Escherichia coli str. K-12 substr. MG1655] gi|1789183|gb|AAC75859.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|85675636|dbj|BAE76889.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str. K12 substr. W3110] gi|157067952|gb|ABV07207.1| exodeoxyribonuclease V, beta subunit [Escherichia coli HS] gi|169753865|gb|ACA76564.1| exodeoxyribonuclease V, beta subunit [Escherichia coli ATCC 8739] gi|169890223|gb|ACB03930.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|188487623|gb|EDU62726.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 53638] gi|238861053|gb|ACR63051.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli BW2952] gi|260448132|gb|ACX38554.1| exodeoxyribonuclease V, beta subunit [Escherichia coli DH1] gi|300315160|gb|EFJ64944.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 175-1] gi|300450121|gb|EFK13741.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 116-1] gi|315137424|dbj|BAJ44583.1| exonuclease V subunit beta [Escherichia coli DH1] gi|323935821|gb|EGB32124.1| exodeoxyribonuclease V [Escherichia coli E1520] gi|323941572|gb|EGB37753.1| exodeoxyribonuclease V [Escherichia coli E482] gi|332102855|gb|EGJ06201.1| exonuclease V (RecBCD complex) beta subunit [Shigella sp. D9] Length = 1180 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|167855351|ref|ZP_02478118.1| DNA-dependent helicase II [Haemophilus parasuis 29755] gi|167853499|gb|EDS24746.1| DNA-dependent helicase II [Haemophilus parasuis 29755] Length = 727 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 110/581 (18%), Positives = 193/581 (33%), Gaps = 121/581 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 Y+EA + +LDF +L+I +L K + I + Q HILIDE QDT+ IQ Sbjct: 178 FYQIYQEASDRAGLLDFAELLIRAYELFKHNPL---ILQRYQQRFQHILIDEFQDTNNIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +++I L + VGD+ QSIY + GA+ + + R Sbjct: 235 YDLIHLLAG----------KTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN------ 278 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST IL + + S +N G + LW Sbjct: 279 --AQTIRLEQNYRSTGHILNSANALISNNDNRLGKN---------------------LW- 314 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + AR +A I + Sbjct: 315 ------TDKGDGDPVDIYCAFNELDE-------ARFVASQIKQWKEDEG----------D 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 VL R + +I I + IKD +A R I +++ Sbjct: 352 FNQCAVLYRGNAQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 407 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ IQ + S + Sbjct: 408 DDAAFERVVNTPPRAIGDRTLDILRQLTRTRQITLWQAIQVAVQEEHLSGRSASALLRFV 467 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--- 539 + I+ L + + ++ + + G + I+ L+E + T + Sbjct: 468 ELINALEQETEEMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATRQFVKP 527 Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E + L ++ S + + V +MT+H+AKGLE P VF+V +F Sbjct: 528 DEAEEMTDLTAFLTHASLEAGET--QASLHQDYVELMTLHSAKGLEFPRVFIVGVEEGIF 585 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + +E RL YVG+TRA Sbjct: 586 PSGMSFD-----------------------------------EGRLQEERRLAYVGITRA 610 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L I + K + + + R +++ Sbjct: 611 KKKLTISYAESRRLYGKEERHLPSRFIGELPEEHIREVRLR 651 >gi|87199314|ref|YP_496571.1| ATP-dependent DNA helicase Rep [Novosphingobium aromaticivorans DSM 12444] gi|87134995|gb|ABD25737.1| ATP-dependent DNA helicase, Rep family [Novosphingobium aromaticivorans DSM 12444] Length = 765 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 105/646 (16%), Positives = 189/646 (29%), Gaps = 118/646 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + A Y+ ++ DF DL+++ ++ ++ + Q ++++DE QDT+ Sbjct: 183 QRFYALYQNRLRELNACDFGDLLMHMLNIFRRE---REVLEMWQQRFKYVMVDEYQDTNA 239 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ +R L ++ + + VGD+ QSIYS+ GAE +LR ++ Sbjct: 240 VQYLWLRLLAQN----------RKNICVVGDDDQSIYSWRGAEVANILRFEKDFP----- 284 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I L ++RST IL + + G + L Sbjct: 285 ---GAKVIRLEQNYRSTPHILGAASGLIAENSERLGKT---------------------L 320 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W W + + ARRI I + Sbjct: 321 W---TEVDGGDKVRVIGVWDAPEE-----------ARRIGDEIERLEREGAPLDR----- 361 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +LVR + T I + F + I+D +A R I S Sbjct: 362 -----VAILVRAQFQTRTIEDRF----IQIGLGYRIVGGFRFYERAEIRDALAYLRIIAS 412 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 +DDL+F + +P + + K+ R + + + Sbjct: 413 PQDDLAFERIYNTPKRGLGDKTLEKLHRHARARSIPLSLASVEILDTDELPARARGTLAA 472 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 +++ ++ P + IL + E L+ E+ Sbjct: 473 LMRDFGRWRDASKSLVPAELARTILDESGYTAALQAEKTAEAAGRLENLTELARAMEE-- 530 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + L LE + A+ +V IMT+H AKGLE VFL VF + Sbjct: 531 ---YETLGDFLEHVSLVMDNEAVADEEKVTIMTIHAAKGLEFDNVFLPGWEEGVFPSQRS 587 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + ++ EE RL YV +TRA Sbjct: 588 LDEGGL--------------------------------ASLEEERRLAYVAITRARRHCT 615 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 I +N ++ + + + T WS Sbjct: 616 ILHAAN----RQIYGQWTSSIPSRFIGELPAEHIEEETTLSGGASMWRANWSEREDPFAH 671 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + + + + P S K Sbjct: 672 VAQATPSRGASRGPGWQRAAAQPYNPQPRRIAETTRSAASFAAKPR 717 >gi|157157251|ref|YP_001464155.1| exonuclease V subunit beta [Escherichia coli E24377A] gi|300923197|ref|ZP_07139252.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 182-1] gi|301326148|ref|ZP_07219534.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 78-1] gi|157079281|gb|ABV18989.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E24377A] gi|300420506|gb|EFK03817.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 182-1] gi|300847113|gb|EFK74873.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 78-1] Length = 1180 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|331017795|gb|EGH97851.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 727 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 193/592 (32%), Gaps = 116/592 (19%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + S LT K + YE A ++ V+DF +L++ DL + + Sbjct: 154 EGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRDNPG---LLA 210 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + H+L+DE QDT+ +Q+ +R L + +L VGD+ QSIY + G Sbjct: 211 HYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDDDQSIYGWRG 260 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + + +I L ++RSTA IL + + G Sbjct: 261 AKIENIHQYSDDFP--------DTEVIRLEQNYRSTASILKAANGLIINNSGRLGK---- 308 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + + + F+ + AR + Sbjct: 309 -----------------ELW-------TDVGDGELINLYAAFNEHDE-------ARYVVE 337 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 TI + + T I DI +L R + ++ +I Sbjct: 338 TIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERIPYRIYGGQR 383 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I RH +++E + Sbjct: 384 FFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARHADVSMWEAM 443 Query: 471 Q------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + I+ I L H ++ +Q Sbjct: 444 RLLVANKGLTGRAAGALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLITYHEQEKGEK 503 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + L L + L + + +++MT+H+ Sbjct: 504 GQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHEDSIQLMTLHS 563 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P VFLV +F HK + Sbjct: 564 AKGLEFPHVFLVGMEEGLFPHKMSLEEPG------------------------------- 592 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA QL++ V + Sbjct: 593 ---RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPA 641 >gi|228474096|ref|ZP_04058837.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC 33624] gi|228274610|gb|EEK13451.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC 33624] Length = 772 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 111/702 (15%), Positives = 218/702 (31%), Gaps = 125/702 (17%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K + ++ ++ I ++ + ++ ++ + + A+Y + K +DF+ Sbjct: 135 KYKQIASRISSYKNNLITVKAYYENPELQEADAMAKRPRLGDIYANYVDRCFKAGAMDFD 194 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL V + K +IL+DE QDT+ Q+ ++R+L + F Sbjct: 195 DLLLRTNELLN---VFPEVLAKYQHRFRYILVDEYQDTNHSQYLIVRALADRF------- 244 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIY+F GA + ++ + L ++RST +I Sbjct: 245 ---QNICVVGDDAQSIYAFRGANIDNIFNFQKDYPN--------VGVYRLEQNYRSTKNI 293 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + V + V D++ + + Sbjct: 294 VEAANNVIEHNKARLEK---------------------------VVWTDNESGNRIKVHR 326 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 S D+ R +A TIF + + + + VL R + I Sbjct: 327 SPTDADEG--------RFVA---------GTIFESAMQEQLPYGNFAVLYRTNSQSRAIE 369 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD++A R ++++ D+ + ++ P + Sbjct: 370 DALR----KRDIPYRIYGGLSFYQRKEIKDILAYFRLVINENDEEALQRVINFPARGIGD 425 Query: 451 DDIFKICTQRHE----------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500 + K+ +E V +Y K + + I + + Sbjct: 426 TTMEKLTLCANEFKLPIFEIIKNLEVMDYGLKINSATRVRLLEFANMILSFRIMMETQDA 485 Query: 501 HDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQNSYSSLQ---ELISEL 554 I +F G E + ++E LN + + L L Sbjct: 486 FTLAEHIAKRTGILNEFKKDGTPEGVERMQNIEELLNGIRDFVEGQEQVEEEGNSLAEFL 545 Query: 555 EQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + + N V +MT+H AKGLE P VF+V +F Sbjct: 546 QDVALATDMDKEVEDENRVSLMTIHLAKGLEFPHVFIVGMEEDLFPS------------- 592 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK----HSN 669 + ++ EE RL YV +TRA Q + + Sbjct: 593 ---------------------ALSQNTRTELEEERRLFYVALTRAEKQAYLTYTESRYRW 631 Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729 R ++ + ++ D + + S + Sbjct: 632 GKLMDAEPSRFIDEIEERYLEYLTPKDNYRYRPLVDIDAFAPVDKSKLRQQKPTNSPPPA 691 Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 K+ ++Q +L P + + + Sbjct: 692 YKKPNEDQLKKLRLQKPEQAKPIATGDIPKVAVGNIIDHERF 733 >gi|216673|dbj|BAA00048.1| uvrD [Escherichia coli] gi|355936|prf||1207236A helicase II Length = 720 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 185/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+ + ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLRQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|301169926|emb|CBW29530.1| DNA-dependent ATPase I and helicase II [Haemophilus influenzae 10810] Length = 727 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILAG----------KTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 277 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYAAFNELDE-------AKFVASQIQDWVENGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|218289816|ref|ZP_03494016.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] gi|218240107|gb|EED07292.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] Length = 705 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 119/672 (17%), Positives = 233/672 (34%), Gaps = 116/672 (17%) Query: 73 FLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 F Q++++ Q + DLK + + + ++ + +S + L +A Sbjct: 112 FTILDSEDQESLVQQCLLDLGYDLKAHDARSIKHRISQWKNEGAHRVVNESNPSDL-IAD 170 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++ +DF+DLI +T L + + +R + ++ H+L+DE QDT+ I Sbjct: 171 RVMELYDKRLFAANAMDFDDLIGHTVRLFEAHED---VRDRYQEKFRHVLVDEYQDTNGI 227 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++R L R L AVGD Q+IY++ GA+ + ++R +R Sbjct: 228 QFRLLRLLCA----------KHRNLCAVGDADQAIYAWRGADSEHMMRFERDFP------ 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+ L ++RST +IL + V + + ST + + Sbjct: 272 --DAKIVLLTRNYRSTQEILDAANSVIAHNPRRRPKELRSTRGHGDKPLAVRLPDGG--- 326 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 A +A I + Sbjct: 327 --------------------------------AEALYVAEAIEEHVRNGG---------- 344 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +D VL R + I + I D +KD++A R I++ Sbjct: 345 RYEDCAVLYRANAQSRAIEEKL----LERAIPYTVVGGMTFYDRREVKDVLAYLRVIVNP 400 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-----FANCGISKFQHVI 485 +D++S + ++ P E + ++ E ++YE + + + Sbjct: 401 QDEISLLRIINRPKRGLGEAAVDRLLEFAHAEGMSLYEALAHGEEAGLSERAAEAARQFH 460 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542 + EL + + +F +L A R+ ++ E ++ +DE + T ++ Sbjct: 461 ASLQELALWMEGMAVSEFLAEVLHATHYREMYLESGKKEDLARVENIDELFSVTRSFDER 520 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 ++ E ++E+ I + VR+MT+H +KGLE PVVFLV +F H Sbjct: 521 RGGTVAEFLAEVSLLS-DIDKERDRGKGSVRLMTLHASKGLEFPVVFLVGMEEGLFPHAR 579 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + EE L YVG+TRA D+L Sbjct: 580 SMDDPL----------------------------------RIEEERNLCYVGLTRAMDRL 605 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 ++ + + ++ R + + + + + H + Sbjct: 606 VLTHAAWRTLYGQTVAREPSRFLAEIRDDLVVRVDLAEALEPDVLRPGDRVVHPQHGQGI 665 Query: 723 PLEREETIKQLM 734 L E + Sbjct: 666 VLAVETHAGEER 677 >gi|90414255|ref|ZP_01222235.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum 3TCK] gi|90324702|gb|EAS41243.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum 3TCK] Length = 724 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 101/551 (18%), Positives = 180/551 (32%), Gaps = 119/551 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ +L++ IR HIL+DE QDT+ I Sbjct: 172 RIYTAYQEACDRAGLVDFAELLLRAFELVRDN---KHIREHYQARFKHILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + R R Sbjct: 229 QFAWLRLMAG----------VDCNVMIVGDDDQSIYGWRGAQVENIQRFLRDFAN----- 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 S I L ++RST +IL +++ + G LW Sbjct: 274 ---ASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S F+ L + AR I + Sbjct: 310 -------TDGEEGELISLYSAFNELDE-------ARFAVGKIKEWRNE---------KGG 346 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D L R + ++ + + +KD +A R + ++ Sbjct: 347 SLNDTAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEVKDSLAYLRLMANR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484 DD SF ++ +P + + I R + T+++ + + Sbjct: 403 NDDASFERVVNTPTRGLGDRTLETIRLAARDRSVTMWQASVSLLEEQVLAGRAANSLRRF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-- 539 I+ ++ L + ++ R + G + + L+E + T + Sbjct: 463 IELVNALEDDTRDLPLFQQTDDVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFVV 522 Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 E + L +S + + V++MT+H+AKGLE P+VF+V + Sbjct: 523 PEEAEEMTPLAAFLSHAALEAGEGQADDFE--DAVQLMTMHSAKGLEFPIVFMVGVEEGM 580 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F + EE RL YVGMTR Sbjct: 581 FPSSRTT----------------------------------EEVGRLEEERRLCYVGMTR 606 Query: 658 ASDQLIICKHS 668 A +L I Sbjct: 607 AMKKLYITYAE 617 >gi|29830006|ref|NP_824640.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] gi|29607116|dbj|BAC71175.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] Length = 861 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 123/744 (16%), Positives = 226/744 (30%), Gaps = 165/744 (22%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P V + + + + + + Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 183 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + K +LK +L +D F+ T Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 233 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A Y+ ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 234 ---LAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS----------SPRTLFAVGDEKQSIYSFHGAEPKR 236 DT+ Q+ ++R L G P L VGD QSIY+F GA + Sbjct: 288 DTNHAQYALVRELVGVPGPGGGARPEDEPPREDDLEPAELCVVGDADQSIYAFRGATIRN 347 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +L+ + + I L ++RST IL+ + V E+ + + Sbjct: 348 ILQFEEDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN-------- 391 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + Q + + A+ +A I + Sbjct: 392 -------------LW-------TNAGAGAQITGYVADTEHDE-------AQFVADEIDRL 424 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 +A D+ V R + + + + + Sbjct: 425 TDAGE---------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERK 471 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN 475 ++D++A R + + ED + +L P + I + E + + +++ Sbjct: 472 EVRDVLAYLRVLSNPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFAQALRRVDE 531 Query: 476 CGISKFQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---V 525 + + +L IA+ + P +L + + + Sbjct: 532 AYGMAARSTNAVKRFNTLMEDLRTIAESGAGPATVLEAVLERTGYLAELQASTDPQDETR 591 Query: 526 IDVLDEFLNFTLRNEQNSYSS-------------------------------LQELISEL 554 I+ L E L EQ S + L + + Sbjct: 592 IENLQELAAVALEFEQESGAGEEAATGDAAGDAAGDAAGDAPGGAPGAASGDLSAFLERV 651 Query: 555 EQYPPTIKRAHSANHNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + + + N V +MT+HTAKGLE PVVFL VF H Sbjct: 652 ALVADSDQIPDEEDGNGVITLMTLHTAKGLEFPVVFLTGMEDGVFPHMRSLG-------- 703 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + EE RL YVG+TRA ++L + + S S Sbjct: 704 --------------------------QTKELEEERRLAYVGITRARERLYLTRSSLRSAW 737 Query: 674 KKSNQRTWYDMVYDSFHNDERVKK 697 + + + + K+ Sbjct: 738 GQPSYNPPSRFLEEIPDAHLEWKR 761 >gi|291461061|ref|ZP_06026707.2| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC 33693] gi|291379194|gb|EFE86712.1| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC 33693] Length = 739 Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats. Identities = 105/545 (19%), Positives = 182/545 (33%), Gaps = 117/545 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y ++ +DF D+++NT LL+ I KI ++ +I+IDE QDT+ + Sbjct: 171 EVYEKYNRNLIESNAMDFSDILLNTYKLLQNSS----ILEKIQKKYKYIMIDEYQDTNNL 226 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I + L VGDE QSIY F GA +L + Sbjct: 227 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYSN----- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++RST+ IL +++ ++++ LW Sbjct: 272 ---AKIIKLEENYRSTSTILDAANELIKNNKSSKDKR---------------------LW 307 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ + S +I I I Sbjct: 308 -------TQNGKGDLIKVLVCDNARDEVS-------KIIDIIKENHQNG----------I 343 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 KD+ +L R + + Y I IKD++A I++ Sbjct: 344 PYKDMTILYRTNMQSRVFEEGL----LRYNIPHKIFGGISFYSRAEIKDIIAYLSIIVNP 399 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 +D+L+ ++ P E I KI R + + + G K + Sbjct: 400 QDELNLQRIVNVPKRKVGEKGIEKIIAFARENNLNLLDALSHIKDISGLTATGKEKLSEM 459 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542 I EL ++ + +L K + I+ ++EF N L E Sbjct: 460 YDIIKELKDLSYSETASYIVETLLDKIKYIDHIKETYDDADARIENIEEFKNSILELE-- 517 Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + + L LE + +++MT+H +KGLE P+VFLV +++F Sbjct: 518 NVVGVLRLSEYLENVSLVSATDDLEDEKDYIKLMTIHNSKGLEFPIVFLVGFENEIFPG- 576 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + + EE RL YV +TRA + Sbjct: 577 ---------------------------------VRASFDEKEMEEERRLCYVALTRAEKK 603 Query: 662 LIICK 666 L + Sbjct: 604 LYLSH 608 >gi|300931283|ref|ZP_07146623.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 187-1] gi|300460937|gb|EFK24430.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 187-1] Length = 1180 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 277/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ L+ L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAALVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQIGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|15602276|ref|NP_245348.1| DNA-dependent helicase II [Pasteurella multocida subsp. multocida str. Pm70] gi|12720662|gb|AAK02495.1| UvrD [Pasteurella multocida subsp. multocida str. Pm70] Length = 726 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L++ +L K+ V I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLLRAYELWLKKPV---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + ++ L + + VGD+ QSIY + GA+ + + R Sbjct: 234 YAWVKLLAGE----------QGKVMIVGDDDQSIYGWRGAKIENIQRFLDDFSN------ 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL +++ S N G + LW Sbjct: 278 --AQTIRLEQNYRSTGNILASANQLISNNSNRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + A ++ I I + Sbjct: 314 ------TDGEKGEPVGIYAAFNELDE-------ALFVSSQIKQWIENGG----------K 350 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 KD +L R + +I ++ + IKD +A R I +++ Sbjct: 351 LKDCAILYRSNSQSRVIEEAL----IRSQLPYRIYGGMRFFERQEIKDALAYLRLIANRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485 DD +F ++ +P + E + + + R T+++ Q + + Q + Sbjct: 407 DDAAFERVVNTPPRSIGERTLDMLRSVTREREVTLWQATQLAIHENLLTARAATALQRFL 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + G + I+ L+E + T + Sbjct: 467 ELINSLQQDTSEMPLFAQTDFVIKHSGLYAMYQQEKGEKGEVRIENLEELVTATKEFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L +L + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DEAEQLSDLTAFLTHASLEAGEEQASPHQDYVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKQ 612 Query: 661 QLIICKHSNTS 671 +L IC + Sbjct: 613 KLTICYAESRR 623 >gi|241760514|ref|ZP_04758607.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114] gi|241319018|gb|EER55520.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114] Length = 666 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 108/609 (17%), Positives = 204/609 (33%), Gaps = 116/609 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEEAVQTAANVWEQQTARVYASYQETLQSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q++ Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 A + I + + S+ Q D VL R + R Sbjct: 318 --------QHEADWVVSQI---VKQKLVGSDKT----QYADFAVLYRGNHQARIFEEALR 362 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 ++ + D IKD+++ R + + DD +F+ + +P + + Sbjct: 363 S----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPRRGIGDVTLG 418 Query: 455 KIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 K+ ++YE Q N Q + A+ + + Sbjct: 419 KLNTYAHEHECSLYEAAQTEEALALLNNTNRQHLQAFMDMFGSYRAKAETSEAGELINSL 478 Query: 508 LGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 L ++ G + + + R + ++ EL + + Sbjct: 479 LKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQDGKNIIELAQTVALMTLLEGK 538 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + V++ T+H +KGLE P VFLV + H Sbjct: 539 -SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN---------------------- 575 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 +++ EE RL+YVG+TRA QL + + Sbjct: 576 -------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEPSR 622 Query: 684 MVYDSFHND 692 + + D Sbjct: 623 FIDEMPQED 631 >gi|187924773|ref|YP_001896415.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] gi|187715967|gb|ACD17191.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] Length = 783 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 123/807 (15%), Positives = 236/807 (29%), Gaps = 178/807 (22%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ LI + W + + S ++ + L Sbjct: 28 GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + T + L + L K Q Sbjct: 88 FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ K +T L Y++ ++ V+DF +L++ +LL +R Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ +Q+ ++ L ++FAVGD+ QSIY+F Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKMLAGQ----------TNSIFAVGDDDQSIYAFR 254 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + R +I+L ++RS IL +++ + G + Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + ++ S A I Sbjct: 307 TD---------AGHGEPVRVY--------------------------ESATDSQEASWIV 331 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +I T T +I +L R + I + I+ Sbjct: 332 EEIKALISTGT----------SRSEIAILYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + +K +A R I + DD +F ++ P I ++ R ++ Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAA 437 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 I A S + ++ Q S + ++ + + + R G + ++ Sbjct: 438 IPYVAGKAGSSLAAFANLVGKMRAETQQMSLPETVEYVVRTSGLSEFYQNEREGQDRLEN 497 Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543 L E +N Sbjct: 498 LQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTVVLDAPGIADPAQ 557 Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++ L L A V++MTVH AKGLE VF+ +F H+ Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ EE RL+YV +TRA ++ Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643 Query: 662 LIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI--KLTNSINKDEWIA 711 L + + + + + + E + + N+ +W A Sbjct: 644 LYLSFAQSRMLHGQTRYNIRSRFFDELPQETLKWLTPKVEAGARWGGRSDNAGYGRDWFA 703 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQK 738 T +TP + + + Sbjct: 704 RPGYTGPASSTPAQLPAFANEQRAAET 730 >gi|209550144|ref|YP_002282061.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535900|gb|ACI55835.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 825 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 112/669 (16%), Positives = 204/669 (30%), Gaps = 113/669 (16%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ DF DL+++ + +K + + +IL+DE QDT+ Sbjct: 222 RDLYFAYQARLTTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 278 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + P+ + VGD+ QSIY + GAE +LR ++ Sbjct: 279 AQYMWLRLLAQR------AKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 327 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + E G + + Sbjct: 328 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR----------------- 367 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 S + + +DS + AR I I + + Sbjct: 368 ---------SDPEDVKVQVHASWDSEEE-------ARAIGEEIEQLQRGKHLL------- 404 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D+ +LVR L ++ + L I+D MA R + Sbjct: 405 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQ 457 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + + + R + + Sbjct: 458 ASDDLAFERIINTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD 517 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 VI+ + + + IL + + E L+ E Sbjct: 518 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 574 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 S + + LE + + N + V IMT+H+AKGLE VFL +F H+ Sbjct: 575 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 632 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL YVG+TRA + Sbjct: 633 LD--------------------------------ESGRAGLEEERRLAYVGITRAKHRCH 660 Query: 664 ICKHSNTSNEK---KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 I SN + + D + ++ +++ ++ + Sbjct: 661 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN 720 Query: 721 NTPLE-REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 + + D + S + P +G+ +S S+ Sbjct: 721 SYSTPGWKRAQANKTDATRDNWGSRSGHAVERIGYGESGPKGRTIEGELVAKSTSSEPSR 780 Query: 780 FNRG-LIIH 787 F G + H Sbjct: 781 FTLGDRVFH 789 >gi|160914437|ref|ZP_02076652.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991] gi|158433595|gb|EDP11884.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991] Length = 729 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 91/564 (16%), Positives = 183/564 (32%), Gaps = 116/564 (20%) Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + ++ + + A YE+ + LDF+DL+I T +LK+ +R K Sbjct: 152 DANSALARANYEGERIMANVYAFYEKRLAEMFGLDFDDLLIFTYHILKEH---VEVRKKW 208 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 + ++ +DE QD ++Q+++I+ L ++ L VGD Q+IY++ GA+ Sbjct: 209 QRRFTYLHVDEFQDVDMLQYQIIKMLVKEDSY----------LCVVGDPDQTIYTWRGAQ 258 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 ++ ++ + L ++RST IL +++ N + Sbjct: 259 VDIIMNFEKDFPHS--------HTVILNENYRSTQPILQASNELIKNNRNRIEKELFTR- 309 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 ++ + + +T+ D +A I Sbjct: 310 --------------------------NESDERIVHFTAMDDYNEPI--------WVAGKI 335 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 ++ ++ +DI VL R + + D I Sbjct: 336 LSLHHNG----------VKYRDIAVLYRSNYLSRGLEKAL----LDQHIPYRIYGGVRFY 381 Query: 414 DHLAIKDLMALGRFIL--------SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464 D IKD ++ R + +L+ ++ P + + + Sbjct: 382 DRAEIKDALSYLRLLAPKVEGDDKELFKNLAVKRIINLPKRGIGAKTLETLEQEAAAKDT 441 Query: 465 TVYEYIQKFAN---CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 +YE +++ ++ I S + +L + + Sbjct: 442 NMYEILKQGGFGKGKAKESIAKFVEVIEACRSCVDTISIDQLLSKVLEDSGYMEMLRNDA 501 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581 E ++ L E ++ +N+ L+ L++ + N V++MT+H AK Sbjct: 502 EIERLENLKELISDIANYVENNPDG--SLLDYLQEISLYSDKEDLDNGEFVQLMTIHAAK 559 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE VF+ +F ++ I + Sbjct: 560 GLEFDRVFVYSLCDGIFPNERS--------------------------------INEGGQ 587 Query: 642 STQEEYNRLLYVGMTRASDQLIIC 665 EE RL YV TRA QL + Sbjct: 588 QALEEERRLAYVAFTRAKKQLFLS 611 >gi|329955139|ref|ZP_08296096.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056] gi|328526138|gb|EGF53157.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056] Length = 785 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 92/609 (15%), Positives = 187/609 (30%), Gaps = 121/609 (19%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y E ++ +DF+DL+ T L + + + + +IL+D Sbjct: 173 AAKMPALRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPD---VLARYQSQFRYILVD 229 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q ++ L ++ + + VGD+ QSIYSF GA+ +L ++ Sbjct: 230 EYQDTNFAQHSIVLQLAKE----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 279 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I++ + + + S Sbjct: 280 YP--------GTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIRKEVFS------------ 319 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + + I+ + + Sbjct: 320 ---------------EKERGEAIGVYQAYSDVEEGDI--------VINKIAELRRQE--- 353 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D +L R + + R + IKD++A Sbjct: 354 ------NYAYSDFAILYRTNAQSRVFEEAMR----KRSMPYRIYGGLSFYQRKEIKDVIA 403 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R ++ D+ +F ++ P + + KI +++ + + Sbjct: 404 YFRLAVNPNDEEAFKRIINYPARGIGDTTVSKITAAATDNNVSLWTVLCEPLTYGVNINK 463 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 K Q I I + ++ T I+ E + ++E Sbjct: 464 GTAGKLQGFRDLIAGFIEGVTEKNAYELGTEIIRQSGIINDVCQDNSPENLSRKENIEEL 523 Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 N E N+ +L + +SE+ + ++ +MTVH+AKGLE Sbjct: 524 ANGMGDFCAQRQEEGNANITLSDFLSEVSLLTDQDSDKDGDDA-KITLMTVHSAKGLEFK 582 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V ++F EE Sbjct: 583 NVFVVGMEEELFPSGMAGDSP----------------------------------KALEE 608 Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA D + + K + D ++ + + Sbjct: 609 ERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGNPSRFLKDIDVRFLKLPQDAGLSRRID 668 Query: 707 DEWIAYEWS 715 + +++ Sbjct: 669 ENAMSFRRE 677 >gi|126735359|ref|ZP_01751105.1| UvrD/REP helicase [Roseobacter sp. CCS2] gi|126715914|gb|EBA12779.1| UvrD/REP helicase [Roseobacter sp. CCS2] Length = 676 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 100/552 (18%), Positives = 182/552 (32%), Gaps = 117/552 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ + +DF D++++T + ++ A + + + +IL+DE QDT++ Sbjct: 76 ELYAEYQRRLRVLNAVDFGDILLHTVTIFQEN---ADVLERWRRTFKYILVDEYQDTNVA 132 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + + VGD+ QSIY + GAE +LR ++ Sbjct: 133 QYLWLRLLAD----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 176 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL V + + G + Sbjct: 177 --GAHVVRLEENYRSTPHILAAASGVIAANKGRLGKTLF--------------------- 213 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 S+ + ++ ++D + AR I + M I Sbjct: 214 -------TSRTDGEKVRLIGHWDGEEE-------ARWIGEEVEAMQRG-----TRGMSPI 254 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ +LVR + + + I+D+MA R +S Sbjct: 255 GLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDVMAYFRLAVSP 310 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484 EDDL+F ++ +P + + I E + + G+ + + Sbjct: 311 EDDLAFERIVNTPKRGLGDKAVQTIQRTARSNGVSLVEGARLVCQGKLLGGRGLKELTIL 370 Query: 485 IKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + A+ + + +IL + + E ++ L E + Sbjct: 371 VAGLDRWHGQVRAEADTHVELAEMILDESGYTGFWQNDKTPEAPGRLENLKELVKALENF 430 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + +V IMT+H AKGLE P VFL +F Sbjct: 431 EN--------LQGFLEHVSLIMDNETEEQGEKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 482 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 483 SQRS--------------------------------MDESGMKGLEEERRLAYVGITRAE 510 Query: 660 DQLIICKHSNTS 671 + + +N Sbjct: 511 EICTVSFAANRR 522 >gi|329124082|ref|ZP_08252629.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus aegyptius ATCC 11116] gi|327467507|gb|EGF13005.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus aegyptius ATCC 11116] Length = 727 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 277 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|73666864|ref|YP_302880.1| ATP-dependent DNA helicase Rep [Ehrlichia canis str. Jake] gi|72394005|gb|AAZ68282.1| ATP-dependent DNA helicase, Rep family [Ehrlichia canis str. Jake] Length = 639 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 107/551 (19%), Positives = 182/551 (33%), Gaps = 122/551 (22%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 T+A Y+E K +DF DL++ +L + I ++ +I++DE QD Sbjct: 166 TVALSTYHVYQERLKFLNCVDFGDLLLYNIQILTTQHD---ILSHYQEQFKYIMVDEYQD 222 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 + IQ+ +R L + + + L VGD+ QSIYS+ GAE +L+ Sbjct: 223 INTIQYLWLRLLAQKY----------KNLCCVGDDDQSIYSWRGAEVGNILKFSDDFPN- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++ L ++RST++IL V + + ++ G Sbjct: 272 -------AKVVRLECNYRSTSNILNVATAIINNNKSRLGKK------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + Q + W S A+ I I N Sbjct: 306 --LW---TTNEKGQKVNLMKFWDS-----------KAEAQYICEYIKNSHD--------- 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 Q + +LVR T + Y I D I+D++A + Sbjct: 341 ---YQFNETAILVRAGFQTRIFEEYF----IKYNIPYKIIGGTRFYDRQEIRDIIAYLKI 393 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480 + +D++F ++ P + + KI + T + + ++ Sbjct: 394 TANPNNDIAFERIINKPKRHIGASTLNKIYLCAKQNNTYFLNAAKLLVSGNQLSDKVSRS 453 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLR 538 H++ I S + +I + G I+ + E + L Sbjct: 454 LNHLLNKIDSWKESLLSDSISNTVKMIAYDSGYIDMLENEGENGLARIENIKELFSALLS 513 Query: 539 NEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 ++ LE + N+N IMT+H AKGLE P+VFL + Sbjct: 514 F--------NDVNEFLEHISLVTEMDSLDYNNNYTYIMTLHAAKGLEFPIVFLPGWEEGI 565 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 F H ++ EE RL YVG+TR Sbjct: 566 FPH--------------------------------EKSLQDRTGEALEEERRLAYVGITR 593 Query: 658 ASDQLIICKHS 668 A +QL I + Sbjct: 594 AREQLFISCAA 604 >gi|255535683|ref|YP_003096054.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium 3519-10] gi|255341879|gb|ACU07992.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium 3519-10] Length = 775 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 103/670 (15%), Positives = 201/670 (30%), Gaps = 131/670 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y +A KN +DF+DL++ TN+LL + + K +IL+DE QDT+ Sbjct: 176 AIYQKYVDACFKNGAMDFDDLLLRTNELLTRFPE---VLAKYQDRFRYILVDEYQDTNHS 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++++L F + VGD+ QSIYSF GA +L K+ Sbjct: 233 QYLIVKALASKFE----------NICVVGDDAQSIYSFRGANIFNILNFKKDYP------ 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + L ++RST +I+ + V S + S Sbjct: 277 --DAVTVALEQNYRSTQNIVNAANVVISKNVQQFKKNVFS-------------------- 314 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 D++ + + + S D+ A +A I + Sbjct: 315 -------DNEEGEKIKVYRSLSDADE--------ANFVASNIWEQHNS---------FQR 350 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + D +L R T R I +KDL+ R ++++ Sbjct: 351 KFTDFAILYRTNSQTRAFEDALR----RKNIPYRVFGGLSFYQRKEVKDLIGYLRLLVNE 406 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS---------KF 481 D + ++ P+ E K+ + ++ E + + K Sbjct: 407 NDAEALSRVINYPVRGIGETTQNKLIVFADKKNVSITEILGNLGHYAPELGLNNGILTKL 466 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538 I + + + + + + E ++ + E +N Sbjct: 467 SDFWAMIKAFQVMLKTENAYTVAMEVAKRSGLIKFLNDDQTPEGISRVENVQELMNSMQG 526 Query: 539 NEQN------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 + SL + + T ++V +MT+H +KGLE PVV LV Sbjct: 527 YIEEQQQLEDGDPSLSGFLENIALSADTQ-NDKKDGGDQVSLMTIHLSKGLEFPVVHLVG 585 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F L Y Sbjct: 586 LEENLFPSFMSSSTREEIEEERR----------------------------------LFY 611 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 V +TRA Q + D F ++ + ++ N + ++ + Sbjct: 612 VALTRAEKQAFFSYAV-----SRFQWGKITDAEPSRFLSEVDPQYLEFINPAIESRFVNH 666 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI---LNPSTIDTKGKTN 769 + + + ++ I + P+ ++ +NPS ++ Sbjct: 667 SGLKSSIFDDEPTAPRSFSKKAQKKTIERSEPQPVPQNLKPVATARIINPSGASSENIEV 726 Query: 770 LESLLSDNQT 779 + + D Sbjct: 727 GDQVRHDRFG 736 >gi|229844857|ref|ZP_04464995.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1] gi|229812238|gb|EEP47929.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1] Length = 726 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|209920268|ref|YP_002294352.1| exonuclease V subunit beta [Escherichia coli SE11] gi|209913527|dbj|BAG78601.1| exonuclease V beta subunit [Escherichia coli SE11] gi|324016326|gb|EGB85545.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 117-3] Length = 1180 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|219871258|ref|YP_002475633.1| DNA-dependent helicase II [Haemophilus parasuis SH0165] gi|219691462|gb|ACL32685.1| DNA-dependent helicase II [Haemophilus parasuis SH0165] Length = 727 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 109/581 (18%), Positives = 193/581 (33%), Gaps = 121/581 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 Y+EA + +LDF +L+I +L K + I + Q HILIDE QDT+ IQ Sbjct: 178 FYQIYQEACDRAGLLDFAELLIRAYELFKYNPL---ILQRYQQRFQHILIDEFQDTNNIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +++I L + VGD+ QSIY + GA+ + + R Sbjct: 235 YDLIHLLAG----------KTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN------ 278 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST IL + + + +N G + LW Sbjct: 279 --AQTIRLEQNYRSTGHILNSANALIANNDNRLGKN---------------------LW- 314 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + F+ L + AR +A I + Sbjct: 315 ------TDKGDGDPVDIYCAFNELDE-------ARFVASQIKQWKEDEG----------D 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 VL R + +I I + IKD +A R I +++ Sbjct: 352 FNQCAVLYRGNAQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 407 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ IQ + S + Sbjct: 408 DDAAFERVVNTPPRAIGDRTLDILRQLTRTRQITLWQAIQVAVQEEHLSGRSASALLRFV 467 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--- 539 + I+ L + + ++ + + G + I+ L+E + T + Sbjct: 468 ELINALEQETEEMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATRQFVKP 527 Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E + L ++ S + + V +MT+H+AKGLE P VF+V +F Sbjct: 528 DEAEEMTDLTAFLTHASLEAGET--QASLHQDYVELMTLHSAKGLEFPRVFIVGVEEGIF 585 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + +E RL YVG+TRA Sbjct: 586 PSGMSFD-----------------------------------EGRLQEERRLAYVGITRA 610 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L I + K + + + R +++ Sbjct: 611 KKKLTISYAESRRLYGKEERHLPSRFIGELPEEHIREVRLR 651 >gi|325287669|ref|YP_004263459.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] gi|324323123|gb|ADY30588.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] Length = 773 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 108/682 (15%), Positives = 222/682 (32%), Gaps = 127/682 (18%) Query: 92 KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150 K ++ ++ ++ I ++ FN + ++ + + +Y E K +DF+ Sbjct: 136 KYKQIQNRISSYKNSLITVKAYFNNPDLMEADAMAKRPRTGEIYKNYVERCFKAGAMDFD 195 Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210 DL++ TN+LL V + K +I++DE QDT+ Q+ ++++L++ F Sbjct: 196 DLLLKTNELLN---VFPEVLQKYQNRFQYIMVDEYQDTNHSQYLIVKALSDKF------- 245 Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270 + + VGD+ QSIYSF GA +L ++ ++ L ++RST +I Sbjct: 246 ---QNICVVGDDAQSIYSFRGANISNILNFQKDYDN--------VAMYRLEQNYRSTGNI 294 Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330 + + + +N ++ +++ + + Sbjct: 295 VNAANSIIEKNKNQLEKVVWTSN---------DDGPLIKVHRSITDAEEG---------- 335 Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390 R +A TIF + + VL R + I Sbjct: 336 ----------------RFVA---------GTIFETRMNEQLHNGEFAVLYRTNSQSRSIE 370 Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 R I IKD++A R +++ +D+ + ++ P + Sbjct: 371 DALR----KRDIPYRIYGGLSFYQRKEIKDVLAYLRLVINPKDEEALKRVINFPGRGIGQ 426 Query: 451 DDIFK-ICTQRHETETVYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHD 502 I K + T H +++E ++ + + + I + + Sbjct: 427 ATIDKLLVTANHYGRSMFEVMENIDKIELKINAGTKRRLTEFVNMIKGFQIMNKGADAFS 486 Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNEQNSYS------SLQELISE 553 + +F E ++ ++E LN + ++ E + + Sbjct: 487 LSEHVAKKTGILLEFKKDGTPEGIAKMENIEELLNGIKDFVEGQMELADATGNIAEFLED 546 Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + T + + V +MT+H AKGLE P VF+V +F Sbjct: 547 VALA--TDLDNDKGDDDRVALMTIHMAKGLEFPHVFIVGMEEDLFPS------------- 591 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK----HSN 669 + ++ EE RL YV +TRA Q + + Sbjct: 592 ---------------------AMSMNTRTELEEERRLFYVALTRAEKQAYLTYTESRYRW 630 Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729 R ++ N V K + I+K+ + + S + Sbjct: 631 GKLVDAEPSRFIEEIDEKYIENLTPVSNYKYKSLIDKNIFGEVDKSKLRQVKPVSGIPPS 690 Query: 730 IKQLMDEQKIPKKLFSPIKNDI 751 + + Q + P Sbjct: 691 APKPNENQLRKLRKLKPELAQP 712 >gi|254037871|ref|ZP_04871929.1| exodeoxyribonuclease subunit V beta [Escherichia sp. 1_1_43] gi|226839495|gb|EEH71516.1| exodeoxyribonuclease subunit V beta [Escherichia sp. 1_1_43] Length = 1180 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 122/877 (13%), Positives = 275/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGK--------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKT 885 + + ++ G ID + + ++ +YK+ Sbjct: 1024 YLPIIEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|329576879|gb|EGG58364.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1467] Length = 604 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 94/513 (18%), Positives = 179/513 (34%), Gaps = 92/513 (17%) Query: 112 DRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 + K+ + + + Y++ +KN +DF+DLI+NT L ++ + Sbjct: 5 ELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT---L 61 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + ++I +DE QDT+ Q+ ++ L F + L VGD QSIY + Sbjct: 62 AFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYGWR 111 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA+ + +L ++ S+I L ++RST +IL + V N + Sbjct: 112 GADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK--- 160 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 +LW + ++ + + + I Sbjct: 161 ------------------ELW-------TENIDGEKIVYYRGDTERDET-------QFIV 188 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I + + D VL R + ++ + I Sbjct: 189 SQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVGGH 235 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469 D IKD++A I + +D +SF ++ P + I K+ + E Sbjct: 236 KFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALLEA 295 Query: 470 IQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 Q + + + I +L + + + L R+ +++ E Sbjct: 296 AQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNNLE 355 Query: 525 ---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSANHN 570 ++ LDEFL+ T ++ + L + +++L + + Sbjct: 356 SQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEESSS 413 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 +V +MT+H AKGLE PVVFL+ VF Sbjct: 414 QVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 446 >gi|194439867|ref|ZP_03071931.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 101-1] gi|253772326|ref|YP_003035157.1| exonuclease V subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162748|ref|YP_003045856.1| exonuclease V subunit beta [Escherichia coli B str. REL606] gi|194421204|gb|EDX37227.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 101-1] gi|242378368|emb|CAQ33146.1| recB, subunit of RecBCD [Escherichia coli BL21(DE3)] gi|253323370|gb|ACT27972.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974649|gb|ACT40320.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli B str. REL606] gi|253978814|gb|ACT44484.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli BL21(DE3)] gi|323960737|gb|EGB56360.1| exodeoxyribonuclease V [Escherichia coli H489] gi|323971651|gb|EGB66881.1| exodeoxyribonuclease V [Escherichia coli TA007] Length = 1180 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQIGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|170726988|ref|YP_001761014.1| exodeoxyribonuclease V subunit beta [Shewanella woodyi ATCC 51908] gi|169812335|gb|ACA86919.1| exodeoxyribonuclease V, beta subunit [Shewanella woodyi ATCC 51908] Length = 1229 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 146/970 (15%), Positives = 302/970 (31%), Gaps = 132/970 (13%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 K +WP + + + L KK + + + + S Sbjct: 234 LKLIWPRERENIEALLHALPL----NGVRFGKKPDGYPKLAVMLDAMDNWCKFSDSLPPM 289 Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 K ++ ++NK E Q + +R + + ++ Sbjct: 290 KVMESLSLSELKLNKGG----EIPTPEQAPVLDHIERLCSLINDFIPSFLYCAREGISRR 345 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-------WIRYKIDQEINHILIDEVQDTS 189 + + K + +L +DL+ L+ + + I + LIDE QDT Sbjct: 346 FIQQKSERNLLTPDDLLTTLEQALRPNEHGESTLANTAQLAATIAKRFPVALIDEFQDTD 405 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPR-TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 +Q+ + + + + +L +GD KQ+IY+F GA+ ++ + Q Sbjct: 406 PLQFAIFSRIYQMQANIPAKAGAGNLSLLMIGDPKQAIYAFRGADIHTYIQARTQTQDHY 465 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 L ++RS+ +++ V+ +F ++ + + Sbjct: 466 N----------LDTNYRSSRNMIVGVNALFENRDDPFISQAIPFEPVHPSPFADKK---- 511 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + S D + L + ++ LA A I ++ Sbjct: 512 ---VFIESGGDDSALKIKLLSEDPEKGLNKTTARKRLAEDAAAEICRLLTQSQAGECSIS 568 Query: 369 -RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + ++AKDI VLVR R + + + +D +I V R + + L +++ + Sbjct: 569 GQPLKAKDIAVLVRDRNEAA----VIKQSLSDRQIGAVFLSRDSVFNTLEAREMALVLHA 624 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 + + +D+ + L + L F I +T+ E + + + Sbjct: 625 LATPKDERALRSALATSLLGFDALSIHSFNQDEMVRQTLLEQFDELHKNWLRR-----GV 679 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + L+++A +L + G ++ L E L + + Sbjct: 680 MPALLNLANETK---LIERLLQDEDGERRLTD------FRHLAELLQQ----KATELDGI 726 Query: 548 QELISELEQ------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L++ EQ + + N V+I+T+H +KGLE PV F+ Sbjct: 727 SALVNWYEQALIENNANEEAQLRLESEQNLVQIVTIHKSKGLEYPVCFIPFVSLA----- 781 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + P L + +W + K+ E RLLYV MTR Q Sbjct: 782 RDNRRKPAPMLYHENNKLVWDIAQSDEG------WERHKRENLAEDLRLLYVAMTRPVYQ 835 Query: 662 LIICKHSNTSNEKKSNQRTWYD-----MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + +++ KK+ + + +I+ ++ I+ Sbjct: 836 CYLYVANHSRFTKKAGITSQLHETGIGYLLGIEDKACEFSRIQSQAQKLMEQAISVIQMG 895 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIK----------------NDINEPYILNPS 760 PL+ I+ + +++ +KL++P + + Sbjct: 896 DDASTQPLDNISDIELKLAPKELKRKLYTPWRVGSYSGLVKDLPHEHIAPGADDEAFPEL 955 Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 I S + + N G +H +L++I P+ + + I Sbjct: 956 EIIQDEVDPTPSRFTFERGANAGSFMHLVLELI-DFPQAETELPIHLPIAMEKYGIDESW 1014 Query: 821 YKNLLLSITRLLENP-------MMTTAMSCDSYSEVSVSGKINCPKK------------- 860 Y+ L + LL +P + E+ IN Sbjct: 1015 YEVLNIWYRDLLASPLVADGSLKLAQLAHAQKLVEMEFYLPINQLIAVKLNTLLETHGYS 1074 Query: 861 --------DIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQ 903 ++ G ID Q +I +YK++H + + + Q Sbjct: 1075 AGLNFESLKGMLKGFIDLTFEHQGQFYIADYKSNHLGDDVSHYGFDAMKGAIRSHRYDLQ 1134 Query: 904 LSIYEKILKD 913 IY L Sbjct: 1135 YIIYTLALHR 1144 >gi|315109404|gb|EFT81380.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2] Length = 1072 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 149/995 (14%), Positives = 298/995 (29%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + D LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQSVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + I Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|291618660|ref|YP_003521402.1| RecB [Pantoea ananatis LMG 20103] gi|291153690|gb|ADD78274.1| RecB [Pantoea ananatis LMG 20103] Length = 1179 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 151/975 (15%), Positives = 291/975 (29%), Gaps = 147/975 (15%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEER 65 + N K W V + + + + L A+ Q A + Sbjct: 224 AANLERINALKQQWQAASADVEGLISASGVDKRSYSSKHLPNWVAKVTQWAQSETLDYQL 283 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L F + T++ L + + + E + +RD Sbjct: 284 PKELERF-----GQQVLHEKTKKGEAPQHALFDAVDRFLAEPLTLRDVI----------- 327 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + K++ +L F+DL+ ++ L++ A + I LIDE Sbjct: 328 IWQALTEVREAVQREKRQRALLGFDDLLSRLDEALQQPG-GALLAETIRGRFPVALIDEF 386 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT Q+ + R+L H L +GD KQ+IY+F GA+ LR + Sbjct: 387 QDTDPQQYRIFRTLY--------LHQPELALLLIGDPKQAIYAFRGADIFTYLRARSEVS 438 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 T L ++RS+ ++ V+++FS ++ S + + Sbjct: 439 AHYT----------LDTNWRSSPGMVDSVNRLFSQVDSPFLFSSIPFLPVSPAAPNQA-- 486 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---- 361 + + Q P W + + +A++ A IS + Sbjct: 487 --------LKLIYQQQPQPALRFWLQPGEGVGVSDYQQFMAQQCAADISRWLVAGQQGQA 538 Query: 362 -IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 I + ++A DI VLVR R + LI L SV + R + ++ Sbjct: 539 LIGKGDALQPVKASDITVLVRSRNEASLIRDALNSLSIP---SVYLSSRDSVYTTPEARE 595 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 L+ L + + S E + L + +F ++ + + + E Sbjct: 596 LLWLLQAVQSPEQERLLRSALATSIFAIDAAELDALAQNERHWDALVEQFV--------S 647 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---L 537 +Q + L + +L + G ++ L E L L Sbjct: 648 WQQIWHQRGVLPMLRDVMITRQLAENMLASDNGERRLTDLM------HLGELLQEAAVQL 701 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + L + I+ + + + ++ + V+I+T+H +KGL+ P+V+L Sbjct: 702 DSTHALVRFLAQQIARPDSQAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAG-- 759 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + ++ E RLLYV +TR Sbjct: 760 -----------FRESASALYHDRESFAAMLDVQGDEYSLTLAEEERLAEDLRLLYVALTR 808 Query: 658 ASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL-------TNSI 704 + +I + E ++ +V D L I Sbjct: 809 SVHHCSVGIAPLIKGARKKAGESDLHKSALGFLVQRGEIADAAQLSQHLQALEGAGIEVI 868 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + W N L E + L D ++ L ID Sbjct: 869 SSALQPGAIWHEGQGSNDALSSREMTRALADSWRVTSYSGLQQHGSSPLLDALPKFDIDA 928 Query: 765 KGKTNLES-----LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 G+T E + G +H L + I + ++ +N Sbjct: 929 AGETADEEDTLLTPHHFPRGAAPGTFLHGLFESIDFTEPPE-ALWLEDQLQQNGYSLS-- 985 Query: 820 EYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK------------------- 854 + I R+L P+ + + S D E+ Sbjct: 986 WLPVIQQWIARVLTTPLNKEGVTLASINSRDRLIEMEFYLPINNLLTATDLDALVRRYDP 1045 Query: 855 -------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY--------- 898 ++ + ++ G ID + Q ++ +YK++ + P Sbjct: 1046 LSQRGPALDFRQVKGMLKGFIDLVFRWQGKYYLLDYKSNWLGESHAAYTPEAMEQAMIDH 1105 Query: 899 THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1106 RYDLQYQLYTLALHR 1120 >gi|206579213|ref|YP_002241124.1| DNA helicase II [Klebsiella pneumoniae 342] gi|288937764|ref|YP_003441823.1| DNA helicase II [Klebsiella variicola At-22] gi|206568271|gb|ACI10047.1| DNA helicase II [Klebsiella pneumoniae 342] gi|288892473|gb|ADC60791.1| DNA helicase II [Klebsiella variicola At-22] Length = 720 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483 + DD +F ++ +P + + + R T+++ ++ A S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLKEKVLAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTS 671 +L + Sbjct: 607 MQKLTLTYAETRR 619 >gi|323357219|ref|YP_004223615.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323273590|dbj|BAJ73735.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 826 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 127/809 (15%), Positives = 239/809 (29%), Gaps = 144/809 (17%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-LTQ 76 ++ +P ++ NK E + I +KA + ++ + F T+ Sbjct: 79 REAYPSQILAITFTNKAAGEMRERVHQLIGQKADGMWISTFHSACVRILRREAEQFGFTK 138 Query: 77 KFTPQKNIITQEINKKS------PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 FT + ++ + K+ +Q K+++ + + + A Sbjct: 139 AFTIYDSGDSRALIKRLVKEHEGDSFGLTPAGTQSRISKLKNELADAESYARSANMSDPA 198 Query: 131 KYLNAH----YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + Y+ ++ DF+DLI T L + + + + HIL+DE Q Sbjct: 199 ERIFVEIFSSYQRELQRANAFDFDDLIAQTVYLFR---AFPQVADRYRKRFRHILVDEYQ 255 Query: 187 DTSLIQWEVIRSLTE-------------------DFFVGKNTHSSPRTLFAVGDEKQSIY 227 DT+ Q+ +I LT D G T +L VGD QSIY Sbjct: 256 DTNHAQYALIHELTRPVGSDAEPFSSGGMMIFDADPSTGSGTDGGAASLTVVGDSDQSIY 315 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA+ + + +R ++ L ++RST +IL+ + V S + + Sbjct: 316 AFRGADIRNISEFERDYP--------GAKVVLLEQNYRSTQNILSAANAVISNNFDRKDK 367 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW D +T S A+ Sbjct: 368 K---------------------LW------TDVGAGDPIIGFT--------GYSQHDEAQ 392 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A I + + I V R + + + + Sbjct: 393 FVADEIEALHKKG----------VDYSGIAVFYRTNSQSRALEEIF----IRSAVPYKIM 438 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466 + IKD +A + + D +S +L P + I T Sbjct: 439 GGTKFYERAEIKDALAYLVAVANPADGMSVRRILNRPRRGIGDVTETAIARYAAEHDITF 498 Query: 467 YEYIQKFANC-GISKFQHVIKYIHELI------------HIAQFCSPHDFFTLILGAKKG 513 + + A K Q I + ++ +A S + TL+L Sbjct: 499 RDALANSAQIGVGPKLQKAIDQLDAVLTEATAIMLPASGELAPSTSVTEGLTLLLNKSGY 558 Query: 514 RQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANH 569 + + ++ LDE + T +N+ + + ++E+ ++ Sbjct: 559 FDALRASKDPQDEARLENLDELIAVTREFARNNPEGTVIDFLTEVTLVADADDLDDASGS 618 Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629 V +MT+HTAKGLE VFL + H+ P Sbjct: 619 --VSLMTLHTAKGLEYDAVFLTGVEEDLLPHRISANEPGGP------------------- 657 Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689 +E RL YVG+TRA +L + + + + + Sbjct: 658 ---------------QEERRLFYVGITRARKRLHVSLAMTRAQFGEVTVAMPSRFLQEIP 702 Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749 + ++ + + P L+ K S N Sbjct: 703 ADLIDWRQSPGDVNGRGGSQSRALNARGRRPGQPGGGSRYGDDLVPLPKRAPADPSKFPN 762 Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQ 778 I N + G + + Sbjct: 763 RIPAKVRDNGDMVLASGDRIRHDDFGEGR 791 >gi|289677452|ref|ZP_06498342.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae FF5] Length = 727 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 118/661 (17%), Positives = 214/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKIG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|111023339|ref|YP_706311.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822869|gb|ABG98153.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 1115 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 143/1063 (13%), Positives = 273/1063 (25%), Gaps = 214/1063 (20%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 + + + +LW L + VS + + + T A + Q A ++ Sbjct: 134 LPIEPSATLLS-ETELWQLAHRVVSSWDGDLDTDRNPASVTEAVLALSGQLAEHLVEPDD 192 Query: 65 RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 L T P++ +L + L + Sbjct: 193 LREAHTELDKLVHTLPAGPRQRGGP------GKELLDILDTQHRRVELL----------- 235 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 L + ++ LDF + + + +L Sbjct: 236 ----------PLVQRLADTLRREGALDFGSQMSLAARVAADHPE---VGLAERTRFRVVL 282 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT Q ++ SL G+ L AVGD QSIY + GA + R Sbjct: 283 LDEYQDTGHSQRVLLSSLFGGGLDGELA------LTAVGDPMQSIYGWRGASAANLPRFA 336 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 G +EL S+R+ + L + + + L E + R+ Sbjct: 337 TDFP---LANGDPAPTLELLTSWRNPPEALALAN------MASASLRERGVSVSTLRARP 387 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 G V+L + +A I+ Sbjct: 388 QAVPGDVRLALTGDVVQER--------------------------EWVADRIAE------ 415 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +++ R VL+R+ D I + R + V L + D+ Sbjct: 416 QYADATSRGEDPPTAAVLIRRNADAAPIAEVLRS----RGLPVEVVGLGGLLHTPEVADV 471 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481 +A+ R + + V ML + D+ + + E Y A S Sbjct: 472 IAMLRVVADPMAGSAAVRMLTGARWQIGAADLTALSRRASELAIGTGYGTTGAVTDSSAL 531 Query: 482 QHVI---------------------------------------KYIHELIHIAQFCSPHD 502 + + L + Sbjct: 532 ADAVGQALPGEHAEQAGLADALADPGPAERYSQVGYARITAVAAELASLRERIGQ-PLTE 590 Query: 503 FFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557 + A + +R G+ + LD F + + +++ L++ L Sbjct: 591 LVAEVERALGIGIEAQARTRRSARGSAGREHLDAFADVVAGYASRTSATVTGLLAFLSAG 650 Query: 558 PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + + V+++TVH+AKGLE VV + + VF + + Sbjct: 651 ESVEKGLAPGEVEVDPHRVQVLTVHSAKGLEWEVVAVPHLTAGVFPSRTASGSWLGAVGE 710 Query: 614 DDPGIPIWIPQ------------------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 P + + K V L +E RL YV + Sbjct: 711 LPPSLRGDRARPGESADGVPVLELENLYDRKDLEEAVKAHKAALAARKLDEDRRLFYVAL 770 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWY-------------------DMVYDSFHNDERVK 696 TR L H + + + + D+ + DE+ Sbjct: 771 TRTERVLFASGHHWAESGTEPKGPSEFLTELRDTVTDEEHEGIGIVDIWAPAPEPDEQNP 830 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK--------------- 741 S L + Sbjct: 831 LTSTPKSAVWPRDPLGLRRESVERGAALVVAALKRAGAPTPAGEDDDPENWAADVDALLA 890 Query: 742 --KLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQ 791 + + + ++ P L+ S + N RG H ++ Sbjct: 891 EREARANARTEVVLPGQLSVSQLVELEADPDALAARLRRPLPFPPNPLARRGTAFHAWVE 950 Query: 792 VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851 R+ T + L A + + L++ + ++ + + +EV Sbjct: 951 ---------RRFGATRLLDLDE-LPGAADTDAGPDTDLATLQDAFLRSSWADRNPTEV-- 998 Query: 852 SGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 ++ GRID + + ++KT E + QL+ Y Sbjct: 999 EVPFETSVAGTVLRGRIDAVFTDPDGGWTVIDWKTGAEPSAANEKAV---VMQLAAYRLA 1055 Query: 911 LKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951 + P + + YV + A A + Sbjct: 1056 WAELMDVPIERVRAAFHYVRTGRTIAPDHLPDADALARLLRSA 1098 >gi|308176361|ref|YP_003915767.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117] gi|307743824|emb|CBT74796.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117] Length = 792 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 108/638 (16%), Positives = 205/638 (32%), Gaps = 129/638 (20%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K + I K LK +L D + + + Y Sbjct: 153 KRFTPKAIAHKISSLKNEL----------IDDEDYASTINANDPFSRAVSEVYRGYTRRL 202 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 + +DF+DLI + + + + H+LIDE QDT+ Q+ ++R LT Sbjct: 203 RAANAMDFDDLIGQVVYMFR---AFPRVADNYRRRFRHVLIDEYQDTNHAQYSLVRELT- 258 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 G ++P L VGD QSIY+F GA+ + ++ ++ + I+L Sbjct: 259 ----GVEGDTTPGELTVVGDSDQSIYAFRGADIRNIIDFEKDYPN--------AATIKLE 306 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RST IL+ ++V + LW + Sbjct: 307 QNYRSTQTILSAANEVIKRNPDRNDKK---------------------LW-------TAS 338 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + ++ + S S AR IA I + D ++ D+ + R Sbjct: 339 GDGEKITGYV-------GESESDEARWIAEEILRLNDDDE---------VRPGDVAIFYR 382 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + + D IKD +A R +++ +DD++ +L Sbjct: 383 TNAQSRALEEQL----MRVDLKYRVVGGTRFYDRKEIKDALAYLRALVNPDDDINVRRIL 438 Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494 P + + + + + +++ GI + + +L + Sbjct: 439 NEPKRGIGDRAEGAVAALAERDRISFMDALRRSDEAPGLGTRGIKMTAAFVSMMDDLKTV 498 Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS-SLQEL 550 A+ P + +L + + ++ L E + + L+ Sbjct: 499 AEGSGPAEALEAVLEQTGYLETLRLSSDPQDESRVENLAELVAVVRDYVNDEPEGGLEGF 558 Query: 551 ISELEQYPPTIKRAHSANHNE----------VRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + + + + +E V +MT+HTAKGLE PVVFL VF H Sbjct: 559 LERVALVADADQIPEAPSDDEGAAMAAQEGVVTLMTLHTAKGLEFPVVFLTGMEHGVFPH 618 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + E RL YVG+TRA + Sbjct: 619 Q----------------------------------RSMTDEKELAEERRLAYVGLTRARE 644 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 +L + + S ++ + + K+ Sbjct: 645 RLYLTRAEQRSLWGQAQYNPASQFLEEVPSELIDWKRE 682 >gi|145635037|ref|ZP_01790743.1| DNA helicase II [Haemophilus influenzae PittAA] gi|145267645|gb|EDK07643.1| DNA helicase II [Haemophilus influenzae PittAA] Length = 726 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 192/551 (34%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + + Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDFKT------ 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RSTA+IL +++ + + G + LW Sbjct: 278 ---ETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|146313611|ref|YP_001178685.1| DNA-dependent helicase II [Enterobacter sp. 638] gi|145320487|gb|ABP62634.1| ATP-dependent DNA helicase UvrD [Enterobacter sp. 638] Length = 720 Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats. Identities = 101/581 (17%), Positives = 184/581 (31%), Gaps = 116/581 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRMLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST +IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTNNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGVDGEPISIYCAFNELDE-------ARFVVNRIKTWQDNGGALEK----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQVSMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQAARERQLTLWQSCRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 I+ I L H ++ R + G I+ L+E + T + Sbjct: 461 FIELIDALAQETADMPLHVQTDRVVKDSGLRMMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 ++L + K + + +++ Sbjct: 607 MEKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLR 647 >gi|85708952|ref|ZP_01040018.1| DNA and RNA helicase [Erythrobacter sp. NAP1] gi|85690486|gb|EAQ30489.1| DNA and RNA helicase [Erythrobacter sp. NAP1] Length = 771 Score = 277 bits (708), Expect = 7e-72, Method: Composition-based stats. Identities = 109/640 (17%), Positives = 191/640 (29%), Gaps = 121/640 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y++ K DF DL+++ ++ +K + Q +IL+DE QDT+ Sbjct: 189 AEFYRLYQDRLKALNACDFGDLMLHMLNIFRKH---TDVLADYQQRFKYILVDEYQDTNA 245 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ +R L + S + + VGD+ QSIYS+ GAE +LR ++ Sbjct: 246 VQYLWLRLLAQ----------SHKNICVVGDDDQSIYSWRGAEVANILRFEKDFP----- 290 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ L ++RST IL + + L Sbjct: 291 ---GAHVVRLEQNYRSTPHILGAASGLIRANSQRHEKT---------------------L 326 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + W + + ARR++ I + Sbjct: 327 W---TEVNGGDKVRVIGVWDAPEE-----------ARRVSEEIERLEREGAPLDQ----- 367 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +LVR + T I+ F + I+D +A R I Sbjct: 368 -----VAILVRAQYQTREFEDRF----IQTGINYRIIGGFRFYERAEIRDALAYLRVIAQ 418 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHV----- 484 +DDL+F + P + K+ R + + A+ + Sbjct: 419 PQDDLAFERIYNQPKRGLGAKTLEKMHQHARRVGMPLAAASLELADSDELPKRAANTIGS 478 Query: 485 -IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 ++ ++ +P D L+L + E + L E E Sbjct: 479 LMRSFLAWREASEQMTPSDLLRLVLDESGYNDMLAADRSAESAGRAENLSELARAMEEYE 538 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L LE + + V IMT+H AKGLE VF V VF Sbjct: 539 T--------LGDFLEHVSLVMDNDRGDEEDTVTIMTIHAAKGLEFDHVFCVGWEEGVFPS 590 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + I ++ EE RL YV +TRA Sbjct: 591 QR--------------------------------AIDEGGLASLEEERRLAYVAITRARR 618 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 + +I +N + + + ++ +T + E Sbjct: 619 RCMILHAANRRIYGQWTSSIPSRFIEELPEEH-IEQETTMTGGASLWRANWSENEDPFAH 677 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 + + Q+ + P + + EP S Sbjct: 678 VARDRPDRAQARGPGWQRAVATGYEPRQKRVAEPGRSAAS 717 >gi|157373608|ref|YP_001472208.1| DNA-dependent helicase II [Shewanella sediminis HAW-EB3] gi|157315982|gb|ABV35080.1| DNA helicase II [Shewanella sediminis HAW-EB3] Length = 721 Score = 277 bits (708), Expect = 7e-72, Method: Composition-based stats. Identities = 101/597 (16%), Positives = 198/597 (33%), Gaps = 116/597 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+E+ + ++DF ++++ ++L + + +IL+DE QDT+ I Sbjct: 172 QIYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---VLQHYQDRFKNILVDEFQDTNAI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + VGD+ QSIY + GA+ + + + K Sbjct: 229 QYAWIRVLAGD----------SANVMIVGDDDQSIYGWRGAQVENLHKFLVDFPK----- 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST IL +++ + G LW Sbjct: 274 ---AETIRLEQNYRSTGHILKASNELIANNPERLGKK---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + +Q S F+ + + AR I I++ Sbjct: 310 -------TEDKDGEQISLYCAFNEMDE-------ARFIVGRINDWHDMGGDL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +L R + ++ ++ + IKD M+ R I ++ Sbjct: 348 --SSCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMSYLRLINNK 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484 +DD +F ++ +P + + T R + T+++ + + + + Sbjct: 402 DDDAAFERVVNTPARGIGGRTLDILRSTARQQELTLWQTCLRALEEKLLSGRAANAVRGF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-E 540 + I E+ + H ++ + + + G + + LDE + Sbjct: 462 MDLIVEMQQDTDEMTLHRTTDHVIRESGLKAMYEAEKGEKARSRVENLDELVTAARTFIM 521 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + EL + L + A + V++MT+H+AKGLE PVVF+ +F Sbjct: 522 PEDSEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPVVFMSGVEEGIFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + +E RL YVGMTRA Sbjct: 582 SQMAMDEG----------------------------------DRLDEERRLCYVGMTRAM 607 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 ++L I + N + + ++K + + ++ ST Sbjct: 608 EKLYITYAETRRIYGRENFARPSRFIKEIPTEHVEEIRLKTQVTAPQRAKPSFSRST 664 >gi|134097674|ref|YP_001103335.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|291006367|ref|ZP_06564340.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133910297|emb|CAM00410.1| probable ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 1078 Score = 277 bits (708), Expect = 7e-72, Method: Composition-based stats. Identities = 139/1047 (13%), Positives = 275/1047 (26%), Gaps = 199/1047 (19%) Query: 4 RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63 R + W L + VS + + T + + A + Sbjct: 130 RVPVEPGARLLT-ETAAWQLAHRVVSTWTEDLDTDKVPSTVTGYLLSLAGELAEHLVRPD 188 Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 + + + T + P+ E+ K + +T Sbjct: 189 DLRAHAEALCRTIENAPRAKRQKAELPKDLQKVV------------------------AT 224 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 L A Y + K++ +DF D + L + + + +L+D Sbjct: 225 QRLRVALLPLLAEYAQRKRREAAMDFADQMSLAAGLAAEHP---EVVAGERERFGAVLLD 281 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT Q ++RSL + +VGD Q+IY + GA + R Sbjct: 282 EYQDTGHAQRVLLRSLFG--------QGRTMPVTSVGDPAQAIYGWRGASAANLPRFTTD 333 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 K + L SFR+ ++L V + V + Sbjct: 334 FPKDSMA---PARRYGLLTSFRNPPEVLRVANAVSA------------------------ 366 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + ++ + + +A I+ + Sbjct: 367 --------PLREAGLEVEELRAKDGAEAGDIRVALADDVRQERDWVADRIAA------QW 412 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + VLVR+R D + R D + V L D ++DL++ Sbjct: 413 HAALDENGRPPTAAVLVRRRADMADLAAALR----DRGLPVEVVGLGGLLDEAEVRDLVS 468 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI------------ 470 R ++ + + +L + DI + R E + Sbjct: 469 ALRMLVDPLAGTAAMRLLTGSRWRLGAADIAALWDRARELGERAFGAPESEDPTAAVAAA 528 Query: 471 ---------------------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 ++++ G + + + + + L + + Sbjct: 529 LPGEHAEQAGLVDALDDPGNAERYSEPGYQRIRRLGRELANLRRRL-EQPLPELVADVER 587 Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQY----PPTIKRA 564 + +SR G LD F + S ++L L+ L Sbjct: 588 TLLLDIESLSRPGGAGRIHLDAFADVVTDFATASPSATLPALLDYLAAAERAEDGLEPGE 647 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM-------------PS 611 + V+++TVH AKGLE VV L VF K + Sbjct: 648 VEVADDRVQVLTVHAAKGLEWEVVALPHLVRDVFPGKRKASSWLRAVTELPARLRGDAQD 707 Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 L + K + + E RLLYV +TR+ L++ H Sbjct: 708 LPRLDLDRLQGMDRKEIVEALEAHDDEFEDRRLTEERRLLYVAVTRSERSLLLSGHWWAE 767 Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----- 726 K + + + V ++ + ++ P++ Sbjct: 768 GGDKPKGPSDFLLQLAEVVKSPDVGVVEQWSPQPPEDAPNPLAEAVRSAEWPVDPLGTRR 827 Query: 727 ----------------------------------EETIKQLMDEQKIPKKLFSPIKNDIN 752 + + + + ++ P ++ Sbjct: 828 DAVAEGANLVLAALDAVDSAAPDEEDEDGWARDVDVLLAERAAAARRRDQVRLPEHLSVS 887 Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812 + L + N RG H L+ FT Sbjct: 888 QLVELADDADALARRLRRPLPYPPNPMTRRGTAFHSWLEHRFTSTA-------------- 933 Query: 813 AKLWPAKEYKNLLLSITRLLEN-PMMTTAMSCDSYSE---VSVSGKINCPKKDIIISGRI 868 L E ++ M+ A S++E V + +++ GR+ Sbjct: 934 --LLDFDELPGAADESATPHDDLEMLQQAFLAGSWAERTPHRVEVPFETQVEGVVVRGRM 991 Query: 869 DQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLI 925 D + + ++KT + QL+ Y P + + Sbjct: 992 DAVFADSDGGWTVVDWKTGAVPAGD---QVRALSVQLAAYRLAWSALSGAPLEKVRAAFH 1048 Query: 926 YVSEPKVFIIPQNKLNKAFAEISTKIP 952 YV + + E+ +P Sbjct: 1049 YVRHDRTLRPADLLDAEGLRELLRSVP 1075 >gi|296327497|ref|ZP_06870043.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155323|gb|EFG96094.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 739 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 106/546 (19%), Positives = 182/546 (33%), Gaps = 117/546 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y A ++ +DF D+++NT LL+K + I K+ + +I+IDE QDT+ + Sbjct: 171 EVYDKYNRALLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 226 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I + L VGDE QSIY F GA +L + Sbjct: 227 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYNN----- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I++L ++RST IL +++ ++++ LW Sbjct: 272 ---AKIVKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 307 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + S RI I + Sbjct: 308 -------TQNGKGDLIKVLACDNGRDEVS-------RIIEFIRENHQNG----------V 343 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +D+ +L R + + Y I IKD++A I++ Sbjct: 344 AYRDMTILYRTNAQSRIFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 399 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484 +D+L+ ++ P E I KI R + E + G K + Sbjct: 400 QDELNLQRIINVPKRKVGEKGIEKIITYARENNLNLLEALSHIKEISGLTVVGKEKLLEM 459 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542 I EL ++ + ++ K + I+ +DEF N L E Sbjct: 460 YDIIKELKDLSYTETTSYIVQTLIDKIKYIDYIKDNYDDAEARIENIDEFKNSILELE-- 517 Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L LE + + V++MT+H +KGLE P+VFLV +++F Sbjct: 518 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGT 577 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA + Sbjct: 578 ----------------------------------RAMFDEKEMEEERRLCYVALTRAEKK 603 Query: 662 LIICKH 667 L + Sbjct: 604 LYLSHA 609 >gi|145633082|ref|ZP_01788814.1| DNA helicase II [Haemophilus influenzae 3655] gi|144986308|gb|EDJ92887.1| DNA helicase II [Haemophilus influenzae 3655] Length = 726 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|46445668|ref|YP_007033.1| ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|46399309|emb|CAF22758.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 761 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 104/582 (17%), Positives = 186/582 (31%), Gaps = 121/582 (20%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159 ++ + + + N + + T ++ A Y++ ++ +DF+DL+ T + Sbjct: 171 FRQMISQAKNMLQQPNPHYDKEVTSDFDEAFPHVYALYQKKLQEYQAVDFDDLLFLTAKI 230 Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 ++ + +LIDE QDT+ +Q+ + L E R LF V Sbjct: 231 WREYPS---VLNYYQDRWPFVLIDEYQDTNAVQYTMTTLLVE----------KRRNLFVV 277 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD QSIYS+ GA + +L +R +I+L ++RS +IL + + S Sbjct: 278 GDPDQSIYSWRGANVQNILNFERDYP--------GAKVIQLEQNYRSRTNILNAANALIS 329 Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 N +LW ++ + + L Sbjct: 330 HNTNRFEK---------------------ELWSELGAGEKVK--------------LFIG 354 Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399 A +A I + K+ I ++++ R + + Sbjct: 355 DDDRAEAEFVASQI---------SYHHKEHQISLSEMVIFYRTNAQSRVFEDYL----LY 401 Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459 I V IKD++A RF S D ++F + P E I KI Sbjct: 402 RGIPYVIVGGISFYQRREIKDILAFLRFAQSGADFVAFARTINLPKRGLGETTIEKIRQS 461 Query: 460 RHETETVYEYIQK-------------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506 +E + + + EL +++ S + Sbjct: 462 ANEERMTIYAFCEALLKNTPMKSIVRLTAKQREGLTEYLAIVQELRTLSKAGSVRELVLA 521 Query: 507 ILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR 563 + K + + + LDE + + E + SL+ + EL Sbjct: 522 AIEKTKYLNYLMEDKESYEDRRENLDELITKAVEWEISATDPSLEAFLEELSLKSSLD-- 579 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + + +MT+H KGLE FLV +F H + K Sbjct: 580 EANQAVERLSLMTIHNGKGLEFTTTFLVGLEEDLFPHVNSKN------------------ 621 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + EE RL YVG+TRA + L + Sbjct: 622 ----------------NREDVEEERRLCYVGITRAKEYLYLS 647 >gi|254292798|ref|YP_003058821.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] gi|254041329|gb|ACT58124.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] Length = 793 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 112/654 (17%), Positives = 194/654 (29%), Gaps = 125/654 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+ + DF DL+++ + +K I + +IL+DE QDT++ Sbjct: 199 EIYKTYQHRLRVLNACDFGDLLMHCIAIFQKSPD---ILADYHKRFKYILVDEYQDTNVA 255 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 256 QYLWLRLLAQ----------GTGNICCVGDDDQSIYGWRGAEVDNILRFEKDFP------ 299 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RSTA IL + + ++ G + Sbjct: 300 --GAKVIRLERNYRSTAKILACASHLITANQDRLGKTLH--------------------- 336 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + +D + AR I I + + Sbjct: 337 -------TEDEDGDAVKVRGLWDGEAE-------ARLIGEDIESWRSSGR---------- 372 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + + V+VR L L I + I+D MA R I S+ Sbjct: 373 KYAECAVMVRASWQMRLFEERFIML----GIPYKVIGGPRFFERAEIRDAMAYLRLIRSE 428 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHV 484 DDL+F ++ P I KI E E + + + + Sbjct: 429 NDDLAFERVVNQPKRGVGATSIQKIQVVAREMERPLTVTAEIMLRGNEIRGKAQTGIRAF 488 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + + A+ +IL + + + L E + E Sbjct: 489 LNDLERWRAQAREMEHPRIMEIILDESGYTAMLKADKTPQAQTRLENLKELVRAMGEFE- 547 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 SL + +E + + ++V+I+T+H AKGLE P VFL +VF K Sbjct: 548 ----SLNAFMEHVELVMDAS--QGNESDDQVQILTLHGAKGLEWPQVFLPGWEEEVFPSK 601 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 I + EE RL YVG+TRA ++ Sbjct: 602 R--------------------------------AIDEGGIKSLEEERRLAYVGITRARER 629 Query: 662 LIICKHSNT----SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 I +N + R ++ + + +N + Sbjct: 630 CYISFVANRMIFGRWQSVMPSRFVDELPPEHVDAVSETGYSAAPDGLNSAGFGGVSRFDS 689 Query: 718 HPE--NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + E + + P +NPS T Sbjct: 690 DESFGGSTYESPGWKRAQAARNTTDGRAQYGNWPQKKRPPDINPSGRLTATSDP 743 >gi|304392202|ref|ZP_07374144.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130] gi|303296431|gb|EFL90789.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130] Length = 860 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 107/573 (18%), Positives = 176/573 (30%), Gaps = 130/573 (22%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y++ K DF DL++ L K+ + + + +IL+DE QDT++ Sbjct: 202 RELYRAYQDRLKILNACDFGDLLVECIRLFKENPD---VLLEYRERFKYILVDEYQDTNV 258 Query: 191 IQWEVIRSLTE----------------------DFFVGKNTHSSPRTLFAVGDEKQSIYS 228 Q+ +R L + ++ + VGD+ QSIY Sbjct: 259 AQYLWLRLLAGKGDSASKSASDNPAVLSSPDNIEPTKQIADDTTEPNICCVGDDDQSIYG 318 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GAE +LR + +I+L ++RST IL + + E G + Sbjct: 319 WRGAEVDNILRFDKDFP--------GSKVIKLERNYRSTTHILKAASHLIAHNEGRLGKT 370 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 + T + + + AR Sbjct: 371 LFTDDTDT---------------------------------DAPKVKVAAGWDSEEEARA 397 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I I + DI +L+R L ++ Sbjct: 398 IGEEIEAVQRKGHAL----------NDIAILMRASFQMREFEDRFVSL----GLNYRVIG 443 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467 + L I+D MA R + DDL+F ++ +P + I KI R + Sbjct: 444 GPRFYERLEIRDAMAYFRVVCQPADDLAFERIVNTPKRGLGDTTIKKIRDHARVRRIPML 503 Query: 468 EYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 +Q + + + + S D +IL + + + Sbjct: 504 VAVQEMVETSELGAKQRGTLKTLALNFERWAQLIDSTSHTDLAEIILDESGYTEFWQNDR 563 Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 E +D L E + E L LE + ++ N + V +MT+H Sbjct: 564 SAEAPGRLDNLKELVRSMHEFEN--------LRGFLEHVSLVMDTENNPNLDAVTLMTLH 615 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 AKGLE VFL +F H+ Sbjct: 616 GAKGLEFDTVFLPGWEEGLFPHQRSLD--------------------------------E 643 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 +S EE RL YVG+TRA I SN Sbjct: 644 GGRSGLEEERRLAYVGITRAKKNCHIWFVSNRR 676 >gi|311739798|ref|ZP_07713632.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304871|gb|EFQ80940.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium ATCC 33035] Length = 1059 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 139/959 (14%), Positives = 273/959 (28%), Gaps = 150/959 (15%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIK 109 ++ + + + ++ L + I + + D + + Sbjct: 153 DVVRNYTGQLEDDRALATITETLLKFSQDIDNGLKDTSHIAEHARDFRADIDNLDKSQKN 212 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + T L ++ + + V+ F + + + + V + Sbjct: 213 GPEYSKALLGYIQTQERRVQYVPLLEALKKEQSERQVITFGEQMAVAARVARDHPV---V 269 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + Q +++DE QDTS Q ++RSL ++ AVGD Q+IY + Sbjct: 270 GKQQSQRYKVVMLDEYQDTSYAQRVLLRSLF-------GGDQEDLSVTAVGDPMQAIYGW 322 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + G +L S+R+ + L + + V Sbjct: 323 RGATSENLTAFVEDFPV---APGTSAPKDQLTTSWRNPSGALDLANSVAEGVFEGVERPV 379 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 D + H+ G +QL + + + Sbjct: 380 DELSAAPHK-----GEGEIQLAYFESEVREREFVAE------------------------ 410 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 + +KR VLVRK + + I + + Sbjct: 411 -----------YLKEQWEKREGDTFSAAVLVRKNRHSAPIAAAL----DKAGVPNEIIGL 455 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 L I+DL+A+ ++ ED + V +L P+ DI + +++ E Sbjct: 456 GGLLWQPEIQDLVAIATMLVRPEDLPAAVRLLAGPICGLGISDIQALASRQRNLAGAREE 515 Query: 470 IQKFANCGIS-----------------------------------------KFQHVIKYI 488 ++ + + V + Sbjct: 516 RLRWEPGMDPEDYLRAQLEDVTAEEPDQRVGLADALADLGERDRYTPQGLARMEEVSAKL 575 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSL 547 L + D F I R + ++R LD+F + +S Y+ L Sbjct: 576 RHLRTYSLSKPLVDIFADIEALFNIRTEVLARGSAGGATHLDKFADIVAGFHGDSLYALL 635 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV---FSHKHIK 604 LE+ A + V+IMT H AKGLE V +V S + + Sbjct: 636 DYFALALEKEDGLDLGEVPAATDRVQIMTAHKAKGLEWEHVCVVHADSSSYSAKAETFLS 695 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 ++ +P +D +P + N + K EE RL YV +TR L + Sbjct: 696 RIDKVPGDDDYIEVPEDAQKRSHFQNACEEFKKADSAIKAEESARLFYVALTRTESTLTV 755 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA------------- 711 + K+ + + + + V + + + ++D++ Sbjct: 756 TGSGTNNLNGKNKKAPYEYLERLKEQFPQYVVEWSVPDEPSEDDFGESAQFPALQASPEA 815 Query: 712 -------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--- 761 E P+ + E E +Q K D+ P L S Sbjct: 816 VAGADLVLEAMEELPDLSRGETFELWEQEAGALIEEYKALQQPVVDVELPSELTASDMVA 875 Query: 762 -----IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 + + N RG H L+ R + Sbjct: 876 LRADPLQFARRQRRPVPFKPNSYAKRGTAFHAWLE--------DRFGSPALLGEEELPGI 927 Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQ 875 E +L L + + E V + ++ GR+D + Sbjct: 928 DEPEDFDLEELKEAFLNSEW------AERQPEH-VEAPFEITIGESVVRGRMDAVFRLED 980 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 + ++KT E QL++Y + + + + + YV + F Sbjct: 981 GTWMVVDWKTGRPPQGEAMDAA---KIQLAVYAEAWRRIHGGEKIRAAFYYVHDGYTFE 1036 >gi|327395040|dbj|BAK12462.1| exodeoxyribonuclease V beta chain RecB [Pantoea ananatis AJ13355] Length = 1179 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 152/975 (15%), Positives = 293/975 (30%), Gaps = 147/975 (15%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEER 65 + N K W V + + + + L A+ Q A + Sbjct: 224 AANLERINALKQQWQAASADVEGLISASGVDKRSYSSKHLPNWVAKVTQWALDDTLDYQL 283 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L F + T++ L + + + E + +RD Sbjct: 284 PKELERF-----GQQVLHEKTKKGEAPQHALFDAVDRFLAEPLTLRDVI----------- 327 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + K++ +L F+DL+ ++ L++ A + I LIDE Sbjct: 328 IWQALTEVREAVQREKRQRALLGFDDLLSRLDEALQQPG-GALLAETIRGRFPVALIDEF 386 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT Q+ + R+L H L +GD KQ+IY+F GA+ LR + Sbjct: 387 QDTDPQQYRIFRTLY--------LHQPELALLLIGDPKQAIYAFRGADIFTYLRARSEVS 438 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 T L ++RS+ D++ V+++FS ++ S + + Sbjct: 439 AHYT----------LDTNWRSSPDMVDSVNRLFSQVDSPFLFSSIPFLPVSPAAPNQA-- 486 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---- 361 + + Q P W + + +A++ A IS + Sbjct: 487 --------LKLIYQQQPQPALRFWLQPGEGVGVSDYQQFMAQQCAADISRWLVAGQQGQA 538 Query: 362 -IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 I + ++A DI VLVR R + LI L SV + R + ++ Sbjct: 539 LIGKGDALQPVKASDITVLVRSRNEASLIRDALNSLSIP---SVYLSSRDSVYTTPEARE 595 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 L+ L + + S E + L + +F ++ + + + E Sbjct: 596 LLWLLQAVQSPEQERLLRSALATSIFAIDAAELDALAQNERHWDALVEQFV--------S 647 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---L 537 +Q + L + +L + G ++ L E L L Sbjct: 648 WQQIWHQRGVLPMLRDVMITRQLAENMLASDNGERRLTDLM------HLGELLQEAAVQL 701 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + L + I+ + + + ++ + V+I+T+H +KGL+ P+V+L Sbjct: 702 DSTHALVRFLAQQIARPDSQAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAG-- 759 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + ++ E RLLYV +TR Sbjct: 760 -----------FREAASALYHDRESFAAMLDVQGDEYSLTLAEEERLAEDLRLLYVALTR 808 Query: 658 ASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL-------TNSI 704 + +I + E ++ +V D L I Sbjct: 809 SVHHCSVGIAPLIKGARKKAGESDLHKSALGYLVQRGEIADAAQLSQHLQALEGAGIEVI 868 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + W N L E + L D ++ L ID Sbjct: 869 SSALQPGAIWHEGLGSNDALSSREMTRALADSWRVTSYSGLQQHGSSPLLDALPKFDIDA 928 Query: 765 KGKTNLES-----LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 G+T E + G +H L + I + ++ +N Sbjct: 929 AGETADEEDTLLTPHHFPRGAAPGTFLHGLFESIDFTEPPE-ALWLEDQLQQNGYSLS-- 985 Query: 820 EYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK------------------- 854 + I R+L P+ +++ S D E+ Sbjct: 986 WLPVIQQWIARVLTTPLNKEGVTLSSINSRDRLIEMEFYLPINNLLTATDLDALVRRYDP 1045 Query: 855 -------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY--------- 898 ++ + ++ G ID + Q ++ +YK++ + P Sbjct: 1046 LSQRGPALDFRQVKGMLKGFIDLVFRWQGKYYLLDYKSNWLGESHAAYTPEAMEQAMIDH 1105 Query: 899 THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1106 RYDLQYQLYTLALHR 1120 >gi|293416064|ref|ZP_06658704.1| exodeoxyribonuclease V [Escherichia coli B185] gi|291432253|gb|EFF05235.1| exodeoxyribonuclease V [Escherichia coli B185] Length = 1183 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 278/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + + R ++A DI VLVR R++ + L+ Sbjct: 520 TMAQVCAAQIRDWLQAGQRGEALLMNGDEARPVRASDISVLVRSRQEAAQVRDALTLLEI 579 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 637 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 ++ + E RLLYV +TR+ L + +KK + + E Sbjct: 790 VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 909 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 910 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 970 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1026 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123 >gi|237807125|ref|YP_002891565.1| DNA helicase II [Tolumonas auensis DSM 9187] gi|237499386|gb|ACQ91979.1| DNA helicase II [Tolumonas auensis DSM 9187] Length = 729 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 110/705 (15%), Positives = 215/705 (30%), Gaps = 131/705 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E I + L F + + L + Q +++ Sbjct: 66 AAAEMRGRIERLLGNSLGFGRGGMWIGTFHGLAHRLLRAHPLDANLPEDFQIIDSDDQLR 125 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL ++ + + +D Sbjct: 126 LLKRILRNLNLDEKQWVP---------------RAVAGYINSKKDEGLRPHHIDVYDPVG 170 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y+E + ++DF +L++ ++L + + Q HIL+DE QD Sbjct: 171 RTYQKIYATYQETCDRAGLVDFAELLLRAHELWLHKPH---LLEHYQQRFRHILVDEFQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ IQ+ IR L D + VGD+ QSIY + GA + + R + Sbjct: 228 TNGIQYAWIRMLAGD----------SSKVMIVGDDDQSIYGWRGARVENIQRFMQDFD-- 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST+ IL +++ + G Sbjct: 276 ------DVQTIRLEQNYRSTSTILKAANQLIANNSARLGK-------------------- 309 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 +LW + S + F+ + + AR + + Sbjct: 310 -ELW-------TDGVAGESISVYAAFNEIDE-------ARFVVSRLKAWREQGNSLL--- 351 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 D +L R + ++ ++ + IKD +A R Sbjct: 352 -------DAAILYRNNAQSRILEEAL----MQEQLPYRIYGGLRFFERQEIKDAIAYLRL 400 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISK 480 + + DD SF ++ +P + + I R + +++ + A + Sbjct: 401 LSNHSDDASFERVVNTPTRGIGDRTLGLIREAARDRSLNLWQSAWQLCEQGVLAGRAANA 460 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTL 537 ++ + I++L H ++ + + G I+ L+E +N T Sbjct: 461 VRNFLALINQLETDTSELPLHVQVDRVIRQSGLWTHYENEKGEKGQSRIENLEELVNATR 520 Query: 538 RNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 Y + L + L + V++MT+H+AKGLE P+VF+V Sbjct: 521 LFRPAEEYLDMSPLTAFLAHATLESGDKQADEFDEAVQLMTLHSAKGLEFPLVFMVGVEE 580 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + + EE RL YVGM Sbjct: 581 GMFPSQQSSEEPG----------------------------------RLEEERRLCYVGM 606 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 TRA +L + + K + + + + +++ Sbjct: 607 TRAMQKLYLTHAESRRLYGKESYNRPSRFLKELPSDCLEEIRLRT 651 >gi|154245373|ref|YP_001416331.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154159458|gb|ABS66674.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 817 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 113/658 (17%), Positives = 204/658 (31%), Gaps = 119/658 (18%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L A Y+ K +DF DL++ L ++ + + + ++L+DE QDT++ Q Sbjct: 209 LYAAYQARLKALNAVDFGDLLLEGIRLFRENPD---VLAEYHKRFKYLLVDEYQDTNVAQ 265 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R L + + + VGD+ QSIY + GAE +LR + Sbjct: 266 YLWLRLLAQ----------GSKNVCCVGDDDQSIYGWRGAEVDNILRFESDFP------- 308 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 +I L ++RST IL + + E G + S Sbjct: 309 -GAKVIRLERNYRSTGHILASAAHLIAHNEGRLGKTLFS--------------------- 346 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + +Q + T +DS + AR + I + + Sbjct: 347 -------EGEDGEQVTVTGAWDSGEE-------ARAVGEEIEALQRAGH----------K 382 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +I +LVR L + + I+D +A R + S Sbjct: 383 LSEIAILVRASFQMREFEDRFVTL----GLPYRVIGGPRFYERAEIRDALAYLRCVNSSA 438 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DDL+F ++ P + + +I R + E + + + + V+ Sbjct: 439 DDLAFERIVNVPKRGIGDATVKQIHDVARAVGLPLQEATRVLTESEELKPKVRATLRGVV 498 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545 + A+ S + ++L + + E L+ E Sbjct: 499 EAFGRWREQARVLSHTELAEIVLDESGYTEMWQKDRSAEAAGRLENLKELVRSME----- 553 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 + L LE + + A + V+IMT+H+AKGLE VFL +F H+ Sbjct: 554 PFENLSGFLEHISLVMDTDNGAGEDAVQIMTLHSAKGLEFDTVFLPGWEEGLFPHQR--- 610 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + K+ EE RL YVG+TRA Sbjct: 611 -----------------------------ALDEQGKAGLEEERRLAYVGITRAR-----A 636 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 + W V F ++ +++ S W + + + Sbjct: 637 SARIFVASNRRIHGMWNSTVPSRFLDELPDAHVRVEESRGGAGWGGSSYGGGSYGQSRFD 696 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783 R E ++ + + S G + + RG Sbjct: 697 RAEPFSASSYSTPGWQRAQANRGRTDQGGFAGASSGSSRSGFSERGGRYDAGGSARRG 754 >gi|302346510|ref|YP_003814808.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica ATCC 25845] gi|302150595|gb|ADK96856.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica ATCC 25845] Length = 851 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 113/689 (16%), Positives = 197/689 (28%), Gaps = 124/689 (17%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + + YE ++ +DF+D+++ T L + IR Sbjct: 164 AEDRAAIERDRSARMPAI-HMIYKAYEARCRQANAMDFDDILLYTFLLFRDN---KEIRE 219 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 K Q+ +IL+DE QDT+ Q +I L E + R + VGD+ QSIYSF G Sbjct: 220 KYGQQFEYILVDEYQDTNYAQVSIISQLAE----------THRRICVVGDDYQSIYSFRG 269 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A +L K + +L ++RST I+ + + E Sbjct: 270 ANIDNILDFKHKFD--------DAKLFKLERNYRSTQLIVQAANSLMKHNE--------- 312 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 I G L++ S + A +A Sbjct: 313 -RQIPKDVFSKEAEGDKILYKPCYSDRE-------------------------EAMVVAN 346 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 + + D + +L R + R I Sbjct: 347 ELKRIKRND---------DCDYGNFAILYRTNAQSRSFEDEFR----KQGIPYKIIGGLS 393 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-- 468 IKD++A R + + D+ +F ++ P I K I + + +++E Sbjct: 394 FYQRKEIKDIIAYFRLVSNPNDEEAFRRIINYPTRGIGNTTIQKIIDCAQRNSVSLWETI 453 Query: 469 -----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 Y ++K I I ++ I+ S Sbjct: 454 LNPIQYGLDVNKGTMTKLFAFRTLISGFIKNVALKDAYELGKEIIEESGLSADIRSGSEP 513 Query: 524 E---VIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANH-NEVRIM 575 E + L+EF++ + +E L L++ + +V +M Sbjct: 514 EDLARRENLEEFMSAMQGFVDSGREEGREENVYLTDYLQEVALYTDADKEDDDTPKVTLM 573 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE P VF+V +F Sbjct: 574 TIHAAKGLEFPTVFVVGLEENIFPSPMS-------------------------------- 601 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHND 692 K EE RLLYV +TRA I+ N + + N + + + + Sbjct: 602 --ASSKREIEEERRLLYVAITRAERHCILTNAKNRFRYGSMQVDNPSRFLNDFDPALIHV 659 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 E K W S + E + + + + Sbjct: 660 EDEANSAFGGERRKMPWDEDNSSRNAWGRNRSEDNFREYEPNKAYTGSRPWGQEYRQMGS 719 Query: 753 EPYILNPSTIDTKGKT-NLESLLSDNQTF 780 NP + + + Sbjct: 720 RWQNSNPVASQFRADPKPKITERKRPEAA 748 >gi|304410803|ref|ZP_07392420.1| DNA helicase II [Shewanella baltica OS183] gi|307305026|ref|ZP_07584776.1| DNA helicase II [Shewanella baltica BA175] gi|304350700|gb|EFM15101.1| DNA helicase II [Shewanella baltica OS183] gi|306912428|gb|EFN42852.1| DNA helicase II [Shewanella baltica BA175] Length = 722 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 96/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQDRFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFP------- 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 273 -SATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I +++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKD 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R T+++ + A + + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I + Q + ++ A + + + G + + L+E + E Sbjct: 463 DLIMTMREDTQDMVLYRMADTVIQASGLKVMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNGFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|317049330|ref|YP_004116978.1| exodeoxyribonuclease V subunit beta [Pantoea sp. At-9b] gi|316950947|gb|ADU70422.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. At-9b] Length = 1179 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 132/878 (15%), Positives = 275/878 (31%), Gaps = 124/878 (14%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + D F + L + A + K+ + +L F+DL+ ++ L Sbjct: 302 EAPHHALFTAIDHFLAQPITLRDLVIARALTEVRAAVRKEKRLHALLGFDDLLSRLDEAL 361 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 ++ + + I Q LIDE QDT +Q+ + +L + L +G Sbjct: 362 QQPGGAQ-LAEAIRQRFPVALIDEFQDTDPLQYRIFSTLY--------VNQPEHALLLIG 412 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D KQ+IY+F GA+ +R + T L ++RS+ ++T V+++FS Sbjct: 413 DPKQAIYAFRGADIFTYIRARNDVSAHYT----------LDTNWRSSPPMVTSVNQLFSR 462 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + ++ + ++ + D Q W D Sbjct: 463 LDAPFLFADIPFLAVNFATANQA----------LTLNLDQQPQAALRFWLQPGDGCSVGD 512 Query: 341 SASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 +LA++ A IS + + R +QA DI VLVR R + LI Sbjct: 513 YQQLLAQQCAADISRWLQAGQEQRAMLGKAPALRPVQASDITVLVRSRNEANLIREALNQ 572 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 L SV ++R + ++L+ L + IL+ E + L + LF F + Sbjct: 573 L---AIPSVYLSNRDSVYTTPEARELLWLLQAILAPEQERMLRTALATSLFAFDAAQLDM 629 Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 + + + + +++Q + + L + Q +L ++ G + Sbjct: 630 LDQDARGWDQLVDTF--------ARWQLLWQQRGVLPMLRQMMLERQLAENLLASENGER 681 Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNS---YSSLQELISELEQYPPTIKRAHSANHNEV 572 + L E L + L + I+ + + + ++ + V Sbjct: 682 RLTDLL------HLGELLQEAASQLDSPHALVRHLAQQIARPDSQAASQQLRLESDRHLV 735 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +I+T+H +KGL+ P+V+L F+ + + ++ G + + Sbjct: 736 QIVTIHKSKGLQYPLVWLP------FAAGFREADTALYHDRENFGAVLDLQND------- 782 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMVY 686 + ++ E RLLYV +TR+ + ++ ++ Sbjct: 783 EASLALAEQERLAEDLRLLYVALTRSVYHCSVGVAPLFRGTRKKEGASDLHKSALGYLLQ 842 Query: 687 DSFHNDE-------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 T + E A W L E + L D ++ Sbjct: 843 RGEAATASQLAMLLAEMNTDGTEVVLAGESDAMRWQAQAVSEEALSAREVTRMLADPWRV 902 Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------DNQTFNRGLIIHKLLQVI 793 ++ +D G E S + G +H+L + + Sbjct: 903 TSYSGLQQHGSSRLLEVMPGFDVDASGDAAGEPPPSALTPHHFPRGAAPGTFLHELFESL 962 Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVS 850 + L + + + + + + D E++ Sbjct: 963 DFTQPPTAEALEQHLQQNGYPLHWQPMLSDWIARVVSTPLDAQGIHLAGVQAQDRLVEMA 1022 Query: 851 V--------------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884 + ++ + ++ G ID + Q ++ +YK Sbjct: 1023 FFLPIDGMLQAATLDALVKSHDTLSEQAPPLDFRQVQGMLKGFIDLVFRWQGKYYLLDYK 1082 Query: 885 THHHVPQEIEHIPY---------THIAQLSIYEKILKD 913 ++ + P + Q +Y L Sbjct: 1083 SNWLGDSHGAYTPQAMAQAMIDHRYDLQYQLYSLALHR 1120 >gi|254796731|ref|YP_003081567.1| DNA helicase II, UvrD/Rep family, N-terminal fragment [Neorickettsia risticii str. Illinois] gi|254589979|gb|ACT69341.1| DNA helicase II, UvrD/Rep family, N-terminal fragment [Neorickettsia risticii str. Illinois] Length = 481 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 107/546 (19%), Positives = 176/546 (32%), Gaps = 119/546 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y+E K+N +DF DL+++ L K A K ++ +I++DE QDT+ Sbjct: 29 ALSVYDAYQEKLKENNSMDFGDLLMHNVTLFNKD---AETLEKYKEKFRYIMVDEYQDTN 85 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 L Q+ +R L + + VGD+ QSIY + GAE +LR + + Sbjct: 86 LCQYLWLRLLAQ----------KHSNICCVGDDDQSIYGWRGAEVGNILRFAKDFE---- 131 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I+L ++RST ILT V ++ + Sbjct: 132 ----GAKVIKLEQNYRSTNKILTAAHNVIKNNQSRLTKKLWTAYP--------------- 172 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 ++ +Y DS + AR I I +K Sbjct: 173 -------------GGEEIQIFTYMDSEQE-------ARAIIRMIKE-----------RKL 201 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 V + D +LVR T + + I+D++A R ++ Sbjct: 202 VCRYSDTAILVRAGFQTRAFEEA----AIHENVPYRVVGGLKFYERKEIRDVIAYLRLVV 257 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK---FQHVI 485 + D+L+F ++ +P + + KI E +++E +K K + Sbjct: 258 NPNDNLAFERIINTPKRGLGQASLNKIYNYSLEEGCSMFEAARKLEENEKLKSTALLTFV 317 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545 K + + + S HD I I+ +DE + Sbjct: 318 KQVRKWQEESLNHSLHDLLKKITLESGYISAL-REQDETRIENVDELFRVIQEFDDA--- 373 Query: 546 SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 L+ + N + V +MT+H +KGLE VFL F H Sbjct: 374 -----TDFLQHVSLLTESDAQINNTDAVNVMTLHASKGLEFEQVFLPGWEDGTFPH---- 424 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 EE RL YVG+TRA L I Sbjct: 425 ------------------------------ARSLFSTEQIEEERRLAYVGITRAKRFLTI 454 Query: 665 CKHSNT 670 Sbjct: 455 TSAHRR 460 >gi|296104480|ref|YP_003614626.1| exonuclease V subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058939|gb|ADF63677.1| exonuclease V subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1180 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 120/871 (13%), Positives = 274/871 (31%), Gaps = 133/871 (15%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + + L + K++ L F+D++ + L + + Sbjct: 314 ETLLAEPLTLNDLMITRAMAEIREAVSREKRRRGELGFDDMLSRLDAALC-SENGEALAA 372 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 I +IDE QDT Q+ + R + L +GD KQ+IY+F G Sbjct: 373 AIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPNTALLLIGDPKQAIYAFRG 424 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ ++ + + T L ++RS+ ++ V+ +FS ++A E Sbjct: 425 ADIFTYMKARSEVEAHYT----------LDTNWRSSPGMVESVNALFSRMDSAFMFREIP 474 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 ++ + + + + P W + +A+ A Sbjct: 475 FQPVKFAARNAS----------LRFEFNGVNQPAMNFWLLDGEGCGVTDYQHAMAQHCAA 524 Query: 352 TISNMIGTDTIFSNGKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I + + T + ++A DI VLVR R++ LI L SV Sbjct: 525 QIRDWLSAGTRGEALLWKGNTSAPVKASDITVLVRSRQEAALIRDALTSLNIP---SVYL 581 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 ++R + + L ++++ + + +L+ E + + L S + + DI + E Sbjct: 582 SNRDSVFETLEAQEMLWVLQAVLAPERESTLRSALASSMLGLNARDIDALNC----DEAA 637 Query: 467 YEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524 ++ + + ++Q V+ + EL+ +L G ++ Sbjct: 638 WDAVVEEFVQYRERWQKRGVMAMLRELMRQRH------IAENMLATAGGERRLTDIL--- 688 Query: 525 VIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581 + E L L +E L + I++ + + ++ + V+I+T+H +K Sbjct: 689 ---HISELLQEAGTQLESEHALVRWLAQQIADPNSNSSSQQMRLESDKHLVQIVTIHKSK 745 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE P+V+L + + + + ++ + Sbjct: 746 GLEYPLVWLPFIANYRVQDQAFYHDRESFE-------------AVLDLSKAESSVELAEA 792 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------------- 684 E RLLYV +TR+ + + T + + Sbjct: 793 ERLAEDLRLLYVALTRSVWHCSLGIAPLFRRRGEKAGETDFHLSALGRLIQLGEPKDAAG 852 Query: 685 -VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 + + + + W E + + R + ++ Sbjct: 853 LRQCIETLCGEHIALHIPSQPDNSRWQLPEQQITDLQARQITRTVADDWRVTSYSGLQQH 912 Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 I D+ ++ + + + + + + G +H L + + + + Sbjct: 913 GQSIAQDLMPKLDVDAAGTGSVPDEPVLTPHQFPRGASPGTFLHSLFEEL-DFTQPVSEE 971 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINC 857 ++ + + A+ L IT +L P+ ++ + D E+ I Sbjct: 972 WVLKML--QSGGYDAQWQPVLSEWITAILHAPLTAQGVSLSQLTARDKQVEMEFYLPIAS 1029 Query: 858 PKK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891 P + ++ G ID + + ++ +YK++ Sbjct: 1030 PLRAEALDALIREHDPLSAGCPPLNFRQVQGMLKGFIDLVFRHEGRYYLLDYKSNWLGEN 1089 Query: 892 EIEHIPY---------THIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1090 SEAYTQQAMASAMQMHRYDLQYQLYTLALHR 1120 >gi|238787258|ref|ZP_04631057.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia frederiksenii ATCC 33641] gi|238724520|gb|EEQ16161.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia frederiksenii ATCC 33641] Length = 1206 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 128/986 (12%), Positives = 293/986 (29%), Gaps = 148/986 (15%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 +E+ ++ + L + K++ + + E ++ Sbjct: 212 EDETILSRHQQIVLQIDAVKEQWRAAAHELEALISGSGVDKRSYSTKHLPNWLGKVEVWA 271 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 ++ +K + K Q DR + L Sbjct: 272 EQATGDYQLPKELEKFRQSVLFEKTKKGAAP-----QHALFSAIDRIYEQPLTLRDLILA 326 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + ++ K++ L F+DL+ + L++ + I +IDE QD Sbjct: 327 RAISEIRTSVQQEKRQRAELGFDDLLSKLDAALQQPG-GELLAQAIRTRYPVAMIDEFQD 385 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T Q+ + +L L +GD KQ+IY+F GA+ +R + Sbjct: 386 TDPQQYRIFHTLYGG--------QGDCGLLLIGDPKQAIYAFRGADIFTYIRARSEVSAH 437 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 T L ++RS+ ++ V+++FS+ + + + Sbjct: 438 YT----------LETNWRSSFPMVQSVNRLFSLVKVPFLFEQIPFINVA----------P 477 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TI 362 + Q+ + + P W + + ++AR+ A I + + + Sbjct: 478 AEKNSQLSFEIKGKKQPAISFWLQPGEGVGVSEYQQLMARQCAAQIRDWLTAGQQGLAQL 537 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + + +QA DI +LVR R + L+ L SV ++R + D KDL+ Sbjct: 538 VTAESSKPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAEAKDLL 594 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L + +L+ E + + + + + + + +T+ + + + Sbjct: 595 WLLQAVLAPEQERALRSAMATGILGLDAKMLDALNHDERAWDTLVDEFDGYRQHWQR--R 652 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539 V+ + E++ +L G ++ L E L L + Sbjct: 653 GVLPMLREIMAHRH------LAENLLATPGGERRLTDVL------HLGELLQEAASQLDS 700 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L + I++ + ++ + V+++T+H +KGLE P+++L G+ Sbjct: 701 EHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLIWLPFVGNFRQQ 760 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + + ++ E RLLYV +TRA Sbjct: 761 QDVLYHDRHSFEAL-------------LDLSADEESQALAEEERLAEDLRLLYVALTRAV 807 Query: 660 DQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW---- 709 +I + + +V D + KL + Sbjct: 808 YHCSVGIAPLIKGGRKKQGDSDMHLSALGYLVQRGQAGDAQYLADKLAELVTLAAGDISV 867 Query: 710 -IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK---------------NDINE 753 + + + + + Q + ++ Sbjct: 868 SAVGQLNETPWQPQSEALPALAARQFNRQIQDYWRVTSYSGLQQHGSSKSGLSSVLNVPL 927 Query: 754 PYILNPSTIDTKGKTNL-----ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808 +L D G+ + + + + G +H LL+ + ++ Sbjct: 928 QELLPRLDTDAAGEQAVITDNHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIDQEWLTEQL 987 Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKKDI 862 + + + L + +L+ P+ + +E+ I+ + Sbjct: 988 ---QQQGFGEQWSAMLYQWLYDVLQVPLNETGVTLAGLTPQSKQAELQFYLPIDALLQAR 1044 Query: 863 --------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896 ++ G ID + Q ++ +YK++ + Sbjct: 1045 ELDALIKHYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYT 1104 Query: 897 PY---------THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1105 AEAMTQAMAEHRYDLQYQLYTLALHR 1130 >gi|254462521|ref|ZP_05075937.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium HTCC2083] gi|206679110|gb|EDZ43597.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 817 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 107/664 (16%), Positives = 199/664 (29%), Gaps = 143/664 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 A Y++ + +DF DL+++ + + D + + + +IL+DE QDT++ Sbjct: 197 EFYAMYQKRLLELNAVDFGDLLLHVVTIFQTHDD---VLNQYQRWFRYILVDEYQDTNVA 253 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 254 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 297 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL V + E G LW Sbjct: 298 --GAKVVRLEQNYRSTPHILAAASNVIAGNEGRLGK---------------------DLW 334 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ ++D + AR I + M I Sbjct: 335 -------TASEEGEKVRLIGHWDGEEE-------ARWIGEELEAMQSG-----TRGMNPI 375 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ +LVR + + + I+D MA R + S Sbjct: 376 SLNDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRIVTSP 431 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE------YIQKFANCGISKFQHV 484 +DDL+F ++ +P + KI R ++ E + G ++ + Sbjct: 432 DDDLAFERIVNTPKRGLGDKAQQKIQMAARANGVSLVEGARIVVENKAIGGKGGAELAKL 491 Query: 485 IKYIHELIHIA----------------------------QFCSPHDFFTLILGAKKGRQQ 516 + + + S + +IL Sbjct: 492 VDGLDRWAALTRGPRVATIIDDDAVLDDGPQMSEPEFGPPEMSHVELAQVILDESGYTAH 551 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + + E ++ L E + + E L LE + +V Sbjct: 552 WQNDKTPEGPGRLENLKELVKALEQFEN--------LQGFLEHVSLIMDNTQEDEAAKVS 603 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 IMT+H AKGLE P VFL +F + Sbjct: 604 IMTLHGAKGLEFPAVFLPGWEDGLFPSQRS------------------------------ 633 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + EE RL YVG+TRA D I +N + + + + + Sbjct: 634 --MDESGLKGLEEERRLAYVGITRAEDICTISFTANRMVFGQWQSQLPSRFIDELPEDHV 691 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 V N + + ++ + +++ + + + E Sbjct: 692 EVLTPPGLYGGNYGAAGMGMGGSGQSDLEKRVQDANVYNSPGWKRLQARKDNRPMSQPAE 751 Query: 754 PYIL 757 + Sbjct: 752 SKNI 755 >gi|157828499|ref|YP_001494741.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933219|ref|YP_001650008.1| DNA helicase II [Rickettsia rickettsii str. Iowa] gi|157800980|gb|ABV76233.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908306|gb|ABY72602.1| DNA helicase II [Rickettsia rickettsii str. Iowa] Length = 653 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 110/567 (19%), Positives = 189/567 (33%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + L +AK + Y++ + VLDF DL++ N+L K + I ++ Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N + Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHSKT-------- 309 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + W+ + AR IA I + Sbjct: 310 -------------LW---TDRENGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + A +I +LVR T + + + + Sbjct: 343 VRE---------NRYNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L++ D+L+ ++ P + KI + + I++ Sbjct: 390 EIRDVLAYIRISLNKNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449 Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 G K + ++ I +P + IL + E I Sbjct: 450 IGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF + Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGDKGL 589 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 EE R+ YVG+TRA L I + Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616 >gi|295677083|ref|YP_003605607.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] gi|295436926|gb|ADG16096.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] Length = 795 Score = 277 bits (707), Expect = 8e-72, Method: Composition-based stats. Identities = 120/724 (16%), Positives = 214/724 (29%), Gaps = 168/724 (23%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ LI + W + S ++ + L Sbjct: 38 GAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTNKAAREMMARLSALLPIDTRGMWIGT 97 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + T + L + L K Q Sbjct: 98 FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 157 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ K +T L Y++ ++ V+DF +L++ +LL +R Sbjct: 158 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 214 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F Sbjct: 215 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGQ----------HNAIFAVGDDDQSIYAFR 264 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + R ++I+L ++RS IL +++ + G + Sbjct: 265 GANVGNMRDFEHEFNVR--------NLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 316 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + ++ S A I Sbjct: 317 TD---------AGHGEPVRVY--------------------------ESATDSQEAGWIV 341 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +I T + +I VL R + I + I+ Sbjct: 342 EEIRALINTG----------LSRSEIAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGL 387 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + +K +A R I + DD +F ++ P I ++ R ++ Sbjct: 388 RFFERQEVKHALAYLRLIDNPNDDTAFGRVVNFPTRGIGARSIEQLADAARLYNCSMAAA 447 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 I A S I ++ Q S + ++ A + + R G E ++ Sbjct: 448 IPYVAGKAGSSLAAFANLIGKMRADTQQMSLPETVEYVVRASGLADFYQNEREGQERLEN 507 Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549 L E +N L Sbjct: 508 LQELVNAAAAFVSEEGYGLDTPARSIPLRPGASAAPELAVATDDPNTVVLDAPSIADPAQ 567 Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L L A V++MTVH AKGLE VF+ +F H+ Sbjct: 568 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 627 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ EE RL+YV +TRA ++ Sbjct: 628 NS----------------------------------AMEADGLEEERRLMYVAITRAKER 653 Query: 662 LIIC 665 L + Sbjct: 654 LYLS 657 >gi|24372062|ref|NP_716104.1| DNA-dependent helicase II [Shewanella oneidensis MR-1] gi|24345940|gb|AAN53549.1|AE015495_3 DNA helicase II [Shewanella oneidensis MR-1] Length = 722 Score = 277 bits (707), Expect = 9e-72, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 189/551 (34%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRMLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERLGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGEPISLYCAFNEMDE-------ARFIVGRINDWYEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I ++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R + T+++ + A S + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I L Q + + ++ A + + + G + + L+E + E Sbjct: 463 DLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|239979932|ref|ZP_04702456.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] gi|291451787|ref|ZP_06591177.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] gi|291354736|gb|EFE81638.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] Length = 840 Score = 277 bits (707), Expect = 9e-72, Method: Composition-based stats. Identities = 123/767 (16%), Positives = 226/767 (29%), Gaps = 144/767 (18%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + + P VS + + + + + + Sbjct: 131 AAGEMKERVEELVGPRANAMWVSTFHSACVRILRRESKHL-----GFTSSFSIYDAADSK 185 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + K +LK +L F+ T Sbjct: 186 RLMALVCRDLDLDP-KRYPPKSFTAKVSNLKNEL------VDPEDFAAQAADGFEKT--- 235 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y+ ++ LDF+D+I+ T LL+ + + H+L+DE Q Sbjct: 236 ---LAQAYTMYQSRLREANALDFDDIIMTTVHLLQ---AFPDVADHYRRRFRHVLVDEYQ 289 Query: 187 DTSLIQWEVIRSL--------------TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 DT+ Q+ ++R L E + P L VGD QSIY+F GA Sbjct: 290 DTNHAQYSLVRELVGTPADRPVDVPEGAESDHDPLHPAPEPAELCVVGDADQSIYAFRGA 349 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +L+ + + I L ++RST ILT + V EN + + Sbjct: 350 TIRNILQFEEDYPN--------ATTILLERNYRSTQTILTAANAVIERNENRRPKN---- 397 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW D+ + + + A+ +A Sbjct: 398 -----------------LW------TDAGAGAGITGYVADTEHDE--------AQFVAEE 426 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I + +A DI V R + + + + Sbjct: 427 IDRLTDAG---------DAKAGDIAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRF 473 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED---DIFKICTQRHETETVYEY 469 + ++D++A R + + ED +S +L +P + I + + + Sbjct: 474 YERKEVRDVLAYLRVLANPEDSVSLRRILNTPKRGIGDRAEAMIDALSQRERVSFPQALR 533 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQF-----CSPHDFFTLILGAKKGRQQFISRFGNE 524 A ++ + +K + L+ + P ++ + + + Sbjct: 534 RVDEAYGMAARSANAVKRFNTLMEELRTVVESGAGPATVLEAVMERTGYLAELQASTDPQ 593 Query: 525 ---VIDVLDEFLNFTLRNEQ--NSYSSLQELISELE-----QYPPTIKRAHSANHNEVRI 574 I+ L E L EQ + L LE I + + Sbjct: 594 DETRIENLQELAAVALEFEQDRSEEEGAGTLPEFLEQVALVADSDQIPDEDEDGSGVITL 653 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+HTAKGLE PVVFL VF H Sbjct: 654 MTLHTAKGLEFPVVFLTGMEDGVFPHMRALG----------------------------- 684 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + EE RL YVG+TRA ++L + + + S + + + + + Sbjct: 685 -----QTKELEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPEQHLK 739 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741 K+ + S ++ + Sbjct: 740 WKRTGSMGAPAAASPRGPAGSVASSLSSSTRAKGAPAFATRRAAEQP 786 >gi|90580937|ref|ZP_01236738.1| putative exodeoxyribonuclease V [Vibrio angustum S14] gi|90437815|gb|EAS63005.1| putative exodeoxyribonuclease V [Vibrio angustum S14] Length = 1203 Score = 277 bits (707), Expect = 9e-72, Method: Composition-based stats. Identities = 146/897 (16%), Positives = 287/897 (31%), Gaps = 132/897 (14%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q ++ +AK L F+DL+ + Sbjct: 307 EAPQHAVFVAVADLLDNPATLRDPLLAHAIEHCRILLAQAKAHKGWLSFDDLLTQLGAAI 366 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 D + KI + +IDE QDT +Q+ + S+ D LF +G Sbjct: 367 -DNDQDDLLASKIRSQYPVAMIDEFQDTDPLQYGIFSSVYND--------HPECGLFMIG 417 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D KQ+IY+F GA+ ++ +R Q T L ++RSTAD++ V+ VF Sbjct: 418 DPKQAIYAFRGADIFTYIQARRQVQDHYT----------LGTNWRSTADMIASVNSVFDT 467 Query: 281 PENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339 P + +D + + H + W Q + Q+S + + Sbjct: 468 PNSPFIYDQDITFDPVSHSPKAPDRS-----WWLNGEQQHALTFWLQDSLDGK--PITKG 520 Query: 340 SSASILARRIAYTISNMIG-----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 S +A A I +++ + +QA DI VLVR ++ L+ Sbjct: 521 DYESTMATATAAQIQHILEQSQQGQGYFLDKETQHPVQAGDIAVLVRTGREGKLVRE--- 577 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 L SV ++R + D+ L + +L+ +DD + L S LF+ + ++ Sbjct: 578 ALAKQGIASVYLSNRDSVFSTAEAADVQRLLQAVLTPDDDRALRAALASGLFSLTAIELD 637 Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 + +E E +++ + + V+ + ++ +L + G Sbjct: 638 TLNNDENEWEIAVNSFKQYRQQWLK--RGVMPMLRSVMAKNN------IAERLLVEEGGE 689 Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNE 571 ++ + E L + + Y+ L+ L + + + N Sbjct: 690 RRLTDLL------HIGELLQEASQTLDSDYALLRWLAENVAEPNGNSDEQILRLESERNL 743 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V+I+T+H +KGLE +VF+ S + K + DD + I + Sbjct: 744 VQIVTIHKSKGLEYDLVFMPFVCSY---REVDSKGEVKYHDEDDNVTILDITK------- 793 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFH 690 +D I + E RL+YV +TRA + K + Sbjct: 794 HADSISKADRERLAEDLRLIYVALTRAVYGCFVGMAPVRNGRSSKEPTGLHKSAMGYLIQ 853 Query: 691 NDER-------------VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL---- 733 N E + AY+W+ + + L R E +Q+ Sbjct: 854 NGEECGVAALELALAKLSEAQPTITIAEPPVLPAYKWAGQNEQTDALNRREFERQIERNW 913 Query: 734 ----------MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLSDNQTFNR 782 Q DI+ P +T+ + E S+ + + Sbjct: 914 WMTSYSNLVKQGHQAHHDSSLDLPGFDIDSVQKETPENSETEVELEPEYSIYTFPRGARP 973 Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCT----KNAKLWPAKEYKNLLLSITRL-LENP-- 835 G +H + + I + ++ +L + L+ + L+ Sbjct: 974 GTFLHTVFEEIEFTRPVDSPETVAKLTELLQLEHYELAWLPVLQQLINDVLHCPLDGEQL 1033 Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQ 870 + +E+ I + ++ + G ID Sbjct: 1034 RLAEKTPQQRLTEMEFLLPIEMLQSPLLNKVIAKHDSISAKAGELGFSTVSGMLKGFIDL 1093 Query: 871 ISISQQNIFIFEYKTHHHVPQ----EIEHIPY-----THIAQLSIYEKILKDSYPNK 918 + Q ++ ++K+++ E + + Q IY L+ ++ Sbjct: 1094 VFEHQGKYYVLDWKSNYLGDDPQVYRGEQLVEAMRDHRYDLQYQIYALALQRFLRSR 1150 >gi|298345243|ref|YP_003717930.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063] gi|298235304|gb|ADI66436.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063] Length = 877 Score = 277 bits (707), Expect = 9e-72, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 201/707 (28%), Gaps = 144/707 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L ++ + ++ ++L + Sbjct: 85 GAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLVGNAAKYMWVST 144 Query: 66 FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110 F L T+ F+ T+ + + + K + + Sbjct: 145 FHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIKGRGLDPKRFPPKSFAAKISQA 204 Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ T ++F L + Y++ ++ DF+DLI +T L K Sbjct: 205 KNELITPEVFALGAGVDKMSQLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPD-- 262 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + + H+L+DE QDT+ Q+E+IR LT P L VGD QSIY Sbjct: 263 -ILARYRAKFRHVLVDEYQDTNPAQYELIRLLT---VGATGDAQPPAELTVVGDSDQSIY 318 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA + + + + + L ++RST IL+V + + S E + Sbjct: 319 AFRGATIRNIEEFESDFP--------GATTVYLEQNYRSTGTILSVANAIISENEGRRKK 370 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + ++ L + A Sbjct: 371 NLWTDAGQGMQAV-----------------------------------LYAADTDRDEAA 395 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I + + + + V R + + + I Sbjct: 396 FIVRELQKLRQEGS----------SWDEFAVFYRTNAQSRSLEEML----TREGIPYRVV 441 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---------- 457 D IKD +A + DD + + +L P + + I Sbjct: 442 GGTKFYDRREIKDAIAYLCAAANPADDGNLLRVLNEPKRGLGDKAVQTIREVSLSENLDF 501 Query: 458 -TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQ 515 + + + + + + + + A + L Sbjct: 502 GQALRQFLPGGTHHGDLSAKASAGITEFVGVLDAMRALDAAGAPLDEILDTALEDSGYLP 561 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSAN--- 568 + + ++ L E N + + L + + + + +A Sbjct: 562 KLRKSNDPQDDARVENLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAGQPE 621 Query: 569 ----------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 EV +MTVHTAKGLE VF+ +F H + Sbjct: 622 RPADPVHPAAPPEVTLMTVHTAKGLEFNTVFVTGMEDGLFPHSRSLESP----------- 670 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 E RL YV +TRA +L + Sbjct: 671 -----------------------QDIAEERRLAYVAVTRARQRLYLT 694 >gi|188026352|ref|ZP_02961779.2| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827] gi|188020076|gb|EDU58116.1| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827] Length = 723 Score = 277 bits (707), Expect = 9e-72, Method: Composition-based stats. Identities = 103/551 (18%), Positives = 184/551 (33%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+EA + ++DF +L++ ++L + + + +IL+DE QDT+ IQ Sbjct: 176 VYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---VLQHYRERFTNILVDEFQDTNSIQ 232 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L D + VGD+ QSIY + GA+ + + R Sbjct: 233 YAWIRVLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL + + + + G + LW Sbjct: 276 -GAETIRLEQNYRSTNNILKAANALIAHNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ L + AR I I Sbjct: 313 ------TEGGDGEPISLYCAFNELDE-------ARYIVSRIKQWQENGGAL--------- 350 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 +D +L R + ++ + + IKD ++ R I ++ Sbjct: 351 -QDCAMLYRSNAQSRVLEEAL----IQSAMPYRIYGGQRFFERQEIKDALSYLRLIANRN 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485 DD SF ++ +P E + + R + T++E + + + + Sbjct: 406 DDASFERVVNTPTRGIGERTLDTVRQTARDQQLTLWESCEYLLREQVLGGRAAAAIERFL 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-Q 541 + + L Q H ++ R + G + + L+E +N T Q Sbjct: 466 ELVDALAKETQEMPLHVQTDRVINDSGLRAMYEQEKGEKAQARIENLEELVNATRDFSYQ 525 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 526 DEDQDLMPLQAFLSHAALESGDGQADIHQDAVQLMTLHSAKGLEFPNVFIVGMEEGMFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 QMSMDESG----------------------------------RLEEERRLAYVGITRAMQ 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTITYAESRR 622 >gi|82778196|ref|YP_404545.1| exonuclease V subunit beta [Shigella dysenteriae Sd197] gi|81242344|gb|ABB63054.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella dysenteriae Sd197] Length = 1180 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|78186341|ref|YP_374384.1| DNA helicase II [Chlorobium luteolum DSM 273] gi|78166243|gb|ABB23341.1| ATP-dependent DNA helicase PcrA [Chlorobium luteolum DSM 273] Length = 735 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 106/552 (19%), Positives = 185/552 (33%), Gaps = 118/552 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A + Y ++N LDF+DL+I +L ++ + +++ + +ILIDE QDT+ Sbjct: 170 AALVYELYTRKLRENNALDFDDLLIKPLELFREHPD---VLHELQELFRYILIDEYQDTN 226 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ V + L E R +F VGD+ QSIYS+ GA+ +L + ++ Sbjct: 227 RAQYLVTKQLAE----------RYRNIFVVGDDAQSIYSWRGADISNILNFQDDYRES-- 274 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +L ++RSTA ILT + V S Sbjct: 275 ------ETFKLVDNYRSTATILTAANSVISRNSRQIKK---------------------- 306 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 E V E++ A ++ I +M + Sbjct: 307 --ELVPQGAKGDPLTLIEAYN-----------ERNEAEKVGERILSMHRE---------K 344 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 ++ + V R + ++ R +I IKD +A RFI Sbjct: 345 GLEFRSFAVFYRTNAQSRVLEDAMR----QSRIPYKIFGSVSFYKRREIKDAVAYLRFIQ 400 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKFQH 483 + D S + ++ P + I K+ T+YE I+ F ++ Sbjct: 401 NDRDSESLLRIINFPPRKIGDVSITKLRQFAEERGLTLYEAIRSAGEGGFPQRLLTALGS 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I +L A + +D + + E + L E L+ Sbjct: 461 FSAVIEKLRETAVDGTVYDVLHELFELTAIPSLLQAENTPESLARHENLQELLSMARDFS 520 Query: 541 QNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 ++ SL + + + + N V +MTVH +KGLE PVVF+ ++F Sbjct: 521 DHNPDRGSLGDFLENIALASD--YDETQESDNFVSLMTVHASKGLEFPVVFITGLEERLF 578 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + + EE RL YV +TRA Sbjct: 579 P------------------------------------LNCFEPEQLEEERRLFYVAVTRA 602 Query: 659 SDQLIICKHSNT 670 +++ + + Sbjct: 603 REKIFLSWAQSR 614 >gi|242242257|ref|ZP_04796702.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis W23144] gi|242234273|gb|EES36585.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis W23144] Length = 1218 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 112/600 (18%), Positives = 211/600 (35%), Gaps = 47/600 (7%) Query: 91 KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 K L K+K + + ++ + + + + K+ +LDF Sbjct: 307 DKYKSLVMKVKNDYFSRNADDLKRDMQQLAPRVAYLAQIVQDVIHSFGVQKRSRNILDFS 366 Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 D +L D + I + IL+DE QDT+ +Q +++ + K Sbjct: 367 DYEHFALCILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 LF VGD KQSIY F A+P + + T++G I+L +FRS + Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTDSGL---RIDLSQNFRSRQE 476 Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327 +L+ + +F E +S D + + VQL V + ++ Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDKVSHPVQLRALVEASSEN------- 529 Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385 + + A I + ++I ++ G+ R KDI++L R Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580 Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 + + I N + + ++ +++ R I + D+ V +++S + Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636 Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499 + F+E+++ KI + Y+ I+ + K I+ I + + +Q Sbjct: 637 YQFTEEELAKIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696 Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 + Q F G + L N + E +S+ L + I +++ Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756 Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 K N N VR+MT+H++KGLE P V + + + Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + +K E RL+YV +TRA +QLI+ Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLVYVALTRAKEQLILVGRVKDEKS 876 >gi|319427815|gb|ADV55889.1| DNA helicase II [Shewanella putrefaciens 200] Length = 722 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 188/551 (34%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I ++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R + T+++ + A S + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRTTARQQDLTLWQACLRLLDEKVLAGRAASAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I L Q + + ++ A + + + G + + L+E + E Sbjct: 463 DLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|16125775|ref|NP_420339.1| DNA helicase II [Caulobacter crescentus CB15] gi|13422909|gb|AAK23507.1| DNA helicase II [Caulobacter crescentus CB15] Length = 805 Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats. Identities = 102/604 (16%), Positives = 182/604 (30%), Gaps = 120/604 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L Y+E + DF DL+++ L + + Q ++++DE QDT++ Q Sbjct: 209 LYRQYQERLRILNACDFGDLLLHNISLFTGHPD---VLDEFQQRFKYVMVDEYQDTNVAQ 265 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R L + + + VGD+ QSIY + GAE +LR +R Sbjct: 266 YLWLRLLAQ----------GRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------- 308 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++ L ++RST IL + + + G + LW Sbjct: 309 -GAKVVRLECNYRSTEHILAAASGLITANKGRLGKT---------------------LW- 345 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 ++ + +D + R IA I + Sbjct: 346 ------TPSKGGEKVKVSGVWDGEAES-------RLIADEIERAKKAGR----------K 382 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + +LVR L+ I + I+D A R I S + Sbjct: 383 YSQMAILVRASFQMRAFEERFVLLQ----IPYKVVGGPRFFERAEIRDAHAYLRLIQSPD 438 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DDL+F ++ +P + + K+ R + E + + + + I Sbjct: 439 DDLAFERIVNTPKRGIGDTSVQKLLQIARLGGISTVEAARQIITSDELPARTRTALSNFI 498 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542 + + + +L G ++ L E + + Sbjct: 499 RDLDRWRSLVGTAHHQRLLETVLEESGYTDALRLDKGPTSQTRLENLKELVQSMGAFDT- 557 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L + LE + A + V IMT+H+AKGLE P+VFL VF + Sbjct: 558 -------LEAYLEHVSLVMDLDREATGDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQR 610 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + + EE RL YVG+TRA ++ Sbjct: 611 S--------------------------------MDDKGEKGLEEERRLAYVGITRAREEA 638 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 I +N + + V + P + Sbjct: 639 RISFVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTS 698 Query: 723 PLER 726 + Sbjct: 699 AFQA 702 >gi|77164123|ref|YP_342648.1| DNA-dependent helicase II [Nitrosococcus oceani ATCC 19707] gi|254435365|ref|ZP_05048872.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] gi|76882437|gb|ABA57118.1| ATP-dependent DNA helicase UvrD [Nitrosococcus oceani ATCC 19707] gi|207088476|gb|EDZ65748.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] Length = 717 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 114/736 (15%), Positives = 224/736 (30%), Gaps = 134/736 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + ++ +N + + + L + Sbjct: 30 GAGSGKTRVLVHRMAWLIRSQGIAPVNLLAVTFTNKAAGEMRGRIEELLETPVGGMWVGT 89 Query: 66 FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F ++ L Q+ ++ + + ++ L+ + + R Sbjct: 90 FHGIAHRLLRAHWQEAQLPQDFQILDSEDQYRLIRRILQNLNLDESRWPPRQAQWFINSH 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + T + + Y+ +++ ++DF +L++ ++LL+ A + Sbjct: 150 KDKGLRPQHLEEGTNPHVRQQIRIYHDYQSHCERSGLVDFAELLLRAHELLRDH---AHV 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 H+L+DE QDT+ IQ+ +R L LF VGD+ QSIY + Sbjct: 207 LQHYQNRFTHVLVDEFQDTNAIQYAWLRLLAGH----------QGELFIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + R + L ++RST IL + V + G + Sbjct: 257 RGAQIENIQQLSRDFPA--------IRTLRLEQNYRSTGVILAAANAVIANNTERLGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + F+ + A I Sbjct: 308 --------------------LW-------TESEDGEPIQIYQAFNERDE-------AHFI 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + D VL R + ++ I + Sbjct: 334 TERIHAWKAQGGMG----------ADTAVLYRSNAQSRIVEAALVE----AGIPYRVHGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IKD +A R + Q DD +F ++ +P E + ++ R ++++ Sbjct: 380 LRFFERAEIKDALAYLRLVTHQNDDSAFERIVNTPPRGIGERTLSQVREHARQAGVSLWQ 439 Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 Q + +H + + S +L + G Sbjct: 440 ATVQLVAQQHLPGRSATALRHFHSLMERMATDIMGLSLPAQIESVLDHSGLLNHYRKDRG 499 Query: 523 N---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 +D L E +N + + SL+ L L + V++MT+H Sbjct: 500 EKSQSRLDNLKELINAASQF-KPEDPSLETLSEFLAHAALESGGTQAEGWEDCVQLMTLH 558 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 AKGLE P+VF++ +F + Sbjct: 559 AAKGLEFPLVFMIGMEEGLFPSPQSRNEPG------------------------------ 588 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 EE RL YVGMTRA L + Q + + + E+ Sbjct: 589 ----RLEEERRLCYVGMTRAQRHLYLIYATRRWLYGSDSYPQPSRFLHEIPTELTSEQQP 644 Query: 697 KIKLTNSINKDEWIAY 712 I + + + A Sbjct: 645 HIDIIHPGGAPQPTAP 660 >gi|58698849|ref|ZP_00373722.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila ananassae] gi|58534628|gb|EAL58754.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila ananassae] Length = 450 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 151/476 (31%), Positives = 246/476 (51%), Gaps = 28/476 (5%) Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 + +I T+ I +K D ++ ++ Q+ N+Y++FK T + L + K Sbjct: 3 EKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQIFKRTSSLLGVFKVYVDL 62 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y K KN +LD+ D+I +LL D W+ + +DQ+I+HIL+DE QD S+ QW++I Sbjct: 63 YNSEKSKNALLDYNDIIDLATNLLSDPDHKDWVLFNLDQKIDHILVDEAQDNSISQWKII 122 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 +L ++FF G + RTLF VGD KQSIY F GA P ++ + G+ + Sbjct: 123 TNLCDEFFAG---NDEKRTLFVVGDVKQSIYRFQGANPHLFNYMQQYFHTKTG--GRDWI 177 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 +L SFRST ++L +VD++F+ + + I+H R G +++W + Sbjct: 178 SCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFNDNEIKHVPHRENDQGYIEIWPALPR 234 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 + + + Q T + +LA+ IA I N + I K R I+ +DI Sbjct: 235 RKEKEQRALQIPLTC---KEGYTIADRLLAQTIANRIHNWLNEGRIL-VAKDRHIEPRDI 290 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 ++LVR ++ + VVG D F + D++A++DL+AL F+L Q +DL+ Sbjct: 291 MILVR---QRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQDLIALAEFLLLQANDLA 347 Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496 LKSPLFNF+EDD+F I R E +++E IQ ++ S+ ++ LI++++ Sbjct: 348 LANALKSPLFNFTEDDLFNIAYDRKEH-SLWERIQDYSVVIYSE-------LNYLINLSR 399 Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552 SP FT IL G+++F +R G E +VLDEF+N L+ E SLQ + Sbjct: 400 TESPLALFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQFEN---PSLQAFVQ 450 >gi|269137484|ref|YP_003294184.1| DNA-dependent helicase II [Edwardsiella tarda EIB202] gi|267983144|gb|ACY82973.1| DNA-dependent helicase II [Edwardsiella tarda EIB202] gi|304557557|gb|ADM40221.1| ATP-dependent DNA helicase UvrD/PcrA [Edwardsiella tarda FL6-60] Length = 719 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 114/693 (16%), Positives = 213/693 (30%), Gaps = 131/693 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLAVENCSPFSIMAVTFTNKAAAEMRHRIEALIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + LK +K + + R Sbjct: 90 FHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + Y+EA + ++DF +L++ ++L + I Sbjct: 150 KDDGLRPQHIESYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLHKP---QI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 N+IL+DE QDT+ IQ+ IR L D + VGD+ QSIY + Sbjct: 207 LEHYRARFNNILVDEFQDTNRIQYAWIRMLAGD----------SGRVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + I L ++RS+ +IL + + + G Sbjct: 257 RGAQVENIQKFLDDFP--------GAQTIRLEQNYRSSGNILRAANALIENNDGRLGKK- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TEDGEGEPISLYCAFNELDE-------ARFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I K+ +L R + ++ Sbjct: 334 VNRIKAWQDNGGAL----------KECAILYRSNAQSRVLEEAL----LQAATPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD +A R + ++ DD +F ++ +P+ + + + R T+++ Sbjct: 380 MRFFERQEIKDALAYLRLLSNRNDDAAFERVVNTPVRGIGDRTLDVVRQTARDRQLTLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + ++ I L + H ++ RQ + G Sbjct: 440 ATRALLQEQVFPGRAANALRRFLELIEALAQDSDDLPLHVQTDRVIRDSGLRQMYEQEKG 499 Query: 523 N---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 I+ L+E + T + L L + L + A + V++MT+H Sbjct: 500 EKGQTRIENLEELVTATRQFSYEDDDDLSPLQAFLSHAALESGEGQADAYQDAVQLMTLH 559 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P VF+V +F + Sbjct: 560 SAKGLEFPQVFIVGMEEGMFPSQMSLDEGG------------------------------ 589 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L + + Sbjct: 590 ----RLEEERRLAYVGVTRAMRKLTLTYAESRR 618 >gi|157148363|ref|YP_001455682.1| exonuclease V subunit beta [Citrobacter koseri ATCC BAA-895] gi|157085568|gb|ABV15246.1| hypothetical protein CKO_04185 [Citrobacter koseri ATCC BAA-895] Length = 1181 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 114/876 (13%), Positives = 262/876 (29%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q + + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIEELLAEPLTIKDLLITRALAEIRETVAQEKQRRGELGFDDMLSRLDVALRSN 365 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + I +IDE QDT Q+ + R + H L +GD K Sbjct: 366 S-GDALASAIRGRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+ +FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNTLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + + P W +S S Sbjct: 467 AFMFREIPFAPVKSAQKNQS----------LRFVLNGETQPAMNMWLMEGESCGIGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ I L Sbjct: 517 YMAQVCATQIRDWLKAGQTGDALLVSEKTSRPVRASDISVLVRSRQEAAQIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + + + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWILQAVMTPERENTLRSAMAASMMGLTAQDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLSQHILEPDSNAASQQLRLESDKHLVK 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + + + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------NSFDAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + ++ + E RLLYV +TR+ + + + +Q ++ Sbjct: 785 ESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS-- 745 D + + +D E +++P + Sbjct: 845 GEPKDAAGLRACIDALCGEDITCRTPAEPDSERWQVTEASRAALSARALRRMPADNWRVT 904 Query: 746 ----------PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 + D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQQGHSVAQDLIPRLDVDAAGVGDVVEEPELTPHQFPRGASPGTFLHSLFEDLDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVS 852 L ++ + + + + E++ Sbjct: 965 TQPVDPAWVREKLELGGYDAHWEPVLTQWLDAVLQAPLTERGVSLRHLSAREKQVEMAFY 1024 Query: 853 GKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKTH 886 I P ++ G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLIASQLDALIRRFDPLSAGCPPLDFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084 Query: 887 HHVPQEIEHIPY---------THIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSTAYTQEAMASAMQAHRYDLQYQLYTLALHR 1120 >gi|298489453|ref|ZP_07007464.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156027|gb|EFH97136.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 727 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 118/661 (17%), Positives = 214/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFAHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|157827215|ref|YP_001496279.1| DNA helicase II [Rickettsia bellii OSU 85-389] gi|157802519|gb|ABV79242.1| DNA helicase II [Rickettsia bellii OSU 85-389] Length = 653 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 113/561 (20%), Positives = 192/561 (34%), Gaps = 121/561 (21%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 L +AK + Y++ + V+DF DL++ N+L K I + +ILI Sbjct: 165 NLPLQRVAKLVYEEYQQNLLISNVVDFGDLLLYNNELFIKNPD---ILKHYQERYRYILI 221 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+++Q+ R L S + + VGD+ QSIY + GAE +LR ++ Sbjct: 222 DEYQDTNVVQYLWARMLA----------SLSKNICCVGDDDQSIYGWRGAEVGNILRFEK 271 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 +II+L ++RST IL V + +N G + Sbjct: 272 DF--------LNATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------------- 309 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 LW D + + + + + D AR IA I+ ++ Sbjct: 310 -------LW------TDKESGEKIKIISCWNDKEE--------ARYIAAEIAILVREGR- 347 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 A +I +LVR T + + + + I+D++ Sbjct: 348 --------YSAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERMEIRDVL 395 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK- 480 A R L+Q D+L+ ++ P + KI + + + I++ G K Sbjct: 396 AYIRIALNQNDNLALERIINVPKRAIGAVTLNKIKLYAIEKNISNFAAIKEMLEDGEIKT 455 Query: 481 -----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + ++ I F +P + IL + E I+ ++E Sbjct: 456 KSYETLKDLVTKISNWHERFSFDAPINVTKAILDDSGYLEMLQEEKTEEALGRIENINEM 515 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFL 590 L ++ +E ++ V IMT+H AKGLE VVFL Sbjct: 516 LRAIAEF--------NDIHDFIEHSSLVMENESLETSYGGSVTIMTLHGAKGLEFDVVFL 567 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 VF + L ++ R+ Sbjct: 568 PGWEEGVFPSQRSLDEEGEKGLEEE--------------------------------RRI 595 Query: 651 LYVGMTRASDQLIICKHSNTS 671 YVG+TRA +L I + Sbjct: 596 AYVGITRAKKELYITHAESRK 616 >gi|229821506|ref|YP_002883032.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333] gi|229567419|gb|ACQ81270.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333] Length = 829 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 120/805 (14%), Positives = 219/805 (27%), Gaps = 137/805 (17%) Query: 8 SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + + P VS + + + L+ + + Sbjct: 118 AAAEMRERVEALVGPPARAMWVSTFHSACVRILRREHA-----VLGLRSSFSIYDAADSL 172 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L++ P K + + DLK +L D + Sbjct: 173 RLMTLVCRELGLDP-KRYPPKAFIHRVSDLKNEL----------VDPDAFAAGVGGSNPY 221 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 Y + ++ LDF+DLI+ T +LL+ + + H+L+DE Q Sbjct: 222 EENLAEAYRMYAQRLRQANALDFDDLIMTTVNLLQAFPA---VAEHYRRRFRHVLVDEYQ 278 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS-----------PRTLFAVGDEKQSIYSFHGAEPK 235 DT+ Q+ ++R L + P L VGD QSIY+F GA + Sbjct: 279 DTNHAQYVLVRELAGVATQAYDDGGDSDLDRGPAPVLPAELTVVGDADQSIYAFRGATIR 338 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 +L + + I L ++RST +IL+ + V + + + + + Sbjct: 339 NILEFEADYP--------DATTILLEQNYRSTQNILSAANAVIARNPDRKAKNLWTA--- 387 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 + P+ + + D AR +A I Sbjct: 388 ------------------------AGAGPKIIGYVADSDHEE--------ARFVAEEIDR 415 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + G ++ D+ V R + + + I + Sbjct: 416 L---------GDASGVRPGDVAVFYRTNAQSRALEEVL----IRAGIPYKVVGGTRFYER 462 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--- 472 +KD +A R I + +D ++ +L P E I + + Sbjct: 463 REVKDAIAYLRAIANPDDAVNVRRILNVPKRGLGERSEAVIAAYAERERISFGAALEAAA 522 Query: 473 ----FANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524 A + + + +L + A +P + L + + + Sbjct: 523 DVPGLATRALGIVTEFARLLADLRAMAAGGATPAEVLDSALDRSGYLAELRASDDPQDAT 582 Query: 525 VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKG 582 ++ L E + L + + + A+ V +MTVHTAKG Sbjct: 583 RVENLAELHAVAAEFSEADPDGDLGDFLERVALVADTDQLPDDDASGGVVTLMTVHTAKG 642 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVF+ F H + Sbjct: 643 LEFPVVFVTGLEDGTFPH----------------------------------ARSLADPA 668 Query: 643 TQEEYNRLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 E RL YV +TRA ++L I + + D R + + Sbjct: 669 ELSEERRLAYVALTRARERLYISRAAVRTAFGVPHELPASRFLDDIPDELLDWRRAESSM 728 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 T T ++ + Sbjct: 729 QQLRGSWGSGGVGSGRVRSGATGGTGPRTAPSQATGATFGSATPRADVPSLDVGDRVTHD 788 Query: 761 TIDTKGKTNLESLLSDNQT-FNRGL 784 LE S + G Sbjct: 789 AYGLGTVVALEGAGSSQVAKIDFGT 813 >gi|114707166|ref|ZP_01440064.1| DNA helicase II [Fulvimarina pelagi HTCC2506] gi|114537362|gb|EAU40488.1| DNA helicase II [Fulvimarina pelagi HTCC2506] Length = 849 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 115/675 (17%), Positives = 205/675 (30%), Gaps = 114/675 (16%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 + A + L A Y+E + DF DL+++ + + + + +IL+ Sbjct: 192 SRAFAGKGRDLYAAYQERLRTLNACDFGDLLMHPIAIFRAHPD---VLADYHRRFRYILV 248 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q+ +R L + GK+ +P + VGD+ QSIY + GAE +LR + Sbjct: 249 DEYQDTNTAQYLWLRLLAQ--RPGKDNEQAPVNICCVGDDDQSIYGWRGAEVDNILRFDK 306 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 ++I L ++RST IL + E+ G + + Sbjct: 307 EFST--------ATVIRLERNYRSTGHILGAASHLIGHNEDRLGKTLFTDHPDP------ 352 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + AR I I ++ + Sbjct: 353 ---------------------------EDPKVEVNAGWDSEEEARAIGEAIEDLQRRE-- 383 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 D+ +LVR + ++ + + I+D + Sbjct: 384 -------NHNLNDMAILVRASFQMRTFEDRFVTM----GLNYRVIGGPRFYERMEIRDTL 432 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFAN 475 A R + DDL+F ++ +P + I + R + ++ Sbjct: 433 AYFRCVCQPADDLAFERIVNTPKRGLGDATIRLLHEYARERQIPLIPAALEIVETEELKP 492 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 + + V+ + + + IL + + + E ++ L E Sbjct: 493 KPRNALRRVVLDMKRWSELLPSTKHTELAEQILEESGYTEMWQNDRSAEAPGRLENLKEL 552 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 + E L S LE + +A + V IMT+H+AKGLE VFL Sbjct: 553 IRSMEEYES--------LPSFLEHVALVMDTEQNAEMDAVSIMTLHSAKGLEFDTVFLPG 604 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F H+ + +S EE RL Y Sbjct: 605 WEEGLFPHQR--------------------------------ALDEGGRSGLEEERRLAY 632 Query: 653 VGMTRASDQLIICKHSNTS----NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 VG+TRA + I SN + R ++ E + Sbjct: 633 VGITRAKRRAKIWFVSNRRIHGLWQSTIPSRFLDELPDAHVDVMEANTSYGGYGAGGFGG 692 Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768 + A W N R K+ + E + T G+ Sbjct: 693 YGASRWDGAAAFNEGAYRTPGWKRAQAAKASQGGGDGWSGGRTREITYESDQTSGFSGRF 752 Query: 769 NLESLLSDNQTFNRG 783 + +RG Sbjct: 753 TAD-GAERQGRASRG 766 >gi|255067137|ref|ZP_05318992.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256] gi|255048505|gb|EET43969.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256] Length = 666 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 204/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE L K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 126 KEALFKAQHQISLWKNDLKTPEDMLQTTSNAWEEQIARVYASYQETLQSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q++ Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 A + I ++G D Q D VL R + Sbjct: 318 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R ++ + D IKD+++ R + + DD +F+ + +P + Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ + Sbjct: 417 LGKLNTYAHEHECSLYEAAQNEEALALLNNTNRQHLQAFMDMFGSYRAKAETSEAGELIN 476 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + + R + ++ EL + Sbjct: 477 SLLKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQDGKNIIELAQTVALMTLLE 536 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V++ T+H +KGLE P VFLV + H Sbjct: 537 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 620 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 621 SRFIDEMPQED 631 >gi|253995787|ref|YP_003047851.1| UvrD/REP helicase [Methylotenera mobilis JLW8] gi|253982466|gb|ACT47324.1| UvrD/REP helicase [Methylotenera mobilis JLW8] Length = 736 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 98/633 (15%), Positives = 204/633 (32%), Gaps = 125/633 (19%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + F +L ++ + K P K+ Q+ +D Sbjct: 103 LRAHHREAGLPASFQILDIADQLSMIKRLMKLMNVDDEKFPP------KQVQNYINGCKD 156 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + + + Y++ +++ V DF +L++ +LL++ IR Sbjct: 157 EGLRAHAVDAYDPHSQKLREIFEEYDKQCQRDGVADFAELLLRCYELLERD---TNIRQH 213 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 +IL+DE QDT+ +Q++ ++ L +FAVGD+ QSIY F GA Sbjct: 214 YQSRFRYILVDEFQDTNRLQYQWLKLLAG----------KDNCMFAVGDDDQSIYGFRGA 263 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + SI++L ++RS ++IL + + S +N G + Sbjct: 264 RVGNMRDFETDFNVQ--------SIVKLEENYRSHSNILDAANAIISHNKNRLGKNL--- 312 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + G V++++ + A+ I Sbjct: 313 ------WTSAGAGEPVRVYQAYNDNDE--------------------------AQFIVDE 340 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I + T + ++ +L R + ++ + Sbjct: 341 IKMLHAEGT----------ELGEMAMLYRSNAQSRVLEHAL----FSANLPYRVYGGLRF 386 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY-- 469 + IK +A R I + DD + + ++ P + ++ R ++++ Sbjct: 387 FERAEIKHALAYMRLIANANDDTALLRVINFPARGIGARSLEQLQEAARAGNCSLWQAAI 446 Query: 470 -IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVID 527 G + I +++ A S + L + + + G + I Sbjct: 447 NKVGNGKVGGKGIDGFVALIRQMVDEAYGISLAELAELATTLSGLKAHYQNEKEGEDRIA 506 Query: 528 VLDEFLNFTLRNEQNSYSSLQE---------LISELEQYPPTI-KRAHSANHNEVRIMTV 577 L+E + + + + L L + +++MTV Sbjct: 507 NLEELVTAAVAFTNQDFGNHSNADGETEQDLLTQFLSHASLEAGEHQADVGREALQLMTV 566 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H +KGLE VVF+ + H+ Sbjct: 567 HASKGLEFKVVFISGLEEGLCPHEQST--------------------------------- 593 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + + EE RL+YV +TRA +L + + Sbjct: 594 -YEANGLEEERRLMYVAVTRARQRLYLSHAQSR 625 >gi|254304235|ref|ZP_04971593.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324427|gb|EDK89677.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 737 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 106/546 (19%), Positives = 181/546 (33%), Gaps = 117/546 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y +A ++ +DF D+++NT LL+K + I K+ + +I+IDE QDT+ + Sbjct: 169 EVYDKYNKALLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 224 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I + L VGDE QSIY F GA +L + Sbjct: 225 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYNN----- 269 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I++L ++RST IL +++ ++++ LW Sbjct: 270 ---AKIVKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 305 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + S RI I + Sbjct: 306 -------TQNGKGDLIKVLACDNGRDEVS-------RIIEFIRENHQNG----------V 341 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +D+ +L R + + Y I IKD++A I++ Sbjct: 342 PYRDMTILYRTNAQSRIFEEGL----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 397 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484 +D+L+ ++ P E I KI R + E + K + Sbjct: 398 QDELNLQRIINVPKRKVGEKGIEKIIAYARENDLNLLEALSHIKEISGLTAVGKEKLLEM 457 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542 I EL +A + ++ I+ +DEF N L E Sbjct: 458 YDIIKELKDLAYTETASYIVQTLIDKIHYIDYINENYDDAEARIENIDEFKNSILELE-- 515 Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L LE + + V++MT+H +KGLE P+VFLV +++F Sbjct: 516 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGT 575 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 L + EE RL YV +TRA + Sbjct: 576 ----------------------------------RAMLDEKEMEEERRLCYVALTRAEKK 601 Query: 662 LIICKH 667 L + Sbjct: 602 LYLSHA 607 >gi|289428125|ref|ZP_06429828.1| UvrD/REP helicase [Propionibacterium acnes J165] gi|289158725|gb|EFD06926.1| UvrD/REP helicase [Propionibacterium acnes J165] gi|313807183|gb|EFS45676.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2] gi|313825512|gb|EFS63226.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1] gi|327327125|gb|EGE68904.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL096PA3] gi|327443750|gb|EGE90404.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2] Length = 1072 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 148/995 (14%), Positives = 297/995 (29%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRGHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + I Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|313668563|ref|YP_004048847.1| ATP-dependent DNA helicase [Neisseria lactamica ST-640] gi|313006025|emb|CBN87484.1| ATP-dependent DNA helicase [Neisseria lactamica 020-06] Length = 671 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 113/611 (18%), Positives = 204/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E K +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVLQTASNIWEQQTARVYASYQETLKSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFVLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +++L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D IQ D VL R + + Sbjct: 314 ---ACQNEQHEAEWVVSEIVKQKLIGGD---------KIQYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + +DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPDDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALAALNNTNRQHLQAFMDMFGNCRAKAETGDTGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + E +++ R ++ EL + Sbjct: 478 SLLKEIGYENHLMQNEEGKAGEIKWRNVGELVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEEADAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA +L + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRRLTLTHCVKRKKQGIWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|224826111|ref|ZP_03699214.1| UvrD/REP helicase [Lutiella nitroferrum 2002] gi|224601748|gb|EEG07928.1| UvrD/REP helicase [Lutiella nitroferrum 2002] Length = 715 Score = 276 bits (706), Expect = 1e-71, Method: Composition-based stats. Identities = 103/630 (16%), Positives = 195/630 (30%), Gaps = 112/630 (17%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + Q+ ++ + A L A Y+ ++ V+DF +L++ + ++L Sbjct: 138 RAVQNFINGNKESGVRADALSAHDAYTKKLIELYAAYDAQCQREGVVDFAELLLRSYEVL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + A + IL+DE QDT+ +Q+ ++ L LFAVG Sbjct: 198 SRN---AALAEHYKSRFRFILVDEFQDTNRLQYAWLKLLAG----------RDNALFAVG 244 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GAE + + L ++RS +ILT + + Sbjct: 245 DDDQSIYAFRGAEVGNMRSLLVDFGIDGP--------VRLEQNYRSAGNILTAANALIEK 296 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + LW ++ + +Y D Sbjct: 297 NDGRLGKN---------------------LW------TEAGEGEPIRLYDAYSDGDE--- 326 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I + + + DI VL R + + + Sbjct: 327 -----AEFICDEVKALQRDG----------WRLSDIAVLYRSNAQSRALEHAL----VNA 367 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ- 459 K+ + IK +A R I + +DD + + ++ P + + Sbjct: 368 KLPYRVYGGLRFFERQEIKHALAYLRLIANPDDDNALLRVINIPARGIGARTVEGLQAAS 427 Query: 460 RHETETVYE-YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 R + ++++ + + + I +L + + +L+L + + Sbjct: 428 REQGISLWQAACASGSGRAAASLGKFVLLIDQLRARTSTLNLAETVSLLLDDSGLKAMYE 487 Query: 519 SRF--GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575 + E + LDE +N Q ++ L + A + +++M Sbjct: 488 ADKKESEERLANLDELINAAAGFFPQDPE--QAVVEFLSAASLEAGEHQAEAGQDALQLM 545 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 TVH AKGLE VF+ +F H++ Sbjct: 546 TVHAAKGLEFDAVFVSGLEEGLFPHENSFNDP---------------------------- 577 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 EE RL+YV +TRA +L + + S V + V Sbjct: 578 ------KGLEEERRLMYVAVTRARKRLYLSSAQSRMLHGLSRYPIRSRFVDEVPGQLLHV 631 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 + W P + P Sbjct: 632 -LSATVKPLPVSHNARAPWLEQPPPSRPSA 660 >gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127] gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127] Length = 727 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 106/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +K+ + + G + LW Sbjct: 277 -KAETIRLEQNYRSTANILNSANKLIANNSDRLGKN---------------------LW- 313 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 613 KLTISYAESRR 623 >gi|227357154|ref|ZP_03841523.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906] gi|227162686|gb|EEI47653.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906] Length = 718 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 117/724 (16%), Positives = 221/724 (30%), Gaps = 132/724 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L Q S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + + ++ +K + + R Sbjct: 90 FHSLAHRLLRAHYLDAGLPQDFQIIDSDDQYRLIRRIVKSMALDDKQWPPRQGMWYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + T + Y+EA + ++DF +L++ ++L + I Sbjct: 150 KDEGLRPQHIQTYGNPVETTWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 +IL+DE QDT+ IQ+ IR L + VGD+ QSIY + Sbjct: 207 LEHYQHRFTNILVDEFQDTNRIQYAWIRMLAGQ----------TGKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + I L ++RST++IL + + + + G + Sbjct: 257 RGAQVENIQNFLNEFP--------GAETIRLEQNYRSTSNILKAANALIANNSDRLGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TEGAEGEPISLYCAFNDLDE-------ARYV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D +L R + ++ + Sbjct: 334 VGRIKRWHEEGGAL----------ADCAILYRSNAQSRIMEEAL----LQANMPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD ++ R ++ DD SF ++ +P + + + R T++E Sbjct: 380 QRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIGDRTLDVVRQVARDNQITLWE 439 Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + A I+ ++ I L + H I+ + + G Sbjct: 440 SALQVIEHKMLAGRAIAAIARFLELIETLANETADMPLHVQTDRIIRDSGLKAMYEQEKG 499 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTV 577 + + L+E + T + Q+ L L + L A + V++MT+ Sbjct: 500 EKAQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAALESGEGQADAYQDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE VF+V +F + Sbjct: 560 HSAKGLEFSQVFIVGVEEGMFPSQMSLDEGG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA +L + N K + + + Sbjct: 591 -----RLEEERRLAYVGVTRAMKKLTLTYAENRRLYGKEVSHRPSRFIGELPKECVEEVR 645 Query: 698 IKLT 701 ++ T Sbjct: 646 LRAT 649 >gi|291544571|emb|CBL17680.1| ATP-dependent DNA helicase PcrA [Ruminococcus sp. 18P13] Length = 781 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 97/584 (16%), Positives = 182/584 (31%), Gaps = 119/584 (20%) Query: 94 PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153 + ++ +++D+ + LA + Y+ KK+ +DF+D+I Sbjct: 188 KSILGEISRAKDKLLDPDQLEAQASGDYRRLAI----AKIYREYQNRLKKSNAVDFDDII 243 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 T + + + K + +IL+DE QDT+ Q+ ++ L+ + Sbjct: 244 RLTVQIFSEFPDA---LEKYRSKYKYILVDEYQDTNQAQFRLVSLLSA----------AH 290 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 + L VGD+ QSIY F GA + +L + +I L ++RST IL Sbjct: 291 QNLCVVGDDDQSIYKFRGATIENILNFEEQF--------TGSKVIRLEQNYRSTGTILDA 342 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + V + + LW + W Sbjct: 343 ANSVIRHNRSRKEKK---------------------LW-------TQGDKGSKIYWYRAM 374 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + + + A+ +A TI + + VL R + ++ Sbjct: 375 NEMDE-------AKFVAQTILEHVQQGS----------TYSSHAVLYRMNAQSNMLERAF 417 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 + D IKD+ A I + D L F ++ P + + Sbjct: 418 ----VQSGVPYRVYGGMRFFDRKEIKDITAYLSVIDNSNDMLRFRRIINEPKRGIGDATL 473 Query: 454 FKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 + + + + A + + V K L A+ +FF L+ Sbjct: 474 SMLDDITRDLGLSPMEVLRNAGDYPVLSKKAASLRSVAKMFDALTEAAETLPLDEFFDLL 533 Query: 508 LGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRA 564 L + + G ++ ++E + L E +L + E+ Y + Sbjct: 534 LEKTGYKAMLTAMGDEGVTKLENVEELKSTLLTYMEGAEEPTLSGFLEEISLYTDQDRN- 592 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + V +MT+H+AKGLE VFL+ +F + Sbjct: 593 -EEADDAVTLMTIHSAKGLEYDTVFLIGMEDGIFPGVRSMESEESLEEERRL-------- 643 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 YV +TRA QL + + Sbjct: 644 --------------------------AYVAITRAKRQLYLVSAA 661 >gi|193065093|ref|ZP_03046167.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E22] gi|194426185|ref|ZP_03058740.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B171] gi|260845482|ref|YP_003223260.1| exonuclease V, beta subunit RecB [Escherichia coli O103:H2 str. 12009] gi|192927224|gb|EDV81844.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E22] gi|194415493|gb|EDX31760.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B171] gi|257760629|dbj|BAI32126.1| exonuclease V, beta subunit RecB [Escherichia coli O103:H2 str. 12009] Length = 1180 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 299/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S ++ S Sbjct: 215 DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ +V Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK----------SVG 482 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + + P + W +S S +A+ A I + + + + Sbjct: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 720 ENTPLER------EETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + + E + + + D+ ++ + + Sbjct: 873 GDKQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|330880966|gb|EGH15115.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. race 4] Length = 727 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L GD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVGGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L A H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKAMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|90581055|ref|ZP_01236855.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14] gi|90437751|gb|EAS62942.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14] Length = 723 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 102/549 (18%), Positives = 177/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ + +LL+ IR HIL+DE QDT+ I Sbjct: 172 RIYTAYQEACDRAGMVDFAELLLRSYELLRDN---KHIREHYQARFKHILVDEFQDTNSI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + R Sbjct: 229 QFAWLRLMAG----------PDCHVMIVGDDDQSIYGWRGAKIENIQRFLNEF------- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + S I L ++RST +IL +++ + G LW Sbjct: 272 -KDASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S F+ L + AR I Sbjct: 310 -------TDGGEGEPISLYSAFNELDE-------ARFAVGKIKEWRDQGGSL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + L R + ++ + + IKD ++ R I ++ Sbjct: 348 --NETAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLISNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484 DD SF ++ +P + + I R T+++ + + Sbjct: 402 NDDASFERVVNTPTRGLGDRTLETIRLAARDRGLTMWQSSIALLEEQVLAGRAANSLRRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE- 540 I+ I+ L + ++ R + G + + L+E + T + E Sbjct: 462 IELINALEDDTADLPMYQQTDEVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFEI 521 Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + S + V++MT+H+AKGLE PVVF+V +F Sbjct: 522 PEEAESMTPLAAFLAHAALEAGDGQADDFEDAVQLMTMHSAKGLEFPVVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVGMTRA Sbjct: 582 SSRTT----------------------------------EEVGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 +L I Sbjct: 608 QKLYITYAE 616 >gi|157375075|ref|YP_001473675.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3] gi|157317449|gb|ABV36547.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3] Length = 1251 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 149/982 (15%), Positives = 312/982 (31%), Gaps = 144/982 (14%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 K +WP + + + LS KKA + + + + S+ Sbjct: 251 LKLIWPRERDAIETLLHALPLS----GVRFGKKADAYPKLAIMLDAMDNWCKFSNSLPPM 306 Query: 77 KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136 K ++ ++NK E Q + +R ++A Sbjct: 307 KVMESLSLSELKLNKGG----EVPTPEQAPVLDHIERLCALIKDFIPSFLFCARNGISAR 362 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLI 191 + + K + +L +DL+I L+ + + I + LIDE QDT + Sbjct: 363 FAQQKSERNLLTPDDLLITLEQALRPNQEEVSGQAISLANTIAKRFPVALIDEFQDTDPL 422 Query: 192 QWEVIRSLTED---------------FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 Q+ + + + T S +L +GD KQ+IY+F GA+ Sbjct: 423 QFAIFNRIYQQPSVDAMGSDDSLIAIDEATAGTSSKNLSLLMIGDPKQAIYAFRGADIHT 482 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 ++ + Q L ++RS+ +++ V+ +F ++A ++ Sbjct: 483 YIQAR----------EQTSEHYNLDTNYRSSRNMILAVNALFENRDDAFISQAIPFESVL 532 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 + V + + L + ++ LA A I+ + Sbjct: 533 PSPFADNK-------VLVEKSTTTSALKIKLLSEDPEKGLNKTTARKHLAEDAASEIARL 585 Query: 357 I-GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + + ++ ++AKDI VLVR R + + + ++ +I V R + + Sbjct: 586 LTESQDGECTISEKPLKAKDIAVLVRDRNEAA----VIKESLSNRQIGAVFLSRDSVFNT 641 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475 L +++ + + + +D+ + L + L ++ I +T+ E + Sbjct: 642 LEAREMALVLHALATPKDERALRSALATSLLGYNALAIHGFNQDEMVRQTLLEQFDGLHH 701 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535 + + + L+++A +L ++ G ++ L E L Sbjct: 702 NWLRR-----GVMPALLNLANETK---LIERLLQSEDGERRLTD------FRHLAELLQQ 747 Query: 536 TLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 + + L++ E + + N V+I+T+H +KGLE PV F Sbjct: 748 ----KATELDGISALVNWYEQALIENHANEEAQLRLESEQNLVQIVTIHKSKGLEYPVCF 803 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 + + P L + +W + + K+ E R Sbjct: 804 IPFVSLA-----RDNRRKPAPMLYHENNKLVWDIEQSDEG------WERHKRENLAEDLR 852 Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD-----MVYDSFHNDERVKKIKLTNSI 704 LLYV MTR Q + ++ KK+ + + I+ + Sbjct: 853 LLYVAMTRPVYQCYLYIANHCRFTKKAGITSQLHETGIGYLLGIEEKACEFSLIETSAKR 912 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN--------DINEPYI 756 E I+ + LE+ ++L+ + + ++L++P + D+ + Sbjct: 913 LMSEAISVCEMADDVSSQVLEKMSDDQELLAPKVLKRRLYTPWRVGSYSGLVKDLPHERV 972 Query: 757 LNPSTIDTKGKT--------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808 L + + + L S + + N G +H +L++I + + Sbjct: 973 LPGADDEAFPELEEIKDELDPLPSRFTFERGANAGSFMHLVLELI-DFTQAENGLTEQLP 1031 Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENP-------MMTTAMSCDSYSEVSVSGKINCPKKD 861 L LL+ P + + E+ I K D Sbjct: 1032 VAMERYGIDESWLDVLTHWYLDLLDAPIVQDGSLKLGQLTNNQKLVEMEFYLPIAALKAD 1091 Query: 862 ---------------------IIISGRIDQISISQQNIFIFEYKTHHHVPQ--------- 891 ++ G ID Q +I +YK++H Sbjct: 1092 KLNALLQEYGYSAGLNFESLKGMLKGFIDLTFEHQGQFYIADYKSNHLGDDFTHYGPDSM 1151 Query: 892 EIEHIPYTHIAQLSIYEKILKD 913 + + Q IY L Sbjct: 1152 RGAIRSHRYDLQYIIYTLALHR 1173 >gi|120597399|ref|YP_961973.1| DNA-dependent helicase II [Shewanella sp. W3-18-1] gi|146294460|ref|YP_001184884.1| DNA-dependent helicase II [Shewanella putrefaciens CN-32] gi|120557492|gb|ABM23419.1| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1] gi|145566150|gb|ABP77085.1| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32] Length = 722 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 188/551 (34%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R + Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I ++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R + T+++ + A S + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I L Q + + ++ A + + + G + + L+E + E Sbjct: 463 DLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|317494833|ref|ZP_07953244.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917158|gb|EFV38506.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA] Length = 720 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 116/728 (15%), Positives = 221/728 (30%), Gaps = 144/728 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D ++L+ + + Sbjct: 90 FHGLAHRLL------RAHHLDANLPQDFQILDSDDQLRLLKRIVKALNLDEKQWPPRQGM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 D + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WYINNKKDDGLRPQHIESYGNPVEQTWLRVYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 I + +IL+DE QDT+ IQ+ I+ L + + VGD+ Sbjct: 204 P---QILNHYRERFTNILVDEFQDTNRIQYAWIQMLAGN----------TGKVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + R I L ++RST++IL + + + Sbjct: 251 QSIYGWRGAQVENIQRFLDDFP--------GAETIRLEQNYRSTSNILKAANALIENNDG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G LW + ++ S F+ L + Sbjct: 303 RLGKK---------------------LW-------TEDGDGEKISLYCAFNELDES---- 330 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 R + I D +L R + ++ + Sbjct: 331 ---RFVVNRIKAWQDNGGSL----------NDCAILYRSNAQSRVLEEAL----LQVAMP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462 + IKD +A R I ++ DD ++ ++ +P + + I R Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAYERVVNTPTRGIGDRTLDVIRQAARDR 433 Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + Q I+ I L H ++ RQ Sbjct: 434 QLTLWQATHELIQEKVFAGRASGALQRFIELIDALASDTADMPLHVQTDRVVRDSGLRQM 493 Query: 517 FISRFGN---EVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G I+ L+E + T + ++ L L + L + A + Sbjct: 494 YEQEKGEKGQTRIENLEELVTATRQYSYEDEDEDLLPLQAFLSHAALEAGEGQADAYQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA +L I K + + Sbjct: 591 -----------RLEEERRLAYVGVTRAMRKLTITYAETRRLYGKEVYHRPSRFIGELPEE 639 Query: 692 DERVKKIK 699 +++ Sbjct: 640 CVEEVRLR 647 >gi|227875827|ref|ZP_03993953.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243] gi|227843575|gb|EEJ53758.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243] Length = 900 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 111/730 (15%), Positives = 205/730 (28%), Gaps = 164/730 (22%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L +V + ++ +TL + Sbjct: 78 GAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERVETLVGNAAKYMWVST 137 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110 F + + +T+ F+ T+ + + + K Sbjct: 138 FHSSCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNA 197 Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ F A L + A Y++ ++ DF+DLI L ++ Sbjct: 198 KNELVEPATFAEMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPE-- 255 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRTLFAVGDE 222 I K + ++L+DE QDT+ Q++++R L D G L VGD Sbjct: 256 -ILAKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS 314 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY+F GA + + ++ + + L ++RST IL+V + + S Sbjct: 315 DQSIYAFRGATIRNIEEFEQDFP--------GATTVYLEQNYRSTGTILSVANAIISENS 366 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + LW ++ P+ + + + Sbjct: 367 GRHKKN---------------------LW------TEAGDGPKAIMFAA--------DTE 391 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A I I + T + V R + + + + Sbjct: 392 RDEAAFIIREIRDAHTAGTP----------WDEFAVFYRTNSQSRALEEML----TRENV 437 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 D IKD +A + DD + + +L P + KI Sbjct: 438 PYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLGDVAQTKIREAARL 497 Query: 463 TETVYEYIQK-----------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGA 510 + T + + + + ++ + L + + + L Sbjct: 498 SGTSFGQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDEAGAPLDEILGTALED 557 Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS 566 + + + I+ L E + S L + + + T + Sbjct: 558 SGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFLERISLVADTDQLPDQ 617 Query: 567 ANHN-------------------------------EVRIMTVHTAKGLESPVVFLVDTGS 595 + EV +MTVHTAKGLE VF+ Sbjct: 618 GSKEVAAKEMAPREPETNVSEASGDHPNPAPETKPEVTLMTVHTAKGLEFNTVFVTGMED 677 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F H EE RL YV + Sbjct: 678 GLFPHSRSLDDP----------------------------------EAIEEERRLAYVAV 703 Query: 656 TRASDQLIIC 665 TRA QL + Sbjct: 704 TRARRQLYLT 713 >gi|159185029|ref|NP_355024.2| DNA helicase II [Agrobacterium tumefaciens str. C58] gi|159140303|gb|AAK87809.2| DNA helicase II [Agrobacterium tumefaciens str. C58] Length = 824 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 104/548 (18%), Positives = 179/548 (32%), Gaps = 108/548 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L A Y+ K DF DL+++ + ++ I + Q+ +IL+DE QDT+ Sbjct: 220 RELYAAYQARLKTLNACDFGDLLLHPISIFRRH---TDILKEYHQKFRYILVDEYQDTNT 276 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + P+ + VGD+ QSIY + GAE +LR + Sbjct: 277 AQYMWLRLLAQR------AKDEPQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFP----- 325 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + E G + + + Sbjct: 326 ---GAKVIKLERNYRSTEHILGAAGHLIAHNEGRLGKTLFTERSSP-------------- 368 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + ++ + +DS + AR + I + + Sbjct: 369 ------------DDEKVVVHAAWDSEEE-------ARAVGEEIEQLQR----------KN 399 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + D+ +LVR L ++ + L I+D MA R + Sbjct: 400 YKLNDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVCQ 455 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + I + R + + Sbjct: 456 PADDLAFERIVNTPKRGLGDTTIRNLHDYARARDIPMLAAAADIIETDELKPKARKALFD 515 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 V++ + + IL + + E L+ E Sbjct: 516 VVQDFRRWQGLLENTEHTTLAEQILDESGYTAMWQADKTAEAPGRLENLKELIRSME--- 572 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 S + + LE + +A + V IMT+H+AKGLE VFL +F H+ Sbjct: 573 --SFESMRGFLEHVALVMDAEQNAELDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQR- 629 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + +S EE RL YVG+TRA Sbjct: 630 -------------------------------ALDEGGRSGLEEERRLAYVGITRAKKLCH 658 Query: 664 ICKHSNTS 671 I SN Sbjct: 659 IWFVSNRR 666 >gi|21323542|dbj|BAB98169.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] Length = 1073 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 142/1025 (13%), Positives = 285/1025 (27%), Gaps = 156/1025 (15%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + L + S + T + + + ++ Sbjct: 118 TVSTYDSYAGTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTE 177 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-A 130 + L +++T E ++ D KL + RD N L Sbjct: 178 YLLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 237 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 L +E V+ F + + L + Y + +++DE QDTS Sbjct: 238 LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHP---QVGYSQRRRFRVVMLDEYQDTSH 294 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q ++ SL G + AVGD Q+IY + GA + + Sbjct: 295 SQRVLLSSLFGGTDPGLTVN-------AVGDPMQAIYGWRGATAANLENFVDDFPVIHLD 347 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + EL S+R+ ++LT+ + V G + T T++ R G Sbjct: 348 GKTRAPKNELTTSWRNPPEVLTLANAV---SREVLGSPDAPTRTVQPLQPREGAP----- 399 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + ++ A T + Sbjct: 400 -----------TGEVSLGWFGTAAQEREFVADEMVKHWNARE-----EKGTFTA------ 437 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 VLVRK++ + + I V L D I DL++L ++ Sbjct: 438 ------AVLVRKKRHSAPMAEEL----TKRGIPVEIVGLSGLLDIPEIADLISLATMLVR 487 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYI------- 470 D+ + + +L P D+ ++ + + + E Sbjct: 488 PHDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSRERREKNPDPLAELDAIIEEAT 547 Query: 471 --------------------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 +F+ G+S+ + + + L + S D F I Sbjct: 548 AIEPEAVVGLADAVADLGEGDRFSEEGLSRLKRLATQLRYLRKYSLGRSVADIFADIETV 607 Query: 511 KKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----I 561 R + +SR LD+F + L EL+ E Sbjct: 608 FNIRTEVLSRQDPHADGAAGTVHLDKF---AEEVASHGGIGLPELLDYFELAKDQEEGLE 664 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDD 615 + + V+I+TVH AKGLE +V ++ + + K + + Sbjct: 665 PGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKASTWLKNVTMIPSSLRGDAG 724 Query: 616 PGIPIWIPQSKSRNNIVS----DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 G P + + +++ +EE +RL YVG+TR+ L++ + Sbjct: 725 TGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFYVGITRSERVLLVTGSALDE 784 Query: 672 NEKKSNQR----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 + K+ +W++ + + + Sbjct: 785 SGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAEGVFPQLLAADSSGADLVRG 844 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DTKGK 767 N E ++ + + S ++ P L + + + Sbjct: 845 PRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRELTATDLVSMKNNPEQFARR 904 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 N RG + H+ L+ R + + Sbjct: 905 MRRPVPFKPNTYAKRGTLFHQWLE--------DRFGSTALLDETELPGIDEDYSDDAFIE 956 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 L + + + + V + +I GR+D + + + ++KT Sbjct: 957 ----LRDAFLGSTWEN--RTPEFVEHPFEVTIGEHVIRGRMDAVFHTDGTWMVVDWKTGR 1010 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFA 945 I QL++Y + + YV+ F + A Sbjct: 1011 TPTGPEMDAA---IIQLAVYRLAWARLKGLEPEEVRAAFHYVAHDHTFEPNDLPTQEELA 1067 Query: 946 EISTK 950 + ++ Sbjct: 1068 RLLSQ 1072 >gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021] gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21] Length = 726 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 106/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +K+ + + G + LW Sbjct: 276 -KAETIRLEQNYRSTANILNSANKLIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++ + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|294085888|ref|YP_003552648.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322] gi|292665463|gb|ADE40564.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322] Length = 743 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 99/545 (18%), Positives = 160/545 (29%), Gaps = 121/545 (22%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ +DF DL+++ + + + I HI++DE QDT++ Sbjct: 180 QQLYKDYQARLLTLNAVDFGDLLLHMLTIFQHHPD---VLADYHGRITHIMVDEYQDTNV 236 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R LT L VGD+ QSIY + GAE +LR + Sbjct: 237 AQYLWLRLLTGQ----------RNNLCCVGDDDQSIYGWRGAEVGNILRFESDFP----- 281 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + L ++RST IL V + E G + Sbjct: 282 ---GAKTVRLEENYRSTGHILAAASTVIARNETRLGKT---------------------- 316 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 S D + W + AR I+ + +M Sbjct: 317 --LFTSADDGEKVRVNGYWDGADE-----------ARSISSHVESMQQNG---------- 353 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 I VLVR T + + I+D +A R I Sbjct: 354 AHLSQIAVLVRAGFQTREFEERFIA----IGLPYRVVGA-RFYERAEIRDAIAYLRLIAQ 408 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ P I I R + + ++ + Sbjct: 409 PADDLAFERIINVPKRGLGTASIQAIHIQARASQKPLLAAAIDLVETEELRPAARTALGR 468 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 ++ I + D ++L + + + L E ++ + Sbjct: 469 FVQDIGRWRNQIGSLHQGDLARMVLDESGYTTMWQMDKSPDAEGRLENLTELVSAMQDFD 528 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L LE + + EV +MT+H AKGLE VFL +F Sbjct: 529 S--------LQGFLEHISLVMDGDTVSEQGEVTLMTLHAAKGLEFDTVFLPGWEEGIFPS 580 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + EE RL YVG+TRA Sbjct: 581 QRT--------------------------------MDENGAIGLEEERRLAYVGITRARK 608 Query: 661 QLIIC 665 + I Sbjct: 609 NVHIS 613 >gi|284052478|ref|ZP_06382688.1| ATP-dependent nuclease subunit A [Arthrospira platensis str. Paraca] gi|291571372|dbj|BAI93644.1| putative helicase [Arthrospira platensis NIES-39] Length = 1070 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 161/979 (16%), Positives = 302/979 (30%), Gaps = 148/979 (15%) Query: 13 YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ--QASQTQC--------I 62 I P +N+ + S + Q + + Sbjct: 149 LSRILATFLDDPLMAERSLNQQIDWSELAQKLRDRALEDLINHPQWRELKDILTSNIGKP 208 Query: 63 EERFSLLSSFFLTQKFTPQKNI-----------------ITQEINKKSPDLKEKLKKSQD 105 E++ ++ ++ + + + + +K+ LK ++ Sbjct: 209 EDKLEVIRQATVSAMLSLENGDNVSENLQVFNKINIRYGSKKNWGENLQTVKDALKALRE 268 Query: 106 EFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK-------KNCVLDFEDLIINT 156 E +K I++ ++ ++ + L Y E K + VL F DL I Sbjct: 269 ELVKPCIKENLINAEVGEADHKLAEMLAALKEAYREVKDYLQQLKWQARVLTFADLEIGA 328 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 L+ I+ Q L+DE QDT+ IQ E++ LT+ L Sbjct: 329 LTALQNNPT---IQLYYQQRWRTFLVDEFQDTNPIQGEILELLTQ-----------TADL 374 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD+KQSIY F A+ + + ++ + I L SFR+ ++ +++ Sbjct: 375 TIVGDKKQSIYGFRRADIQVFNKFRKRI------IDNQGDEIILNQSFRTHQQLINQINQ 428 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 VFS + RI + + V ++ + Q Sbjct: 429 VFS--------PLLGDLRQDLEAVRIDSPSPRETLQIFVIPKTAETDVTQR--------- 471 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLT 393 + IA T+ M+ T + + R IQ DI +L R Sbjct: 472 -----RIAEGKLIAKTLKEMLDNQTPVFDKETQQLRPIQPGDIAILTRTWGPLDSYGEAL 526 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 +I + + L + KD +L +F+ DD++ V +L+SP F S+ + Sbjct: 527 AA----AQIPLAPSGGGNLLETQEAKDAWSLLKFLADPGDDIALVALLRSPFFTISDRLL 582 Query: 454 FK----ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509 FK + T + + + +F I + L+ P I Sbjct: 583 FKVSSNLKLSHQSTSENMSWWKFLNSGSPVEFTKAIDPLKRLLKKRHIEPPSRLL-QIAD 641 Query: 510 AKKGRQQFISRFGNEVIDVLD-----EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564 G I+ + D E + L + + + L+ T++R Sbjct: 642 RLTGYTATIANLPASNRRLADFNGFRELV-QILEQGTDDLFGVVRRLKRLKDKAVTVERP 700 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 N V +MT+ AKGLE P+V + D + Q Sbjct: 701 PINTSNAVSLMTIFAAKGLEWPMVVVADLSR---PTPNSSVPVYFDPEYGVAIACKDEDQ 757 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 + I + L ++ + E R+LYV +TR+ D +++ N Sbjct: 758 DRKDPVIYNWLKYRHQQREEAEALRILYVALTRSRDYILLTASQEKGN-----------Y 806 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + + + T IN D+ I + I + + + LF Sbjct: 807 LNKLYLGLQAANIPITTLEINSDDIIPPVPPSPL--------PPAINPPLLTEAMTSGLF 858 Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKN 803 ++E P+ + NQ G ++HK L+ R Sbjct: 859 ELPVTSLSEYKR-CPTRFKFIYILGHPGFSEEANQGMRIGQLVHKALEY------DIRD- 910 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863 I + + E++ ++ + Sbjct: 911 -IDKLQKFAEYGTDEQLLSEAICLAIDFDNTEEFK-IFRDH---EINREIELKLDILGVS 965 Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923 +G D I + ++ +YK+ + P H QL Y K L Y Sbjct: 966 FNGIADLI----GDNWVLDYKSDRVM------RPEHHNLQLWAYAKALN--YS----EAH 1009 Query: 924 LIYVSEPKVFIIPQNKLNK 942 + Y+ +++ +P L K Sbjct: 1010 IAYLRHKQLYTLPPKLLEK 1028 >gi|123440590|ref|YP_001004584.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087551|emb|CAL10332.1| DNA helicase II [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 720 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 119/700 (17%), Positives = 223/700 (31%), Gaps = 144/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D ++L+ + + Sbjct: 90 FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 I + +IL+DE QDT+ IQ+ IR L D + VGD+ Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----------RSNVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + R + I L ++RST++ILT + + + + Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANTLIANNDG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + LW + S F+ L + Sbjct: 303 RMGKN---------------------LW-------TDGAQGEPISLYCAFNELDE----- 329 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 AR + I D +L R + ++ + Sbjct: 330 --ARFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 + IKD +A R I ++ DD +F ++ +P + + I R Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVIRQTARDR 433 Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + A S Q ++ + L H H ++ Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQTDRVIRDSGLWSM 493 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G + ++ L+E +N T + Q+ L L + L + A + Sbjct: 494 YEQEKGEKGQARVENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTIHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L +C + Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619 >gi|314966448|gb|EFT10547.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2] gi|315092775|gb|EFT64751.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1] gi|327327270|gb|EGE69046.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL103PA1] Length = 1071 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 149/997 (14%), Positives = 293/997 (29%), Gaps = 139/997 (13%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSS 71 + L + +NK + G I + L A + + Sbjct: 135 AARAYQLAAEVIMGLNKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQ 194 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 L + T+ + D+ + L + + + Sbjct: 195 MLL--------DAPTKRGGDRYADIDKWLSRVDEREELL--------------------- 225 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ KK+ +++F D ++ L+ + ++ +L+DE QDTS Sbjct: 226 DLVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSA 282 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q +V+ +L F + H + AVGD Q+IY + GA +L R + Sbjct: 283 QADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---E 336 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 G ++ L + R I+ + ++ +R S + Sbjct: 337 GTPAQVLSLATNRRCADQIINAAN--------------VASEELRQTLSSAAESDDHDPA 382 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q E ++ + A + TI Sbjct: 383 GDRAEVAVGQPLIAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------A 434 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + D +LVR+ D + + V + L I ++A R ++ + Sbjct: 435 RWSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRLLVDR 490 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC----------------TQRHETETVYEYIQKFAN 475 +DD + +L +P S DD+ + + + + + Sbjct: 491 QDDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDPDDVDIHLSDAVMEGRP 550 Query: 476 CGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 G + Q +K + I Q SP D I + + D L Sbjct: 551 GGHERLQCAVKRVCAEIVEVDAHQGDSPDDLVLRIEAITGLIDDIAADDPHRSAARRDHL 610 Query: 530 DEFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLES 585 D N ++ ++ +++ L + RA + + + V + TVH AKGLE Sbjct: 611 DALWNAIREVRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEW 670 Query: 586 PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 P+V + D VF ++PS I P S S + + + + Sbjct: 671 PLVIIPDMAQGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKE 730 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERV 695 S E RL YV +TRA ++L++ H K S Y DM+ + + Sbjct: 731 DSQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGER 789 Query: 696 K--------KIKLTNSINKDEWIAYEWSTHHPENTPLERE------ETIKQLMDEQKIPK 741 + + S P R +K + Sbjct: 790 PDNVIQAGTPWPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQD 849 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800 ++ P + ++ L+ + + ++ G H+ + Q + Sbjct: 850 EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 909 Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINC 857 + + +R L + + A ++ ++V Sbjct: 910 LFDAEEVAELDEENTTQEAVAAEPSGAESRALRS--LCQAFEESRWAGATVLAVEKSFVM 967 Query: 858 PKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 ++ GR+D + + + ++KT + QLSIY + Sbjct: 968 TIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQA 1019 Query: 915 YPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 + + +V + A I T Sbjct: 1020 RGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILT 1056 >gi|104784398|ref|YP_610896.1| DNA-dependent helicase II [Pseudomonas entomophila L48] gi|95113385|emb|CAK18113.1| DNA-dependent ATPase I and helicase II [Pseudomonas entomophila L48] Length = 727 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 106/572 (18%), Positives = 194/572 (33%), Gaps = 116/572 (20%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + S LT + + + YE+A ++ V+DF +L++ DL + + + Sbjct: 155 EGLRPRHIQASGDLFLTTMRDIYSAYEQACERAGVIDFSELLLRALDLWRDQPG---LLE 211 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 + HIL+DE QDT+ +Q+ +R L +L AVGD+ QSIY + G Sbjct: 212 HYQRRFRHILVDEFQDTNAVQYAWLRLLAG----------GGDSLMAVGDDDQSIYGWRG 261 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A+ + + + +I L ++RST IL + + + G Sbjct: 262 AKIENIHQYTADFP--------DAELIRLEQNYRSTGGILKAANALIANNSGRLGK---- 309 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 +LW + + + F+ + AR + Sbjct: 310 -----------------ELW-------TDLGEGEPLTLYAAFNEHDE-------ARYVVE 338 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 TI ++I DI +L R + ++ +I Sbjct: 339 TIESLIKQGNA----------RSDIAILYRSNAQSRVLEEAL----LRERIPYRIYGGQR 384 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470 + IK+ MA R + + +D + ++ P E + I RH ++++ + Sbjct: 385 FFERAEIKNAMAYLRLLEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQSSMWDAM 444 Query: 471 QKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521 + K I+ + L H ++ Q+ Sbjct: 445 CQLLAAKALKGRAASALGAFIELLDNLAAKVLDMPLHLMTQTVIEQSGLIIYHQEEKGEK 504 Query: 522 GNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 G ++ L+E ++ E + + L L + L + + +++MT+H+ Sbjct: 505 GQARVENLEELVSAARNFETSDEDADLTPLSAFLGHASLEAGDSQADEHEDSIQLMTLHS 564 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P VFLV +F HK + Sbjct: 565 AKGLEFPYVFLVGMEEGLFPHKMSLEEPG------------------------------- 593 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA QL++ Sbjct: 594 ---RLEEERRLAYVGITRAMRQLVMTYAETRR 622 >gi|309703175|emb|CBJ02509.1| exodeoxyribonuclease V beta subunit [Escherichia coli ETEC H10407] Length = 1180 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDATGVASVIEEPTLTSHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ + + E+ Sbjct: 967 PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|288802440|ref|ZP_06407879.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18] gi|288334968|gb|EFC73404.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18] Length = 851 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 113/693 (16%), Positives = 200/693 (28%), Gaps = 128/693 (18%) Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171 + + + YE ++ +DF+D+++ T L + IR Sbjct: 164 AEDRAAIERDRSTRMPAI-HMIYKAYEARCRQANAMDFDDILLYTFLLFRDN---KEIRE 219 Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231 K Q+ +IL+DE QDT+ Q +I L E + R + VGD+ QSIYSF G Sbjct: 220 KYGQQFEYILVDEYQDTNYAQVSIISQLAE----------THRRICVVGDDYQSIYSFRG 269 Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291 A +L K + + +L ++RST I+ + + E Sbjct: 270 ANIDNILDFKNKFE--------DAKLFKLERNYRSTQLIVQAANSLMKHNE--------- 312 Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351 I G L++ S + A +A Sbjct: 313 -RQIPKDVFSKEAEGDKILYKPCYSDRE-------------------------EAMVVAN 346 Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411 + + D + +L R + R I Sbjct: 347 ELKRIKRND---------DCDYGNFAILYRTNAQSRSFEDEFR----KQGIPYKIIGGLS 393 Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-- 468 IKD++A R + + +D+ +F ++ P I K I + + +++E Sbjct: 394 FYQRKEIKDIIAYFRLVSNPDDEEAFRRIINYPTRGIGNTTIQKIIDCAQRNSVSLWETI 453 Query: 469 -----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 Y ++K I I ++ I+ S Sbjct: 454 LNPIQYGLDVNKGTMTKLFAFRTLISGFIKNVALKDAYELGKEIIEESGVSADIRSGSEP 513 Query: 524 E---VIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANH-NEVRIM 575 E + L+EF++ + +E L L++ + +V +M Sbjct: 514 EDLARRENLEEFMSAMQGFVDSGREEGREENVYLTDYLQEVALYTDADKEDDDTPKVTLM 573 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE P VF+V +F Sbjct: 574 TIHAAKGLEFPTVFVVGLEENIFPSPMS-------------------------------- 601 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT--------SNEKKSNQRTWYDMVYD 687 K EE RLLYV +TRA I+ N N + +++ Sbjct: 602 --ASSKREIEEERRLLYVAITRAERHCILTNAKNRFRYGTMQIDNPSRFLNDFDPALIHV 659 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 + + ++D W + + E E + Sbjct: 660 EDEANSAFGGERRKMPWDEDNSARSPWGHNGSGDNFREYEPNKAYTGSRPWGQEYRQMGS 719 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780 + + P T + + F Sbjct: 720 RWQNSNPVASQFRADPKPKITERKRPEAAVDPF 752 >gi|170684073|ref|YP_001744988.1| exonuclease V subunit beta [Escherichia coli SMS-3-5] gi|170521791|gb|ACB19969.1| exodeoxyribonuclease V, beta subunit [Escherichia coli SMS-3-5] Length = 1170 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 132/973 (13%), Positives = 292/973 (30%), Gaps = 151/973 (15%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC----IEERFS 67 + + + + I + K + ++ + + E Sbjct: 218 RIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 277 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 S FL + T+ + + + D+ + L Sbjct: 278 KFSQCFLEDR--------TKAGGE----------TPRHPLFEAIDQLLAEPLSIRDLVIT 319 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + K++ L F+D++ + L+ + + I +IDE QD Sbjct: 320 RALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQD 378 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T Q+ + R + H L +GD KQ+IY+F GA+ ++ + Sbjct: 379 TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 430 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 T L ++RS ++ V+K+FS ++A E ++ Sbjct: 431 YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA---- 476 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362 + + P + W +S S +A+ A I + + + Sbjct: 477 ------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 530 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + R ++A DI VLVR R++ + L+ SV ++R + + L ++++ Sbjct: 531 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEML 587 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L + +++ E + + L + + + DI + E+ ++ Sbjct: 588 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYR 639 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539 + + + + S + +L G ++ + E L L + Sbjct: 640 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 693 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L + I E + + + ++ + V+I+T+H +KGLE P+V+L + Sbjct: 694 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 753 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ N + + + E RLLYV +TR+ Sbjct: 754 DQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 800 Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 L + +KK + + E L I W T Sbjct: 801 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 860 Query: 718 ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761 + E + + + D+ ++ + Sbjct: 861 QTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 920 Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + + + + + + G +H L + + N++ + + Sbjct: 921 VVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWE 977 Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859 L IT +L+ P+ + D E+ I+ P Sbjct: 978 PVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLS 1037 Query: 860 ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900 ++ G ID + + ++ +YK++ + + Sbjct: 1038 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1097 Query: 901 IAQLSIYEKILKD 913 Q +Y L Sbjct: 1098 DLQYQLYTLALHR 1110 >gi|304321353|ref|YP_003854996.1| DNA helicase II [Parvularcula bermudensis HTCC2503] gi|303300255|gb|ADM09854.1| DNA helicase II [Parvularcula bermudensis HTCC2503] Length = 775 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 112/642 (17%), Positives = 201/642 (31%), Gaps = 120/642 (18%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A L Y+E + DF DL+++ + ++ I + +I++DE QDT+ Sbjct: 189 AIDLYTAYQERLRTFNAADFGDLLVHNLTIFRQE---TDILNAFRRRFRYIMVDEYQDTN 245 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 + Q+ +R L D + VGD+ QSIY + GAE + +LR ++ Q Sbjct: 246 IAQYLWLRLLGTDDEGRSGG-----NICVVGDDDQSIYGWRGAEVENILRFEKDFQ---- 296 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I L ++RST IL+ + S ++ G + + V Sbjct: 297 ----GAKVIRLEQNYRSTGAILSAATHIISHNKDRLGKTLWTD---------ADHGAAVT 343 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 L + W + + AR I I + + Sbjct: 344 L---------------RGVWDAPEE-----------ARVICDEIEA----------AQVK 367 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 DI +LVR N + + +D +A R + Sbjct: 368 GRSLSDIAILVRASFQMRAFEERL----NTAGLPYKVVGGPRFYEREETRDALAYLRLVR 423 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYIQKFANCGISKFQ 482 + +DDLSF ++ P F + + ++ + + S + Sbjct: 424 NPDDDLSFSRIINKPRRGFGDKTLTQLSQVARQMGASLSAAGAALLETNELKGKSRSALK 483 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539 + I A +P +L + + + + L E + Sbjct: 484 EFLDNIARWRSAAADLAPGRLVETVLEESGYIAFWKASKTAQAQGKLENLKELVQAAEEF 543 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L+ +R+ +V +MT+H AKGLE PVVFL +F Sbjct: 544 ETLEG--------YLDHVSLVAERSGDTGEGQVWLMTLHAAKGLEFPVVFLPGWEEDIFP 595 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 I + EE RL YVG+TRA Sbjct: 596 SGR--------------------------------AINDNGQVGLEEERRLAYVGVTRAR 623 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 ++ I +N + W + F ++ K+I++ + A E + Sbjct: 624 ERCHISFAAN-----RQVYGRWQSSLPSRFIDELPEKEIEVLSEPGLYGVKAAELPAYSR 678 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761 E + Q+ + + + L S+ Sbjct: 679 FADIAADPERSYRTPGWQRAQRARGASTAPALEGAARLVASS 720 >gi|126741390|ref|ZP_01757064.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6] gi|126717526|gb|EBA14254.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6] Length = 794 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 115/712 (16%), Positives = 214/712 (30%), Gaps = 128/712 (17%) Query: 47 LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106 +K + + + + L ++ + I + + L + ++ Sbjct: 117 VKLLRRHAELAGLKSNFTILDTDDQIRLLKQLIKAEGIDDKRWPARM--LANIIDDWKNR 174 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + DR L A Y+ K+ +DF DL+++ + ++ Sbjct: 175 ALT-PDRLPAADAGAYNHR----GTALYAQYQTRLKELNAVDFGDLLLHMVTIFQEH--- 226 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I + + I++DE QDT++ Q+ +R L R + VGD+ QSI Sbjct: 227 SDILLQYQRWFRFIMVDEYQDTNIAQYLWLRLLAG----------GHRNICCVGDDDQSI 276 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GAE +LR ++ ++ L ++RST IL V G Sbjct: 277 YGWRGAEVGNILRFEKDFP--------GAKVVRLEQNYRSTEHILAAASNVIRGNAGRLG 328 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 +LW + ++ ++D + A Sbjct: 329 K---------------------ELW-------TAAKGGEKVRLIGHWDGEEE-------A 353 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 R I I +M +R + ++ +LVR + Sbjct: 354 RWIGEEIESMQRG-----TRGQRPVDLNEMAILVRASHQMRAFEDRF----LTIGLPYRV 404 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 + L I+D MA R ++S EDDL+F ++ +P + KI R + Sbjct: 405 IGGPRFYERLEIRDAMAYFRLVVSPEDDLAFERIVNTPKRGLGDKAQQKIQLMARSNGIS 464 Query: 466 VYEYIQ------KFANCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQF 517 + E + + G + + ++ I + S + +IL + Sbjct: 465 LLEGARLAVESGEIKGKGGTALRQFVEDIARWGRMTGDADISHMELAEIILDESGYTTMW 524 Query: 518 ISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574 + ++ L E + E L LE + +V I Sbjct: 525 QLDKNPDSPGRLENLKELVKALENFEN--------LQGFLEHVSLVMDNDKQDAEQKVSI 576 Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634 MT+H AKGLE P VFL +F + Sbjct: 577 MTLHAAKGLEFPAVFLPGWEDGLFPSQRS------------------------------- 605 Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694 + EE RL YVG+TRA + I + ++ + + Sbjct: 606 -MDESGLKGLEEERRLAYVGITRAEEICTIS----FAGNRRVFGQWQSQLPSRFVDELPE 660 Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 LT ++ ++ + SP Sbjct: 661 AHVEVLTPPGLYGGGYGAAAPGGLSASSGFSEAPVKSRIEERMAQADGYNSP 712 >gi|238793575|ref|ZP_04637199.1| DNA helicase II [Yersinia intermedia ATCC 29909] gi|238727165|gb|EEQ18695.1| DNA helicase II [Yersinia intermedia ATCC 29909] Length = 720 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 118/700 (16%), Positives = 222/700 (31%), Gaps = 144/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D ++L+ + + Sbjct: 90 FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDDKQWPPRQAM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 I + +IL+DE QDT+ IQ+ IR L D + VGD+ Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----------RSNVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + R + I L ++RST++ILT + + + + Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANTLIANNDG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + LW + S F+ L + Sbjct: 303 RMGKN---------------------LW-------TDGAEGEPISLYCAFNELDE----- 329 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 AR + I D +L R + ++ + Sbjct: 330 --ARFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 + IKD +A R I + DD +F ++ +P + + + R Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNCNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433 Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + A S Q ++ + L H H ++ Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQSDRVIRDSGLWSM 493 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G + ++ L+E +N T + Q+ L L + L + A + Sbjct: 494 YEQEKGEKGQARVENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L +C + Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619 >gi|148263393|ref|YP_001230099.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] gi|146396893|gb|ABQ25526.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] Length = 678 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 89/598 (14%), Positives = 193/598 (32%), Gaps = 120/598 (20%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 +A + Y+ A K +DF+D+I+ T DLL+ + + ++++DE QDT Sbjct: 168 MAAEVYPRYQSALKAFNAIDFDDIIMLTADLLQNHPE---VLQHWQERFRYVMVDEYQDT 224 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ ++ L + L VGD+ QSIY + GA+ +L ++ Sbjct: 225 NASQYLLVNLLAGGY----------GNLCVVGDDDQSIYGWRGADVGNILDFEKDF---- 270 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 ++ +++L ++RST +IL + V + + G + Sbjct: 271 ----KECRVVKLEQNYRSTGNILEAANHVIGHNAKRKEKRLWTA---------SGSGRPL 317 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 L + ++ + + K Sbjct: 318 DLIVMQDDEEEATTVVE-----------------------------------RMQMERFK 342 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + D +L R + RF I V + +KD ++ + I Sbjct: 343 HNLAYSDFAILYRTNAQSRPFEEQLRFE----DIPYVLIGGMQFYERKEVKDAISYLKVI 398 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKF 481 + D+++ + ++ P + + KI + + E + ++ Sbjct: 399 GNSNDEIALLRIVNFPRRGIGDSTVVKINQWSMEQGCPLLEAFGRVNEIEGIVEATRNRV 458 Query: 482 QHVIKYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNF 535 Q + + + + + + + + + + +++ +N Sbjct: 459 QDFYRLLQGAVEEFSGEGDLAEKGRRLFKQLGLEDELYRTIDDPALARRKVENVEQIINS 518 Query: 536 TLRNEQNSY-SSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLV 591 E+ +L + ++ + V +M++H++KGLE P VFLV Sbjct: 519 MAAYEERIPKPTLSGFLEKVSLMDEDRFSGKDKKEHGRDAVTLMSLHSSKGLEFPYVFLV 578 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 ++ HK + T +E RL Sbjct: 579 GMEEEILPHK----------------------------------RSIYEDFTVDEERRLC 604 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 YVG+TRA LI+ + K +R + + + +K + ++E Sbjct: 605 YVGITRARKHLIMTRCLQRKKYGKLQERVPSRFLEEIPGHLLNEQKGAAAKVLTEEEA 662 >gi|229551867|ref|ZP_04440592.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1] gi|258539285|ref|YP_003173784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705] gi|229314811|gb|EEN80784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1] gi|257150961|emb|CAR89933.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705] Length = 750 Score = 276 bits (705), Expect = 2e-71, Method: Composition-based stats. Identities = 138/795 (17%), Positives = 243/795 (30%), Gaps = 161/795 (20%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + K + P + K +A E+ + Sbjct: 66 AAREMRERVGKLV--DPEIARDIWVSTFHALCVRILRRDIDKL-GYNRAFTIADPAEQLT 122 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L+ P K + I K +L Q TY ++ Sbjct: 123 LVKHILADFNLDP-KRYDPKSILGAISGAKNELIDPQ-----------TYSDEQANSPFT 170 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + A Y++ + + LDF+DLI+ T L +K + ++ +I +DE QD Sbjct: 171 KTVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET---LGFYQRKFRYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++ L E + L VGD QSIY + GA + +L K+ K Sbjct: 228 TNEAQYRLVHMLAEGY----------HNLCVVGDADQSIYGWRGANMQNILDFKKDYPK- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST IL+ + V N Q + Sbjct: 277 -------AQVILLEQNYRSTKTILSAANDVIKNNLNRQAKT------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ + + + S + A + I + Sbjct: 311 --LW------TENATGDKITYYRA--------QSETDEAIFVIRRIEAEMAEHHR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D I+D +A R Sbjct: 350 ----KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYDRKEIRDALAYFRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKF 481 +++ +DD+SF ++ P + K+ ++ E + Sbjct: 402 VVNPDDDMSFNRIVNEPKRGIGNTSVAKLEAFANQHDWSLLEAAANAELSPISGKARGNL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 K I L + + + IL + E + L+E L+ T Sbjct: 462 AQFGKMIQRLGQRRKDLNVTEMMQAILDDSGYLGTLRAANTLEAETRVENLEELLSVTQG 521 Query: 539 N------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 E + ++EL + EV +MT+H AKGLE PVVFLV Sbjct: 522 FDARYQPENEDSDIFVDFLAELALLSDQD--EVEEDAQEVTLMTLHAAKGLEFPVVFLVG 579 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F + + EE RL Y Sbjct: 580 MEEGLFPLS----------------------------------RAAMDEGELEEERRLAY 605 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 VG+TRA +L + + M+Y N+ + I+ + D A Sbjct: 606 VGITRAKQKLYLT-------------NAYARMLYGQRQNNPASRFIEEIDPELLDISGAA 652 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + P +R + +S P + P+ GKT+ E+ Sbjct: 653 QPKSDIPFINRTDRAFSSP------------YSRHPETTGTPVTVKPAPTTGAGKTSWEA 700 Query: 773 LLS-DNQTFNRGLII 786 +++ + G ++ Sbjct: 701 GDKVEHRKWGIGTVV 715 >gi|149204193|ref|ZP_01881161.1| UvrD/REP helicase [Roseovarius sp. TM1035] gi|149142635|gb|EDM30680.1| UvrD/REP helicase [Roseovarius sp. TM1035] Length = 779 Score = 276 bits (705), Expect = 2e-71, Method: Composition-based stats. Identities = 110/645 (17%), Positives = 198/645 (30%), Gaps = 117/645 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+ K+ +DF DL+++ + ++ D + + + +IL+DE QDT++ Sbjct: 195 ALYHQYQARLKELNAVDFGDLLLHVVTIFQRHDD---VLRQYQRWFRYILVDEYQDTNVA 251 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 252 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++I L ++RST IL V + + G +LW Sbjct: 296 --GAAVIRLEQNYRSTPHILAAASGVIAGNRDRLGK---------------------ELW 332 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++D + AR I I M R Sbjct: 333 -------TEAEEGEKLRLIGHWDGEEE-------ARWIGEEIDAMQRG-----TRGMRPY 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +LVR + + L I+D MA R ++S Sbjct: 374 SLDAMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLVVSP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DDL+F ++ +P + KI T R + E + + + + + Sbjct: 430 SDDLAFERIVNTPKRGLGDKAQQKIQMTARQHGVPLVEGARLLLDDKGITGKAAGELRLL 489 Query: 485 IKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I + + S + +IL + + E ++ L E + Sbjct: 490 IDGLGRWGRMVGDADISHVELAEMILDESGYTGMWQNDKTPEAPGRLENLKELVKALEGF 549 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + +V +MT+H AKGLE P VFL +F Sbjct: 550 EN--------LQGFLEHVSLIMDNEAGEEGEKVTLMTLHAAKGLEFPAVFLPGWEDGLFP 601 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 602 SQRSMDESGVRG--------------------------------LEEERRLAYVGITRAE 629 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + I N + + + + V + + Sbjct: 630 EVCTISFAGNRRVYGQWQSQMPSRFIDELPEGHVDVLTPPGLYGGGYGAAASSGIESRAA 689 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 E + + P S ++ + + ++ T+ Sbjct: 690 EANVYNSPGWRRLQARGAERPLSQPSEARHSVIDLQAMSAHTVGE 734 >gi|145294939|ref|YP_001137760.1| hypothetical protein cgR_0885 [Corynebacterium glutamicum R] gi|140844859|dbj|BAF53858.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1070 Score = 276 bits (705), Expect = 2e-71, Method: Composition-based stats. Identities = 142/1025 (13%), Positives = 287/1025 (28%), Gaps = 156/1025 (15%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + L + S + T + + + ++ Sbjct: 115 TVSTYDSYAGTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTE 174 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-A 130 + L +++T E ++ D KL + RD N L Sbjct: 175 YLLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 234 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 L +E V+ F + + L + Y + +++DE QDTS Sbjct: 235 LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHP---QVGYSQRRRFRVVMLDEYQDTSH 291 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q ++ SL G + AVGD Q+IY + GA + + Sbjct: 292 SQRVLLSSLFGGTDPGLTVN-------AVGDPMQAIYGWRGATAANLENFVDDFPVIHLD 344 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + EL S+R+ ++LT+ + V G + T T++ R G Sbjct: 345 GKTRAPKNELTTSWRNPPEVLTLANAV---SREVLGSPDAPTRTVQPLQPREGAP----- 396 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + ++ A T + Sbjct: 397 -----------TGEVSLGWFGTAAQEREFVADEMVKHWNARE-----EKGTFTA------ 434 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 VLVRK++ + + I V L D I DL++L ++ Sbjct: 435 ------AVLVRKKRHSAPMAEEL----TKRGIPVEIVGLSGLLDIPEIADLISLATMLVR 484 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYI------- 470 +D+ + + +L P D+ ++ + ++ + E Sbjct: 485 PQDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSRERREKNSDPLAELDAIIEEAT 544 Query: 471 --------------------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 +F+ G+S+ + + + L + S D F I Sbjct: 545 AVEPEAVVGLADAVADLGEGDRFSEEGLSRLKRLATQLRYLRKYSLGRSVADIFADIETV 604 Query: 511 KKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----I 561 R + +SR LD+F + L EL+ E Sbjct: 605 FNIRTEVLSRQDPHADGAAGTVHLDKF---AEEVASHGGIGLPELLDYFELAKDQEEGLE 661 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDD 615 + + V+I+TVH AKGLE +V ++ + + K + + Sbjct: 662 PGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKASTWLKNVTMIPSSLRGDAG 721 Query: 616 PGIPIWIPQSKSRNNIVS----DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 G P + + +++ +EE +RL YVG+TR+ L++ + Sbjct: 722 TGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFYVGITRSERVLLVTGSALDE 781 Query: 672 NEKKSNQR----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 + K+ +W++ + + + Sbjct: 782 SGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAEGVFPQLLATDSSGADLVRG 841 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DTKGK 767 N E ++ + + S ++ P L + + + Sbjct: 842 PRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRELTATDLVSMKNNPEQFARR 901 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 N RG + H+ L+ R + + Sbjct: 902 MRRPVPFKPNTYAKRGTLFHQWLE--------DRFGSTALLDETELPGIDEDYSDDAFIE 953 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 L + + + + V + +I GR+D + + + ++KT Sbjct: 954 ----LRDAFLGSTWEN--RTPEFVEHPFEVTIGEHVIRGRMDAVFHTDGTWMVVDWKTGR 1007 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFA 945 I QL++Y + + YV+ F + A Sbjct: 1008 TPTGPEMDAA---IIQLAVYRLAWARLKGLEPEEVRAAFHYVAHDHTFEPNDLPTQEELA 1064 Query: 946 EISTK 950 + ++ Sbjct: 1065 RLLSQ 1069 >gi|241896132|ref|ZP_04783428.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC 33313] gi|241870646|gb|EER74397.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC 33313] Length = 759 Score = 276 bits (705), Expect = 2e-71, Method: Composition-based stats. Identities = 121/695 (17%), Positives = 215/695 (30%), Gaps = 139/695 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQTQCIEE 64 G ++ L ++ + V + ++ L +++ Sbjct: 28 GAGSGKTRVLTHRVAHLIQDLDVLPWRILAITFTNKAAREMKERISQLVEESDAEAVWVS 87 Query: 65 RFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF- 120 F L+ L + +K+ + + + +K LK + K R + Sbjct: 88 TFHALAVRILRRDIDKLGYKKDFSIIDASAQRTLIKRILKDFNVDIEKYAPRSVLGAISN 147 Query: 121 -------------KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 K+T + Y+ LDF+DLI+ T +LL K Sbjct: 148 AKNAMEGPEEYVKKATGPFEEIVGKAYKEYQHRLALAQSLDFDDLIMLTIELLHKD---Q 204 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + ++ ++ +DE QDT+ Q+E++ L+ R L VGD QSIY Sbjct: 205 EVLSYYQEKFLYVHVDEYQDTNDAQYELVTLLSA----------KHRNLAVVGDSDQSIY 254 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA + +L + + L ++RST IL + V Sbjct: 255 GWRGANMQIILNFSKEYP--------DAKTVMLEQNYRSTQTILDAANAVIRNNNERIAK 306 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 LW D+ + + D A Sbjct: 307 K---------------------LW------TDNGEGEKITYYRGQSDRSE--------AL 331 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 + I + + T KD VL R + + + Sbjct: 332 FVIKEIRDAVDTQQH---------DYKDFAVLYRTNAQSRGVEEAL----VKANMPYTVV 378 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466 D I+D++A + + D+ +F+ ++ P + + K+ T+ Sbjct: 379 GGSKFYDRKEIRDVLAYLSLVTNPADNENFLRIVNEPKRGIGQTSLEKLRRFALENNWTL 438 Query: 467 YEYIQK------FANCGISKFQHVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFIS 519 + + +K K I + I ++ S D IL Q Sbjct: 439 LDSAANATLIPGLSARAANKLTDFAKMISDFIKQMSFDLSLTDLTKSILEKSGYEAQLKK 498 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSSLQ------ELISELEQYPPTIKRAHSANHN 570 E ++ L EFL+ T ++N S + + + EL ++N N Sbjct: 499 SPTPENEGRLENLSEFLSVTEEFDKNYEPSDESISKYVDFLGELALVSDLDNVDENSN-N 557 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 ++ +MT+H AKGLE PVVFLV +F Sbjct: 558 QITLMTLHAAKGLEFPVVFLVGMEENIFPLS----------------------------- 588 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA ++L + Sbjct: 589 -----RAAADDDQLEEERRLAYVGITRAKEKLFLT 618 >gi|111220613|ref|YP_711407.1| ATP-dependent DNA helicase [Frankia alni ACN14a] gi|111148145|emb|CAJ59814.1| ATP-dependent DNA helicase [Frankia alni ACN14a] Length = 847 Score = 276 bits (705), Expect = 2e-71, Method: Composition-based stats. Identities = 104/722 (14%), Positives = 203/722 (28%), Gaps = 134/722 (18%) Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 + L ++ ++E I + + + A Y++ + LDF Sbjct: 183 RHPARGLAAQISNLKNELIDWEAARDRASSHQE-----RTLAEVYAAYQQRLAQANALDF 237 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 +DLI+ T +LL+ + + H+L+DE QDT+ Q+ ++R L Sbjct: 238 DDLIMMTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGQPAHADAD 294 Query: 210 HS----------------------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 P L VGD QSIY+F GA + ++ + Sbjct: 295 ADVPGPGAAADAAVSTVTWASGAVPPAELCVVGDADQSIYAFRGANIRNIVEFEEDFP-- 352 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++I L ++RST IL+ + V + + S Sbjct: 353 ------DAAVILLEQNYRSTQTILSAANAVIARNNQRKAKRLWS---------------- 390 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + ++ + + A +A + + Sbjct: 391 ------------DAGDGEKIVGFVADNEHDE-------AAFVAEEVDRLTDAG------- 424 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + + D+ V R + + + + + I+DL+A R Sbjct: 425 --LARPADVAVFYRTNAQSRVFEEIF----VRVGLPYRVVGGVRFYERREIRDLLAYLRV 478 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISK 480 + + D ++ +L P + + + + A Sbjct: 479 LANPNDTVNLRRILNVPRRGIGDRAEAALAGFAEVERIGFAAALERVGEVPGIATRSAKA 538 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537 + + EL + P +L + ++ E + L E + Sbjct: 539 VREFAALLAELRA-IEADGPVAVVEAVLERTGYLSELLAEDTVEAQGRVENLQELVGVVQ 597 Query: 538 RN-EQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGS 595 E+N +L E + ++ + + V +MT+H+AKGLE PVVFL Sbjct: 598 EFTERNPQGTLAEFLEQVSLVADADQVPTDDGSDGVVTLMTLHSAKGLEFPVVFLTGLED 657 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 VF H EE RL YVG+ Sbjct: 658 GVFPHLRTLGDPT----------------------------------QLEEERRLAYVGV 683 Query: 656 TRASDQLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 TRA +L + ++ + + + + + ++ W Sbjct: 684 TRARSRLYLTRSVVRSAWGQPAYNPPSRFLGEVPDALVDWRRLVEAAPEPAARPWGGSGG 743 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 S + + Q + PS + + Sbjct: 744 SGPGGFGSGGFGSGSAGQGAGRAGGGSAPARKPLPNSPFAGRGRPSARPVLELRQGDRVT 803 Query: 775 SD 776 D Sbjct: 804 HD 805 >gi|119964140|ref|YP_948452.1| UvrD/REP helicase [Arthrobacter aurescens TC1] gi|119950999|gb|ABM09910.1| UvrD/REP helicase [Arthrobacter aurescens TC1] Length = 1167 Score = 276 bits (705), Expect = 2e-71, Method: Composition-based stats. Identities = 144/1050 (13%), Positives = 259/1050 (24%), Gaps = 177/1050 (16%) Query: 39 METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI--NKKSPDL 96 + G + Q + E + F K T +I + D Sbjct: 153 LRLGIERDVVLLGGAQSWQLASEVVEAYDGEYQHFTAAKSTLVTAVIQLAGECAEHLQDP 212 Query: 97 KEKLKKSQDEFIKIRD-------RFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCV 146 E + + + N + A L + Y+EAK++ V Sbjct: 213 GEVRDWVLERVQTFEELPYVAGAKKNPTQAAGELAAMLRTRGSVADMVVRYQEAKRQRGV 272 Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 LDF DL+ + ++A +L+DE QDTS Q + L Sbjct: 273 LDFGDLVALAARIASDIPLAATT---ERARYKVVLLDEFQDTSHAQLVLFSRLFGQ---- 325 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII------EL 260 + AVGD QSIY F GA ++ + R + L Sbjct: 326 ------GHAVTAVGDPNQSIYGFRGASAGQLFHFVQEFPVRHADHSGDNESYSVAPTSYL 379 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++R+ +IL + + + + + G V + V S Sbjct: 380 TTAWRNGRNILQAANTIAA--------PLNRAAASEGPAGDRKTAGNVSVPALVPSPAAV 431 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + + + D A IA + T+F K + VL Sbjct: 432 DGSVVIGRFGTDEDE----------ATAIARDVRRY--QRTVFEEEKDGTPVKPTMAVLC 479 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R+R R I L D I DL+A R + + + + Sbjct: 480 RRRAQM----ECLRREFELQGIPYEIVGLGGLLDTPEIVDLVATLRVLADPGRSDALMRL 535 Query: 441 LKSPLFNFSEDDIF---KICTQRHETETVYEYIQKFANCGISKF---------------- 481 L + D+ + E + + Sbjct: 536 LAGARWRIGPADLMAFSDWSRFLARRRSAPEAHPESFDDNEEPAGVVVESDITDAASLVE 595 Query: 482 -------------------QHVIKYIHELIHIAQFCS------PHDFFTLILGAKKGRQQ 516 + + L + + A + Sbjct: 596 ALDFLPRPGWTSGHGRSLSAAALDRLTSLASELRSLRSYIGDDLTTLLGEVERAMLLDIE 655 Query: 517 FISRFG---NEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPT----IKRAHSAN 568 ++ G ++ LD F + Q S L +S LE N Sbjct: 656 VAAKPGISIHQARRNLDAFQDAAAGFLQTSQRIDLLAFLSWLEAAASEEGGLDVAPVETN 715 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIWI 622 V+++TVH +KGLE VVF+ + F + P D +P W Sbjct: 716 REAVQLLTVHASKGLEWDVVFVPGLNAGSFPSNRDSRWSTGAAALPWPLRGDRADLPQWD 775 Query: 623 PQSKSRNNIVSD---LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679 + + ++ + E RL YV TRA L + + Sbjct: 776 LDQPDQKGWLDAEKDFKSEVQHHGEAEERRLAYVAYTRAKFVLWASSAAWNGSRSGMAGM 835 Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 + + V+ I E ++ Sbjct: 836 SAFLSELAPLAAVAAVEDGAARMQSLASAVIHAESVAEEALPEESPLTAALEVAQFPYDP 895 Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN---RGLI----------- 785 + P S +D + + G+ Sbjct: 896 LEGPSDPRTGARLRLTPGRRSAMDRAAALVRGYIEEPGHAPSNDLTGVAGKWSQEAELLL 955 Query: 786 -----------IH------------------KLLQVI----FTLP--EHKRKNFITSYCT 810 +H +L + P ++ ++ Sbjct: 956 DRQRQAKTVQDVHLPSHISASLFVDLGADPAAVLSQLRRPVPREPGISARKGTAFHAWVE 1015 Query: 811 KNA---KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS---YSEVSVSGKINCPKKDIII 864 + + E I A + V + D+++ Sbjct: 1016 EYFGTTGMLDLDEAPGSDSHIDEAYGLDDTVAAFKKSEWAQRAPAFVEVPVETRIGDVVV 1075 Query: 865 SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLV 921 GRID + + ++KT + I QL++Y P + + Sbjct: 1076 RGRIDAVFRDADGRWQLIDWKTGRRPAGQQLAIR---AVQLAVYRLAWARLKDVPLEDVS 1132 Query: 922 CLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951 YV++ V + I K Sbjct: 1133 AAFYYVADDAVVRPHDLGSAEELELIVAKA 1162 >gi|188585100|ref|YP_001916645.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349787|gb|ACB84057.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 726 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 109/639 (17%), Positives = 203/639 (31%), Gaps = 123/639 (19%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM------FKSTLASLTLAKYLNA 135 K+ + + K+ +K+ L + K + K+ + + Sbjct: 108 KDFLIYDTRDKTKIVKDLLADFNLDKKKYPHQAVAKKISGVKNNLQDPRELFYPYDEVFE 167 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 Y++ KK LDF+DL++ T L ++ + +IL+DE QDT+ Q + Sbjct: 168 AYQKRLKKENALDFDDLLLLTLRLFEQYPDR---LQYYQNKFQYILVDEFQDTNPAQNRL 224 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 I L+ +F VGD+ QSIY F GA+ K +L ++ Sbjct: 225 ISLLS----------PPQDNVFVVGDDDQSIYLFRGADVKNILEFEKTYPN--------A 266 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 + +L ++RS+ IL ++V + + + +LW Sbjct: 267 QVYKLEKNYRSSKTILEAANQVVTNNPSRKSK---------------------ELW---- 301 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375 + D + A IA I Q Sbjct: 302 ---TDNDEGYPLQYYEADDERDE-------AYFIAEEIRA-------------NRYQLPL 338 Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435 I VL R + ++ + R IS D +KD+MA + + D Sbjct: 339 IAVLYRTNAQSRVLEDIFR----KMGISYEVVGGTGFYDRKEVKDIMAYLMVVQCPQSDS 394 Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK-----FQHVIKYIH 489 ++ P + + K+ T+++ + + ISK + I Sbjct: 395 QLERIINEPKRGIGKTSVDKLKDYANRNNITLFDALLEVDYTDISKRGKNSVKKFTDMIG 454 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSS 546 + ++ + + + + S+ E + + E + E + Sbjct: 455 NFRKMREYLTVRELIEEVAEKSGYLEALRSQNTKEAETRMENVREIYSMAKEFEAEGGET 514 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 LQE ++ +V +MT+H+AKGLE P VFL VF H Sbjct: 515 LQEFLTHSTLMGDIDTWE-DEEQAQVVMMTLHSAKGLEFPGVFLTGLEEGVFPH------ 567 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 + + +++ EE RL YVG+TRA L + Sbjct: 568 ----------------------------IRTYDSEASMEEERRLCYVGITRAEQVLYLTW 599 Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 + + V + + + + L+ Sbjct: 600 ARERTLNGMTRMLQPSRFVSEIGEDLKDTQHQTLSGQGQ 638 >gi|89074458|ref|ZP_01160935.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34] gi|89049746|gb|EAR55296.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34] Length = 723 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 177/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ + +LL+ IR HIL+DE QDT+ I Sbjct: 172 RIYTAYQEACDRAGMVDFAELLLRSYELLRDN---KHIREHYQARFKHILVDEFQDTNSI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + R Sbjct: 229 QFAWLRLMAG----------PDCHVMIVGDDDQSIYGWRGAKIENIQRFLNEF------- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + S I L ++RST +IL +++ + G LW Sbjct: 272 -KGASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S F+ + + AR I Sbjct: 310 -------TDGGEGEPISLYSAFNEIDE-------ARFAVGKIKEWRDQGGSL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + L R + ++ + + IKD ++ R I ++ Sbjct: 348 --NETAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLISNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484 DD SF ++ +P + + I R T+++ + + Sbjct: 402 NDDASFERVVNTPTRGLGDRTLETIRLVARDRGLTMWQSSIALLEEQVLAGRAANSLRRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE- 540 I+ I+ L + ++ R + G + + L+E + T + E Sbjct: 462 IELINALEDDTADLPMYQQTDEVIRHSGLRAMYEQEKGEKAQARIENLEELVTATRQFEI 521 Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + S + V++MT+H+AKGLE PVVF+V +F Sbjct: 522 PEEAESMTPLAAFLAHAALEAGDGQADDFEDAVQLMTMHSAKGLEFPVVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVGMTRA Sbjct: 582 SSRTT----------------------------------EEVGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 +L I Sbjct: 608 QKLYITYAE 616 >gi|256397096|ref|YP_003118660.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM 44928] gi|256363322|gb|ACU76819.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM 44928] Length = 806 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 114/622 (18%), Positives = 196/622 (31%), Gaps = 117/622 (18%) Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 T A LA+ + Y + LDF+D+I+ T LL+ I + + Sbjct: 216 RAQTEAERQLAQ-VYRLYADRLTAAKALDFDDIIMTTVHLLQ---AFPMIAEHYRRRFRN 271 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVG-----------KNTHSSPRTLFAVGDEKQSIYS 228 IL+DE QDT+ Q+++++ L P L VGD QSIY+ Sbjct: 272 ILVDEYQDTNTAQYQLVKELVGQHEKRTVDGDLVRPGLNTEDLPPAELCVVGDADQSIYA 331 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 F GA + ++ +R +I+L ++RST ILT + V + + + Sbjct: 332 FRGATIRNIIEFERDYP--------DAKVIKLEQNYRSTQTILTAANAVIENNKGRRAKN 383 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + + + D + A+ Sbjct: 384 ---------------------LW-------TDSGDGKLITGYVADDEHSE-------AQF 408 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 +A I + + V R + + + + Sbjct: 409 VAEEIDRLSDAKET---------TYGGVAVFYRTNAQSRVFEEVF----VRVGLPYRVVG 455 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467 + ++D +A R + +++D +S +L +P E + E T Sbjct: 456 GVRFYERKEVRDALAYLRALANEDDIVSVRRVLNTPKRGIGEKAEESLERLSARERITFG 515 Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + +++ A + Q + + EL +A P IL Q+ Sbjct: 516 DALRRADEAPGLAARSVKAVQGFTQMMDELREMAAEYGPAHVLEAILERTGLLQELQDSD 575 Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNE-VRIMT 576 + I+ L E L L EQ L E + + + + +H V +MT Sbjct: 576 DPQDETRIENLRELLAVALEFEQGQPEGRLPEFLERVALVADSDQIPDGEDHEGMVTLMT 635 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE PVVFL VF H + Sbjct: 636 LHSAKGLEFPVVFLTGMEDGVFPH----------------------------------MR 661 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 K EE RL YVG+TRA +QL + + S + + + Sbjct: 662 SMGDKKEMEEERRLAYVGITRAREQLYVSRSVYRSAWGAPQYNPPSKFLGEIPEPLVEWE 721 Query: 697 KIKLTNSINKDEWIAYEWSTHH 718 + + T Sbjct: 722 RTAPEPKTGERSPFGDRRGTSR 743 >gi|89076421|ref|ZP_01162746.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34] gi|89047889|gb|EAR53482.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34] Length = 1203 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 143/862 (16%), Positives = 281/862 (32%), Gaps = 138/862 (16%) Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198 +AK L F+DL+ + D + KI + +IDE QDT +Q+ + S Sbjct: 345 QAKAHKGWLSFDDLLTQLGAAI-DNDQDDLLASKIRSQYPVAMIDEFQDTDPLQYGIFSS 403 Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258 + D LF +GD KQ+IY+F GA+ ++ +R Q T Sbjct: 404 VYND--------HPECGLFMIGDPKQAIYAFRGADIFTYIQARRQVQDHYT--------- 446 Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQVVSQ 317 L ++RSTAD++ V+ VF P + +D + + H + W Sbjct: 447 -LGTNWRSTADMIASVNSVFDTPNSPFIYDQDITFDPVGHSPKAPDRS-----WWL---- 496 Query: 318 HDSQCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMIG-----TDTIFSNGKKR 369 + + P W + + S +A A I +++ + Sbjct: 497 -NDEQQPAITFWLQDSLDGKPITKGDYESTMATATAAQIQHILEQSQQGQGYFLDKEAQH 555 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 +QA DI VLVR ++ L+ L SV ++R + D+ L + +L Sbjct: 556 PVQAGDIAVLVRTGREGKLVRE---ALAKQGIASVYLSNRDSVFSTAEAADVQRLLQAVL 612 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 + +DD + L S LF+ + ++ + +E E +++ + + V+ + Sbjct: 613 TPDDDRALRAALASGLFSLTAIELDTLNNDENEWEVAVNSFKQYRQQWLK--RGVMPMLR 670 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549 ++ +L + G ++ + E L + + Y+ L+ Sbjct: 671 SVMAKNN------IAERLLVEEGGERRLTDLL------HIGELLQEASQTLDSDYALLRW 718 Query: 550 LISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L + + + N V+I+T+H +KGLE +VF+ S + K Sbjct: 719 LAENVAEPNGNSDEQILRLESERNLVQIVTIHKSKGLEYDLVFMPFVCSY---REVDSKG 775 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-C 665 + DD + I + +D I K E RL+YV +TRA + Sbjct: 776 EVKYHDEDDNVTVLDITK-------HADSISKADKERLAEDLRLIYVALTRAVYSCFVGM 828 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDER-------------VKKIKLTNSINKDEWIAY 712 K + N E + Sbjct: 829 APVRNGRSSKEPTGLHKSAMGYLIQNGEECGVAALELALAKLSEAQPTITIAEPPVLPVD 888 Query: 713 EWSTHHPENTPLEREETIKQL--------------MDEQKIPKKLFSPIKNDINEPYILN 758 +W+ + + L R E +Q+ Q DI+ Sbjct: 889 KWAGQNEQTDALNRREFERQIERNWWMTSYSNLVKQGHQAHHDSSLDLPGFDIDSVQKET 948 Query: 759 PSTIDTKGKTNLE-SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT----KNA 813 P +T+ + E S+ + + G +H + + I + ++ Sbjct: 949 PENSETEVELEPEYSIYTFPRGARPGTFLHTVFEEIEFTRPVDSPETVAKLTELLQLEHY 1008 Query: 814 KLWPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKINCPKKDII------- 863 +L + L+ + L+ + + +E+ I + ++ Sbjct: 1009 ELAWLTVLQQLINDVLHCPLDGEQLRLAEKIPQQRLTEMEFLIPIEMLQSPLLNKVIVKH 1068 Query: 864 ------------------ISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPY--- 898 + G ID + Q ++ ++K+++ E + Sbjct: 1069 DSISAKAGELGFSTVSGMLKGFIDLVFEHQGKYYVLDWKSNYLGDDPQVYRGEQLVEAMR 1128 Query: 899 --THIAQLSIYEKILKDSYPNK 918 + Q IY L+ ++ Sbjct: 1129 DHRYDLQYQIYALALQRFLRSR 1150 >gi|304396685|ref|ZP_07378565.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. aB] gi|304355481|gb|EFM19848.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. aB] Length = 1179 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 130/906 (14%), Positives = 279/906 (30%), Gaps = 127/906 (14%) Query: 76 QKFTPQKNIITQEINKKSPDLKEKL----KKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 + + +E+ + + ++ + + + D+F + + Sbjct: 274 ASSETRDYQLPKELERFGQQVLDEKTKKGEAPRHSLFEAVDQFLAEPLSLRDVIIAQALT 333 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + A + K+ +L F+DL+ ++ L++ + I LIDE QDT Sbjct: 334 DVRATVQREKRLRALLGFDDLLSKLDEALQQPG-GVLLAETIRARFPVALIDEFQDTDPQ 392 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ + R+L + + LF +GD KQ+IY+F GA+ LR + T Sbjct: 393 QYRIFRTLY--------INQPEQALFLIGDPKQAIYAFRGADIFTYLRARNEVSAHYT-- 442 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 L ++RS+ +++ V+++FS ++ S + + Sbjct: 443 --------LDTNWRSSPEMVESVNRLFSQIDSPFLFSAIPFQPVMPAAPNQS-------- 486 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNG 366 + D Q P W + + +A++ A IS + + Sbjct: 487 --LKLIFDEQQQPALRFWLQPGEGVGNSDYQQFMAQQCAADISRWLVAGQQGRACLGKGD 544 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + ++A DI VLVR R + LI L SV + R + ++L+ L + Sbjct: 545 ALQPVRASDITVLVRSRNEAGLIRDALNALSIP---SVYLSSRDSVYTTPEARELLWLLQ 601 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486 I + E + L + +F + + E + + E +Q + Sbjct: 602 AIQAPEQERLLRSALATSIFAIDAATLDALTQNEREWDALVEQFAV--------WQQLWH 653 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543 L + +L ++ G ++ L E L L + Sbjct: 654 QRGVLPMLRDVMIKRQLAENMLASENGERRLTDLM------HLGELLQEASVQLESPHAL 707 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L + I+ + + ++ + V+I+T+H +KGL+ P+V+L + + Sbjct: 708 VRFLAQQIARPNSQAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAGFREAASAL 767 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL- 662 D + + ++ E RLLYV +TR+ Sbjct: 768 YHDRDNFMALLDVQGD-------------AQSLALAEEERLAEDLRLLYVALTRSIYHCS 814 Query: 663 -----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDE------------RVKKIKLTNSIN 705 +I E ++ +V D + + + Sbjct: 815 VGIAPLIKGTRKKEGESDLHKSALGYLVQQGEAADAQQLSQKLNALTGEGIALVEADLMP 874 Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765 + W E + + R + ++ S D + ++ + D Sbjct: 875 GERWQDAEQGDEVLSSRDVTRALADAWRVTSYSGLQQHHSSSLLDALPNFDIDAAGEDES 934 Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825 G+ + + G +H L + I R + + Sbjct: 935 GEEAALTPHHFPRGAAPGTFLHGLFESIDFTELPDRVWLEDQLQHNGYPSDWLPVLEQWI 994 Query: 826 LSITRL-LENP--MMTTAMSCDSYSEVSV--------------------------SGKIN 856 + L ++ S + E+ + ++ Sbjct: 995 ERVLHTPLNAEGLTLSAIKSSERLIEMEFYLPINNLLTAADLDDLLRQHDSLSLQAAPLD 1054 Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIY 907 + ++ G ID + Q ++ +YK++ + P + Q +Y Sbjct: 1055 FRQVRGMLKGFIDLVFRWQGKYYLLDYKSNWLGDSHAAYTPEAMAQAMIGHRYDLQYQLY 1114 Query: 908 EKILKD 913 L Sbjct: 1115 TLALHR 1120 >gi|218193239|gb|EEC75666.1| hypothetical protein OsI_12457 [Oryza sativa Indica Group] Length = 963 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 133/967 (13%), Positives = 294/967 (30%), Gaps = 137/967 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 E I + + + +L ++G ++ L Sbjct: 4 EQIVARIDAIKAQWRAAAGDLEALIAQSGVDKRSYSSKHLPNWLNKVGEWSGQETQDYQL 63 Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 + +++++ ++ K P + D + L + Sbjct: 64 PKELDKFRQSVLLEKTKKGEPP--------RHALFTAIDELFDEPLTLRDLIMARALSEI 115 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 ++ K++ L F+DL+ + L+ + I Q +IDE QDT Q+ Sbjct: 116 RTSIQQEKRQRAELGFDDLLSRLDSALQ-SGGGEQLAQAIRQRYPVAMIDEFQDTDPQQY 174 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 + + L L +GD KQ+IY+F GA+ +R + T Sbjct: 175 RIFQKLY--------VGRPDCGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 222 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 L ++RS+ ++ V+ +FS E + I ++ Q +L Sbjct: 223 ------LETNWRSSPSMVASVNHLFSQVE--KPFLFGQIPFIEVNAAEKNQGLAFELH-- 272 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKK 368 + P + W + ++AR A I + + + S Sbjct: 273 ------GKPQPAMQFWLQQGEGAGVSGYQQLMARLCATQIRDWLSAGQQGLARLQSGKAS 326 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R +QA DI VLVR R + L+ L SV ++R + D KDL+ L + + Sbjct: 327 RPVQASDITVLVRSRNEAALVRDALSALSIP---SVYLSNRDSVFDTPEAKDLLWLLQAV 383 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 L+ E + + + + L + + E ++ + + + + Sbjct: 384 LAPEQERTLRSAMATGLMGLDAPTLDGL----SRDERAWDALVNEFDNYRTLWLRR---- 435 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545 L +++ +L + G ++ L E L L +E Sbjct: 436 GVLPMLSEVMKARHLAENLLASAGGERRLTDVL------HLGELLQEAAAQLDSEHALVR 489 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L + I++ + + ++ + V+++T+H +KGLE +V+L G+ + + Sbjct: 490 WLAQQIAQPNRQSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQALYH 549 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 Q+ + + ++ E RLLYV +TR+ I Sbjct: 550 DR-------------HSFQALLDLDADEESQAWAEEERLAEDLRLLYVALTRSVYHCSIG 596 Query: 666 ------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + ++ +V D + +L + ++ Sbjct: 597 IAPLFQGTRKKQGDTDLHRSALGYLVQGGQPGDAVYLQERLQQLVGGGIALSLVEPPDAE 656 Query: 720 ENTPLE-REETIKQLMDEQKIPKKLF-----------SPIKNDINEPYILNPSTIDTKGK 767 P E + ++I + + D+ ++ + + Sbjct: 657 PWQPQASLAEALAAKSFTRRIQDFWRVTSYTGLQQHGASLMQDLLPRLDVDAAGERGEES 716 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 + + + G +H L + + + + + + LL Sbjct: 717 EPALTPHTFPRGATPGTFLHSLFETLDFTQPLDEQWLLE---QLQQQGFAEHWQPILLAW 773 Query: 828 ITRLLENPM------MTTAMSCDSYSEVSVSGK--------------------------I 855 + LL P+ + +E+ + Sbjct: 774 MQVLLNTPLDDSGVTLAALTPQHKQAELQFYLPINRLLQAKELDALVKRYDPLSARCPAL 833 Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSI 906 + + ++ G ID + Q ++ +YK++ + + + Q + Sbjct: 834 DFHQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTRPAMEQAMAEHRYDLQYQL 893 Query: 907 YEKILKD 913 Y L Sbjct: 894 YTLALHR 900 >gi|261365097|ref|ZP_05977980.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996] gi|288566523|gb|EFC88083.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996] Length = 666 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 205/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE L K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 126 KEALFKAQHQISLWKNDLKTPEDVLQTASNAWEEQIARVYASYQETLQSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q++ Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 A + I ++G D Q D VL R + Sbjct: 318 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R ++ + D IKD+++ R + + DD +F+ + +P + Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ + Sbjct: 417 LGKLNTYAHEHECSLYEAAQTEEALALLNNTNRQHLQAFMDMFGSYRAKAETSEAGELIN 476 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + + R + + ++ EL + Sbjct: 477 SLLKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQNGKNIIELAQTVALMTLLE 536 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V++ T+H +KGLE P VFLV + H Sbjct: 537 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 620 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 621 SRFIDEMPQED 631 >gi|170765721|ref|ZP_02900532.1| exodeoxyribonuclease V, beta subunit [Escherichia albertii TW07627] gi|170124867|gb|EDS93798.1| exodeoxyribonuclease V, beta subunit [Escherichia albertii TW07627] Length = 1180 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 134/973 (13%), Positives = 301/973 (30%), Gaps = 136/973 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSL--SMETGNPTILKKAQTLQQASQTQCIEERFS 67 +E+ + + V ++ + +K QA I Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 ++ + Q P + + + ++ E + + D+ + L Sbjct: 275 EETNSY--QLPEPLEKFSQRFLEDRTKAGGE---TPRHPLFEAVDQLLAEPLSIRDLVIT 329 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + K++ L F+D++ + L+ + + I +IDE QD Sbjct: 330 RALAEIRETVASEKRRRGELGFDDMLSRLDSALR-SESGEALASAIRARFPVAMIDEFQD 388 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T Q+ + R + H L +GD KQ+IY+F GA+ ++ + Sbjct: 389 TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 440 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 T L ++RS ++ V+K+FS ++A E ++ Sbjct: 441 YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALH-- 488 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362 + P + W ++ + S +A+ A I + + + Sbjct: 489 --------FVFKGETQPAMKMWLMEGENCGVDDYQSTMAQVCAAQIRDWLQAGQRGEALL 540 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + R ++A DI VLVR R++ + L SV ++R + + L ++++ Sbjct: 541 MNGDAARPVRASDISVLVRSRQEAAQVRDALTLLDIP---SVYLSNRDSVFETLEAQEML 597 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L + +++ E + + L + + + DI + E+ ++ Sbjct: 598 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYR 649 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539 + + + + S + +L G ++ + E L L + Sbjct: 650 QIWRKRGVMPMLRTLMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 703 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L + I E + + + ++ + V+I+T+H +KGLE P+V+L + Sbjct: 704 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRIQ 763 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ N + + + E RLLYV +TR+ Sbjct: 764 DQAFYHDR-------------HSFEAVLDLNEAPESVDLAEAERLAEDLRLLYVALTRSV 810 Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 L + ++K + E + L I W T Sbjct: 811 WHCSLGVAPLVRRRGDRKGPTDVHQSALGRLLQKGEPLDAAGLRACIEALCDEDIAWQTA 870 Query: 718 HPENTPLEREETIKQLM------DEQKIPKKLFSPI----------KNDINEPYILNPST 761 + R T+ + ++ ++ + Sbjct: 871 QIGDNQPWRVNTVSTAELNVKTLQRLPGDNWRVTSYSGLQQRGHGIAQELMPRLDVDAAG 930 Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 I + + + + + G +H L + + + N++ + + Sbjct: 931 IASVVEEPTLTPHQFPRGASPGTFLHSLFENLDFTQPVE-PNWVREKLELGG--FEPQWE 987 Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSV----SGKINCPKKDIIIS------ 865 L IT +L+ P+ ++ + D E+ S + + D +I Sbjct: 988 PVLTEWITAILQAPLNESGVSLSQLSARDKQVEMEFYLLISEPLIASRLDALIRQFDPLS 1047 Query: 866 ----------------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTH 900 G ID + + ++ +YK++ + + + Sbjct: 1048 AGCPPLEFMQVCGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTRQAMAAAMQAHRY 1107 Query: 901 IAQLSIYEKILKD 913 Q +Y L Sbjct: 1108 DLQYQLYTLALHR 1120 >gi|323183364|gb|EFZ68761.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1357] Length = 1180 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDKQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQE---------IEHIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAEAMQAHRYDLQYQLYTLALHR 1120 >gi|331674305|ref|ZP_08375065.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA280] gi|331068399|gb|EGI39794.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA280] Length = 1183 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 296/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 218 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 275 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 276 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 334 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 335 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 393 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 394 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 445 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 446 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 489 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 490 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 545 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 546 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 602 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 603 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 654 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S +L G ++ + E L L +E Sbjct: 655 WRKRGVMPMLRALMSARKIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 708 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 709 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 768 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 769 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 815 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 816 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 875 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 876 GDNQPWQVNDAITAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 935 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 936 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 992 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ ++ + D E+ I+ P Sbjct: 993 LTEWITAVLQAPLNETGVSLSQLSARDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1052 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1053 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1112 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1113 QYQLYTLALHR 1123 >gi|311744700|ref|ZP_07718497.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272] gi|311312009|gb|EFQ81929.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272] Length = 774 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 100/618 (16%), Positives = 183/618 (29%), Gaps = 132/618 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L Y+ +DF+DLI+NT L + + + H+L+DE QD Sbjct: 190 ELYAEAYGTYQRRLIAANAMDFDDLIMNTVHLFQAFPA---VAESYRRRFRHVLVDEYQD 246 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +IR L + L VGD QSIY+F GA + +L + Sbjct: 247 TNHAQYSLIRELCD----------PESDLLVVGDSDQSIYAFRGASIRNILEFEDDFP-- 294 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL+ + V S E + S Sbjct: 295 ------DARTILLEQNYRSTQTILSAANAVISRNEGRPEKNLWS---------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 ++ ++ D + A+ IA I + G Sbjct: 333 ------------AEGEGEKIVGYVADDERDE-------AQFIADEIDTLTDDGAATPAG- 372 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + V R + + + + + ++D +A R Sbjct: 373 --------VAVFYRTNAQSRIFEEVF----IRVGLPYRVVGGVRFYERKEVRDALAYLRA 420 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISK 480 +++ D +S ++ P + + E + +E +++ A + Sbjct: 421 LVNPRDTVSMRRIVNEPKRGIGDRAEASLEVFAAREGVSFWEAMRRCDEVADLATRSRTA 480 Query: 481 FQHVIKYIHELIHIAQFCSPHD-FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 + EL+ +A+ +P D L + ++ L E + Sbjct: 481 VAGFAGTMAELMELAESGAPADQVLEAALTRSGYLAALEKSDDPQDESRVENLAELVAVA 540 Query: 537 LRN-----------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + SL + + + V +MT+HT Sbjct: 541 REFVTAAATVDDDAPADPDDVDLTPGSLAAFLERVSLVADADSI-PDSGDGVVTLMTLHT 599 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVFL +F H Sbjct: 600 AKGLEFPVVFLTGLEDGIFPHMRSMGDP-------------------------------- 627 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 + E RL YVG+TRA ++L + + ++ S + V + + ++ Sbjct: 628 --AELAEERRLAYVGITRARERLYLTRATSRSAWGAPSYNPASRFVEEVPDHLVDWRREA 685 Query: 700 LTNSINKDEWIAYEWSTH 717 + + Sbjct: 686 SPPTQWMPSTPSVTARAQ 703 >gi|238892413|ref|YP_002917147.1| DNA-dependent helicase II [Klebsiella pneumoniae NTUH-K2044] gi|238544729|dbj|BAH61080.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 722 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 311 W-------TDGADGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 351 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 352 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483 + DD +F ++ +P + + + R T+++ ++ A S Q Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQR 462 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 463 FMELIDALAQETTDMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 522 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 582 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 583 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 608 Query: 659 SDQLIICKHSNTS 671 +L + Sbjct: 609 MQKLTLTYAETRR 621 >gi|261342239|ref|ZP_05970097.1| exodeoxyribonuclease V, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288315575|gb|EFC54513.1| exodeoxyribonuclease V, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 1180 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 125/903 (13%), Positives = 286/903 (31%), Gaps = 142/903 (15%) Query: 89 INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA---------SLTLAKYLNAHYEE 139 + ++ + + I + ++ LA + Sbjct: 282 LPDALEKFSQRFLAERTKADGIVPEHPLFVSIEALLAEPLSLNDLIITRAMAEIRDAVAR 341 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 K++ L F+D++ ++ L+ + + + I +IDE QDT Q+ + R + Sbjct: 342 EKRRRGELGFDDMLSRLDEALR-SENGEALAHAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 L +GD KQ+IY+F GA+ ++ + + T Sbjct: 401 WR--------QQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVEAHYT---------- 442 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L ++RS+ ++ V+ +F + A E ++ S + +++ Sbjct: 443 LDTNWRSSPGMVESVNALFERMDAAFMFREIPFKPVKSASKNAD----------LRFEYN 492 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-----VIQAK 374 P W + + +A+ A I + + + + ++A Sbjct: 493 GAVQPAMRFWLLDGEGYGVADYQTAMAQHCAAQIRDWLSAGSRGEALLWKGENATPVKAS 552 Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434 DI VLVR R++ LI L SV ++R + D L ++++ L + +L+ E + Sbjct: 553 DITVLVRSRQEAALIRDALTLLTIP---SVYLSNRDSVFDTLEAQEMLWLLQAVLAPERE 609 Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH--VIKYIHELI 492 + L S + + DI + + ET ++ + ++Q V+ + EL+ Sbjct: 610 STLRSALASSMLGLNARDIDAL----NNNETAWDEVVDEFVHYRERWQKRGVMAMLRELM 665 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQE 549 + +L G ++ + E L L +E L + Sbjct: 666 AQRR------IAENLLATAGGERRLTDIL------HISELLQEAGSQLESEHALVRWLSQ 713 Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 I++ + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 714 QIADPNSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRET 773 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 + + ++ + E RLLYV +TR+ + Sbjct: 774 FE-------------AVLDLSKAETSVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 Query: 670 TSNEKKSNQRTWYD------------------MVYDSFHNDERVKKIKLTNSINKDEWIA 711 + T + + + + + W Sbjct: 821 FRRRGEKTGETDFHLSALGRLIQRGEPKDAAGLRQCIESLCGDHIALHVPELPDNRRWHL 880 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 E + P+ R + ++ I D+ ++ + + + Sbjct: 881 PEQAEPDLNARPIVRTVADDWRVTSYSGLQQHGQSIAQDLMPKLDIDAAGVGEVPVEPVL 940 Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831 + + + G +H L + + + + ++ + + AK L + + Sbjct: 941 TPHQFPRGASPGTFLHSLFEEL-DFTQPVSEAWVEKML--QSGGYEAKWQPVLTEWVNAI 997 Query: 832 LENPM------MTTAMSCDSYSEVSVSGKINCPKK------------------------- 860 L+ P+ ++ + D E+ I P + Sbjct: 998 LQAPLTEEGISLSQLTAKDKQVEMEFYLPIASPLRAEALDALIREYDPLSAGCPPLNFRQ 1057 Query: 861 -DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKI 910 ++ G ID + Q ++ +YK++ + + Q +Y Sbjct: 1058 VQGMLKGFIDLVFRHQGRYYLLDYKSNWLGENSDAYTQQAMASAMQMHRYDLQYQLYTLA 1117 Query: 911 LKD 913 L Sbjct: 1118 LHR 1120 >gi|238918094|ref|YP_002931608.1| DNA-dependent helicase II [Edwardsiella ictaluri 93-146] gi|238867662|gb|ACR67373.1| DNA helicase II, putative [Edwardsiella ictaluri 93-146] Length = 719 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 114/693 (16%), Positives = 213/693 (30%), Gaps = 131/693 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLAVENCSPFSIMAVTFTNKAAAEMRHRIEALIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + LK +K + + R Sbjct: 90 FHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + Y+EA + ++DF +L++ ++L + I Sbjct: 150 KDDGLRPQHIESYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLHKP---QI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 N+IL+DE QDT+ IQ+ IR L D + VGD+ QSIY + Sbjct: 207 LEHYRARFNNILVDEFQDTNRIQYAWIRMLAGD----------SGRVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + I L ++RS+ +IL + + + G Sbjct: 257 RGAQVENIQKFLDDFP--------GAQTIRLEQNYRSSGNILRAANALIENNDGRLGKK- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TEDGEGEPISLYCAFNELDE-------ARFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I K+ +L R + ++ Sbjct: 334 VNRIKAWQDNGGAL----------KECAILYRSNAQSRVLEEAL----LQAATPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD +A R + ++ DD +F ++ +P+ + + + R T+++ Sbjct: 380 MRFFERQEIKDALAYLRLLSNRNDDAAFERVVNTPVRGIGDRTLDVVRQTARDRQLTLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + ++ I L + H ++ RQ + G Sbjct: 440 ATRALLQEQVFPGRAANALRRFLELIEALAQDSDDLPLHVQTDRVIRDSGLRQMYEQEKG 499 Query: 523 N---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 I+ L+E + T + L L + L + A + V++MT+H Sbjct: 500 EKGQTRIENLEELVTATRQFSYEDDDELSPLQAFLSHAALESGEGQADAYQDAVQLMTLH 559 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE P VF+V +F + Sbjct: 560 SAKGLEFPQVFIVGMEEGMFPSQMSLDEGG------------------------------ 589 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L + + Sbjct: 590 ----RLEEERRLAYVGVTRAMRKLTLTYAESRR 618 >gi|330890591|gb|EGH23252.1| DNA-dependent helicase II [Pseudomonas syringae pv. mori str. 301020] Length = 727 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 119/661 (18%), Positives = 216/661 (32%), Gaps = 124/661 (18%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L F Q+ ++ + + + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S LT K + YE A ++ V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + H+L+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + +I L ++RSTA IL + + Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T I DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P + E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARSIGEKTVEAIREHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ + I+ I L H ++ Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570 +Q G ++ L+E ++ E + L L + L + + Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 EE RL YVG+TRA QL++ V + Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640 Query: 691 N 691 Sbjct: 641 A 641 >gi|241205526|ref|YP_002976622.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859416|gb|ACS57083.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 826 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 102/597 (17%), Positives = 181/597 (30%), Gaps = 108/597 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ DF DL+++ + +K + + +IL+DE QDT+ Sbjct: 223 RDLYFAYQARLTTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 279 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + + VGD+ QSIY + GAE +LR ++ Sbjct: 280 AQYMWLRLLAQRP------KGELQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 328 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + E G + + Sbjct: 329 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR----------------- 368 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 S + + + +DS + AR I I + + Sbjct: 369 ---------SDPDDAKVQVHASWDSEEE-------ARAIGEEIEQLQRGKHLL------- 405 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D+ +LVR L ++ + L I+D MA R + Sbjct: 406 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQ 458 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + + + R + + Sbjct: 459 SADDLAFERIVNTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD 518 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 VI+ + + + IL + + E L+ E Sbjct: 519 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 575 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 S + + LE + + N + V IMT+H+AKGLE VFL +F H+ Sbjct: 576 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 633 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL YVG+TRA + Sbjct: 634 LD--------------------------------ESGRAGLEEERRLAYVGITRAKHRCH 661 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 I SN + + V +++ + Sbjct: 662 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEP 718 >gi|113968817|ref|YP_732610.1| DNA-dependent helicase II [Shewanella sp. MR-4] gi|113883501|gb|ABI37553.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-4] Length = 722 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 189/551 (34%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R R Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERLGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGEPISLYCAFNEMDE-------ARFIVGRINDWYEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I ++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R + T+++ + A S + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I L Q + + ++ A + + + G + + L+E + E Sbjct: 463 DLIVTLQEETQDMALYRMTDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|93569010|gb|ABF13475.1| helicase [Arcanobacterium pyogenes] Length = 868 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 114/739 (15%), Positives = 209/739 (28%), Gaps = 126/739 (17%) Query: 69 LSSFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKS--TLA 125 + S F ++T +++ D+K+ +KK +++ T F+ Sbjct: 165 MRSTFTIYDSADSNRLMTMVAREENIDIKQFPVKKLLRRVSDLKNDMVTASAFEMRNLNP 224 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + Y+ K +DF+DLI+ T +LLK + I + HIL+DE Sbjct: 225 EERVIAQAYSGYQRRLKAANAVDFDDLIMLTVNLLKDNPL---IAEHYRRRFRHILVDEY 281 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT++ Q+E+IR L G + L VGD QSIY+F GA + + ++ Sbjct: 282 QDTNVAQYELIRVLV-----GGESDEPHGELTVVGDADQSIYAFRGATIRNIQDFEQDFP 336 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I L ++RST +IL+ + V + + Sbjct: 337 N--------ATSILLEQNYRSTQNILSAANAVIANNLGRRPKR----------------- 371 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW DS + + + + S A + I + Sbjct: 372 ----LW------TDSGSGEKIVGYVA--------DAESDEASFVVEEIDQLRDKGFA--- 410 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + V R + + + I + IKD +A Sbjct: 411 -------YGQVAVFYRTNAQSRALEEMF----VRSGIPYKVVGGTKFYERKEIKDAIAYL 459 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------ 478 + + + +D +S +L P + + + A+ Sbjct: 460 QAVANPDDTVSVRRILNEPRRGLGAKAEETVAAHAARYGISFGAALTDVAHPDDAASAGR 519 Query: 479 ----------SKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE--- 524 + + + E+ A P D I+ + Sbjct: 520 ATVGLQARSANAITDFVVMLEEIRAKAVAGAPPADILDEIMDRSGYLVSLQRSNDPQDEV 579 Query: 525 VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKG 582 ++ L E + + + L + + ++ EV +MTVHTAKG Sbjct: 580 RVENLAELHSVASDFSVVNEAGTLGDFLDQVSLVADSDQIPDEDGGEGEVVLMTVHTAKG 639 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE PVVF+ F H Sbjct: 640 LEFPVVFVTGMEDGTFPHIRAMNAPEELEEERRL-------------------------- 673 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 YV TRA +L I + + ++ + Q + D V + ++ Sbjct: 674 --------AYVAFTRARQRLYIT-RAGSRSQWGAPQELPASRFLEEIPEDVIVWRRDESS 724 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 + S + + + F PS Sbjct: 725 MQTLRNGSGWGGSRSSWGGARSGQTSSRYSQSWDDDDFAPAFGTAGATAANKGKFVPSKF 784 Query: 763 DTKGKTNLESLLSDNQTFN 781 K + Sbjct: 785 GAKSAPASGEADASKTRAE 803 >gi|26249249|ref|NP_755289.1| exonuclease V subunit beta [Escherichia coli CFT073] gi|26109656|gb|AAN81859.1|AE016765_261 Exodeoxyribonuclease V beta chain [Escherichia coli CFT073] Length = 1183 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 126/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 520 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 637 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KKS+ + E Sbjct: 790 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGE 849 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSY 909 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 910 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ + D E+ Sbjct: 970 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1026 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123 >gi|330827780|ref|YP_004390732.1| DNA helicase II [Aeromonas veronii B565] gi|328802916|gb|AEB48115.1| DNA helicase II [Aeromonas veronii B565] Length = 723 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 108/723 (14%), Positives = 228/723 (31%), Gaps = 132/723 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + + Sbjct: 30 GAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVIGDGVRGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F ++ L ++ + + + ++ LK + R Sbjct: 90 FHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLIRRVLKALNLDEKHWAPRAVMGYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + Y+E ++ ++DF +L++ ++L + I Sbjct: 150 KDEGLRPGDIDLYGDPVTRTYQQIYETYQETCDRSGLVDFAELLLRAHELWLNKPH---I 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 +IL+DE QDT+ IQ+ +R L + + VGD+ QSIY + Sbjct: 207 LEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGN----------SGKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R Q I L ++RSTA+IL + V + G Sbjct: 257 RGAKIENIQRFLTDYQ--------GAETIRLEQNYRSTANILKAANSVIANNAERLGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + S + F+ + + AR + Sbjct: 307 -------------------ELW-------TEGAEGEPISLYAAFNEVDE-------ARFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 + + + D +L R + ++ Sbjct: 334 VGRLKDWKEKGGLL----------ADCAILYRSNAQSRVLEEALMQDAM----PYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IKD MA R I ++ DD SF ++ +P + + + R + +++ Sbjct: 380 LRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGDRTLEILRGNARDQGLNLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + N + + + I L H + + + +++ G Sbjct: 440 SAKALLNDKVLTGRAGNAVRGFVDLIDALEEQVSLLPLHQQADIAIQNSGLKAMYLAEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + ++ LDE + + ++ + + +L + L + + V++MT+ Sbjct: 500 EKSQARVENLDELVTACRQYQRPDELEDMSDLSAFLAHAALESGENQADEYADAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+V LV +F + Sbjct: 560 HSAKGLEFPLVLLVGVEEGMFPSQQST--------------------------------- 586 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 + EE RL YVGMTRA ++L IC + + + + + Sbjct: 587 -EESGRLEEERRLCYVGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIR 645 Query: 698 IKL 700 ++ Sbjct: 646 LRT 648 >gi|227888383|ref|ZP_04006188.1| exodeoxyribonuclease V [Escherichia coli 83972] gi|300980536|ref|ZP_07175062.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 45-1] gi|301049388|ref|ZP_07196352.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 185-1] gi|227834652|gb|EEJ45118.1| exodeoxyribonuclease V [Escherichia coli 83972] gi|300298830|gb|EFJ55215.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 185-1] gi|300409236|gb|EFJ92774.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 45-1] gi|307554813|gb|ADN47588.1| exodeoxyribonuclease V beta chain [Escherichia coli ABU 83972] Length = 1180 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 126/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KKS+ + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|148826204|ref|YP_001290957.1| DNA-dependent helicase II [Haemophilus influenzae PittEE] gi|229846218|ref|ZP_04466330.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1] gi|148716364|gb|ABQ98574.1| DNA helicase II [Haemophilus influenzae PittEE] gi|229811222|gb|EEP46939.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1] Length = 726 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y++ + ++DF +L+I +L +K+ + I + Q HIL+DE QDT+ IQ Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L + VGD+ QSIY + GA+ + + + + Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 K I L ++RSTA+IL +++ + + G + LW Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 S F+ L + A+ +A I + + Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + +I +I + IKD +A R I +++ Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DD +F ++ +P + + + R T+++ +Q A + Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541 + I+ L ++ + + G + I+ L+E + T + Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + + EL + L ++ H + V +MT+H+AKGLE P VF+V +F Sbjct: 526 DDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 612 KLTISYAESRR 622 >gi|315103757|gb|EFT75733.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2] Length = 1071 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 149/997 (14%), Positives = 295/997 (29%), Gaps = 139/997 (13%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSS 71 + L + +NK + G I + L A + + Sbjct: 135 AARAYQLAAEVIMGLNKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQ 194 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 L + T+ + D+ + L + + + Sbjct: 195 MLL--------DAPTKRGGDRYADIDKWLSRVDEREELL--------------------- 225 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ KK+ +++F D ++ L+ + ++ +L+DE QDTS Sbjct: 226 DLVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSA 282 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q +V+ +L F + H + AVGD Q+IY + GA +L R + Sbjct: 283 QADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---E 336 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 G ++ L + R I+ + ++ +R S + Sbjct: 337 GTPAQVLSLATNRRCADQIINAAN--------------VASEELRQTLSSAAESDDHDPA 382 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q E ++ + A + TI Sbjct: 383 GDRAEVAVGQPLIAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------A 434 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + D +LVR+ D + + V + L I ++A R ++ + Sbjct: 435 RWSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRLLVDR 490 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFAN 475 +DD + +L +P S DD+ + + + + + + Sbjct: 491 QDDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRP 550 Query: 476 CGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 G + Q +K + I Q SP D I + + D L Sbjct: 551 GGHERLQCAVKRVCAEIVEVDAHQGDSPDDLVLRIEAITGLIDDIAADDPHRSAARRDHL 610 Query: 530 DEFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLES 585 D N ++ ++ +++ L + RA + + + V + TVH AKGLE Sbjct: 611 DALWNAIREVRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEW 670 Query: 586 PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 P+V + D VF ++PS I P S S + + + + Sbjct: 671 PLVIIPDMAQGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKE 730 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERV 695 S E RL YV +TRA ++L++ H K S Y DM+ + + Sbjct: 731 DSQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGER 789 Query: 696 K--------KIKLTNSINKDEWIAYEWSTHHPENTPLER------EETIKQLMDEQKIPK 741 + + S P R + +K + Sbjct: 790 PDNVIQAGTPWPVFADVGHGLIDNASRSVDDPGQADRVRVWWTDADALLKDARRHIDLQD 849 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800 ++ P + ++ L+ + + ++ G H+ + Q + Sbjct: 850 EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 909 Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINC 857 + + +R L + + A ++ ++V Sbjct: 910 LFDAEEVAELDEENTTQEAVAAEPSGAESRALRS--LCQAFEESRWAGATVLAVEKSFVM 967 Query: 858 PKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 ++ GR+D + + + ++KT + QLSIY + Sbjct: 968 TIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQA 1019 Query: 915 YPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 + + +V + A I T Sbjct: 1020 RGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILT 1056 >gi|13471509|ref|NP_103075.1| DNA helicase II [Mesorhizobium loti MAFF303099] gi|14022251|dbj|BAB48861.1| DNA helicase II [Mesorhizobium loti MAFF303099] Length = 817 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 109/550 (19%), Positives = 178/550 (32%), Gaps = 113/550 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E + DF DL+ + + + + + +IL+DE QDT+ Sbjct: 182 RELYKAYQERLQTLNACDFGDLLCHPIRIFRANPD---VLKDYHRRFKYILVDEYQDTNT 238 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + + VGD+ QSIY + GAE +LR + Sbjct: 239 AQYMWLRLLAQRAEG-----RATVNICCVGDDDQSIYGWRGAEVDNILRFDKDFP----- 288 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +II L ++RSTA IL + + E G + + Sbjct: 289 ---GATIIRLERNYRSTAHILGAASHLIAHNEGRFGKTLFTDR----------------- 328 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + + +DS + AR I TI Sbjct: 329 ---------NDPEDGKVNVHAAWDSEEE-------ARAIGETIEAYQRQKH--------- 363 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D+ +LVR L ++ + + I+D +A R + + Sbjct: 364 -NLNDMAILVRASFQMRAFEDRFITL----GLNYRVIGGPRFYERMEIRDALAFFRVVAN 418 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ P E I +I T R + E + + + Sbjct: 419 SGDDLAFERIVNVPKRGLGEATIRQIHDTARALRIPMLEAAGNLAESDELKPKPRAALRE 478 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 V + + IL + + E ++ L E + E Sbjct: 479 VAANFERWQKALETKPHTELAETILEESGYTDMWKNDRSAEAPGRLENLKELIRSMEEYE 538 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L S LE + +A + V IMT+H+AKGLE VFL +F H Sbjct: 539 S--------LRSFLEHVALVMDAEQNAGQDAVSIMTLHSAKGLEFETVFLPGWEEGLFPH 590 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + +S EE RL YVG+TRA Sbjct: 591 QR--------------------------------ALDEGGRSGLEEERRLAYVGLTRAKK 618 Query: 661 QLIICKHSNT 670 L I SN Sbjct: 619 NLHIWFVSNR 628 >gi|56414941|ref|YP_152016.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363869|ref|YP_002143506.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129198|gb|AAV78704.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095346|emb|CAR60904.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1181 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 125/874 (14%), Positives = 270/874 (30%), Gaps = 123/874 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + +TV E + + V+ + L S + +L G ++ Sbjct: 634 DENAWDTVVEEFDGYRQIWHK--RGVMPMLRAL------MSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + ++ + + Sbjct: 740 TIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAEES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSF 689 I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 787 IALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGE 846 Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 D + + ++D +T + E + + + Sbjct: 847 PMDAAGFRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + G +H L + + Sbjct: 907 SGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----S 850 + + L ++ + N ++ + E+ Sbjct: 967 PIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLP 1026 Query: 851 VSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHH 888 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1027 IAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWL 1086 Query: 889 VPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1087 GEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|159039726|ref|YP_001538979.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205] gi|157918561|gb|ABV99988.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205] Length = 794 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 95/592 (16%), Positives = 182/592 (30%), Gaps = 118/592 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 Y+ ++ LDF+DLI+ T LL+ + + H+L+DE QD Sbjct: 195 RALAEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAETYRRRFRHVLVDEYQD 251 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +I+ L P L VGD QSIY+F GA + +L +R Sbjct: 252 TNHAQYVLIKELVSG-----TAGLDPAELCVVGDADQSIYAFRGATIRNILEFERDF--- 303 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL + V + + S Sbjct: 304 -----TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS---------------- 342 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 ++ + + + A +A I ++ Sbjct: 343 -----------EAGSGDPIVGYVA--------DTEHTEADWVAREIDRLVDDGDT----- 378 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D+ V R + + + + + ++D +A R Sbjct: 379 ----RPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLRA 430 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------SK 480 +++++D +S +L +P + + + + A + Sbjct: 431 LVNEDDTVSLRRVLNTPRRGIGDRAEACVEALASRDRISFGAALRRAKEAPGISTRAANG 490 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 + + +A+ +P + ++L + + +D L E ++ Sbjct: 491 IADFVALLDGAREVAENSAPEEVLEVLLNRSGYLMELEESLDPQDAGRVDNLQELVSVAR 550 Query: 538 RN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 + +++ + + L + + V +MT+HTAKGLE PV Sbjct: 551 EYTERVEALGAEGERATVAGFLEQVALVADADQVPADDPEHQGVVTLMTLHTAKGLEFPV 610 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VFL VF H EE Sbjct: 611 VFLTGMEDGVFPHARTFG----------------------------------DNHELEEE 636 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 RL YVG+TRA +L + + S + + + R ++ + Sbjct: 637 RRLAYVGITRARQRLYLSRAITRSAWGQPAYNAPSRFLAELPEELVRWERTE 688 >gi|323526768|ref|YP_004228921.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] gi|323383770|gb|ADX55861.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] Length = 787 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 118/724 (16%), Positives = 215/724 (29%), Gaps = 168/724 (23%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ LI + W + + S ++ + L Sbjct: 28 GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + T + L + L K Q Sbjct: 88 FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ K +T L Y++ ++ V+DF +L++ +LL +R Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGQTNA----------IFAVGDDDQSIYAFR 254 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + R +I+L ++RS IL +++ + G + Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + ++ + A I Sbjct: 307 TD---------AGHGEPVRVY--------------------------ESATDTQEAGWIV 331 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +I T T +I VL R + I + I+ Sbjct: 332 EEIKALISTGT----------SRSEIAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + +K +A R I + DD +F ++ P I ++ R ++ Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAA 437 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 I A S I ++ Q S + ++ A + + R G + ++ Sbjct: 438 IPYVAGKAGSSLSAFANLIGKMRAETQQMSLPETVEYVVRASGLADFYQNEREGQDRLEN 497 Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543 L E +N Sbjct: 498 LQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTVVLDAPGIADPAQ 557 Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++ L L A V++MTVH AKGLE VF+ +F H+ Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ EE RL+YV +TRA ++ Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643 Query: 662 LIIC 665 L + Sbjct: 644 LYLS 647 >gi|253698715|ref|YP_003019904.1| UvrD/REP helicase [Geobacter sp. M21] gi|251773565|gb|ACT16146.1| UvrD/REP helicase [Geobacter sp. M21] Length = 731 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 106/736 (14%), Positives = 223/736 (30%), Gaps = 145/736 (19%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQTLQQASQTQCIEERFS 67 + +++ L E G P K A +++ + Sbjct: 22 LLVLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKAAGEMRERLAHMLGDGELP 81 Query: 68 LLSSFFLTQKFTPQKNII------------TQEINKKSPDLKEKL---------KKSQDE 106 L+S+F T + I ++ K D +L K Sbjct: 82 LISTFHSTCARILRSEIRHLGYDSNFAIYDDKDCEKLLKDCATELNLDEKRYPAKALAGA 141 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + +++ + + Y+E K+ +DF DL++ LL++ Sbjct: 142 LDEFKNQGLAPDQVPADSPYQATLARVYRCYQERLKRCNAVDFGDLLLLAVQLLEQH--- 198 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 +R K Q I++DE QDT+ +Q+ +++ L + + L VGD+ QSI Sbjct: 199 REVRDKYLQRYRWIMVDEYQDTNPVQYRLVQLLAGE----------RKNLCVVGDDDQSI 248 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L ++ +++L ++RS+ IL V + Sbjct: 249 YGWRGADIRNILEFEKDFP--------GVKVVKLEQNYRSSKTILDGAWNVVQKNRGRKP 300 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + ++ ++ + + + A Sbjct: 301 KR---------------------LW-------TDNPDGERIAYRTLPNEWEE-------A 325 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 R + + ++ V R + I I+ Sbjct: 326 RTVCRETERFLDEGGDL----------SEVAVFYRTNAQSRAIEDAM----VSAGIAYHM 371 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465 L +KD++A + + + DD++ ++ +P + ++ + Sbjct: 372 VGGVRFYARLEVKDILAYLKVLDNPSDDVALKRIINTPPRGIGNTTVQRLSEFAAEKGIP 431 Query: 466 VYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 +Y+ + + A K + I A+ + + I+ + + Sbjct: 432 LYDAMLEGAFGPLLSVAAKGKVAAFAQEIDGYKEKAEQMPLSELTSTIIYDSGYFARLKA 491 Query: 520 ---RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 E I+ L E + E L + + ++ +++ +M Sbjct: 492 LGSDEAQERIENLQELVTAMQAFENGPGEKGLADFLEQVALVS-DLEQEGDGKKASATLM 550 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P+VF++ ++F H + Sbjct: 551 TLHSAKGLEFPLVFIIGMEERLFPH----------------------------------V 576 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + EE RL YVGMTRA +L + + + D Sbjct: 577 RALEDPAQMEEERRLCYVGMTRAKKRLFLLNVRRRHIFGQEQMNPPARFIADIPRELLDT 636 Query: 696 KKIKLTNSINKDEWIA 711 S ++ Sbjct: 637 GDNWQEPSRQREFPSH 652 >gi|19703927|ref|NP_603489.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714099|gb|AAL94788.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 735 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 106/546 (19%), Positives = 181/546 (33%), Gaps = 117/546 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y A ++ +DF D+++NT LL+K + I K+ + +I+IDE QDT+ + Sbjct: 167 EVYDKYNRALLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 222 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I + L VGDE QSIY F GA +L + Sbjct: 223 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYNN----- 267 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I++L ++RST IL +++ ++++ LW Sbjct: 268 ---AKIVKLEENYRSTTIILDAANELIKNNKSSKDKK---------------------LW 303 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + + S RI I + Sbjct: 304 -------TQNGKGDLIKVLACDNGRDEVS-------RIIEFIRENHQNG----------V 339 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +D+ +L R + + Y I IKD++A I++ Sbjct: 340 AYRDMTILYRTNAQSRIFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 395 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484 +D+L+ ++ P E I KI R + E + G K + Sbjct: 396 QDELNLQRIINVPKRKVGEKGIEKIITYARENNLNLLEALSHIKEISGLTVVGKEKLLEM 455 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542 I EL ++ + ++ K + I+ +DEF N L E Sbjct: 456 YDIIKELKDLSYTETTSYIVQTLIDKIKYIDYIKDNYDDAEARIENIDEFKNSILELE-- 513 Query: 543 SYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L LE + V++MT+H +KGLE P+VFLV +++F Sbjct: 514 NVVGELRLNEYLENVSLISATDNLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGT 573 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA + Sbjct: 574 ----------------------------------RAMFDEKEMEEERRLCYVALTRAEKK 599 Query: 662 LIICKH 667 L + Sbjct: 600 LYLSHA 605 >gi|330444888|ref|ZP_08308543.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489198|dbj|GAA03040.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 723 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 101/549 (18%), Positives = 177/549 (32%), Gaps = 116/549 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + + Y+EA + ++DF +L++ + +LL+ IR HIL+DE QDT+ I Sbjct: 172 RIYSAYQEACDRAGMVDFAELLLRSYELLRDN---KHIREHYQARFKHILVDEFQDTNSI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R + + VGD+ QSIY + GA+ + + R Sbjct: 229 QFAWLRLMAG----------PDCHVMIVGDDDQSIYGWRGAKVENIQRFLNEF------- 271 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + S I L ++RST +IL +++ + G LW Sbjct: 272 -NEASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S S F+ L + AR I Sbjct: 310 -------TEGGEGEPISLYSAFNELDE-------ARFAVGKIKEWRDQGGSL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + L R + ++ + + IKD ++ R I ++ Sbjct: 348 --NETAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLISNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484 DD SF ++ +P + + I R T+++ + + Sbjct: 402 NDDASFERVVNTPTRGLGDRTLETIRLAARDRGLTMWQASIALLEEQVLAGRAGNALRRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE- 540 I+ I+ L + ++ R + G + + L+E + T + E Sbjct: 462 IELINALEDDTAELPMYQQTDEVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFEI 521 Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + + V++MT+H+AKGLE PVVF+V +F Sbjct: 522 PEEAEDMSPLAAFLAHAALEAGDGQADDFEDAVQLMTMHSAKGLEFPVVFMVGVEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVGMTRA Sbjct: 582 SSRTT----------------------------------EEVGRLEEERRLCYVGMTRAM 607 Query: 660 DQLIICKHS 668 +L I Sbjct: 608 QKLYITYAE 616 >gi|304390802|ref|ZP_07372754.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325685|gb|EFL92931.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 877 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 107/707 (15%), Positives = 201/707 (28%), Gaps = 144/707 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L ++ + ++ ++L + Sbjct: 85 GAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLVGNAAKYMWVST 144 Query: 66 FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110 F L T+ F+ T+ + + + K + + Sbjct: 145 FHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIKGRGLDPKRFPPKSFAAKISQA 204 Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ T ++F L + Y++ ++ DF+DLI +T L K Sbjct: 205 KNELITPEVFALGAGVDKMSQLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPD-- 262 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + + H+L+DE QDT+ Q+E+IR LT SP L VGD QSIY Sbjct: 263 -ILARYRAKFRHVLVDEYQDTNPAQYELIRLLT---VGAAGDAQSPAELTVVGDSDQSIY 318 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA + + + + + L ++RST IL+V + + S E + Sbjct: 319 AFRGATIRNIEEFESDFP--------GATTVYLEQNYRSTGTILSVANAIISENEGRRKK 370 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + ++ L + A Sbjct: 371 NLWTDAGQGVQAV-----------------------------------LYAADTDRDEAA 395 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I + + + + V R + + + I Sbjct: 396 FIVRELQKLRQEGS----------SWDEFAVFYRTNAQSRSLEEML----TREGIPYRVV 441 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---------- 457 D IKD +A + DD + + +L P + + I Sbjct: 442 GGTKFYDRREIKDAIAYLCAAANPADDGNLLRVLNEPKRGLGDKAVQTIREVSLRENLDF 501 Query: 458 -TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQ 515 + + + + + + + + A + L Sbjct: 502 GQALRQFLPGGTHHGDLSAKASAGIAEFVGVLDAMRALDAASAPLDEILDTALEDSGYLP 561 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANH-- 569 + + ++ L E N + + L + + + + +A Sbjct: 562 KLRKSNDPQDDARVENLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAAQPE 621 Query: 570 -----------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 EV +MTVHTAKGLE VF+ +F H Sbjct: 622 RPADPAHPAAPPEVTLMTVHTAKGLEFNTVFVTGMEDGLFPHSRSL-------------- 667 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 E RL YV +TRA +L + Sbjct: 668 --------------------ENPQDIAEERRLAYVAVTRARQRLYLT 694 >gi|213424879|ref|ZP_03357629.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 923 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 48 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 106 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 107 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 158 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 159 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 208 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 209 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 258 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 259 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 316 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 317 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 373 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 374 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 425 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 426 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 479 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 480 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 526 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 527 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 586 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 587 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 646 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 647 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 706 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 707 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 766 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 767 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 826 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 827 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 862 >gi|146298462|ref|YP_001193053.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] gi|146152880|gb|ABQ03734.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] Length = 1052 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 142/919 (15%), Positives = 298/919 (32%), Gaps = 119/919 (12%) Query: 32 NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS------LLSSFFLTQKFTPQKNII 85 K ++L E + + L + + FS L S KF P+ Sbjct: 219 KKMLALCKELESENEQFAIEALSLIEKNGIDLKSFSRGTFPNHLESIR-DGKFNPRNKTF 277 Query: 86 ----------TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 T + ++ L + + K ++ + YK F + L+L ++ Sbjct: 278 HEFDDIAINKTAKDKSLIENIIPDLLQILSKIYKNFEKRDFYKAFLKNITPLSLLNTVSN 337 Query: 136 HYEEAKKKNCVLD---FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + + + VL F +I + +I ++ + H IDE QDTS +Q Sbjct: 338 ELAKIQSEQNVLSISEFNAIIHREIQ----NQPAPFIYERLGERYRHFFIDEFQDTSEMQ 393 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 W+ + L ++ G + + TL VGD KQSIY + G + ++ + + Sbjct: 394 WQNLIPLIDNSLSGLDDLGNKGTLMIVGDPKQSIYRWRGGKAEQFIELSKDV---NPFNN 450 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH--RSSRIGQVGTVQL 310 +I L ++RS ++++ + F + + + H +++ + G V + Sbjct: 451 PDKAIKHLNTNYRSYSEVIEFNNAFFKLISSEFSNEDYKDLYENHSFQNTNSKKGGYVNI 510 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + + + + ++S +LA TI +I Sbjct: 511 SFLPIIEKSDFADEE---------EVIEKSDLYVLATL--NTIQKVIREG---------- 549 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KDI++L RKR I I ++ ++ ++ + ++ ++ L R++ + Sbjct: 550 FEYKDIVILTRKRDQGIAIANYLTE----QNIPLLSSETLMIKNATEVRLIINLLRYLNN 605 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 D S L + + + + + + K+ Sbjct: 606 NADLESKANFL--------HFLAENKEIELPVHDFIAQGMAQKFEEDFEKWLLTFDVSLS 657 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550 + S ++ +I+ +E + FL+ L + + + + + Sbjct: 658 F-ENVRKKSLYEAVEIIISKFV--------LPSEGNAYVQFFLDIVLERDIRNQAGVADF 708 Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 +S ++ +N VRIMT+H +KGLE PVV + K Sbjct: 709 LSFWDKNSEKFSIPSPEGNNAVRIMTIHKSKGLEFPVVIMPFAEEDYNRKPKDKLWLDTE 768 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLI--KHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 + + S S I K+ + +LYV +TRA +QL + S Sbjct: 769 ETDLGVPKALIDNSSAVEGFGESASIVFNLKKQEELLDNINVLYVALTRAEEQLYVISQS 828 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + + KL ++ T Sbjct: 829 LKERKDGEMPNNMASYFIKYLMHKGIYDSEKLEYEFGNKIRLSKSEKTVDL--------- 879 Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788 +K +LNP I + L + + G I+H+ Sbjct: 880 ------------------VKTIPIVKEVLNPKNIKIAQREALMWGTHQQEAISYGNIVHE 921 Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 +L + + + E +L ++ ++ +P ++ + Sbjct: 922 ILAFVKDKSDVDL--AVVKALENGLITIDQSEM--VLKTLKEIVNHPELSICFDGNHK-- 975 Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 V I I+ + D++ ++ ++ +YKT + Q+ Y Sbjct: 976 VLNEQTIVQKAGKIL---KPDRVVLTNNKEAYLLDYKTG--------AFNSKYQKQIQEY 1024 Query: 908 EKILKDSYPNKSLVCLLIY 926 + ++D K L LIY Sbjct: 1025 QDAIEDL-GYKVLKRALIY 1042 >gi|331684463|ref|ZP_08385055.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H299] gi|331078078|gb|EGI49284.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H299] Length = 1180 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFKAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDAITAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVDEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDSLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|218690946|ref|YP_002399158.1| exonuclease V subunit beta [Escherichia coli ED1a] gi|218428510|emb|CAR09291.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli ED1a] Length = 1180 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 131/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S ++ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|89092193|ref|ZP_01165147.1| DNA helicase II [Oceanospirillum sp. MED92] gi|89083281|gb|EAR62499.1| DNA helicase II [Oceanospirillum sp. MED92] Length = 737 Score = 276 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 96/583 (16%), Positives = 187/583 (32%), Gaps = 119/583 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+A ++ ++DF +L++ + +L + ++ + + +IL+DE QDT+ I Sbjct: 172 AMYEAYEQACERGGMIDFGELLLRSLELFRDKN--PALLEHYQERFRYILVDEFQDTNTI 229 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ L + L AVGD+ QSIY + GA+ + + Sbjct: 230 QYGWLQLLCG----------GQQKLMAVGDDDQSIYGWRGAKIENIQNLSTHFP------ 273 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I+L ++RST IL ++V + G Sbjct: 274 --GVETIKLEQNYRSTETILRAANEVIRNNQGRLGKELH--------------------- 310 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 S + F+ + AR I I + Sbjct: 311 -------TESGEGDPISLYAAFNEQDE-------ARFIVDQIGKWSQEGNL--------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 K+ +L R + ++ + + L IK+ ++ R + ++ Sbjct: 348 -RKECAILYRSNAQSRVLEEAL----IRSGVPYRIYGGQRFYERLEIKNALSYLRLMNNR 402 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484 +DD S ++ P I I R + +++ + + Q Sbjct: 403 DDDTSMERVINVPTRGIGTRTIEIIREHARSQGISMWRASNEIVELKRLPARASNALQAF 462 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541 + I+++ + H+ ++ + G + + L+E + + Sbjct: 463 LDLINQMAQDTEDTLLHEQTEHVIQHSGLIEHHKKEKGEKAQSRIENLEELVTAAKQFNS 522 Query: 542 NSYSSLQE-----LISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 L E L + L+Q + V++MT+H+AKGLE P VFL Sbjct: 523 QWDEFLDEEFSSPLAAFLDQAALDAGDAQADEYQDSVQLMTLHSAKGLEFPQVFLAGVEE 582 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F HK + EE RL YVG+ Sbjct: 583 GLFPHKMS----------------------------------IEEPGRLEEERRLCYVGI 608 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 TRA +L I + + + + ++ Sbjct: 609 TRAMQKLFITYAESRRLHGQDTYNRPSRFISEIPSELMEEVRL 651 >gi|301029031|ref|ZP_07192184.1| putative DNA helicase II [Escherichia coli MS 196-1] gi|299877994|gb|EFI86205.1| putative DNA helicase II [Escherichia coli MS 196-1] Length = 555 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 6 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 62 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 63 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 107 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 108 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 143 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 144 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 182 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 183 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 235 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 236 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 295 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 296 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 355 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 356 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 415 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 416 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 441 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 442 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 484 >gi|110642987|ref|YP_670717.1| exonuclease V subunit beta [Escherichia coli 536] gi|110344579|gb|ABG70816.1| exodeoxyribonuclease V beta chain [Escherichia coli 536] Length = 1180 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLWALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + + L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|326693832|ref|ZP_08230837.1| ATP-dependent DNA helicase PcrA [Leuconostoc argentinum KCTC 3773] Length = 748 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 119/768 (15%), Positives = 231/768 (30%), Gaps = 149/768 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64 G ++ L ++ + V + ++ L + Sbjct: 30 GAGSGKTRVLTHRIAHLVKDLNVMPWRILAITFTNKAAKEMRERIGALLSEDVARDIWVS 89 Query: 65 RFSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR-------- 113 F L+ L + +N + + + +K + + + R Sbjct: 90 TFHALAVRILRRDGENIGLSRNFTIIDTSAQRTLMKRVINDLNLDTNQYEPRTVLGMISN 149 Query: 114 ------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ A + A Y+ K+ +DF+DLI+ T DL + + Sbjct: 150 AKNDMLRPKDYAQQADNAFQETVAEIYAAYQAELKRAQSVDFDDLIMLTIDLFQSS---S 206 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 + + + +++ +DE QDT+ Q+ ++ L + + L VGD QSIY Sbjct: 207 DVLARYQNQFDYLHVDEYQDTNDAQYTIVNMLAQ----------RSQNLAVVGDADQSIY 256 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 + GA +L ++ I L ++RST +IL + V + Sbjct: 257 GWRGANMNNILNFEKDYPN--------AQTILLEQNYRSTQNILDAANAVINNNNERLPK 308 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + LW + ++ S A Sbjct: 309 N---------------------LW-------TQNGQGDKITYYRA-------QSEHDEAN 333 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I I M + + D VL R + + + Sbjct: 334 FILANIQKMRAE---------KQMAYSDFAVLYRTNAQSRNVEEAL----VKANMPYTMV 380 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467 + I D+MA + + + D+ +F ++ P I ++ + Y Sbjct: 381 GGHKFYERKEILDIMAYMQLVTNPNDNAAFERIVNEPKRGLGATSITRLRELANRLNVSY 440 Query: 468 -------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 E + SKF + +HEL A+F + + +++ RQ + Sbjct: 441 MTAIESIELAPAISTKATSKFLEFAEMMHELRQQAEFLNVTELAEIVMTRSGYRQMLAEK 500 Query: 521 FGNE---VIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEV 572 + ++ L+EFL+ T + + ++ + L V Sbjct: 501 NDPDSQARLENLEEFLSVTKEFDAKYQPDDPEAIDPMTDFLGTTALMSDLDDFEEGDGAV 560 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFLV +F Sbjct: 561 TLMTLHAAKGLEFPVVFLVGMEEGIFPLSRAL---------------------------- 592 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 + + EE RL YVG+TRA +L + + ++Y ++ Sbjct: 593 ------MAEDQLEEERRLAYVGITRAMKKLFLT-------------NAFSRLLYGRTQSN 633 Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 E + I + + + P +R+ Q + P Sbjct: 634 EASRFINEISPALLETEYGQNTRVTPRRDLPFDRKNQHAQATTYRATP 681 >gi|300920325|ref|ZP_07136763.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 115-1] gi|300412650|gb|EFJ95960.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 115-1] Length = 1180 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 131/971 (13%), Positives = 296/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S ++ S Sbjct: 215 DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDVVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFVTNFRVQEQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 720 ENTPLER------EETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + + E + + + D+ ++ + + Sbjct: 873 GDKQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|197287153|ref|YP_002153025.1| DNA-dependent helicase II [Proteus mirabilis HI4320] gi|194684640|emb|CAR46555.1| DNA helicase II [Proteus mirabilis HI4320] Length = 718 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 117/724 (16%), Positives = 220/724 (30%), Gaps = 132/724 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L Q S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + + ++ +K + + R Sbjct: 90 FHSLAHRLLRAHYLDAGLPQDFQIIDSDDQYRLIRRIVKSMALDDKQWPPRQGMWYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + T + Y+EA + ++DF +L++ ++L + I Sbjct: 150 KDEGLRPQHIQTYGNPVETTWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 +IL+DE QDT+ IQ+ IR L + VGD+ QSIY + Sbjct: 207 LEHYQHRFTNILVDEFQDTNRIQYAWIRMLAGQ----------TGKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + I L ++RST++IL + + + + G + Sbjct: 257 RGAQVENIQNFLNEFP--------GAETIRLEQNYRSTSNILKAANALIANNSDRLGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TEGAEGEPISLYCAFNDLDE-------ARYV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D +L R + ++ Sbjct: 334 VGRIKRWHEEGGAL----------ADCAILYRSNAQSRIMEEAL----LQANKPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD ++ R ++ DD SF ++ +P + + + R T++E Sbjct: 380 QRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIGDRTLDVVRQVARDNQITLWE 439 Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + A I+ ++ I L + H I+ + + G Sbjct: 440 SALQVIEHKMLAGRAIAAIARFLELIETLANETADMPLHVQTDRIIRDSGLKAMYEQEKG 499 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTV 577 + + L+E + T + Q+ L L + L A + V++MT+ Sbjct: 500 EKAQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAALESGEGQADAYQDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE VF+V +F + Sbjct: 560 HSAKGLEFSQVFIVGVEEGMFPSQMSLDEGG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA +L + N K + + + Sbjct: 591 -----RLEEERRLAYVGVTRAMKKLTLTYAENRRLYGKEVSHRPSRFIGELPKECVEEVR 645 Query: 698 IKLT 701 ++ T Sbjct: 646 LRAT 649 >gi|307700275|ref|ZP_07637315.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris FB024-16] gi|307614486|gb|EFN93715.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris FB024-16] Length = 900 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 111/730 (15%), Positives = 205/730 (28%), Gaps = 164/730 (22%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L +V + ++ +TL + Sbjct: 78 GAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERVETLVGNAAKYMWVST 137 Query: 66 F---------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110 F + + +T+ F+ T+ + + + K Sbjct: 138 FHSSCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNA 197 Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ F A L + A Y++ ++ DF+DLI L ++ Sbjct: 198 KNELVEPATFAEMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPE-- 255 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRTLFAVGDE 222 I K + ++L+DE QDT+ Q++++R L D G L VGD Sbjct: 256 -ILAKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS 314 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY+F GA + + ++ + + L ++RST IL+V + + S Sbjct: 315 DQSIYAFRGATIRNIEEFEQDFP--------GATTVYLEQNYRSTGTILSVANAIISENS 366 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 + LW ++ P+ + + + Sbjct: 367 GRHKKN---------------------LW------TEAGDGPKAIMFAA--------DTE 391 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 A I I + T + V R + + + + Sbjct: 392 RDEAAFIIREIRDAHTAGTP----------WDEFAVFYRTNSQSRALEEML----TRENV 437 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462 D IKD +A + DD + + +L P + KI Sbjct: 438 PYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLGDVAQTKIREAARL 497 Query: 463 TETVYEYIQK-----------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGA 510 + T + + + + ++ + L + + + L Sbjct: 498 SGTSFGQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDEAGAPLDEILGTALED 557 Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS 566 + + + I+ L E + S L + + + T + Sbjct: 558 SGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFLERISLVADTDQLPDQ 617 Query: 567 ANHN-------------------------------EVRIMTVHTAKGLESPVVFLVDTGS 595 + EV +MTVHTAKGLE VF+ Sbjct: 618 GSKEVAAKEMAPREPETNVSEASGDHPNPAPETKPEVTLMTVHTAKGLEFNTVFVTGMED 677 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F H EE RL YV + Sbjct: 678 GLFPHSRSLDDP----------------------------------EAIEEERRLAYVAV 703 Query: 656 TRASDQLIIC 665 TRA QL + Sbjct: 704 TRARRQLYLT 713 >gi|262040875|ref|ZP_06014101.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041764|gb|EEW42809.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 720 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483 + DD +F ++ +P + + + R T+++ ++ A S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETTDMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTS 671 +L + Sbjct: 607 MQKLTLTYAETRR 619 >gi|325860071|ref|ZP_08173197.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A] gi|325482356|gb|EGC85363.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A] Length = 842 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 105/579 (18%), Positives = 171/579 (29%), Gaps = 120/579 (20%) Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + YE ++ +DF+D+++ T L + Sbjct: 160 ADEYAEDRAATERDRNARM-PAVHLIYKAYEARCRQANAMDFDDILLYTYLLFRDN---R 215 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 IR K Q+ +IL+DE QDT+ Q +I L E + R + VGD+ QSIY Sbjct: 216 EIREKYGQQFEYILVDEYQDTNYAQVNIISLLAE----------THRRICVVGDDYQSIY 265 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 SF GA +L + + +L ++RST I+ + + E Sbjct: 266 SFRGANIDNILDFRNKF--------TDARLFKLERNYRSTQFIVQAANSLMKHNE----- 312 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 I G L++ S + A Sbjct: 313 -----RQIPKEVYSKEAAGDKVLYKPCYSDRE-------------------------EAM 342 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A + + D + VL R + R I Sbjct: 343 AVAAELKRIRHGD---------SCDYDNFAVLYRTNAQSRPFEDEFR----KQGIPYKII 389 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE--- 464 IKD++A R + + +D+ +F ++ P + KI + Sbjct: 390 GGLSFYQRKEIKDIIAYFRLVANPDDEEAFRRVINYPARGIGNTTVQKIIACAQQHAVSL 449 Query: 465 -----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + EY ++K I I A ++ I+ S Sbjct: 450 WETILSPAEYGLDVNKGTLAKLSSFRMLISSFIKKAALTDAYELGCEIIEKSGVGADIRS 509 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANH-NE 571 E + L+EF++ +E L L++ + + Sbjct: 510 GNEPEDLARRENLEEFMSAMQGFVDTGREEGREENVYLADYLQEVALYTDADKEEDDVPK 569 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE P VF+V +F Sbjct: 570 VTLMTIHAAKGLEFPTVFVVGLEENIFPSPMSSGS------------------------- 604 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 K EE RLLYV +TRA I+ N Sbjct: 605 ---------KHGIEEERRLLYVAITRAERHCILTNAKNR 634 >gi|331658967|ref|ZP_08359909.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA206] gi|315295774|gb|EFU55091.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 16-3] gi|331053549|gb|EGI25578.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA206] Length = 1180 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 297/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S ++ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KKS+ + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|19552002|ref|NP_600004.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|62389665|ref|YP_225067.1| DNA helicase II protein [Corynebacterium glutamicum ATCC 13032] gi|41325000|emb|CAF19481.1| PROBABLE DNA HELICASE II PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 1070 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 141/1025 (13%), Positives = 283/1025 (27%), Gaps = 156/1025 (15%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71 + L + S + T + + + ++ Sbjct: 115 TVSTYDSYAGTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTE 174 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-A 130 + L +++T E ++ D KL + RD N L Sbjct: 175 YLLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 234 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 L +E V+ F + + L + Y + +++DE QDTS Sbjct: 235 LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHP---QVGYSQRRRFRVVMLDEYQDTSH 291 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q ++ SL G + AVGD Q+IY + GA + + Sbjct: 292 SQRVLLSSLFGGTDPGLTVN-------AVGDPMQAIYGWRGATAANLENFVDDFPVIHLD 344 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + EL S+R+ ++LT+ + V G + T T++ R G Sbjct: 345 GKTRAPKNELTTSWRNPPEVLTLANAV---SREVLGSPDAPTRTVQPLQPREGAP----- 396 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + ++ A T + Sbjct: 397 -----------TGEVSLGWFGTAAQEREFVADEMVKHWNARE-----EKGTFTA------ 434 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 VLVRK++ + + I V L D I DL++L ++ Sbjct: 435 ------AVLVRKKRHSAPMAEEL----TKRGIPVEIVGLSGLLDIPEIADLISLATMLVR 484 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ------------------- 471 D+ + + +L P D+ ++ + + Sbjct: 485 PHDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSRERREKNPDPLAELDAIIEEAT 544 Query: 472 ---------------------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510 +F+ G+S+ + + + L + S D F I Sbjct: 545 AIEPEAVVGLADAVADLGEGDRFSEEGLSRLKRLATQLRYLRKYSLGRSVADIFADIETV 604 Query: 511 KKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----I 561 R + +SR LD+F + L EL+ E Sbjct: 605 FNIRTEVLSRQDPHADGAAGTVHLDKF---AEEVASHGGIGLPELLDYFELAKDQEEGLE 661 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDD 615 + + V+I+TVH AKGLE +V ++ + + K + + Sbjct: 662 PGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKASTWLKNVTMIPSSLRGDAG 721 Query: 616 PGIPIWIPQSKSRNNIVS----DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 G P + + +++ +EE +RL YVG+TR+ L++ + Sbjct: 722 TGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFYVGITRSERVLLVTGSALDE 781 Query: 672 NEKKSNQR----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 + K+ +W++ + + + Sbjct: 782 SGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAEGVFPQLLAADSSGADLVRG 841 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DTKGK 767 N E ++ + + S ++ P L + + + Sbjct: 842 PRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRELTATDLVSMKNNPEQFARR 901 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 N RG + H+ L+ R + + Sbjct: 902 MRRPVPFKPNTYAKRGTLFHQWLE--------DRFGSTALLDETELPGIDEDYSDDAFIE 953 Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887 L + + + + V + +I GR+D + + + ++KT Sbjct: 954 ----LRDAFLGSTWEN--RTPEFVEHPFEVTIGEHVIRGRMDAVFHTDGTWMVVDWKTGR 1007 Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFA 945 I QL++Y + + YV+ F + A Sbjct: 1008 TPTGPEMDAA---IIQLAVYRLAWARLKGLEPEEVRAAFHYVAHDHTFEPNDLPTQEELA 1064 Query: 946 EISTK 950 + ++ Sbjct: 1065 RLLSQ 1069 >gi|315498764|ref|YP_004087568.1| uvrd/rep helicase [Asticcacaulis excentricus CB 48] gi|315416776|gb|ADU13417.1| UvrD/REP helicase [Asticcacaulis excentricus CB 48] Length = 772 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 114/608 (18%), Positives = 198/608 (32%), Gaps = 120/608 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+E + DF DL+++T + + I + ++L+DE QDT++ Sbjct: 196 ELYAEYQERLRVLNACDFGDLLLHTLKIFSEH---TDILEHYHRRFKYVLVDEYQDTNIA 252 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R LT ++ R L VGD+ QSIY + GAE +L+ +R Sbjct: 253 QYLWLRILT----------NANRNLCCVGDDDQSIYGWRGAEVDNILKFERDYP------ 296 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RST IL+ + G + Sbjct: 297 --GAKVIRLERNYRSTQHILSAASGLIRANSARLGKTLF--------------------- 333 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q ++ +D + A+ +A I + Sbjct: 334 -------TDQQGGEKVRVQGLWDGAAE-------AQGVAEDIERLKREGRA--------- 370 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ VLVR L+ I V + I+D +A R I S+ Sbjct: 371 -YSDMAVLVRASFQMRAFEERFLMLQ----IPYVVVGGPRFFERAEIRDAIAYLRLIQSE 425 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQH------V 484 +DDL+F ++ P + + K + R ++V ++ + Sbjct: 426 DDDLAFERIVNVPKRGIGDATVQKLLMQARLAGQSVMAAVRDLVQTDELPARAKTPLIGF 485 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQN 542 ++ + + S ++L + G ID L E +N E Sbjct: 486 LRDYDRWVAALKSTSHDALLDMVLTESGYYDMQRADKTSGGTRIDNLKEMMNAMQDFEN- 544 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L + LE + N VRI T+H AKGLE PVVFL VF + Sbjct: 545 -------LEAYLEHVSLVMDLERDNGENSVRISTLHAAKGLEFPVVFLPGWEEGVFPSQR 597 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + EE RL YVG+TRA + Sbjct: 598 S--------------------------------MDENGLKGLEEERRLAYVGLTRAREIA 625 Query: 663 IICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + +N + + + + E + + + + ++ + + P + Sbjct: 626 RVSFVANRQVFGRWTSQIPSRFIDEMPIDHVEATSQTGYNQAGWQSQESRWDRAGYQPNH 685 Query: 722 TPLEREET 729 T E + Sbjct: 686 TKSEAKAE 693 >gi|50119935|ref|YP_049102.1| exonuclease V subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49610461|emb|CAG73906.1| exodeoxyribonuclease V beta chain [Pectobacterium atrosepticum SCRI1043] Length = 1208 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 130/870 (14%), Positives = 281/870 (32%), Gaps = 122/870 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 ++ +R + L + + E K++ L F+DL+ +D L++ Sbjct: 317 IFEVTERLLETPLSLRDLVIVRALSAIRDSVREEKRQRAELGFDDLLSRLDDALQQPS-G 375 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I + +IDE QDT Q+ + R+L L +GD KQ+I Sbjct: 376 EQLASAIRERYPVAMIDEFQDTDPQQYRIFRTLY--------VGQPQCGLLLIGDPKQAI 427 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ + + G+ + L ++RS+ ++ V+++F E++ Sbjct: 428 YAFRGADIFTYMHAR----------GEVAAHYTLGTNWRSSHQMVRGVNRLFERLEHSFI 477 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 ++ S+ G +V Q P + W + + + +A Sbjct: 478 FHNIPFLPVKPAESKRG----------LVFDVAGQPQPALQFWLTGEEPIGVGDYQQQMA 527 Query: 347 RRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 R+ A I + + + + +++A D+ VLVR R++ LI L Sbjct: 528 RQCAAQIRDWLAASQRNEAWLVTDDSRCLVKASDMSVLVRSRREASLIRDALSRLSIP-- 585 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + D++ L + +L+ E + + + + L + + + Sbjct: 586 -SVYLSNRDSVFTTPEASDILWLLQAVLAPEQERTLRSAMATALMGLDAEQVDALGQS-- 642 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 E + ++ + + L + S H +L + G ++ Sbjct: 643 ------ETAWDALVDEFAGYRALWRQRGVLPMLRALMSHHQLAENLLASADGERRITDIL 696 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + E L L +E L + I + + ++ + V+I+T+H Sbjct: 697 ------HIGELLQDASATLDSEHALVRWLSQQIVQPNPQAENQQLRLESDRHLVQIVTIH 750 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + + I D + Sbjct: 751 KSKGLEYPLVWLPFISNFRVQDQGIYHDRDSYQAVLDLQNN-------------EESQTL 797 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 ++ E RLLYV +TR+ + S +K + + + + Sbjct: 798 AEEERLAEDLRLLYVALTRSIYHCSVGVAPVQRSRKKDGSSDMHHSALGYLLQRGQESDV 857 Query: 698 IKLTNSINKD-----------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL--- 743 L + + + A W PE L+ +QL D ++ Sbjct: 858 ATLVSELKEMVGDGVALTPLQTTEAQRWQPDQPELAELQARHIERQLRDGWRVTSYSGLQ 917 Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNL--ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801 N + L+ I + + + + + + G +H L + + Sbjct: 918 QHGSANAQDLVPRLDIEAIGERQEVGETQLTPHTFPRGASPGTFLHSLFETLDFTQPVDD 977 Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCP 858 + + K + ++ N ++ + D +E+ I P Sbjct: 978 DWLAEQLQLQGFEAHWHPVLKAWMDTLLNTPFNERGITLSALDNSDKQAELQFYIPIKAP 1037 Query: 859 KK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 + ++ G ID + + ++ +YK++ P Sbjct: 1038 IQAAQLDRLAKHYDPLSAQCPSLSFQQVKGMLKGFIDLVFRWEGRYYLLDYKSNWLGPDA 1097 Query: 893 IEHIP---------YTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1098 SAYTQTAMAQSMAEHRYDLQYQLYSLALHR 1127 >gi|311281508|ref|YP_003943739.1| DNA helicase II [Enterobacter cloacae SCF1] gi|308750703|gb|ADO50455.1| DNA helicase II [Enterobacter cloacae SCF1] Length = 732 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 183 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 239 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 240 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 284 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 285 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 320 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 321 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 361 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 362 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 412 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483 + DD +F ++ +P + + + R T+++ ++ A S Q Sbjct: 413 RNDDAAFERVVNTPTRGIGDRTLDIVRQTSRDRQLTLWQSCRELLKEKALAGRAASALQR 472 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ + L H ++ + G I+ L+E + T + Sbjct: 473 FMELVDALAQETADMPLHVQTDRVIKDSGLWMMYEQEKGEKGQTRIENLEELVTATRQFS 532 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 533 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 592 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 593 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 618 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 619 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRAT 661 >gi|209519276|ref|ZP_03268077.1| UvrD/REP helicase [Burkholderia sp. H160] gi|209500288|gb|EEA00343.1| UvrD/REP helicase [Burkholderia sp. H160] Length = 797 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 118/724 (16%), Positives = 215/724 (29%), Gaps = 168/724 (23%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ LI + W + S ++ + L Sbjct: 38 GAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTNKAAREMMARLSALLPIDTRGMWIGT 97 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + T + L + L K Q Sbjct: 98 FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 157 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ K +T L Y++ ++ V+DF +L++ +LL +R Sbjct: 158 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 214 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F Sbjct: 215 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGQ----------HNAIFAVGDDDQSIYAFR 264 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + + R ++I+L ++RS IL +++ + G + Sbjct: 265 GANVGNMRDFEHEFKVR--------NLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 316 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + ++ S A I Sbjct: 317 TD---------AGHGEPVRVY--------------------------ESATDSQEAGWIV 341 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +I T + +I VL R + I + I+ Sbjct: 342 EEIRALINTG----------LSRSEIAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGL 387 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + +K +A R I + DD +F ++ P + ++ R ++ Sbjct: 388 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSLEQLADAARLYNCSMAAA 447 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 I A S + ++ Q S + ++ A + + R G E ++ Sbjct: 448 IPYVAGKAGSSLAAFANLVGKMRADTQQMSLPETVEYVVRASGLADFYQNEREGQERLEN 507 Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549 L E +N L Sbjct: 508 LQELVNAAAAFVSEEGYGLDTPARSIPLRPGASAAPELAVATNDPNTVVLDAPDIADPAQ 567 Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L L A V++MTVH AKGLE VF+ +F H+ Sbjct: 568 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 627 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ EE RL+YV +TRA ++ Sbjct: 628 NS----------------------------------AMEADGLEEERRLMYVAITRAKER 653 Query: 662 LIIC 665 L + Sbjct: 654 LYLS 657 >gi|152972801|ref|YP_001337947.1| DNA-dependent helicase II [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329997488|ref|ZP_08302790.1| DNA helicase II [Klebsiella sp. MS 92-3] gi|150957650|gb|ABR79680.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328539056|gb|EGF65095.1| DNA helicase II [Klebsiella sp. MS 92-3] Length = 720 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 349 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 +L R + ++ + + IKD ++ R I + Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483 + DD +F ++ +P + + + R T+++ ++ A S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETTDMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTS 671 +L + Sbjct: 607 MQKLTLTYAETRR 619 >gi|293406309|ref|ZP_06650235.1| recB [Escherichia coli FVEC1412] gi|298382045|ref|ZP_06991642.1| exodeoxyribonuclease V beta subunit [Escherichia coli FVEC1302] gi|291426315|gb|EFE99347.1| recB [Escherichia coli FVEC1412] gi|298277185|gb|EFI18701.1| exodeoxyribonuclease V beta subunit [Escherichia coli FVEC1302] Length = 1183 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 520 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 637 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 790 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDAITAELNARTLQRLPGDNWRVTSY 909 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 910 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 970 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1026 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123 >gi|71279005|ref|YP_266848.1| DNA-dependent helicase II [Colwellia psychrerythraea 34H] gi|71144745|gb|AAZ25218.1| DNA helicase II [Colwellia psychrerythraea 34H] Length = 724 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 104/557 (18%), Positives = 189/557 (33%), Gaps = 117/557 (21%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L + Y+E + ++DF +L++ ++L K + Q HIL+DE QD Sbjct: 168 ELFVKVYKAYQETCDRAGLVDFAELLLRAHELWLKNPA---LLDHYQQRFGHILVDEFQD 224 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ IQ+ + L + + VGD+ QSIY + GA+ + + R + Sbjct: 225 TNAIQYAWLTML----------GKARSKVMIVGDDDQSIYGWRGAKIENIERFLQEYD-- 272 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RSTA+IL +++ N G Sbjct: 273 ------DAKTIRLEQNYRSTANILKSANQLICNNNNRMGK-------------------- 306 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 +LW ++ S + F+ + + AR IA I Sbjct: 307 -ELW-------TDGEAGEKISIYTAFNEIDE-------ARFIAGRIKQWRDDGGKLD--- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +I +L R + L+ ++ + IKD +A R Sbjct: 349 -------EIAILYRSNAQSRLLEEAL----LQGQLPYRIYGGQRFFERQEIKDALAYMRL 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFANCGISKFQ---- 482 I +++DD +F ++ +P + R T+++ Q+ K + Sbjct: 398 INNRDDDAAFERVINTPTRGIGNQTLSLVRDAARGLEVTMWQACQQMLKAEQLKGRGAKT 457 Query: 483 --HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTL 537 I+ I +L I+ + + + G + I+ L+E + Sbjct: 458 ITAFIQLIEQLEDDTTNLDLDQQANFIINHSGLKAMYQAEKGERAAQRIENLNELVTACQ 517 Query: 538 RNEQNSYSSLQE--LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 E + + ++ L + L + V++MT+H+AKGLE P+VF+ Sbjct: 518 TFESDPELAEEQTPLTAFLTHAALESGESQADEFEAAVQLMTMHSAKGLEFPLVFIAGLE 577 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F + + EE RL YVG Sbjct: 578 EGMFPSQQSVEEIG----------------------------------RLEEERRLCYVG 603 Query: 655 MTRASDQLIICKHSNTS 671 MTRA +L +C + Sbjct: 604 MTRAMSKLYLCHAESRR 620 >gi|191171213|ref|ZP_03032763.1| exodeoxyribonuclease V, beta subunit [Escherichia coli F11] gi|300995845|ref|ZP_07181277.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 200-1] gi|190908513|gb|EDV68102.1| exodeoxyribonuclease V, beta subunit [Escherichia coli F11] gi|300304700|gb|EFJ59220.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 200-1] gi|324011667|gb|EGB80886.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 60-1] Length = 1180 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + + L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|282853719|ref|ZP_06263056.1| UvrD/REP helicase [Propionibacterium acnes J139] gi|282583172|gb|EFB88552.1| UvrD/REP helicase [Propionibacterium acnes J139] gi|314983238|gb|EFT27330.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3] gi|315090100|gb|EFT62076.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4] Length = 1071 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 149/998 (14%), Positives = 294/998 (29%), Gaps = 139/998 (13%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSS 71 + L + +NK + G I + L A + + Sbjct: 135 AARAYQLAAEVIMGLNKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQ 194 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 L + T+ + D+ + L + + + Sbjct: 195 MLL--------DAPTKRGGDRYADIDKWLSRVDEREELL--------------------- 225 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ KK+ +++F D ++ L+ + ++ +L+DE QDTS Sbjct: 226 DLVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSA 282 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q +V+ +L F + H + AVGD Q+IY + GA +L R + Sbjct: 283 QADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---E 336 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 G ++ L + R I+ + ++ +R S + Sbjct: 337 GTPAQVLSLATNRRCADQIINAAN--------------VASEELRQTLSSAAESDDHDPA 382 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q E ++ + A + TI Sbjct: 383 GDRAEVAVGQPLIAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------A 434 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + D +LVR+ D + + V + L I ++A R ++ + Sbjct: 435 RWSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRLLVDR 490 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFAN 475 +DD + +L +P S DD+ + + + + + + Sbjct: 491 QDDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRP 550 Query: 476 CGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 G + Q +K + I Q SP D I + + D L Sbjct: 551 GGHERLQCAVKRVCAEIVEVDAHQGDSPDDLVLRIEAITGLIDDIAADDPHRSAARRDHL 610 Query: 530 DEFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLES 585 D N ++ ++ +++ L + RA + + + V + TVH AKGLE Sbjct: 611 DALWNAIREVRRSDPTMTITGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEW 670 Query: 586 PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 P+V + D VF ++PS I P S S + + + + Sbjct: 671 PLVIIPDMAQGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKE 730 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERV 695 S E RL YV +TRA ++L++ H K S Y DM+ + + Sbjct: 731 DSQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGER 789 Query: 696 K--------KIKLTNSINKDEWIAYEWSTHHPENTPLERE------ETIKQLMDEQKIPK 741 + + S P R +K + Sbjct: 790 PDNVIQAGTPWPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQD 849 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800 ++ P + ++ L+ + + ++ G H+ + Q + Sbjct: 850 EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 909 Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINC 857 + + +R L + + A ++ ++V Sbjct: 910 LFDAEEVAELDEENTTQEAVAAEPSGAESRALRS--LCQAFEESRWAGATVLAVEKSFVM 967 Query: 858 PKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 ++ GR+D + + + ++KT + QLSIY + Sbjct: 968 TIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQA 1019 Query: 915 YPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1020 RGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILTT 1057 >gi|117619159|ref|YP_854747.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560566|gb|ABK37514.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 723 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 108/723 (14%), Positives = 228/723 (31%), Gaps = 132/723 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + + Sbjct: 30 GAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVIGDGVRGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F ++ L ++ + + + ++ LK + R Sbjct: 90 FHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLIRRVLKALNLDEKHWAPRAVMGYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + Y+E ++ ++DF +L++ ++L + I Sbjct: 150 KDEGLRPGDIDLYGDPVTRTYQQIYKTYQETCDRSGLVDFAELLLRAHELWLNKPH---I 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 +IL+DE QDT+ IQ+ +R L D + VGD+ QSIY + Sbjct: 207 LEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGD----------TGKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R Q I L ++RSTA+IL + V + G Sbjct: 257 RGAKIENIQRFLTDYQ--------GAETIRLEQNYRSTANILKAANCVIANNAERLGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + S + F+ + + AR + Sbjct: 307 -------------------ELW-------TEGAEGEPISLYAAFNEVDE-------ARFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 + + + D +L R + ++ Sbjct: 334 VGRLKDWKEKGGLL----------ADCAILYRSNAQSRVLEEALMQDAM----PYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468 + IKD MA R I ++ DD SF ++ +P + + + R + + +++ Sbjct: 380 LRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGDRTLEILRNNARDQGQNLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + I L H + + + +++ G Sbjct: 440 SAKALLGDKVLTGRAGNAVRGFVDLIDALEEQVSLLPLHQQADIAIQHSGLKAMYLAEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + ++ LDE + + ++ + + +L + L + + V++MT+ Sbjct: 500 EKSQARVENLDELVTACRQYQRPDELEDMSDLSAFLAHAALESGENQADEYADAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+V LV +F + Sbjct: 560 HSAKGLEFPLVLLVGVEEGMFPSQQST--------------------------------- 586 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 + EE RL YVGMTRA ++L IC + + + + + Sbjct: 587 -EESGRLEEERRLCYVGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIR 645 Query: 698 IKL 700 ++ Sbjct: 646 LRT 648 >gi|331654302|ref|ZP_08355302.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M718] gi|331047684|gb|EGI19761.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M718] Length = 1183 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 520 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 637 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 790 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 909 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 910 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 970 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1026 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1027 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123 >gi|218706314|ref|YP_002413833.1| exonuclease V subunit beta [Escherichia coli UMN026] gi|300898119|ref|ZP_07116485.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 198-1] gi|218433411|emb|CAR14313.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli UMN026] gi|284922756|emb|CBG35844.1| exodeoxyribonuclease V beta subunit [Escherichia coli 042] gi|300358177|gb|EFJ74047.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 198-1] Length = 1180 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDAITAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|258508010|ref|YP_003170761.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG] gi|257147937|emb|CAR86910.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG] gi|259649338|dbj|BAI41500.1| DNA helicase [Lactobacillus rhamnosus GG] Length = 750 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 138/795 (17%), Positives = 242/795 (30%), Gaps = 161/795 (20%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + K + P + K +A E+ + Sbjct: 66 AAREMRERVGKLV--DPEIARDIWVSTFHALCVRILRRDIDKL-GYNRAFMIADPAEQLT 122 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L+ P K + I K +L Q TY ++ Sbjct: 123 LVKHILADFNLDP-KRYDPKSILGAISGAKNELIDPQ-----------TYSDEQANSPFT 170 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + A Y++ + + LDF+DLI+ T L +K + ++ +I +DE QD Sbjct: 171 KTVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET---LGFYQRKFRYIHVDEYQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++ L E + L VGD QSIY + GA + +L K+ K Sbjct: 228 TNEAQYRLVHMLAEGY----------HNLCVVGDADQSIYGWRGANMQNILDFKKDYPK- 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RST IL+ + V N Q + Sbjct: 277 -------AQVILLEQNYRSTKTILSAANDVIKNNLNRQAKT------------------- 310 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW ++ + + + S + A + I + Sbjct: 311 --LW------TENATGDKITYYRA--------QSETDEAIFVIRRIEAEMAEHHR----- 349 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + I I D I+D +A R Sbjct: 350 ----KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYDRKEIRDALAYFRL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKF 481 +++ DD+SF ++ P + K+ ++ E + Sbjct: 402 VVNPADDMSFNRIVNEPKRGIGNTSVAKLEAFANQHDWSLLEAAANAELSPISGKARGNL 461 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538 K I L + + + IL + E + L+E L+ T Sbjct: 462 AKFGKMIQRLGQRRKDLNVTEMMQAILDDSGYLGTLRAANTLEAETRVENLEELLSVTQG 521 Query: 539 N------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 E + ++EL + EV +MT+H AKGLE PVVFLV Sbjct: 522 FDARYQPENEDSDIFVDFLAELALLSDQD--EVEEDAQEVTLMTLHAAKGLEFPVVFLVG 579 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F + + EE RL Y Sbjct: 580 MEEGLFPLS----------------------------------RAAMDEGELEEERRLAY 605 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 VG+TRA +L + + M+Y N+ + I+ + D A Sbjct: 606 VGITRAKQKLYLT-------------NAYARMLYGQRQNNPASRFIEEIDPELLDISGAA 652 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772 + + P +R + +S P + P+ GKT+ E+ Sbjct: 653 QPKSDIPFINRTDRAFSSP------------YSRHPETTGTPVTVKPAPTTGAGKTSWEA 700 Query: 773 LLS-DNQTFNRGLII 786 +++ + G ++ Sbjct: 701 GDKVEHRKWGIGTVV 715 >gi|315293808|gb|EFU53160.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 153-1] Length = 1180 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 126/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPEG 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KKS+ + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|85374356|ref|YP_458418.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] gi|84787439|gb|ABC63621.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] Length = 776 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 105/646 (16%), Positives = 196/646 (30%), Gaps = 118/646 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 Y+ K+ DF DL+++ ++ +K + + + ++L+DE QDT+ Sbjct: 195 AQFYELYQTRLKELNACDFGDLLLHMLNIFRKH---RDVLEQYQKRFKYVLVDEYQDTNA 251 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ +R L ++ + + VGD+ QSIYS+ GAE +LR ++ Sbjct: 252 VQYLWLRLLAQE----------RKNICVVGDDDQSIYSWRGAEVANILRFEKDFP----- 296 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + G + L Sbjct: 297 ---GAKVIKLEQNYRSTPHILAAASGLITANSERLGKT---------------------L 332 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W +V + + W + ARR+ I + Sbjct: 333 WTEVNAGEKVR---VIGVWDGPEE-----------ARRVGEEIERLEREGAPLD------ 372 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ +LVR + T ++ F + I+D +A R I Sbjct: 373 ----EVAILVRAQYQTREFEDRF----IQIGLNYRIIGGFRFYERAEIRDALAYLRVIAQ 424 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH------ 483 +DDL+F + P + K+ R + + A+ + Sbjct: 425 PQDDLAFERIYNQPKRGLGAKTLEKMHQHARRTGLPLAAASLQLADSDELPARASNTIGG 484 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 ++K ++ P + +L + E L+ E+ Sbjct: 485 LMKQFLHWREQSEKTEPAELLRQVLDESGYTAMLENEKTAEAKGRLENLSELARAMEE-- 542 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + L LE + + + +V IMT+H AKGLE VFL VF + Sbjct: 543 ---YETLGDFLEHVALVMDNDANPDEEKVTIMTMHAAKGLEFNHVFLPGWEEGVFPSQR- 598 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + ++ EE RL YV +TRA + Sbjct: 599 -------------------------------ALDEGGLASLEEERRLAYVAITRARRRCT 627 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 I +N ++ + + + T WS Sbjct: 628 ILHAAN----RRIYGQWTSSIPSRFIEELPDEQVESETTLTGGASLWRANWSESDDPFAH 683 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + R++ + + L S S + Sbjct: 684 VARDKPDRSAQRGPGWQRALESGYDTKQLAVKESRRSAASFAARPR 729 >gi|323966801|gb|EGB62232.1| exodeoxyribonuclease V [Escherichia coli M863] gi|327251567|gb|EGE63253.1| exodeoxyribonuclease V, beta subunit [Escherichia coli STEC_7v] Length = 1180 Score = 275 bits (703), Expect = 3e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARNEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------EETIKQLMDEQKIPKKLFSPI 747 L I W T + + E +++ + Sbjct: 847 PQDAAGLRTCIEALCDEDIAWQTAQTGDNQPWQFNDVFTAELNAKMLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|62181502|ref|YP_217919.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129135|gb|AAX66838.1| exonuclease V, beta chain [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715985|gb|EFZ07556.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1181 Score = 275 bits (703), Expect = 3e-71, Method: Composition-based stats. Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + + ++ V + P W +S S Sbjct: 467 TFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAVMQAHRYDLQYQLYTLALHR 1120 >gi|332184910|ref|ZP_08386659.1| uvrD/REP helicase family protein [Sphingomonas sp. S17] gi|332014634|gb|EGI56690.1| uvrD/REP helicase family protein [Sphingomonas sp. S17] Length = 765 Score = 275 bits (703), Expect = 3e-71, Method: Composition-based stats. Identities = 119/650 (18%), Positives = 205/650 (31%), Gaps = 125/650 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 L Y+E + DF DL+++ +LK + Q +I++DE QDT+ Sbjct: 185 AELYRQYQERLRSVNACDFGDLLLHMLTILKTH---RDVLEHYQQRFRYIMVDEYQDTNS 241 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+ +R L + + + + VGD+ QSIYS+ GA+ + +LR +R Sbjct: 242 VQYLWLRLLAQ----------ARKNIACVGDDDQSIYSWRGAQVENILRFERDFP----- 286 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I L ++RST IL V + G + L Sbjct: 287 ---GAKVIRLEQNYRSTPHILGAASGVIANNGGRLGKT---------------------L 322 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W ++ +D + ARR+ I + T Sbjct: 323 W-------TELDVGEKVRVLGVWDGPEE-------ARRVGEEIEAARRSGT--------- 359 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 DI +LVR + T + F + I+D +A R + Sbjct: 360 -SYGDIAILVRAQHQTREFEDRFIA----IGLPYRIVGGFRFYERAEIRDALAYLRVVNQ 414 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ P + + KI R + + + + Sbjct: 415 PSDDLAFERIVNVPKRGLGDKALAKIHQLARADGLPLTLAAARILDTDELTPQARRSLGN 474 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 +I I +A+ + +L + + E + L E + E Sbjct: 475 LIGDIARWRDMARDLPHAELARQMLDESGYTAMYQAEKSAEAAGRLENLTELVRAMEDYE 534 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + LE + R EV IMT+H AKGLE VFL +F Sbjct: 535 S--------LGAFLEHVSLVMDRDGDQREPEVTIMTIHAAKGLEFDTVFLAGWEEGLFPS 586 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + I + EE RL YV +TRA Sbjct: 587 QR--------------------------------AIDEGGTRSLEEERRLAYVAITRARR 614 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 + II +N + W + F + + I S+ E + + H + Sbjct: 615 KAIILHAAN-----RRIYGQWTSSLPSRFVGELPPEHIDSETSMTGGESLWRANWSEHAD 669 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 T + ++ + P++ + KG+ +L Sbjct: 670 PFANVARGTGRGPGWQRAAAGQNGLPVRPARIVESRAPSVGLGQKGRDDL 719 >gi|226365847|ref|YP_002783630.1| ATP-dependent DNA helicase [Rhodococcus opacus B4] gi|226244337|dbj|BAH54685.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4] Length = 1120 Score = 275 bits (703), Expect = 3e-71, Method: Composition-based stats. Identities = 141/1063 (13%), Positives = 270/1063 (25%), Gaps = 214/1063 (20%) Query: 5 FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64 + + + +LW L + VS + + + T A Q A ++ Sbjct: 134 LPIEPSATLLS-ETELWQLAHRVVSSWDGDLDTDRNPASVTEAVLALAGQLAEHLVEPDD 192 Query: 65 RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 L T P++ DL + L + Sbjct: 193 LREAHTELDKLVHTLPAGPRQRGGP------GKDLLDILDTQHRRVELL----------- 235 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 L + ++ LDF + + + +L Sbjct: 236 ----------PLVQRLTDTLRREGALDFGSQMSLAARVAADHPE---VGVAERTRFRVVL 282 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT Q ++ SL G+ L AVGD QSIY + GA + R Sbjct: 283 LDEYQDTGHAQRVLLSSLFGGGLDGELA------LTAVGDPMQSIYGWRGASAANLPRFA 336 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 G +EL S+R+ + L + + + R+ Sbjct: 337 TDFP---MANGDPAPTLELLTSWRNPPEALALANVASASLRERG------VAVSMLRARP 387 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 G V+L + +A I+ Sbjct: 388 QAVPGDVRLALTADVVQER--------------------------EWVADRIAE------ 415 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 +++ R VL+R+ D I + R + V L + D+ Sbjct: 416 QYADAASRGEDPPTAAVLIRRNADAAPIAEVLRS----RGLPVEVVGLGGLLHTPEVADV 471 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481 +A+ R + + V ML + D+ + + E Y A + Sbjct: 472 IAMLRVVADPMAGSAAVRMLTGARWQIGAADLTALSRRASELAIGTGYGTTGAVTDSAAL 531 Query: 482 QHVI---------------------------------------KYIHELIHIAQFCSPHD 502 + + L + Sbjct: 532 ADAVGEALPGEHAEQAGLADALADPGPAERYSQVGYARITAVAAELASLRERIGQ-PLTE 590 Query: 503 FFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQY 557 + + +R + LD F + + +++ L++ L Sbjct: 591 LVAEVERVLGIGIEAQARTRQSARGSAGREHLDAFADVVAGYANRTSATVTGLLAFLSAA 650 Query: 558 PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 + + V+++TVH+AKGLE VV + + VF + + Sbjct: 651 ESVEKGLAPGEVEVDPHRVQVLTVHSAKGLEWEVVAVSHLTAGVFPSRTASGSWLGAVGE 710 Query: 614 DDPGIPIWIPQ------------------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 P + + K V L +E RL YV + Sbjct: 711 LPPSLRGDRARPGESADGVPVLELENLYDRKDLEEAVKAHKSALAARRLDEDRRLFYVAL 770 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWY-------------------DMVYDSFHNDERVK 696 TR L H + + + + D+ + +E+ Sbjct: 771 TRTERVLFASGHHWAESGTEPKGPSEFLTELRDTVTGEEHEGIGVVDLWAPAPEPEEQNP 830 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPL-----------------EREETIKQLMDEQKI 739 S L E E +D Sbjct: 831 LTSTPKSAVWPRDPLGLRREAVERGAALVVAALRNAGKQSPAGEDEDPENWAADVDALLA 890 Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQ 791 ++ + + ++ P L+ S + N RG H ++ Sbjct: 891 EREARANARAEVVLPGQLSVSQLVELEADPDALAARLRRPLPFPPNPLARRGTAFHAWVE 950 Query: 792 VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851 R+ T + L A + + L++ + + + + +EV Sbjct: 951 ---------RRFGATRLLDLDE-LPGAADTGAGPDADLATLQDAFLRSPWADRNPTEV-- 998 Query: 852 SGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910 ++ GRID + + ++KT E + QL+ Y Sbjct: 999 EVPFETSVAGTVLRGRIDAVFTDPDGGWTVIDWKTGAEPSAANEKAV---VMQLAAYRLA 1055 Query: 911 LKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951 + P + + YV + + A A + Sbjct: 1056 WAELMDVPIERVRAAFHYVRTGRTIAPDRLPGADALARLLRTA 1098 >gi|314923610|gb|EFS87441.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1] Length = 1071 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 151/997 (15%), Positives = 296/997 (29%), Gaps = 139/997 (13%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSS 71 + L + +NK + G I + L A + + Sbjct: 135 AARAYQLAAEVIMGLNKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQ 194 Query: 72 FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 L + T+ + D+ + L + + + Sbjct: 195 MLL--------DAPTKRGGDRYADIDKWLSRVDEREELL--------------------- 225 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ KK+ +++F D ++ L+ + ++ +L+DE QDTS Sbjct: 226 DLVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSA 282 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q +V+ +L F + H + AVGD Q+IY + GA +L R + Sbjct: 283 QADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---E 336 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 G ++ L + R I+ V + ++ +R S + Sbjct: 337 GTPAQVLSLATNRRCADQIINVAN--------------VASEELRQTLSSAAESDDHDPA 382 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 Q E ++ + A T+ TI Sbjct: 383 GDRAEVAVGQPLIAPEGNRRGEVTVAAYPDWVKECQACADTLVEAKERGTI--------A 434 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + D +LVR+ D + + V + L I ++A R ++ + Sbjct: 435 RWSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRLLVDR 490 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFAN 475 +DD + +L +P S DD+ + + + + + + Sbjct: 491 QDDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRP 550 Query: 476 CGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529 G + Q +K + I Q SP D I + + D L Sbjct: 551 GGHERLQCAVKRVCAEIVEVDAHQGDSPDDLVLRIEAITGLIDDIAADDPHRSAARRDHL 610 Query: 530 DEFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLES 585 D N ++ ++ +++ L + RA + + + V + TVH AKGLE Sbjct: 611 DALWNAIREVRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEW 670 Query: 586 PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 P+V + D VF ++PS I P S S + + + + Sbjct: 671 PLVIIPDMAQGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKE 730 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERV 695 S E RL YV +TRA ++L++ H K S Y DM+ + + Sbjct: 731 DSQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGER 789 Query: 696 K--------KIKLTNSINKDEWIAYEWSTHHPENTPLERE------ETIKQLMDEQKIPK 741 + + S P R +K + Sbjct: 790 PDNVIQAGTPWPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQD 849 Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800 ++ P + ++ L+ + + ++ G H+ + Q + Sbjct: 850 EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 909 Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINC 857 + + +R L + + A ++ ++V Sbjct: 910 LFDAEEVAELDEENTTQEAVAAEPSGAESRALRS--LCQAFEESRWAGATVLAVEKSFVM 967 Query: 858 PKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914 ++ GR+D + + + ++KT + QLSIY + Sbjct: 968 TIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQA 1019 Query: 915 YPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949 + + +V + A I T Sbjct: 1020 RGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILT 1056 >gi|325300614|ref|YP_004260531.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] gi|324320167|gb|ADY38058.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] Length = 753 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 95/677 (14%), Positives = 188/677 (27%), Gaps = 126/677 (18%) Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDLI 153 Q ++ + + + + + A Y E +++ +DF+DL+ Sbjct: 139 AVQSRISNAKNHLILPEAYAANAELYQSDLEAKMPSLRDIYARYWERCRQSDAMDFDDLL 198 Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213 + T L ++ +R K +L+DE QDT+ Q ++ LTE Sbjct: 199 VYTYLLFERFPE---VREKYASRFRFVLVDEYQDTNFAQHRIVWQLTE----------KS 245 Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273 R + VGD+ QSIYSF GA +L+ ++ + +L ++RST I+ Sbjct: 246 RRVCVVGDDAQSIYSFRGANIDNILKFTEEY--------KEARLFKLEQNYRSTQTIVNA 297 Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 + + + S + + + + Sbjct: 298 ANSLIAKNSEQIRKEVFS----------------------------EKAKGEPIPVFNAY 329 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 + + +A I + D +L R + + Sbjct: 330 SDVEEGDI-------VANQIVKLAAGG---------AYGYDDFAILYRTNAQSRIFEEAL 373 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 R + IKD++A R +++ D+ +F ++ P + + Sbjct: 374 R----KRGLPYRIYGGLSFYQRKEIKDIVAYFRLVVNPNDEEAFKRIINFPARGIGDTTL 429 Query: 454 FKICTQRHE-TETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 KI +++ Y A +K Q I A + ++ Sbjct: 430 NKIIDAATRANVSLWTVLNEPLAYGLSLAKNTCAKLQGFRDLIAGFAEDAVRKNAYEVGQ 489 Query: 506 LILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPP 559 I+ + E + ++E +N + + L L + Sbjct: 490 DIVRRSGIIAEIYRDRTPENLSRQENVEELINGMHDFCASREEEGNERVSLSDYLSEISL 549 Query: 560 TIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + +MT+H+AKGLE VF+V +F + Sbjct: 550 LTDLDSEEGEGARITLMTIHSAKGLEFKNVFVVGLEENLFPSPMASGSY----------- 598 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 EE RL YV +TRA + + + K Sbjct: 599 -----------------------RQLEEERRLFYVAVTRAEEHCFLSFAKSRFKYGKMEF 635 Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738 + + D ++ + K L + Sbjct: 636 CSPSRFLRDIDACYLKLPLDGGVPASPKRVMSDAPRFAKPEPPRVLRKVSLSPAPEGMPS 695 Query: 739 IPKKLFSPIKNDINEPY 755 + I Sbjct: 696 SKPGAAVEVGQTIEHER 712 >gi|117918924|ref|YP_868116.1| DNA-dependent helicase II [Shewanella sp. ANA-3] gi|117611256|gb|ABK46710.1| ATP-dependent DNA helicase UvrD [Shewanella sp. ANA-3] Length = 722 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 189/551 (34%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R R Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERLGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGEPISLYCAFNEMDE-------ARFIVGRINDWYEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I ++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R + T+++ + A S + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I L Q + + ++ A + + + G + + L+E + E Sbjct: 463 DLIVTLQEETQDMALYRMTDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|321159776|pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd Length = 647 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 100/581 (17%), Positives = 185/581 (31%), Gaps = 116/581 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL+ + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + AR + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + K + + +++ Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 647 >gi|26992028|ref|NP_747453.1| DNA-dependent helicase II [Pseudomonas putida KT2440] gi|24987163|gb|AAN70917.1|AE016735_10 DNA helicase II [Pseudomonas putida KT2440] Length = 728 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 118/721 (16%), Positives = 229/721 (31%), Gaps = 132/721 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + ++ + L + Sbjct: 33 GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109 F + L F Q+ +I + + + D ++ + FI + Sbjct: 93 FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFINGQ 152 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + L + + YE+A ++ V+DF +L++ DL + + Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ +Q+ +R L +L AVGD+ QSIY + Sbjct: 210 LEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAR----------GGDSLMAVGDDDQSIYGW 259 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + +I L ++RST IL + + + G Sbjct: 260 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 309 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + + + ++ + AR + Sbjct: 310 -------------------ELW-------TDMGEGEPLTLYAAYNEHDE-------ARYV 336 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 TI +++ +I +L R + ++ +I Sbjct: 337 VETIESLVKQGNAR----------NEIAILYRSNAQSRVLEEAL----LRERIPYRIYGG 382 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IK+ MA R I + +D + ++ P E + I RH +++E Sbjct: 383 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWE 442 Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519 + + K I+ I L H + Q+ Sbjct: 443 AMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLITYHQEEKG 502 Query: 520 RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G ++ L+E ++ E + L L + L + + +++MT+ Sbjct: 503 EKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTL 562 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VFLV +F HK + Sbjct: 563 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 593 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA QL++ V + + + Sbjct: 594 -----RLEEERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVR 648 Query: 698 I 698 + Sbjct: 649 L 649 >gi|257453952|ref|ZP_05619228.1| ATP-dependent DNA helicase Rep [Enhydrobacter aerosaccus SK60] gi|257448617|gb|EEV23584.1| ATP-dependent DNA helicase Rep [Enhydrobacter aerosaccus SK60] Length = 679 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 114/679 (16%), Positives = 224/679 (32%), Gaps = 126/679 (18%) Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 S L + N+ E + + + +++ I +T + Sbjct: 109 MDAEDSKRLLMDLMVRDNMSGAESRELVGKAIKMISDWKNDLIPPEKAADTLTDPEDM-- 166 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 L L YE + +DF+DLI+ LL++ +R K I ++L+DE Sbjct: 167 ---LFATLYQLYERNLRAYNAVDFDDLIVMPTRLLQEN---TQVRDKWQNRIRYLLVDEY 220 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+E+I+ L VGD+ QSIY++ GA+P+ + + Sbjct: 221 QDTNTAQYELIKLLVG----------VQPRFTVVGDDDQSIYAWRGAKPENMALLQEDFP 270 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 K +++L ++RST+ IL + V + E+ S Sbjct: 271 K--------LKVVKLEQNYRSTSRILHAANSVITNNEHLFEKKLWSDK------------ 310 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 G +L + ++D A R+A I ++ Sbjct: 311 GHGELIRIINCRNDDD-----------------------EAERVAKEI---------ITH 338 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + +D VL R ++ R L+ I + IKD+M+ Sbjct: 339 KLRNANDWQDYAVLYRSNFQARMLEAQLRQLQ----IPYKLSGGTSFFARSEIKDIMSYL 394 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGI 478 R IL+ EDD +F+ ++ +P + K+ + ++ Sbjct: 395 RLILNPEDDSAFLRIINTPKRGLGPASLEKLGLFAQEHQVSLLMASGHSGLTHVLPKKAS 454 Query: 479 SKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEF 532 + + +I P ++ S ID ++ Sbjct: 455 GELKEFADFIERYTQELYQHPDPVPLVKQMIDETGYIDLVRSEAKTPQQEKIRIDNIETL 514 Query: 533 L----NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 N R + + ++ +I +L ++ N N+V +MT+H AKGLE V Sbjct: 515 YASIQNLINRADDDDDRTIDAVIRKLVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYV 574 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 +++ ++ HK+ + + EE Sbjct: 575 YIMGLEEELLPHKNS-----------------------------------IIAESIEEER 599 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RL+YVG+TRA +L + + + T + + +K + + ++ + Sbjct: 600 RLMYVGITRARKELTMTMAAQRRAGGQMKTTTPSRFIDELPAEHIDAPGMKKSAAAHQPK 659 Query: 709 WIAYEWSTHHPENTPLERE 727 A ++ + + Sbjct: 660 KTADDYLANIQALLKSKAA 678 >gi|89891413|ref|ZP_01202919.1| DNA helicase [Flavobacteria bacterium BBFL7] gi|89516444|gb|EAS19105.1| DNA helicase [Flavobacteria bacterium BBFL7] Length = 775 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 107/725 (14%), Positives = 226/725 (31%), Gaps = 130/725 (17%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEA 140 K + + K + ++ ++ I +R FN + ++ + + Y E Sbjct: 126 KEMGLDKDVYKYKQIASRISSMKNSLITVRAYFNDADLQEADAMARRPRFGDIYKEYVER 185 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 K +DF+DL++ TN+LL + + K +IL+DE QDT+ Q+ ++++L+ Sbjct: 186 CFKAGAMDFDDLLLKTNELLNRFPE---VLAKYQNRFQYILVDEYQDTNHSQYLIVKALS 242 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + F + + VGD+ QSIY+F GA +L +R + L Sbjct: 243 DKF----------QNICVVGDDAQSIYAFRGANINNILNFQRDYE--------GVKAYRL 284 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST +I+ + + + + + Sbjct: 285 EQNYRSTKNIVEAANSIIDKNKTKLDKVVWTA---------------------------N 317 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 P+ D+ R +A +I F N ++ + +L Sbjct: 318 NDGPKIIVHRLMSDAEEG--------RYVAGSI---------FENKMQKQLGNDQFAILY 360 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + + R I +KD++A R I++ +D+ S + Sbjct: 361 RTNAQSRAMEDALR----KRDIPYRIYGGLSFYQRKEVKDVLAYLRVIVNPKDEESLKRI 416 Query: 441 LKSPLFNFSEDDIFKICTQRHET--------ETVYEYIQKFANCGISKFQHVIKYIHELI 492 + P + K+ E + A+ +K ++ + I Sbjct: 417 INYPARGIGATTMDKLIVAAKHYDRSIFEVIEHIDRIDIGIASSTKTKLKNFVMMIKSFQ 476 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN---EQNSYSS 546 + + S + ++ + E I + ++E LN ++ + Sbjct: 477 ALEETQSVFELTEYVIKKSALINELKKDGSQEGISKVENIEELLNGMRDFVEGQKEVDEA 536 Query: 547 LQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L LE + + + V +MT+H AKGLE P V++V +F Sbjct: 537 RGSLAEFLEDVALATDLDNEKDTDDRVSLMTIHLAKGLEFPYVYIVGMEEDLFPSGMSMN 596 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 YV +TRA Q + Sbjct: 597 TREELEEERRL----------------------------------FYVALTRAEHQAYLT 622 Query: 666 K----HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + R ++ + + +++ W + S Sbjct: 623 YTLSRYRWGKLVDAEPSRFITEIDDQYLEYTTPMDDYRYKSALTDHLWDEPDKSKLRQRK 682 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781 + ++ + ++Q + P + N T++ ++ + F Sbjct: 683 PVSGKPPSVSRPSEDQIRKLRKIRPSSSSNNSKSSGFEGTLE-------PGMIVSHGRFG 735 Query: 782 RGLII 786 RG ++ Sbjct: 736 RGTVV 740 >gi|237806835|ref|YP_002891275.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187] gi|237499096|gb|ACQ91689.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187] Length = 1175 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 124/826 (15%), Positives = 259/826 (31%), Gaps = 121/826 (14%) Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208 F+DL+ N L + + +I ++ +IDE QDT +Q+++ +L Sbjct: 346 FDDLLTNLARAL-NSERGVLLAERIREQYPVAMIDEFQDTDPLQYQIFSTLY-------- 396 Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 H+ + +GD KQ+IY+F GA+ ++ K+ T L +FRST Sbjct: 397 AHNPECGFYMIGDPKQAIYAFRGADIFTYMQAKQQVAAHYT----------LQTNFRSTD 446 Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328 +++T V+ +F+ G I + R + + + C P + + Sbjct: 447 ELVTAVNALFAH----SGAPFIYQQDIPFEAVRAKGKKAGFVLQGLPQTALQCCFPLEGT 502 Query: 329 WTSYFDSLPQESSASILARRIAYTISNMI-GTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387 + + +A A I + G + + ++ DI VLVR ++ Sbjct: 503 G-----EVSGAAYQQRMALAAAAQIHTWLVGAQQQQATLDGKPLRPNDIAVLVRSGREAA 557 Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 ++ R SV ++R + +D+ L L+ +D++ + + L Sbjct: 558 VMQQALRECGIA---SVYLSNRESVFAQAVAQDVARLLEACLNPQDEMLIRAAMATGLQG 614 Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 ++ + ++ ++ ET++E + +++ L + Q+ + + Sbjct: 615 WTVSQLARL----NDDETLWEQTVEHIRLAGELWRNR----GILPMLRQWLFWYQIPERL 666 Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRA 564 L G +Q L E L L E L E + + Sbjct: 667 LADTNGERQLTDVL------HLGELLQTAASTLNGEHALLRWLLERCHQPNGDADEQQLR 720 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + V+I+T+H +KGL+ +V L + + MP + G+ + + Sbjct: 721 LDSERQRVQIVTIHKSKGLQYGLVLLPFICAYRGN--------DMPRYHTGNGVQLDLTG 772 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 S + + E RLLYV +TR + N K + Sbjct: 773 S-------EHAWEKAAEERLAEDLRLLYVALTRGVFVTWLGLADLKINSKTKAKDDRPAA 825 Query: 685 VYDSFHNDERVK--------------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 + ND + P P R + Sbjct: 826 LDYLLKNDSDSALTVRFRQWLQQLNNHDRAAEVAEIAFPQTPYHEISVPLPAPQARHFSG 885 Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790 + + + + + L D + + + S + + G +H LL Sbjct: 886 QLERNWRVTSYSALTVSHSTYQPTPPLPVVVSDEEPQAPRFDVFSFPRGAHAGTFLHSLL 945 Query: 791 QVIFTLPEH----KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAM 841 + + + K + P L +T++L + + ++ Sbjct: 946 EDLDFGADDAFCRKWITEHLQGVQLSHDWQPEPWQPVLEQWLTQILNSELFPGLSLSQLT 1005 Query: 842 SCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQ 876 SE+ + + + G ID + Q Sbjct: 1006 PQQCLSEMEFLLPLAPLSAPALNRCLAAGDALSANAPPLAFNEVQGMLKGFIDLVFEHQG 1065 Query: 877 NIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913 ++ +YK+++ + + Q +Y L Sbjct: 1066 RFYVVDYKSNYLGDNPAAYQQDAMAQAMLEHRYDVQYQLYTLALHR 1111 >gi|2625021|gb|AAC46278.1| DNA helicase II [Serratia marcescens] Length = 720 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 119/722 (16%), Positives = 226/722 (31%), Gaps = 132/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L + ++ + + + LK +K + + R Sbjct: 90 FHGLAHRLLRAHHLEANLPQDFQILDSDDQLRLLKRIIKALNVDEKQWPPRQAMWYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + Y+EA + ++DF +L++ ++L + I Sbjct: 150 KDEGLRPQHVETYNNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + ++L+DE QDT+ IQ+ IR L + VGD+ QSIY + Sbjct: 207 LNHYRERFTNVLVDEFQDTNSIQYAWIRLLAG----------GNSNVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R + I L ++RST++IL + + + + G + Sbjct: 257 RGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILKAANTLIANNDGRMGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TEGGEGEPISLYCAFNELDE-------ARFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D +L R + ++ + Sbjct: 334 VNRIKTWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468 + IKD +A R I ++ DD +F ++ +P + + + R T+++ Sbjct: 380 QRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQAARDRQLTLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFIS 519 ++ S Q I+ + L H H ++ +Q Sbjct: 440 ATRELMQDKVLAGRAASALQRFIELVESLAHETADMPLHVQTDRVIRDSGLFIMYEQEKG 499 Query: 520 RFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G I+ L+E + T + Q+ Y L L + L + A + V++MT+ Sbjct: 500 EKGQARIENLEELVTATRQFSYQDEYQDLMPLQAFLSHAALEAGEGHADAYQDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+VF+V +F + Sbjct: 560 HSAKGLEFPLVFIVGMEEGMFPSQMSLDEGG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA +L + K + + + Sbjct: 591 -----RLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVR 645 Query: 698 IK 699 ++ Sbjct: 646 LR 647 >gi|324005623|gb|EGB74842.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 57-2] Length = 1180 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 126/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KKS+ + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 + N++ + ++ L IT +L+ P+ + D E+ Sbjct: 967 QVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|323180256|gb|EFZ65808.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1180] Length = 1170 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 296 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 354 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 355 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 406 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 407 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 456 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 457 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 506 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 507 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 566 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 567 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 623 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 624 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 675 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 676 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 729 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 730 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 776 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 ++ + E RLLYV +TR+ L + +KK + + E Sbjct: 777 VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 836 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E +++ + Sbjct: 837 PQDAAGLCTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARMLQRLPGDNWRVTSY 896 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 897 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 956 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 957 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1013 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1014 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1073 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1074 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1110 >gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] Length = 723 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 105/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + +S + + + Y+E + ++DF +L++ ++LL+ + Sbjct: 149 RRPEHIQPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPA---LLTH 205 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 ILIDE QDT+ IQ+ +R L + +FAVGD+ Q+IY + GA Sbjct: 206 YRSRFREILIDEFQDTNAIQYAFVRVLA----------NDTGHIFAVGDDDQAIYGWRGA 255 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V + I L ++RS+A+IL + + + + G Sbjct: 256 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 303 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + ++ + + AR I Sbjct: 304 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 332 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + +I VL R + + + Sbjct: 333 ARQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSEHM----PYRVYGGMRF 378 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IKD +A R + ++ DD +F ++ +P+ E + ++ R + +++ Sbjct: 379 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 438 Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 + + + +L + +L + RQ + Sbjct: 439 ACTQSTTLTARARNALASFLNLLQQLALETNQMDLAERIDHMLQRSELRQHWKKEARGSL 498 Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575 + LDE ++ R + EL + L A V++M Sbjct: 499 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQVQAGEEGVQLM 558 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P+VFLV + +F H Sbjct: 559 TLHSAKGLEFPLVFLVGLENGLFPSARCLDEHG--------------------------- 591 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 EE RL YVG+TRA +LI+ K N + + + Sbjct: 592 -------RLEEERRLAYVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQDLLHE 644 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + + S A + + P+ Sbjct: 645 VRPTIQVSHQPPLGAAQRPAHDERDAAPI 673 >gi|145301020|ref|YP_001143861.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449] gi|142853792|gb|ABO92113.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449] Length = 723 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 110/723 (15%), Positives = 229/723 (31%), Gaps = 132/723 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + + S + + + + + + Q Sbjct: 30 GAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVLGSMQRGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F ++ L ++ + + + ++ +K + R Sbjct: 90 FHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLIRRVIKALNLDEKHWAPRAVMSYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + Y+E ++ ++DF +L++ ++L + I Sbjct: 150 KDEGLRPGDIDLYGDPVTRTYQQIYKTYQETCDRSGLVDFAELLLRAHELWLNKPH---I 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 +IL+DE QDT+ IQ+ +R L D + VGD+ QSIY + Sbjct: 207 LEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGD----------SGKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R Q I L ++RSTA+IL + V + G Sbjct: 257 RGAKIENIQRFLTDYQ--------GAETIRLEQNYRSTANILKAANCVIANNSERLGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW Q S + F+ + + AR + Sbjct: 307 -------------------ELW-------TEGAEGDQISLYAAFNEVDE-------ARFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 + + + D +L R + ++ Sbjct: 334 VGRLKDWKEKGGLL----------ADCAILYRSNAQSRVLEEALMQDAM----PYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IKD MA R I ++ DD SF ++ +P + + + R + +++ Sbjct: 380 LRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGDRTLEILRTNARDQGLNLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + N + + + I L H + + + +++ G Sbjct: 440 SAKGLLNDKVLTGRAGNAVRGFVDLIDALEEQVGMLPLHQQADIAIQNSGLKAMYLAEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + ++ LDE + + + + + +L + L + + V++MT+ Sbjct: 500 EKSQARVENLDELVTACRQYNRPDELEEMSDLSAFLAHAALESGENQADEYADAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+V LV +F + Sbjct: 560 HSAKGLEFPLVLLVGVEEGMFPSQQST--------------------------------- 586 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 + EE RL YVGMTRA ++L IC + + + + + Sbjct: 587 -EESGRLEEERRLCYVGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIR 645 Query: 698 IKL 700 ++ Sbjct: 646 LRT 648 >gi|89091856|ref|ZP_01164811.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92] gi|89083591|gb|EAR62808.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92] Length = 669 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 99/652 (15%), Positives = 211/652 (32%), Gaps = 127/652 (19%) Query: 68 LLSSFFLTQKFTPQKNIITQEINKK----SPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 + F+ + T+ + K + +++ Q++ ++ T + Sbjct: 96 EYKTLGFKPGFSIFDDQDTKALLKDLMLHHNEDTDQVDFVQNQISNWKNEMLTPEEALVQ 155 Query: 124 LASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 LA YE+ + +DF+DLI+ L + + + + ++L Sbjct: 156 AQLPQDILAARAYEVYEQHLRAYNAVDFDDLILVPVRLFTEHP---NVLERWQNRLRYLL 212 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT+L Q+ +++ L L VGD+ QSIY++ GA P+ + + + Sbjct: 213 VDEYQDTNLSQYRLVKLLVGHRGA----------LTVVGDDDQSIYAWRGARPENLNQLE 262 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + +++L ++RST+ IL + + + + + S + Sbjct: 263 QDYP--------SLKVVKLEQNYRSTSRILKAANTLIANNPHVYEKTLWSEMGM------ 308 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 G V + RIA I+++ Sbjct: 309 -GDPIRV----------------------------IHTKNEDGECERIAMEITDLH---- 335 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 + +Q +D+ +L R L+ + + + N IKDL Sbjct: 336 -----LRNGVQFRDMAILYRGNFQARLLEMKLQHFQ----VPYKLNGGTSFFARAEIKDL 386 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-- 478 M + +++ +DD +F+ ++ P + K+ +++ + Sbjct: 387 MGYLKVLVNPDDDNAFLRIINLPRREIGPSTLQKLGQYSVDRQISMFNACSELGLEQAMP 446 Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VL 529 + + ++ + P ++ +E + + Sbjct: 447 ANAVERLRRFCDWMQHIYRQCHSGDPIAAINEMIRDIDYEGWIAQNSSSEAMAEKRMQNV 506 Query: 530 DEFLNFTLR-----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584 ++ E + + +QE I+ L ++ + N V++MT+H +KGLE Sbjct: 507 WFLMDSLKATLERLQEDDPDAGIQEAINRLMLIDMLDRQEEEDDSNRVQLMTLHASKGLE 566 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 P VFL+ ++ H ++ Sbjct: 567 FPHVFLMGMEEELLPH-----------------------------------RNSIETDNI 591 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 EE RL YVG+TRA L I + + + D V+ Sbjct: 592 EEERRLAYVGITRAKQCLTITLAKQRKQYGEVMDCMPSRFLDELPPEDLEVE 643 >gi|309379709|emb|CBX21698.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 670 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 112/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E K +DF+DLI Sbjct: 126 KEAVFKAQHQISLWKNDLKTPEDVLQTASNIWEQQTARVYASYQETLKSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +++L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 285 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 312 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 313 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 360 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 361 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 416 Query: 453 IFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 417 LGKLNTYAHEHECSLYEAAQNEEALAALNNTNRQHLQAFMDMFGNYRAKAETGDAGEFIN 476 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + E +++ R ++ EL + Sbjct: 477 SLLKEIGYENHLMQNEEGKAGEIKWRNVGELVSWFARKGGEDGKNIIELAQTVALMTLLD 536 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 537 GKD-EEEADAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 575 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA +L + + Sbjct: 576 ---------------DSIEEGNVEEERRLMYVGITRAKRRLTLTHCVKRKKQGIWQFPEP 620 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 621 SRFIGEMPQED 631 >gi|218701534|ref|YP_002409163.1| exonuclease V subunit beta [Escherichia coli IAI39] gi|218371520|emb|CAR19358.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli IAI39] Length = 1180 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + + L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|301027507|ref|ZP_07190844.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 69-1] gi|300395015|gb|EFJ78553.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 69-1] Length = 1180 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 133/971 (13%), Positives = 296/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + RS+ H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRSIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARKIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDAITAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ ++ D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|300936256|ref|ZP_07151189.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 21-1] gi|300458581|gb|EFK22074.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 21-1] Length = 1180 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + + L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|306812276|ref|ZP_07446474.1| exonuclease V subunit beta [Escherichia coli NC101] gi|305854314|gb|EFM54752.1| exonuclease V subunit beta [Escherichia coli NC101] Length = 1180 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 297/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S ++ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KKS+ + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYILALHR 1120 >gi|161506463|ref|YP_001573575.1| exonuclease V subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867810|gb|ABX24433.1| hypothetical protein SARI_04666 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1181 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 129/971 (13%), Positives = 285/971 (29%), Gaps = 144/971 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNP-------TILKKAQTLQQASQTQCIEERF 66 E I + + +++ +L +G K + + +Q + + Sbjct: 223 EQILARINQVKQQWCEAVSELEALFESSGIDRRKFNRGNQAKWIEKITAWAQEETKNYQL 282 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 F + + + L + Sbjct: 283 PEALGKFSQRFLDERTKAGGVTPRHPLFVAIDNLLSEPLSIKDLV--------------L 328 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + K++ L F+D++ + L+ + + I +IDE Q Sbjct: 329 TRALSEIRETVAQEKRRRGELGFDDMLSRLDAALR-SESGEALAAAIRTRFPVAMIDEFQ 387 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT Q+ + R + H L +GD KQ+IY+F GA+ ++ + Sbjct: 388 DTDPQQYRIFRRIWR--------HQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSA 439 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 T L ++RS ++ V+K+FS +A + + ++ Sbjct: 440 HYT----------LDTNWRSAPGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAQRNQSLQF 489 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN- 365 V + P W +S S +A+ A I + + Sbjct: 490 KV----------NDVPQPAMTLWLMEGESCGSGDYQSYMAQVCATQIRDWLRAGQTGDAL 539 Query: 366 ----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 R ++A DI VLVR R++ LI L SV ++R + + L +++ Sbjct: 540 LMNGDASRPVRASDISVLVRSRREAALIRDALTLL---AIPSVYLSNRDSVFETLEAQEM 596 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481 + + + +++ E + + L + + + DI + + + V E + Sbjct: 597 LWVLQAVMAPERENTLRSALATSMMGLTALDIETLNNDENAWDAVVEEFDGYRQMWHK-- 654 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LR 538 + V+ + L S + +L G ++ + E L L Sbjct: 655 RGVMPMLRAL------MSARNIAENLLATAGGERRLTDIL------HISELLQEAGSQLE 702 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 +E L + I E + + + ++ + V+I+T+H +KGLE +V+L Sbjct: 703 SEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVTIHKSKGLEYSLVWLPFITHFRV 762 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + ++ + + I+ + E RLLYV +TRA Sbjct: 763 QDQAFYHDR-------------HSYEAVLDLSHAEESIELAEAERLAEDLRLLYVALTRA 809 Query: 659 SDQLIICKH------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712 + S+ E +Q ++ D + + +D Sbjct: 810 VWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDAAGLRACIEALCGEDIVCRT 869 Query: 713 EWST--HHPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPS 760 +T + E + + + D+ + Sbjct: 870 PGNTDNDRWQIAAASHTELSARTLQRLPYDSWRVTSYSGLQQRGHSVAQDLIPRLDIEAV 929 Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 + + + + + G +H L + + + + Sbjct: 930 GVGEAAEALTMTPHHFPRGASPGTFLHSLFEELDFTQPVNPQWVQEKLELSGFETRWEPM 989 Query: 821 YKNLLLSITRLLENPM---MTTAMSCDSYSEV----SVSGKINCPKKDIIIS-------- 865 L S+ + N ++ + E+ + + + D +I Sbjct: 990 LTRWLDSVLHVALNETGVSLSMLTEREKQVEMEFYLPIVQPLTAGELDALIRRYDPLSAG 1049 Query: 866 --------------GRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 G ID + + ++ +YK++ + + Sbjct: 1050 CPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|126664112|ref|ZP_01735105.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38] gi|126623826|gb|EAZ94521.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38] Length = 778 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 107/675 (15%), Positives = 209/675 (30%), Gaps = 136/675 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y E K+ +DF+DL++ TN+LL + + K +IL+DE QDT+ Sbjct: 180 EIYQQYVERCFKSGAMDFDDLLLKTNELLN---LFPDVLAKYQDRFRYILVDEYQDTNHS 236 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++R+L++ F + VGD+ QSIY+F GA +L ++ + Sbjct: 237 QYLIVRALSDRF----------HNICVVGDDAQSIYAFRGANINNILNFQKDYEN----- 281 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + L ++RS+ +I+ + V + ++ +++ Sbjct: 282 ---VQMYRLEQNYRSSKNIVEAANNVIDKNKTKLDKIVWTSN---------DDGPKIKVH 329 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + R +A TI F + + Sbjct: 330 RSLTDGEEG--------------------------RFVAATI---------FEQKMQNQM 354 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +L R + + R I IKD++A R +++ Sbjct: 355 LNGQFAILYRTNAQSRAMEDALR----KRDIPYRIYGGLSFYQRKEIKDVLAYLRLVINP 410 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG-------ISKFQH 483 +D+ + V ++ P + + K+ + +++E ++ +K Sbjct: 411 KDEEALVRVINYPARGIGDTTVEKLTVAANHYKRSIFEVMEHIDKIDLKLNSGTKAKLND 470 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + I I + + Q+ E I+ ++E LN Sbjct: 471 FVTMIKSFQVINENQDAFFLTDHVTKKTGLVQELKKDGTPEGIARIENIEELLNGIKDFT 530 Query: 541 QNSYS------SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + +L E + ++ T + + + V +MT+H AKGLE P VF+V Sbjct: 531 EGQKEIDGARGALAEFMEDVALA--TDLDKDTGDDDRVALMTIHLAKGLEFPHVFIVGLE 588 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F +S EE RL YV Sbjct: 589 EDLFPSAMSLNT----------------------------------RSELEEERRLFYVA 614 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +TRA Q + + K + + + K + Sbjct: 615 LTRAEHQAYLTYAQSRYRWGKLVDSEPSRFIEEINDQYLEYLNPVDSGYRYKPVMNIDVF 674 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 L + PK L L P + ++ +++ L Sbjct: 675 GDIDKSKLRLAKPTAG-------TPPKYLTQDEPVSSANIRRLKPVSSNSGSSNVVDANL 727 Query: 775 SDNQTFNRGLII-HK 788 G I+ H+ Sbjct: 728 ------AVGNIVMHE 736 >gi|325142627|gb|EGC65018.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 961-5945] Length = 671 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 111/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKIV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + +++ R ++ EL + Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|311278235|ref|YP_003940466.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae SCF1] gi|308747430|gb|ADO47182.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae SCF1] Length = 1179 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 112/874 (12%), Positives = 263/874 (30%), Gaps = 129/874 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + L + K++ L F+D++ + L+ + Sbjct: 308 LFDAVEALLAAPPSLDDLVISRAMVEIRDAVAREKQRRGELGFDDMLSRLDKALQG-ESG 366 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 367 EALAGAIRSRFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPETALLLIGDPKQAI 418 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ +R + G + L ++RS ++ V+++F + EN Sbjct: 419 YAFRGADIFTYMRAR----------GDVAAHYTLDTNWRSAPGVVQSVNRLFGLSENPFM 468 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 E + ++ +L + P W + + +A Sbjct: 469 FREIPFLPV--NAAAKNHGLRFEL--------QGETQPAMSLWLMPGNGVGVGDYQHFMA 518 Query: 347 RRIAYTISNMIGTDTIFSNGKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + R +QA DI VLVR R + L+ L Sbjct: 519 QLCAGQIRDWLSAGQRGEALLWRDSASRPVQASDITVLVRNRLEASLVRDALNAL---AI 575 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + ++L+ + + +L+ E + L + +F + D+ + Sbjct: 576 PSVYLSNRDSVFATPEAQELLWVLQAVLAPERESLLRSALATAMFGLTARDLEALN---- 631 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + E + ++ + + + + S +L + G ++ Sbjct: 632 ----LDEQAWDDVVEEFAGYRQLWQQRGVMAMLRALMSARHIAENLLATQGGERRLTDIL 687 Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT---IKRAHSANHNEVRIMTVH 578 + E L ++ ++ ++ L+ ++ + ++ + V+I+T+H Sbjct: 688 ------HISELLQEAAGQLESEHALVRWLVVQIAGPDDGASGQQMRLESDKHLVQIVTIH 741 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE +V+L + + + + ++ Sbjct: 742 KSKGLEYSLVWLPFIAHYRKQEQAFYHDRD-------------SFAAVLDLHNGQESLEL 788 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------- 683 + E RLLYV +TRA + +S T Sbjct: 789 AEAERLAEDLRLLYVALTRAIWHCSLGIAPLSSRRSDKAAETDLHQSALGRLVQNGEPKD 848 Query: 684 ---MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 + + + + + W A + + + R + Sbjct: 849 AAGLEQCLRALCDEHIALYIPELPDAGRWQALADALPALQARDMRRRIVDDWRVTSYSGL 908 Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800 ++ + D+ ++ + + + + + G +H L + + + Sbjct: 909 QQRGHSVAQDLLPRLDIDAAGVGLVASEPALTPHQFPRGASPGTFLHSLFEEM-DFTQPV 967 Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK 854 ++ +N + + L + +L+ P+ ++ D E+ Sbjct: 968 AAEWVQEKLARNG--FDGQWTPVLTQWLEGILQTPLTGAGVSLSQLSDKDKQVELEFYLP 1025 Query: 855 INCPKKDI--------------------------IISGRIDQISISQQNIFIFEYKTHHH 888 I + ++ G ID + ++ +YK++ Sbjct: 1026 IESLLEPQQLDALIRRHDPLSAGCPPLDFRRVSGMLKGFIDLVFRHDGRYYLLDYKSNWL 1085 Query: 889 VPQEIEHIP---------YTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1086 GESHEAYTRPAMEQAMQSHRYDLQYQLYSLALHR 1119 >gi|171059448|ref|YP_001791797.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] gi|170776893|gb|ACB35032.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] Length = 848 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 98/603 (16%), Positives = 191/603 (31%), Gaps = 135/603 (22%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 +D K + + YE+ ++ V+DF +L++ + +L++ Sbjct: 188 IASSKDDGKRPKDLPTDDGQARTMVEIYQAYEDQCQREGVVDFAELMLRSYELMRDHPE- 246 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 IR + HIL+DE QDT+ +Q+ ++ + +FAVGD+ QSI Sbjct: 247 --IREHYQRRFRHILVDEFQDTNRLQYLWLKMFAGTPGALAGREPAA--VFAVGDDDQSI 302 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ + +R + R +I+L ++RS +IL + + + G Sbjct: 303 YAFRGAQVGNMSDFEREYRVR--------QVIKLERNYRSFGNILDSANALIAHNSRRLG 354 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + + G V+++ + +S A Sbjct: 355 KNLRTE---------AGPGEPVRIF--------------------------ESTSDFAEA 379 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 + + + + + + +L R + +I + + Sbjct: 380 QWLLEELQQLHRGG----------MARSETAILYRSNAQSRVIESAL----FNAGMPYRV 425 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465 + IK +A R + DD SF+ ++ P + + R + Sbjct: 426 YGGLRFFERAEIKHALAYLRLTENPNDDTSFLRVVNFPARGIGARSVELLQDAARASGRS 485 Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNE 524 +Y+ + +K + L + + + +L A + + G + Sbjct: 486 LYQSVGALGGAAGTKLAGFTALVDRLRDATRGLTLREIIERMLDASGLINFYRTEKEGQD 545 Query: 525 VIDVLDEFLNFTLRN-----------------------------------------EQNS 543 I+ L+E +N + + Sbjct: 546 RIENLEELVNAAEAFVTIEGFGKDAVALPVDETAPGTIAAPLPGEPEAVAAVDLLPDAET 605 Query: 544 YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L L + L A + V++MTVH+AKGLE VF+ +F H++ Sbjct: 606 GEILSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHSAKGLEFDAVFITGLEEGLFPHEN 665 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 I EE RL+YV +TRA +L Sbjct: 666 SLNS-----------------------------ISAGGNEGLEEERRLMYVAITRARQRL 696 Query: 663 IIC 665 I Sbjct: 697 YIS 699 >gi|85703443|ref|ZP_01034547.1| DNA helicase II, putative [Roseovarius sp. 217] gi|85672371|gb|EAQ27228.1| DNA helicase II, putative [Roseovarius sp. 217] Length = 779 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 110/645 (17%), Positives = 201/645 (31%), Gaps = 117/645 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+ ++ +DF DL+++ + +K D + + + +IL+DE QDT++ Sbjct: 195 ALYRQYQTRLRELNAVDFGDLLLHVVTIFQKHDD---VLRQYQRWFRYILVDEYQDTNVA 251 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 252 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++I L ++RST IL V + + G +LW Sbjct: 296 --GAAVIRLEQNYRSTPHILAAASGVIAGNRDRLGK---------------------ELW 332 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++D + AR I + +M R Sbjct: 333 -------TEAKEGEKVRLIGHWDGEEE-------ARWIGEEVESMRRG-----TRGMRPY 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 ++ +LVR ++ + L I+D MA R ++S Sbjct: 374 SLDEMAILVRASHQMRAFEDRF----LTIGLAYRVIGGPRFYERLEIRDAMAYFRLVVSP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHV 484 DDL+F ++ +P + KI T R + E + G ++ + Sbjct: 430 ADDLAFERIVNTPKRGLGDKAQQKIQVTARQNGVPLVEGARILLEDKGITGKGAAELRRF 489 Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 I + + S + +IL + + E ++ L E + Sbjct: 490 IDGLARWGRMVGDAEFSHIELAEMILDESGYTEMWQLDKTPEAPGRLENLKELVKALEGF 549 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + + ++ +MT+H AKGLE P VFL +F Sbjct: 550 EN--------LQGFLEHVSLIMDNEAGEDGEKITLMTLHAAKGLEFPAVFLPGWEDGLFP 601 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 602 SQRSMDESGVRG--------------------------------LEEERRLAYVGITRAE 629 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + I N + + + + V + Sbjct: 630 EVCTISFAGNRRVYGQWQSQMPSRFIDELPEAHVEVLTPPGLYGGAYGAAAGSGIESRAA 689 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 E + + P S ++ + E ++ T+ Sbjct: 690 EANVYNSPGWRRLQARGGERPMSQPSEARHRVIEAEAISAHTVGE 734 >gi|223040423|ref|ZP_03610697.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267] gi|222878273|gb|EEF13380.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267] Length = 698 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 101/600 (16%), Positives = 202/600 (33%), Gaps = 121/600 (20%) Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137 + NI T + + + K L +D K + Y Sbjct: 128 KGFESNIATPVLASEISNFKNSLLSVED---AAHHAAIEIDEHKFKDGYYARLANIYKLY 184 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 EE N ++DF+DL+ + +L + + + +I Q +I++DE QDT+ +Q+++++ Sbjct: 185 EEYLAANNLVDFDDLLCLSYKILDEDEA---LAREISQRYAYIMVDEYQDTNDLQYKLLK 241 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 L + + VGD+ QSIY + GA+ + +L K + + Sbjct: 242 KLCL----------THENIAVVGDDDQSIYGWRGAKIENILNFKDRF--------KDVKV 283 Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 I L ++RST+ IL +++ N G ST Sbjct: 284 IRLEQNYRSTSQILRAANELIDHNRNRLGKELKSTK------------------------ 319 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377 + + D + ++A I ++G+ + A +I Sbjct: 320 ----EGGEDVALIESDDETMESL-------KVAKRIKKLLGSG----------VAASEIA 358 Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 +L R + + K I + +KD+++ R + ++ DD S Sbjct: 359 ILYRINALSRSLEDGLNKEK----IPYKMVGGVKFYERAEVKDVISYLRLVANENDDFSL 414 Query: 438 VCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE----LI 492 ++ P + + KI +++E I + ++ + E L Sbjct: 415 KRVINRPKRGLGKISLAKIEKIAFENKFSLFEAICALDESDKELSKKIVSALDEFAANLK 474 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQEL 550 + + S ++ + ++ + S G+E + +DEF + S S++E Sbjct: 475 ELKECGSAYELIDKLEAKFGIKKYYESLPDGSERVANIDEFYAMIKDQIKQDPSFSIEEF 534 Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 ++E+ + IM++H +KGLE +F++ F Sbjct: 535 LNEIALQSEQDNI----GGEAISIMSIHASKGLEFEHLFVIGLEEGFFPLLGDGS----- 585 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 EE RL YV +TRA L + ++ Sbjct: 586 --------------------------------DIEEERRLAYVAITRAKKTLGLSYANSR 613 >gi|168463851|ref|ZP_02697768.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633206|gb|EDX51620.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 1181 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 125/874 (14%), Positives = 270/874 (30%), Gaps = 123/874 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + +TV E + + V+ + L S + +L G ++ Sbjct: 634 DENAWDTVVEEFDGYRQIWHK--RGVMPMLRAL------MSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + ++ + + Sbjct: 740 TIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAEES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSF 689 I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 787 IALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGE 846 Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 D + + ++D +T + E + + + Sbjct: 847 PMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + G +H L + + Sbjct: 907 SGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----S 850 + + L ++ + N ++ + E+ Sbjct: 967 PIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLP 1026 Query: 851 VSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHH 888 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1027 IAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWL 1086 Query: 889 VPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1087 GEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|227432451|ref|ZP_03914438.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351772|gb|EEJ42011.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 749 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 177/551 (32%), Gaps = 118/551 (21%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + A Y+ ++ +DF+DLI++T DL K+ + + + + ++ +DE QDT+ Sbjct: 172 VAEVYAAYQAELRRAQSVDFDDLIMSTIDLFKQ---APDVLERYQNQFEYLHVDEYQDTN 228 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ ++ L + R L VGD QSIY + GA +L ++ Sbjct: 229 DAQYTIVNLLAK----------RSRNLAVVGDADQSIYGWRGANMNNILNFEKDYP---- 274 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 + L ++RST +IL + V + S Sbjct: 275 ----DAHTVLLEQNYRSTQNILDAANAVINNNNERIDKS--------------------- 309 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + ++ + A + I + +++ Sbjct: 310 LW-------TENGKGDKITYYRAQTERDE-------ANFVLANIQK---------SRQEK 346 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 D VL R + I + + I D+M+ + Sbjct: 347 NAAYSDFAVLYRTNAQSRGIEEAL----MKANMPYTMVGGHKFYERKEILDIMSYMNLMT 402 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQ 482 + D+ +F ++ P I ++ + Y E + SK Sbjct: 403 NPADNAAFERVVNEPKRGIGATSINRLRDFANRMNLSYMGAIENIELAPEITAKAASKLI 462 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + +H L + + + L + RQ+ + E ++ L+EFL+ T Sbjct: 463 QFAEMMHNLRQQTELLTVTELAELAMTKSVYRQKLAEKNDPESQGRLENLEEFLSVTKEF 522 Query: 540 EQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + + S+ + L V +MT+H AKGLE PVVFLV Sbjct: 523 DSKYNPDDPESVDPMTDFLSSTALMSDLDDFEEGDGAVTLMTLHAAKGLEFPVVFLVGME 582 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F + + EE RL YVG Sbjct: 583 EGIFPLS----------------------------------RAMMDDNQLEEERRLAYVG 608 Query: 655 MTRASDQLIIC 665 +TRA +L + Sbjct: 609 ITRAMKKLYLT 619 >gi|283835413|ref|ZP_06355154.1| exodeoxyribonuclease V, beta subunit [Citrobacter youngae ATCC 29220] gi|291068585|gb|EFE06694.1| exodeoxyribonuclease V, beta subunit [Citrobacter youngae ATCC 29220] Length = 1181 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 131/973 (13%), Positives = 305/973 (31%), Gaps = 136/973 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKY---VSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 +E+ ++ + + +ET K + Q + Sbjct: 215 DETLASRHEQILARINQIKQQWRNAVDGLDGLLETSGIDRRKFNRGNQGKWIEKISAWAQ 274 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 S+ L QE K + ++ D+ T + T A Sbjct: 275 EETQSYQLPDALEKFSQRFLQERTKAGGVTPQH--PLFVAIDELLDQPLTLRDLVITRAL 332 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + K++ L F+D++ + L+ + + I +IDE Q Sbjct: 333 AEIRTAVAEE----KRRRGELGFDDMLSRLDAALR-SESGDALATAIRTRFPVAMIDEFQ 387 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT Q+ + R + + H + L +GD KQ+IY+F GA+ ++ + Sbjct: 388 DTDPQQYRIFRRIWQ--------HQAETALLLIGDPKQAIYAFRGADIFTYMKAR----- 434 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 G+ + L ++RS ++ V+ +FS ++A E + ++ Sbjct: 435 -----GEVSAHYTLDTNWRSAPGMVNSVNTLFSQMDDAFMFREIPFSPVK---------- 479 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN- 365 + + + + P W +S + +A+ A I + + Sbjct: 480 SADKNQSLRFVLHGETQPAMTMWLMEGESCGVGDYQNYMAQVCATQIRDWLKAGHSGDAQ 539 Query: 366 ----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 R ++A DI VLVR R++ L+ L SV ++R + + L ++L Sbjct: 540 LVSGKTSRPVRASDISVLVRSRQEAALVRDALTQL---AIPSVYLSNRDSVFETLEAQEL 596 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481 + + + +++ E + + +L + + + DI + + E ++ + + + + Sbjct: 597 LWVLQAVMTPERENTLRSVLATSMMGLNAQDIEAL----NNDENAWDAVVEEFDGYRQIW 652 Query: 482 --QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT--- 536 + V+ + L + +L G ++ + E L Sbjct: 653 HKRGVMPMLRAL------MTTRQIAENLLATAGGERRLTDIL------HISELLQEAGSQ 700 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 L +E L + I E + + + ++ + V+I+T+H +KGLE P+V+L + Sbjct: 701 LESEHALVRWLSQHILEPDSNASSQQLRLESDKHLVKIVTIHKSKGLEYPLVWLPFITNF 760 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 + + + + ++ + E RLLYV +T Sbjct: 761 RVQDRAFYHDRSSFE-------------AVLDLSDARESVELAEAERLAEDLRLLYVALT 807 Query: 657 RASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK---DEWIA 711 R+ L + +KK + + E + L +I D+ Sbjct: 808 RSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLVQKGEPMDAAGLRGAIEALCCDDIAC 867 Query: 712 YEWSTHHPENTPLEREETI---KQLMDEQKIPKKLFSPI----------KNDINEPYILN 758 + E + + + +++ + D+ ++ Sbjct: 868 LTPNQPDGERWQVAQAASGELSARMLQRTPGDSWRVTSYSGLQQRGHGIAQDLIPRLDID 927 Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818 + + + + + + G +H L + + + Sbjct: 928 AAGVGEVIAESGLTSHQFPRGASPGTFLHSLFEDLDFTQPVDPHWVEEKLALGGYEAHWE 987 Query: 819 KEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCPKK--------------- 860 L ++ + N ++ + + E+ I+ P Sbjct: 988 PVLTQWLNTVLQAPLNETGVSLSQLSAREKQVEMEFYLPISQPLMASRLDALIRQYDPLS 1047 Query: 861 -----------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTH 900 ++ G ID + Q ++ +YK++ + + + Sbjct: 1048 AGCPALDFMQVRGMLKGFIDLVFRHQGRYYLLDYKSNWLGEDSAAYTQQAMASAMQAHRY 1107 Query: 901 IAQLSIYEKILKD 913 Q +Y L Sbjct: 1108 DLQYQLYTLALHR 1120 >gi|332159820|ref|YP_004296397.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607637|emb|CBY29135.1| ATP-dependent DNA helicase UvrD/PcrA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664050|gb|ADZ40694.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862567|emb|CBX72721.1| DNA helicase II [Yersinia enterocolitica W22703] Length = 720 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 119/700 (17%), Positives = 223/700 (31%), Gaps = 144/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D ++L+ + + Sbjct: 90 FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 I + +IL+DE QDT+ IQ+ IR L D + VGD+ Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----------RSNVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + R + I L ++RST++ILT + + + + Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANTLIANNDG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + LW + S F+ L + Sbjct: 303 RMGKN---------------------LW-------TDGAQGEPISLYCAFNELDE----- 329 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 AR + I D +L R + ++ + Sbjct: 330 --ARFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 + IKD +A R I ++ DD +F ++ +P + + I R Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVIRQTARDR 433 Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + A S Q ++ + L H H ++ Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQTDRVIRDSGLWSM 493 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G + ++ L+E +N T + Q+ L L + L + A + Sbjct: 494 YEQEKGEKGQARVENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L +C + Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619 >gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831665|emb|CAN02634.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 816 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 118/720 (16%), Positives = 217/720 (30%), Gaps = 134/720 (18%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-LTQ 76 ++ WP ++ NK + E + + ++ + ++ + F TQ Sbjct: 78 REAWPSQILAITFTNKAAAEMRERVESLLGQASEGMWISTFHSACVRILRREAEAFGFTQ 137 Query: 77 KFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 FT + ++ + K+ + + K+++ + F T A Sbjct: 138 NFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGRISKLKNELSDADTFARTANFNDPA 197 Query: 131 KY----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + Y + DF+DLI T L + + + H+L+DE Q Sbjct: 198 EAMFVEIFRQYTRSLASANAFDFDDLIGQTVYLFR---AFPKVAALYQRRFRHVLVDEYQ 254 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS-----------PRTLFAVGDEKQSIYSFHGAEPK 235 DT+ Q+ +IR LT + +L VGD QSIY+F GA+ + Sbjct: 255 DTNHAQYSLIRELTRAVAPEDVPVDTRMSTNGMGGIDGASLTVVGDSDQSIYAFRGADIR 314 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + +R + ++ L ++RST +ILT + V S + + Sbjct: 315 NITEFERDFPQS--------KVVLLEQNYRSTQNILTAANAVISNNFDRKDKK------- 359 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 LW + S A+ +A I Sbjct: 360 --------------LWTSIGDGDKIVGF--------------TGYSGHDEAQFVADEIQK 391 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + T +I V R T + + + + Sbjct: 392 LHEEGTA----------YSEIAVFYRTNAQTRALEEIL----IRSAVPYRIMGGTKFYER 437 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA 474 IKD MA + + D L+ +L +P + T E +++ + Sbjct: 438 AEIKDAMAYLVAVANPADVLALRRILNTPKRGIGPATETALANFAESHGVTFREAMRRAS 497 Query: 475 N-CGISKFQHVIKYIHELIHIA----------QFCSPHDFFTLILGAKKGRQQFISRFGN 523 K I + ++ S D T +L Q + Sbjct: 498 ELGLGPKVTQAILALSRMLDEVALLLDPDRPEGRTSVGDLVTTLLEKSGLVQALRASKDA 557 Query: 524 E---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + + ++E + T +N+ L + ++E+ + V +MT+HT Sbjct: 558 QDEARAENVEELVAVTKEFSRNNPEGQLVDFLTEVSLVAAAD--ELDDSSGTVSLMTLHT 615 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE VFL + H+ P Sbjct: 616 AKGLEYDSVFLTGVEEDLLPHRMSANEPGGP----------------------------- 646 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 E RL YVG+TRA +L I + + N + + K+ Sbjct: 647 -----AEERRLFYVGITRARRRLFISLAMTRAQFGEVNVAMPSRYLQEIPAELIDWKQSP 701 >gi|215402750|ref|ZP_03414931.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis 02_1987] gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987] gi|289685207|gb|EFD52695.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987] Length = 770 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 99/634 (15%), Positives = 178/634 (28%), Gaps = 102/634 (16%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + L ++ Sbjct: 79 AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + + + Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L N P L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL+ + V + + Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + I+D++A R Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + A Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ EL + +L R++ + + +D L+E ++ Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542 Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581 + L LE+ H V +MT+HTAK Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 GLE PVVF+ +F H S Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPTELSEERG 636 >gi|260869499|ref|YP_003235901.1| exonuclease V, beta subunit RecB [Escherichia coli O111:H- str. 11128] gi|257765855|dbj|BAI37350.1| exonuclease V, beta subunit RecB [Escherichia coli O111:H- str. 11128] Length = 1180 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 ++ + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E +++ + Sbjct: 847 PQDAAGLCTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARMLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|116334214|ref|YP_795741.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367] gi|116099561|gb|ABJ64710.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis ATCC 367] Length = 750 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 105/748 (14%), Positives = 208/748 (27%), Gaps = 140/748 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L ++ + + + V + ++ L Sbjct: 30 GAGSGKTRVLTHRVAYLIEHNNVMPWRILAITFTNKAAKEMRERVIKLLGPDGNDVWVST 89 Query: 66 FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKI 110 F L F Q+ +I + + +++ D+K+ + Sbjct: 90 FHALCVRILRRDADKLGYNRAFTIADPGEQRTLIKRVLQQQNLDIKKFDPRSVLGAISNA 149 Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168 ++ T M + T + Y+ + N +DF+DLI+ T L + A Sbjct: 150 KNALQTPAMMREAAGNPFETTVATVYESYQRELQANQAMDFDDLIMLTIKLFNQD---AD 206 Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228 + + +I +DE QDT+ Q+ ++ L + L VGD QSIY Sbjct: 207 VLGYYQDKFQYIHVDEYQDTNDAQYTLVNLLAK----------KHGNLCVVGDGDQSIYG 256 Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288 + GA + +L + + L ++RST IL + V N + Sbjct: 257 WRGANMENILNFEHDYP--------DAHVTLLEQNYRSTKTILRAANDVIQRNVNRKKK- 307 Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348 LW + S+ + + A Sbjct: 308 --------------------DLW-------TDNAEGEPISYYRGQNENDE-------AHY 333 Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 + I + D +L R + +I I Sbjct: 334 VVAKIQEEREQNHH---------DYGDFAILYRTNAQSRVIEETL----VKANIPYTMVG 380 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-- 466 D I+D++A + + D +S ++ P + K+ + Sbjct: 381 GHKFYDRKEIRDVLAYLTLVANPADSMSLERIINEPKRGIGATSVEKLRDFAEMNDWTEL 440 Query: 467 -YEYIQKFANCGISKFQHVIKY----IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 A ++ + ++ + + A S D + +L + Sbjct: 441 EATQNISLATTLSARVRTAMEKFGLTLKHVQDRAATMSVSDMTSELLDQTGYMASLKASK 500 Query: 522 GNEVI---DVLDEFLNFTLRN--------EQNSYSSLQELISELEQYPPTIKRAHSANHN 570 E + ++EFL+ T + + L E +++L Sbjct: 501 NLEAETRIENIEEFLSVTQKFDDDWDNADHDETEDRLVEFLADLALVSAQD--DVEEEPA 558 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 EV +MT+H AKGLE PV+FL+ +F Sbjct: 559 EVTLMTLHAAKGLEFPVIFLMGLEEGIFPLSRAMLEDDELEEERRL-------------- 604 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690 YVG+TRA ++L + + + V + Sbjct: 605 --------------------AYVGITRAQEKLYLTNAYSRMLYGRRQTNPQSRFVTEIAP 644 Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHH 718 + + + + Sbjct: 645 ELLHLDYSETKSGLTPSRRDVPFARRTA 672 >gi|213418920|ref|ZP_03351986.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 1068 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 193 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 251 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 252 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 303 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 304 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 353 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 354 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 403 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 404 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 461 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 462 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 518 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 519 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 570 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 571 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 624 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 625 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 671 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 672 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 731 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 732 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 791 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 792 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 851 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 852 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 911 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 912 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 971 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 972 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1007 >gi|227874195|ref|ZP_03992397.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268] gi|227839950|gb|EEJ50378.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268] Length = 793 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 112/702 (15%), Positives = 211/702 (30%), Gaps = 152/702 (21%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQTLQQASQTQC 61 E LI ++ L +E G K AQ ++ Sbjct: 18 GEGPLLILAGA--GSGKTRVLTHRIAYLILEKGISPYQILAITFTNKAAQEMRDRVNQLL 75 Query: 62 IEERFSLLSSFFLTQ-KFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIKIRDRFNTYK 118 E + + S F + ++ I + D ++ + F +++ K Sbjct: 76 PERQGEIWVSTFHSMCLRILRREIGNLGYDSDFSIYDTDDQKTVMRQVFKELQIDSKMLK 135 Query: 119 MFKSTLASLTL----------------------AKYLNAHYEEAKKKNCVLDFEDLIINT 156 A + + YEE K+N LDF+DL++ Sbjct: 136 ERLVLSALSQVKNQGRSVSDYLLEDPEDFLDGKIRACIRLYEEKLKQNNALDFDDLLLRC 195 Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216 +L +K + K + +IL+DE QDT+ +Q+ ++ L + + + + Sbjct: 196 KELFEKFPA---VLEKYQERFRYILVDEYQDTNDVQFHLVYLLAKKY----------QNI 242 Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276 VGD+ QSIY F GA + +L + +++L ++RSTA IL + + Sbjct: 243 CVVGDDDQSIYRFRGANVENILSFESHFPN--------CKVVKLEQNYRSTAPILDLANV 294 Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336 V + ++ + LW Sbjct: 295 VIAENQHRKQKK---------------------LWTAEKEGLKVSFQ------------- 320 Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396 + SA A + I + KD VL R + L+ Sbjct: 321 -EYESAKEEAAAVIRGIRD-------------AGWSYKDQAVLYRTNAQSRLLEEQ---- 362 Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456 + I IKD+++ + +++++DD++ ++ P E + K+ Sbjct: 363 CIHWNIPYQIVGGVNFYQRKEIKDILSYMKILVNKKDDVALRRIINVPKRGIGEASLLKL 422 Query: 457 CTQRHETETV---YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 A K ++ E++ + IL + Sbjct: 423 QQYGESLGGFSLVESLPFAKAAGLSGKALSMVGSFQEMLESWKDVELSALIDRILQDTEY 482 Query: 514 RQQFISRFGNEVI---DVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSAN 568 + + E + + E E SL + E+ + + Sbjct: 483 EKDLQAEGAIEAESRMENIQELQGKLQSYIEENGDEGSLSAFLEEVSLLSDLDRSDLTE- 541 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 +++ +MT+H AKGLE PVV+LV +F Sbjct: 542 -DKITLMTLHGAKGLEFPVVYLVGLNEGLFPSAQSMFTPEEREEERR------------- 587 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 L YVG+TRA +L + + Sbjct: 588 ---------------------LFYVGITRAEKELYLTAGRDR 608 >gi|319947958|ref|ZP_08022138.1| UvrD/REP helicase [Dietzia cinnamea P4] gi|319438386|gb|EFV93326.1| UvrD/REP helicase [Dietzia cinnamea P4] Length = 1140 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 139/912 (15%), Positives = 286/912 (31%), Gaps = 93/912 (10%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 LQ A + ++ L L I + N ++ + ++ + + Sbjct: 242 ADLQHAVDDPTVTPSWTDLLGSPLKAGN------IGKSTNWGGAEVVKDIRAEIRDLSSV 295 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 ++ L + + + ++++ L F D ++ +LL+ + +R Sbjct: 296 CEKILVDHWLPRITLVLDALIPVVRRHADERRRHGTLQFHDQLVLARELLRDSE----VR 351 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 ++ ILIDE QDT IQ ++ LT + + P LF VGD KQSIY F Sbjct: 352 ARVRARYLRILIDEFQDTDPIQLDLAELLTSG---PGGSGTEPGRLFTVGDPKQSIYRFR 408 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 A+ LR + + Q + L +FR + +L V+ VFS A + Sbjct: 409 RADITTYLRAR----GGSATGTQGPDVERLSTNFRCSRPVLEWVNDVFSEVLTAADGIQP 464 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + R + V + ++ A +A Sbjct: 465 EYRALEPAPDRPPHDPSHGPRPFVFRSEEVPE-------HCPPEANETTRRHWAEASDVA 517 Query: 351 YTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 I+ I NG+ ++ DI +L+ R P++ + I Sbjct: 518 RVIATAIREGWTHESKNGEHTPLRLGDIAILLPSRGALPMLETCL----DHAGIDFRTEA 573 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 I+ I+DL+ R + + D+ S V L+SPLF +DD+ + Sbjct: 574 SSIVYGTPEIRDLLLAVRAVANPADEASLVGALRSPLFGCGDDDLLRWRAGGGGWVLTAP 633 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528 A+ +++ + + P + ++ + + + Sbjct: 634 APDDLASSPVAEGMRYLSALGR-----STRRPGELLERLVHDRMVFESVAESPRRRDLWR 688 Query: 529 LDEF-LNFTLRNEQNSYS----SLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVH 578 F + + E+++ L+E R A + VRI T+H Sbjct: 689 RIRFVIEHAWQWEESASDPARADLREYADWAMALTAEDARVPEAAIPEIGVDAVRITTIH 748 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V + + + + + + DDP P + R+ Sbjct: 749 ASKGLEYPMVIVAGMSRG-WPNSNERLLWTE----DDPPRPAVSFSAAVRDPAFDSAAGL 803 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 K + E RLLYV TRA +L + + + K W ++ + + Sbjct: 804 EKLHARAERIRLLYVATTRAESRLAVSGQYAATQKGKPRSDVWASLLGSVIEEPDAPALV 863 Query: 699 KLTNSINKD-------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739 + ++ + + A T + + + ++ + Sbjct: 864 EYGENLLEAAAAPEVDVPDEAGWTERTRQIAARSAERAGWSATRIVHPDAVDATPVDEDV 923 Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI------ 793 ++ P + P+ + + G +H L + Sbjct: 924 ERQPSLPQQLAAALRERFAPAPARPEELPPRPRYTPIASGPDVGTAVHHLAEHTDLGRLL 983 Query: 794 -----FTLPEHKRKNFITSYCTKNAKLW------PAKEYKNLLLSITRLLENPMMTTAMS 842 + + ++ L + + A S Sbjct: 984 GPAADPDSAMADWDRWAADQLVALGLGGGLQGSRNPEAVAEMVSVARTALTSEPVRRAAS 1043 Query: 843 CDSYSEVSVSGKINCPKKDII-ISGRIDQISISQQN-IFIFEYKTH-HHVPQEIEHIPYT 899 ++E+ +G ++ + + G +D + + I +YKT ++ Sbjct: 1044 RTHWAELPAAGALSTADGARVAVDGVVDLVVQEDDGSLSIIDYKTDVAVTTGTVDE---- 1099 Query: 900 HIAQLSIYEKIL 911 ++ QL Y +L Sbjct: 1100 YLLQLCAYADLL 1111 >gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] Length = 678 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 97/597 (16%), Positives = 194/597 (32%), Gaps = 120/597 (20%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + Y+ A K +DF+DLI+ T LL+ + + K Q ++++DE QDT Sbjct: 167 VVATIYPRYQRALKAFNAVDFDDLIMLTVRLLQDKPA---VLEKYRQRFRYLMVDEYQDT 223 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ ++R L E R L VGD+ QSIY + GA+ +L ++ Sbjct: 224 NAAQYRLLRLLAE----------GHRNLCVVGDDDQSIYGWRGADLGNILDFEKDFP--- 270 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +I L ++RST +ILT + V + Sbjct: 271 -----GTMVIRLEQNYRSTGNILTAANAVIRNNLKRK----------------------- 302 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + + + + + D + AR + I + K Sbjct: 303 -----IKALWTADGPGDKIDYLLCEDDEDE-------ARVVVERI---------MAERFK 341 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + +D +L R + R + V D +KD++A R + Sbjct: 342 ARLSYRDFAILFRTNVQSRAFEEQLR----YQDVPYVLIGGQQFFDRKEVKDVLAYFRVL 397 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKF 481 L+ D+++ + +L +P + ++ +++ ++ + + Sbjct: 398 LNPRDEVNLLRILNTPKRGIGDTSADRLIRFSAEHDIPLWQVLKNPAEVEGLGDKVMESI 457 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFT 536 + + + D +L + + + + E +N Sbjct: 458 ATFVDLMQNFRRRFRVGQLSDTGRELLQELRFEDDLLRTAQDPDKARRRMANVAEVINAM 517 Query: 537 LRNEQNSY-SSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLV 591 EQ +L+ + ++ + + V +M++H++KGLE P VFLV Sbjct: 518 ASYEQREVQPTLEGFLDKVSLLDRDEPPRQDKDAKLQRDAVVLMSLHSSKGLEFPCVFLV 577 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 ++ HK K + EE RL Sbjct: 578 GMEDELLPHKKSKGANS----------------------------------NIEEERRLC 603 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 YVG+TRA +L + + R+ + + + ++E Sbjct: 604 YVGITRAQKKLTLLGAARRKKFGVMQLRSPSCFLEEIPDEVLHSAASDAPTATTEEE 660 >gi|148550460|ref|YP_001270562.1| DNA-dependent helicase II [Pseudomonas putida F1] gi|148514518|gb|ABQ81378.1| ATP-dependent DNA helicase UvrD [Pseudomonas putida F1] gi|313496365|gb|ADR57731.1| UvrD [Pseudomonas putida BIRD-1] Length = 728 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 117/694 (16%), Positives = 224/694 (32%), Gaps = 132/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + ++ + L + Sbjct: 33 GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109 F + L F Q+ +I + + + D ++ + FI + Sbjct: 93 FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFINGQ 152 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + L + + YE+A ++ V+DF +L++ DL + + Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ +Q+ +R L +L AVGD+ QSIY + Sbjct: 210 LEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAR----------GGDSLMAVGDDDQSIYGW 259 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + +I L ++RST IL + + + G Sbjct: 260 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 309 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + + + ++ + AR + Sbjct: 310 -------------------ELW-------TDMGEGEPLTLYAAYNEHDE-------ARYV 336 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 TI +++ +I +L R + ++ +I Sbjct: 337 VETIESLVKQGNAR----------NEIAILYRSNAQSRVLEEAL----LRERIPYRIYGG 382 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IK+ MA R I + +D + ++ P E + I RH +++E Sbjct: 383 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWE 442 Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519 + + K I+ I L H + Q+ Sbjct: 443 AMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLITYHQEEKG 502 Query: 520 RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G ++ L+E ++ E + L L + L + + +++MT+ Sbjct: 503 EKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTL 562 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VFLV +F HK + Sbjct: 563 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 593 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA QL++ Sbjct: 594 -----RLEEERRLAYVGITRAMRQLVMTYAETRR 622 >gi|238060999|ref|ZP_04605708.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149] gi|237882810|gb|EEP71638.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149] Length = 799 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 98/614 (15%), Positives = 183/614 (29%), Gaps = 118/614 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 Y+ ++ LDF+DLI+ T L + + + H+L+DE QD Sbjct: 198 RALAEAYTLYQRRLREAHALDFDDLIMTTVHLFQSHPH---VAESYRRRFRHVLVDEYQD 254 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +I+ L + L VGD QSIY+F GA + +L +R Sbjct: 255 TNHAQYTLIKELVSGTEGIEPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF--- 306 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL + V + + S Sbjct: 307 -----TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS---------------- 345 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 D+ Q + + + A + + ++ Sbjct: 346 -----------DAGAGEQIVGYVA--------DTEHAEADWVGREVDRLVDEAE------ 380 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D+ V R + + + + + ++D +A R Sbjct: 381 ---ARPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLRA 433 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-------NCGISK 480 +++ +D +S +L +P E + + + A + Sbjct: 434 VVNDDDTVSLRRILNTPRRGIGERAEACVEALSSRDRISFGAALRRAGDAPGISTRAANG 493 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 + + +A+ +P + +L + + +D L E ++ Sbjct: 494 IGDFVALLDGARELAETGTPEEVLEALLTRSGYLTELEESLDPQDAGRVDNLQELVSVAR 553 Query: 538 RN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587 E+ +++ + + L I + V +MT+HTAKGLE PV Sbjct: 554 EYTERIEALGEEGDRATVAGFLEQVALVADADQIPADDPDHQGVVTLMTLHTAKGLEFPV 613 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 VFL VF H L EE Sbjct: 614 VFLTGLEDGVFPH----------------------------------LRSLGDTRELEEE 639 Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YVG+TRA +L + + S + + + R ++ + T + Sbjct: 640 RRLAYVGITRARQRLYLSRAVTRSAWGQPAYNPPSRFLEELPPELVRWERTEGTYTSWGG 699 Query: 708 EWIAYEWSTHHPEN 721 Sbjct: 700 GGGGVGGRADRAPR 713 >gi|313816227|gb|EFS53941.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1] gi|315098848|gb|EFT70824.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2] Length = 1072 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 148/995 (14%), Positives = 297/995 (29%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRGHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 RL YV +TRA ++L++ H K S Y ++ + + + Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYAVLLADMLGTVWPDFGERPDDDIQAG 797 Query: 709 WIAYEWS--------------------THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 ++ + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + + +V + A I T Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|308051416|ref|YP_003914982.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799] gi|307633606|gb|ADN77908.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799] Length = 721 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 105/582 (18%), Positives = 188/582 (32%), Gaps = 118/582 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + Y+EA + ++DF +L++ ++L LK+ + Q HIL+DE QDT+ Sbjct: 172 QIYQAYQEACDRAGLVDFAELLLRAHELWLKQPH----LLRHYQQRFRHILVDEFQDTNA 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA + + + Sbjct: 228 IQYAWIRMLASD----------GSHIMIVGDDDQSIYGWRGARVENLQKFLDDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST+ IL+ + + + G +L Sbjct: 273 ---GAQTIRLEQNYRSTSTILSAANALIAHNAERMGK---------------------EL 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + S F+ L + AR I I + Sbjct: 309 W-------TEGATGEPISLYCAFNELEE-------ARYIVGRIKQHLDGGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D +L R + ++ ++ + IKD + R I + Sbjct: 348 ---SDCAILYRSNAQSRVLEEAL----LHQSVAYRIYGGLRFFERQEIKDALGYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R E T++ Q+ + S Sbjct: 401 RHDDAAFERIVNTPTRGIGDRTLDIVRATARAEGITLWRACQRLLSERGLAGRAASAVAA 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 I I +L ++ R + + G + + L+E + E Sbjct: 461 FISLIDQLEEEVMDAPLKRQADHVINHSGLRAMYEAEKGEKAEARIENLNELVTAAGSFE 520 Query: 541 Q-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + + EL + L + N + V++MT+H+AKGLE P+VF+ +F Sbjct: 521 RPEDSEEMSELNAFLAHAALEAGEGQADDNDDAVQLMTLHSAKGLEFPLVFMCGVEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVGMTRA Sbjct: 581 PSQMALDEG----------------------------------DRLEEERRLCYVGMTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 +L I + + + + ++ Sbjct: 607 MQKLYITYAESRRLYGRETFAKASRFIREIPQEHLDEVRLTT 648 >gi|168236044|ref|ZP_02661102.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736312|ref|YP_002115943.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711814|gb|ACF91035.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290868|gb|EDY30222.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 1181 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 273/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQISAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPTMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTGREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|148653621|ref|YP_001280714.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1] gi|148572705|gb|ABQ94764.1| ATP-dependent DNA helicase Rep [Psychrobacter sp. PRwf-1] Length = 679 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 108/634 (17%), Positives = 207/634 (32%), Gaps = 126/634 (19%) Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + N+ E + + + +++ I+ T + + L A YE Sbjct: 124 RDNLSGAESRELVGKAIKFISDWKNDLIEPDKAMETLDDPEDM-----IFATLYALYERN 178 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + +DF+DLI+ +L++ +R K I ++L+DE QDT+ Q+E+I+ + Sbjct: 179 LRAYNAVDFDDLIVLPAKILRENP---QLRDKWQNRIRYLLVDEYQDTNTAQYELIKLIV 235 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 VGD+ QSIY++ GA P+ + K K +I+L Sbjct: 236 G----------PTGKFTVVGDDDQSIYAWRGARPENMALLKEDFPK--------LKVIKL 277 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST IL + V E+ + S G + + ++D Sbjct: 278 EQNYRSTNRILNAANTVIMNNEHLFEKALWSDK------------GQGEKIRIINCRNDD 325 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + R+A I ++ + + + VL Sbjct: 326 DES-----------------------ERVAKEI---------ITHKLRHGNEWEQYAVLY 353 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R ++ R L+ I + IKD+M R IL+ EDD +F+ + Sbjct: 354 RSNFQARMLEAQLRQLQ----IPYKLSGGQSFFARSEIKDVMGYLRLILNPEDDSAFLRI 409 Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492 + +P + K+ + + ++ S + +I Sbjct: 410 VNTPKRGLGPATLEKLGLFSQEHSISLLASCTHGGLSHVLPIKAYSTLKEFGDFIEHYTR 469 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543 + Q P ++ S +D ++ R E + Sbjct: 470 ELDQHPDPVPLVRQMIDETGYIDFVRSDSKTPHQEKGRLDNIEVLYTSIQALINRAEDDD 529 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++ +I +L ++ N N+V +MT+H AKGLE V+++ ++ H Sbjct: 530 DKTIDAVIRKLVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDFVYIMGLEEELLPH--- 586 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + T EE RL+YVG+TRA +L Sbjct: 587 --------------------------------RNSIIAETIEEERRLMYVGITRARRELT 614 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 + + + T + + Sbjct: 615 LTLAAQRRGGGQMRTTTQSRFLEELPEEHLDWPA 648 >gi|325144733|gb|EGC67028.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240013] Length = 671 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 111/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + +++ R ++ EL + Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|265993865|ref|ZP_06106422.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] gi|262764846|gb|EEZ10767.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] Length = 424 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 123/418 (29%), Positives = 189/418 (45%), Gaps = 25/418 (5%) Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 +Q + LE P IKR +EVRIMTVH AKGLE VVFLVD GS V++ K+ Sbjct: 1 MQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVWTGSRAPKL 60 Query: 607 HIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 D P + +W P S + + I+ LK +EEY RLLYVGMTRA D+LII Sbjct: 61 IPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLII 120 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 C + + + TW+ +V D+ +T A P + Sbjct: 121 CGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYRKTPRSFIE 169 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS--------- 775 EE ++P P+K + P L PS + + E L Sbjct: 170 INEEDQAGATSLPQLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDLSSPVLQPG 229 Query: 776 ---DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832 RG IH LLQ + + KR++ Y + A WP E S+ +L Sbjct: 230 TGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKAWQSVHAIL 289 Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 ++P + S EV+V G I+ +D +SG+ID+IS+ + + I +YKT+ P+ Sbjct: 290 DDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYKTNRPPPKT 349 Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 +E +P + AQL++Y ++L+ YP + + L++ P + ++P L+ A + Sbjct: 350 LEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAMGALKDT 407 >gi|168820281|ref|ZP_02832281.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342959|gb|EDZ29723.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087418|emb|CBY97183.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1181 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 125/874 (14%), Positives = 270/874 (30%), Gaps = 123/874 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + +TV E + + V+ + L S + +L G ++ Sbjct: 634 DENAWDTVVEEFDGYRQIWHK--RGVMPMLRAL------MSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + ++ + + Sbjct: 740 TIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAEES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSF 689 I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 787 IALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGE 846 Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 D + + ++D +T + E + + + Sbjct: 847 PMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + G +H L + + Sbjct: 907 SGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----S 850 + + L ++ + N ++ + E+ Sbjct: 967 PINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLP 1026 Query: 851 VSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHH 888 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1027 IAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWL 1086 Query: 889 VPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1087 GEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|307730434|ref|YP_003907658.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] gi|307584969|gb|ADN58367.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] Length = 787 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 111/662 (16%), Positives = 206/662 (31%), Gaps = 159/662 (24%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + F +L + + + K ++ + +N K Q ++ Sbjct: 96 LRAHHRDAGLPATFQILDTA---DQLSAIKRLM-KGLNIDDEKYPA--KNLQYFINNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + K +T L Y++ ++ V+DF +L++ +LL +R Sbjct: 150 QGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F GA Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKLLAGQTNA----------IFAVGDDDQSIYAFRGA 256 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + R +I+L ++RS IL +++ + G + + Sbjct: 257 NVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLRTD 308 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V+++ + ++ + A I Sbjct: 309 ---------AGHGEPVRVY--------------------------ESATDTQEAGWIVEE 333 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I +I T T +I VL R + I + I+ Sbjct: 334 IKALINTGT----------SRSEIAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGLRF 379 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + +K +A R I + DD +F ++ P I ++ R ++ I Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAAIP 439 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530 A S I ++ Q S + ++ A + + R G + ++ L Sbjct: 440 YVAGKAGSSLAAFANLIGKMRAETQQMSLPETVEYVVRASGLADFYQNEREGQDRLENLQ 499 Query: 531 EFLNFTLRNEQNS----------------------------------------------Y 544 E +N Sbjct: 500 ELVNAAAAFVSEEGYGMDTPARSIPLRPGASAAPELAVATDDPNTVVLDAPGIAEPAQNP 559 Query: 545 SSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++ L L A V++MTVH AKGLE VF+ +F H++ Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL+YV +TRA ++L Sbjct: 620 ----------------------------------AMESDGLEEERRLMYVAITRAKERLY 645 Query: 664 IC 665 + Sbjct: 646 LS 647 >gi|224584782|ref|YP_002638580.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469309|gb|ACN47139.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 1162 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 122/876 (13%), Positives = 271/876 (30%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 287 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 345 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 346 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 397 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 398 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 447 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + + ++ V + P W +S S Sbjct: 448 TFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 497 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 498 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 555 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 556 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 612 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 613 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 664 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 665 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 718 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 719 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 765 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 766 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 825 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 826 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 885 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 886 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 945 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 946 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1005 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1006 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1065 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1066 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1101 >gi|298368953|ref|ZP_06980271.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str. F0314] gi|298282956|gb|EFI24443.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str. F0314] Length = 688 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE L K+Q + ++ T + T A A Y+E + +DF+DLI Sbjct: 144 KEALFKAQHQISLWKNDLKTPEDVLQTASNAWEEQIARAYASYQETLQSYQAVDFDDLIR 203 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 204 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 250 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 251 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 302 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q++ Sbjct: 303 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 335 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 A + I ++G D Q D VL R + Sbjct: 336 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 378 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R ++ + D IKD+++ R + + DD +F+ + +P + Sbjct: 379 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 434 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ + Sbjct: 435 LGKLNTYAHEHECSLYEAAQTEEALALLNNTNRQHLQAFMDMFGSYRAKAETSEAGELIN 494 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + + R + ++ EL + Sbjct: 495 GLLKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQDGKNIIELAQTVALMTLLE 554 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V++ T+H +KGLE P VFLV + H Sbjct: 555 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 593 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 594 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 638 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 639 SRFIDEMPQED 649 >gi|331664379|ref|ZP_08365285.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA143] gi|331058310|gb|EGI30291.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA143] Length = 1120 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 246 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 304 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 305 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 356 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 357 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 406 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 407 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPTMKMWLMEGESCGVGDYQS 456 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 457 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 516 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 517 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 573 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 574 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 625 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 626 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 679 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 680 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 726 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 727 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 786 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 787 PQDAAGLRTCIEALCDDDIAWQTAQMGDNQPWQVNDAITAELNARTLQRLPGDNWRVTSY 846 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 847 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 906 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 907 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 963 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 964 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1023 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1024 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1060 >gi|307131099|ref|YP_003883115.1| exonuclease V (RecBCD complex), subunit beta [Dickeya dadantii 3937] gi|306528628|gb|ADM98558.1| exonuclease V (RecBCD complex), beta subunit [Dickeya dadantii 3937] Length = 1224 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 141/1048 (13%), Positives = 292/1048 (27%), Gaps = 169/1048 (16%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-----AQTLQQASQTQCI 62 K WP ++ D+ + + + LQ + + Sbjct: 229 EEKTRRLSALKAPWPQWCGELRDLLNAAVAQKKADGRKLQARYFEPWLDKLQHWATSDEA 288 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 T + Q + + +E + ++ + + Sbjct: 289 MLDI-----------GTGWTRLTPQGLRECWKVPEEAPQHPALTAMETLAQQLSELPEPR 337 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 + ++++ + ++ + F+DL+ + L+ D + +I ++ +I Sbjct: 338 SQLLRHACRWVSQRFRHEQESRAQMGFQDLLTRLDAALRG-DNGERLAQRIRRQFPVAMI 396 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT +Q+ + +L + + L +GD KQ+IY+F GA+ LR +R Sbjct: 397 DEFQDTDPLQYRIFDTLYR-----VADNDPQQGLILIGDPKQAIYAFRGADIYTYLRARR 451 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG-------LSEDSTTTI 295 L +FRST ++ V++VF EN D + Sbjct: 452 D---------TDGRHYTLGTNFRSTQAMVGAVNQVFMQAENRADGAGAFLFRQPDGDNPV 502 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTIS 354 + G + W D WT D L +A A + Sbjct: 503 PFLPVKAN--GRDEAWVL-----DGADAAALTCWTLATDEPLSSAEYRQRMAAGCAREMV 555 Query: 355 NMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 ++ R ++ D+ VLV ++ + SV +D Sbjct: 556 RLLQLGGQGRAGFAVPGQPLRPVKPGDMAVLVNTGREAMAVRAQLSA---RGVRSVYLSD 612 Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468 R + D +L E+D L +P S + ++ E Sbjct: 613 RESVFDSPQAGELHCWLAACADPENDRLLRAALATPALGLSWQALDRLNHDEQE------ 666 Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528 + +Q + L + + D +L A R Sbjct: 667 --WERRVMQFDHYQRCWQQQGVLPMLRRLMWDFDVPRRLLAADNTRA-LTDML------H 717 Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYP---PTIKRAHSANHNEVRIMTVHTAKGLES 585 L E L + ++ ++ L + + T+K ++ + V+++TVH +KGLE Sbjct: 718 LSELLQQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVTVHKSKGLEY 777 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 P+VFL + + + I + ++ Sbjct: 778 PLVFLPFACAFRTVSQRDVPLKFHDDDGKPRLELI----------ASDEAVQRADHERLG 827 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---------------------WYDM 684 E R YV +TRA + + EK S Sbjct: 828 EDLRKFYVALTRARYAMWLGMAPLKELEKSSPGYLLGAGEPLEPAQLTQQLSTWCGADSQ 887 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + D+ V + +L E + +H T + + + Sbjct: 888 IAPLPETDDAVYRAELHTPALGQEPPLPDMRSHRWRITSYSGLQLAPEGHYREFREPAAG 947 Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLS---DNQTFNRGLIIHKLLQVIFTLP---- 797 + + + + L S L + G +H LL+ Sbjct: 948 DEPEVQSAKQETFSEPQASAERLPPLPSGLDMYSFPRGAAPGSFLHGLLEWAGKEGFAAL 1007 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----------MTTAMSCDSY 846 R + + + L + LL P+ + Sbjct: 1008 AANRPRVEDQVARRCNRQGWTQWIPMLTDWLMTLLSQPLALPTQPGSAVSLARLTQYQVE 1067 Query: 847 SEVSVS-----------------------GKINCPKKDIIISGRIDQISISQQNIFIFEY 883 E + + + + ++ G ID + Q ++ +Y Sbjct: 1068 MEFWFALNQVDTQILDQQVRAATLAGEPRAALMREQLNGMLKGFIDLVFEHQGRYYVLDY 1127 Query: 884 KTHHHVPQEIE---------HIPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI- 925 K++ + + + + QL++Y L ++ + L Sbjct: 1128 KSNWLGADAADYDLPRMASAMLEHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGALYL 1187 Query: 926 YVSEPKV------FIIPQNKLNKAFAEI 947 ++ + P L +A + Sbjct: 1188 FLRGSQAPGGGVCAERPDRSLIEALDRL 1215 >gi|197286155|ref|YP_002152027.1| exonuclease V subunit beta [Proteus mirabilis HI4320] gi|194683642|emb|CAR44563.1| exodeoxyribonuclease V beta chain [Proteus mirabilis HI4320] Length = 1212 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 139/985 (14%), Positives = 301/985 (30%), Gaps = 165/985 (16%) Query: 62 IEERFSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118 + + ++ T+ + +++K+ E + + T + Sbjct: 271 WIDEITAWATPLETKSYQLPDCLSRFSQATLHEKTTKGAAPEHALFAEIELLCQQSLTLR 330 Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178 A + + + E K + L F+DL+ + L++ + + I Q Sbjct: 331 DVIIANAIPEIRQGI----ENEKMRRGELGFDDLLTRLDKALQR-EGGEALADAIRQRYP 385 Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 +IDE QDT Q+ + ++ + L +GD KQ+IY+F GA+ + Sbjct: 386 VAMIDEFQDTDPQQYRIFDTIYGEHTESG--------LLFIGDPKQAIYAFRGADIFTYI 437 Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298 R ++ Q L ++RS +++ V+K+F + + Sbjct: 438 RARQ----------QTDHHYTLNTNWRSAPGMVSAVNKLFLRSKTPFLFDHIPFIEVN-- 485 Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358 + + + + + + W + +SL + ++A + A I + + Sbjct: 486 --------SAEKNQHMKFIYQQKTVAPLNFWLAEGESLSTGNYEQLMASQCAMQIRDWLS 537 Query: 359 TD-----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + KR + + DI+VLVR R++ LI L SV ++R + Sbjct: 538 AGDNQQAWLIEQDNKRAVTSADIVVLVRSRREALLIRDALDLLSIQ---SVFLSNRESVF 594 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473 + KDL+ L + +++ E + L S LF F+ I ++ E + Sbjct: 595 ETNEAKDLLWLLQAVVTPEKERVLRASLASALFGFNAQQIDELNQDEQRWNRYVEQFSDY 654 Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533 + L + + + +L ++ G ++ + E L Sbjct: 655 FVLWQKR--------GVLPMLRKVMIENQIAENLLASQAGERRLTDIM------HIGELL 700 Query: 534 ---NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 + L +E L + IS + + + ++ N V+I T+H +KGLE P+V L Sbjct: 701 QETSLQLDSEHALIRWLAQQISRPDAQAESQQMRLESDKNLVQICTIHKSKGLEYPIVCL 760 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + + ++ P S + + E RL Sbjct: 761 PFACNY---QEQKGALYHDRDEFYAKLDIFNQPDSV----------RLADEERLAEDLRL 807 Query: 651 LYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 LYV +TRA + + S ++ ++ + + + + Sbjct: 808 LYVALTRAKFCCYVGVAPLVKGNKRKSGLTDLHKNALGYLLQHGEEGNSELLHQSINQLL 867 Query: 705 NKDEWIAYE-----WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + + + P T + + I + +S + + L Sbjct: 868 DDNIKVITLGDTSTHRYQSPHTTDIALDAAIFKRKINDNWRITSYSGLTAQHSARGYLFD 927 Query: 760 ST-------------------IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800 S T ++ S+ + G +H LL+ + Sbjct: 928 SADLDALVQSIAPGLDTDAKGEKTAQHSDELSIHHFPRGAVAGTFLHSLLEELDFSQPID 987 Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK 854 + + K L+ + L P+ + E+ Sbjct: 988 ESWMQEQLIAQ---GFEEKWTPLLVAWMETLFHTPLNAQGLCLADIPKEHQLDELQFYLP 1044 Query: 855 IN--------------------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888 I + ++ G ID + + ++ +YK++ Sbjct: 1045 IEKEMSAAQLTELTRQYDPLSAQCPALNFQQVQGMLKGFIDLVFCWEGKYYVVDYKSNWL 1104 Query: 889 VPQEIEHIPY---------THIAQLSIYEKI----LKDSYPNKSLV------CLLI---- 925 ++ + Q +Y L+ P+ C L Sbjct: 1105 GESSEDYTQEAMSNAMRDHRYDLQYQLYTLALHRFLQQRLPDYDYQRHFGGICYLFLRGI 1164 Query: 926 ---YVSEPKVFIIPQNKLNKAFAEI 947 Y +P+ K +A + Sbjct: 1165 DTDYPGNGVYTYLPEEKFVEALDAL 1189 >gi|323978565|gb|EGB73647.1| exodeoxyribonuclease V [Escherichia coli TW10509] Length = 1180 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I + + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILKPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSTVEEPTLTPHQFPRGASLGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + + L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FEVQWEPVLTEWITAVLQAPLNETGVSLNQLPDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|293449143|ref|ZP_06663564.1| exodeoxyribonuclease V [Escherichia coli B088] gi|331678798|ref|ZP_08379472.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H591] gi|291322233|gb|EFE61662.1| exodeoxyribonuclease V [Escherichia coli B088] gi|331073628|gb|EGI44949.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H591] Length = 1183 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + ++ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFEAIEQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 520 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 637 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 790 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 909 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 910 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 970 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1026 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123 >gi|110680547|ref|YP_683554.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114] gi|109456663|gb|ABG32868.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114] Length = 810 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 106/654 (16%), Positives = 199/654 (30%), Gaps = 131/654 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L A Y+ + +DF DL+++ + + + + + + +IL+DE QDT++ Q Sbjct: 196 LYAQYQRRLIELNAVDFGDLLLHMVTIFQTHED---VLKQYQRWFAYILVDEYQDTNVAQ 252 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 253 YLWLRLLAA----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------- 295 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++ L ++RST IL V + E G + Sbjct: 296 -GAHVVRLEQNYRSTPHILAAASGVIAGNEGRLGKTLF---------------------- 332 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 ++ ++D + AR I I Sbjct: 333 ------TDVTEGEKVRLIGHWDGEEE-------ARWIGDEIEAAQRGTRGLEK-----FS 374 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D+ +LVR + + + I+D MA R ++S + Sbjct: 375 LDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRVVVSPD 430 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHVI 485 +DL+F ++ +P + I T R +++E G ++ + ++ Sbjct: 431 NDLAFERIVNTPKRGLGDKAQQTIQTTARANGVSLFEGARLAVAQGLIKGKGGAELRKLV 490 Query: 486 KYIHELIHIAQFC-------------------SPHDFFTLILGAKKGRQQFISRFGNE-- 524 + I I + S + +IL + + E Sbjct: 491 EGIDRWITMLHQRKQVDGDAVIDDGGGGALAFSHIELAEVILDESGYTTHWQNEKTPEAP 550 Query: 525 -VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583 ++ L E ++ E L LE + A +V +MT+H AKG Sbjct: 551 GRLENLKELVSQLQNFEN--------LQGFLEHVSLIMDNERDAGEEKVTLMTLHAAKGT 602 Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643 E P++FL + + Sbjct: 603 EFPLIFLPGWEDGLLPSQRS-----------------------MDEGGTEVRNGKRIAKG 639 Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 EE RL YVG+TRA I +N ++ ++ + E V+ + Sbjct: 640 LEEERRLAYVGITRAKKLCTISFVANRLIFSKGMKGWQSMMPSRFIDELPPEHVEVLTPP 699 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 A ST H + E + +++ + + E Sbjct: 700 GLYGGGYGAAAPRSTLHDQ----AAEANVYNSPGWRRLQARSQDRPVSQPRESR 749 >gi|82545121|ref|YP_409068.1| exonuclease V subunit beta [Shigella boydii Sb227] gi|81246532|gb|ABB67240.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella boydii Sb227] gi|332092103|gb|EGI97181.1| exodeoxyribonuclease V, beta subunit [Shigella boydii 3594-74] Length = 1180 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 131/971 (13%), Positives = 295/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S ++ S Sbjct: 215 DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPKSVDLAEVERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ ++ D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|323167843|gb|EFZ53534.1| exodeoxyribonuclease V, beta subunit [Shigella sonnei 53G] Length = 1170 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 296 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 354 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 355 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 406 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 407 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 456 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 457 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 506 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 507 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 566 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 567 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 623 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 624 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 675 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 676 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 729 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 730 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 776 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 777 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 836 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 837 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 896 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 897 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 956 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 957 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1013 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1014 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1073 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1074 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1110 >gi|255004091|ref|ZP_05278892.1| DNA helicase II (uvrD) [Anaplasma marginale str. Virginia] Length = 661 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 107/612 (17%), Positives = 188/612 (30%), Gaps = 123/612 (20%) Query: 69 LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125 L F Q +I +N P E+ KK + +++ T Sbjct: 122 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 181 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + + Y+E K DF DL++ + A + ++ ++++DE Sbjct: 182 CPNIVRDVYYEYQERLKALNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 238 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QD + +Q+ +R + + + + VGD+ QSIYS+ GAE +LR Sbjct: 239 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 288 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I+ L ++RST++IL + + ++ G Sbjct: 289 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 323 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + H Q + W + A+ I+ I Sbjct: 324 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 354 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + + +LVR T + I D IKDL++ Sbjct: 355 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVSYL 409 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478 R + + ++D++F ++ P + K+ R ++ E Sbjct: 410 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMIRFGLLPERTS 469 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536 + Q+++ S I I+ + E Sbjct: 470 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMNMLKDEGDAGASKIENIRELFAAV 529 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E + + + + N V +MT+H AKGLE P+VFL Sbjct: 530 GNFENA-----TKFLEHISLVTEVD--SPEQASNHVYLMTLHAAKGLEFPLVFLPGWEEG 582 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 VF H+ EE RL YVGMT Sbjct: 583 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 610 Query: 657 RASDQLIICKHS 668 RA +QL I + Sbjct: 611 RAREQLFISCVA 622 >gi|323172878|gb|EFZ58509.1| exodeoxyribonuclease V, beta subunit [Escherichia coli LT-68] Length = 854 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 123/853 (14%), Positives = 268/853 (31%), Gaps = 129/853 (15%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + K++ L F+D++ + L+ + + I +IDE QD Sbjct: 4 RALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQD 62 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T Q+ + R + H L +GD KQ+IY+F GA+ ++ + Sbjct: 63 TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 114 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 T L ++RS ++ V+K+FS ++A E ++ Sbjct: 115 YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA---- 160 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362 + + P + W +S S +A+ A I + + + Sbjct: 161 ------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 214 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + R ++A DI VLVR R++ + L+ SV ++R + + L ++++ Sbjct: 215 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEML 271 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L + +++ E + + L + + + DI + E+ ++ Sbjct: 272 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDVVVEEFDGYR 323 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539 + + + + S + +L G ++ + E L L + Sbjct: 324 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 377 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L + I E + + + ++ + V+I+T+H +KGLE P+V+L + Sbjct: 378 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 437 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + ++ N + + + E RLLYV +TR+ Sbjct: 438 DQAFYHDR-------------HSFEAVLDLNAAPESVDLAEVERLAEDLRLLYVALTRSV 484 Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 L + +KK + + E L I W T Sbjct: 485 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 544 Query: 718 ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761 + E + + + D+ ++ + Sbjct: 545 QTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 604 Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821 + + + + + + G +H L + + N++ + ++ Sbjct: 605 VVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWE 661 Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859 L IT +L+ P+ ++ D E+ I+ P Sbjct: 662 PVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLS 721 Query: 860 ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900 ++ G ID + + ++ +YK++ + + Sbjct: 722 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 781 Query: 901 IAQLSIYEKILKD 913 Q +Y L Sbjct: 782 DLQYQLYTLALHR 794 >gi|300815762|ref|ZP_07095986.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 107-1] gi|300906653|ref|ZP_07124342.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 84-1] gi|301302956|ref|ZP_07209083.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 124-1] gi|307310570|ref|ZP_07590218.1| exodeoxyribonuclease V, beta subunit [Escherichia coli W] gi|331669552|ref|ZP_08370398.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA271] gi|300401554|gb|EFJ85092.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 84-1] gi|300531691|gb|EFK52753.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 107-1] gi|300841620|gb|EFK69380.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 124-1] gi|306909465|gb|EFN39960.1| exodeoxyribonuclease V, beta subunit [Escherichia coli W] gi|315062126|gb|ADT76453.1| exonuclease V subunit beta [Escherichia coli W] gi|315256680|gb|EFU36648.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 85-1] gi|323377294|gb|ADX49562.1| exodeoxyribonuclease V, beta subunit [Escherichia coli KO11] gi|331063220|gb|EGI35133.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA271] Length = 1180 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + ++ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIEQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|114049045|ref|YP_739595.1| DNA-dependent helicase II [Shewanella sp. MR-7] gi|113890487|gb|ABI44538.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-7] Length = 722 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 99/551 (17%), Positives = 189/551 (34%), Gaps = 116/551 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y+E+ + ++DF ++++ ++L + + + HIL+DE QDT+ IQ Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + IR L + VGD+ QSIY + GA+ + + R R Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPT------ 273 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L ++RS +IL + + + G +LW Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERLGK---------------------ELW- 309 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + S F+ + + AR I I++ Sbjct: 310 ------TDEADGEPISLYCAFNEMDE-------ARFIVGRINDWYEKGG----------N 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + ++ ++ + IKD M R I ++ Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485 DD +F ++ +P + + + T R + T+++ + A S + + Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541 I L Q + + ++ A + + + G + + L+E + E Sbjct: 463 DLIVTLQEETQDMALYRMTDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522 Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + EL + L + A + V++MT+H+AKGLE +VF+ +F Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 K + +E RL YVGMTRA + Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608 Query: 661 QLIICKHSNTS 671 +L I + Sbjct: 609 KLYITYAESRR 619 >gi|319937196|ref|ZP_08011603.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1] gi|319807562|gb|EFW04155.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1] Length = 715 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 96/543 (17%), Positives = 170/543 (31%), Gaps = 112/543 (20%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 YE+ K+++ +LDF+DL++ T +L + I + + +I +DE QD S + + Sbjct: 173 YDDYEKYKEEHFMLDFDDLLLKTVELFENFPE---ILERWQRRFQYIHVDEFQDVSEVDY 229 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 ++I+ L+ L VGD Q+IYSF G++ ++ + Sbjct: 230 KLIKYLSGQAV-----------LCVVGDPDQTIYSFRGSDIHFIMNFDKDFP-------- 270 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 + L ++RST IL + + + +N Sbjct: 271 DTKTVILDQNYRSTKTILDISNNLIRKNKNRMEKELF----------------------- 307 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + + S D + A + TI +I + + Sbjct: 308 -----TELDDGPKVLHYSGVDEEAE-------ANFVCDTIEEIIHKEE--------GVNY 347 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 D +L R + +I + IKD ++ R +++ +D Sbjct: 348 HDFAILYRANYLSRSFEQKL----IQRQIDYRIFGGLKFFNRKEIKDALSYIRLMVN-QD 402 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVIK 486 DLSF ++ P + +I + YE + F++ + +K Sbjct: 403 DLSFERIVNVPSRGVGAKTLERIQNVAIEYGISNYEALTTFSDEIGLSGKAKKQLIEFVK 462 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546 I A S D F +LG + + + I L E + Sbjct: 463 CIEN--AKASSLSLPDVFEKLLGDVGYFEMLRNDQDDNRIQNLMELKASIANYMNTHPDT 520 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 S L+ + + V +M++H AKGLE VF+V VF Sbjct: 521 -PTFESYLQDIALYTSQDDVFDDEYVSLMSIHMAKGLEFNYVFVVGLSQDVFPSFRSVSE 579 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 EE RL YV TRA +L + Sbjct: 580 SGDDG--------------------------------MEEERRLAYVAFTRAKKRLYLTD 607 Query: 667 HSN 669 Sbjct: 608 SQG 610 >gi|213965014|ref|ZP_03393213.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46] gi|213952550|gb|EEB63933.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46] Length = 899 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 99/691 (14%), Positives = 196/691 (28%), Gaps = 170/691 (24%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 K++ L ++ ++E I + + + Y+ Sbjct: 199 KDMDLDAKKFTGRVLSSRISNLKNELID--PEKAIADASTTRNPFDDVVARVYLEYQTRL 256 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 + +DF+DLI + + + H+L+DE QDT+ Q+ ++ +L Sbjct: 257 RAANAVDFDDLIGEVVRIFTSHP---QVAEYYRRRFRHVLVDEYQDTNHAQYVLVSTLVG 313 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 P L VGD QSIY+F GA + + ++ + + I L Sbjct: 314 KP----GGDVPPSELCVVGDSDQSIYAFRGATIRNIEEFEKDYPE--------ATSILLE 361 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RST IL+ + + + EN + LW D Sbjct: 362 QNYRSTQTILSAANALIARNENRREKK---------------------LW------TDLG 394 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + + + + + AR IA I ++ D+ + R Sbjct: 395 EGGKIKGYVADNEHDE--------ARFIANEIEQLVDYG---------PYSYSDVAIFYR 437 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 + + + + + ++D++A R I + +DD+S ++ Sbjct: 438 TNNSSRALEDVF----IRMGVPYTVVGGTRFYERKEVRDIVAYLRVIENFDDDVSLRRII 493 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKF---------ANCGISKFQHVIKYIHELI 492 +P + + + + + + A + ++ I L Sbjct: 494 NTPRRGIGDRAVAHVSLYAEDERCSFGTALRAVAEGKVSAVAARSRNAMAAFVEMIDGLA 553 Query: 493 HIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------- 539 D I+ + + + +D L+E ++ Sbjct: 554 ADMASGELADIGDLVNAIIDRSGYKSELERSNDPQDATRLDNLNELVSVAREFSAEARMM 613 Query: 540 -------------------------------EQNSYSSLQ-ELISELEQYPPTIKRAHSA 567 E + L + ++ + + A Sbjct: 614 SSVDISADVKEGSGAAADAESGADTSGESEVESGIANDLARDFTADFDNDGEAEPGSLQA 673 Query: 568 -----------------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 + V +MT+HTAKGLE PVVFL+ +F H Sbjct: 674 FLERVSLVADADQIPDDDTGVVTLMTLHTAKGLEFPVVFLIGWEDGLFPH---------- 723 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 L E RL YVG+TRA QL + + Sbjct: 724 ------------------------LRALGDPKELAEERRLAYVGITRARKQLYLTRAVTR 759 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 S+ + + + + Sbjct: 760 SSWGSPQNNPPSRFLGEVPSDLIDWLREAPA 790 >gi|167645425|ref|YP_001683088.1| UvrD/REP helicase [Caulobacter sp. K31] gi|167347855|gb|ABZ70590.1| UvrD/REP helicase [Caulobacter sp. K31] Length = 804 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 101/604 (16%), Positives = 184/604 (30%), Gaps = 120/604 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+E + DF DL+++ + + + ++++DE QDT++ Sbjct: 212 ALYRQYQERLRILNACDFGDLLLHNITIFTGNPD---VLADFQRRFQYVMVDEYQDTNVA 268 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + + VGD+ QSIY + GAE +LR +R Sbjct: 269 QYLWLRLLAQ----------GRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------ 312 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I+L ++RST IL + ++ G + LW Sbjct: 313 --GAKVIKLERNYRSTEHILAAASGLIDANKSRLGKT---------------------LW 349 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ + +D + R +A I Sbjct: 350 -------TEETGGEKVKVSGVWDGEAES-------RMVADAIETAKKAGR---------- 385 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + + +LVR L+ I + I+D A R I S Sbjct: 386 KYSHMAILVRASFQMRAFEERFVMLQ----IPYKVVGGPRFFERAEIRDAHAYLRLIQSP 441 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484 +DDL+F ++ +P + + K+ R + + + + + + Sbjct: 442 DDDLAFERIVNTPKRGIGDTSVTKLLQIARSQGISTVDAARVIIGGDDLPARTRTALSNF 501 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQ 541 ++ + +A +L G ++ L E + + Sbjct: 502 LRDLDRWRALAANTPHQRVMEAVLEESGYTDALRLDKGPTSQTRLENLKELVQSMSAFDT 561 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + LE + A + V IMT+H+AKGLE P+VFL VF + Sbjct: 562 --------LEAYLEHVSLVMDLDKGAGDDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQ 613 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + + EE RL YVG+TRA ++ Sbjct: 614 RS--------------------------------MDDKGEKGLEEERRLAYVGITRAREE 641 Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 I +N + + V + P N Sbjct: 642 ARISFVANRQVYGRWTSQLPSRFVDELPLAHVDAASETGYYGGGPGMQQTVASRWDEPAN 701 Query: 722 TPLE 725 T Sbjct: 702 TFTA 705 >gi|191168612|ref|ZP_03030395.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B7A] gi|309793867|ref|ZP_07688292.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 145-7] gi|190901358|gb|EDV61124.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B7A] gi|308122274|gb|EFO59536.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 145-7] Length = 1180 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------EETIKQLMDEQKIPKKLFSPI 747 L I W T + + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDKQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ + D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|325204434|gb|ADY99887.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240355] Length = 671 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 110/609 (18%), Positives = 202/609 (33%), Gaps = 116/609 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 + A + I I I + Q D VL R + + R Sbjct: 314 ---ACQNEQHEAEWVVSQI---IKQKLIGGDKT----QYADFAVLYRGKHQARIFEEALR 363 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 +I + D IKD+++ R + + DD +F+ + +P + + Sbjct: 364 ----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVTLG 419 Query: 455 KIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 K+ ++YE Q N Q + A+ +F + Sbjct: 420 KLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFINSL 479 Query: 508 LGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 L ++ G + + +++ R ++ EL + + Sbjct: 480 LEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLEGK 539 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + V + T+H AKGLE P VFLV V H Sbjct: 540 D-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN---------------------- 576 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 +++ EE RL+YVG+TRA QL + + Sbjct: 577 -------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEPSR 623 Query: 684 MVYDSFHND 692 + + D Sbjct: 624 FIDEMPQED 632 >gi|293412165|ref|ZP_06654888.1| exodeoxyribonuclease V [Escherichia coli B354] gi|291468936|gb|EFF11427.1| exodeoxyribonuclease V [Escherichia coli B354] Length = 1183 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------YHQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 520 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 637 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 790 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 909 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 910 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ + D E+ Sbjct: 970 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSGRDKQVEMEF 1026 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123 >gi|296282686|ref|ZP_06860684.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354] Length = 769 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 120/787 (15%), Positives = 228/787 (28%), Gaps = 126/787 (16%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-----------QQASQTQCIEERF 66 + WP V+ NK E I + + + + + Sbjct: 63 RLAWPSEILCVTFTNKAAREMRERVGRHIGDAVEGMPWLGTFHAIGAKMLRRHAELVGLQ 122 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 S + + K +I + + +L D + ++ + Sbjct: 123 SNFTIIDPDDQLRLLKTLIAEADLDEKRWPARQLAGLIDRWKNRGLNPGDLDAVENEAYA 182 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L Y+ + DF DL+++ ++ ++ + + + +IL+DE Q Sbjct: 183 NGRGAQLYKTYQARLQSLNACDFGDLLLHMLNIFRQH---SDVLEQYQNRFKYILVDEYQ 239 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ +Q+ +R L + + + VGD+ QSIYS+ GAE +L+ ++ Sbjct: 240 DTNQVQYLWLRLLAQH----------RKNICVVGDDDQSIYSWRGAEVANILKFEKDFP- 288 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +I+L ++RST IL + G Sbjct: 289 -------GAKVIKLEQNYRSTPHILGAASGLIGENSQRLGK------------------- 322 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 +LW + W + ARR+ I ++ T Sbjct: 323 --ELW---TETDTGEKVRVIGVWDGPEE-----------ARRVGEEIESLERGGTGLD-- 364 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +I +LVR + T ++ F + I+D +A R Sbjct: 365 --------EIAILVRAQYQTREFEDRF----IQIGMAYRIVGGFRFYERAEIRDALAYLR 412 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH-- 483 I DDL+F + P + K+ R + A+ + Sbjct: 413 VIAQPADDLAFERIYNQPKRGLGAKTLEKMYQHARRTGMPLAAASLDLADSDELPARARG 472 Query: 484 ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 +++ + A +P + +L + + E L+ Sbjct: 473 TIGGLMRQFLQWREQADSLAPAELLRQVLEESGYQAMLENERTPEAKGRLENLSELARAM 532 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E + L LE + +A +V IMT+H AKGLE +FLV VF Sbjct: 533 E-----DYETLGDFLEHVALVMDNDANAEDAKVTIMTIHAAKGLEFDHLFLVGWEEGVFP 587 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + ++ EE RL YV +TRA Sbjct: 588 SQRSLDEGGL--------------------------------ASLEEERRLAYVAITRAK 615 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 I +N + + + +D + ++ + E Sbjct: 616 KACTILHAANRRIYGQWTSSLPSRFIEEL-PDDHVESETTMSGGASLWRANWSENDDPFA 674 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 T E + + Q+ + + E S + Sbjct: 675 HVTRDRPERSNNRGPGWQRALATGYETRPARVQESRRSAASFAAKPRDDIALGARVFHDK 734 Query: 780 FNRGLII 786 F G ++ Sbjct: 735 FGYGTVM 741 >gi|67459079|ref|YP_246703.1| DNA helicase II [Rickettsia felis URRWXCal2] gi|75536488|sp|Q4ULN5|UVRD_RICFE RecName: Full=Probable DNA helicase II homolog gi|67004612|gb|AAY61538.1| DNA helicase II [Rickettsia felis URRWXCal2] Length = 654 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 112/567 (19%), Positives = 189/567 (33%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + L +AK + Y++ + VLDF DL++ N+L K I ++ Sbjct: 160 LSASDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPE---ILRYYQEK 216 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 217 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 266 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N G + Sbjct: 267 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 310 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + W+ + AR IA I + Sbjct: 311 -------------LW---TDRESGEKIKIISCWSDKEE-----------ARYIAGEIDKL 343 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + D A +I +LVR T + + + + Sbjct: 344 VREDR---------YNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 390 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 391 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRVYALERNISNFAAIKEMLE 450 Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 G K + ++ I +P + IL + E I Sbjct: 451 MGEIKAKPYETLKDLVTKIDNWHERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 510 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 511 ENINEMLRAIAEF--------NDIHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 562 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF + L ++ Sbjct: 563 FDVVFLPGWEEGVFPSQRSLDEEGEKGLEEE----------------------------- 593 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 R+ YVG+TRA L I + Sbjct: 594 ---RRIAYVGITRAKKDLYITHAESRK 617 >gi|108803668|ref|YP_643605.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941] gi|108764911|gb|ABG03793.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941] Length = 694 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 106/631 (16%), Positives = 193/631 (30%), Gaps = 119/631 (18%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTND 158 + Q + ++R + + Y++ +N +DF+DLI+ T Sbjct: 123 RSFQAQISDAKNRLLGPDDYLRHTEGYVAENVAEVYGLYQQRLYENNAMDFDDLIMQTVA 182 Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218 L ++ +R + + +I +DE QDT+ Q+ ++ L R L Sbjct: 183 LF---ELFPEVRERYQERFRYIHVDEYQDTNHAQYRLVNILAA----------RHRNLCV 229 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD+ QS+YS+ GA+ + +L +R + +++L ++RST IL + V Sbjct: 230 VGDDDQSVYSWRGADIRNILDFERDYPE--------ARVVKLEQNYRSTQTILEAANAVV 281 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + + + LW + + + D + Sbjct: 282 ANNASRKAKR---------------------LW-------TAGEEGEPIRVFAAGDEYAE 313 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 AR + I ++ + ++ V R + + + Sbjct: 314 -------ARFVVSEIRRLLDGG----------ARPSEVAVFYRTNAQSRALEDVL----V 352 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457 I + IKD MA I + DD+S + P + ++ Sbjct: 353 REGIPYQVIGGLRFYERAEIKDAMAYLSVIANPADDVSLERIANVPKRGLGATSLGRLQE 412 Query: 458 TQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 R +YE + + + + + A P + ++ Sbjct: 413 HARRTGSALYESLAEPEAAGLSGRAARACGQLRELFEGWRVAAGEVGPAELVEAVISESG 472 Query: 513 GRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSAN 568 R + + E D L+E +N E SL+ + E Y A Sbjct: 473 YRDELEAERTVEAEQRLDNLEELINAARAYEMADPEPSLEGFLQEQALYSEQD--ALDTG 530 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 V +MT+H AKGLE P VF+V F H Sbjct: 531 GGSVTLMTLHNAKGLEFPHVFIVGMEEGTFPHARSLD----------------------- 567 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 + EE RL YVG+TRA L + S+ + R + + Sbjct: 568 ------------EQNLEEERRLCYVGITRAMRSLTLSYARVRSSWGEREPRMPSRFLSEI 615 Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + + E P Sbjct: 616 PERFKAGGPSGGGWGLLARGRRRREEVAPPP 646 >gi|161830545|ref|YP_001597082.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331] gi|161762412|gb|ABX78054.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331] Length = 1110 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 149/910 (16%), Positives = 304/910 (33%), Gaps = 138/910 (15%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112 + + +++ FLT++ +K + ++ ++ DL +L K+ ++ + Sbjct: 274 DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332 Query: 113 RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 T +++ L A ++ +DF ++ + L + Sbjct: 333 EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++D +I H+LIDE QDTS+IQ+ +I L + RTLF VGD QS Sbjct: 393 PSDYALQLDGQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F AE L+ K + + + L +FRS +++ ++ F + Sbjct: 448 IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLTLRNNFRSQKNLIDWFNQTFEPTFPKE 502 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 S + + H ++ N + ++ S ++ +A Sbjct: 503 ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A +I I + K I +LVR R IT R I Sbjct: 541 ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 + L + I+DL++L R + D ++++ +L++P + D+ + ++ Sbjct: 586 AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645 Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + G ++ + + + I A G + Sbjct: 646 WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 + L + +L+ L +L Q I N ++IMT+H A Sbjct: 706 TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637 KGLE V L + S H + + I P S+ + + + L + Sbjct: 758 KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693 K+ T E RLLYV TRA + L + N + K + ++ ++++ Sbjct: 818 IEKEKTTNEITRLLYVAATRAKESLHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 I +++ + + +++L + P L + + Sbjct: 878 EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESKP 921 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808 P++ G++IH+ L+ I + Sbjct: 922 LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964 Query: 809 CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861 + +L + E ++ ++++ L + +S SE ++ + Sbjct: 965 QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020 Query: 862 IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916 I ID I + +I +YK+ + ++ H AQL Y Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALDS 1080 Query: 917 NKSLVCLLIY 926 + + L + Sbjct: 1081 -RPIKLGLYF 1089 >gi|204928170|ref|ZP_03219370.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322492|gb|EDZ07689.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613394|gb|EFY10335.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322639429|gb|EFY36117.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322655186|gb|EFY51496.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322664085|gb|EFY60284.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322673102|gb|EFY69209.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677907|gb|EFY73970.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681082|gb|EFY77115.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685678|gb|EFY81672.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323244617|gb|EGA28623.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 1181 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 124/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D ST + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGSTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|325132192|gb|EGC54888.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M6190] gi|325138125|gb|EGC60698.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ES14902] Length = 671 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 111/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + + +++ R ++ EL + Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|308187972|ref|YP_003932103.1| exodeoxyribonuclease V beta chain [Pantoea vagans C9-1] gi|308058482|gb|ADO10654.1| exodeoxyribonuclease V beta chain [Pantoea vagans C9-1] Length = 1179 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 144/972 (14%), Positives = 300/972 (30%), Gaps = 141/972 (14%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEER 65 + N + K W V + + + + L A+ Q AS + Sbjct: 224 ARNLARIEAIKQQWQALSADVEGMISASGVDKRSYSSKHLPNWVAKVTQWASSETLDYQL 283 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 L F + T++ + L E + + E + +RD Sbjct: 284 PKELERF-----GQQVLDEKTKKGDAPRHSLFEAIDQFLAEPLSLRDVIIA--------- 329 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + K+ +L F+DL+ ++ L++ + I LIDE Sbjct: 330 --QALTDVRTTVQREKRLRALLGFDDLLSKLDEALQQPG-GVLLAETIRARFPVALIDEF 386 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT Q+ + R+L + + LF +GD KQ+IY+F GA+ LR + Sbjct: 387 QDTDPQQYRIFRTLY--------INQPEQALFLIGDPKQAIYAFRGADIFTYLRARSEVS 438 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 T L ++RS+ +++ V+++FS ++ S ++ + Sbjct: 439 AHYT----------LDTNWRSSPEMVESVNRLFSQLDSPFLFSAIPFLPVKPAAPNES-- 486 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---- 361 + D Q P W + + +A++ A IS + Sbjct: 487 --------LKLIFDEQQQPALRFWLQPGEGVGNSDYQQFMAQQCAADISRWLVAGQQGRA 538 Query: 362 -IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 + + ++A DI VLVR R + LI L SV + R + ++ Sbjct: 539 WLGKGEALQPVRASDITVLVRSRNEAGLIRDALNALSIP---SVYLSSRDSVYTTPEARE 595 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 L+ L + I + E + L + +F + + E + + E Sbjct: 596 LLWLLQAIQAPEQERLLRSALATSIFAIDAATLDALTQNEREWDALVEQFAV-------- 647 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---L 537 +Q + L + +L ++ G ++ L E L L Sbjct: 648 WQQLWHQRGVLPMLRDVMIKRQLAENMLASENGERRLTDLM------HLGELLQEASVQL 701 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597 + L + I+ + + ++ + V+I+T+H +KGL+ P+V+L Sbjct: 702 ESPHALVRFLAQQIARPNSQASSQQLRLESDRHLVQIITIHKSKGLQYPLVWLPFAAGFR 761 Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 + + + D + + ++ E RLLYV +TR Sbjct: 762 EAASALYHDRDNFTALLDVQGD-------------AQSLALAEEERLAEDLRLLYVALTR 808 Query: 658 ASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL----------- 700 + +I E ++ +V D + +L Sbjct: 809 SVYHCSVGIAPLIKGTRKKEGESDLHKSALGYLVQQGQAADAQQLSQRLNALTGEGIALV 868 Query: 701 -TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + ++ + W E + + R + ++ S D + ++ Sbjct: 869 EEDLLSGEMWRDAEQGDEALSSRDVTRALADVWRVTSYSGLQQHHSSPLLDALPNFDIDA 928 Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819 + + G+ + + G +H L + I R L Sbjct: 929 AGEEENGEEAALTPHHFPRGAAPGTFLHGLFESIDFTEPPDRIWLEDQLQHNGYPLSWLP 988 Query: 820 EYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSV------------------------- 851 + + + L ++ S + E+ Sbjct: 989 VIEQWIDRVLHTPLNAEGLTLSAIKSSERLIEMEFYLPINNLLTAADLDDLLRRHDTLSQ 1048 Query: 852 -SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THI 901 + ++ + ++ G ID + Q ++ +YK++ + P + Sbjct: 1049 QAAPLDFRQVRGMLKGFIDLVFRWQGKYYLLDYKSNWLGESHAAYTPEAMAQAMIGHRYD 1108 Query: 902 AQLSIYEKILKD 913 Q +Y L Sbjct: 1109 LQYQLYTLALHR 1120 >gi|304387165|ref|ZP_07369409.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091] gi|304338769|gb|EFM04879.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091] Length = 671 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 112/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + +++ R ++ EL + Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|167036387|ref|YP_001671618.1| DNA-dependent helicase II [Pseudomonas putida GB-1] gi|166862875|gb|ABZ01283.1| UvrD/REP helicase [Pseudomonas putida GB-1] Length = 728 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 118/721 (16%), Positives = 230/721 (31%), Gaps = 132/721 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + ++ + L + Sbjct: 33 GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109 F + L F Q+ +I + + + D ++ + FI + Sbjct: 93 FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFINGQ 152 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + L + + YE+A ++ V+DF +L++ DL + + Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ +Q+ +R L +L AVGD+ QSIY + Sbjct: 210 LEHYQRRFQHVLVDEFQDTNAVQYAWLRLLAR----------GGASLMAVGDDDQSIYGW 259 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + +I L ++RST IL + + + G Sbjct: 260 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 309 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + + + ++ + AR + Sbjct: 310 -------------------ELW-------TDMGEGEPLTLYAAYNEHDE-------ARYV 336 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 TI +++ +I +L R + ++ +I Sbjct: 337 VETIESLVKQGNAR----------NEIAILYRSNAQSRVLEEAL----LRERIPYRIYGG 382 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IK+ MA R I + +D + ++ P E + I RH +++E Sbjct: 383 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWE 442 Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519 + + K I+ I L H + Q+ Sbjct: 443 AMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLILYHQEEKG 502 Query: 520 RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G ++ L+E ++ E + + L L + L + + +++MT+ Sbjct: 503 EKGQARVENLEELVSAARNFESADEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTL 562 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VFLV +F HK + Sbjct: 563 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 593 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA QL++ V + + + Sbjct: 594 -----RLEEERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 648 Query: 698 I 698 + Sbjct: 649 L 649 >gi|255002962|ref|ZP_05277926.1| DNA helicase II [Anaplasma marginale str. Puerto Rico] gi|269958969|ref|YP_003328758.1| DNA helicase 2 [Anaplasma centrale str. Israel] gi|269848800|gb|ACZ49444.1| DNA helicase 2 [Anaplasma centrale str. Israel] Length = 661 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 108/612 (17%), Positives = 189/612 (30%), Gaps = 123/612 (20%) Query: 69 LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125 L F Q +I +N P E+ KK + +++ T Sbjct: 122 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 181 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + + Y+E K DF DL++ + A + ++ ++++DE Sbjct: 182 CPNIVRDVYYEYQERLKALNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 238 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QD + +Q+ +R + + + + VGD+ QSIYS+ GAE +LR Sbjct: 239 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 288 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I+ L ++RST++IL + + ++ G Sbjct: 289 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 323 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + H Q + W + A+ I+ I Sbjct: 324 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 354 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + + +LVR T + I D IKDL+A Sbjct: 355 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVAYL 409 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478 R + + ++D++F ++ P + K+ R ++ E Sbjct: 410 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMIRFGLLPERTS 469 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536 + Q+++ S I I+ + E Sbjct: 470 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMNMLKDEGDAGASKIENIRELFAAV 529 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E + + + + +N V +MT+H AKGLE P+VFL Sbjct: 530 GNFENA-----TKFLEHISLVTEVD--SPEQANNHVYLMTLHAAKGLEFPLVFLPGWEEG 582 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 VF H+ EE RL YVGMT Sbjct: 583 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 610 Query: 657 RASDQLIICKHS 668 RA +QL I + Sbjct: 611 RAREQLFISCVA 622 >gi|206559816|ref|YP_002230580.1| putative helicase [Burkholderia cenocepacia J2315] gi|198035857|emb|CAR51748.1| putative helicase [Burkholderia cenocepacia J2315] Length = 818 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 118/749 (15%), Positives = 223/749 (29%), Gaps = 161/749 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + + + K ++ K Q ++ Sbjct: 127 LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 180 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + +T L Y++ ++ V+DF +L++ +LL A +R Sbjct: 181 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 237 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F GA Sbjct: 238 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 287 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + R ++I+L ++RS +IL +++ S + G + + Sbjct: 288 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 339 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V+++ + S+ S A I Sbjct: 340 ---------AGHGEPVRVY--------------------------EASTDSQEAGWIVEE 364 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++I T + ++ VL R + I I Sbjct: 365 IRSLINTG----------MARSEVAVLYRSNAQSRSIEHTL----MSSGIPYRVYGGLRF 410 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + +K +A R I + DD +F ++ P I ++ R ++ I Sbjct: 411 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYGCSMAAAIP 470 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + I ++ Q + D I+ A + R G + ++ L Sbjct: 471 YVTGKAGTSLGGFANLIAKMRADTQHMNLPDTVEHIVRASGLADFYQGEREGQDRLENLQ 530 Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549 E +N L Sbjct: 531 ELVNAATAFIAEEGYGLDTPARSIPLRAGAIAAPELGTATDDPAVDVLDPASPADPAQNP 590 Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L L A + V++MTVH AKGLE VF+ +F H++ Sbjct: 591 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 650 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 L+ EE RL+YV +TRA ++L Sbjct: 651 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 676 Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + + + N R+ + K++ + A Sbjct: 677 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARP 736 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKND 750 RE+ + + + Sbjct: 737 GGGSREQIVDAAVSAPLPAFADKQRAADA 765 >gi|322620986|gb|EFY17844.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624049|gb|EFY20883.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628211|gb|EFY25000.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633330|gb|EFY30072.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636092|gb|EFY32800.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643708|gb|EFY40260.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648821|gb|EFY45268.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657983|gb|EFY54251.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322667053|gb|EFY63225.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|323194817|gb|EFZ80004.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196568|gb|EFZ81716.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205018|gb|EFZ90001.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207780|gb|EFZ92726.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212667|gb|EFZ97484.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214849|gb|EFZ99597.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222579|gb|EGA06944.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226458|gb|EGA10666.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230662|gb|EGA14780.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234987|gb|EGA19073.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239025|gb|EGA23075.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323247232|gb|EGA31198.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253285|gb|EGA37114.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256408|gb|EGA40144.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262416|gb|EGA45972.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267488|gb|EGA50972.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269108|gb|EGA52563.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1181 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 124/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D ST + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGSTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|121635136|ref|YP_975381.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18] gi|120866842|emb|CAM10600.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18] Length = 690 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 111/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 146 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 205 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 206 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 252 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 253 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 304 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 305 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 332 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 333 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 380 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 381 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 436 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 437 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 496 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + + +++ R ++ EL + Sbjct: 497 SLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWFARKGGEDGKNIIELAQTVALMTLLE 556 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 557 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 595 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 596 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 640 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 641 SRFIDEMPQED 651 >gi|193071405|ref|ZP_03052320.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E110019] gi|260856932|ref|YP_003230823.1| exonuclease V, beta subunit RecB [Escherichia coli O26:H11 str. 11368] gi|192955267|gb|EDV85755.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E110019] gi|257755581|dbj|BAI27083.1| exonuclease V, beta subunit RecB [Escherichia coli O26:H11 str. 11368] Length = 1180 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 ++ + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|317502698|ref|ZP_07960810.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606] gi|315666184|gb|EFV05739.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606] Length = 761 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 104/637 (16%), Positives = 190/637 (29%), Gaps = 122/637 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y++ + +DF+DL++ T L K+ D IR K + ++L+DE QDT+ + Sbjct: 175 QIYQTYQQRLQTANAMDFDDLLVLTWRLFKEHDD---IRIKYAERFKYVLVDEYQDTNYV 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q ++ LT++ + AVGD+ QSIY F GA +L ++I + Sbjct: 232 QQCIVLQLTQE----------HHHVCAVGDDAQSIYGFRGANIDNILDFQKIYPE----- 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + +L ++RST +I+ + + + I G + Sbjct: 277 ---TKLFKLEQNYRSTQNIVQAANSLILHNK----------RQIHKDVYSRNAKGEKLVL 323 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 V S + A + I + + Sbjct: 324 RPVYSDKE-------------------------EAAVVCRYIKQLQLKEH---------F 349 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + + R I IKD++A R +++ Sbjct: 350 NYSDFAILYRTNSQSRIFEEEMR----RQTIPYRIFGGMSFYQRKEIKDVLAYFRVVVNP 405 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYE-------YIQKFANCGISKFQH 483 ED+ + ++ P I KI H E+ + + K N ++K + Sbjct: 406 EDEEAIRRIINYPTRGIGASTIEKIIACAHLNHESFWSILNSPVKFGLKVNNGTLNKLRS 465 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN- 539 + + I + I+ + + S E + ++EF+N Sbjct: 466 FTELMSSFIEKVDTMDAYQLGVKIIQESEINKDIFSSTDPEAISRQENIEEFVNGLQDFV 525 Query: 540 ------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + YS L + + E+ +V +MT+H AKGLE P VF+V Sbjct: 526 ESRCEEGREEYSKLTDFLQEVSLLTDVE-SDDDKEGEKVSLMTIHAAKGLEFPTVFIVGM 584 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F YV Sbjct: 585 EENIFPSPMSSSSARELEEERRLL----------------------------------YV 610 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 +TRA + N K T + + + + Sbjct: 611 AITRAEQYCFLTCAKNRWRFGKLEFGTPSRFLNEIDPAFMEIFSDDFVSERPSRPVSPKP 670 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750 T R I ++ + + PI Sbjct: 671 TFTAASIRPAKLRPVKIPPVVSKNHADQPTSQPISTA 707 >gi|297182254|gb|ADI18424.1| superfamily I DNA and RNA helicases [uncultured delta proteobacterium HF4000_08N17] Length = 674 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 101/611 (16%), Positives = 189/611 (30%), Gaps = 116/611 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y++ K +DF+D++ T L +K + + + +I++DE QD Sbjct: 167 QMIGKIYRQYQKTMKGCNAIDFDDILNLTLSLFEKHPE---VMDNLTERFRYIMVDEYQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ IQ++++R LT+ R L VGD+ QSIY + GAE + + ++ + Sbjct: 224 TNRIQYKLLRHLTKQ----------HRNLCVVGDDDQSIYGWRGAEVRNIFDFEQDYPE- 272 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST IL ++V SI Sbjct: 273 -------VKYVRLEQNYRSTQIILQAANQVISINTQRMPKK------------------- 306 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + W + + + RRI I Sbjct: 307 --LW-------SEKQGGVKLDWLQSENEAEEVEVVT---RRIRTKILQ------------ 342 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +L R + + R K I D I+D +A + Sbjct: 343 -HGNRYLDFSILYRSNFQSRSLEEALREAK----IPYRVVGGTSFYDRQEIRDALAYLKV 397 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH---- 483 I + D++S ++ +P + + + T E + A ++ Sbjct: 398 IHNPNDEVSLHRIINTPRRGIGKTALVQANTCCQEMHLPLFKVMLRARKYEKIPKNAAFT 457 Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNF 535 I + F +L + ++ + + E L+ Sbjct: 458 MEMFAGIIINYQQRFANERFANVFKELLDEVGYIRFLETQSGEPKLRERRVKNVLELLSG 517 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + E + N+V IMT+H+AKGLE P VF++ Sbjct: 518 IRTYSDKNPEDSLRQYLERTTLFTENDNDADSKANQVSIMTLHSAKGLEFPFVFMIGMSE 577 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F ++ + +E RL YVG+ Sbjct: 578 GLFPNQRSLD-----------------------------------EGRVDEERRLCYVGI 602 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA +L + + ++ + + V I + K E S Sbjct: 603 TRAQQELTFSMAKSRKRFGEIIRQDPSRFLLNINPELLTVPIIGEASEEVKKERRQESRS 662 Query: 716 THHPENTPLER 726 + +E Sbjct: 663 AFFTQFKQIEA 673 >gi|16761770|ref|NP_457387.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143254|ref|NP_806596.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|168261856|ref|ZP_02683829.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|25289143|pir||AB0865 exonuclease V chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504072|emb|CAD02818.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29138887|gb|AAO70456.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|205349278|gb|EDZ35909.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 1181 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|74313388|ref|YP_311807.1| exonuclease V subunit beta [Shigella sonnei Ss046] gi|73856865|gb|AAZ89572.1| DNA helicase ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella sonnei Ss046] Length = 1180 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|107022515|ref|YP_620842.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054] gi|105892704|gb|ABF75869.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia AU 1054] Length = 846 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 117/748 (15%), Positives = 223/748 (29%), Gaps = 161/748 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + + + K ++ K Q ++ Sbjct: 155 LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 208 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + +T L Y++ ++ V+DF +L++ +LL A +R Sbjct: 209 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 265 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F GA Sbjct: 266 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 315 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + R ++I+L ++RS +IL +++ S + G + + Sbjct: 316 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 367 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V+++ + S+ S A I Sbjct: 368 ---------AGHGEPVRVY--------------------------EASTDSQEAGWIVEE 392 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++I T + ++ VL R + I I Sbjct: 393 IRSLINTG----------MARSEVAVLYRSNAQSRSIEHTL----MSSGIPYRVYGGLRF 438 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + +K +A R I + DD +F ++ P + ++ R ++ I Sbjct: 439 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSVEQLADAARLYGCSMAAAIP 498 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + I ++ Q + D I+ A + R G + ++ L Sbjct: 499 YVTGKAGTSLGGFANLIAKMRADTQHMNLPDTVEHIVRASGLADFYQGEREGQDRLENLQ 558 Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549 E +N L Sbjct: 559 ELVNAATAFIAEEGYGLDTPARSIPLRAGAIAAPELGTATDDPAVDVLDPASPADPAQNP 618 Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L L A + V++MTVH AKGLE VF+ +F H++ Sbjct: 619 DTMTPLAGFLSHAALEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 678 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 L+ EE RL+YV +TRA ++L Sbjct: 679 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 704 Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + + + N R+ + K++ + A Sbjct: 705 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARP 764 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749 RE+ + + + Sbjct: 765 GGGSREQIVDAAVSAPLPAFANKQRAAD 792 >gi|163741587|ref|ZP_02148978.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10] gi|161385321|gb|EDQ09699.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10] Length = 786 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 106/664 (15%), Positives = 192/664 (28%), Gaps = 121/664 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 A Y+ K +DF DL+++ + + + + + I++DE QDT++ Sbjct: 195 DFYAQYQARLKDLNAVDFGDLLLHMVTIFQDNPD---VLEQYQRWFRFIMVDEYQDTNVA 251 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + + VGD+ QSIY + GAE +LR ++ Sbjct: 252 QYLWLRLLAG----------AHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +++ L ++RST IL+ V G +LW Sbjct: 296 --GATVVRLEQNYRSTEHILSAASGVIRGNSGRLGK---------------------ELW 332 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++D + AR I I M I Sbjct: 333 -------TESRGGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGLAPI 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 ++ +LVR + + L I+D MA R ++S Sbjct: 374 DLNNMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484 +DDL+F ++ +P + I T E + + G + Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGKALHQL 489 Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + +A + + +IL + + + ++ L E + Sbjct: 490 VTDLARWGRLAGDADTTHMELAEIILDESGYTTMWQTDKNPDSPGRLENLKELVKALEAF 549 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + +V IMT+H AKGLE P VFL +F Sbjct: 550 EN--------LQGFLEHVSLIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 601 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 602 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 629 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + I + ++ + + LT Sbjct: 630 EICTIS----FAGNRRVFGQWQSQLPSRFIDELPEENVEVLTPPGLYGGGYGAAAPGGGG 685 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 + K++ S + S++ T+ + Sbjct: 686 AVRSTIEDRMAAADGYNSPGWKRMQSRAGERGLSQPRESKSSVIDLTATSAFMVGERVFH 745 Query: 780 FNRG 783 G Sbjct: 746 QKFG 749 >gi|304313385|ref|YP_003812983.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1] gi|301799118|emb|CBL47361.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1] Length = 738 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 115/689 (16%), Positives = 217/689 (31%), Gaps = 130/689 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + +S + + QTL Q Q Sbjct: 35 GAGSGKTRVLVHRIAWLVIARGLSPRGILAVTFTNKAAAEMRHRLQTLLQIPQGAMWVGT 94 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKI 110 F + L F Q+ ++ + + + + + + ++++Q Sbjct: 95 FHGIAHRLLRLHWQEAKLPEQFQVMDSDDQQRVLKRVMREMQLEEARWPVRQAQSYINSH 154 Query: 111 RDRFNTYKMFKSTLASL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 +D + + Y+ A + ++DF +L++ +++L + Sbjct: 155 KDEGKRPAHIQHFGDVYNRTMVEVYERYQAACEVGGLVDFAELLLRSHELWLHHPE---L 211 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 Q H+L+DE QDT+ +Q+ +R L + + VGD+ QSIY + Sbjct: 212 LRHYQQRFRHVLVDEFQDTNGVQYAWLRVLVGQ----------EQGITIVGDDDQSIYGW 261 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R + L ++RSTA+IL + V G Sbjct: 262 RGAKVENIQRFSEDF--------GGAETVRLEQNYRSTANILNAANAVIGCNRERLGK-- 311 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 QLW + S F+ L + AR + Sbjct: 312 -------------------QLW-------TEGKPGEPISVYPAFNDLDE-------ARFV 338 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + +DI +L R + L+ + Sbjct: 339 VERIQQHL----------HESFSYRDIAILYRSNAQSRLLEEAL----MKAGVPYRIYGG 384 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 D L I++ +A R I + DD +F +L P E + +I R ++++ Sbjct: 385 QRFFDRLEIRNALAYMRLINYRHDDAAFERVLNVPPRGIGERTVEQIREEARRLGQSMWI 444 Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + + + I + S D ++ A + G Sbjct: 445 ASLSLLEYRGLSARAGNALRAFLGLIEHMHQETLELSLADLIDHVVNASGLYEYHEKEKG 504 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + + L E +N E + L + + + V++MT+H Sbjct: 505 DRGEVRTENLRELINAAREFEVEDEIAQSPLQEFISRAALEAGDGSTDTEEAVQLMTLHA 564 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P+VF+V +F Sbjct: 565 AKGLEFPLVFMVGVEEGLFPSTQSN----------------------------------E 590 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHS 668 S EE RL YVG+TRA +L + Sbjct: 591 DPSRLEEERRLCYVGITRAMKKLYMTYAE 619 >gi|218555369|ref|YP_002388282.1| exonuclease V subunit beta [Escherichia coli IAI1] gi|218362137|emb|CAQ99746.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli IAI1] Length = 1180 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + ++ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIEQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFNQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|253690332|ref|YP_003019522.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756910|gb|ACT14986.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 720 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 116/728 (15%), Positives = 226/728 (31%), Gaps = 144/728 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIDHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D +++L+ + + Sbjct: 90 FHGLAHRLL------RAHHMDANLPQDFQILDSEDQLRLLKRLIRALNLDEKQWPPRQAM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WFINGKKDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + +IL+DE QDT+ IQ+ IR L D + VGD+ Sbjct: 204 PH---VLNHYRERFTNILVDEFQDTNRIQYAWIRMLAGD----------SAKVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + + I L ++RST++IL + + + Sbjct: 251 QSIYGWRGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + LW + S F+ L + Sbjct: 303 RLGKN---------------------LW-------TDGVEGEPISLYCAFNELDE----- 329 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 AR + I KD +L R + ++ + Sbjct: 330 --ARYVVNRIKTWQENGGAL----------KDNAILYRSNAQSRVLEEAL----LQQSMP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 + IKD ++ R I ++ DD +F ++ +P + + + R Sbjct: 374 YRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDR 433 Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + + Q I+ I L + H ++ Sbjct: 434 QLTLWQATRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHVQTDRVIKDSGLWSM 493 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G + ++ L+E + T + Q L L + L + AN + Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA ++L I + K V + Sbjct: 591 -----------RLEEERRLAYVGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEE 639 Query: 692 DERVKKIK 699 +++ Sbjct: 640 CVEEVRLR 647 >gi|34762638|ref|ZP_00143631.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887718|gb|EAA24794.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 693 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 105/546 (19%), Positives = 182/546 (33%), Gaps = 117/546 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y ++ +DF D+++NT LL+K + I K+ + +I+IDE QDT+ + Sbjct: 125 EVYDKYNRVLLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 180 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I + L VGDE QSIY F GA +L + Sbjct: 181 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFETNYNN----- 225 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++RST IL +++ ++++ LW Sbjct: 226 ---AKIIKLEENYRSTTTILDAANELIKNNKSSRDKK---------------------LW 261 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ + S RI I I Sbjct: 262 -------TQNGKGDLIKVLACDNARDEVS-------RIIEIIKENHQNG----------I 297 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +D+ +L R + + Y I IKD++A I++ Sbjct: 298 AYRDMTILYRTNAQSRVFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 353 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484 +D+L+ ++ P E + KI R + E + K + Sbjct: 354 QDELNLQRIINVPKRKVGEKGVEKIIAYARENNLNLLEALSHIKEISGLTAVGKEKLLEM 413 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542 I EL ++ + ++ K + I+ +DEF N L E Sbjct: 414 YDIIKELKDLSYTETASYIVQTLIDKIKYIDYIKENYDDAEARIENIDEFKNSILELE-- 471 Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L LE + + V++MT+H +KGLE P+VFLV +++F Sbjct: 472 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGS 531 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ EE RL YV +TRA + Sbjct: 532 ----------------------------------RAMFEEKEMEEERRLCYVALTRAEKK 557 Query: 662 LIICKH 667 L + Sbjct: 558 LYLSHA 563 >gi|302869750|ref|YP_003838387.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] gi|302572609|gb|ADL48811.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] Length = 1134 Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats. Identities = 128/1007 (12%), Positives = 246/1007 (24%), Gaps = 174/1007 (17%) Query: 58 QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFN 115 ++ S ++ L ++++ + + + + +R Sbjct: 178 DMSEVDRMPSTITDAVLALAGELDEHLVDPDELAAWTGRFFADVQSRPGRVYADVRKALQ 237 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + L + Y K +DF D + + + I Sbjct: 238 LQRTRLKLLPLVR-------AYARRKDDFEAMDFADQLARAARVARDHPGVGVI---ERD 287 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 +L+DE QDTS Q ++ +L + AVGD QSIY + GA Sbjct: 288 RFRVVLLDEYQDTSHAQVVLLNALFG----------GGHPVTAVGDPCQSIYGWRGASAG 337 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + R + G ++ L S+R+ +IL V + + ++ Sbjct: 338 TLDRFPAEFAR---TDGSPADVLSLTTSWRNRPEILGVANTL----------------SV 378 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 R++ Q A +A + ++ Sbjct: 379 PLRAAGARVPELHAALSVRDPIPHRTPGGQAGGTVHCALLETYADEADWIADSV---LAA 435 Query: 356 MIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 G + + VLVR R P I R + V L Sbjct: 436 WRGAAGMPGALPEHIPADRRPTTAVLVRLRSQIPAIEAALRA----RGLPVDVVGLGGLL 491 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ 461 D ++D++ R + D + + +L + D+ + + Sbjct: 492 DTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIARSRRELTGD 551 Query: 462 ----------ETETVYEYIQKFANCGISKFQHVIKYIH------ELIHIAQFCSPHDFFT 505 + T+ E + + L+ S + Sbjct: 552 EGPEITVDALDEATLVEALADLGPAQAYS-AEGYARLRSYGMELALLRYRLDQSLPELIA 610 Query: 506 LILGAKKGRQQFISRFGNE-------VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQY 557 I + R G + LD + R + ++L ++ L Sbjct: 611 DIERTIGLDVEVAVRAGRDGAGDAGLARAHLDALGDVAARFSGETPGATLAGFLAYLAAA 670 Query: 558 PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 V+++T H AKGLE VV + V+ H + L Sbjct: 671 EDEERGLAPGEVEVVAGAVQVLTAHAAKGLEWDVVAVAGMTRGVWPGPVRNSDHWLGGLG 730 Query: 614 DDPGIPIWIPQSKSRNNIVSD------------LIKHLKKSTQEEYNRLLYVGMTRASDQ 661 P + + + E RL YV +TR Sbjct: 731 VLPFPLRGDADGLPELALPEAEDQRGVARALTDFTDAWRAHDEREERRLAYVAVTRPRRL 790 Query: 662 LIICKHSNTSNEKKSNQRTWY--------------DMVYDSFHNDERVKKIKLTNSINKD 707 L+ + K+ + + +V T ++ + Sbjct: 791 LLCSGYWWGEGTKRFRGPSVFLREVHDACLAGGDGHVVDAWTPEPAGDAVNPTTETVLRA 850 Query: 708 EWIA----------------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 EW A PE E + + + Sbjct: 851 EWPADPLGTRRPALTEAAALVRRHLADPETARREAAVLATTGAADDAEVARWRREADLLL 910 Query: 752 NEPYILNPSTIDTKGKTN-----------------------LESLLSDNQTFNRGLIIHK 788 E L + + N RG H Sbjct: 911 AERAELARQAEAVEVELPGQLSVTQLVALRRDPEALARTLRRPMPTEPNPYARRGTAFHA 970 Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 L+ F +L A + L+ + + Sbjct: 971 WLEQRFGTD----------RLLDVDELPGAADEDAAPDEALAELQERFLAGEWAD--RVP 1018 Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 V V ++I GR+D + + + ++KT QL++Y Sbjct: 1019 VEVEVPFATVIAGVVIRGRMDAVFARPGGRYDVVDWKTGRQPAGREADAA---AVQLAVY 1075 Query: 908 EKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 + P + YV + + A + +P Sbjct: 1076 RLAWAELAGVPVDRVGAAFHYVRDSATVRPADLLDAEGLAALVAAVP 1122 >gi|13358064|ref|NP_078338.1| DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762416|ref|YP_001752584.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920094|ref|ZP_02931516.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508498|ref|ZP_02958027.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701747|ref|ZP_02971434.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11267430|pir||D82883 DNA helicase II UU501 [imported] - Ureaplasma urealyticum gi|6899500|gb|AAF30913.1|AE002148_5 DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827993|gb|ACA33255.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902450|gb|EDT48739.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675926|gb|EDT87831.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701018|gb|EDU19300.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 743 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 103/615 (16%), Positives = 183/615 (29%), Gaps = 116/615 (18%) Query: 62 IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121 + +L Q +K+ + ++I K +K K D + ++ Sbjct: 113 DTDDQEVLLKEIFDQLNIEKKSQVIKKIIKTISKVKNKFFDQNDMLNEKNHKYLELVDLN 172 Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 + + Y + K +DF+DLI T+ L + K + ++IL Sbjct: 173 DAQRLV----DIYKIYCDRCFKLNYVDFDDLINLTHKLF---IEFPEVLEKWQNKFDYIL 225 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 +DE QDT+ IQ+++I L + + LF VGD Q IYSF GAE + Sbjct: 226 VDEFQDTNKIQYDLISLLA----------TKHQNLFVVGDPDQMIYSFRGAEQWIINNFS 275 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 + + + L ++RST IL +++ N + Sbjct: 276 QNFKN--------TKVTILKTNYRSTQPILNTANRLIDANNNNYKKN------------- 314 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + P + D A IA I ++ T Sbjct: 315 -----------LTAFNTNDNNLPIYLRGQNPIDE----------ANWIARKIRELLEEGT 353 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 A I VL R + I I + IKD+ Sbjct: 354 P----------ANQIAVLFRSNHYSRTIEQSM----MRESIPYTILGSKKFYERAEIKDM 399 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG--- 477 +A + + + D+LSF+ ++ +P + + ++E + + Sbjct: 400 IAYLKVV-NDLDELSFLRIINTPRRAIGPTTFEHVKHYAINNNLFLFEALAEVEKNHLIN 458 Query: 478 ---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFL 533 + + I E+ + H+ LI + + + ID + E Sbjct: 459 NTQKKNILNFVNLIKEIRDEMEDLKIHEILELIYKKVNYEAYLLENEKAEDKIDNVYELK 518 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + L + + + V +MTVH +KGLE VF+ Sbjct: 519 RAMKMYVDRHPDD--TINDYLNSIALYLNKDGKDSKENVLLMTVHNSKGLEYENVFVAGM 576 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + + EE R+ YV Sbjct: 577 NEGLLPSDRAINDDPI--------------------------------KGVEEERRIAYV 604 Query: 654 GMTRASDQLIICKHS 668 +TRA L I Sbjct: 605 ALTRAKKNLYISSAC 619 >gi|222034534|emb|CAP77276.1| exodeoxyribonuclease V beta chain [Escherichia coli LF82] gi|312947371|gb|ADR28198.1| exonuclease V subunit beta [Escherichia coli O83:H1 str. NRG 857C] Length = 1180 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 129/971 (13%), Positives = 292/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S ++ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARSIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQI 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGK----------------------- 854 L IT +L+ P+ + D E+ Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISELLIASQLDALIRQFDPLSAG 1049 Query: 855 ---INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 + + ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|317050280|ref|YP_004111396.1| UvrD/REP helicase [Desulfurispirillum indicum S5] gi|316945364|gb|ADU64840.1| UvrD/REP helicase [Desulfurispirillum indicum S5] Length = 643 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 102/553 (18%), Positives = 182/553 (32%), Gaps = 115/553 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 T+ + Y++ +DF+DL++N ++L + + K Q+ +I +DE QD Sbjct: 172 TVIAPVFREYQKLMLSFNAMDFDDLLLNLKEILYHS---SDVLQKYQQKFRYIHVDEYQD 228 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ +Q+E++ L R LFAVGD+ QSIY F GA + +L ++ Sbjct: 229 TNQVQFEILHLLAGQ----------HRNLFAVGDDDQSIYRFRGATIENILNFEQHYPNT 278 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 A I +L ++RS IL + + S + G Sbjct: 279 A--------IFKLEQNYRSPQSILDCANSIISRNPRRH----------PKQLFSDLGPGE 320 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + S D A I I ++ Sbjct: 321 KIGLKVLPSADD-------------------------EASFIVGEIQQLLSDG------- 348 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 DI VL R + L L I F I+D++A Sbjct: 349 ---FAPSDIAVLYRTNAQSRLFE----ALLLRRGIPYRVVGSFEFWKRKEIQDVLAYVSL 401 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQ 482 I + D +F ++ PL + KI + R E + Sbjct: 402 IANPRDIQAFERVVNYPLRGIGAASVEKIVSLAVDSGRPVLEAAALMAADLRGKARQSIE 461 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLR 538 + ++++ + D I+ + +R ++ + E ++ Sbjct: 462 NFLEFLASFQGGQDYL-ISDMIEEIVRKAGIDKDIRNREDEHQAQSRLENIGELISAATA 520 Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ + L LE+ I+ + V ++T+H+AKGLE PVVFL + +F Sbjct: 521 FEKERPAEQITLSHFLEEINLGIETRQNT-QEGVSLLTIHSAKGLEFPVVFLSGLENTLF 579 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + QEE RL+YV +TR Sbjct: 580 PSPMSMG----------------------------------NQFAQEEERRLMYVAVTRC 605 Query: 659 SDQLIICKHSNTS 671 ++L + + + + Sbjct: 606 QEKLFLTRAQSRT 618 >gi|126664590|ref|ZP_01735574.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17] gi|126630916|gb|EBA01530.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17] Length = 721 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 106/580 (18%), Positives = 209/580 (36%), Gaps = 119/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + YE+ +++ ++DF +L++ +++L L + + + Q HIL+DE QDT+ Sbjct: 173 RVYRQYEKLCQQSGLVDFGELLLRSHELWLHRPE----LLAHYQQRFQHILVDEFQDTNA 228 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ ++ L S+ L VGD+ QSIY + GA+ + + + +R Sbjct: 229 IQYAWLQVLA----------SNRVPLTVVGDDDQSIYGWRGAKVENIQQYQRDFPN---- 274 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +++L ++RST IL + V + G +L Sbjct: 275 ----ARLVKLEQNYRSTKLILKAANSVIDNNQGRLGK---------------------EL 309 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S + F+ + A IA TI++ + + Sbjct: 310 W-------SDGVDGEPVSLYAAFNEQDE-------ANYIADTITSWVQDGNL-------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ I D I++ +A R + Sbjct: 348 --RAECAILYRSNAQSRVLEESL----MRQGIPYRVYGGLRFYDRQEIRNALAYLRLVHY 401 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------FQH 483 + DD +F ++ P + + ++ +++E Q+ + G K Q Sbjct: 402 RRDDAAFERVVNLPPRGIGAKSLADLRQYAGKQSISMWESAQRMLDAGQMKGRAKTGLQK 461 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + I EL +A+ + H + ++ S G + ++ L+E +N E Sbjct: 462 FLSIIEELSALAEHGTLHGLMQQTIDDSGLKEYHASEKGEKGQGRVENLEELVNALTTYE 521 Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + L E I++ + + V++MT+H+AKGLE P+VF+ +F Sbjct: 522 VEEGIDPLSEFIAQAALDAGEA--QAEDHEDSVQLMTLHSAKGLEFPLVFMAGVEEGLFP 579 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 H + EE RL YVG+TRA Sbjct: 580 HSMSLEEPG----------------------------------RMEEERRLAYVGITRAM 605 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +LII + + V + + + +++ Sbjct: 606 KKLIITYAESRRLYGQEKFNALSRFVREIPGDCIQEVRLR 645 >gi|15836655|ref|NP_297343.1| DNA-dependent helicase II [Xylella fastidiosa 9a5c] gi|9104818|gb|AAF82863.1|AE003859_4 DNA helicase II [Xylella fastidiosa 9a5c] Length = 728 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 103/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + +S + + + A Y+E + ++DF +L++ ++LL+ + Sbjct: 154 RRPEHIQPESHDDWIETQRRIYAEYQERCNRAGLVDFAELLLRAHELLRDTPA---LLTH 210 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 ILIDE QDT+ IQ+ +R L + + AVGD+ Q+IY + GA Sbjct: 211 YRSRFREILIDEFQDTNAIQYAFVRILANE----------TGHVIAVGDDDQAIYGWRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V + I L ++RS+A+IL + + + + G Sbjct: 261 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 308 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 LW + + ++ + + AR I Sbjct: 309 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + +I VL R + + + I Sbjct: 338 ACQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSE----HIPYRVYGGMRF 383 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IKD +A R + ++ DD +F ++ +P+ E + ++ R + +++ Sbjct: 384 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 443 Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 + + + +L + +L + R+ + Sbjct: 444 ACTQSTTLTARARNALASFLNLLQQLAVETSQMGLAERIDHMLLRSELREHWKKEARGSL 503 Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575 + LDE ++ R + EL + L A V++M Sbjct: 504 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYTCLESGDGQVQAGEEGVQLM 563 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P+VFLV + +F Sbjct: 564 TLHSAKGLEFPLVFLVGLENGLFPS----------------------------------A 589 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + EE RL YVG+TRA +LI+ K N + + + Sbjct: 590 RSLDEHGRLEEERRLAYVGITRARHKLILSYAEARRIHGKDNYNIPSRFLREIPRDLLHE 649 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724 + + S + + P+ Sbjct: 650 VRPTIQVSRQTPLGAVQRPAHDERDAAPI 678 >gi|283768593|ref|ZP_06341505.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa W1219] gi|283104985|gb|EFC06357.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa W1219] Length = 1039 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 130/859 (15%), Positives = 284/859 (33%), Gaps = 115/859 (13%) Query: 82 KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141 KN + +NK+ +++ L+ S + R + + + + L L + Y++ K Sbjct: 286 KNEEMRYLNKQFTEIRNALEDSL--IEESRLIKESSYLHEIAQSLLFLCQETEFQYQQLK 343 Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201 +K LDF D+ + + ++L+K + ++ K+ Q+ I++DE QDTS +Q +++ + Sbjct: 344 EKVMGLDFNDMALFSLEILEKNN--GYLAKKLQQKYAEIMVDEFQDTSELQHKILTMI-- 399 Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261 S+ + LF VGD KQSIY F A+P+ + + +K + L Sbjct: 400 ---------SNGKNLFRVGDLKQSIYGFRNAKPELMADLMK---------SKKDKVYHLE 441 Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321 ++RS I+ + +F N + + + + Sbjct: 442 HNYRSKDHIVQFTNALFQCLMNYE---------------KSSVPYASEDIVTIGKPEQQD 486 Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381 + + A+ I I ++ +DI +L Sbjct: 487 KESSCVNLIQIN-----SKDNMLGAKWIGQEILRLLEEG----------YTFQDICILTP 531 Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 D R ++ I +++ ++ +++ + +++D+ +L Sbjct: 532 SHADKA----QLRRAFDEIHIPYAIDEKQGFFKSSVVQTIISFVHYFCGKQEDIHLFAVL 587 Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501 +SP+F S++ K + + +F+ + + K + L Sbjct: 588 QSPIFQISDEQFAKSRLSYQQEKP----NTRFSTYFLDIHPTIKKRLEALKTCFLQEGTL 643 Query: 502 DFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560 F + L + ++ D + Q + + + LE+ Sbjct: 644 AFLQALSLENSFY-----AHLSSQQKTNFDFLFEKIV---QENIFTAYDFFHWLERSEDE 695 Query: 561 IKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617 ++ N V++ T+H +KGL+ VVFL + ++ + + Sbjct: 696 SSTESNSHLAEENLVKVETIHHSKGLQYKVVFLYKCDMK---SQNNGPVEVSGQYGIGLD 752 Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677 + S + + + + + EE+ RL YV +TRA ++L + SN + Sbjct: 753 YQEYTYYSYHSSLVKWMIQQDNHRKEGEEFLRLAYVAITRAEEKLYLVSPSNKKEGSLTR 812 Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737 + + + + + S +H ++ + Sbjct: 813 ---------------DFILSNQDLGVLVQAALKDLPASLYHCIEVEELENVQEYKMQPDY 857 Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 ++L K+ + +PS + K L N G +H L+ + P Sbjct: 858 PFVQELPHYSKDFSSIFKQDSPSHHGIELK-PLNFEKKKVTGQNFGSKVHTCLEKLPNRP 916 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKIN 856 + + SI + D + E+ Sbjct: 917 IQLDE-------------IDPQLPMATRESILFFQNSDWTQKIFQTMDIHRELP----YY 959 Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916 + I G +D I+ +Q+ I +YKT H + QL Y + YP Sbjct: 960 YEENGIAYQGILDFIATNQKKAIILDYKTDHL--DTEAAFIARYQDQLCQYRTTFEKIYP 1017 Query: 917 NKSLVCLLIYVSEPKVFII 935 + + + + + Sbjct: 1018 --EIETWIYSLHLKRFIFV 1034 >gi|145642218|ref|ZP_01797785.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021] gi|145273078|gb|EDK12957.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 22.4-21] Length = 670 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 115/643 (17%), Positives = 223/643 (34%), Gaps = 124/643 (19%) Query: 83 NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142 +T ++ K+ DL+E + + + + + + A Y + Sbjct: 118 KELTADVLKEDKDLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQIR 175 Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 LDF+DLI+ L K+ + +R K +I ++L+DE QDT+ Q+E+I+ L + Sbjct: 176 AYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVGE 232 Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262 VGD+ QSIYS+ GA P+ ++R + + ++I+L Sbjct: 233 ----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLEQ 274 Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322 ++RST IL + + E+ S Sbjct: 275 NYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------T 304 Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382 + E + + I+A IA+ R + KD +L R Sbjct: 305 IGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYRG 350 Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442 + L+ + +I + IKD+MA R +++Q+DD +F+ ++ Sbjct: 351 NHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIVN 406 Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHIA 495 +P + K+ + + ++++ I +F Q ++I EL Sbjct: 407 TPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDEI 466 Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYSS 546 Q P +L + + + ++ E N + Sbjct: 467 QRSEPERAVRSMLSTIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPMN 526 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L ++++ L + + ++V++MT+H +KGLE P V+L+ + H+ Sbjct: 527 LNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID- 585 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--I 664 + EE RL YVG+TRA +L + Sbjct: 586 ----------------------------------EDNVEEERRLAYVGITRAQKELTFSL 611 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 C+ E + + + + K KLT ++ Sbjct: 612 CRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 654 >gi|86137696|ref|ZP_01056272.1| DNA helicase II, putative [Roseobacter sp. MED193] gi|85825288|gb|EAQ45487.1| DNA helicase II, putative [Roseobacter sp. MED193] Length = 832 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 109/651 (16%), Positives = 200/651 (30%), Gaps = 121/651 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ + +DF DL+++ + + + I + + +I++DE QDT++ Sbjct: 234 ELYAQYQRRLLELNAVDFGDLLLHVVTIFQTH---SDILAQYQRWFRYIMVDEYQDTNIA 290 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 291 QYMWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 334 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL V S G +LW Sbjct: 335 --GAKVVRLEQNYRSTEHILAAASGVISGNSGRLGK---------------------ELW 371 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++ ++D + AR I I T +R I Sbjct: 372 -------TAEKGGEKVRLIGHWDGEEE-------ARWIGEEIEA-----TQRGTRGQRPI 412 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ +LVR + + L I+D M R + S Sbjct: 413 GLNDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMGYFRMVTSA 468 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHV 484 +DDL+F ++ +P + I R ++ E + G + + + Sbjct: 469 DDDLAFERVVNTPKRGLGDKAQQTIQGYARENGVSLVEGARLAVEAGAIKGKGGAALRRL 528 Query: 485 IKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + +A S + ++L + + + ++ L E + Sbjct: 529 VDDLARWGRMAGDADISHMELAEIVLDESGYTGMWQADKNPDSPGRLENLKELVKALENF 588 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + + +V IMT+H AKGLE P VFL +F Sbjct: 589 EN--------LQGFLEHVSLVMDNDKQDSDQKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 640 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TRA Sbjct: 641 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 668 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + I + ++ + + LT S P Sbjct: 669 EVCTIS----FAGNRRVFGQWQSQLPSRFVDELPEEHVEVLTPPGLYGGGYGAAASRAEP 724 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770 + +E + + + + + ID + + Sbjct: 725 IGSTIEAKVAQADGYNSPGWKRMQARAGQRGTPQTAQARGQIIDLEATASF 775 >gi|168242761|ref|ZP_02667693.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447882|ref|YP_002046963.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194406186|gb|ACF66405.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338102|gb|EDZ24866.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 1181 Score = 274 bits (700), Expect = 6e-71, Method: Composition-based stats. Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W ++ S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGENCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLMNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQAAMATAMQAHRYDLQYQLYTLALHR 1120 >gi|37521963|ref|NP_925340.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421] gi|35212962|dbj|BAC90335.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421] Length = 793 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 114/733 (15%), Positives = 223/733 (30%), Gaps = 134/733 (18%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E I + +P A +++ F Sbjct: 65 AAGEMKERILQLFCERTARSRGG-----EAFAALPDPERRAIAGRVRRELIQPLWVGTFH 119 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L + L + + + E QD+ I + + S+ Sbjct: 120 ALCARMLRYDIDKYTDQRGRTWQRNFTIFDE--SDVQDQIKDIVTKQLNLDDRRYVPRSV 177 Query: 128 TLA---------------------------KYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 A + Y++ +N LDF+DLI LL Sbjct: 178 RFAISGAKNQGLSPEEYQHSEGGSLRARTIAQVYERYQDQLARNNALDFDDLIWVPVQLL 237 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 ++ + + HIL+DE QDT+ Q+++IR L + R++F VG Sbjct: 238 RR---RPDVLDYWHRRFRHILVDEYQDTNRTQYDLIRLLATNNQPKSEWDWRDRSVFVVG 294 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D Q+IYSF A+ + ++ + + + ++I+L ++RS+A IL V +++ + Sbjct: 295 DADQAIYSFRQADFRILMDFQSDFGDGLADDETE-TLIKLEENYRSSATILDVANELIAN 353 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 +T V L E +++ Sbjct: 354 NIERIDKVLRATRPAGL---------PVSLHEAEDEVAEAE------------------- 385 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 I + + DT D VL R + I + + Sbjct: 386 -------YIVGQLRKLKDADTRP---------WNDFAVLYRVNAQSQPIEQAL----SRW 425 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 + D IKD+++ + I + D ++ + +P + + K+ Sbjct: 426 GVPYTVVGGLRFYDRREIKDVLSYLKAIHNPADSVALKRSMSAPRRGIGKTTLDKLEAGA 485 Query: 461 HETE-TVYE------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513 + ++++ I+ A ++++ L +A + +L Sbjct: 486 GMLQTSLWQLLTDETSIKNLAGRTSGPILQFVRFVERLQELAARVRVSELLDTVLKESGY 545 Query: 514 RQQFISRFGNEVI---DVLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTIKRAHS 566 Q E + + E + R E+ ++L+ ++ + Sbjct: 546 VQMLQEEGTEEAEGRLENVLELRSVVQRFEEESEDPENATLEAFLANVSLASDLDN--LE 603 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 A + +MT+H AKGLE PVVFL +F H Sbjct: 604 AGAERISLMTLHAAKGLEFPVVFLGGLEDGLFPHFR------------------------ 639 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 I+ + EE RL YVG+TRA ++L + + Sbjct: 640 --------AIQDGDSAAIEEERRLCYVGITRAKERLFLSYAQARRLYGDRQPAIPSQFLK 691 Query: 687 DSFHNDERVKKIK 699 + +++ Sbjct: 692 ELPAEKLAGTRVR 704 >gi|89055268|ref|YP_510719.1| ATP-dependent DNA helicase Rep [Jannaschia sp. CCS1] gi|88864817|gb|ABD55694.1| ATP-dependent DNA helicase, Rep family [Jannaschia sp. CCS1] Length = 817 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 112/690 (16%), Positives = 200/690 (28%), Gaps = 149/690 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L A Y+ K DF DL+++ + + D + + + +IL+DE QDT++ Q Sbjct: 199 LYAQYQARLKALNACDFGDLLLHVIQIFQDNDD---LLQQYQRWFRYILVDEYQDTNVAQ 255 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 256 YLWLRLLAA----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------- 298 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++ L ++RST IL V + G + LW Sbjct: 299 -GAHVVRLEQNYRSTGHILAAASGVIAGNTGRLGKT---------------------LW- 335 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + ++ ++D + AR I I M I Sbjct: 336 ------TDGEDGEKVRLIGHWDGDEE-------ARWIGEEIEAM-----GKGTRGMEPIG 377 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 I +LVR + + + I+D MA R ++S + Sbjct: 378 PNSIAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRVVVSPD 433 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVI 485 DDL+F ++ +P + I E + Q G + + ++ Sbjct: 434 DDLAFERIVNTPKRGLGDKAQQTIQRMARSNGVSLLEGARLCVETQAIGGKGGRELRTLV 493 Query: 486 KYIHELI-----------------------HIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + S + +IL + + Sbjct: 494 DGLARWRIQLTGALRAAGPSDDLIEEDADPSEVPKISHIELAEIILDESGYTSHWQNDKT 553 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E ++ L E + E L LE + +V +MT+H Sbjct: 554 PEGPGRLENLKELVKALENFEN--------LQGFLEHVSLIMDNEQDDQEPKVTLMTLHA 605 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE P VFL +F + + Sbjct: 606 AKGLEFPAVFLPGWEDGLFPSQRS--------------------------------MDES 633 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 ++ EE RL YVG+TRA + I N + W + F ++ ++ Sbjct: 634 GQAGLEEERRLAYVGITRAEEVCTISFAGN-----RRVYGQWQSQMPSRFIDELPEDHVE 688 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759 + +T P + ++ + ++ + P Sbjct: 689 VLTPPGLYGHQGSVSATASPVEREMAGSNLHEKAASADVYNSPGWRRLQARQGQYGTRQP 748 Query: 760 STIDTKGKTNLESLLSDNQTFNRG-LIIHK 788 S F G + H+ Sbjct: 749 SEAKAMTI-----DAEAISAFTVGDRVFHQ 773 >gi|325293426|ref|YP_004279290.1| DNA helicase II [Agrobacterium sp. H13-3] gi|325061279|gb|ADY64970.1| DNA helicase II [Agrobacterium sp. H13-3] Length = 824 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 179/551 (32%), Gaps = 114/551 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ K DF DL+++ + ++ I + Q+ +IL+DE QDT+ Sbjct: 220 RELYTAYQNRLKTLNACDFGDLLLHPISIFRRNPD---ILKEYHQKFRYILVDEYQDTNT 276 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + P+ + VGD+ QSIY + GAE +LR + Sbjct: 277 AQYMWLRLLAQRP------KGEPQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFP----- 325 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I+L ++RST IL + + E G + + + Sbjct: 326 ---GAKVIKLERNYRSTEHILGTAGHLIAHNEGRLGKTLFTERSSP-------------- 368 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + ++ + +DS + AR + I + + Sbjct: 369 ------------DDEKVVVHAAWDSEEE-------ARAVGEEIEQLQRKNH--------- 400 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + D+ +LVR L ++ + L I+D MA R + Sbjct: 401 -KLNDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVCQ 455 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + I + R + + Sbjct: 456 PADDLAFERIVNTPKRGLGDTTIRNLHDYARARDIPMLAAATDIIETDELKPKARKALFD 515 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 V++ + + IL + + E ++ L E + E Sbjct: 516 VVQDFRRWQGLLENTEHTTLAEQILDESGYTAMWQADKTAEAPGRLENLKELIRSMEAFE 575 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L LE + + N + V IMT+H+AKGLE VFL +F H Sbjct: 576 S--------LRGFLEHVALVMDAEQNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPH 627 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + +S EE RL YVG+TRA Sbjct: 628 QR--------------------------------ALDEGGRSGLEEERRLAYVGITRAKK 655 Query: 661 QLIICKHSNTS 671 I SN Sbjct: 656 LCHIWFVSNRR 666 >gi|120556547|ref|YP_960898.1| DNA-dependent helicase II [Marinobacter aquaeolei VT8] gi|120326396|gb|ABM20711.1| ATP-dependent DNA helicase UvrD [Marinobacter aquaeolei VT8] Length = 726 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 102/579 (17%), Positives = 201/579 (34%), Gaps = 119/579 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + YE+ ++ ++DF +L++ +++L L + + + Q HIL+DE QDT+ I Sbjct: 179 IYRQYEKLCQQGGLVDFGELLLRSHELWLHRPE----LLSHYQQRFQHILVDEFQDTNTI 234 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ ++ L S+ L VGD+ QSIY + GA+ + + + +R Sbjct: 235 QYAWLQVLA----------SNRVPLTVVGDDDQSIYGWRGAKIENIQQYQRDFPNS---- 280 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL + V + + G +LW Sbjct: 281 ----RLVRLEQNYRSTKTILKAANSVIANNQGRLGK---------------------ELW 315 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S + F+ + A IA +IS + + Sbjct: 316 -------TDGVEGEPISLYAAFNEQDE-------ANYIADSISAWVSEGNL--------- 352 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +L R + ++ I D I++ +A R + Sbjct: 353 -RSECAILYRSNAQSRVLEEAL----MRQGIPYRVYGGLRFYDRQEIRNALAYLRLVHYH 407 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQHV 484 DD +F ++ P + +I + +++E ++ G K Q Sbjct: 408 RDDAAFERVVNIPTRGIGAKSLQEIREYATGQGISLWESSERLLAAGQVKGRAKTGLQQF 467 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNFTLRNE- 540 ++ I+ L +A S + + G ++ L+E ++ + Sbjct: 468 MEIINTLSEMAGHASLQGLMKQAIESSGLKDYHASEKGEKGQARVENLEELVSALADYDV 527 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L E I++ A+ + V++MT+H+AKGLE P+VFL +F H Sbjct: 528 EEGVDPLAEFIAQAALDAGES--QADAHEDSVQLMTLHSAKGLEFPMVFLAGVEEGLFPH 585 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + EE RL YVG+TRA Sbjct: 586 SMSLEEPG----------------------------------RMEEERRLAYVGITRAMK 611 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L++ + + V + + + +++ Sbjct: 612 KLVLTYAESRRLYGQEKFHALSRFVREIPGDCLQEVRLR 650 >gi|260911842|ref|ZP_05918409.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634053|gb|EEX52176.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 1074 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 141/946 (14%), Positives = 292/946 (30%), Gaps = 104/946 (10%) Query: 3 NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62 G + I + L ++ + + Q Sbjct: 219 RALGKEAEQKLIGIGERFDELLEENQLSVDDF--------GYKDKGVCGYFIKLKNGQVE 270 Query: 63 EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 +++ L+ L P + +E N L D Sbjct: 271 DDKL--LTKRVLDALEDPNAWVGKKEQNGDGHALTVVRNVLFDYLNDSEKLRKEQAKHLK 328 Query: 123 TLAS-------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYK 172 + L L + E ++ L+ +T LL + +I K Sbjct: 329 SAKLTLRHLDQLRLLDKIETQVRELNDQSNRF----LLSDTQTLLHALIHDSDTPFIFEK 384 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 I ++ HI+IDE QDTS +QW + L ++ + S VGD KQSIY + Sbjct: 385 IGTQLEHIMIDEFQDTSTVQWANFKVLLQECMSHSQSQS-----LIVGDVKQSIYRWRSG 439 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + ++ + F I + ++RS +I+ + F + + Sbjct: 440 DWRLLNEIEKQF----AGSPHAFKIERMTTNYRSERNIVDFNNAFFEAACAIEQRELEVK 495 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + + + ++ QL + L +E + ++ T Sbjct: 496 SPMGAQQMQVAYQDVKQLVPTDKTPR----------GRVEVCLLNKEDCEQRMMAKVCDT 545 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I N++ +AKDI +LVR LI + + +V ++ F L Sbjct: 546 IKNLLEQG----------AKAKDIAILVRNNNSIALIADYMMVHLPE--VRLVSDEGFKL 593 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 +A++ +MA R + + D L + + + + I + + + + ++ Sbjct: 594 QASVAVQIIMAALRVLANPADRLLQANLATTYQTHILGNAIGDREMLKRDVDVAHFLPER 653 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532 F N + + Q F +E + F Sbjct: 654 FWNNH---------------QQLMAMPIFNIVEEV------YQAFQLERLSEQSAYICTF 692 Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 + + ++ + L +I ELE N VR++T+H +KGLE + Sbjct: 693 YDRLNKFLVDNSADLSAVIDELENDMKDRAIQSDE-LNGVRLLTIHKSKGLEFAHTIVPF 751 Query: 593 TGSQV-FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 Q+ + + N P IP+ + + ++ H + LL Sbjct: 752 CDWQLERTGGTLWCQPDEAPYNALPLIPVDLYPKQLMGSVFEKDYLHEHLQNMVDNMNLL 811 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 YV TRA L + + S + + + + + +++ Sbjct: 812 YVAFTRAGRNLFVMGEKDKSGSRSAVIGQCLEQL----------TGVLQGSTLETTAEED 861 Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771 E++ E + IP +K ++ L S ++ + Sbjct: 862 LEFNYGTLSIDTAEEKAKSTSDNVFNTIPSPFTFDVKVYESKAQFL-QSNKSSEFIGGED 920 Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831 N G ++H + I TL N + L+ + + Sbjct: 921 EDSQQNNYIKLGSVLHAVFAQIRTL--ADVPNVLRQLEQDGVIYDSDLTKDKLVEMLNKR 978 Query: 832 LENPMMTTAMSCDSY--SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889 + + S +E S+ P + +++ R D++ + + + + ++K Sbjct: 979 FADKRVKEWFSDGWQLFNECSILSI--DPVTNAVVTHRPDRVITNGEEMRVIDFKFGKP- 1035 Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935 H AQ++ Y +L+ K + L YV K+ + Sbjct: 1036 -------KEEHHAQVASYMALLEMM-GYKRVSGYLWYVYSNKIEEV 1073 >gi|167563007|ref|ZP_02355923.1| DNA helicase II [Burkholderia oklahomensis EO147] Length = 786 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 107/747 (14%), Positives = 220/747 (29%), Gaps = 159/747 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + + + K ++ K Q ++ Sbjct: 96 LRAHHRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + +T + L Y++ ++ V+DF +L++ +LL +R Sbjct: 150 QGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F GA Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + R ++I+L ++RS +IL + + + + G + + Sbjct: 257 NVGNMRDFENEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V+++ + ++ + A I Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I +++ T + ++ VL R + I I Sbjct: 334 IRSLVNTG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIPYRVYGGLRF 379 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + +K +A R I + DD +F ++ P I ++ R ++ I Sbjct: 380 FERQEVKHALAYLRLIDNPSDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + I ++ S + ++ A + + R G + ++ L Sbjct: 440 YVTGKAGTSLGAFANLIAKMRAETAQMSLPETVEHVVRASGLAEFYQGEREGQDRLENLQ 499 Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549 E +N L Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGDADPADAVLAPANLADPAQNP 559 Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L L A + V++MTVH AKGLE VF+ +F H++ Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL+YV +TRA ++L Sbjct: 620 ----------------------------------AVESDGLEEERRLMYVAITRAKERLY 645 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 + + ++ + + + K+ P Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKND 750 +++ +P + + Sbjct: 706 GGARDSVVDAAVSAPLPAFANQQREAE 732 >gi|300820608|ref|ZP_07100759.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 119-7] gi|300526872|gb|EFK47941.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 119-7] Length = 1180 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + ++ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIEQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVWDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|295097369|emb|CBK86459.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 1180 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 124/876 (14%), Positives = 271/876 (30%), Gaps = 133/876 (15%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 D + + L + K++ L F+D++ ++ L + Sbjct: 309 LFVAIDALLAEPLTLNDLMITRAMTEIRQAVAREKRRRGELGFDDMLSRLDEALS-SENG 367 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I +IDE QDT Q+ + R + L +GD KQ+I Sbjct: 368 EALASAIRTHFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPDTALLLIGDPKQAI 419 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ ++ + T L ++RS ++ V+ +FS E A Sbjct: 420 YAFRGADIFTYMKARSEVVAHYT----------LDTNWRSAPGMVESVNALFSRMETAFM 469 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 +E ++ V S P W + + +A Sbjct: 470 FNEIPFLPVKSAPKNASLRFEV----------SSAVQPAMTFWLLEGEGYGVADYQAAMA 519 Query: 347 RRIAYTISNMIGTDTIFSNGKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 + A I + + + ++A DI VLVR R++ LI L Sbjct: 520 QHCAAQIRDWLSAGARGEALLWKGEQANPVKASDITVLVRSRQEAALIRDALTLLDIP-- 577 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + D L ++++ L + +L+ E + + L S + + DI ++ Sbjct: 578 -SVYLSNRDSVFDTLEAQEMLWLLQAVLAPERENTLRSALASSMLGLNARDIDELNH--- 633 Query: 462 ETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 E ++ + + ++Q V+ + EL+ +L + G ++ Sbjct: 634 -DENAWDTVVEEFVHYRERWQKRGVMAMLRELMTRR------QIAENMLASSGGERRLTD 686 Query: 520 RFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576 + E L L +E L + I++ + + ++ + V+I+T Sbjct: 687 IL------HISELLQEAGTQLESEHALVRWLAQQIADPNSNASSQQMRLESDKHLVQIVT 740 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H +KGLE P+V+L + + + + + Sbjct: 741 IHKSKGLEYPLVWLPFIANYRVQDQAYYHDRETFD-------------AVLDLSKAETSV 787 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696 + + E RLLYV +TR+ + + + + + Sbjct: 788 ELAEAERLAEDLRLLYVALTRSVWHCSLGVAPVFRRRGEKTGESDFHLSALGRLIQRGEP 847 Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF------------ 744 K + + + + H P R E ++ + + Sbjct: 848 KDAAGLRLCIESLCGDDIALHIPSLPDNSRWEMAQEPATDLNARQITRVLADDWRVTSYS 907 Query: 745 ------SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798 I D+ ++ + + + + + G +H L + + + Sbjct: 908 GLQQHGQSIAQDLMPKLDVDAAGVGDVPVEPTLTPHQFPRGASPGTFLHSLFEEL-DFTQ 966 Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVS 852 + ++ + + A L I +L+ P+ + + + E+ Sbjct: 967 PVSEEWVLKML--QSGGYDAHWQPVLTDWINAILQAPLTTQGFSLRQLTARNKQVEMEFY 1024 Query: 853 GKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTH 886 + P K ++ G ID + + ++ +YK++ Sbjct: 1025 LPVAGPLKADALDALIRQYDPLSAGCPPLNFRQVQGMLKGFIDLVFRHEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGENSEAYTQQAMAAAMQMHRYDLQYQLYTLALHR 1120 >gi|94677005|ref|YP_588596.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220155|gb|ABF14314.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 646 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 91/482 (18%), Positives = 173/482 (35%), Gaps = 81/482 (16%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + A Y+EA +++ ++DF +LI+ T ++L+ A I + HIL+DE QDT+ Sbjct: 171 QRIYAVYQEACERSGLVDFAELILRTYEMLRN---KATIANYYRERFYHILVDEFQDTNH 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L + + VGD+ QSIY + GA+ + + + Sbjct: 228 IQYSWIRLLA----------NCKGYITIVGDDDQSIYGWRGAKVNNMQSFIQDFPQ---- 273 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST +IL + + + +N + L Sbjct: 274 ----VKTISLDQNYRSTKNILKAANYLIANNKNRLIKN---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S + + + A + I Sbjct: 309 W-------TNSDKGEYISLYCAMNEIDE-------AYFVVNKIILNHKNG---------- 344 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + KD ++L R + ++ + L+ I + +KD +A R I + Sbjct: 345 LALKDCVILYRNNAQSRVLEEVLLHLR----IPYHIYGGIQFFERKEVKDALAYLRIINN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQH 483 + DD ++ ++ +P I + ++ T+++ + K Q Sbjct: 401 RNDDAAYDRIINTPPRGIGTKTIEIVRKMAQNRQLTLWQASIVLLQEKVLKYSSNLALQE 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE 540 IK I + L++ + G I L+E +N T + Sbjct: 461 FIKLIENIAQNIANLPLEIQTNLVIKQSGLWNMYQQEQGEKGQSRIKNLEELVNATEKYN 520 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + + L + L + N + V++MT+H AKGLE VF+V +F Sbjct: 521 NHYNKDMVPLQAFLSNIALNTSDEFTNHNKDTVQLMTLHAAKGLEFQQVFIVGLEEGIFP 580 Query: 600 HK 601 + Sbjct: 581 SQ 582 >gi|161615928|ref|YP_001589893.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365292|gb|ABX69060.1| hypothetical protein SPAB_03725 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1181 Score = 274 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 122/876 (13%), Positives = 269/876 (30%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + + + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESVALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARALQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVS 852 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 853 GKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTH 886 I P ++ G ID + + ++ +YK++ Sbjct: 1025 LPIAQPITAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|320334525|ref|YP_004171236.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211] gi|319755814|gb|ADV67571.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211] Length = 768 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 111/612 (18%), Positives = 192/612 (31%), Gaps = 116/612 (18%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 A + YE K+ +DF DLI T L K+ + ++ I +DE QD Sbjct: 198 DAASEVYTRYEARKRAQNAIDFGDLITETVRLFKE---VPGVLERVQDRALFIHVDEYQD 254 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E+ R L S R L VGD QSIY F GA+ + +L ++ Sbjct: 255 TNKAQYELTRLLA----------SRDRNLLVVGDPDQSIYRFRGADIQNILDFQKDYP-- 302 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RS+A +L + +K+ Sbjct: 303 ------DAKVYRLEHNYRSSARVLNLANKLIENNTERLEKVLRPVK-------------- 342 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 + + + D + +A I + Sbjct: 343 --------------DSGEPVLFHRANDHRGEGD-------FVAEQI----------TLHH 371 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 R I+ D+ +L R + +I R I D I+D+++ R Sbjct: 372 HRGIKFSDMAILYRTNAQSRVIEESLR----RVNIPAKIVGGVGFYDRREIRDILSYARL 427 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----H 483 ++ DD++ ++ P + + K+ + + A + + Sbjct: 428 SINPADDVALRRIIGRPRRGIGDTALAKLIEWANINKVPILVACHNAEQILERGANKAVE 487 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 + + SP F ++ + NE I+ L+E +N Sbjct: 488 FANLMDAFSEAVEAYSPGAFLRYLIETSGYLDMLKAENNNEGQARIENLEELVNAAEEWA 547 Query: 541 QNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 Q+ ++ + + + A + V +MT+H AKGLE PVVF+V T Sbjct: 548 QDHEGTIADFLDDAALLSSVDDMRTKTENKDAPEDAVTLMTLHNAKGLEFPVVFIVGTEE 607 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 + K+ EE RL YVG+ Sbjct: 608 GLLPSKNALIEPGG----------------------------------VEEERRLFYVGI 633 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA D+L + N K+N + + E V + + W Y + Sbjct: 634 TRAMDRLYLTAAQNRMQYGKTNSTEDSRFLEELGQGFESVDQYGQVVEYTQKTWRDYRPT 693 Query: 716 THHPENTPLERE 727 NTP Sbjct: 694 ATRHMNTPTPTA 705 >gi|325205799|gb|ADZ01252.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M04-240196] Length = 671 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 112/611 (18%), Positives = 204/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R+K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRHKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + +++ R ++ EL + Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|197250871|ref|YP_002147902.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214574|gb|ACH51971.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 1181 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 121/876 (13%), Positives = 271/876 (30%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL------------------------ 831 + + L ++ + Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 832 --LENPMMTTAMSCDSYSEVSVSG---KINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886 + P++ + +S ++ + ++ G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLIAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|194434344|ref|ZP_03066608.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1012] gi|194417407|gb|EDX33512.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1012] gi|332088590|gb|EGI93703.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 155-74] Length = 1180 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------YHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFIFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDSLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|238909771|ref|ZP_04653608.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 1181 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + + + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESVALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|170782918|ref|YP_001711252.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169157488|emb|CAQ02679.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 815 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 119/768 (15%), Positives = 223/768 (29%), Gaps = 134/768 (17%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-LTQ 76 ++ WP ++ NK + E + + ++ + ++ + F TQ Sbjct: 78 REAWPSQILAITFTNKAAAEMRERVESLLGQASEGMWISTFHSACVRILRREAEAFGFTQ 137 Query: 77 KFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 FT + ++ + K+ + + K+++ + F T A Sbjct: 138 NFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGRISKLKNELSDADTFARTANFNDPA 197 Query: 131 KY----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + + Y + DF+DLI T L + + + H+L+DE Q Sbjct: 198 EAMFVEIFRQYTRSLAAANAFDFDDLIGQTVYLFR---AFPKVAALYQRRFRHVLVDEYQ 254 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS-----------PRTLFAVGDEKQSIYSFHGAEPK 235 DT+ Q+ +IR LT + +L VGD QSIY+F GA+ + Sbjct: 255 DTNHAQYSLIRELTRAVAPEDVPVDTRMSTNGMGGIDGASLTVVGDSDQSIYAFRGADIR 314 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + +R + ++ L ++RST +ILT + V S + + Sbjct: 315 NITEFERDFPQS--------KVVLLEQNYRSTQNILTAANAVISNNFDRKDKK------- 359 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 LW + S A+ +A I Sbjct: 360 --------------LWTSIGDGDKIVGF--------------TGYSGHDEAQFVADEIQK 391 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 + T +I V R T + + + + Sbjct: 392 LHEEGTA----------YSEIAVFYRTNAQTRALEEIL----IRSAVPYRIMGGTKFYER 437 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA 474 IKD MA + + D L+ +L +P + T E +++ + Sbjct: 438 AEIKDAMAYLVAVANPADVLALRRILNTPKRGIGPATETALANFAESHGVTFREAMRRAS 497 Query: 475 N-CGISKFQHVIKYIHELIHIA----------QFCSPHDFFTLILGAKKGRQQFISRFGN 523 K I + ++ S D T +L Q + Sbjct: 498 ELGLGPKVTQAILTLSRMLDEVALLLDPERPEGRTSVSDLVTTLLKRSGLVQALRASKDA 557 Query: 524 E---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 + + ++E + T +N+ L + ++E+ ++ V +MT+HT Sbjct: 558 QDEARAENVEELVAVTKEFSRNNPEGQLVDFLTEVSLVAAAD--ELDDSNGTVSLMTLHT 615 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE VFL + H+ P Sbjct: 616 AKGLEYDSVFLTGVEEDLLPHRMSANEPGGP----------------------------- 646 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 E RL YVG+TRA +L I + + N + + K+ Sbjct: 647 -----AEERRLFYVGITRARRRLFISLAMTRAQFGEVNVAMPSRYLQEIPAELIDWKQSP 701 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 + + + P+ Sbjct: 702 GMATSRGGTQPRALNARREGGGYGGRSRSSSGFEDPALPPPRPKTQWA 749 >gi|167762854|ref|ZP_02434981.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC 43183] gi|167699194|gb|EDS15773.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC 43183] Length = 781 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 92/610 (15%), Positives = 185/610 (30%), Gaps = 121/610 (19%) Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 + A + + + Y E ++ +DF+DL+ T L + + + + +IL+ Sbjct: 168 SAAKMPAIRDIYRRYWERCRQADAMDFDDLLFYTFLLFRD---RPEVLARYRSQFRYILV 224 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT+ Q ++ L ++ + + VGD+ QSIYSF GA+ +L + Sbjct: 225 DEYQDTNFAQHSIVLQLAKE----------HQHVCVVGDDAQSIYSFRGADIDNILYFTK 274 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + + +L ++RST I++ + + + S Sbjct: 275 VYP--------GTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIRKEVFS----------- 315 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + + +Y D + + I+ + + Sbjct: 316 ----------------EKDKGEPIGVYQAYSDVEEGDI--------VINKIAELRRQE-- 349 Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 D +L R + + R + IKD++ Sbjct: 350 -------NYVYSDFAILYRTNAQSRVFEEAMR----KRSMPYRIYGGLSFYQRKEIKDVI 398 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474 A R ++ D+ +F ++ P + + KI +++ + + Sbjct: 399 AYFRLTVNPNDEEAFKRIINYPARGIGDTTVNKITAAATSHNVSLWTVLCEPLTYGVNIN 458 Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531 K Q I I + ++ T I+ E + ++E Sbjct: 459 KGTAGKLQDFRCLIAGFIESVAEKNAYELGTEIIRQSGIIADVCQDNSPENLSRKENIEE 518 Query: 532 FLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585 N E N+ ++L + +SE+ + ++ +MTVH+AKGLE Sbjct: 519 LANGMSDFCAQRLEEGNANTTLSDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEF 577 Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 VF+V +F E Sbjct: 578 KNVFVVGMEENLFPSGMAGDSP----------------------------------RALE 603 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705 E RL YV +TRA D + + K + D ++ + Sbjct: 604 EERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGNPSRFLKDIDVRFLKLPQDAGLVRKV 663 Query: 706 KDEWIAYEWS 715 + ++ Sbjct: 664 DEYAASFRRE 673 >gi|94497982|ref|ZP_01304546.1| UvrD/REP helicase [Sphingomonas sp. SKA58] gi|94422565|gb|EAT07602.1| UvrD/REP helicase [Sphingomonas sp. SKA58] Length = 758 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 126/765 (16%), Positives = 228/765 (29%), Gaps = 138/765 (18%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77 + WP V+ NK I + + T L L Sbjct: 57 RRAWPSEILAVTFTNKAAREMRARVGAMIGDAVEGM-PWLGTFHAIAARMLRRHAELVGL 115 Query: 78 FTPQKNIITQEINKKSPDLK-----EKLKKSQDEFIKIRDRFN-------TYKMFKSTLA 125 + + T + + L ++ + + + D++ ++ Sbjct: 116 QSNFTILDTDDQLRLMKQLIQAEGIDEKRWPARQLGGLIDQWKNKGLTPDEVSAGEAEGY 175 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + L A Y+ + DF DL+++ +LK + + Q+ +I++DE Sbjct: 176 AHGKGQKLYAAYQARLRDVNACDFGDLLLHVLTILKMH---RDVLEQYQQKFRYIMVDEY 232 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ Q+ +R L ++ + + VGD+ QSIYS+ GAE +LR ++ Sbjct: 233 QDTNSSQYLWLRLLAQE----------RKNICCVGDDDQSIYSWRGAEVANILRFEKDFP 282 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 +II L ++RST IL V + N G + Sbjct: 283 --------GATIIRLEQNYRSTPHILGAASGVIAENGNRLGKT----------------- 317 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + + W + ARRI+ I + + Sbjct: 318 ----LWTDIDV---GEKVKVIGVWDGPEE-----------ARRISEDIEAIERSGGSLD- 358 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 D+ +LVR + T + F + I+D +A Sbjct: 359 ---------DVAILVRAQHQTREFEDRF----IQIGLPYRIIGGFRFYERAEIRDALAYL 405 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGI 478 R + DDL+F ++ P + + K+ R + + + Sbjct: 406 RLVNQPADDLAFERIVNVPKRGLGDKAVEKLHRLARAQGIPLTLAAARILDTDELTPQAR 465 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 I + A + IL + E ++ L E Sbjct: 466 RSLGAFIGDLARWRDRAGQLPHAELARQILDESGYTAMLQADRTTESAGRLENLTELTRA 525 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + L + LE + A +V IMT+H AKGLE VFL Sbjct: 526 MEEYDT--------LGAFLEHVSLVMDNEAQAEERKVTIMTIHAAKGLEFEHVFLAGWEE 577 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F + + S EE RL YV + Sbjct: 578 GLFPSQRALDEGGLNS--------------------------------LEEERRLAYVAI 605 Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715 TRA + I +N + W + F + + ++ +S++ + Sbjct: 606 TRARRRCTILHAAN-----RRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANW 660 Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 + + T + ++ FS I E S Sbjct: 661 SEREDPFANVARGTGRGPGWQRAQSSGQFSAEPVRIVEARSSAVS 705 >gi|187733096|ref|YP_001881439.1| exonuclease V subunit beta [Shigella boydii CDC 3083-94] gi|187430088|gb|ACD09362.1| exodeoxyribonuclease V, beta subunit [Shigella boydii CDC 3083-94] Length = 1180 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 131/971 (13%), Positives = 295/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S ++ S Sbjct: 215 DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPKSVDLAEVERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPM 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ ++ D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSVYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|161870316|ref|YP_001599486.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442] gi|161595869|gb|ABX73529.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442] Length = 690 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 112/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 146 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 205 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 206 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 252 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 253 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 304 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 305 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 332 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 333 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 380 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 381 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 436 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 437 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 496 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + + +++ R ++ EL + Sbjct: 497 SLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWFARKGGEDGKNIIELAQTVALMTLLE 556 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 557 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 595 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 596 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 640 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 641 SRFIDEMPQED 651 >gi|16766296|ref|NP_461911.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993491|ref|ZP_02574585.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16421543|gb|AAL21870.1| exonuclease V, beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328446|gb|EDZ15210.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248128|emb|CBG25963.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995133|gb|ACY90018.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159552|emb|CBW19071.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914013|dbj|BAJ37987.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323131350|gb|ADX18780.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 1181 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARALQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|261416924|ref|YP_003250607.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373380|gb|ACX76125.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326770|gb|ADL25971.1| ATP-dependent DNA helicase PcrA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 843 Score = 274 bits (699), Expect = 7e-71, Method: Composition-based stats. Identities = 93/550 (16%), Positives = 187/550 (34%), Gaps = 108/550 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 A Y++ ++ +DF+DL+ NT +L+ + + ++ + ++++DE QDT+ Sbjct: 200 ARYYAAYQKKLAESNAMDFDDLLFNTVRMLQ---MVPNLAEQLRERFQYVVVDEYQDTND 256 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q+E+++ L + + + VGD+ QSIY + GA K + R Sbjct: 257 VQYELLKLLI---------NRDTKNVTVVGDDDQSIYGWRGANIKIIRNFHRDF------ 301 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 +I++L ++RSTA+I+ V + V+ Sbjct: 302 --APVTIVKLERNYRSTANIVKGAGSVIAHN--------------------------VRP 333 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 E + + + + D + A IA T++ Sbjct: 334 AEMQKNVFSKEEAGELIHVRYFEDDRAE-------ASNIAKTVAQ------------AGP 374 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + R + ++ L+ I V D IKD++A R + + Sbjct: 375 DFYAKTAIFYRTNAQSRVLEKALNDLR----IPSVIFGGTRFWDRKEIKDVLAYLRVLAN 430 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYE---YIQKFANCGISKFQHVIK 486 ++DD +++ ++ +P + + + + E + ++ G K + Sbjct: 431 EKDDAAYLRVINTPPRAIGKTTVEGVLAKVKAGEGSFWDNLLAEANGTGRGAPKLKVFTD 490 Query: 487 YIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQ 541 + ++ + I+ + +E I LDE +N ++ Sbjct: 491 LVTNWKNMMTSGEYPLPILAEHIINDTGYKDFLRKEDEVTADERIANLDEMINAIREFDE 550 Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 ++L + ++ K+ + V +MT+H AKGLE V L ++F Sbjct: 551 EHPGATLDAFLQDISLLTDGDKK-VDTSKGLVTLMTIHMAKGLEFNTVHLAGCDDEIFPL 609 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 M M EE RL YVG TRA Sbjct: 610 VRGTSMLSM----------------------------AEINEQMEEERRLFYVGCTRAEK 641 Query: 661 QLIICKHSNT 670 +L + Sbjct: 642 KLYLYHAERR 651 >gi|331648580|ref|ZP_08349668.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M605] gi|331042327|gb|EGI14469.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M605] Length = 1183 Score = 274 bits (699), Expect = 8e-71, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 295/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 218 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 275 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 276 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 334 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 335 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 393 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 394 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 445 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 446 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 489 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 490 ----LRFVFKGEMQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 545 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 546 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 602 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 603 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 654 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 655 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 708 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 709 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 768 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 769 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 815 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 816 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 875 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 876 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 935 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 936 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 992 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 993 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1052 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1053 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1112 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1113 QYQLYTLALHR 1123 >gi|289422630|ref|ZP_06424472.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius 653-L] gi|289156981|gb|EFD05604.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius 653-L] Length = 1375 Score = 274 bits (699), Expect = 8e-71, Method: Composition-based stats. Identities = 120/708 (16%), Positives = 226/708 (31%), Gaps = 88/708 (12%) Query: 85 ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK---------MFKSTLASLTLAKYLNA 135 I +E + LK+ + I D K ++ A L + A Sbjct: 308 IKKEYKEDYKTLKDTFDAIKKSVKSILDDLRIDKKVIERENELVYPHMRALSDLVREFRA 367 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSL 190 +Y+ K + +++F D+ D+L D V++ I + I DE QD++L Sbjct: 368 YYKGKKLQKSIVEFSDVEHFALDILTSTDDDGRIVASDIARSYQERYQEIFTDEYQDSNL 427 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 +Q ++ ++ F VGD KQSIY F A P+ + + + + Sbjct: 428 VQETILDMVS---------RKDIPNRFMVGDVKQSIYMFRQAMPEIFMGKYKTYDIYEDD 478 Query: 251 AGQ----------------------------KFSIIELPLSFRSTADILTVVDKVFSIPE 282 + I L +FRS +IL + VF Sbjct: 479 VQTGSKDSVQTGSKDSSVQTGLKMESQPPSMRDRKILLYKNFRSRKEILEASNHVFKEIM 538 Query: 283 NAQGLSEDSTTTIRHRS-----------SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 ++ D T R S +G V + + + T Sbjct: 539 TSKTGDIDYTDEERLNPGATFKENNIENSHVGGPVEVHILDTKDIDSKDLGQSLLDIKTK 598 Query: 332 YFDSLPQESSASIL-ARRIAYTISNMIGT------------DTIFSNGKKRVIQAKDILV 378 D E + R A I+N+I R ++ KDI+V Sbjct: 599 GLDEQDIEDIKDMEKFRFEAMEIANIIDDIVNPSPEKSRYMVYDNETDDYRPVKYKDIVV 658 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 L R K+ I + I + + ++ L + I + D++ + Sbjct: 659 LFRSTKNRANI---LEDMLIKRDIPAYSESGGGYFSTIEVTTIINLLKVIDNPIQDIALI 715 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----KFQHVIKYIHELIHI 494 ++SP+FN+++ ++ +I E+ K + + + Sbjct: 716 ATMRSPIFNYTDQELARIRLADKESSYYQAIKTFIETSDDKDLVVKLTEFLDRLEKYRQD 775 Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553 A F + + G + L + E S+ L + Sbjct: 776 AFLLPIDQFMWKLYKDTGYYRYLEGLAMGEKRQANLILLHEKAKKYEAGSHKGLFNFLHY 835 Query: 554 LEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 +E+ T + + VRIMT+H +KGLE P+V + + + + Sbjct: 836 IERLKMTSSEPKEASLLSEDADLVRIMTIHKSKGLEFPIVIVANMDKNFNLRGDTSVVDL 895 Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 L P + ++ L K +++ + E R+LYV MTRA ++LI Sbjct: 896 DHKLGYGPKYIDINKKIFYNTTAMTILKKAKQRAVKSEEMRMLYVAMTRAKEKLIFTGCL 955 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 ++ + Y + + +K + + I + Sbjct: 956 KDIDKNLEAWKNTYRDLDGNIDPGSILKSMTYMDWIMPTIVNLEKRQD 1003 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 44/353 (12%), Positives = 108/353 (30%), Gaps = 39/353 (11%) Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680 WI + + ++ + LK E L V + + + H ++K Sbjct: 1022 WIIKFTDKYDVSKKYLDKLKDLEVIEMENLDSVEIKKTKYGKELIDHVELIDDKILIDHA 1081 Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740 ++ + + +E + +++ + P T + + Q+ Sbjct: 1082 DLIDDKKLMSCEKSQDDKRPLDKDMINEILNFDYRFKSSASKPSSISVTDIKKLMAQEEN 1141 Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800 ++ + I + +PS I + E + D + RG I H ++Q+I Sbjct: 1142 DQMHDKLYKTIPSNDLKSPSFIHDSKSSASEPIKHDYKANERGTIFHLVMQLIDFKAFED 1201 Query: 801 RKNFITSYCTKNAKLW--PAKEYKNLLLSIT----------------------RLLENPM 836 + + ++ I R + + + Sbjct: 1202 LVAYQQMSLDMIGLSNENDRPIREEIVRQIDSMVDKNILLRQEADTVNVSWIVRFIRSNI 1261 Query: 837 MTTAMSCDSYSEVSVSGKIN--------------CPKKDIIISGRIDQISI-SQQNIFIF 881 + D ++ IN + +++ G ID +I + Sbjct: 1262 YLDILEADKRGDLYKETAINYNIKMKDIYKDQGIMDDESMMMVGIIDLFYENKDGDIILL 1321 Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 +YKT + + + + + QL +Y++ ++D K + L S ++ Sbjct: 1322 DYKTDYVGDRSDQDLIDRYKVQLDLYKRAIEDISGKKVVKKYLYMFSAGRLLE 1374 >gi|320161958|ref|YP_004175183.1| ATP-dependent DNA helicase PcrA [Anaerolinea thermophila UNI-1] gi|319995812|dbj|BAJ64583.1| ATP-dependent DNA helicase PcrA [Anaerolinea thermophila UNI-1] Length = 737 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 106/714 (14%), Positives = 214/714 (29%), Gaps = 124/714 (17%) Query: 57 SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFN 115 ++ E+++ L + F+ Q+ +I + + + + ++ Sbjct: 92 ARILRREQQYLPLDANFVIFDEDDQQALIKRALRDLNLDEKLYRPTSVHAAISNAKNNLI 151 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + + + + + Y+E + +DF+DL++ LL + + +R + + Sbjct: 152 LPEDYPTATYRDEVVARVYKRYQELLVSSNAVDFDDLLLYAWKLLNE---FSTVREQYAR 208 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 HIL+DE QDT+L Q+E+++ L R LF VGDE QSIY + GA+ + Sbjct: 209 RFEHILVDEFQDTNLAQYELVKLLASY----------HRNLFVVGDEDQSIYRWRGADYR 258 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 VLR + R I L ++RST +L V + N ST Sbjct: 259 NVLRFEEDFPDR--------QKILLEQNYRSTQRVLDAAQAVINRNRNRTPKRLKSTP-- 308 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 ++ D + A + TI Sbjct: 309 ------------------------EHGEGEKLVLYEAVDDYGE-------AAFVVDTIQQ 337 Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415 ++ + D ++ R + L+ + Sbjct: 338 LVAGG---------KARPGDFAIMYRTNAQSRLLEEAF----LRAGVPYRLVGAMRFYGR 384 Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------ 469 +KD++A R + + D+ S ++ P + + + T Sbjct: 385 REVKDMIAYLRLVQNPADEASLGRVINVPPRGIGDKSQLALQMEAQRTGRSAGLILMELG 444 Query: 470 -------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--R 520 + S + E + S F IL R+ Sbjct: 445 REGKDSPHWQALGRNASLLADFGSLLGEWHRLKDEISLPSLFQRILNDLAYREYIDDNTE 504 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 G + + E L E+ L + L N ++T+H A Sbjct: 505 EGQSRWENVQELLRIAYEYEE---KGLTAFLENLALVSDQDT--LPENVEAPTLLTLHAA 559 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P+VF+ + H Sbjct: 560 KGLEFPIVFITGLDDGLIPHNRSLDDP--------------------------------- 586 Query: 641 KSTQEEYNRLLYVGMTRASDQLII--CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 E RL YVG+TRA ++ + +T + + + + + + + Sbjct: 587 -EAMAEERRLFYVGLTRAKKRVYLVRAAQRSTYGSFQDSIPSRFLKDIPADLIQQDGRGR 645 Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752 ++ S + +++ + + ER + + + + + + Sbjct: 646 RMGRSWQSESRRSWDDNYAGTWGSRPERAKPSHAPILQPRFKPGMRVKHPSWGE 699 >gi|197264911|ref|ZP_03164985.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243166|gb|EDY25786.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 1181 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + + + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESVALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|222474985|ref|YP_002563400.1| DNA helicase II (uvrD) [Anaplasma marginale str. Florida] gi|222419121|gb|ACM49144.1| DNA helicase II (uvrD) [Anaplasma marginale str. Florida] Length = 671 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 107/612 (17%), Positives = 188/612 (30%), Gaps = 123/612 (20%) Query: 69 LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125 L F Q +I +N P E+ KK + +++ T Sbjct: 132 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 191 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + + Y+E K DF DL++ + A + ++ ++++DE Sbjct: 192 CPNIVRDVYYEYQERLKALNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 248 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QD + +Q+ +R + + + + VGD+ QSIYS+ GAE +LR Sbjct: 249 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 298 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I+ L ++RST++IL + + ++ G Sbjct: 299 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 333 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + H Q + W + A+ I+ I Sbjct: 334 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 364 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + + +LVR T + I D IKDL++ Sbjct: 365 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVSYL 419 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478 R + + ++D++F ++ P + K+ R ++ E Sbjct: 420 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMIRFGLLPERTS 479 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536 + Q+++ S I I+ + E Sbjct: 480 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMNMLKDEGDAGASKIENIRELFAAV 539 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E + + + + N V +MT+H AKGLE P+VFL Sbjct: 540 GNFENA-----TKFLEHISLVTEVD--SPEQASNHVYLMTLHAAKGLEFPLVFLPGWEEG 592 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 VF H+ EE RL YVGMT Sbjct: 593 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 620 Query: 657 RASDQLIICKHS 668 RA +QL I + Sbjct: 621 RAREQLFISCVA 632 >gi|294669243|ref|ZP_06734323.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308875|gb|EFE50118.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 623 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 110/592 (18%), Positives = 203/592 (34%), Gaps = 120/592 (20%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE L K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 126 KEALFKAQHQISLWKNDLKTPEDVLQTASNAWEEQIARVYASYQETLQSYQAVDFDDLIR 185 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q++ Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 A + I ++G D Q D VL R + Sbjct: 318 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R ++ + D IKD+++ R + + DD +F+ + +P + Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 417 LGKLNTYAHEHECSLYEAAQNEEALALLNNTNRQHLQAFMDMFGNYRAKAETSEAGEFIN 476 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + + R + ++ EL + Sbjct: 477 SLLKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQDGKNIIELAQTVALMTLLE 536 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V++ T+H +KGLE P +FLV + H Sbjct: 537 GK-SEEEVDAVKLSTLHASKGLEYPYIFLVGCEEGILPHN-------------------- 575 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 +++ EE RL+YVG+TRA QL + N+ Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCVKRKNK 612 >gi|194290339|ref|YP_002006246.1| DNA-dependent atpase i and helicase ii [Cupriavidus taiwanensis LMG 19424] gi|193224174|emb|CAQ70183.1| DNA-dependent ATPase I and helicase II [Cupriavidus taiwanensis LMG 19424] Length = 782 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 108/671 (16%), Positives = 203/671 (30%), Gaps = 144/671 (21%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K Q +++ ++ L A Y+ ++ V+DF +L++ +LL Sbjct: 138 KNLQYFINNAKEQGLRPADVEANDDFNKRFVDLYAAYDMQCQREGVVDFAELLLRCYELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + D IR H+L+DE QDT+++Q++ ++ L +P +FAVG Sbjct: 198 RYNDA---IRQHYQHRFRHVLVDEFQDTNVLQYQWLKLLAGHGT------QNPAAVFAVG 248 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + + + R +I+L ++RS IL + + S Sbjct: 249 DDDQSIYAFRGANVGNMRDFEHEFRVR--------RMIKLEQNYRSHGHILDSANHLISH 300 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + + G V+++ Q Sbjct: 301 NARRLGKNLRTD---------AGHGEPVRVF--------------------------QGG 325 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 S A I I + I +I +L R + +I Sbjct: 326 SDGQEAAWIIEEIRDQIAQG----------ASRAEIAILYRSNAQSRVIEHAL----FSA 371 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459 I + IK +A + + + +D +F ++ P + + Sbjct: 372 GIPYRVYGGLRFFERAEIKHALAYMQLLENPRNDAAFGRVVNFPARGIGARSLEVLQDMA 431 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 R + E + SK + I ++ + + + ++ + Sbjct: 432 RQYDCALAEAVAYVPGAAGSKLAAFTRLIDQMRADTRRMTLAETVEYVINHSGLITHYQG 491 Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-------------------------- 552 G + I+ L E + L+ L + Sbjct: 492 EKEGQDRIENLQELVTAAQAFVVEEGYGLEALAAVIPAERGPATPVLADGDQSQQLLDPE 551 Query: 553 -----------ELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L A + V++MTVH AKGLE VVF+ +F H Sbjct: 552 ALPVVMTPLVAFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFDVVFISGLEEGLFPH 611 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 ++ + EE RL+YV +TRA Sbjct: 612 ENS----------------------------------MMDPDGLEEERRLMYVAITRARK 637 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +L + + + + +T Y + F LT + + + Sbjct: 638 RLYMS----FAQSRMLHGQTRYHVRSRFFEELPEASLKWLTPPAQSYGGVRRQERDNAWG 693 Query: 721 NTPLEREETIK 731 + E + Sbjct: 694 RDWFRKPEDVP 704 >gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85] gi|289712598|gb|EFD76610.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85] Length = 650 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 107/681 (15%), Positives = 188/681 (27%), Gaps = 136/681 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + L ++ Sbjct: 79 AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + + + Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L N P L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL+ + V + + Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + I+D++A R Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + A Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ EL + +L R++ + + +D L+E ++ Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542 Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581 + L LE+ H V +MT+HTAK Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE PVVF+ +F H Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629 Query: 642 STQEEYNRLLYVGMTRASDQL 662 E RL YVG+TRA + Sbjct: 630 -ELSEERRLAYVGITRARQRC 649 >gi|238751473|ref|ZP_04612965.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia rohdei ATCC 43380] gi|238710340|gb|EEQ02566.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia rohdei ATCC 43380] Length = 1194 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 120/984 (12%), Positives = 288/984 (29%), Gaps = 142/984 (14%) Query: 8 SLNESYELIYKDLWPLPYFQVSDIN-KYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 +E+ ++ + + L + K++ + + + Sbjct: 199 DEDETLLSRHQQIVVQIDAVKAQWRVAAHELEPLISGSGVDKRSYSTKHLPNWLDKVGIW 258 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 + + +K + K Q D + L Sbjct: 259 AEQETGDYQLPKELEKFRQSVLFEKTKKGAAP-----QHALFNAIDHLFEQPLTLRDLIL 313 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + ++ K++ L F+DL+ + L++ + I +IDE Q Sbjct: 314 ARAISEIRETVQQEKRQRAELGFDDLLSKLDAALQQPG-GELLAQTIRTRYPVAMIDEFQ 372 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT Q+ + +L L +GD KQ+IY+F GA+ +R + Sbjct: 373 DTDPQQYRIFHTLYGG--------QGDCGLLLIGDPKQAIYAFRGADIFTYIRARSEVSA 424 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 T L ++RS+ ++ V+++FS+ + + I ++ Sbjct: 425 HYT----------LETNWRSSFPMVQSVNRLFSLVKVPFLF--EQIPFINVTPAKRNSRL 472 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----T 361 + ++ + P W + + ++AR+ A I + + Sbjct: 473 SFEI--------KGKKQPAMSFWLQPGEGVGVSEYQQLMARQCAAQIRDWLTAGQQGLAQ 524 Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 + + R +QA DI +LVR R + L+ L SV ++R + D KDL Sbjct: 525 LVTASSSRAVQASDITILVRSRAEAALVRNALSVL---AIPSVYLSNRDSVFDTAEAKDL 581 Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481 + + + +++ E + + + + + + + + + + + Sbjct: 582 LWVLQAVVAPEQERALRSAMATGMLGLDAKMLDGLNHDERAWDALVDEFDGYRQHWQR-- 639 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541 + V+ + E++ +L G ++ L E L Sbjct: 640 RGVLPMLREMMSRRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLD 687 Query: 542 NSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 + ++ ++ L ++ Q + ++ + V+++T+H +KGLE P+V+L G+ Sbjct: 688 SEHALIRWLAQQIAQPNPQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQ 747 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + N + ++ E RLLYV +TRA Sbjct: 748 QQDVLYHDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRA 794 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDM-----------VYDSFHNDERVKKIKLTNSINKD 707 + +K + + V ++ + E++ ++ + Sbjct: 795 VYHCSLGIAPLIKGGRKKQGDSDMHLSALGYLVQQGQVGNAQYLGEKLAELAALAGGDIS 854 Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI-------------------- 747 A + + + Q + Sbjct: 855 VSHAGQLDETPWQPKTADLPALAACQFSRQVHDYWRVTSYSGLQQQGSSKGSISPPLNVL 914 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807 ++ + + + + + G +H LL+ + ++ Sbjct: 915 LQELLPRLDTDAAGEQAPITEAQFTPHTFPRGAAPGTFLHDLLEPLDFSQPIEQAWLTEQ 974 Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSYSEVSVSGKINCPKKDI-- 862 + + L I ++ N + +E+ I+ + Sbjct: 975 LQLQGFGEQWSDMLYQWLNDIVQVPLNETGVTLAGLTPQSKQAELQFYLPIDSLLQAREL 1034 Query: 863 ------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQEIE---- 894 ++ G ID + Q ++ +YK++ Sbjct: 1035 DTLIKHYDPLSRQCPALDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTAE 1094 Query: 895 -----HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1095 AMAQAMAEHRYDLQYQLYTLALHR 1118 >gi|158426099|ref|YP_001527391.1| DNA helicase II [Azorhizobium caulinodans ORS 571] gi|158332988|dbj|BAF90473.1| DNA helicase II [Azorhizobium caulinodans ORS 571] Length = 835 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 104/534 (19%), Positives = 175/534 (32%), Gaps = 114/534 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L A Y+ K +DF DL++ L ++ + + ++ +IL+DE QDT++ Q Sbjct: 238 LYAAYQARLKALNAVDFGDLLLEGIRLFRENPD---VLAEYHRKFKYILVDEYQDTNVAQ 294 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R L + R + VGD+ QSIY + GAE +LR + Sbjct: 295 YLWLRLLAQ----------GSRNVCCVGDDDQSIYGWRGAEVDNILRFESDFP------- 337 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 +I L ++RST IL + + E G + S Sbjct: 338 -GAKVIRLERNYRSTGHILAAASHLIAFNEGRLGKTLFS--------------------- 375 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 ++ + T +DS + AR I I + Sbjct: 376 -------EGEKGEKVTVTGAWDSGEE-------ARAIGDEIEALQRAGHAL--------- 412 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 I +LVR L ++ + I+D +A R ++S Sbjct: 413 -SQIAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERAEIRDALAYLRCVISPA 467 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DDL+F ++ P + I +I R + E + + S + + Sbjct: 468 DDLAFERIVNVPKRGVGDAAIKQIRDVARAAGVPLMEATRLLTESEELKPKLRSTLRGFV 527 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545 + A+ + ++L + + E L+ E Sbjct: 528 QSFERWREQAENMKHTELAEVVLDESGYTEMWQKDRSAEAAGRLENLKELVRSME----- 582 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 + L LE + A + V+IMT+H+AKGLE VFL +F H+ Sbjct: 583 GFENLSGFLEHISLVMDVDSGAGDDAVQIMTLHSAKGLEFDTVFLPGWEEGLFPHQR--- 639 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + K+ EE RL YVG+TRA Sbjct: 640 -----------------------------ALDEQGKAGLEEERRLAYVGITRAR 664 >gi|315503768|ref|YP_004082655.1| uvrd/rep helicase [Micromonospora sp. L5] gi|315410387|gb|ADU08504.1| UvrD/REP helicase [Micromonospora sp. L5] Length = 1134 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 128/1007 (12%), Positives = 246/1007 (24%), Gaps = 174/1007 (17%) Query: 58 QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFN 115 ++ S ++ L ++++ + + + + +R Sbjct: 178 DMSEVDRMPSTITDAVLALAGELDEHLVDPDELAAWTGRFFADVQSRPGRVYADVRKALQ 237 Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + L + Y K +DF D + + + I Sbjct: 238 LQRTRLKLLPLVR-------AYARRKDDFEAMDFADQLARAARVARDHPGVGVI---ERD 287 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235 +L+DE QDTS Q ++ +L + AVGD QSIY + GA Sbjct: 288 RFRVVLLDEYQDTSHAQVVLLNALFG----------GGHPVTAVGDPCQSIYGWRGASAG 337 Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295 + R + G ++ L S+R+ +IL V + + ++ Sbjct: 338 TLDRFPAEFAR---TDGSPADVLSLTTSWRNRPEILGVANTL----------------SV 378 Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355 R++ Q A +A + ++ Sbjct: 379 PLRAAGARVPELHAALSVRDPIPHRTPGGQAGGTVHCALLETYADEADWIADSV---LAA 435 Query: 356 MIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 G + + VLVR R P I R + V L Sbjct: 436 WRGAAGMPGALPEHIPADRRPTTAVLVRLRSQIPAIEAALRA----RGLPVDVVGLGGLL 491 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ 461 D ++D++ R + D + + +L + D+ + + Sbjct: 492 DTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIARSRRELTGD 551 Query: 462 ----------ETETVYEYIQKFANCGISKFQHVIKYIH------ELIHIAQFCSPHDFFT 505 + T+ E + + L+ S + Sbjct: 552 EGPEITVDALDEATLVEALADLGPAQAYS-AEGYARLRSYGMELALLRYRLDQSLPELIA 610 Query: 506 LILGAKKGRQQFISRFGNE-------VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQY 557 I + R G + LD + R + ++L ++ L Sbjct: 611 DIERTIGLDVEVAVRAGRDGAGDAGLARAHLDALGDVAARFSGETPGATLAGFLAYLAAA 670 Query: 558 PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 V+++T H AKGLE VV + V+ H + L Sbjct: 671 EDEERGLAPGEVEVVAGAVQVLTAHAAKGLEWDVVAVAGMTRGVWPGPVRNSDHWLGGLG 730 Query: 614 DDPGIPIWIPQSKSRNNIVSD------------LIKHLKKSTQEEYNRLLYVGMTRASDQ 661 P + + + E RL YV +TR Sbjct: 731 VLPFPLRGDADGLPELALPEAEDQRGVARALTDFTDAWRAHDEREERRLAYVAVTRPRRL 790 Query: 662 LIICKHSNTSNEKKSNQRTWY--------------DMVYDSFHNDERVKKIKLTNSINKD 707 L+ + K+ + + +V T ++ + Sbjct: 791 LLCSGYWWGEGTKRFRGPSVFLREVHDACLAGADGHVVDAWTPEPAGDAVNPTTETVLRA 850 Query: 708 EWIA----------------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751 EW A PE E + + + Sbjct: 851 EWPADPLGTRRPALTEAAALVRRHLADPETARREAAVLATTGAADDAEVARWRREADLLL 910 Query: 752 NEPYILNPSTIDTKGKTN-----------------------LESLLSDNQTFNRGLIIHK 788 E L + + N RG H Sbjct: 911 AERAELARQAEAVEVELPGQLSVTQLVALRRDPEALARTLRRPMPTEPNPYARRGTAFHA 970 Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848 L+ F +L A + L+ + + Sbjct: 971 WLEQRFGTD----------RLLDVDELPGAADEDAAPDEALAELQERFLAGEWAD--RVP 1018 Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907 V V ++I GR+D + + + ++KT QL++Y Sbjct: 1019 VEVEVPFATVIAGVVIRGRMDAVFARPGGRYDVVDWKTGRQPAGREADAA---AVQLAVY 1075 Query: 908 EKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 + P + YV + + A + +P Sbjct: 1076 RLAWAELAGVPVDRVGAAFHYVRDSATVRPADLLDAEGLAALVAAVP 1122 >gi|325198582|gb|ADY94038.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis G2136] Length = 671 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 201/611 (32%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 VGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTTVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + + +++ R ++ EL + Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|315125235|ref|YP_004067238.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913] gi|315013748|gb|ADT67086.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913] Length = 721 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 100/585 (17%), Positives = 200/585 (34%), Gaps = 121/585 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y+EA + ++DF ++++ + ++LK + Q H+L+DE QD Sbjct: 167 QMMLRVYAAYQEACDRAGLVDFAEILLRSYEVLKNNPT---LLRHYQQRFAHMLVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ IQ+ ++ L D + VGD+ QSIY + GA+ + + R Sbjct: 224 TNTIQYAWLKLLAGDTSS----------IMIVGDDDQSIYGWRGAKIENIKRFLTDF--- 270 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RSTA IL + + G S Sbjct: 271 ------DAETIRLEQNYRSTATILKASNALIQNNSERMGKS------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + S + F+ L + AR ++ + + + Sbjct: 306 --LW-------TDGNDGEPISIYAAFNELDE-------ARFVSSKLRSWLNAGNAL---- 345 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +D +L R + ++ + + IKD ++ R Sbjct: 346 ------QDAAILYRSNAQSRVLEEAM----LQEGLKYRIYGGMRFFERQEIKDALSYLRL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480 + +++DD +F ++ +P + + I R E+ ++ Q + Sbjct: 396 VGNRQDDAAFERVINTPARGIGDKTLSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGA 455 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 ++ I + + H+ + + + G + ++ L+E ++ Sbjct: 456 VAKFVELIEHIEDKISDLTLHEQAKYAIQTSGLMAMYQAEKGEKGRARVENLEELISACD 515 Query: 538 RNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + E + S LQ ++ + + V++MT+H+AKGLE P+VF+V Sbjct: 516 QYELPEEEEFSSPLQGFLAYTSLESGE--GQADEHEDAVQMMTLHSAKGLEFPLVFMVGV 573 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F + + EE RL YV Sbjct: 574 EEGMFPSQQSN----------------------------------EETGRLEEERRLCYV 599 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 GMTRA D+L I + + + + + + +I Sbjct: 600 GMTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRI 644 >gi|21244868|ref|NP_644450.1| DNA-dependent helicase II [Xanthomonas axonopodis pv. citri str. 306] gi|21110576|gb|AAM38986.1| DNA helicase II [Xanthomonas axonopodis pv. citri str. 306] Length = 730 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 100/575 (17%), Positives = 190/575 (33%), Gaps = 120/575 (20%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + + + + + A Y+E ++ +LDF +L++ ++LL+ + Sbjct: 156 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 212 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 IL+DE QDT+ IQ+ +R L + +F VGD+ Q+IY + GA Sbjct: 213 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 262 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V R + + L ++RS+A+IL + V + + G Sbjct: 263 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 309 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 QLW N + ++ + + AR + Sbjct: 310 ----------------QLW-------TDSGNGDPIDLYAAYNEVDE-------ARYVVER 339 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ VL R + + ++ Sbjct: 340 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 385 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469 + IKD +A R + ++ DD +F + +P + + ++ R +++E Sbjct: 386 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARASALSLWEAAM 445 Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 A + + I +L + +L R+ + Sbjct: 446 LCTQQNTLAARARNALATFLSLIGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 505 Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + LDE ++ R + + EL++ L A V++MT Sbjct: 506 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGAGQAQAGEEGVQLMT 565 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VFLV +F Sbjct: 566 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 591 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVG+TRA +L++C + Sbjct: 592 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 626 >gi|237729781|ref|ZP_04560262.1| exonuclease V subunit beta [Citrobacter sp. 30_2] gi|226908387|gb|EEH94305.1| exonuclease V subunit beta [Citrobacter sp. 30_2] Length = 1181 Score = 273 bits (698), Expect = 8e-71, Method: Composition-based stats. Identities = 126/874 (14%), Positives = 276/874 (31%), Gaps = 123/874 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + + L + + E K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDELLSEPLTLRDLVITRALAEIRSAVAEEKRRRGELGFDDMLSRLDAALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + + H L +GD K Sbjct: 365 ESGDALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWQ--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+ +FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNTLFSQMDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E + ++ + + + + + P W +S S Sbjct: 467 AFMFREIPFSPVK----------SAEKNQALRFVLHGETQPAMSMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + S ++A DI VLVR R++ L+ L Sbjct: 517 YMAQVCATQIRDWLKAGHSGAAQLVSGKASSPVRASDISVLVRSRQEAALVRDALTQL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++L+ + + +++ E + + L + + + DI + T Sbjct: 575 -AIPSVYLSNRDSVFETLEAQELLWVLQAVMTPERENTLRSALATSMMGLNAQDIEALNT 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 + + V E + + V+ + L + +L G ++ Sbjct: 634 DENAWDAVVEEFDGYRQIWHK--RGVMPMLRAL------MTARQIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGSQLESEHALVRWLSQHILEPDSNASSQQLRLESDKHLVKIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + + + + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRSSFE-------------AVLDLSDAEES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 ++ + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 + + L +I T + E +++ + + Sbjct: 847 PMDAVGLRGAIEALCSNDIACQTPAQPDGEPWQVAQAVSSELSAKILQRKPGDSWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + I + + + + + G +H L + + Sbjct: 907 SGLQQRGQGIAQDLIPRLDIDAAGIGEVIEESGLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGK 854 L +I + N ++ + + E+ Sbjct: 967 PVDPHWVEEQLALGGYDAHWTPILTEWLDAILQAPLNETGVSLSQLSAREKQVEMEFYLP 1026 Query: 855 INCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHH 888 I+ P ++ G ID + Q ++ +YK++ Sbjct: 1027 ISQPLMANQLDALIRQYDPLSAGCPALDFMQVRGMLKGFIDLVFRHQGRYYLLDYKSNWL 1086 Query: 889 VPQEIEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 GEDSSAYTQQAMASAMQAHRYDLQYQLYTLALHR 1120 >gi|330908872|gb|EGH37386.1| exodeoxyribonuclease 5 beta chain [Escherichia coli AA86] Length = 1180 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 295/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGEMQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + ++ Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|110806757|ref|YP_690277.1| exonuclease V subunit beta [Shigella flexneri 5 str. 8401] gi|110616305|gb|ABF04972.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella flexneri 5 str. 8401] Length = 1180 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLLITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 E ++ + + P + W +S S Sbjct: 467 TFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|313159744|gb|EFR59101.1| putative ATP-dependent helicase PcrA [Alistipes sp. HGB5] Length = 858 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 101/676 (14%), Positives = 207/676 (30%), Gaps = 131/676 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y + K+N +DF+DL++ TN LL+ + + + ++ +IL+DE QDT+ Q Sbjct: 195 IYNIYCQRCKRNGAMDFDDLLLQTNILLRD---APDVLARYQEQFKYILVDEYQDTNYAQ 251 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +IR L++ + VGD+ QSIYSF GA+ + +L ++ Sbjct: 252 YVIIRRLSQL----------HSKVCVVGDDAQSIYSFRGAKIENILSFQKDFP------- 294 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + +L ++RST I+ + V S Sbjct: 295 -DAMVFKLEQNYRSTRTIVDAANSVIVRNSKRMEKHCFS--------------------- 332 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + +Y D A + + + I + Sbjct: 333 ------EGDKGEPIRILKAYTDREE--------AEMVVSDLRDKIRQ---------TGDE 369 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + ++L R + ++ R + DH +KD++A R +++ Sbjct: 370 WSEAVILYRTNSQSAVLEDNLR----RRGVPYRIYKGSSFYDHKEVKDMLAYIRLVINPR 425 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS---------KFQ 482 DD +F ++ P + + +I +++E + + K Sbjct: 426 DDEAFKRIVNYPARGIGDTTVQRIAELAAGRGVSMWEAVDTLVAEPAADPVQKTIARKVS 485 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + I L S +DF I + + E +D ++E LN Sbjct: 486 DFVAMIRGLSLARNEKSLYDFGLEIATRSGIIAAYRTENTPEATSALDNIEELLNSMQLF 545 Query: 540 EQNSYSSLQE----------LISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPV 587 ++ + ++ + L+ + + + N+V +MTVH+AKGLE Sbjct: 546 KEQRDAEIRSGERQEDEEATIDEWLQNVMLMTDMDKDDPEDRNKVTLMTVHSAKGLEYKY 605 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647 V++V +F + EE Sbjct: 606 VYIVGLEENLFPSQ----------------------------------RAAESPDGIEEE 631 Query: 648 NRLLYVGMTRASDQLIICKHS---NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 RL YV +TRA + I N + S + + + + + Sbjct: 632 RRLFYVALTRAKVEATISYAEMRFKWGNMEFSRPSCFLREIDPKYVRADFDAGEERPRRP 691 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764 + + +++ + + F + + S Sbjct: 692 QDGAGPSAIDELRRRFDYRFQQKRQADRAGGNNGGQQGGFGGRGSSFGGRSADDQSGPAR 751 Query: 765 KGKTNLESLLSDNQTF 780 + + Sbjct: 752 RFARAAAPQGARPAGR 767 >gi|303237262|ref|ZP_07323832.1| putative ATP-dependent helicase PcrA [Prevotella disiens FB035-09AN] gi|302482649|gb|EFL45674.1| putative ATP-dependent helicase PcrA [Prevotella disiens FB035-09AN] Length = 841 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 106/728 (14%), Positives = 211/728 (28%), Gaps = 124/728 (17%) Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAH 136 T K++ + K+ + + +++ I N + A+ + + Sbjct: 130 KTIVKSLGIDDKKYKASSVHGLISMAKNHLITADAYSNDQAAKERDRAAQMPAVSQIYTT 189 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y+ +++ +DF+DL++NT L ++ + I K + +IL+DE QDT+++Q ++ Sbjct: 190 YQAHCRQSNAMDFDDLLVNTYRLFQEHED---ICKKYAERFQYILVDEYQDTNVVQTAIV 246 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 + L + + + VGD+ QSIYSF GA +L + Sbjct: 247 QLLAQQ----------HQRICVVGDDYQSIYSFRGANIDNILDFQNRF--------NDVK 288 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 + +L ++RST I+ + + S Sbjct: 289 VFKLERNYRSTQKIVEAANSLMKHNSRQIPKDVYS------------------------- 323 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 + + S+ + + A + I+ + +++ + Sbjct: 324 ---KESEGAKISYKPCYSDREE-------AMVVVKEINQL---------KRRQSFEYDAF 364 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 +L R + R I IKD++A R + + D+ + Sbjct: 365 AILYRTNAQSRSFEDELR----KNNIPYQIFGGTAFYQRKEIKDIIAYFRMVANPNDEEA 420 Query: 437 FVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-------YIQKFANCGISKFQHVIKYI 488 F ++ P I K + +++E Y ++K I Sbjct: 421 FKRIVNYPARGIGNTTIQKILDCADEHQVSLWEIVSDPLKYNLAVNKGTLAKINGFTDII 480 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS 545 I + + I+ + E + LDEFL + + Sbjct: 481 TNFIKQLATTDAYTLGSEIIKESGMMAELNRGIEAEDVARRENLDEFLGSLQAFVEGNRE 540 Query: 546 S-------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L + + E+ Y K + + +V +MT+H AKGLE PVVF+V VF Sbjct: 541 EGREEETFLTDFLQEVSLYSDLDK--ATEDKPKVTLMTIHAAKGLEFPVVFIVGLEENVF 598 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 ++ YV MTRA Sbjct: 599 PNQMSATSLRELEEERRLL----------------------------------YVAMTRA 624 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718 I+ N + D + NS ++ Sbjct: 625 EQFCILTNAKNRYRYGSMQFNNPSRFIADIDPKYIAADEEMSLNSGGTGRMPWDRPASSD 684 Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778 + E +K + + E + Sbjct: 685 NFRDYEPNKPYTGSREWESGNFQKGGRWQNANPVASQFRADPKPKITERKAPERAIDPLS 744 Query: 779 TFNRGLII 786 + ++ Sbjct: 745 ARTKQRLM 752 >gi|320539382|ref|ZP_08039051.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str. Tucson] gi|320030507|gb|EFW12517.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str. Tucson] Length = 720 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 103/580 (17%), Positives = 188/580 (32%), Gaps = 116/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ ++L + I + ++L+DE QDT+ I Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNVLVDEFQDTNSI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ I L S + VGD+ QSIY + GA+ + + R + Sbjct: 229 QYAWIHLLAG----------SNSNVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + L ++RST++IL + + + G + LW Sbjct: 273 --GAKTLRLEQNYRSTSNILEAANTLIAHNAGRMGKN---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S F+ L + AR + I Sbjct: 310 -------TDGGQGEPISIYCAFNELDE-------ARFVVNRIKTWQDNGGTL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ +S + IKD +A R I ++ Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQAAMSYRIYGGQRFFERQEIKDALAYLRLISNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P + + R T++ ++ + S Q Sbjct: 402 NDDAAFERVVNTPTRGIGGRTLDVVRQAARDRQLTLWRATRELLHEKVLAGRAASALQRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFTLRNE- 540 + + L H H ++ QQ G I+ L+E + T + Sbjct: 462 TELVDSLAHETAEMPLHIQTDRVIRDSGLFIMYQQEKGEKGQARIENLEELVTATRQYSY 521 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 Q L L + L + A + V++MT+H+AKGLE P+VF+V +F Sbjct: 522 QEEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPLVFIVGMEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 582 SQMSLDESG----------------------------------RLEEERRLAYVGVTRAM 607 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + K + + + +++ Sbjct: 608 QKLTLTYAETRRLYGKEVYHRPSRFIGELPEHCMEEVRLR 647 >gi|294155500|ref|YP_003559884.1| ATP-dependent DNA helicase [Mycoplasma crocodyli MP145] gi|291600036|gb|ADE19532.1| ATP-dependent DNA helicase [Mycoplasma crocodyli MP145] Length = 724 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 110/571 (19%), Positives = 187/571 (32%), Gaps = 115/571 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y E K LDF+DLI+ L K I K + +HIL+DE QD Sbjct: 171 DIVPKVYNLYTEFLIKKGCLDFDDLILKVEYLFDKNPD---IAEKWSKYFSHILVDEFQD 227 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 TS Q+ +I+ + + L VGD Q+IY++ GA +L + Sbjct: 228 TSTSQYRIIQKVC----------NPNTHLTIVGDPDQTIYNWRGANVNLILDFDKDYP-- 275 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST IL +K+ N D Sbjct: 276 ------DAKTIVLNKNYRSTKLILRAANKLIRNNNNRFSKDLD----------------- 312 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 N + + F+ + AR + I+ + Sbjct: 313 -----------TDNPNGKDIEFFHAFNMEAE-------ARWVVQKINELRKQ-------- 346 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 IQ K+I +L R + + IS + IKD +A R Sbjct: 347 --KIQLKNIAILYRSNFYSRAFEEEL----INENISHKIFNGVKFFQRSEIKDALAFLRV 400 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC-------GIS 479 I D ++ ++ P + + K+ T+++Y+ KF Sbjct: 401 IYDGSD-IALERIINVPKRGIGDVTLAKLKKYAEDHNLTLHDYLMKFYKSLPLSPKLIKE 459 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTL 537 + + I + S + +L ++ ID + E + Sbjct: 460 QIFPFLSIIVKYRSALNNNSISIVLSKMLEEIGFYKEIKQDQNISGSAIDNVKELIRSIE 519 Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E + + + LE ++ N + +MTVH+AKGLE VF+V + Sbjct: 520 NWESKNKD--KTIKEYLELVSLLSASDEFDSDPNYISLMTVHSAKGLEFDNVFVVGLTEE 577 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F + ++ + + +D EE RL YV +T Sbjct: 578 IFPSRKALVLNNLTNPSDG----------------------------LEEERRLAYVAIT 609 Query: 657 RASDQLIICKHSN---TSNEKKSNQRTWYDM 684 RA D+L I +N++K R +M Sbjct: 610 RAKDRLFISDSRGLLFETNKEKEPSRFIEEM 640 >gi|289666094|ref|ZP_06487675.1| DNA-dependent helicase II [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 723 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 98/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + + + + + A Y+E ++ +LDF +L++ ++LL+ + Sbjct: 149 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 205 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 IL+DE QDT+ IQ+ +R L + +F VGD+ Q+IY + GA Sbjct: 206 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 255 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V R + + L ++RS+A+IL + V + + G Sbjct: 256 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 302 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 QLW + + ++ + + AR + Sbjct: 303 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 332 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ VL R + + ++ Sbjct: 333 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 378 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469 + IKD +A R + ++ DD +F + +P + + ++ R +++E Sbjct: 379 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 438 Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 A + + + +L + +L R+ + Sbjct: 439 LCTQQNTLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 498 Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + LDE ++ R + + EL++ L + A V++MT Sbjct: 499 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 558 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VFLV +F Sbjct: 559 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 584 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVG+TRA +L++C + Sbjct: 585 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 619 >gi|255323798|ref|ZP_05364924.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141] gi|255298978|gb|EET78269.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141] Length = 1059 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 138/959 (14%), Positives = 272/959 (28%), Gaps = 150/959 (15%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIK 109 ++ + + + ++ L + I + + D + + Sbjct: 153 DVVRNYTGQLEDDRALATITETLLKFSQDIDNGLKDTSHIAEHARDFRADIDNLDKSQKN 212 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + T L ++ + + V+ F + + + + V + Sbjct: 213 GPEYSQKLLEYIHTQERRVQYVPLLEALKKEQSERQVITFGEQMAVAARVARDHPV---V 269 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + Q +++DE QDTS Q ++RSL ++ AVGD Q+IY + Sbjct: 270 GKQQSQRYKVVMLDEYQDTSYAQRVLLRSLF-------GGDQEDLSVTAVGDPMQAIYGW 322 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + G +L +S+R+ + L + + V Sbjct: 323 RGATSENLTAFVEDFPV---APGTPAPKDQLTISWRNPSGALDLANSVAEGVFEGVERPV 379 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 D + H+ G +QL + + + Sbjct: 380 DELSAAPHK-----GEGEIQLAYFDSEAREREFVAE------------------------ 410 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 + KR VLVR + + I + + Sbjct: 411 -----------YLKDQWDKREGDTFSAAVLVRINRHSAPIAAAL----DKAGVPNEIIGL 455 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469 L I+DL+A+ ++ ED + V +L P+ DI + ++ E Sbjct: 456 GGLLWQPEIQDLVAIATMLVRPEDLPAAVRVLAGPICGLGISDIQALASRLRNLAGAREE 515 Query: 470 IQKFANCGIS-----------------------------------------KFQHVIKYI 488 ++ + + V + Sbjct: 516 RLRWEPGMDPEEYLRAQLEDVTAEEPDQRVGLADALADLGERDRYTPQGLARMEEVSAKL 575 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSL 547 L + D F I R + ++R LD+F + +S Y+ L Sbjct: 576 RHLRTYSLSKPLVDIFADIEALFNIRTEVLARGSAGGATHLDKFADIVAGFHGDSLYALL 635 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV---FSHKHIK 604 LE+ A + V+IMT H AKGLE V +V S + + Sbjct: 636 DYFALALEKEDGLDLGEVPAATDRVQIMTAHKAKGLEWEHVCVVHADSSSYSAKAETFLS 695 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 ++ +P +D +P + +N + K EE RL YV +TR L + Sbjct: 696 RIDKVPGDDDYIEVPEDAEKRSDFHNACEEFKKADSAIKAEESARLFYVALTRTESTLTV 755 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA------------- 711 + K+ + + + + V + + + ++D++ Sbjct: 756 TGSGTNNLNGKNKKAPYEYLERLKEQFPQYVVEWSVPDEPSEDDYGESAQFPALQASPEA 815 Query: 712 -------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--- 761 E P+ + E E +Q K D+ P L S Sbjct: 816 VAGADMVLEAMEELPDLSRGETFELWEQEAGALIEEYKALQQPVVDVELPSELTASDMVA 875 Query: 762 -----IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816 + + N RG H L+ R + Sbjct: 876 LRADPLQFARRQRRPVPFKPNSYAKRGTAFHAWLE--------DRFGSPALLGEEELPGI 927 Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQ 875 E +L L + + E V + ++ GR+D + Sbjct: 928 DEPEDFDLEELKEAFLNSEW------AERQPEH-VEAPFEITIGEAVVRGRMDAVFRLED 980 Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934 + ++KT E QL++Y + + + + + YV + F Sbjct: 981 GTWMVVDWKTGRPPQGEAMDAA---KIQLAVYAEAWRRIHGGEKIRAAFYYVHDGYTFE 1036 >gi|78049804|ref|YP_365979.1| DNA-dependent helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926001|ref|ZP_08187367.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118] gi|78038234|emb|CAJ25979.1| DNA helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543597|gb|EGD15014.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118] Length = 723 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 99/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + + + + + A Y+E ++ +LDF +L++ ++LL+ + Sbjct: 149 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 205 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 IL+DE QDT+ IQ+ +R L + +F VGD+ Q+IY + GA Sbjct: 206 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 255 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V R + + L ++RS+A+IL + V + + G Sbjct: 256 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 302 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 QLW + + ++ + + AR + Sbjct: 303 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 332 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ VL R + + ++ Sbjct: 333 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 378 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469 + IKD +A R + ++ DD +F + +P + + ++ R +++E Sbjct: 379 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARASALSLWEAAM 438 Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 A + + I +L + +L R+ + Sbjct: 439 LCTQQNTLAARARNALASFLSLIGQLHAETGQMELAERIDHVLMRSGLREHWAKESRGGL 498 Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + LDE ++ R + + EL++ L + A V++MT Sbjct: 499 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 558 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VFLV +F Sbjct: 559 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 584 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVG+TRA +L++C + Sbjct: 585 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 619 >gi|218768450|ref|YP_002342962.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491] gi|254805228|ref|YP_003083449.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14] gi|121052458|emb|CAM08794.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491] gi|254668770|emb|CBA06672.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14] gi|325128494|gb|EGC51372.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis N1568] Length = 671 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 111/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW ++ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + +++ R ++ EL + Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|312964904|ref|ZP_07779144.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 2362-75] gi|312290460|gb|EFR18340.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 2362-75] Length = 1170 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 131/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 205 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 262 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + ++ + L Sbjct: 263 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIEQLLAEPLSIRDLVITRA 321 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 322 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 380 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 381 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 432 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 433 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 476 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 477 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 532 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 533 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 589 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 590 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 641 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 642 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 695 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 696 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 755 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 756 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 802 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 803 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEAQDAAGLRTCIEALCDDDIAWQTAQI 862 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 863 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 922 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 923 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 979 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L P+ ++ D E+ I+ P Sbjct: 980 LTEWITTVLLAPLNETGISLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1039 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1040 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1099 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1100 QYQLYTLALHR 1110 >gi|294012133|ref|YP_003545593.1| DNA helicase II [Sphingobium japonicum UT26S] gi|292675463|dbj|BAI96981.1| DNA helicase II [Sphingobium japonicum UT26S] Length = 758 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 107/551 (19%), Positives = 171/551 (31%), Gaps = 120/551 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L A Y+ + DF DL+++ +LK+ + Q +I++DE QDT+ Sbjct: 181 QKLYAAYQARLRDVNACDFGDLLLHVLTILKRH---RDVLESYQQRFRYIMVDEYQDTNS 237 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + S + + VGD+ QSIYS+ GAE +LR + Sbjct: 238 SQYLWLRLLAQ----------SSKNICCVGDDDQSIYSWRGAEVANILRFENDFP----- 282 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 II L ++RST IL V + N G + L Sbjct: 283 ---GAKIIRLEQNYRSTPHILGAASGVIAENGNRLGKT---------------------L 318 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + W + ARR+ I ++ Sbjct: 319 WTDIDVGEKVR---VIGVWDGPEE-----------ARRVGEEIESIERGGRSLD------ 358 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ +LVR + T + F + I+D +A R + Sbjct: 359 ----EVAILVRAQHQTREFEDRF----IQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQ 410 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ P + + K+ R E + + Sbjct: 411 PADDLAFERIVNVPKRGLGDKAVEKLHRLARTEGVPLALAAARILDTDEMTPQARRSLGA 470 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I + A + IL + E ++ L E E Sbjct: 471 FIGDLARWRDRAAQLPHAELARQILDESGYTAMLQAERTAESAGRLENLSELARAMEEYE 530 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + LE + A+ +V IMT+H AKGLE VFL +F Sbjct: 531 T--------LGAFLEHVSLVMDNEAQADERKVTIMTIHAAKGLEFDTVFLAGWEEGIFPS 582 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + S EE RL YV +TRA Sbjct: 583 QRALDEGGLNS--------------------------------LEEERRLAYVAITRARK 610 Query: 661 QLIICKHSNTS 671 II +N Sbjct: 611 SCIILHAANRR 621 >gi|167570197|ref|ZP_02363071.1| DNA helicase II [Burkholderia oklahomensis C6786] Length = 786 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 107/747 (14%), Positives = 220/747 (29%), Gaps = 159/747 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + + + K ++ K Q ++ Sbjct: 96 LRAHHRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + +T + L Y++ ++ V+DF +L++ +LL +R Sbjct: 150 QGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F GA Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + R ++I+L ++RS +IL + + + + G + + Sbjct: 257 NVGNMRDFENEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V+++ + ++ + A I Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I +++ T + ++ VL R + I I Sbjct: 334 IRSLVNTG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIPYRVYGGLRF 379 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + +K +A R I + DD +F ++ P I ++ R ++ I Sbjct: 380 FERQEVKHALAYLRLIDNPSDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + I ++ S + ++ A + + R G + ++ L Sbjct: 440 YVTGKAGTSLGAFANLIAKMRAETAQMSLPETVEHVVRASGLAEFYQGEREGQDRLENLQ 499 Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549 E +N L Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGDADPADAVLAPANLADPAQNP 559 Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L L A + V++MTVH AKGLE VF+ +F H++ Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL+YV +TRA ++L Sbjct: 620 ----------------------------------AVESDGLEEERRLMYVAITRAKERLY 645 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 + + ++ + + + K+ P Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKND 750 +++ +P + + Sbjct: 706 GGARDSVVDAAVSAPLPAFANQQREAE 732 >gi|167769939|ref|ZP_02441992.1| hypothetical protein ANACOL_01280 [Anaerotruncus colihominis DSM 17241] gi|167667930|gb|EDS12060.1| hypothetical protein ANACOL_01280 [Anaerotruncus colihominis DSM 17241] Length = 788 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 109/670 (16%), Positives = 210/670 (31%), Gaps = 131/670 (19%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E + + L + + + + +++ + + + Sbjct: 121 AAGELRDRLAAMLGSVASDVNASTFHSACVRILR---REIERIGYGRSFAIYDTDDSIR- 176 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 L L + +K + I + K++L+ D + + + L Sbjct: 177 -LIKAALKELNVDEKRFSPRSILSEIGRAKDELRTPADFAATVGEDYR-----------L 224 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + +DF+D+I+ T + ++ + + ++++DE QD Sbjct: 225 QVVSKVYERYQRQLENANAVDFDDIIMLTVRVFQQYPDA---LETYRRRYRYVMVDEYQD 281 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+E++R L + L VGD+ QSIY F GA + +L+ + Sbjct: 282 TNHAQFELVRLLASE----------SGNLCVVGDDDQSIYKFRGATIENILQFEDTFP-- 329 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 + L ++RST IL + V +G + + G Sbjct: 330 ------GARVFRLEQNYRSTGTILDAANAVIEHNTARKGKTLWTQN---------DTGGK 374 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 V+++ + AR + TI + Sbjct: 375 VRVYRAADEGEE--------------------------ARFLCDTIQENVKNG------- 401 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D +VL R + I I + IKD++A Sbjct: 402 ---ARYADHVVLYRMNAQSQAIERGL----TKAAIPYRIIGGLRFYERKEIKDVVAYLSV 454 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN-----CGISKF 481 I +Q D L ++ P E I + E +TV++ + Sbjct: 455 INNQADTLRLRRIINEPKRKIGESTIAAVAELAAGEGKTVFDVLAHADEYASLGRKAQDL 514 Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRN 539 I +L+ +A + +L + ++ G I+ ++E + R Sbjct: 515 MSFASMIQKLVDLADKVLLDELLDTLLEETGYLRMLQAQGPEGQARIENIEELKSTMHRY 574 Query: 540 EQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 E+ SL + E+ Y + + V +MT+H+AKGLE VF+V +F Sbjct: 575 EEETDEPSLSGFLEEISLYTDLDNYD--SAADMVVLMTMHSAKGLEFDYVFVVGAEEGLF 632 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 EE RL YV +TRA Sbjct: 633 PGMQAMNNP----------------------------------EQIEEERRLAYVSITRA 658 Query: 659 SDQLIICKHS 668 QL I + Sbjct: 659 KKQLYISTAA 668 >gi|56416619|ref|YP_153693.1| DNA helicase II [Anaplasma marginale str. St. Maries] gi|56387851|gb|AAV86438.1| DNA helicase II [Anaplasma marginale str. St. Maries] Length = 671 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 108/612 (17%), Positives = 189/612 (30%), Gaps = 123/612 (20%) Query: 69 LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125 L F Q +I +N P E+ KK + +++ T Sbjct: 132 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 191 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 + + + Y+E K DF DL++ + A + ++ ++++DE Sbjct: 192 CPNIVRDVYYEYQERLKALNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 248 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QD + +Q+ +R + + + + VGD+ QSIYS+ GAE +LR Sbjct: 249 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 298 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + I+ L ++RST++IL + + ++ G Sbjct: 299 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 333 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 LW + H Q + W + A+ I+ I Sbjct: 334 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 364 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 + + +LVR T + I D IKDL+A Sbjct: 365 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVAYL 419 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478 R + + ++D++F ++ P + K+ R ++ E Sbjct: 420 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMIRFGLLPERTS 479 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536 + Q+++ S I I+ + E Sbjct: 480 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMNMLKDEGDAGASKIENIRELFAAV 539 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 E + + + + +N V +MT+H AKGLE P+VFL Sbjct: 540 GNFENA-----TKFLEHISLVTEVD--SPEQANNHVYLMTLHAAKGLEFPLVFLPGWEEG 592 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 VF H+ EE RL YVGMT Sbjct: 593 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 620 Query: 657 RASDQLIICKHS 668 RA +QL I + Sbjct: 621 RAREQLFISCVA 632 >gi|293364067|ref|ZP_06610803.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma alligatoris A21JP2] gi|292552557|gb|EFF41331.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma alligatoris A21JP2] Length = 722 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 109/566 (19%), Positives = 184/566 (32%), Gaps = 115/566 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + HY + LDF+DLI+ LL+ + + K +HIL+DE QDTS Q Sbjct: 176 IYNHYTNYLVEKGYLDFDDLILKVEYLLENN---SDVAKKWSNYFSHILVDEFQDTSSSQ 232 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +++ L + L VGD Q+IY++ GA +L + Sbjct: 233 YHIVQKLCNENTH----------LTIVGDPDQTIYNWRGANVNLILDFDKEYP------- 275 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +IL + + +N + + Sbjct: 276 -DSKTIVLNHNYRSTKNILDAANMLIKHNKNRYSKDLIANNHV----------------- 317 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + E + S AR + I+ + + IQ Sbjct: 318 ----------GEEIEFYH--------GFSMEAEARWVVQKINELRK----------KKIQ 349 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 K+I +L R + IS + IKD +A R I Sbjct: 350 LKNIAILYRSNYYSRAFEEEL----LGESISHKIFNGTKFFQRSEIKDALAFLRVIYDGS 405 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-------ISKFQHV 484 D ++ ++ P E + KI + ++++Y+ +K Sbjct: 406 D-IALERIINVPTRGIGEVTLAKIKKEANNLNISLHDYLINHFKVMPINKNVIKNKIFPF 464 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQN 542 +K I + + +L + +Q D + E + E+ Sbjct: 465 LKIIVKYKSALMKNPINVVLNKMLEDLEFYKQIKQDQNLSGTATDNVQELIRSIAAWEEK 524 Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + + + LE N V +MTVH+AKGLE VF+V ++F + Sbjct: 525 NPD--KGIKEYLELVSLLSASDEYDTEPNYVSLMTVHSAKGLEFDNVFVVGLTERIFPNY 582 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + S +D EE RL YV MTRA ++ Sbjct: 583 KALDSNNFLSSSDG----------------------------LEEERRLAYVAMTRARNK 614 Query: 662 LIIC---KHSNTSNEKKSNQRTWYDM 684 L I + + EKK R +M Sbjct: 615 LFISDSRGYLMDTKEKKEPSRFIKEM 640 >gi|297566348|ref|YP_003685320.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] gi|296850797|gb|ADH63812.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] Length = 726 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 114/700 (16%), Positives = 213/700 (30%), Gaps = 134/700 (19%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76 ++ V+ NK E + + A L ++ + + + Sbjct: 54 EHRVYAGEILAVTFTNKAAGEMKERLGKMVGRAAHDLWVSTFHSAALRILRVYGEWVGLK 113 Query: 77 KF----------TPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125 T K I+ + P ++ L + ++ I + + Sbjct: 114 PGFVVYDDDDQNTLLKEILKDLGLEAKPGAVRAVLDRIKNRLGGISEFLRDAPDY-VAGI 172 Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185 A + Y+++ + +DF DL++ +L + I +K+ Q I +DE Sbjct: 173 LREDAALVYQRYQQSLRAQGAVDFNDLLLLAIELFENHPE---ILHKVQQRARFIHVDEY 229 Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245 QDT+ +Q+ + R L + L VGD QSIY F A+ +L + Sbjct: 230 QDTNPVQYRLTRLLAGE----------NPNLMVVGDPDQSIYGFRNADINNILDFTKDYP 279 Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305 + L ++RST+ IL++ + V + + G Sbjct: 280 --------GAKVYRLEENYRSTSAILSLANAVIAKNALRLEKTLRPV---------KGGG 322 Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 V L+ ++ + A +A I+ + Sbjct: 323 DPVCLFRAPNAREE--------------------------AAFVAREIARL--------- 347 Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 I +L R + L+ R +I + +KD++A Sbjct: 348 -----GNFGQIAILYRTNAQSRLLEEHLR----RAQIPARLVGAVGFFERREVKDILAYA 398 Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFAN--CGISKFQ 482 R ++ D +S ++ P + K + + E ++ + Sbjct: 399 RLAVNPLDSISLRRIVNVPTRGIGASTVAKLLEHAQQHGIPALEAFRQAEAILSRPQQVG 458 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQ 541 ++ + EL A P +F +L A + E + L+E L E Sbjct: 459 AFVELVDELAEAAFETGPAEFLERVLDATDYKTFIKDEPDAEDRLANLEELLRAARDWEA 518 Query: 542 NSYSSLQELISELEQYPPTIKR----------AHSANHNEVRIMTVHTAKGLESPVVFLV 591 +L E + + + A EV +MT+H AKGLE P+VFLV Sbjct: 519 EFGGTLAEFLDTIALTASIEEPAKRVQDGKLEAPREKAEEVTLMTLHNAKGLEFPIVFLV 578 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 + H++ + EE RL Sbjct: 579 GVEENLLPHRNSLN----------------------------------RLEDLEEERRLF 604 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 YVG+TRA ++L + K + D Sbjct: 605 YVGITRAQERLYLSYAEEREIYGKRESTRPSRFLEDIPEG 644 >gi|238789384|ref|ZP_04633170.1| DNA helicase II [Yersinia frederiksenii ATCC 33641] gi|238722527|gb|EEQ14181.1| DNA helicase II [Yersinia frederiksenii ATCC 33641] Length = 720 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 119/700 (17%), Positives = 223/700 (31%), Gaps = 144/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D ++L+ + + Sbjct: 90 FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 I + +IL+DE QDT+ IQ+ IR L + + VGD+ Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGE----------RSNVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + R + I L ++RST++ILT + + + + Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANALIAHNDG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + LW + S F+ L + Sbjct: 303 RMGKN---------------------LW-------TEGAEGEPISLYCAFNELDE----- 329 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 AR + I D +L R + ++ + Sbjct: 330 --ARFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 + IKD +A R I ++ DD +F ++ +P + + + R Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433 Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + A S Q I+ + L H H ++ Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFIELVDSLSHETADMPLHVQTDRVIRDSGLWSM 493 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G + I+ L+E +N T + Q+ L L + L + A + Sbjct: 494 YEQEKGEKGQARIENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L +C + Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619 >gi|148554134|ref|YP_001261716.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1] gi|148499324|gb|ABQ67578.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1] Length = 892 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 116/770 (15%), Positives = 219/770 (28%), Gaps = 131/770 (17%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF----SLLSSF- 72 + WP V+ NK E + + + + + R + L Sbjct: 189 RRAWPSEILAVTFTNKAAREMRERVGRLLGQAVEGMPWLGTFHSVAARMLRRHAELVGLT 248 Query: 73 ----FLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 L + K ++ + +L D + ++ + Sbjct: 249 PSFTILDTDDQLRLLKQLLAAADLDEKRWPARQLAGLIDRWKNRGLTPAEIDAGEAEQFA 308 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 L Y++ + DF DL+++ +LK + Q ++++DE Q Sbjct: 309 NGRGGELYQQYQDRLRAVNACDFGDLLLHMLTILKTH---RDVLADYQQRFRYVMVDEYQ 365 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ Q+ +R + ++ + + VGD+ QSIYS+ GAE +LR +R Sbjct: 366 DTNSSQYLWLRLIAQE----------RKNICCVGDDDQSIYSWRGAEVANILRFERDFP- 414 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 ++I L ++RST IL + + G + Sbjct: 415 -------GAAVIRLEQNYRSTPHILAAASGLIAHNGGRLGKT------------------ 449 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 LW + + W + ARR+ I Sbjct: 450 ---LW---TEAAEGEKVRIVGVWDGPEE-----------ARRVGDEIEAHERGGGKLD-- 490 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 D+ +LVR + T + F + I+D +A R Sbjct: 491 --------DVAILVRAQFQTREFEDRFIA----IGMPYRIVGGFRFYERAEIRDALAYLR 538 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGIS 479 I DDL+F ++ +P + + K+ R E + + Sbjct: 539 TISQPADDLAFERIVNTPKRGLGDKAVAKLHQLARAEGIPLALAAARILGTDELTPQARR 598 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 +++ I + S + +L + E L+ Sbjct: 599 ALGNLVGDIARWRDMLSQLSHPELTRQVLEESGYVAMLQNEKSTEAEGRLENLNELARAM 658 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + A +V +MT+H AKGLE VFL VF Sbjct: 659 E-----DYATLGDFLEHVSLVMDNDAEAETAKVTVMTIHAAKGLEFDTVFLPGWEEGVFP 713 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + ++ EE RL YV +TRA Sbjct: 714 SQRSLDEGGL--------------------------------ASLEEERRLGYVAITRAR 741 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + I +N + W + F + + ++ +++ E + Sbjct: 742 RRCTIIHAAN-----RRIYGQWTSSIPSRFVAELPDQHVEAETTMSGGE-SLWRAQWSEH 795 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + + + Q+ + S + Sbjct: 796 ADPFAHVGRSQGRGPGWQRATAAGGLGSPQAGSRVVEARASAVSFAQPPR 845 >gi|73540567|ref|YP_295087.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134] gi|72117980|gb|AAZ60243.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134] Length = 786 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 111/723 (15%), Positives = 230/723 (31%), Gaps = 154/723 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F++L S + + K ++ + +N K Q ++ Sbjct: 96 LRAHFRDAGLPQTFAILDS---QDQLSALKRLL-KALNVDDEKYPA--KNLQYFINNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + ++ L A Y++ ++ V+DF +L++ +LL+ D IR Sbjct: 150 QGLRPADVEANDDFNRRFVDLYAAYDQQCQREGVVDFAELLLRCYELLRYNDA---IRQH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 +H+L+DE QDT+++Q++ ++ L +P +FAVGD+ QSIY+F GA Sbjct: 207 YQHRFSHVLVDEFQDTNVLQYQWLKLLAGHGT------QNPAAVFAVGDDDQSIYAFRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + R +I+L ++RS IL + + S G + + Sbjct: 261 NVGNMRDFEHEFRVR--------KLIKLEQNYRSHGHILDSANHLISHNSRRLGKNLRTD 312 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V++++ + A + Sbjct: 313 ---------AGHGEPVRVFQAGSDGQE--------------------------ASWLVEE 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I + I + +I +L R + +I I+ Sbjct: 338 IRDQIAQG----------MSRSEIAILYRSNAQSRVIEHAL----FSAGIAYRVYGGLRF 383 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471 + IK +A + + + +D +F ++ P + ++ R ++ E + Sbjct: 384 FERAEIKHALAYLQLLENPRNDAAFGRVVNFPARGIGARSLEQLQDAARQYNCSLAEAVA 443 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530 SK ++ I ++ + + + + A + G + I+ L Sbjct: 444 YVPGAAGSKLAAFVRLIEQMRAETRRMTLAEVVEHVTNASGLITHYRGEKEGQDRIENLQ 503 Query: 531 EFLNFTLRNEQNSYSSLQELIS-------------------------------------- 552 E + L+ L + Sbjct: 504 ELVTAAQAFVVEEGYGLEALAAVIPVGFESRAVQAVQQLAEGDQAQQVLDPEALPVVMTP 563 Query: 553 ---ELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 L A + V++MTVH AKGLE VVF+ +F H++ Sbjct: 564 LVAFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFNVVFITGLEEGLFPHENS----- 618 Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668 +++ EE RL+YV +TRA ++L + Sbjct: 619 -----------------------------AMEQDGLEEERRLMYVAITRARERLYLS--- 646 Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728 + + + + Y + F LT + + + + E Sbjct: 647 -FAQSRVLHGQMRYHVRSRFFEELPEEALKWLTPQQQSYGGVRRQERDNAWGRDWFRKPE 705 Query: 729 TIK 731 + Sbjct: 706 DVP 708 >gi|30064162|ref|NP_838333.1| exonuclease V subunit beta [Shigella flexneri 2a str. 2457T] gi|56480189|ref|NP_708611.2| exonuclease V subunit beta [Shigella flexneri 2a str. 301] gi|30042418|gb|AAP18143.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Shigella flexneri 2a str. 2457T] gi|56383740|gb|AAN44318.2| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Shigella flexneri 2a str. 301] gi|281602176|gb|ADA75160.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Shigella flexneri 2002017] gi|313647883|gb|EFS12329.1| exodeoxyribonuclease V, beta subunit [Shigella flexneri 2a str. 2457T] Length = 1180 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLLITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 E ++ + + P + W +S S Sbjct: 467 TFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|261377453|ref|ZP_05982026.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685] gi|269146180|gb|EEZ72598.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685] Length = 671 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 105/576 (18%), Positives = 189/576 (32%), Gaps = 118/576 (20%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + A Y+E + +DF+DLI LL++ + +R K + + ++L+DE QDT+ Sbjct: 162 TARVYASYQETLQSYQAVDFDDLIRLPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTN 218 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +++ LT + AVGD+ QSIY++ GA + + + + + Sbjct: 219 TCQFTLMKLLTG----------AEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--- 265 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +I+L ++RSTA IL + +KV Sbjct: 266 -----MKVIKLEQNYRSTARILKIANKVIENNPKLFTKK--------------------- 299 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI--SNMIGTDTIFSNGK 367 LW Q+ + + A + I +IG D Sbjct: 300 LWSQLGEGEPVKVV--------------ACQNEQHEADWVVSQIVKQKLIGGDKT----- 340 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 Q D VL R + + R +I + D IKD+++ R Sbjct: 341 ----QYADFAVLYRGKHQARIFEEALR----GARIPYRLSGGQSFFDKAEIKDVLSYVRL 392 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISK 480 + + DD +F+ + +P + + K+ ++YE Q N Sbjct: 393 LANPNDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQTEEALATLNNTNRQH 452 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF----GNEVIDVLDEFLNFT 536 Q + A+ + +L ++ G + + +++ Sbjct: 453 LQAFMDMFGSYRAKAETSEAGELINSLLKEIDYENHLLASEEGKAGEIKWRNVGDLVSWF 512 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 R ++ EL + + + V + T+H AKGLE P VFLV Sbjct: 513 ARKGGEDGKNVIELAQTVALMTLLEGKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEG 571 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 V H +++ EE RL+YVG+T Sbjct: 572 VLPHN-----------------------------------DSIEEGNVEEERRLMYVGIT 596 Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692 RA QL + + + + D Sbjct: 597 RAKRQLTLTHCVKRKKQGTWQFPEPSRFIDEMPQED 632 >gi|90407425|ref|ZP_01215609.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3] gi|90311456|gb|EAS39557.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3] Length = 1196 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 143/927 (15%), Positives = 300/927 (32%), Gaps = 125/927 (13%) Query: 64 ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123 ++ S LT QK +++++K+P + + + ++ Sbjct: 271 SAWASKPSSSLTLPKNLQK-FSQKDLDEKTPKGAP----PKHAVFSAIEAIYSAELSLEN 325 Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 + ++ AH + K+ VL F+DL++ + L+K V + +I +ID Sbjct: 326 TILIKATHWVRAHLNKNKQSQSVLGFDDLLVRLDSALQKS-VDNQLAVQIRNTYPIAMID 384 Query: 184 EVQDTSLIQWEVIRSLTE-DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 E QDT +Q+ + +++ + + K LF +GD KQ+IYSF GA+ ++ ++ Sbjct: 385 EFQDTDPVQYRIFQTIYKLEADAEKEGLEKSAGLFMIGDPKQAIYSFRGADIFTYMQARQ 444 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 + L ++RS+A ++ V+ FS I ++ Sbjct: 445 NVSAHYS----------LDFNYRSSAQMIDAVNTFFSHCPAPF----IYDNDIPFVPIKV 490 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362 + +L V + P + ++ + I N++ Sbjct: 491 PDITRKRL----VIDNADDIAPSALQFFHLQGGENADAFKLSMTDACVNEIKNILLLGQQ 546 Query: 363 F------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 G K+ I+A DI +LVR K+ LI R L ++ SV + + + Sbjct: 547 GKAYLEDEKGNKQAIKADDIAILVRTGKEASLIR---RALLDENINSVYLSLKESVYATS 603 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 DL+ + + L+ ED+ L LF + IF+ Q + + E I +F N Sbjct: 604 LGTDLLFILKACLNPEDERQLRNALGCKLFALTPYQIFE---QLSDGPSWEEKIGQFFN- 659 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536 +Q + L+ + + +L +G + L E L Sbjct: 660 ----YQALWDKSGVLVMLHKLFHEQGITDHLLSLDQGERLLTDLL------HLTELLQKN 709 Query: 537 LRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ L+ ++ K+ + + V++ T+H +KGL+ +VF+ T Sbjct: 710 SAEHDGGFALLRWFSEQVSVEKSQNNEQKQRLESEKDLVQVSTLHKSKGLQYNIVFMPFT 769 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 G + N + +K E RLLYV Sbjct: 770 GLYQKPRDCLFHDPTHQHQL------------YYDLNKDKAHVALTEKEQLAEDLRLLYV 817 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE----- 708 G+TR+ + + S S K++ T + Y + + + Sbjct: 818 GLTRSIQRCYLGIASYKSGRLKNSPLTKSALGYICLQTGKDLLAGDAQALNVHLDKMCLS 877 Query: 709 -----------WIAYEWSTHHPENTPLEREETIKQLMDEQKIPK-----KLFSPIKNDIN 752 ++ +N ++ I +L + Sbjct: 878 SSHISVRSAATHNELIYAAQVQQNELQAPPVFSARIERNWWISSYSSLSRLHTATTQVKT 937 Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH--KRKNFITSYCT 810 E + I+ + + + + G +H L ++I + + + + + Sbjct: 938 ETSEVAILPIEALSDETVLTPFNFPRGAKHGTFLHLLFELIDFQGRDKLQLERLLETQLS 997 Query: 811 KNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSV-------------- 851 + L ++L +P+ + + E+ Sbjct: 998 AHLYDDAPLWAPVFSLWFEQMLNHPLTPQISLKQLLPASKKLEMQFFLSMKTLYSAQVEK 1057 Query: 852 -----------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ--------- 891 +G +N + G ID + +I +YK+++ Sbjct: 1058 LIQTYDALSARAGPLNFKAVQGYLKGFIDLTFEAHGKYYIVDYKSNYLGDSLSDYSSANI 1117 Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNK 918 I + + Q +Y L ++ Sbjct: 1118 HNAMIEHRYDFQYQLYTLALHRLLRSR 1144 >gi|238756289|ref|ZP_04617604.1| DNA helicase II [Yersinia ruckeri ATCC 29473] gi|238705495|gb|EEP97897.1| DNA helicase II [Yersinia ruckeri ATCC 29473] Length = 720 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 119/694 (17%), Positives = 221/694 (31%), Gaps = 132/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + + LK +K + + R Sbjct: 90 FHGLAHRLLRAHHLDANLPQDFQILDSDDQHRLLKRIVKALNLDEKQWPPRQAMWYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + Y+EA + ++DF +L++ ++L + I Sbjct: 150 KDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + +IL+DE QDT+ IQ+ IR L + + VGD+ QSIY + Sbjct: 207 LNHYRERFTNILVDEFQDTNSIQYAWIRLLAGE----------RSNVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R + I L ++RST+ IL + + + + G + Sbjct: 257 RGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSTILKAANTLIANNDGRMGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TEGAEGEPISIYCAFNELDE-------ARFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D +L R + ++ + Sbjct: 334 VNRIKAWQDHGGAL----------NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD +A R I ++ DD +F ++ +P + + + R T+++ Sbjct: 380 QRFFERQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRHTARDRQFTLWQ 439 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 ++ A S Q ++ + L H H ++ + G Sbjct: 440 ATRELLQSQVLAGRAASALQRFVELVDSLAHETADMPLHVQTDRVIRDSGLWIMYEQEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + I+ L+E +N T + Q+ L L + L + A + V++MT+ Sbjct: 500 EKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VF+V +F + Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L +C + Sbjct: 591 -----RLEEERRLAYVGLTRAMQKLTLCYAESRR 619 >gi|238763616|ref|ZP_04624576.1| DNA helicase II [Yersinia kristensenii ATCC 33638] gi|238698094|gb|EEP90851.1| DNA helicase II [Yersinia kristensenii ATCC 33638] Length = 672 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 119/700 (17%), Positives = 222/700 (31%), Gaps = 144/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D ++L+ + + Sbjct: 90 FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 I + +IL+DE QDT+ IQ+ IR L + + VGD+ Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGE----------RSNVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + R + I L ++RST++ILT + + + + Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANALIANNDG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + LW + S F+ L + Sbjct: 303 RMGKN---------------------LW-------TEGVEGEPISLYCAFNELDE----- 329 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 AR + I D +L R + ++ Sbjct: 330 --ARFVVNRIRAWRDNGGAL----------NDCAILYRSNAQSRVLEEALLQTAT----P 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 + IKD +A R I ++ DD +F ++ +P + + I R Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVIRQTARDR 433 Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + A S Q ++ + L H H ++ Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQTDRVMRDSGLWSM 493 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G + I+ L+E +N T + Q+ L L + L + A + Sbjct: 494 YEQEKGEKGQARIENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDESG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L +C + Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619 >gi|91762855|ref|ZP_01264820.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002] gi|91718657|gb|EAS85307.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002] Length = 678 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 105/550 (19%), Positives = 185/550 (33%), Gaps = 122/550 (22%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + L Y++ DF DLI++ +L+K IR +IL+DE QD Sbjct: 170 RTIRPLYKIYQQKLLDLNACDFGDLILHVVKILEKN---QDIRNIYSNNFKYILVDEYQD 226 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ IQ + L+E + L VGD+ QSIYS+ GAE K L ++ + Sbjct: 227 TNYIQSRWLNLLSE----------KHKNLCCVGDDDQSIYSWRGAEIKNFLEFDQVYKNS 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RS+ +IL+V + + +N G + +T + Sbjct: 277 --------KVIRLEENYRSSQNILSVASNLIANNQNRVGKTLKTTM---------EEGDL 319 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 V+L + + A ++ I + Sbjct: 320 VKLNCFKNGKDE--------------------------AIGVSDEIEKKLK--------- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +I +LVR T + + IKD +A R Sbjct: 345 -KKYSFNNIAILVRAIFQTREFEERF----LKIGLPYRILGGTKFYERAEIKDCVAYLRL 399 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------ 480 I +DDL+F ++ +P E I I + ++ +K + K Sbjct: 400 IHQPKDDLAFDRIVNNPKRAIGESTIKLIHEFSKTNAVSLEIASKKLIEENLIKPKTKIG 459 Query: 481 FQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + + + + + + L+L ++ E ++ + E L+ Sbjct: 460 LSSFLFLMDKWRNDINIKKINHVKLLQLVLDESGYSSMLKNKKDLENENRLENIKELLSA 519 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + L + LE + +V +MT+H +KGLE VVFL Sbjct: 520 MKDFDN--------LENFLEHVALATSVDQDWDGEKVNMMTMHGSKGLEFDVVFLPGWEE 571 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F H+ I+ ++ EE RL YVG+ Sbjct: 572 GLFPHQKS--------------------------------IEEKGQNGLEEERRLAYVGI 599 Query: 656 TRASDQLIIC 665 TRA + +I Sbjct: 600 TRAKKKALIS 609 >gi|227357275|ref|ZP_03841632.1| exodeoxyribonuclease V beta chain [Proteus mirabilis ATCC 29906] gi|227162538|gb|EEI47527.1| exodeoxyribonuclease V beta chain [Proteus mirabilis ATCC 29906] Length = 1212 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 146/1028 (14%), Positives = 313/1028 (30%), Gaps = 173/1028 (16%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFLT 75 K LW +++D + + + L K + + + + Sbjct: 238 VKALWRHHCNEIADWITSSGVDKRSYSSRFLPKWIDEITAWATPLETKSYQLPDCLSRFS 297 Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 Q +K T + L +++ + + +RD + + + Sbjct: 298 QATLHEK---TTKGAAPEHALFAEIELLCQQSLTLRDVIIANAIPE-----------IRQ 343 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 E K + L F+DL+ + L++ + + I Q +IDE QDT Q+ + Sbjct: 344 GIENEKMRRGELGFDDLLTRLDKALQR-EGGEALADAIRQRYPVAMIDEFQDTDPQQYRI 402 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 ++ + L +GD KQ+IY+F GA+ +R ++ Q Sbjct: 403 FDTIYGEHTESG--------LLFIGDPKQAIYAFRGADIFTYIRARQ----------QTD 444 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315 L ++RS +++ V+K+F + + + + + + Sbjct: 445 HHYTLNTNWRSAPGMVSAVNKLFLRSKTPFLFDHIPFIEVN----------SAEKNQHMK 494 Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRV 370 + + W + +SL + ++A + A I + + + KR Sbjct: 495 FIYQQKTVAPLNFWLAEGESLSTGNYEQLMASQCAMQIRDWLSAGDNQQAWLIEQDNKRA 554 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + + DI+VLVR R++ LI L SV ++R + + KDL+ L + +++ Sbjct: 555 VTSADIVVLVRSRREALLIRDALDLLSIQ---SVFLSNRESVFETNEAKDLLWLLQAVVT 611 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490 E + L S LF F+ I ++ E + + Sbjct: 612 PEKERVLRASLASALFGFNAQQIDELNQDEQRWNRYVEQFADYFVLWQKR--------GV 663 Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFTLRNEQNSYSSL 547 L + + + +L ++ G ++ + E L + L +E L Sbjct: 664 LPMLRKVMIENQIAENLLASQAGERRLTDIM------HIGELLQETSLQLDSEHALIRWL 717 Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607 + IS + + + ++ N V+I T+H +KGLE P+V L + + ++ Sbjct: 718 AQQISRPDAQAESQQMRLESDKNLVQICTIHKSKGLEYPIVCLPFACNY---QEQKGALY 774 Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-- 665 P S + + E RLLYV +TRA + Sbjct: 775 HDRDEFYAKLDIFNQPDSV----------RLADEERLAEDLRLLYVALTRAKFCCYVGVA 824 Query: 666 ----KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE-----WST 716 + S ++ ++ + + + ++ + + Sbjct: 825 PLVKGNKRKSGLTDLHKNALGYLLQHGEEGNSELLHQSINQLLDDNIKVITLGDTSTHRY 884 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--------------- 761 P T + + I + +S + + L S Sbjct: 885 QSPHTTNIALDAAIFKRKINDNWRITSYSGLTAQHSARGYLFDSADLDALVQSIAPGLDT 944 Query: 762 ----IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817 T ++ S+ + G +H LL+ + + + Sbjct: 945 DAKGEKTAQHSDELSIHHFPRGAVAGTFLHSLLEELDFSQPIDESWMQEQLIAQ---GFE 1001 Query: 818 AKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKIN--------------- 856 K L+ + L P+ + E+ I Sbjct: 1002 EKWTPLLVAWMETLFHTPLNAQGLCLADIPKEHQLDELQFYLPIEKEMSAAQLTALTRQY 1061 Query: 857 -----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY------- 898 + ++ G ID + + ++ +YK++ ++ Sbjct: 1062 DPLSAQCPALNFQQVQGMLKGFIDLVFCWEGKYYVVDYKSNWLGESSEDYTQEAMSNAMR 1121 Query: 899 --THIAQLSIYEKI----LKDSYPNKSLV------CLLI-------YVSEPKVFIIPQNK 939 + Q +Y L+ P+ C L Y +P+ K Sbjct: 1122 DHRYDLQYQLYTLALHRFLQQRLPDYDYQRHFGGICYLFLRGIDADYPGNGVYTYLPEEK 1181 Query: 940 LNKAFAEI 947 +A + Sbjct: 1182 FVEALDAL 1189 >gi|215488138|ref|YP_002330569.1| exonuclease V subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|215266210|emb|CAS10637.1| exonuclease V (RecBCD complex), beta subunit RecB [Escherichia coli O127:H6 str. E2348/69] Length = 1180 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 131/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + ++ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIEQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEAQDAAGLRTCIEALCDDDIAWQTAQI 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L P+ ++ D E+ I+ P Sbjct: 990 LTEWITTVLLAPLNETGISLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] gi|306532210|gb|ADN01744.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] Length = 665 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 105/597 (17%), Positives = 189/597 (31%), Gaps = 118/597 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + + Y + +DF+DLI+ L + + + +ILIDE QD Sbjct: 159 EVYRPVYEEYHAHLRAYHAVDFDDLIVLPIGLFETHPE---VLASYRERFRYILIDEFQD 215 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 TS++Q+ I+ L E+ R L VGD+ QSIYS+ GA + +R +R Sbjct: 216 TSILQYRFIKLLAEE----------HRNLCVVGDDDQSIYSWRGANYENFALFERDFPER 265 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 ++L ++RS IL +++ S N + G+ G Sbjct: 266 --------KEVKLEQNYRSVQTILEAANQLISHNTNRKEKRL-----------WSGRPGK 306 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 ++ S + A IA TI ++ + Sbjct: 307 TSIYLTFPSNEREE------------------------AEYIAETIRTVVLKE------- 335 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I +I VLVR I + I + + IKD++A R Sbjct: 336 --GIPYHEIGVLVRTNSLMAPIEDAF----LRHNIPYKLSGGTSFFERKEIKDIIAYLRV 389 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480 IL+ +DD+S + ++ +P + + ++Y + Sbjct: 390 ILNPDDDVSLLRIINTPRRGIGRQTLHILGEYATEHELSIYSALTSLLYAQGLPPQVART 449 Query: 481 FQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNE------VIDVLDEFL 533 F + I E S + ++ + + + L F Sbjct: 450 FDEFVSLIEEFGERITGRTSIAETVRDLVDRIDYFEYLMQEHRDNEKVARYRYQNLMLFS 509 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLV 591 + R E + + L + L + K +V +MT+H AKGLE VFL Sbjct: 510 DLIERWENDPDNLNPNLGAYLTRISLITKDELDEEDTKGKVNLMTIHAAKGLEFAHVFLA 569 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 + H ++ EE RL Sbjct: 570 GVEEGIIPHARAL---------------------------------EDSETNIEEERRLF 596 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 YV +TRA + L + ++ ++T + + + + + E Sbjct: 597 YVAITRAREALYLTSCRQRRVMREDQEQTPSPFLEELPDHLIETEAPPSDLTEEDVE 653 >gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] gi|151281327|gb|ABR89737.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 760 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 100/660 (15%), Positives = 208/660 (31%), Gaps = 148/660 (22%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 + +D+ ++ L Y++ ++ V+DF +L++ T +LL Sbjct: 138 RNLMYFINGAKDQGLRASAVEAFDDYNRKMVELYEIYDQQCQREGVVDFAELLLRTYELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 + +R HIL+DE QDT+ +Q+ ++ + + +FAVG Sbjct: 198 SRN---QPLREHYQSRFRHILVDEFQDTNDLQYNWLKLMAG----------TQGAVFAVG 244 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + +R + ++I+L ++RS IL + + + Sbjct: 245 DDDQSIYAFRGANVGNMSAFEREFKVE--------NLIKLEQNYRSHGHILDTANTLIAN 296 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + + G V+++ + + Sbjct: 297 NSKRLGKNLHTD---------AGHGELVRIY--------------------------EAT 321 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 S A+ I ++I DI VL R + +I Sbjct: 322 SDLQEAQWIIEEAKSLIAEGAA----------RSDIAVLYRSNAQSRVIEHAL----FSS 367 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 I + +K +A + + + +D +F+ ++ P + ++ Sbjct: 368 GIPYRVYGGQRFFERAEVKHAIAYLQLMDNPHNDSAFLRVVNFPTRGIGARSLEQLQDAA 427 Query: 461 HE-TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + ++Y + A + IK I Q + +++ A + + Sbjct: 428 KQYGISLYAAVPYVAGKAGTSLGAFIKLIEAARFETQNLPLPEMVQVVIDASGLITHYQN 487 Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSS-------------------------------- 546 G + I+ L++ ++ Sbjct: 488 EKEGADRIENLEQVVSAATLFVSEEGFGQDAPALLGPTSQQMAGPAIVTQDGVEILDADA 547 Query: 547 -----LQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 + L + L A + +++MTVH+AKGLE VF+ +F H Sbjct: 548 PLPVVMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGLEEGLFPH 607 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 ++ ++ EE RL+YV +TRA Sbjct: 608 ENS----------------------------------QKEEDGVEEERRLMYVAITRAKR 633 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 +L I S + + + +++ F L+ + + W A+ + Sbjct: 634 RLYIS----FSQTRMLHGQMRFNLKSRFFDEMPEDSLKWLSPKVQQHHWTAHPKAAWEDA 689 >gi|325273939|ref|ZP_08140102.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51] gi|324100910|gb|EGB98593.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51] Length = 728 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 118/721 (16%), Positives = 227/721 (31%), Gaps = 132/721 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + Q S + + ++ + L + Sbjct: 33 GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92 Query: 66 F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109 F + L F Q+ +I + + + D ++ + FI + Sbjct: 93 FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFINGQ 152 Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + L + + YE+A ++ V+DF +L++ DL + + Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + H+L+DE QDT+ +Q+ +R L +L AVGD+ QSIY + Sbjct: 210 LEHYQRRFQHVLVDEFQDTNAVQYAWLRLLAR----------GGASLMAVGDDDQSIYGW 259 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + +I L ++RST IL + + + G Sbjct: 260 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 309 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + + + ++ + AR + Sbjct: 310 -------------------ELW-------TDLGEGEPLTLYAAYNEHDE-------ARYV 336 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 TI +I DI +L R + ++ ++ Sbjct: 337 VETIEGLIKQGNA----------RNDIAILYRSNAQSRVLEEAL----LRERVPYRIYGG 382 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + IK+ MA R I + +D + ++ P E + I RH +++ Sbjct: 383 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWG 442 Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519 + + K I+ I L H + Q+ Sbjct: 443 AMCQLIAAKALKGRAASALGAFIELIEGLAAKVADMPLHTMTQTTIEQSGLITYHQEEKG 502 Query: 520 RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G ++ L+E ++ E + L L + L + + +++MT+ Sbjct: 503 EKGQARVENLEELVSAARNFESTEEDADLSPLSAFLGHASLEAGDSQADEHEDSIQLMTL 562 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VFLV +F HK + Sbjct: 563 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 593 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA QL++ V + + + Sbjct: 594 -----RLEEERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 648 Query: 698 I 698 + Sbjct: 649 L 649 >gi|238784730|ref|ZP_04628733.1| DNA helicase II [Yersinia bercovieri ATCC 43970] gi|238714326|gb|EEQ06335.1| DNA helicase II [Yersinia bercovieri ATCC 43970] Length = 720 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 107/582 (18%), Positives = 195/582 (33%), Gaps = 116/582 (19%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ I Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + VGD+ QSIY + GA+ + + R + Sbjct: 229 QYAWIRLLAGD----------RANVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST++ILT + + + + G + LW Sbjct: 273 --GAETIRLEQNYRSTSNILTAANALIAHNDGRMGKN---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S F+ L + AR + I Sbjct: 310 -------TEGAEGEPISIYCAFNELDE-------ARFVVNRIRAWQDNGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R + ++ Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGGQRFFERQEIKDALAYLRLVSNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + + R T+++ + A S Q Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRSMLQEKVLAGRAASALQRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 ++ + L H H ++ + G + ++ L+E +N T + Sbjct: 462 VELVDSLAHETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSY 521 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 Q+ L L + L + A + V++MT+H+AKGLE P VF+V +F Sbjct: 522 QDEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L +C N K + + +++ T Sbjct: 608 QKLTLCYAENRRLYGKEVNHRPSRFIGELPPECVEEVRLRAT 649 >gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis F0421] gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis F0421] Length = 664 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 93/598 (15%), Positives = 175/598 (29%), Gaps = 122/598 (20%) Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + L Y+++ K +DF+DLI+ L + I + +I++DE Q Sbjct: 156 HDAYRLLYQEYQDSLKIYNAVDFDDLIMLPIQLFTEHPE---ILAEYKNRYRYIMVDEFQ 212 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DTS+ Q+ ++ + E+ + VGD+ QSIYS+ GA + + ++ + Sbjct: 213 DTSIQQYNFMKLIAEN------------NVCVVGDDDQSIYSWRGANFENIRMFEKDFPQ 260 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 I+L ++RST IL + V + N + + S Sbjct: 261 LVE--------IKLEQNYRSTGTILAAANGVIAHNTNRKEKALWSGN---------DSGK 303 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 ++++ ++ A IA I + Sbjct: 304 PIEIFIPET--------------------------ETVEADFIADMI---------LTEK 328 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 + D VL+R + I + I + IKD+++ R Sbjct: 329 ARENRSFSDFGVLIRANSLSRAIEESF----LNANIPYKMSGGTSFFQRKEIKDVISYLR 384 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------- 479 + + +DD++ + ++ +P + + I E + Sbjct: 385 VVANPDDDINLLRIINTPRRGIGKRTVEIISHIATEQKCSIRAAINNLLANSEGGSIKDK 444 Query: 480 ---KFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNEVID------VL 529 Q I + ++ I + + Sbjct: 445 GLADVQSFADLISRHRKLLLSGKGLAQKVRKLVEEINYFDYLIQEYQKNEKAARYKFLNI 504 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVV 588 + + E N + L L + + + EV+IMT+H AKGLE PVV Sbjct: 505 ERLIQSIEEWEHNPDNFDVNLYDYLNRITLLTRDDMNEEDKGEVQIMTIHAAKGLEFPVV 564 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 F+ T + H EE Sbjct: 565 FIAGTEEGIIPHARSM---------------------------------EENDGDIEEER 591 Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 RL YV +TRA +L I + + + + + Sbjct: 592 RLFYVAITRAQQKLYITSCRTRKKMGTFRECAPSPFLEEIPADLVHYHEPDAQAEAAD 649 >gi|313837606|gb|EFS75320.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2] gi|314927513|gb|EFS91344.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1] gi|314972545|gb|EFT16642.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3] Length = 1071 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 140/999 (14%), Positives = 299/999 (29%), Gaps = 122/999 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W + + + + L KA I + L++ + + Sbjct: 122 AWDGINTGAHLMTGARAYQLASEVVVGLDKAPLAATHLGPTPIAQAVVKLAAAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKSTLASLTLAKYLNAH 136 P E+ K ++ L + + R ++ + L A Sbjct: 182 PD------EVRKADARWRQMLLDAPTKKGGGRYADIDTWLSRVDEREEFL-----ELVAA 230 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y+E KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ Sbjct: 231 YQELKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVL 287 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 +L F ++H + AVGD Q+IY + GA +L R + Sbjct: 288 AAL---FSGPDSSHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPDK---EWNPAQ 341 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 ++ L + R I+ + + + G V + + +V+ Sbjct: 342 VLSLTTNRRCADQIINAANMASEELRERLSSTMNFDNDAP-----AGDRADVAVGQPLVA 396 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 ++ ++ + R A + I D Sbjct: 397 PEGNRPGEV---------TVAAYPDWAEECRACADIVVEAKERGIITH--------WSDA 439 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 +LVR+ D + + + V + L I ++A R ++ ++DD + Sbjct: 440 AILVRRNSDVADLYDAL----STRDVPVRLANLSGLLRLPDIAMVVAHLRLLVDRQDDAA 495 Query: 437 FVCMLKSPLFNFSEDDIFKICTQR----------------HETETVYEYIQKFANCGISK 480 +L SP DD+ + + + + + + G + Sbjct: 496 MATLLASPRLGLGTDDLAMVYRRARVLAKTRAQADGLDPDDVEVHLCDAVMERRPGGHER 555 Query: 481 FQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534 QH + + I Q SP D LI + + D LD + Sbjct: 556 LQHALARVCAEIVDVEAHQGDSPDDLVLLIEAITGLVDDMAADDPHRSAARRDHLDALWD 615 Query: 535 FTLRNEQNSY----SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 ++ + + ++ E + + RA + + + V + TVH AKGLE P+V + Sbjct: 616 EIREARRSDPTMTTAGIVAWLAAEEDFGDGLARAATDDRDAVTVSTVHGAKGLEWPLVMI 675 Query: 591 VDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 D VF ++PS + P S S + + + + S Sbjct: 676 PDMAQGVFPSTASPDNFTSVAAVLPSFARGDANDVNHPASGSVADAKAYVAALKEDSQWA 735 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN--- 702 E RL YV +TRA ++L++ H + K + Y + E + N Sbjct: 736 EA-RLAYVALTRAKERLVVSWHKWSPYRKAGLEPGRYAGLLADMLGTEWPDFGERPNNDV 794 Query: 703 ------SINKDEWIAYEWSTHHPENTPL-----------EREETIKQLMDEQKIPKKLFS 745 + ++ + + + +K + + Sbjct: 795 QAGTSWPVIAEDVDHGPIDNVYQSVDDPGQADRVNTWRSDADALLKDARRRIDLEDDVML 854 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 P + ++ LN + + + ++ G H+ + Sbjct: 855 PPRLTTSQMVRLNANPRAFREELRRPMPRPADRGSGIGTAFHEWVSRRLAPTAPIPLFDA 914 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---VSVSGKINCPKKDI 862 + + + A + + +++ Sbjct: 915 DEIAELEEDDFAPEVVAAEPGGAEG-HALRSLCQAFEESRWVDATVLAIEKSFVMTIGQT 973 Query: 863 IISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK- 918 ++ GR+D + + + ++KT + QLSIY + Sbjct: 974 VVRGRLDAVVADPDHPGDELVIDWKTSRPGSADP--------LQLSIYRLAWAQARGIDL 1025 Query: 919 -SLVCLLIYVSEPKVFI----IPQNKLNKAFAEISTKIP 952 + + +V K + +++ S+ P Sbjct: 1026 SRVRAVFHHVGANKTISAEPFLDADEVAVMLTTASSGGP 1064 >gi|92118249|ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91801143|gb|ABE63518.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis X14] Length = 833 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 99/579 (17%), Positives = 175/579 (30%), Gaps = 140/579 (24%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L A Y+ K DF DL++ L ++ + + IL+DE QDT++ Q Sbjct: 204 LYAAYQARLKILNAADFGDLLLENIRLFREHPD---VLRQYQGRFKFILVDEYQDTNVAQ 260 Query: 193 WEVIRSLTE------------------------------DFFVGKNTHSSPRTLFAVGDE 222 + +R L++ S P+ + VGD+ Sbjct: 261 YLWLRLLSQAPSQSLPGLTRQSVVSPEDGSPGLDASRRPGDDALTKNISPPKNICCVGDD 320 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GAE +LR +I L ++RST IL + + E Sbjct: 321 DQSIYGWRGAEVDNILRFDHDFP--------GAKVIRLERNYRSTGHILAAASHLIAHNE 372 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G + + ++ + T +DS + Sbjct: 373 GRLGKTL----------------------------RTEDVDGEKVTVTGCWDSEEE---- 400 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR I I + + +I +LVR L + Sbjct: 401 ---ARGIGEEIEQLQRAGE----------KLNEIAILVRASFQMREFEDRFVTL----GL 443 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRH 461 + I+D +A R I S DDL+F ++ P + + + R Sbjct: 444 PYRVIGGPRFYERAEIRDALAYLRLINSPADDLAFERIVNVPKRGLGDATVQMLHEIARK 503 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 + E + + + ++ + + ++L + Sbjct: 504 RQIPLSEAARAVVETDELRPKARGSLRALLDSFDRWRVQRETMPHTELVEIVLDESGYTE 563 Query: 516 QFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572 + + + L E + E L LE + R + + V Sbjct: 564 MWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDRDGGPDEDAV 615 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H+AKGLE VFL +F H+ Sbjct: 616 SVMTLHSAKGLEFDNVFLPGWEEGLFPHQR------------------------------ 645 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + ++ EE RL +VG+TRA + + +N Sbjct: 646 --ALDEQGRAGLEEERRLAHVGLTRARRRAKLYFATNRR 682 >gi|304384333|ref|ZP_07366744.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973] gi|304334649|gb|EFM00931.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973] Length = 789 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 101/677 (14%), Positives = 191/677 (28%), Gaps = 127/677 (18%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y E +K+ +DF+DL++ T+ L + D + K IL+DE QDT+ +Q Sbjct: 179 IYTTYCERCRKSNAMDFDDLLVYTHQLFNEHDD---VLQKYRDRFRFILVDEYQDTNFVQ 235 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ L E + R + VGD+ QSIY F GA +L + Sbjct: 236 QSIVTRLAE----------AHRRICVVGDDAQSIYGFRGANIDNILDFQEKF-------- 277 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + +L ++RST I+ + + S R + + L Sbjct: 278 ADAEMFKLEQNYRSTQRIVLAANSLIKHNRRQIPKDIFS---------RNDKGERLTLKP 328 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + A + I + D Sbjct: 329 AYSDTEE--------------------------AMIVCNDIRRIHRAD---------ACA 353 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D VL R + R I IKD++A R + + + Sbjct: 354 YSDFAVLYRTNSQSRSFEEQLR----KQGIPYRIYGGLSFYQRKEIKDVIAYFRLVANPD 409 Query: 433 DDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGIS-------KFQHV 484 D+ +F ++ P + + K + + + ++ A G K + Sbjct: 410 DEEAFRRIINYPARGIGDTTVGKILSAANAHGVSPWTVVKSPARYGADVRGTTVTKIETF 469 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539 I + ++ I+ E + ++EFL Sbjct: 470 RTLIMNFVEAMPQTDAYELGKNIMKDSGITADIFGDTTPEGLSRQENIEEFLGAMQDFVS 529 Query: 540 -----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 + S+ + + E+ + + V +MT+H+AKGLE P VF+V Sbjct: 530 IRQEEGRGEEVSIADFLQEVALLADLD-SDDGNDSDRVALMTIHSAKGLEFPNVFIVGME 588 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 +F YV Sbjct: 589 ENIFPSPRACDSQRELEEERRLL----------------------------------YVA 614 Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714 +TRA + I+ N + T + + V+ + + + Sbjct: 615 ITRAERRCILTCARNRFRYGRVEFDTPSRFLREIDPQYMTVESEMSASYGQQRYGRRGGY 674 Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-----PSTIDTKGKTN 769 +N+ + + + + PS T Sbjct: 675 DESRYQNSRPVADRFRADPQPRITAHRPIEPATPPASFRRAPASQPIETPSVGSTFAIAV 734 Query: 770 LESLLSDNQTFNRGLII 786 E + +++ F G I+ Sbjct: 735 QEGDVIEHERFGIGRIL 751 >gi|257468110|ref|ZP_05632206.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] gi|317062395|ref|ZP_07926880.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] gi|313688071|gb|EFS24906.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] Length = 725 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 113/578 (19%), Positives = 201/578 (34%), Gaps = 121/578 (20%) Query: 107 FIKIRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 K+++ + ++ + + + Y KKN +DF D++INT LL+ Sbjct: 143 ISKLKEEEVSADDYEKSENKYNMNAVVVAEIYRRYNLTLKKNNGMDFSDILINTAKLLEI 202 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 D I K+ + +I++DE QDT+ IQ+++I + + L VGDE Sbjct: 203 PD----ILNKVQDKFRYIMVDEYQDTNNIQYKIINKIAGKY----------GNLCVVGDE 248 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY F GA + +L ++ +++L ++RST+ IL + V S Sbjct: 249 NQSIYGFRGANIQNILDFEKDYPN--------AEVVKLEENYRSTSVILDAANAVISNNS 300 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 +A+ LW + ++ + D + + Sbjct: 301 SARDKK---------------------LW-------TKKTTGEKITLLQCNDGRQEVNII 332 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 GK + + +D +L R + L + I Sbjct: 333 I-----------------EEIIKGKNQGKKYRDFTILYRTNAQSRLFEEGF----LRFNI 371 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH- 461 IKD++A I + +D L+ +L P + + KI Sbjct: 372 PYKIFGGMQFYQRAEIKDIVAYLAVINNPKDSLNLSRILNVPKRKIGDKSLEKINEFASV 431 Query: 462 ETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 T++E + + + K + ELI +++ + F ++ + K Sbjct: 432 NGLTLFEALGRANEIDTLTANMKIVLEEFHKMMMELIEMSESEPVSELFDKVIKSIKYFD 491 Query: 516 QFIS--RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEV 572 S I ++E N E+ +L+E + + T + V Sbjct: 492 YLESNYEDSENRISNIEELRNSITEMEKIIETLTLREYLENISLVSATDN--LEEEKDYV 549 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 ++MT+H +KGLE P VFLV T +VF K Sbjct: 550 KLMTIHNSKGLEFPTVFLVGTEDEVFPGK------------------------------- 578 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + EE RL YV +TRA D+L I ++ Sbjct: 579 ---KADFEPRELEEERRLCYVAITRAEDKLYISYAASR 613 >gi|328907789|gb|EGG27552.1| putative ATP-dependent DNA helicase [Propionibacterium sp. P08] Length = 1071 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 140/999 (14%), Positives = 299/999 (29%), Gaps = 122/999 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W + + + + L KA I + L++ + + Sbjct: 122 AWDGINTGAHLMTGARAYQLASEVVVGLDKAPLAATHLGPTPIAQAVVKLAAAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKSTLASLTLAKYLNAH 136 P E+ K ++ L + + R ++ + L A Sbjct: 182 PD------EVRKADARWRQMLLDAPTKKGGGRYADIDTWLSRVDEREEFL-----ELVAA 230 Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196 Y+E KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ Sbjct: 231 YQELKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVL 287 Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256 +L F ++H + AVGD Q+IY + GA +L R + Sbjct: 288 AAL---FSGPDSSHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPDK---EWNPAQ 341 Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316 ++ L + R I+ + + + G V + + +V+ Sbjct: 342 VLSLTTNRRCADQIINAANMASEELRERLSSTMNFDNDAP-----AGDRADVAVGQPLVA 396 Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376 ++ ++ + R A + I D Sbjct: 397 PEGNRPGEV---------TVAAYPDWAEECRACADIVVEAKERGIITH--------WSDA 439 Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436 +LVR+ D + + + V + L I ++A R ++ ++DD + Sbjct: 440 AILVRRNSDVADLYDAL----STRDVPVRLANLSGLLRLPDIAMVVAHLRLLVDRQDDAA 495 Query: 437 FVCMLKSPLFNFSEDDIFKICTQR----------------HETETVYEYIQKFANCGISK 480 +L SP DD+ + + + + + + G + Sbjct: 496 MATLLASPRLGLGTDDLAMVYRRARVLAKTRAQADGLDPDDVEVHLCDAVMERRPGGHER 555 Query: 481 FQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534 QH + + I Q SP D LI + + D LD + Sbjct: 556 LQHALARVCAEIVDVEAHQGDSPDDLVLLIEAITGLVDDMAADDPHRSAARRDHLDALWD 615 Query: 535 FTLRNEQNSY----SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 ++ + + ++ E + + RA + + + V + TVH AKGLE P+V + Sbjct: 616 EIREARRSDPTMTTAGIVAWLAAEEDFGDGLARAATDDRDAVTVSTVHGAKGLEWPLVMI 675 Query: 591 VDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 D VF ++PS + P S S + + + + S Sbjct: 676 PDMAQGVFPSTAGPDNFTSVAAVLPSFARGDANDVNHPASGSVADAKAYVAALKEDSQWA 735 Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN--- 702 E RL YV +TRA ++L++ H + K + Y + E + N Sbjct: 736 EA-RLAYVALTRAKERLVVSWHKWSPYRKAGLEPGRYAGLLADMLGTEWPDFGERPNNDV 794 Query: 703 ------SINKDEWIAYEWSTHHPENTPL-----------EREETIKQLMDEQKIPKKLFS 745 + ++ + + + +K + + Sbjct: 795 QAGTSWPVIAEDVDHGPIDNVYQSVDDPGQADRVNTWRSDADALLKDARRRIDLEDDVML 854 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 P + ++ LN + + + ++ G H+ + Sbjct: 855 PPRLTTSQMVRLNANPRAFREELRRPMPRPADRGSGIGTAFHEWVSRRLAPTAPIPLFDA 914 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---VSVSGKINCPKKDI 862 + + + A + + +++ Sbjct: 915 DEIAELEEDDFAPEVVAAEPGGAEG-HALRSLCQAFEESRWVDATVLAIEKSFVMTIGQT 973 Query: 863 IISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK- 918 ++ GR+D + + + ++KT + QLSIY + Sbjct: 974 VVRGRLDAVVADPDHPGDELVIDWKTSRPGSADP--------LQLSIYRLAWAQARGIDL 1025 Query: 919 -SLVCLLIYVSEPKVFI----IPQNKLNKAFAEISTKIP 952 + + +V K + +++ S+ P Sbjct: 1026 SRVRAVFHHVGANKTISAEPFLDADEVAVMLTTASSGGP 1064 >gi|229593437|ref|YP_002875556.1| DNA-dependent helicase II [Pseudomonas fluorescens SBW25] gi|229365303|emb|CAY53652.1| DNA helicase II [Pseudomonas fluorescens SBW25] Length = 727 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 115/641 (17%), Positives = 207/641 (32%), Gaps = 124/641 (19%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + LS F Q+ ++ + I + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S L + + YE A + V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACVRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + HIL+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + I L ++RSTA IL + + + Sbjct: 252 DQSIYGWRGAKIENIYQYSEDFP--------DAVTIRLEQNYRSTAGILKAANALIANNT 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDGGEGEAINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T + DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPARGIGEKTVEAIRDHARH 434 Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E ++ ++ I L H ++ Sbjct: 435 ADVSMWEAMRLLIANKGLTGRAAGALGVFVELIENLAAKCAEMPLHLMTQTVIEQSGLIA 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570 + G ++ L+E ++ E L L + L + + Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARAFENTEEDEELTPLAAFLGHASLEAGDTQADEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA L++ Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVMTYAETRR 621 >gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054] gi|289693592|gb|EFD61021.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054] Length = 650 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 99/634 (15%), Positives = 179/634 (28%), Gaps = 102/634 (16%) Query: 8 SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67 + E E + + + + L ++ Sbjct: 79 AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135 Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127 LL K + + +LK +L + + + Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y+ + LDF+DLI T +L+ I + H+L+DE QD Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ ++R L N P L VGD QSIY+F GA + + +R Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RST +IL+ + V + + Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + AR +A I + Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I D+ V R + + + I + I+D++A R Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478 + + D +S +L +P + + + + + A Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483 Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 ++ EL + +L R++ + + +D L+E ++ Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542 Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581 + L LE+ H V +MT+HTAK Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 GLE PVVF+ +F H S + Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPTELSRSGG 636 >gi|295688867|ref|YP_003592560.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756] gi|295430770|gb|ADG09942.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756] Length = 806 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 101/604 (16%), Positives = 182/604 (30%), Gaps = 120/604 (19%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L Y+E + DF DL+++ L + + + ++++DE QDT++ Q Sbjct: 209 LYRQYQERLRILNACDFGDLLLHNISLFTGHPD---VLDEFQRRFKYVMVDEYQDTNVAQ 265 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + +R L + + + VGD+ QSIY + GAE +LR +R Sbjct: 266 YLWLRLLAQ----------GRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------- 308 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 ++ L ++RST IL + + + G + LW Sbjct: 309 -GAKVVRLERNYRSTEHILAAASGLITTNKGRLGKT---------------------LW- 345 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 ++ + +D + R +A I + Sbjct: 346 ------TEAKGGEKVKVSGVWDGEAES-------RLVADEIERAKKAGR----------K 382 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 + +LVR L+ I + I+D A R I S + Sbjct: 383 YSQMAILVRASFQMRAFEERFVMLQ----IPYKVVGGPRFFERAEIRDAHAYLRLIQSPD 438 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485 DDL+F ++ +P + + K+ R E + E + + + I Sbjct: 439 DDLAFERIVNTPKRGIGDTSVQKLLQIARLEGISTVEAARVIIGSDDLPARTRTALSNFI 498 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542 + + + +L G ++ L E + + Sbjct: 499 RDLDRWRSMVGSVHHQRLLETVLEESGYTDALRLDKGPTSQTRLENLKELVQSMGAFDT- 557 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 L + LE + A + V IMT+H+AKGLE P+VFL VF + Sbjct: 558 -------LEAYLEHVSLVMDLDREATGDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQR 610 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + + EE RL YVG+TRA ++ Sbjct: 611 S--------------------------------MDDKGEKGLEEERRLAYVGITRAREEA 638 Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722 I +N + + V + P + Sbjct: 639 RISFVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTS 698 Query: 723 PLER 726 + Sbjct: 699 AFQA 702 >gi|291303528|ref|YP_003514806.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM 44728] gi|290572748|gb|ADD45713.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM 44728] Length = 762 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 104/758 (13%), Positives = 221/758 (29%), Gaps = 127/758 (16%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LS 70 + + P ++ NK + + + + +A+ + + L Sbjct: 62 VRGVHPGEILAITFTNKAAAEMRDRVSSVVGNRARMMWVLTFHAACMRILRREHERLNLK 121 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF--NTYKMFKSTLASLT 128 S F + ++ Q D + + ++++ M Sbjct: 122 STFTVYDSDDSRRLMQQVARDMELDKRHTPRGLLASVSRLKNELIDPDAAMAAVETPHHR 181 Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 Y+E + LDF+D+I +T L + + + + H+++DE QDT Sbjct: 182 TVAEAYKRYDERLRAAHALDFDDIIGHTVHLFR---AYPQVAREYRRRFRHVMVDEYQDT 238 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+E++R+L D + S L VGD QSIY+F GA + +L +R Sbjct: 239 NHAQYELVRALVGDDATDEEVPPSQ--LCVVGDADQSIYAFRGATIRNILEFERDFP--- 293 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + I L ++RST IL + V + + + + + R Sbjct: 294 -----DATTILLEQNYRSTQTILDAANGVIRKNPSRKDKKLWTDSGPGAKIKRYDA---- 344 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 + A +A I + +D Sbjct: 345 -------------------------------DNEHDEAAWVAERIDALADSD-------- 365 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 ++ +D+ V R + + I + ++D +A R Sbjct: 366 -GVKPRDVAVFYRTNAQSRVFEDAF----IRRGIPYKVVGGVRFYERKEVRDALAYLRLT 420 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKF 481 ++++D +S ++ P + + + + + + + Sbjct: 421 VNEDDIVSGRRVVNVPKRGIGDRAVACVDALADREQISFGAALRRVDEAVGISTRAAGGV 480 Query: 482 QHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 + + + P + +L + + + +D L E ++ Sbjct: 481 KKFVAVLDAARERVDAGEPPEVVLETLLNDSGYLAELNASTDPQDEARVDNLQELVSVAR 540 Query: 538 RNEQN-----------SYSSLQELISELEQ-YPPTIKRAHSANHNEV-RIMTVHTAKGLE 584 + ++ + ++ A+ + V +MT+HTAKGLE Sbjct: 541 EYTERVEAEVDVDSDVPGPTVANFLEQVSLVADADQIPDPEADSDGVVTLMTLHTAKGLE 600 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF H+ + Sbjct: 601 FDVVFLSGMDQGVFPHERSLG----------------------------------EAKEM 626 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704 EE RL YVG+TRA L + + S + + + ++ +++ Sbjct: 627 EEERRLAYVGITRARQLLHVSRAETRSAWGQPQFHPPSQFLEEMPGELLEAERAVAKSAL 686 Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742 + + + D K Sbjct: 687 GIPGVRRGMSTAELTTPKRPAGDIPVLSAGDRVSHDKW 724 >gi|209761118|gb|ACI78871.1| DNA helicase RecB [Escherichia coli] gi|320645713|gb|EFX14698.1| exonuclease V subunit beta [Escherichia coli O157:H- str. 493-89] gi|320651013|gb|EFX19453.1| exonuclease V subunit beta [Escherichia coli O157:H- str. H 2687] Length = 1180 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|327314684|ref|YP_004330121.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289] gi|326946329|gb|AEA22214.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289] Length = 842 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 105/579 (18%), Positives = 173/579 (29%), Gaps = 120/579 (20%) Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 + YE ++ +DF+D+++ T L + Sbjct: 160 ADEYAEDRAATERDRNARM-PAVHLIYKAYEARCRQANAMDFDDILLYTYLLFRDN---R 215 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 IR K Q+ +IL+DE QDT+ Q +I L E + R + VGD+ QSIY Sbjct: 216 EIREKYGQQFEYILVDEYQDTNYAQVNIISLLAE----------THRRICVVGDDYQSIY 265 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 SF GA +L + + +L ++RST I+ + + E Sbjct: 266 SFRGANIDNILDFRNKF--------TDARLFKLERNYRSTQFIVQAANSLMKHNE----- 312 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 I G L++ S + A Sbjct: 313 -----RQIPKEVYSKEAAGDKVLYKPCYSDRE-------------------------EAM 342 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 +A + + D + VL R + R I Sbjct: 343 AVAAELKRIRHGD---------SCDYDNFAVLYRTNAQSRPFEDEFR----KQGIPYKII 389 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE--- 464 IKD++A R + + +D+ +F ++ P + + KI + Sbjct: 390 GGLSFYQRKEIKDIIAYFRLVANPDDEEAFRRVINYPARSIGNTTVQKIIACAQQHAVSL 449 Query: 465 -----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + EY ++K I I A + ++ I+ S Sbjct: 450 WETILSPAEYGLDVNKGTLAKLSSFRMLISSFIKKAALTNAYELGCEIIEKSGVGADIRS 509 Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANH-NE 571 E + L+EF++ +E L L++ + + Sbjct: 510 GNEPEDLARRENLEEFMSAMQGFVDTGREEGREENVYLADYLQEVALYTDADKEEDDVPK 569 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V +MT+H AKGLE P VF+V +F Sbjct: 570 VTLMTIHAAKGLEFPTVFVVGLEENIFPSPMSSGS------------------------- 604 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 K EE RLLYV +TRA I+ N Sbjct: 605 ---------KRGIEEERRLLYVAITRAERHCILTNAKNR 634 >gi|238760477|ref|ZP_04621614.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia aldovae ATCC 35236] gi|238701319|gb|EEP93899.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia aldovae ATCC 35236] Length = 1182 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 119/887 (13%), Positives = 268/887 (30%), Gaps = 142/887 (16%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + D + L + ++ K++ L F+DL+ + L+++ Sbjct: 294 LFSVIDTIYEQPLTLRDLILARAISEIRTSVQQEKRQRAQLGFDDLLSKLDAALQQQG-G 352 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I +IDE QDT Q+ + +L L +GD KQ+I Sbjct: 353 ELLAQSIRSRYPVAMIDEFQDTDPQQYRIFHTLYGG--------QGECGLLLIGDPKQAI 404 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ +R + T L ++RS+ ++ V+++FS+ ++ Sbjct: 405 YAFRGADIFTYIRARSEVSAHYT----------LETNWRSSFPMVRSVNRLFSLVDSPFL 454 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + + + + + + P W + + ++A Sbjct: 455 FEQIPFINVA----------AAEKNSGLSFEIKGKKQPAMHFWLQSGEGVGVSEYQQLMA 504 Query: 347 RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 R+ A I + + + + R +QA DI +LVR R + L+ L Sbjct: 505 RQCAAQIRDWLTAGQQGLANLVTATGSRPVQASDITILVRSRAEAALVRDALSAL---AI 561 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + D KDL+ L + +L+ E + + + + + + + Sbjct: 562 PSVYLSNRDSVFDTAEAKDLLWLLQAVLAPEQERALRSAMATGMLGLDAQMLDALNHDER 621 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 + + + ++ + V+ + E+I +L G ++ Sbjct: 622 AWDALVDEFDRYRQHWQR--RGVLPMLREIIARRH------VAENLLATAGGERRLTDLL 673 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 L E L L +E L + I++ + ++ + V+++T+H Sbjct: 674 ------HLGELLQEAASQLDSEHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIH 727 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + + N ++ Sbjct: 728 KSKGLEYPLVWLPFIANFRQQQDVLYHDRHSFEAL-------------LDLNADAESQAL 774 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------VYD 687 ++ E RLLYV +TRA I +K + + D Sbjct: 775 AEEERLAEDLRLLYVALTRAVYHCSIGIAPLIKGGRKKQGESDMHLSALGYLVQRGQAGD 834 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747 + + E++ ++ A + P E + Q + Sbjct: 835 AQYLSEKLAELAALQGGEISVSPAGHLDDVPWQPAPETLPELAARQFTRQLQDHWRVTSY 894 Query: 748 --------------------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787 ++ ++ + + S + G +H Sbjct: 895 SGLQQHGSTKGGVVPMLNIALQELLPRLDIDVVGEQALMAESRLTPHSFPRGAAPGTFLH 954 Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAM 841 LL+ + + + + L + +++ P+ + Sbjct: 955 DLLEPLDFSQPIDAGWLAEQL---QQQGFGEQWSVMLYQWLNDIVQTPLNETGVTLAQLT 1011 Query: 842 SCDSYSEVSVSGK--------------------------INCPKKDIIISGRIDQISISQ 875 +E+ ++ + ++ G ID + Q Sbjct: 1012 PHSKLAELQFYLPIDTLLCANELDALIKHYDPLSRQCPALDFQQVRGMLKGFIDLVFCWQ 1071 Query: 876 QNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913 ++ +YK++ + + Q +Y L Sbjct: 1072 GKYYLLDYKSNWLGEDSSAYTYDAMAQAMAEHRYDLQYQLYTLALHR 1118 >gi|327395987|dbj|BAK13409.1| DNA helicase II UvrD [Pantoea ananatis AJ13355] Length = 720 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 99/580 (17%), Positives = 188/580 (32%), Gaps = 116/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ ++L + I + ++IL+DE QDT+ I Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFSNILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + VGD+ QSIY + GA+ + + R + Sbjct: 229 QYAWIRMLAGD----------SGKVIIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL + + + G +LW Sbjct: 273 --GADTIRLEQNYRSTNNILKSANALIANNNGRLGK---------------------ELW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + S F+ L + R + I + Sbjct: 310 -------TDGSDGEPISVYCAFNELDES-------RFVVNRIKAWMENGNAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R + ++ Sbjct: 348 --ADCAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALAYLRLMANR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + + R + T+++ ++ A S Q Sbjct: 402 NDDAAFERVVNTPTRGVGDRTLDVVRQTAREKQITLWQATRELLQSRALAGRAASALQRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 + + L H ++ + G + I+ L+E + T + Sbjct: 462 CELVDSLASETVDMPLHVQTDRVIKDSGLWIMYEQEKGEKGQARIENLEELVTATRQFSY 521 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 Q+ L L + L + + V++MT+H+AKGLE VF+V +F Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 582 SQMALDEGG----------------------------------RLEEERRLAYVGVTRAM 607 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + K + + +++ Sbjct: 608 MKLTLTYAETRRLYGKEVYHRPSRFIGELPEACIEEVRLR 647 >gi|227550044|ref|ZP_03980093.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227077890|gb|EEI15853.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 1096 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 119/926 (12%), Positives = 251/926 (27%), Gaps = 156/926 (16%) Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174 ++ T L ++ ++ F + + L + ++ Sbjct: 220 KEMAGWRDTQQLRRAYLPLVEELNAQLRERGLVTFNEQMSVAARLAHDHE---FVGASQR 276 Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 Q +++DE QDTS Q ++RSL P T+ AVGD Q+IY + GA Sbjct: 277 QRYRVVMLDEYQDTSHAQRVLLRSLFGQGRNADQPRRHPLTVTAVGDPMQAIYGWRGATA 336 Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294 + G +L S+R+ A++L + ++V Sbjct: 337 ANLAAFVEDFP---EPTGAPAPTKQLTTSWRNPAEVLALANRVSDSLLGTGS----DRVV 389 Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354 G V+L + + E Sbjct: 390 AALDPRPGAGAGEVELGFFEHEDEEIDFVADNLAAQYDAARAAGE--------------- 434 Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414 VLVRK K +P + + L D Sbjct: 435 ------------------PFSAAVLVRKNKTSPEVAEALEE----RGVPFEIVGLAGLLD 472 Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY----- 469 + D +A+ ++ D + + +L P D+ + + Sbjct: 473 VPEVADTIAIASMLVRPGDSAAALRILAGPAVGLGLADLDALSRRAANLRGAAPAAPKPD 532 Query: 470 ------------------------------------------IQKFANCGISKFQHVIKY 487 +++ G+ + + V Sbjct: 533 EAADPTTHFEAQLEESVAEAQRITAGADTPAGLTDAVADLGETERYTPDGLRRIKAVASK 592 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + L A D F I+ R + ++R + LD L +SL Sbjct: 593 LRWLRTHALGKRLPDVFADIISVFGIRTEVLARPSSTGTVHLDRLLEEVSSY---PGTSL 649 Query: 548 QELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L+ E + V+I+T H AKGLE V ++ ++ + + Sbjct: 650 TALLDYFELTREHEGGLAPGNVPVRTDRVQILTAHKAKGLEWDTVAVIRADAETYKARTA 709 Query: 604 KKMHIMPSLNDDP-GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + + D+ + ++ EE RL YV +TR++ +L Sbjct: 710 TFLTQPQLVPDEDFDAFADAENRTEFAKAAKAYVAAVRTKLAEESARLFYVAVTRSARKL 769 Query: 663 IICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717 I+ + KK + + D+V ++ + D A T Sbjct: 770 IVTGSAVKPGRKKVAEPYEHFAAIRDLVPETSVVHWYDGSSADVDEQEDDHDNAVPQRTG 829 Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFS-------------------------------- 745 + +E + + + Sbjct: 830 LWPHLQVEPGDAETAELVARARESLPEYIDGELYGLWERDTSALIEEHLAAASGEVPVMM 889 Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 P + ++ L+ + + N RG H+ L+ + ++ Sbjct: 890 PGELTASDVVALSADSEQFARRARRPVPFKPNTYAKRGTAFHEWLEEFYGARPLLTEDE- 948 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865 P + + L+N + + + V + ++ Sbjct: 949 ----------LPGVDEPEVETRTLEKLKNNFERSHWAR--RTPAFVEHPFELALGESVVR 996 Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN-KSLVCLL 924 GR+D + + + ++KT + + QL++Y + + + + + Sbjct: 997 GRMDAVFMDDNGWTVVDWKTGTKPA--PAQMKSA-MLQLAVYREAWRRIAGDGLDVRAVF 1053 Query: 925 IYVSEPKVFIIPQNKLNKAFAEISTK 950 YV + F+ + ++ + Sbjct: 1054 FYVRTGEDFVPSDLPGSDELEQLLRQ 1079 >gi|261822628|ref|YP_003260734.1| exonuclease V subunit beta [Pectobacterium wasabiae WPP163] gi|261606641|gb|ACX89127.1| exodeoxyribonuclease V, beta subunit [Pectobacterium wasabiae WPP163] Length = 1203 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 119/870 (13%), Positives = 280/870 (32%), Gaps = 122/870 (14%) Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + ++ + L + + E K++ L F+DL+ +D L++ Sbjct: 317 VFEATEQLLVAPLSLRDLVIVRALSAIRGSVREEKRQRAELGFDDLLSRLDDALQQP-AG 375 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 + I + +IDE QDT Q+ + R+L L +GD KQ+I Sbjct: 376 ERLADAIRERYPVAMIDEFQDTDPQQYRIFRTLY--------VGQPQCGLLLIGDPKQAI 427 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y+F GA+ + + G+ + L ++RS+ ++ V+++F E+ Sbjct: 428 YAFRGADIFTYMHAR----------GEVAAHYTLGTNWRSSHQMVGGVNRLFERLEHPFI 477 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 + + +V Q P + W + + + +A Sbjct: 478 FHNIPFLPVS----------PAESKRSLVFDVAGQPQPALQFWLTGAEPIGVGDYQQQMA 527 Query: 347 RRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 R+ A I + + + +R+++A D+ VLVR R++ LI L Sbjct: 528 RQCAAQIRDWLAASQRNEAWLITDDSQRLVKASDMSVLVRSRREASLIRDALSRLSIP-- 585 Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461 SV ++R + D++ + + +L+ E + + + + L + + Sbjct: 586 -SVYLSNRDSVFSTPEASDILWVLQAVLAPEQERTLRSAMATALMGLDAAQVDAL----G 640 Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521 ++E+ ++ + + ++ + + L + S H +L + +G ++ Sbjct: 641 QSESAWDALVDEF----AGYRALWRQRGVLPMLRALMSQHQLSENLLASTEGERRITDIL 696 Query: 522 GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578 + E L L +E L + I + + + ++ + V+I+T+H Sbjct: 697 ------HIGELLQDASATLDSEHALVRWLSQQIVQPNPQAESQQLRLESDRHLVQIVTIH 750 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +KGLE P+V+L + + I D + Sbjct: 751 KSKGLEYPLVWLPFISNFRVQDQGIYHDRDSYQAVLDLQNN-------------EESQAL 797 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 ++ E RLLYV +TR+ + S +K + + + + Sbjct: 798 AEEERLAEDLRLLYVALTRSIYHCSVGVAPVQRSRKKDGSSDMHHSALGYLLQRGQEADV 857 Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP----------- 746 L + + + P + ++ + + ++ Sbjct: 858 ATLVSELEGMVGDGVALTRLQTTEAPRWQPDSPELTALRARHIERPLRDNWRVTSYSGLQ 917 Query: 747 ---IKNDINEPYILNPSTIDTKGKTNL--ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801 N + L+ I + + + + + + G +H L + + Sbjct: 918 QHGSTNTQDLVPRLDIEAIGERQEVGETQLTPHTFPRGASPGTFLHSLFETLDFTQPVDD 977 Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCP 858 + + K + ++ + ++ + D +E+ I P Sbjct: 978 DWLAEQLQLQGFEAHWHPVLKVWMDTLLTTPLDEQGITLSALENQDKQAELQFYIPIEAP 1037 Query: 859 KK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892 + ++ G ID + + ++ +YK++ P Sbjct: 1038 MQAAQLDRLAKCYDPLSAQCPVLSFQQVKGMLKGFIDLVFRWEGRYYLLDYKSNWLGPDA 1097 Query: 893 IEHI---------PYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1098 SAYTHTAMAQSMAEHRYDLQYQLYTLALHR 1127 >gi|314978138|gb|EFT22232.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2] gi|315088601|gb|EFT60577.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1] Length = 1072 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 148/995 (14%), Positives = 296/995 (29%), Gaps = 122/995 (12%) Query: 20 LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79 W I + + L KA I + L+ + + Sbjct: 122 AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181 Query: 80 PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139 P K + + + L K+ D + I + + L + A Y+ Sbjct: 182 PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233 Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199 KK+ +++F D ++ L+ + ++ +L+DE QDTS Q +V+ +L Sbjct: 234 LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290 Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259 F + H + AVGD Q+IY + GA +L R + G ++ Sbjct: 291 ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344 Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319 L + R I+ + ++ +R S + G + Sbjct: 345 LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390 Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379 Q E ++ + A + TI + D +L Sbjct: 391 GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442 Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439 VR+ D + + V + L I ++A R ++ ++DD + Sbjct: 443 VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498 Query: 440 MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483 +L +P S DD+ + + + + + + G + Q Sbjct: 499 LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558 Query: 484 VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 +K + I + SP D I + + LD N Sbjct: 559 ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRGHLDALWNAIR 618 Query: 538 RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 ++ ++ +++ L + RA + + + V + TVH AKGLE P+V + D Sbjct: 619 EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678 Query: 594 GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 VF ++PS I P S S + + + + S E Sbjct: 679 AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737 Query: 649 RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 RL YV +TRA ++L++ H + + D++ D + + I Sbjct: 738 RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797 Query: 708 -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748 + + + + +K + ++ P + Sbjct: 798 TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857 Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801 ++ L+ + + ++ G H+ + I + Sbjct: 858 LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917 Query: 802 KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860 T+ A + L S+ + E A + ++V Sbjct: 918 AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971 Query: 861 DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917 ++ GR+D + + + ++KT + QLSIY + Sbjct: 972 QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023 Query: 918 KSLV--CLLIYVSEPKVFIIPQNKLNKAFAEISTK 950 + +V + A I T Sbjct: 1024 DPSRVWAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|324119859|gb|EGC13738.1| exodeoxyribonuclease V [Escherichia coli E1167] Length = 1180 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ + F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGEVGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGEMQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|330807373|ref|YP_004351835.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375481|gb|AEA66831.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1229 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 134/1049 (12%), Positives = 292/1049 (27%), Gaps = 147/1049 (14%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSME---TGNPTILKKAQTLQQASQTQCI 62 GL E ++ + ++ ++ G + + +Q A + Sbjct: 212 GLEPAELIAAALQERSAALLDLKAPWRQWAVELLQICQQGVASKSVDGRKMQ-ARYFEPW 270 Query: 63 EERFSLL---SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119 ++ + S L T + + + + + + + Sbjct: 271 FQKITAWVDDESLELLDIGTGFSRLTPEGMAEAWKG--DVPNHPGLDAMASLKASLDALP 328 Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179 A+++ A +E K++ + F+D+++ + L+ D + I ++ Sbjct: 329 TPDAAVLQHAAQWVGARFEAEKRRRAEMGFDDMLLRLDAALQA-DGGERLASLIREQFPV 387 Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 LIDE QDT +Q+ + S+ + LF +GD KQ+IY+F GA+ LR Sbjct: 388 ALIDEFQDTDPVQYRIFESIYR-----IEDNDPGTGLFLIGDPKQAIYAFRGADIYTYLR 442 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + + L +FRS+ ++ V+ VF E+ Sbjct: 443 AREA---------TAGRLHTLGTNFRSSHAMVGAVNHVFQNAESRPKGRGAFLFREPSGE 493 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIG 358 + + + + + Q W + L +A A I+ ++ Sbjct: 494 NPVPFLSVESQGRKESLRVAGQVVAALNIWHLSSEQPLSGAVYRQSMAAACASEITALLN 553 Query: 359 TDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 +G R ++ DI +LVR K+ + SV +D+ + Sbjct: 554 GGQSGRDGFTVDGKVLRGVRPADIAILVRDGKEAQAVRDALSA---RGVRSVYLSDKDSV 610 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 +DL+ + + + L S N S ++ ++ E + Sbjct: 611 FASQEARDLLVWLKACAEPDAERPLRAALASITLNLSLTELERLNQD--------ELAWE 662 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532 ++ V + L + + + ++ G + + L E Sbjct: 663 ARVMQFRGYRTVWRSQGVLPMLRRLLHDFELPQALMVRSDGERVLTNLL------HLCEL 716 Query: 533 LNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 L + ++ L L ++ V+++T+H +KGLE P+VF Sbjct: 717 LQQAAGELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVF 776 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L S +H N ++LI E R Sbjct: 777 LPFICSTKPVDGSRLPLHYHDEANKAQISL----------KPTAELIAKADDERLAEDLR 826 Query: 650 LLYVGMTRASDQLIICKHSNTSNE----------------KKSNQRTWYDMVYDSFHNDE 693 LLYV +TRA + + ++ + Sbjct: 827 LLYVALTRAQHACWLGVADLKRGSNNRSILHVSALGYLLGGGAPLTESVELRRWLEDLQQ 886 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 + + PL + S ++ ++ Sbjct: 887 GSDAVSYQPMPEATDEHYRPPRNEAVLLEPLVPLRKASENWWIASYSALRISESLSEGSD 946 Query: 754 PYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQVIF----TLP 797 +P L+ + N G +H LL+ + Sbjct: 947 TAPESPQAQKLFDDERLDPDAPRETIAIGGDIHRFPRGPNPGTFLHGLLEWAAGEGFSSA 1006 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-------PMMTTAMSCDSYSEVS 850 ++ I C + + L + ++ + ++ E Sbjct: 1007 PADIEDAIARRCNRRGWKGWITTLSDWLQHLIKMPMHVGNDQAPVVLEDLSQFQVEMEFW 1066 Query: 851 VS-------------------GKINCPKKDIIIS----GRIDQISISQQNIFIFEYKTH- 886 + G + ++++ G ID ++ +YK++ Sbjct: 1067 FASHKVDVQKLDQLVCRFSHGGVARVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNW 1126 Query: 887 --------HHVPQEIEHIPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI-YVSE 929 E + + + Q +Y L ++ + L ++ Sbjct: 1127 LGVDDMAYTVPAMEQSILDHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRG 1186 Query: 930 ------PKVFIIPQNKLNKAFAEISTKIP 952 F P L + + P Sbjct: 1187 TRSASQGVYFAKPPRALIEQLDRLFQGAP 1215 >gi|302338886|ref|YP_003804092.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301636071|gb|ADK81498.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 670 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 100/597 (16%), Positives = 188/597 (31%), Gaps = 119/597 (19%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 L K L Y +DF+DLI+ L ++ + + +I++DE QD Sbjct: 159 KLYKPLFEEYLANLHAYNAVDFDDLIMLPIRLFEEFPE---VLDAYRRRYRYIMVDEFQD 215 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 TSL Q+ +++ L + R + VGD+ QSIYS+ GA + ++ ++ + Sbjct: 216 TSLAQYHLMKLLAK----------KERNICVVGDDDQSIYSWRGANYQNIVNFEKDFPEL 265 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I+L ++RST +IL ++V + +N + Sbjct: 266 LE--------IKLEQNYRSTGNILAAANQVIANNKNRKSK-------------------- 297 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 +LW + E + D A IA I+ + Sbjct: 298 -ELWTGL------DNGRSIEIFYPDDDLKE--------AEFIAQLIATL---------SM 333 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + + D VLVR I I + IKD++A R Sbjct: 334 REGYKYHDFGVLVRTNSLAATIENAFLAE----NIPYKVSGGQSFFQRKEIKDIIAYLRV 389 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---------VYEYIQKFANCGI 478 + + +DD++F+ ++ +P + K+ E E Y ++ Sbjct: 390 LSNPDDDVNFLRIINTPRRGIGRVSLEKLRELADEKEWSLYSAASAIRYAEDAPVSDKVK 449 Query: 479 SKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNEVID------VLDE 531 + + +I D ++ I + Sbjct: 450 AALGEFVTFIEYYREQILTGKKMADTTRSLVDKVDYWGYLIMENQKNERAARWKYKNIGI 509 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFL 590 FL+ R E++ + + + L + + N++ V +MTVH +KGLE +VFL Sbjct: 510 FLDLFERWEKDPDNDDPNIYNYLNRITLITRDDDQEENNDMVNLMTVHASKGLEFEIVFL 569 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + H EE RL Sbjct: 570 AGVEDTIMPHARSL---------------------------------EEDPDNIEEERRL 596 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707 YV +TRA +L + ++ + + + + + + + Sbjct: 597 FYVAITRAKQKLYLTSCKTRRVSREVIDSSPSRFLEEIPDHLIEYHQPEEEVESGEA 653 >gi|308183581|ref|YP_003927708.1| DNA helicase II [Helicobacter pylori PeCan4] gi|308065766|gb|ADO07658.1| DNA helicase II [Helicobacter pylori PeCan4] Length = 681 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 96/572 (16%), Positives = 187/572 (32%), Gaps = 118/572 (20%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y+ A KK+ ++DF+DL+ + +L+ + I + + ++I++DE QDT+ +Q Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E ++ L+ + L VGD+ QSIY F GA+ +L + + Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 +++L ++RS+A+IL + + S ++ + +S + V Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + +AY I ++ N Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 I +L R + I L I + +KD +A + ++D Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486 +L P + I + E + E ++ K + + Sbjct: 388 RFFIKRVLNKPSRGLGKITQEWIFSLLDDEGLNLEEALKLGVFKGKLNPKNEHALKKFMA 447 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545 I L A S +F L + + E + E L+ + + + + Sbjct: 448 MIGRLRE-AFEISVEEFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L+ L + + + N +V M+VH +KGLE VF++ F H Sbjct: 507 --HSLLDFLNESVLDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++S EE RL YV +TRA ++L + Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 S + + + ++ + Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLQQEKPP 619 >gi|330469984|ref|YP_004407727.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] gi|328812955|gb|AEB47127.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] Length = 1114 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 145/959 (15%), Positives = 247/959 (25%), Gaps = 168/959 (17%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159 Q +I + T L L Y K +DF D + + Sbjct: 216 FADVQSRPGRIYADVRKALALQQTRLKL---LPLVRAYARRKDDFEAMDFADQLARAARV 272 Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 + I +L+DE QDTS Q ++R+L D + AV Sbjct: 273 ARDHPGVGEI---ERDRYRVVLLDEYQDTSHAQVVLLRALFGD----------GHPVTAV 319 Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 GD QSIY + GA + R + G ++ L S+R+ +IL V + + + Sbjct: 320 GDPCQSIYGWRGASAGTLDRFPTEF---VGSDGSPARVLGLTTSWRNRPEILAVANALAT 376 Query: 280 IPENAQGLSEDS------TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333 A + I HRS R GTV ++ Sbjct: 377 PLRAAGARVPELHAALSVDEPIAHRSPRGAAAGTVHCALLSTYADEADWIADSL------ 430 Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393 L A+ + R + I V VLVR R P I Sbjct: 431 --LAAWQGAARMPRALPEQI---------------PVTARPTTAVLVRLRSQIPAIAAAL 473 Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453 R + V L D ++D++ R + D + + +L + D+ Sbjct: 474 RE----RGLPVEVVGLGGLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDL 529 Query: 454 FKICT----------------------QRHETETVYEY------IQKFANCGISKFQHVI 485 + R + T+ E Q ++ G ++ + Sbjct: 530 VALHRRAKAIAAARRQLADDGDPEIVPDRLDEATLVEALADLGPAQAYSAEGYARLRAYA 589 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-------IDVLDEFLNFTLR 538 + + L + S + I + R G E LD + R Sbjct: 590 RELGLLRYRLDQ-SLPELIADIERTTGLDVEVAVRAGGEGAGDAGLARAHLDALGDVAAR 648 Query: 539 NE-QNSYSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + ++L ++ L V+I+T H AKGLE VV + Sbjct: 649 FSGETPGATLAGFLAYLAAAEDEERGLAPGEVEVVEGAVQILTAHAAKGLEWDVVAVAGL 708 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL------------KK 641 V+ H + L P + + + Sbjct: 709 SRGVWPGPVRNSDHWLGGLGVLPFPLRGDADGLPELALAEAADQRAVARTMAEFTDAWRA 768 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------WYDMVYD 687 + E RL YV +TR L+ H K+ + +V + Sbjct: 769 HDEREERRLAYVAVTRPRRLLLCSGHWWGEGTKRPRGPSALLREIHDACLDGGPGHLVDE 828 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER--------EETIKQLMDEQKI 739 T + + EW A P E Sbjct: 829 WTPEPTPDAVNPTTEVVLRAEWPADPLGVRRPALAEAAALVRRFLTGEGGPDNSAASDPQ 888 Query: 740 PKKLFSPIKNDINEPYILN-----------------------PSTIDTKGKTNLESLLSD 776 + + E L+ Sbjct: 889 VARWRREADLLLAERAELSRLSGPIDVVLPEQLSVTQLVSLRRDPAALARTLRRPLPAEP 948 Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836 N RG H L+ F + L A + L+ Sbjct: 949 NPYARRGTAFHAWLEQRFG---------ADRLLDTDE-LPGAADEDAAPDEALAELQRRF 998 Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEH 895 + + + + + V +++ GR+D + + ++KT Sbjct: 999 LASEWAD--RTPIEVEVPFATVIGGVVVRGRMDAVFRRPGDRFDVVDWKTGARPTGASAE 1056 Query: 896 IPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 + QL++Y + P + YV E + T IP Sbjct: 1057 VA---AVQLAVYRLAWAELAGVPVDRVGAAFHYVREGVTVRPADLLDLDGLTTLITSIP 1112 >gi|200389247|ref|ZP_03215859.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199606345|gb|EDZ04890.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1181 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHNLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|281358424|ref|ZP_06244905.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548] gi|281315047|gb|EFA99079.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548] Length = 679 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 102/602 (16%), Positives = 195/602 (32%), Gaps = 119/602 (19%) Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 A L Y+ + LDF+D+++ L + + + + ++LIDE QDT+ Sbjct: 171 AAQLYEEYQTLLEMQNSLDFDDMLLLVYRLFTEHPD---VLERYRETYQYLLIDEYQDTN 227 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ +++ LT D L VGD+ QSIYS+ GA+ +L Sbjct: 228 AAQFTIVKLLTGD----------RCNLCVVGDDDQSIYSWRGADISNILGFPDHFP---- 273 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 +++L ++RST IL + V N Q Sbjct: 274 ----GAKVVKLEQNYRSTTSILNAANVVIGSNANRHEK---------------------Q 308 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369 LW + + + + + + A I I+ M Sbjct: 309 LWSNL-------GDGEPVKIVTTENGESE-------AEFIGSMITQMKNDKP-------- 346 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 ++ +D +L R + + R +I IKD +A + ++ Sbjct: 347 ELRYQDFAILYRSNHLSRQLEQTLR----RQQIPYRLVGGQEFFKRREIKDAVAYLKLLV 402 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQ 482 + DD S + +L +P ++ + + T R E E+ ++ + + Sbjct: 403 NPCDDQSLLRILGTPPRGLAQKAVDSLKTGRRAKHKPMFELLAEEEFQKELTPKAAAAAR 462 Query: 483 HVIKYIHELIHI-----AQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536 + + A +F I ++ + + +DEF+ Sbjct: 463 EFAEVYAKYKERFAEPGALAWKITEFLKEIGYLDGLQRIYKDLKDAMKRRENVDEFITAI 522 Query: 537 LRNE--QNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDT 593 + E Q +L+ + L + K + V +MTVH +KGLE PVVF+V Sbjct: 523 TQYEERQAEPPTLEAYLENLALLEESDKVEEETGTVDAVTLMTVHASKGLEFPVVFVVAM 582 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F H+ L++ + EE RL YV Sbjct: 583 ERNIFPHER-----------------------------------ALEEGSVEEELRLFYV 607 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 +TRA L + + + ++ + ++ + Sbjct: 608 AITRARKYLYLLRAKERMQRGITRATLPSPFLHLLTDEVAERTTPEELLRPASEDEVRQA 667 Query: 714 WS 715 ++ Sbjct: 668 FA 669 >gi|320539715|ref|ZP_08039379.1| exonuclease V (RecBCD complex), beta subunit [Serratia symbiotica str. Tucson] gi|320030327|gb|EFW12342.1| exonuclease V (RecBCD complex), beta subunit [Serratia symbiotica str. Tucson] Length = 1181 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 133/967 (13%), Positives = 298/967 (30%), Gaps = 138/967 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 E I + + +L ++G ++ L L Sbjct: 224 EQIVARIDAIKAHWQKVAGDLETLIRQSGADKRSYSSKHLPNWLGKVGEWAMKETLDYQL 283 Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 + +++++ ++ + + + D + L + Sbjct: 284 PKELDKFRQSVLLEKTKQG--------EAPRHALFTAIDELFAAPLTLRDLIIARALSEI 335 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 ++ K++ L F+DL+ + L+ + I Q +IDE QDT Q+ Sbjct: 336 RRSIQQEKRQRAELGFDDLLSRMDSALQ-NVGGEQLAQAIRQRYPVAMIDEFQDTDPQQY 394 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 + + L L +GD KQ+IY+F GA+ +R + T Sbjct: 395 RIFQKLY--------VGQQDCGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 442 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 L ++RS+ ++ V+ +F E + + + + Sbjct: 443 ------LETNWRSSPAMVASVNTLFCQLEKPFLFGQIPFIEVS----------AAEKNQG 486 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368 +V + +Q P + W + + ++AR A I + + + + + Sbjct: 487 LVFELYNQSQPAMQFWLQQGEGVGVSDYQQLMARLCATQIRDWLSAGQQGQAWLDNGKCR 546 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R +QA +I VLVR R + L+ L SV ++R + D KDL+ L + + Sbjct: 547 RPVQASNITVLVRSRNEAALVRDALSALSIP---SVYLSNRDSIFDTPEAKDLLWLLQAV 603 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 L E + + + L + + E K++ + ++ Sbjct: 604 LVPEQGRTLRSAMATGLMGLDAPMLA--------GLSSDELAWDALVDEFDKYRTLWRHR 655 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545 L +++ +L + G ++ L E L L +E Sbjct: 656 GVLPMLSEVMKTRYLAENLLASPGGERRLTDVL------HLGELLQEAAAQLDSEHALVR 709 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L + I++ + + ++ + V+++T+H +KGLE +V+L G+ Sbjct: 710 WLAQQIAQPNRQSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQALYHD 769 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662 H +L D + D + ++ E RLLYV +TR+ Sbjct: 770 RHSFQALLDLN--------------VNEDSLAWAEEERLAEDLRLLYVALTRSVYHSSIG 815 Query: 663 ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI-------AY 712 +I ++ +V D L + Sbjct: 816 IAPLIQGARKKQGGTDVHRSALGYLVQAGQAGDAAYLHECLQQLAGSGVVLSRVETLNEQ 875 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIP-----KKLFSPIKNDINEPYILNPSTIDTKGK 767 W +T L ++ +Q+ D ++ ++ + D+ ++ + + Sbjct: 876 PWQPQAAISTKLAAKDFTRQIQDFWRVTSYTGLRQHGGNLMQDLLPQLDIDAAGEQAEKG 935 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 + + + + G +H + + + + + + LL Sbjct: 936 EPVLTPHTFPRGAAPGTFLHSVFETLDFTQP---LDEQWLLKQLQQQGFADHWQPILLAW 992 Query: 828 ITRLLENPM------MTTAMSCDSYSEVSVSGK--------------------------I 855 + LL P+ + +E+ + Sbjct: 993 VQVLLTTPLNDSGVTLAALAPQHKQAELQFYLPINRVLQAHELDELVKRHDPLSARCPVL 1052 Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSI 906 + + ++ G ID + Q ++ +YK++ + + + Q + Sbjct: 1053 DFQQVQGMLKGFIDLVFCWQDKYYLLDYKSNWLGEDSSAYTRPAMERAMAEHRYDLQYQL 1112 Query: 907 YEKILKD 913 Y L Sbjct: 1113 YTLALHR 1119 >gi|261855720|ref|YP_003263003.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2] gi|261836189|gb|ACX95956.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2] Length = 728 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 105/632 (16%), Positives = 196/632 (31%), Gaps = 130/632 (20%) Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 + S + YE+ ++ ++DF +L++ +LL+ D +R Sbjct: 161 LRARHLATSGDHLNDAIMPVYQAYEDICQRGGLVDFTELLLRATELLRDHDT---LRQHY 217 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 + +LIDE QDT+ +Q+ R L + +FAVGD+ QSIY + GA+ Sbjct: 218 QRRFRQVLIDEFQDTNSLQYAWARLLVGED----------NGIFAVGDDDQSIYGWRGAK 267 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 + + R ++ L ++RST IL + + + + G + Sbjct: 268 IEHIHDFARDFSN--------THLVRLEQNYRSTGHILDAANAIITRNQGRLGKT----- 314 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 LW Q + F+ + A + I Sbjct: 315 ----------------LW-------TEGERGQPIRYYLAFNEQDE-------AYFVTQQI 344 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + + + +L R + I + Sbjct: 345 EQAVRDG----------LPRSECAILYRANAQSRAIEEAL----IRAGLPYRVYGGLRFF 390 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ- 471 D I+D +A R + +++DD +F ++ +P + + + R ++++ Sbjct: 391 DRAEIRDALAYLRLVANRDDDAAFERVINNPARGLGDKSLQALRDQARTAATSLWQASIN 450 Query: 472 -----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526 F + I I L + + D + + R+Q E Sbjct: 451 LLASGAFPPRASGGLRQFIDLIDSLAVDSATQTLSDRVAICIDRSGLREQHKKDRDQERA 510 Query: 527 ----DVLDEFLNFTLR--NEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579 + LDE +N + + + EL + L Q A + V++MT+H Sbjct: 511 QSKLENLDELVNAARGFVFDPDESPGMSELDAFLSQTSLDAGDAQGEAWEDCVQLMTLHA 570 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE +VFLV +F H+ Sbjct: 571 AKGLEFEMVFLVGMEEGLFPHQMSIDEPG------------------------------- 599 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 EE RL YVG+TRA L + + + + + Sbjct: 600 ---RLEEERRLCYVGITRAQKVLTLTSTESRRLHGRQMFPMPSRFLG------------E 644 Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIK 731 L + + + + P + E T Sbjct: 645 LPGKLIDEIRPRAQQAFRAQSGLPGKPESTEA 676 >gi|307292736|ref|ZP_07572582.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1] gi|306880802|gb|EFN12018.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1] Length = 770 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 103/551 (18%), Positives = 173/551 (31%), Gaps = 120/551 (21%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L A Y+ + DF DL+++ +LK+ + Q +I++DE QDT+ Sbjct: 193 QKLYAAYQARLRDVNACDFGDLLLHVLVILKRH---RDVLESYQQRFRYIMVDEYQDTNS 249 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + + + VGD+ QSIYS+ GAE +LR ++ Sbjct: 250 SQYLWLRLLAQ----------TRKNICCVGDDDQSIYSWRGAEVANILRFEKDFP----- 294 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I+ L ++RST IL V + N G + L Sbjct: 295 ---GAKIVRLEQNYRSTPHILGAASGVIAENGNRLGKT---------------------L 330 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + W + ARR+ I ++ Sbjct: 331 WTDIDVGEKVR---VIGVWDGPEE-----------ARRVGDEIESIERNGGSLD------ 370 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ +LVR + T + F + I+D +A R + Sbjct: 371 ----EVAILVRAQHQTREFEDRF----IQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQ 422 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ P + + K+ R E + + Sbjct: 423 PADDLAFERIVNVPKRGLGDKAVEKLHRLARAEGIPLALAAARILDTDEMTPQARRSLGA 482 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I + A + IL + E ++ L+E E Sbjct: 483 FIGDLARWRDRAAQLPHAELARQILDESGYTAMLQAERTTESAGRLENLNELTRAMEEYE 542 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + LE + A+ ++ IMT+H AKGLE VFL +F Sbjct: 543 T--------LGAFLEHVSLVMDNEAQADERKITIMTIHAAKGLEFDTVFLAGWEEGIFPS 594 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + S EE RL YV +TRA Sbjct: 595 QRALDEGGLNS--------------------------------LEEERRLAYVAITRARK 622 Query: 661 QLIICKHSNTS 671 +I +N Sbjct: 623 LCLILHAANRR 633 >gi|294785780|ref|ZP_06751068.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27] gi|294487494|gb|EFG34856.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27] Length = 737 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 105/546 (19%), Positives = 180/546 (32%), Gaps = 117/546 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y ++ +DF D+++NT LL+K + I K+ + +I+IDE QDT+ + Sbjct: 169 EVYDKYNRVLLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 224 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I + L VGDE QSIY F GA +L + Sbjct: 225 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFETNYNN----- 269 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++RST IL +++ ++++ LW Sbjct: 270 ---AKIIKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 305 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ + S RI I I Sbjct: 306 -------TQNGKGDLIKVLACDNARDEVS-------RIIEIIKENHQNG----------I 341 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +D+ +L R + + Y I IKD++A I++ Sbjct: 342 AYRDMTILYRTNAQSRVFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 397 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484 +D+L+ ++ P E + KI R + E + K + Sbjct: 398 QDELNLQRIINVPKRKVGEKGVEKIIAYARENNLNLLEALSHIKEISGLTAVGKEKLLEM 457 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542 I EL ++ ++ K + I+ +DEF N L E Sbjct: 458 YDIIKELKDLSYTEIASYIVQTLIDKIKYIDYIKENYDDAEARIENIDEFKNSILELE-- 515 Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + L LE + + V++MT+H +KGLE P+VFLV +++F Sbjct: 516 NIVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGS 575 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA + Sbjct: 576 ----------------------------------RAMFDEKEMEEERRLCYVALTRAEKK 601 Query: 662 LIICKH 667 L + Sbjct: 602 LYLSHA 607 >gi|332109888|gb|EGJ10516.1| ATP-dependent DNA helicase UvrD [Rubrivivax benzoatilyticus JA2] Length = 784 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 105/650 (16%), Positives = 209/650 (32%), Gaps = 144/650 (22%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L S + + + P +Q E + Sbjct: 100 LRAHWKAAGLPQSFQILDSGDQLSAVKRVVKAMNLDEERFVPKQVAWFIAAQKE-----E 154 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + + L + + YEE ++ V+DF +L++ + +LL+ + +R Sbjct: 155 GRRPAAVEAFDEHTRKLVQ-VYEAYEEQCRREGVVDFAELMLRSYELLRDDE---PLREH 210 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + H+L+DE QDT+ +Q+ ++ G+ +FAVGD+ QSIY+F GA Sbjct: 211 YRRRFGHVLVDEFQDTNRLQYAWLKMFAPPGAQGQG-------VFAVGDDDQSIYAFRGA 263 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + +R + R S+I+L ++RS +IL + + + G + + Sbjct: 264 RVGNMADFEREYRVR--------SVIKLEQNYRSFGNILDAANALIAHNAQRLGKNLRTD 315 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G+ VQ + +S A+ + Sbjct: 316 AG-------PGEPIRVQ----------------------------EAASDYAEAQWLLDE 340 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + + +I VL R + +I + I Sbjct: 341 ARELHRGG----------MPRSEIAVLYRSNAQSRVIESAL----FNAGIPYRVYGGLRF 386 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471 + +K +A R + + +DD SF+ ++ P I ++ R ++ + + Sbjct: 387 FERAEVKHALAYLRLLENPDDDTSFLRVVNFPARGIGARSIEQLQDAARASGRSLAQSVG 446 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530 Q + + + Q + + ++ + + G + I+ L Sbjct: 447 AVPGKAGLNLQGFVHKLDTMRSATQGLTLREIIEHVVHESGLLDFYRTEKEGQDRIENLQ 506 Query: 531 EFLNFTLRN---------------EQNSYSSLQE-------------------LISELEQ 556 E +N +++ +L L + L Sbjct: 507 ELVNAAESFVTQEGFGKDAVALPLDEHGPGTLAGGGETAIPSPDAETGEIVSPLAAFLTH 566 Query: 557 YPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 A + V++MTVH+AKGLE VF+ +F H+ Sbjct: 567 ASLEAGDNQAQAGTDAVQLMTVHSAKGLEFDAVFITGIEEGLFPHEQSLS---------- 616 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL+YV +TRA +L + Sbjct: 617 ------------------------DADGVEEERRLMYVAITRARKRLYLS 642 >gi|22127040|ref|NP_670463.1| exonuclease V subunit beta [Yersinia pestis KIM 10] gi|45442649|ref|NP_994188.1| exonuclease V subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|21960090|gb|AAM86714.1|AE013917_2 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia pestis KIM 10] gi|45437515|gb|AAS63065.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia pestis biovar Microtus str. 91001] Length = 1241 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 128/989 (12%), Positives = 295/989 (29%), Gaps = 164/989 (16%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 + + L + +L +G ++ L + + Sbjct: 247 VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 306 Query: 76 QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132 + +++++ T++ L + ++ + +RD + + + Sbjct: 307 ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 360 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 ++ K++ L F+DL+ + L++ + I +IDE QDT Q Sbjct: 361 -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 414 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + + ++ L +GD KQ+IY+F GA+ +R + T Sbjct: 415 YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 463 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 L ++RS+ ++ V+++FS+ + I +++ + ++ Sbjct: 464 -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 512 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367 + P W D + ++AR+ A I + + + + Sbjct: 513 ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 566 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +QA DI +LVR R + LI L SV ++R + + KDL+ L + Sbjct: 567 PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWLLQA 623 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 +L+ E + + + + + + + + + + + + V+ Sbjct: 624 VLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPM 681 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + E++ +L G ++ L E L + ++ + Sbjct: 682 LREMMARRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALI 729 Query: 548 QELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 + L ++ Q + + ++ + VR++T+H +KGLE P+V+L G+ + Sbjct: 730 RWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLY 789 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662 N + ++ E RLLYV +TR+ Sbjct: 790 HDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSV 836 Query: 663 ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYE 713 +I E ++ +V D V KLT Sbjct: 837 GIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEP 896 Query: 714 WSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID-------- 763 + P E + Q + L S Sbjct: 897 PDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGA 956 Query: 764 ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 + + + + + G +H LL+ + + Sbjct: 957 PLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLS 1016 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859 + + + L + +++ P+ + +E+ I+ Sbjct: 1017 ERL---QQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLL 1073 Query: 860 K--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 + ++ G ID + Q ++ +YK++ Sbjct: 1074 RAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSR 1133 Query: 894 EHIPY---------THIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1134 AYTVEAMTQAMAEHRYDLQYQLYTLALHR 1162 >gi|307625588|gb|ADN69892.1| exonuclease V subunit beta [Escherichia coli UM146] Length = 1180 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTAQI 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWELV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|298293080|ref|YP_003695019.1| UvrD/REP helicase [Starkeya novella DSM 506] gi|296929591|gb|ADH90400.1| UvrD/REP helicase [Starkeya novella DSM 506] Length = 833 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 111/651 (17%), Positives = 202/651 (31%), Gaps = 114/651 (17%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ K +DF DL++ LL++ + + +IL+DE QDT++ Sbjct: 235 QKLYTDYQARLKALNAVDFGDLLLEGIRLLRENPD---VLADYHRRFRYILVDEYQDTNV 291 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + R + VGD+ QSIY + GAE +LR + Sbjct: 292 AQYLWLRLLAQ----------GSRNVCCVGDDDQSIYGWRGAEVDNILRFESDFP----- 336 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++ L ++RST IL + + E G + S Sbjct: 337 ---GAKVVRLERNYRSTGHILGAAAHLIAHNEGRLGKTLFS------------------- 374 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 N ++ + T +DS + AR I I + + Sbjct: 375 ---------EGENGEKVTVTGAWDSQEE-------ARAIGEEIEALQREGHALTQ----- 413 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +LVR L ++ + I+D +A R I S Sbjct: 414 -----VAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERAEIRDALAYLRVIAS 464 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQH 483 DDL+F ++ P + + +I R + E ++ K + Sbjct: 465 PADDLAFERIVNVPKRGLGDAALRQIHDHARAAQLPLIEAARELVGSEELKPKVRLTLRD 524 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 ++ H+ ++L + + + L+ E Sbjct: 525 LVASFDRWREQMATLPHHELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSME--- 581 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + LI LE + + V IMT+H+AKGLE VFL VF ++ Sbjct: 582 --PFENLIGFLEHISLVMDVDSGNGGDAVNIMTLHSAKGLEFDTVFLPGWEEGVFPNQR- 638 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + ++ EE RL YVG+TRA + Sbjct: 639 -------------------------------ALDEQGRAGLEEERRLAYVGITRARRRAK 667 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 + SN + + D V + + + + Y + + Sbjct: 668 VFFASNRRIHGLWQSAVPSRFLDELSEKDVEVTESRGGSGWGGGQGGGYAGRYGYGPSRF 727 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774 + E + + + +E ++ +G +E L Sbjct: 728 DQAETFGSSYSTPGWQRAQNAAKSGSGFSEGRSRYAASESARGGRIIEGEL 778 >gi|261344760|ref|ZP_05972404.1| hypothetical protein PROVRUST_06024 [Providencia rustigianii DSM 4541] gi|282567204|gb|EFB72739.1| exodeoxyribonuclease V, beta subunit [Providencia rustigianii DSM 4541] Length = 1201 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 133/981 (13%), Positives = 305/981 (31%), Gaps = 153/981 (15%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFFL 74 K+ W + + + + + L A+ A Q + + F Sbjct: 241 VKEAWKAHHGDFEKLITDSDVDKRSYSSRFLPSWLAKITDWAHQETEDYQLPQEILERFT 300 Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134 + + ++ + + ++ ++ + + + +RD + + + Sbjct: 301 QSRLDEK----SKSGSGPAHEVFRQIDELLAQTLTLRDLIIPQAISE-----------VR 345 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 K+ L F+DL+ + L++ D + I + +IDE QDT Q+ Sbjct: 346 QTIAREKQSRGELGFDDLLTRLDKALQQ-DGGTLLAEAIAKRFPVAMIDEFQDTDPQQYR 404 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 + + + + ++ L +GD KQ+IY+F GA+ + K+ T Sbjct: 405 IFQRIYQ--------NTGDSALLFIGDPKQAIYAFRGADIFTYIAAKKQVSAHYT----- 451 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314 L ++RS+ +++ V+++FS N + + + I + Sbjct: 452 -----LETNYRSSQNMVEAVNRIFSHCNNPFIFEQIPFQKVNYAPHNINK---------- 496 Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKR 369 H W +++ ++++ A I+ + + K+ Sbjct: 497 TLFHQGSEVKALTFWLQNSEAVSVAEYEQAISQQCAAQIAQYLSGGLQGTTYFVNQQKQT 556 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 ++A DI VLVR R++ LI L SV ++R + K+L+ L + +L Sbjct: 557 PVEASDITVLVRSRREAILIRDALNQLNIP---SVFQSNRESVFATQEAKELLWLLQAVL 613 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 + E + L + LF + DI + E V + ++A + Sbjct: 614 TPEKERVLRSALATGLFGLTAQDIDNLNYDEKVWENVVDEFARYAVIWHKR--------G 665 Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSS 546 L + S +L G ++ + + E L L E Sbjct: 666 VLPMLRVVMSQRHIAETLLSGVDGERRLMDIM------HIGELLQAMSLQLEGEHTLTRW 719 Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 L + I+ + + ++ + V+I T+H +KGLE +V+L + + + + Sbjct: 720 LAQQIAHPDHQSDAQQMRLESDRHLVQISTIHKSKGLEYKIVWLPFASNFLPQSQGLFHD 779 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL---- 662 +K + + + + E RLLYV +TR Sbjct: 780 R-------------EDFITKLDLDDAKEYVDLADEERLAEDLRLLYVALTRGIYHCSVGI 826 Query: 663 --IICKHSNTSNEKKSNQRTWYDMVYDSFHNDE-------RVKKIKLTNSINKDEWIAYE 713 +I + + + ++ D + + + + A Sbjct: 827 APLIKGNRKKAGNSDLHLSALGYLLQKGQEGDSVLLTNMLTELSNETIDVQRIESFDAER 886 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKK----LFSPIKNDINEPYILNPST-------- 761 + L +E + D ++ + L + Sbjct: 887 LNLTITSTDDLSAKEISRHFDDHWRVTSYSGLSYHGSYSEEEQTLSALQFANSLAPKMDI 946 Query: 762 ------IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 + + NL + + G +H L++ + + + + Sbjct: 947 EASSDLALIESEDNLFTPHRFPKGAAPGTFLHGLMEEVDFSGDISSEWLEEQLQAAGFDI 1006 Query: 816 WPAKEYKNLLLSITRL-LENPM--MTTAMSCDSYSEVSVSGKIN---------------- 856 + + L +I + L + ++ + D E+ I+ Sbjct: 1007 QWVEMLQAWLNAILTVPLADDELCLSALLPQDRLDEMQFYLPIDSLLSAKDVDAVTHQHD 1066 Query: 857 ----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPY---- 898 + I+ G ID + ++ +YK+++ E + Sbjct: 1067 PLSKRCPPLNFEQVQGILKGFIDLTFCWKGKFYLLDYKSNYLGEDASFYTQEAMAEAMID 1126 Query: 899 -THIAQLSIYEKILKDSYPNK 918 + Q +Y L ++ Sbjct: 1127 HRYDLQYQLYSLALHRFLQHR 1147 >gi|114326871|ref|YP_744028.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1] gi|114315045|gb|ABI61105.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1] Length = 759 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 111/744 (14%), Positives = 230/744 (30%), Gaps = 135/744 (18%) Query: 8 SLNESYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66 + E E + L + + + + + + L +++ Sbjct: 84 AAREMRERVGAILGEKVEGLWLGTFHALCARMLRRHAEYV-----GLSSNFSILDSDDQM 138 Query: 67 SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126 LL T + ++ + P L +++ +D + ++ Sbjct: 139 RLLKQVAETFRVDTKRWPL--------PGLMAAIQRWKDRGLTPERVTPAEDTDYASGH- 189 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 A + Y+E + DF DL++ ++L+ + + + +IL+DE Q Sbjct: 190 ---AVAIYRAYQERLRALNAADFGDLLLFMTEILRS---RPEVLSQYHRAFRYILVDEYQ 243 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+L+Q+ +R L + + + + VGD+ QSIYS+ GAE + +LR ++ Sbjct: 244 DTNLVQYLWLRLLAQ------GRQNGDQNICCVGDDDQSIYSWRGAEVENILRFEKDFP- 296 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 ++ L ++RSTA IL + + E G + Sbjct: 297 -------GAHVVRLESNYRSTAPILGAAAGLIAHNEGRLGKTLRPGR------------- 336 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 + ++ S +DS + AR + I Sbjct: 337 -------------ANAEGEKVDVISLWDSDEE-------ARMVGDRIETARRNRHPL--- 373 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 +I VLVR T L + + I+D +A R Sbjct: 374 -------SEIAVLVRAGFQTRSFEERLITL----GVPYRVIGGLRFYERAEIRDAIAYAR 422 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGIS 479 + DDL+F ++ P E + + + E + K Sbjct: 423 LLAQPSDDLAFERIVNVPRRGVGEVALRGLHERARADSVPLLEAASRQLADGKLRGKVKE 482 Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536 ++ + + +L + + E ++ L E L Sbjct: 483 GIAAFLQGLESWRRMLGSEGHVATMATMLDESGYTEMWKQDKSPEAPGRLENLKELLRAM 542 Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 + L L+ ++ A ++V +M++H AKGLE +VFL Sbjct: 543 AEFD--------ALPGFLDHVSLVMENEQDAGDDKVSLMSLHAAKGLEFDMVFLPGWEEG 594 Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656 +F H+ + + EE RL YVG+T Sbjct: 595 LFPHQR--------------------------------ALDEGGLKSLEEERRLAYVGLT 622 Query: 657 RASDQLIICKHSNTS---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 RA + +I +N N + + + + + + ++ + + Sbjct: 623 RARQKAVISHAANRRIYANWQSAIPSRFIEELPPDCIQSQGSAVMEREQRLRGGFGAGVQ 682 Query: 714 WSTHHPENTPLEREETIKQLMDEQ 737 + + P +++ ++ Sbjct: 683 FPMLATRHAPRAAAPRVREAWEQP 706 >gi|212212385|ref|YP_002303321.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212] gi|212010795|gb|ACJ18176.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212] Length = 1110 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 148/910 (16%), Positives = 304/910 (33%), Gaps = 138/910 (15%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112 + + +++ FLT++ +K + ++ ++ DL +L K+ ++ + Sbjct: 274 DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332 Query: 113 RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 T +++ L A ++ +DF ++ + L + Sbjct: 333 EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++D++I H+LIDE QDTS+IQ+ +I L + RTLF VGD QS Sbjct: 393 PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F AE L+ K + + + L +FRS +++ ++ F + Sbjct: 448 IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLTLRNNFRSQKNLIDWFNQTFEPTFPKE 502 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 S + + H ++ N + ++ S ++ +A Sbjct: 503 ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A +I I + K I +LVR R IT R I Sbjct: 541 ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 + L + I+DL++L R + D ++++ +L++P + D+ + ++ Sbjct: 586 AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645 Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + G ++ + + + I A G + Sbjct: 646 WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 + L + +L+ L +L Q I N ++IMT+H A Sbjct: 706 TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637 KGLE V L + S H + + I P S+ + + + L + Sbjct: 758 KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693 K+ T E RLLYV TRA + + N + K + ++ ++++ Sbjct: 818 IEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 I +++ + + +++L + P L + + Sbjct: 878 EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSPESKP 921 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808 P++ G++IH+ L+ I + Sbjct: 922 LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964 Query: 809 CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861 + +L + E ++ ++++ L + +S SE ++ + Sbjct: 965 QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020 Query: 862 IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916 I ID I + +I +YK+ + ++ H AQL Y Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSVHEAQLQQYANAFHALDS 1080 Query: 917 NKSLVCLLIY 926 + + L + Sbjct: 1081 -RPIKLGLYF 1089 >gi|77359094|ref|YP_338669.1| DNA-dependent helicase II [Pseudoalteromonas haloplanktis TAC125] gi|76874005|emb|CAI85226.1| DNA-dependent ATPase I and helicase II; highly similar to PSHA_1_2804 [Pseudoalteromonas haloplanktis TAC125] Length = 721 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 101/585 (17%), Positives = 201/585 (34%), Gaps = 121/585 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y+EA + ++DF ++++ + ++LK + Q H+L+DE QD Sbjct: 167 QMMLRVYAAYQEACDRAGLVDFAEILLRSYEVLKNNPT---LLRHYQQRFAHMLVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ IQ+ ++ L D ++ VGD+ QSIY + GA+ + + R Sbjct: 224 TNTIQYAWLKLLAGD----------SNSIMIVGDDDQSIYGWRGAKIENIKRFLTDFS-- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RSTA IL + + G S Sbjct: 272 -------AETIRLEQNYRSTATILKASNALIQNNSERMGKS------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + S + F+ L + AR ++ + + + Sbjct: 306 --LW-------TDGNEGEPISIYAAFNELDE-------ARFVSSKLRSWLNAGNAL---- 345 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +D +L R + ++ + + IKD ++ R Sbjct: 346 ------QDAAILYRSNAQSRVLEEAM----LQEGLKYRIYGGMRFFERQEIKDALSYLRI 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480 I +++DD +F ++ +P + + I R E+ ++ Q + Sbjct: 396 IGNRQDDAAFERVINTPARGIGDKTLSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGA 455 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 ++ + + + H+ ++ + + G + ++ L+E ++ Sbjct: 456 VSKFVELVEHIEDKISDLTLHEQAKYVIQTSGLMAMYQAEKGEKGRARVENLEELISACD 515 Query: 538 RNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + E + S LQ ++ + + V++MT+H+AKGLE P+VF+V Sbjct: 516 QYELPEEEEYSSPLQGFLAHTSLESGE--GQAEEHEDAVQMMTLHSAKGLEFPLVFMVGV 573 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F + + EE RL YV Sbjct: 574 EEGMFPSQQSN----------------------------------EESGRLEEERRLCYV 599 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 GMTRA D+L I + + T + + + +I Sbjct: 600 GMTRAMDKLYISHAESRRLYGQEKYHTPSRFLREIPEDCVEEIRI 644 >gi|257456971|ref|ZP_05622152.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] gi|257445680|gb|EEV20742.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] Length = 661 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 99/581 (17%), Positives = 177/581 (30%), Gaps = 121/581 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + L Y+ K +DF+DLI+ L + + ++++DE QD Sbjct: 156 AVYRPLYNEYQAGLKLFNAVDFDDLIMLPIKLFTEHPD---VLAVYKNRYRYVMVDEFQD 212 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 TS+ Q++++ + +D + VGD+ QSIYS+ GA + + ++ Sbjct: 213 TSIQQYQMMHLIADD------------NVCVVGDDDQSIYSWRGANYENIRLFEKDFPHL 260 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I+L ++RST IL + V S N + + Sbjct: 261 VE--------IKLEQNYRSTGTILAAANGVISHNTNRKEKA------------------- 293 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + + + A IA TI + Sbjct: 294 --LW-------SGNGSGKPIEIFIPENEAAE-------ADFIADTI---------LTEKM 328 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + D VL+R I D I + IKD+++ R Sbjct: 329 RENRSYADFGVLIRTNGLGRAIEEAF----LDANIPYRMSGGTSFFQRKEIKDIISYLRV 384 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ---- 482 I + +DD++ + ++ +P + + + + ++ I F+ Sbjct: 385 IANPDDDINLLRIINTPRRGIGKKTLEVLSAIATEKDCSIRMAIHALLERPPDDFREKSL 444 Query: 483 ----HVIKYIHELIHIAQF-----CSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDE 531 ++ I I Q+F ++ Sbjct: 445 ADLEEFVELISSERKQLLSGKGLANKVRKLVERIQYFDYLTQEFQKNEKAARFKFLNIES 504 Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFL 590 L E N + L + L + + + EV IMT+H AKGLE PVVF+ Sbjct: 505 LLQSIDTWETNPDNFDPSLYTYLNRITLLSRDDQNEEDTGEVNIMTIHAAKGLEFPVVFI 564 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 + H EE RL Sbjct: 565 AGAEEGIIPHARSM---------------------------------EENAGDVEEERRL 591 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 YV +TRA D+LII + + + + + Sbjct: 592 FYVAITRARDKLIITSCRTRRRQAGLLECSPSPFLEEIPAE 632 >gi|238750684|ref|ZP_04612183.1| DNA helicase II [Yersinia rohdei ATCC 43380] gi|238711074|gb|EEQ03293.1| DNA helicase II [Yersinia rohdei ATCC 43380] Length = 720 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 105/552 (19%), Positives = 187/552 (33%), Gaps = 116/552 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ I Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + VGD+ QSIY + GA+ + + R + Sbjct: 229 QYAWIRLLAGD----------RANVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST++ILT + + + + G + LW Sbjct: 273 --GAETIRLEQNYRSTSNILTAANALIAHNDGRMGKN---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S F+ L + AR + I Sbjct: 310 -------TEGAEGEPISLYCAFNELDE-------ARFVVSRIKAWQDNGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + D IKD +A R I ++ Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGGQRFFDRQEIKDALAYLRMISNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P + + + R T+++ + S Q Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRALLQEKVLAGRAASALQRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 ++ + L H H ++ + G + ++ L+E +N T + Sbjct: 462 VELVDSLAHETADMPLHIQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSY 521 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 Q+ L L + L + A + V++MT+H+AKGLE P VF+V +F Sbjct: 522 QDEDQDLTPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607 Query: 660 DQLIICKHSNTS 671 +L +C + Sbjct: 608 QKLTLCYAESRR 619 >gi|254503334|ref|ZP_05115485.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11] gi|222439405|gb|EEE46084.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11] Length = 822 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 102/561 (18%), Positives = 183/561 (32%), Gaps = 114/561 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y++ DF DL+++ L K + + ++L+DE QDT++ Sbjct: 226 RKLYQEYQDRLSILNAADFGDLLLHVITLFKT---RTDVLADYQRRFRYMLVDEYQDTNI 282 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + VGD+ QSIY + GAE +LR + Sbjct: 283 AQYMWLRLLAQ----------GNPNVCCVGDDDQSIYGWRGAEVDNILRFEHDF------ 326 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + +I L ++RST+ IL + S E G + + Sbjct: 327 --KGAEVIRLERNYRSTSHILAAASHLISFNEGRLGKTLFTDFH---------------- 368 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + S S +DS + AR I I + Sbjct: 369 ----------EPDHDLVSVASVWDSEEE-------ARTIGDEIEALQTKGHAL------- 404 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 ++ VLVR L ++ + + I+D MA R ++ Sbjct: 405 ---NEMAVLVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYFRCVMQ 457 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483 DDL+F ++ +P + + + R E + + ++ + + Sbjct: 458 PADDLAFERIVNTPKRGLGDATLKLVHELARAERIPLMQAASQLIDSEELKPKPRNSLKT 517 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 V+ D +IL + + E LD E+ Sbjct: 518 VLDNFERWRRQLDSMKHTDLAEIILDESGYTEMWRQDRSAEAPGRLDNLKELIRSMEE-- 575 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + LE + R + + V IMT+H+AKGLE VFL +F H+ Sbjct: 576 ---FESMAGFLEHISLVMDRDSADAQDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQR- 631 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661 + ++ EE RL YVG+TRA + Sbjct: 632 -------------------------------ALDESGRAGLEEERRLAYVGVTRAKKRAK 660 Query: 662 LIICKHSNTSNEKKSNQRTWY 682 L + + +S+ + + Sbjct: 661 LYFASNRRIHGQWQSSIPSRF 681 >gi|91212215|ref|YP_542201.1| exonuclease V subunit beta [Escherichia coli UTI89] gi|91073789|gb|ABE08670.1| exodeoxyribonuclease V beta chain [Escherichia coli UTI89] Length = 1183 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 218 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 275 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 276 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 334 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 335 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 393 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 394 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 445 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 446 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 489 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 490 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 545 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 546 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 602 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 603 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 654 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 655 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 708 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 709 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 768 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 769 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 815 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 816 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTAQI 875 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 876 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 935 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 936 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWELV 992 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 993 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1052 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1053 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1112 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1113 QYQLYTLALHR 1123 >gi|56696067|ref|YP_166421.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3] gi|56677804|gb|AAV94470.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3] Length = 779 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 110/664 (16%), Positives = 189/664 (28%), Gaps = 139/664 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ ++ +DF DL+++ + + + + + ++L+DE QDT++ Sbjct: 176 ELYAQYQTRLRELNAVDFGDLLLHMVTIFQTHPD---VLEQYQRWFRYVLVDEYQDTNIA 232 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L R + VGD+ QSIY + GAE +LR ++ Sbjct: 233 QYLWLRLLAG----------GHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 276 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL V E G +LW Sbjct: 277 --GAHVVRLEQNYRSTPHILAAASNVIRGNEGRLGK---------------------ELW 313 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++D + AR I I M G R I Sbjct: 314 -------TDAQEGEKVRLIGHWDGEEE-------ARWIGEEIEAMQGG-----TRGVRPI 354 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 ++ +LVR + + + I+D MA R + S Sbjct: 355 SLDEMAILVRAAHQMRAFEDRF----LTIGLPYKVIGGPRFYERMEIRDAMAYFRLVTSP 410 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484 EDDL+F ++ +P + I R ++ E G + Sbjct: 411 EDDLAFERIVNTPKRGLGDKAQQAIRAVARENGVSLVEGARIAVENGLIKGKGGKALGEL 470 Query: 485 IKYIHELIHI------------------------AQFCSPHDFFTLILGAKKGRQQFISR 520 + + A S + +IL + + Sbjct: 471 TDGLARWAALTRGPRIEIDDDSVIEDGAAPIQFGAPEMSHIELAQVILDESGYTAMWQND 530 Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E ++ L E +N E L LE + + +V IMT+ Sbjct: 531 KTPEAPGRLENLKELVNQLDNFEN--------LQGFLEHVSLVMDNEQDSGGAKVSIMTL 582 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H AKGLE P VFL +F + + Sbjct: 583 HAAKGLEFPAVFLPGWEDGLFPSQRS--------------------------------MD 610 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA + I +N + + + + V Sbjct: 611 ESGLKGLEEERRLAYVGITRAEEVCTISFAANRRVFGQWQNALPSRFIDELPEDHVEVLT 670 Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 + + + + D+ Sbjct: 671 PPGLYGGGLSSPGIESRAAAADGYNSPGWKRLQARQGQHGLSQPRESRNTVIDLAAVASF 730 Query: 758 NPST 761 S Sbjct: 731 TLSA 734 >gi|294635091|ref|ZP_06713603.1| exodeoxyribonuclease V, beta subunit [Edwardsiella tarda ATCC 23685] gi|291091513|gb|EFE24074.1| exodeoxyribonuclease V, beta subunit [Edwardsiella tarda ATCC 23685] Length = 1186 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 130/971 (13%), Positives = 277/971 (28%), Gaps = 141/971 (14%) Query: 12 SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLS 70 + K W QV+ + + + + L K + +Q + ++ + Sbjct: 226 ARIEALKAAWREQGGQVAALIADSGVDKRSYSSRHLPKWLDEMAAWAQQETLDYQLPGSI 285 Query: 71 SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130 F + + + + + + Sbjct: 286 ERFAQATLEQKTTKGSAP---------------RHALFAAVEALLAEPLSLRDVLLAQAL 330 Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + ++ K++ L F+DL+ L + I Q +IDE QDT Sbjct: 331 VAVRESVQQEKRRRAELGFDDLLSRLAQAL-DAQAGEALAAAIRQRYPVAMIDEFQDTDP 389 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ + + + L +GD KQ+IY+F GA+ L+ + + Sbjct: 390 QQYRIFHHIYG------GAAQAETALLLIGDPKQAIYAFRGADIFTYLQARAAVEA---- 439 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 L ++RS ++ V+++FS+ E + + Sbjct: 440 ------CYTLGTNWRSAPGMVQAVNRLFSLSPAPFLFDEIPFLPVAAAPKNAHHRLLI-- 491 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF------- 363 D + W Q+ ++A+R A I + + Sbjct: 492 --------DDVAQAALDLWLYDVPGCSQQEYLHVMAQRCATQIRDWLSAGQRGEARLIGE 543 Query: 364 -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422 + + R + A D+ +LVR R + ++ L SV ++R + +DL+ Sbjct: 544 DESAEGRPLCAADMTILVRSRHEATVMRDALSALNIP---SVYLSNRDSVFSTPEARDLL 600 Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482 L + IL+ + L L S ++ + + V + + + Sbjct: 601 WLLQAILAPAQSRTLRSALAVGLLGLSAAELDALNQDERRWDAVVDEFDDYRRHWQR--R 658 Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542 V+ + ELI + +L G ++ L E L + ++ Sbjct: 659 GVLPMLRELIGRRR------LAENLLATSGGERRLTDVL------HLGELLQEAAQQLES 706 Query: 543 SYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 + ++ L +++ + + ++ + V+++T+H +KGLE PVVFL + Sbjct: 707 EPALVRWLAQQIDSPQPQAESQQMRLESDRHLVQVVTIHKSKGLEFPVVFLPFVATFRRQ 766 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + Q+ + + E RLLYVG+TR+ Sbjct: 767 RQ-------------GLYHESHSLQAVWDLCADEQALARADQERLAEDLRLLYVGVTRSI 813 Query: 660 DQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD-EWIAY 712 ++ + E + ++ D L + D Sbjct: 814 YYCALGIAPLVLGNRKKQGESDLHHSALGYLLQRGDACDAEGLHQALQALQDDDIRLTRL 873 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLF-------SPIKNDINEPYILNPSTIDTK 765 PL T+ + + + +L ID Sbjct: 874 APVDVEAWQGPLATARTLCAKAFNRSLRDTWRVTSYSALQQHGSSGRYLELLPHLDIDAA 933 Query: 766 GKTNLES-----LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820 G+ S + G +H LL+ + + Sbjct: 934 GEHRAPPAPSLDAHSFPRGAAPGTFLHSLLEALDFTQPIDELWLAERCQEQGLAPEWVPA 993 Query: 821 YKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCPKK----------------- 860 + L I + + ++ E+ I P Sbjct: 994 LAHWLTQILQAPLDAQGVSLSQLAPTHCQPELQFYLPIARPLDPARLDEVIRRHDALSAQ 1053 Query: 861 ---------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 D ++ G ID + + ++ +YK++ + + + Sbjct: 1054 SPPLAFNAVDGMLKGFIDLVFCHRGRYYLLDYKSNWLGETGEAYSDAAMAAAMVSHRYDL 1113 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1114 QYQLYSLALHR 1124 >gi|71082723|ref|YP_265442.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062] gi|71061836|gb|AAZ20839.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062] Length = 678 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 105/550 (19%), Positives = 185/550 (33%), Gaps = 122/550 (22%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + L Y++ DF DLI++ +L+K IR +IL+DE QD Sbjct: 170 RTIRPLYKIYQQKLLDLNACDFGDLILHVVKILEKNHD---IRNIYSNNFKYILVDEYQD 226 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ IQ + L+E + L VGD+ QSIYS+ GAE K L ++ + Sbjct: 227 TNYIQSRWLNLLSE----------KHKNLCCVGDDDQSIYSWRGAEIKNFLEFDQVYKNS 276 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 +I L ++RS+ +IL+V + + +N G + +T + Sbjct: 277 --------KVIRLEENYRSSQNILSVASNLIANNQNRVGKTLKTTM---------EEGDL 319 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 V+L + + A ++ I + Sbjct: 320 VKLNCFKNGKDE--------------------------AIGVSDEIEKKLK--------- 344 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +I +LVR T + + IKD +A R Sbjct: 345 -KKYSFNNIAILVRAIFQTREFEERF----LKIGLPYRILGGTKFYERAEIKDCVAYLRL 399 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------ 480 I +DDL+F ++ +P E I I + ++ +K + K Sbjct: 400 IHQPKDDLAFDRIVNNPKRAIGESTIKLIHEFSKTNAVSLEIASKKLIEENLIKPKTKIG 459 Query: 481 FQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535 + + + + + + L+L ++ E ++ + E L+ Sbjct: 460 LSSFLFLMDKWRNDINIKKINHVKLLQLVLDESGYSSMLKNKKDLENENRLENIKELLSA 519 Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595 + L + LE + +V +MT+H +KGLE VVFL Sbjct: 520 MKDFDN--------LENFLEHVALATSVDQDWDGEKVNMMTMHGSKGLEFDVVFLPGWEE 571 Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655 +F H+ I+ ++ EE RL YVG+ Sbjct: 572 GLFPHQKS--------------------------------IEEKGQNGLEEERRLAYVGI 599 Query: 656 TRASDQLIIC 665 TRA + +I Sbjct: 600 TRAKKKALIS 609 >gi|168231088|ref|ZP_02656146.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468697|ref|ZP_03074681.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455061|gb|EDX43900.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334551|gb|EDZ21315.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1181 Score = 272 bits (696), Expect = 2e-70, Method: Composition-based stats. Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 ++ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSMAQELIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPINPQWVQEKLELSGFETRWQPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|261392291|emb|CAX49817.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 8013] gi|325134572|gb|EGC57216.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M13399] Length = 671 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 113/611 (18%), Positives = 204/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A L A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARLYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV S G ++ + V Q Sbjct: 286 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQ----------------- 316 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 S A + I ++G D Q D VL R + Sbjct: 317 ------SEQHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ + Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALALLNNTNRQHLQTFMDMFGSYRAKAETGEAGELIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + + G + + +++ R ++ EL + Sbjct: 478 NLLEEIDYKNHLMQNEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTIALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V++ T+H +KGLE P VFLV V H Sbjct: 538 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCIKRKKQGIWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|197116476|ref|YP_002136903.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem] gi|197085836|gb|ACH37107.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem] Length = 732 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 101/695 (14%), Positives = 214/695 (30%), Gaps = 145/695 (20%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQTLQQASQTQCIEERFS 67 + +++ L E G P K A +++ + Sbjct: 22 LLVLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKAAGEMRERLAHMLGDGELP 81 Query: 68 LLSSFFLTQKFTPQKNII------------TQEINKKSPDLKEKL---------KKSQDE 106 L+S+F T + I ++ K D +L K Sbjct: 82 LISTFHSTCARILRSEIRHLGYDSNFAIYDDRDCEKLLKDCAAELNLDEKRYPAKALAGA 141 Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166 + +++ + + Y+E K+ +DF DL++ + Sbjct: 142 LDEFKNQGLAPDDVPTDSPYQATLARVYRCYQERLKRCNAVDFGDLLLLAVQ---LLEQV 198 Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 +R K Q I++DE QDT+ +Q+ +++ L + + L VGD+ QSI Sbjct: 199 KEVRDKYLQRYRWIMVDEYQDTNPVQYRLVQLLAGE----------RKNLCVVGDDDQSI 248 Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 Y + GA+ + +L ++ +++L ++RST IL V + Sbjct: 249 YGWRGADIRNILEFEKDFP--------GVKVVKLEQNYRSTKTILDGAWNVVQKNRGRKP 300 Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346 LW + ++ + + + + A Sbjct: 301 KR---------------------LW-------TDNPDGERIVYRTLPNEWEE-------A 325 Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 R + + ++ V R + + ++ Sbjct: 326 RTVCRETERFLDEGGDL----------SEVAVFYRTNAQSRAVEDAM----VSAGVAYHM 371 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465 L +KD++A + + + DD++ ++ +P + ++ + Sbjct: 372 VGGVRFYARLEVKDILAYLKVLDNPSDDVALKRIINTPPRGIGNTTVQRLSEFAAEKGIP 431 Query: 466 VYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 +Y+ + + A K + I A+ + + I+ + + Sbjct: 432 LYDAMLEGAFGPLLSVAAKGKVAAFAQEIDGYKEKAEQMPLSELTSTIIYESGYFARLKA 491 Query: 520 ---RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 E I+ L E + E L + + ++ +++ + +M Sbjct: 492 LGSDEAQERIENLQELVTAMQAYESGPGEKGLADFLEQVALVS-DLEQEGDGKKSSATLM 550 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H+AKGLE P+VF++ ++F H + Sbjct: 551 TLHSAKGLEFPLVFIIGMEERLFPH----------------------------------V 576 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + EE RL YVGMTRA +L + Sbjct: 577 RALEDPAQMEEERRLCYVGMTRAKKRLFLLNVRRR 611 >gi|218559832|ref|YP_002392745.1| exonuclease V subunit beta [Escherichia coli S88] gi|218366601|emb|CAR04355.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli S88] gi|294491122|gb|ADE89878.1| exodeoxyribonuclease V, beta subunit [Escherichia coli IHE3034] gi|315289392|gb|EFU48787.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 110-3] gi|323951722|gb|EGB47597.1| exodeoxyribonuclease V [Escherichia coli H252] Length = 1180 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTAQI 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWELV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|15892547|ref|NP_360261.1| DNA helicase II [Rickettsia conorii str. Malish 7] gi|81595570|sp|Q92HZ6|UVRD_RICCN RecName: Full=Probable DNA helicase II homolog gi|15619709|gb|AAL03162.1| DNA helicase II [Rickettsia conorii str. Malish 7] Length = 653 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 111/567 (19%), Positives = 191/567 (33%), Gaps = 121/567 (21%) Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176 + + L +AK + Y++ + VLDF DL++ N+L K + I ++ Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215 Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236 +ILIDE QDT+++Q+ R L + + + VGD+ QSIY + GAE Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265 Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296 +LR ++ +II+L ++RST IL V + +N G + Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309 Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356 LW + + + W+ + AR IA I + Sbjct: 310 -------------LW---TDRENGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342 Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + A +I +LVR T + + + + Sbjct: 343 VRE---------NRYNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475 I+D++A R L+Q D+L+ ++ P + KI + + I++ Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449 Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 G K + ++ I +P + IL + E I Sbjct: 450 IGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509 Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584 + ++E L ++ +E ++ V IMT+H AKGLE Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561 Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644 VVFL VF + L ++ Sbjct: 562 FDVVFLPGWEEGVFPSQRSLDEEGEKGLEEE----------------------------- 592 Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671 R+ YVG+TRA L I + Sbjct: 593 ---RRIAYVGITRAKKDLYITHAESRK 616 >gi|332087360|gb|EGI92488.1| exodeoxyribonuclease V, beta subunit [Shigella boydii 5216-82] Length = 1180 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 125/875 (14%), Positives = 274/875 (31%), Gaps = 129/875 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------YHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFIFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKIL 911 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118 >gi|205353934|ref|YP_002227735.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273715|emb|CAR38708.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629048|gb|EGE35391.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1181 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHNLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQAAMATAMQAHRYDLQYQLYTLALHR 1120 >gi|198242178|ref|YP_002216966.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207858257|ref|YP_002244908.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197936694|gb|ACH74027.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206710060|emb|CAR34415.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624733|gb|EGE31078.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1181 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHNLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQAAMATAMQAHRYDLQYQLYTLALHR 1120 >gi|15612436|ref|NP_224089.1| putative ATP-dependent DNA helicase [Helicobacter pylori J99] gi|4155998|gb|AAD06960.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99] Length = 681 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 96/572 (16%), Positives = 182/572 (31%), Gaps = 118/572 (20%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y+ A KK+ ++DF+DL+ + +L+ + + + + ++I++DE QDT+ +Q Sbjct: 158 YELYQNALKKDNLVDFDDLLCLSLKILQDNE---KLAKETSERYHYIMVDEYQDTNALQL 214 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E ++ L+ + L VGD+ QSIY F GA+ +L + + Sbjct: 215 EFLKQLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I++L ++RS+A+IL + + S ++ + S + Sbjct: 257 GAKIVKLETNYRSSAEILACANSLISHNQHRHIKTLQSFKGSHKSVICKEYPTQKE---- 312 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + +AY I ++ N Sbjct: 313 -------------------------------ESLDVAYQIKALLKKGENLEN-------- 333 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 I +L R + I L I + +KD +AL + ++D Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALALMHVVAKKDD 387 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHVIK 486 +L P + I + E + E K + Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDEEGLNLEEALKIGAFKDKLNPKNEYALKKFTA 447 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545 I L A S F L + + E + E L+ + + + + Sbjct: 448 MIGRLRE-AFEISVEKFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L+ L + + + N +V M+VH +KGLE VF++ F H Sbjct: 507 --HSLLDFLNESALDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++S EE RL YV +TRA ++L + Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 S + + + ++ + Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLQQDKPP 619 >gi|238027765|ref|YP_002911996.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1] gi|237876959|gb|ACR29292.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1] Length = 789 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 111/736 (15%), Positives = 214/736 (29%), Gaps = 158/736 (21%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K Q +++ ++ + + L Y++ ++ V+DF +L++ +LL Sbjct: 138 KNVQYFINNAKEQGLRPDKVEANDSFNRMFVQLYQAYDQQCQREGVVDFPELLLRCFELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 +R HIL+DE QDT+ +Q+ ++ L + +FAVG Sbjct: 198 SYNPA---LRAHYQARFRHILVDEFQDTNKLQYAWLKLLAGE----------QNAIFAVG 244 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + + + R ++I+L ++RS +IL + + + Sbjct: 245 DDDQSIYAFRGANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANHLIAH 296 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 G + + G V+++E + Sbjct: 297 NSRRLGKNLRTD---------AGHGEPVRVYEAATDSQE--------------------- 326 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I ++I + ++ VL R + I Sbjct: 327 -----AGWIVEEIRSLINGG----------MARSEVAVLYRSNAQSRAIEHTL----MTA 367 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQ 459 I+ + IK +A R I + DD +F ++ P I ++ Sbjct: 368 GIAYRVYGGLRFFERQEIKHALAYLRLIDNPSDDTAFARVVNFPTRGIGARSIEQLADAA 427 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518 R + I + I +L + S + ++ A + Sbjct: 428 RLHNCAMAAAIPYVTGKAGTSLGAFANLIAKLRAETRQMSLPEMVEYVVRASGLADFYQG 487 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549 R G + ++ L E +N L Sbjct: 488 EREGQDRLENLQELVNAAAAFVSEEGYGLDTPARSIPLRPGASAAPELAAGGDAAGAVLA 547 Query: 550 ----------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 L L A + V++MTVH AKGLE VF+ Sbjct: 548 PAAPDDPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITG 607 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F H++ L+ EE RL+Y Sbjct: 608 LEEGLFPHENS----------------------------------ALETDGLEEERRLMY 633 Query: 653 VGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYD---SFHNDERVKKIKLTNSINK 706 V +TRA ++L + + + + + ++D + + + + + Sbjct: 634 VAITRAKERLYLSFAQSRLLHGQTRYNIRSRFFDELPQQVLKWLTPQVEAGSRWGGRADN 693 Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766 W ++ + N + + Sbjct: 694 AGWGRNWFARPGGAAGGTRDAVVDAAVTAPLPAFANAQRAAGNGFKVGQPVFHTKFGEGT 753 Query: 767 KTNLESLLSDNQTFNR 782 T LE +D + R Sbjct: 754 VTALEGEGADAKAQVR 769 >gi|269127954|ref|YP_003301324.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183] gi|268312912|gb|ACY99286.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183] Length = 1128 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 151/1104 (13%), Positives = 285/1104 (25%), Gaps = 232/1104 (21%) Query: 9 LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68 + + + + VS + Y + L+ + + L Sbjct: 92 PQDELDRLGGEAALDGEPAVSTYHSYAARLF-----GDHALRAALEPTMRLISPAMAWQL 146 Query: 69 LSSFFLTQKF-----TPQKNIITQEINKKSPDLKEKLK----------KSQDEFIKIRDR 113 + + + + + + S +L E L+ + + +F + R Sbjct: 147 AARVVDDYDGAMDGIDWRPDTVVRAVLDLSGELAEHLRTPEDVREIGRRLRAQFDALPGR 206 Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 K +T L Y+ AK + VLD+ D + + + I Sbjct: 207 RGAAKNVLATQEIRERLLPLVEAYQRAKIEREVLDYGDQVALAARIARDHPDVGMI---E 263 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 +L+DE QDTS Q ++ SL + AVGD QSIY + GA Sbjct: 264 RSRYAVVLLDEYQDTSHAQLVLLTSLFG----------GGHPVTAVGDPCQSIYGWRGAG 313 Query: 234 PKRVLREKRINQ------------------KRATNAGQKFSIIELPLSFRSTADILTVVD 275 + +R + L +S+R+ IL V Sbjct: 314 SGNLTGFPEDFPLAPAVPSRVAAVPPPRPGRRPPRHARPAPTATLSISWRNGERILEVAA 373 Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335 ++ + + + + R L V + Sbjct: 374 RI---QQGLRADTANVPRLRPGEGRRGRGRVECALLPTVTA------------------- 411 Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNG----KKRVIQAKDILVLVRKRKDTPLITF 391 A IA I + D + + ++ I VLVR+R P Sbjct: 412 ---------EAEHIAERIRRLRAADPELAPDGLPWDEGPLKYSHIAVLVRRRSQIPP--- 459 Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451 R + I V L ++D++A R + S +L P + Sbjct: 460 -LRKALEERDIPVEVVGLGGLLTVPEVQDVVATLRVVHDPTAGASLARLLTGPRWRIGPR 518 Query: 452 DIFKICTQRHETETVYEY------------------------------------------ 469 D+ + + + Sbjct: 519 DLVALGRRARRLASENTRDITPPPDASELRPEPAANAEETDPLRQVVIELTQETGSLVDA 578 Query: 470 ------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 ++ G+++ + + + L D + + +R G Sbjct: 579 LDDLGDPSAYSPEGLARLRRLAAELRTLRSQVG-LPLPDLVAEVERTLGLDIEVAARSGL 637 Query: 524 E---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS---ANHNEVRIMT 576 + LD F+ E++ +L ++ L+ + + + V+++T Sbjct: 638 DPAGARADLDAFIETAASFAEESENPTLGAFLAYLKAAESEEFGLPAGRVSESDSVKLLT 697 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ------------ 624 VH AKGLE PVV + K I PS P+ Sbjct: 698 VHAAKGLEWPVVVVPGLCYLPSGSGRPVKGSIFPSPPQQSTRWTDNPRLLPFELRGDYEK 757 Query: 625 ------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678 + + E RL YV +TRAS LI H + + + Sbjct: 758 GNLPRLNGLTKADLDRFKDECADRDLREERRLAYVAVTRASHLLIATGHRWGATARPLHP 817 Query: 679 RTWYDMVYDSFH-----------NDERVKKIKLTNSINKDEWIAYEWSTHHP-------- 719 + + + + E L W A + Sbjct: 818 SPFLEEIRQACETGAGRVVSWADPPEEGAANPLQAEAEPGRWPATPEGRRYAAIVEGAEM 877 Query: 720 -------------------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 E + + + + P L S Sbjct: 878 VRDAMVGRIAPWAGDDGLTEADRRRMTAWARDVELLLAERDRGRGGDVLQVELPAKLTVS 937 Query: 761 TIDTKGKTNLE--------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812 T+ + E RG H+ L+ + + Sbjct: 938 TLVALSRDPQEVARSIRRPMPRPPAPYARRGTAFHRWLE-------SRWGQQRLLDPDEL 990 Query: 813 AKLWPAKEYKN-LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871 + +L + R E S + + D ++ GR+D + Sbjct: 991 PGAADEGAADDSMLTELQRRFEESEWA------SRRPLDIEVTFETVLGDRVLRGRMDAV 1044 Query: 872 SIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVS 928 + + ++KT E QL+ Y D P + + YV Sbjct: 1045 FTAPDGGYEVVDWKTGRPPADEDFRHA---AVQLAAYRLAWADLAGVPLEKVSAAFHYVR 1101 Query: 929 EPKVFIIPQNKLNKA-FAEISTKI 951 + P + L++A + I Sbjct: 1102 YNRTIR-PADLLDRAGLTALLENI 1124 >gi|43297|emb|CAA25321.1| pot. DNA helicase II [Escherichia coli] Length = 720 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 99/583 (16%), Positives = 184/583 (31%), Gaps = 116/583 (19%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + + Y+EA + ++DF +L++ ++L + I + +IL+DE Q+T+ Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQNTNN 227 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 IQ+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 I L ++RST++IL + + G L Sbjct: 273 ---GAETIRLEQNYRSTSNILNARNALIENNNGRLGKK---------------------L 308 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W + + S F+ L + R + I Sbjct: 309 W-------TDGADGEPISLYCAFNELDET-------RFVVNRIKTWQDNGGAL------- 347 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 + +L R + ++ + + IKD ++ R I + Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483 + DD +F ++ +P + + + R T+++ ++ S Q Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540 ++ I L H ++ R + G I+ L+E + T + Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520 Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 L L + L + + V++MT+H+AKGLE P VF+V +F Sbjct: 521 YNEEDEDLMPLQAFLSHAAVEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580 Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658 + EE RL YVG+TRA Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606 Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 +L + K + + +++ T Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649 >gi|254670269|emb|CBA05543.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153] gi|325136509|gb|EGC59113.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M0579] Length = 671 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 113/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGDPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + +++ R ++ EL + Sbjct: 478 NLLKEIDYENHLLASEESKAGEIKWRNVGDLVSWFARKGGEDGKNVIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|319782887|ref|YP_004142363.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168775|gb|ADV12313.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 861 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 115/557 (20%), Positives = 179/557 (32%), Gaps = 115/557 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E K DF DL+ + +L+ + + + +IL+DE QDT+ Sbjct: 210 RELYKAYQERLKTLNACDFGDLLCHPIRILRANPD---VLKEYHKRFKYILVDEYQDTNT 266 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPR-------TLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 Q+ +R L + + VGD+ QSIY + GAE +LR + Sbjct: 267 AQYMWLRLLAQRPQGKPGEIGRSSAETRATVNICCVGDDDQSIYGWRGAEVDNILRFDKD 326 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 +II L ++RSTA IL + + E G + + Sbjct: 327 FP--------GATIIRLERNYRSTAHILGAASHLIAHNEGRFGKTLFTDR---------- 368 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + + +DS + AR I TI Sbjct: 369 ----------------NDPEDGKVNVHAAWDSEEE-------ARAIGETIEAYQRQKH-- 403 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 D+ +LVR L ++ + L I+D MA Sbjct: 404 --------NLNDMAILVRASFQMRAFEDRFITL----GLNYRVIGGPRFYERLEIRDAMA 451 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NC 476 R + DDL+F ++ P E I +I T R + E K A Sbjct: 452 FFRVVAQGADDLAFERIVNVPKRGLGEATIRQIHDTARALRIPMLEAAAKLAESDELKPK 511 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 + + V + + IL + + E ++ L E + Sbjct: 512 PRAALREVAANFERWQKALETTPHTELAETILEESGYTDMWKNDRSVEAPGRLENLKELI 571 Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 E L S LE + +A + V IMT+H+AKGLE VFL Sbjct: 572 RSMEEYES--------LRSFLEHVALVMDAEQNAGLDAVSIMTLHSAKGLEFETVFLPGW 623 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F H+ + +S EE RL YV Sbjct: 624 EEGLFPHQR--------------------------------ALDEGGRSGLEEERRLAYV 651 Query: 654 GMTRASDQLIICKHSNT 670 G+TRA L I SN Sbjct: 652 GLTRAKKNLHIWFVSNR 668 >gi|217327692|ref|ZP_03443775.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|217320059|gb|EEC28484.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. TW14588] Length = 860 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 124/859 (14%), Positives = 269/859 (31%), Gaps = 129/859 (15%) Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 L + K++ L F+D++ + L+ + + I + Sbjct: 4 RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAM 62 Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241 IDE QDT Q+ + R + H L +GD KQ+IY+F GA+ ++ + Sbjct: 63 IDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKAR 114 Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301 T L ++RS ++ V+K+FS ++A E ++ Sbjct: 115 SEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKN 164 Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 + + P + W +S S +A+ A I + + Sbjct: 165 QA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVSAAQIRDWLQAGQ 214 Query: 362 -----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 + + R ++A DI VLVR R++ + L+ SV ++R + + L Sbjct: 215 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETL 271 Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476 ++++ L + +++ E + + L + + + DI + E+ Sbjct: 272 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVE 323 Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536 ++ + + + + S + +L G ++ + E L Sbjct: 324 EFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLTDIL------HISELLQEA 377 Query: 537 ---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 L +E L + I E + + + ++ + V+I+T+H +KGLE P+V+L Sbjct: 378 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI 437 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 + + ++ N + + + E RLLYV Sbjct: 438 TNFRVQDQAFYHDR-------------HSFEAVLDLNAAPESVDLAEVERLAEDLRLLYV 484 Query: 654 GMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711 +TR+ L + +KK + + E L I Sbjct: 485 ALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD 544 Query: 712 YEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPY 755 W T + E + + + D+ Sbjct: 545 IAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRL 604 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815 ++ + + + + + + + G +H L + + N++ Sbjct: 605 DVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQPVD-PNWVQEKLELGG-- 661 Query: 816 WPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------- 859 + ++ L IT +L+ P+ ++ D E+ I+ P Sbjct: 662 FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIR 721 Query: 860 ----------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE--------- 894 ++ G ID + + ++ +YK++ Sbjct: 722 QFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 781 Query: 895 HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 782 MQAHRYDLQYQLYTLALHR 800 >gi|294666234|ref|ZP_06731487.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604007|gb|EFF47405.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 728 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 99/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + + + + + A Y+E ++ +LDF +L++ ++LL+ + Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 IL+DE QDT+ IQ+ +R L + +F VGD+ Q+IY + GA Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V R + + L ++RS+A+IL + V + + G Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 QLW + + ++ + + AR + Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ VL R + + ++ Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 383 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469 + IKD +A R + ++ DD +F + +P + + ++ R +++E Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARASALSLWEAAM 443 Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 A + + I +L + +L R+ + Sbjct: 444 LCTQQNTLAARARNALATFLSLIGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 503 Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + LDE ++ R + + EL++ L + A V++MT Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VFLV +F Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVG+TRA +L++C + Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624 >gi|160881547|ref|YP_001560515.1| recombination helicase AddA [Clostridium phytofermentans ISDg] gi|251764520|sp|A9KTE6|ADDA_CLOPH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|160430213|gb|ABX43776.1| recombination helicase AddA [Clostridium phytofermentans ISDg] Length = 1377 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 130/836 (15%), Positives = 279/836 (33%), Gaps = 119/836 (14%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 + + + L + + + F F + T++ + + KE++K + Sbjct: 254 SDQEIIERL--LNSDAGSQHSYEEYQDAFSNITFA---RLSTKKWPDATEERKEEVKAIR 308 Query: 105 DEFIKIRDRFN--------------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150 KI + K+ + L L+L + +K++N ++DF Sbjct: 309 QMVKKILSDLSDDFFFQPMEDMLTDMRKVRRPMLVLLSLTHDFLERLDASKEENNLVDFS 368 Query: 151 DLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 D+ ++L V + ++ ++ I+IDE QD++ +Q ++ S+++ Sbjct: 369 DIEHFALNILVTKEDGNLVPTKVATEMSEQFVEIMIDEYQDSNYVQEYILSSISK----- 423 Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266 +F VGD KQSIY F A P+ + + + I+L +FRS Sbjct: 424 --VTRGCPNVFMVGDVKQSIYKFRMARPELFMEKYEQYSTE----EGLYRRIDLSKNFRS 477 Query: 267 TADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC-- 322 A++L ++ VF G+ ++ + + + S ++ Sbjct: 478 RAEVLDSINGVFEKIMTKAMGGIEYTKEVSLYPGAQFPEIGMDLDNTSFLFSDTKTELII 537 Query: 323 ---NPQQESWTSYFDSLP---------QESSASILARRIAYTISNMIGTDTIF------- 363 ++ S D L + S + A+ +A I ++ + F Sbjct: 538 LDLKEEEASIPDSMDRLDVMALEEDAIELSKRELEAKAVAMRIKQLVHGERGFSVTKRNG 597 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + Q +DI++L+R + I + + L +K ++ Sbjct: 598 EEQDLKRCQYRDIVILLRTMSGWS---ETFTEILKQEGIPAYSDTQTGYFQTLEVKTVLN 654 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFA------ 474 R + + D +L SP+ S + + + + + ++Y+ ++ A Sbjct: 655 YLRILDNPRQDAPLTAILYSPIVGLSAEQLSFLRVKPGKGAEKLSIYDAARECALNYLEI 714 Query: 475 ---------------------------------------NCGISKFQHVIKYIHELIHIA 495 K + +L A Sbjct: 715 QDEVTQPEETQPVYDSIIQADLMYEKSSAEKTVSMDKNLIETGEKLKRFFATYDKLREKA 774 Query: 496 QFCSPHDFFTLILGAKKG-RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 + H+ + G + + L+ + L E++SY L + I + Sbjct: 775 IYLPVHEIILEFFKETGYDLFVYAMPGGEQRRNNLNLLVQHALSFEESSYHGLFQFIRYI 834 Query: 555 E-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609 E + S N N VRIM++H +KGLE PVV L G Q + +K+ + Sbjct: 835 ERLLKFEIDYGEAGGLSENDNAVRIMSIHKSKGLEFPVVILAGMGKQFNTMDAREKIVLH 894 Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 P + ++K + + K++ E R+LYV +TRA ++LI+ +N Sbjct: 895 ADYGIGPECIDYQLRTKCPTLLKQVIKKNIVLDNLGEELRVLYVALTRAKEKLIMIGSAN 954 Query: 670 TSNE-----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724 +N+ ++ + + + + + ++ + + Sbjct: 955 DANDVFDKWRQDSTPGVTPLRFQTLAMAKDYFSFVGPAALYDSRIRVITLTPNDLLEDEY 1014 Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780 E++ IK +E L S + + + G+ + Q Sbjct: 1015 EKQTDIKNKQEELNPYNFLQSFEEESDEQSDEERSDEERSDGEQSDGEQSDGEQPR 1070 Score = 104 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 80/308 (25%), Gaps = 48/308 (15%) Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725 S+ ++ + + + + E + IK T S K + + Sbjct: 1059 SDGEQSDGEQPRKDLLTKLSFRYPYEHEAMLPIKTTVSELKKLSQQVDEELTETFTQVKD 1118 Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 +DE+ K + + P + + + RG + Sbjct: 1119 ELTKTWPQVDEELTEKYPQVEELIETSPPVKEESQMLIEPTIPKFLKEEKELRGTERGNL 1178 Query: 786 IHKLLQVIFTLPEHKRKNFIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843 HK+L++I + N S + ++R E+ + Sbjct: 1179 YHKILELIDFSDNKTKLNLREFVSQLANRGLIQEESISSINFERLSRFFESELYQRIQIA 1238 Query: 844 D----SYSEVSVSGKINCP----------------------------------------- 858 Y E I Sbjct: 1239 YQKGYLYREQPFVIGIPVREISTQKFVRTTQAQASSILSKNEDFSHANLCSCPNSQDYEN 1298 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918 ++I G ID + I + +YKT E + + Q+ YE+ L +K Sbjct: 1299 DDLVLIQGIIDVYFEEEDGIVLVDYKTDAVGELGEEELIRRYQEQIRYYERALNQLL-DK 1357 Query: 919 SLVCLLIY 926 ++ +IY Sbjct: 1358 TVKEKIIY 1365 >gi|291615722|ref|YP_003518464.1| UvrD [Pantoea ananatis LMG 20103] gi|291150752|gb|ADD75336.1| UvrD [Pantoea ananatis LMG 20103] Length = 723 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 99/580 (17%), Positives = 188/580 (32%), Gaps = 116/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ ++L + I + ++IL+DE QDT+ I Sbjct: 175 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFSNILVDEFQDTNNI 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + VGD+ QSIY + GA+ + + R + Sbjct: 232 QYAWIRMLAGD----------SGKVIIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 275 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST +IL + + + G +LW Sbjct: 276 --GADTIRLEQNYRSTNNILKSANALIANNNGRLGK---------------------ELW 312 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + S F+ L + R + I + Sbjct: 313 -------TDGSDGEPISVYCAFNELDES-------RFVVNRIKAWMENGNAL-------- 350 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R + ++ Sbjct: 351 --ADCAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALAYLRLMANR 404 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + + R + T+++ ++ A S Q Sbjct: 405 NDDAAFERVVNTPTRGVGDRTLDVVRQTAREKQMTLWQATRELLQSRALAGRAASALQRF 464 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 + + L H ++ + G + I+ L+E + T + Sbjct: 465 CELVDSLASETVDMPLHVQTDRVIKDSGLWIMYEQEKGEKGQARIENLEELVTATRQFSY 524 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 Q+ L L + L + + V++MT+H+AKGLE VF+V +F Sbjct: 525 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFP 584 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 585 SQMALDEGG----------------------------------RLEEERRLAYVGVTRAM 610 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 +L + K + + +++ Sbjct: 611 MKLTLTYAETRRLYGKEVYHRPSRFIGELPEACIEEVRLR 650 >gi|189009944|ref|ZP_02803819.2| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189404465|ref|ZP_02789656.2| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189003309|gb|EDU72295.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189365388|gb|EDU83804.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4501] Length = 1183 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 309 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 520 TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 637 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLT 688 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 790 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 909 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 910 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 969 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 970 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1026 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKS 1086 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123 >gi|110634338|ref|YP_674546.1| ATP-dependent DNA helicase Rep [Mesorhizobium sp. BNC1] gi|110285322|gb|ABG63381.1| ATP-dependent DNA helicase, Rep family [Chelativorans sp. BNC1] Length = 876 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 108/701 (15%), Positives = 205/701 (29%), Gaps = 146/701 (20%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L A Y++ K DF DL+++ + ++ + + + +IL+DE QDT+ Sbjct: 209 RALYAAYQQRLKTLNATDFGDLLLHPIRIFREHPD---VLREYHAKFKYILVDEYQDTNT 265 Query: 191 IQWEVIRSLTEDFFV------------------------------------GKNTHSSPR 214 Q+ +R L + ++ Sbjct: 266 AQYMWLRLLAQRPGSPGTGGLPAEGRARGHALGDVSQAHAAGGPGASPGQRPGGASANKV 325 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 + VGD+ QSIY + GAE +LR ++ ++I L ++RSTA IL Sbjct: 326 NICCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GATVIRLERNYRSTAHILGAA 377 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + + E G + + S + + + +D Sbjct: 378 SHLIAHNEGRLGKTLFTEH--------------------------SDPDAPRVKVHAAWD 411 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 S + AR + I + D+ +LVR Sbjct: 412 SEEE-------ARALGEEIEALQAKGHAL----------NDMAILVRASFQMREFEDRFV 454 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 L +S + I+D +A R + DDL+F ++ P E + Sbjct: 455 TL----GLSYRVIGGPRFYERQEIRDALAYFRVVAQGADDLAFERIVNVPKRGLGESAVR 510 Query: 455 KICT-QRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 +I R + + + + + +++++ + + I Sbjct: 511 QIHDVARMRGVPLLQAARDLVGTEELKPKPRASLRNLVESFERWQGLLDRTRHIELAETI 570 Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564 L + + E ++ L E + E L + LE + Sbjct: 571 LEESGYTDMWKNDRSAEAPGRLENLKELIRSMEEYES--------LRAFLEHVALVMDAE 622 Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 + V +MT+H+AKGLE VFL +F H+ Sbjct: 623 RDEELDAVSLMTLHSAKGLEFDTVFLPGWEEGLFPHQRSLD------------------- 663 Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684 +S EE RL YVG+TRA L I ++ ++ Sbjct: 664 -------------EGGRSGLEEERRLAYVGVTRAKKNLHI--WFTSNRRIHGLWQSTIPS 708 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + ++ V+ S + P R + + ++ Sbjct: 709 RFLDELPEKHVEVTDDGGSFGGYGRPIADRQPGRPNPYGSSRFDNMGEVFSNSYATPGWQ 768 Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785 KN S + + +G + Sbjct: 769 RAQKNRTEATARNWGSRSGHQVERIGYGEPDSGYGLGKGSV 809 >gi|312963948|ref|ZP_07778419.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] gi|311281983|gb|EFQ60593.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] Length = 727 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 114/641 (17%), Positives = 206/641 (32%), Gaps = 124/641 (19%) Query: 45 TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104 T A L +A + L+ F Q+ ++ + I + D + + Sbjct: 91 TFHGLAHRLLRAHWQEAG------LAQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144 Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162 FI + + + S L + + YE A + V+DF +L++ DL + Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACVRAGVIDFSELLLRALDLWRD 204 Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 + + HIL+DE QDT+ +Q+ +R L + +L VGD+ Sbjct: 205 NPG---LLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK----------GGDSLMVVGDD 251 Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 QSIY + GA+ + + + I L ++RSTA IL + + + Sbjct: 252 DQSIYGWRGAKIENIYQYSEDFP--------DAVTIRLEQNYRSTAGILKAANALIANNT 303 Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342 G +LW + + + F+ + Sbjct: 304 GRLGK---------------------ELW-------TDGGEGEAINLYAAFNEHDE---- 331 Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402 AR + TI + + T + DI +L R + ++ +I Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374 Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461 + IK+ MA R + + +D + ++ P E + I RH Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPARGIGEKTVEAIRDHARH 434 Query: 462 ETETVYE------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512 +++E + ++ I L H ++ Sbjct: 435 ADVSMWESMRLLIANKGLTGRAAGALGVFVELIENLAAKCADMPLHLMTQTVIEQSGLIA 494 Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570 + G ++ L+E ++ E L L + L + + Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARAFENTEEDEELTPLAAFLGHASLEAGDTQADEHED 554 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +++MT+H+AKGLE P VFLV +F HK + Sbjct: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA L++ Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVMTYAETRR 621 >gi|308389552|gb|ADO31872.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha710] Length = 671 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 113/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGDPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYQLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQTFMDMFGSYRAKAETSEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + + +++ R ++ EL + Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|330445114|ref|ZP_08308766.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489305|dbj|GAA03263.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1210 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 156/993 (15%), Positives = 310/993 (31%), Gaps = 165/993 (16%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFFLT 75 K LW + + + ++ + L AQ + A+ E L + Sbjct: 238 KTLWKEHFADLEALIANSDVNKRSYTKKSLPTWLAQVNEWANAATDSYELPDKLDK--FS 295 Query: 76 QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135 Q+ +K T + + + D +RD + + + L Sbjct: 296 QRVLIEK---TPKGEAPQHSVFVAIDDLIDNPATLRDPLLAHAI-ERCRTLLA------- 344 Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195 +AK L F+DL+ ++ D + KI + +IDE QDT +Q+ + Sbjct: 345 ---QAKAHKGWLSFDDLLTQLGAAIE-HDQDDLLASKIRSQYPVAMIDEFQDTDPLQYGI 400 Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255 ++ +D LF +GD KQ+IY+F GA+ ++ +R Q T Sbjct: 401 FSAVYKD--------HPECGLFMIGDPKQAIYAFRGADIFTYIQARRQVQDHYT------ 446 Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQV 314 L ++RSTAD++ V+ VF+ P + +D + + H + Sbjct: 447 ----LGTNWRSTADMIASVNSVFAHPNSPFIYDQDITFEPVGHSPKA----------PER 492 Query: 315 VSQHDSQCNPQQESWTSYFDS---LPQESSASILARRIAYTISNMIGTDT-------IFS 364 + + W D + + S +A+ A I +++ Sbjct: 493 SWWLNGEKQHALTFWLQDSDEGKPVTKGEYESTMAQATAAQIQHILERSQQGQGYFLDKE 552 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI-SVVGNDRFILTDHLAIKDLMA 423 G+ + ++A DI VLVR ++ L R I SV ++R + D+ Sbjct: 553 GGEAKAVKAGDIAVLVRTGREG----KLVREALARQGIASVYLSNRDSVFSTAEAADVQR 608 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483 L + +L+ EDD + L S LF + ++ + +E E +++ + Sbjct: 609 LLQAVLTPEDDRALRAALASGLFALTAIELDTLNNDENEWEIAVNSFKQYRQQWQK--RG 666 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 V+ + ++ +L + G ++ + E L + + Sbjct: 667 VMPMLRSVMAKNN------IAERLLVEEGGERRLTDLL------HIGELLQEASQTLDSD 714 Query: 544 YSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 Y+ L+ L + + + N V+I+T+H +KGLE +VF+ S Sbjct: 715 YALLRWLAENVAEPNGNSDEQILRLESERNLVQIVTIHKSKGLEYDLVFMPFVCSF---- 770 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 +D+ + +K +++V E RL+YV +TRA Sbjct: 771 -RAVDNKGEVKYHDEAENVTILDITKHEDSVVKADK-----ERLAEDLRLIYVALTRAVY 824 Query: 661 QLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK------------------IKLT 701 + K + N E I Sbjct: 825 GCFVGMAPVRNGRSTKEPTGLHKSAMGYLIQNGEECGVAALELALAKLSETQPTITIAEP 884 Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIK---------QLMDEQKIPKKLFSPIKNDIN 752 + +D+W A + +H ER+ Q DI+ Sbjct: 885 PVLPEDKWEALDEQSHALTRREFERQIERNWWMTSYSNLVKQGHQAHHDSSLDLPGFDID 944 Query: 753 EPYIL------NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFI 805 + S S+ + + G +H + + I P + Sbjct: 945 SVQTDALQNDGSESPDVEVELEPEYSIYTFPRGARPGTFLHTVFEEIEFTRPVDSPETVA 1004 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859 + + L I +L + + +E+ I + Sbjct: 1005 KLTELLELEHYELAWLPVLQQLIQDVLNCALDGEQLLLAEKTPQQRLTEMEFLLPIEMLQ 1064 Query: 860 KDII-------------------------ISGRIDQISISQQNIFIFEYKTHHHVPQ--- 891 ++ + G ID + Q ++ ++K+++ Sbjct: 1065 SPLLNKVIAKHDSISAKAGELGFSSVSGMLKGFIDLVFEHQGKYYVLDWKSNYLGDDPQV 1124 Query: 892 -EIEHIPY-----THIAQLSIYEKILKDSYPNK 918 E + + Q IY L+ ++ Sbjct: 1125 YRGEQLVEAMRDHRYDLQYQIYALALQRFLRSR 1157 >gi|15803339|ref|NP_289372.1| exonuclease V subunit beta [Escherichia coli O157:H7 EDL933] gi|15832931|ref|NP_311704.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. Sakai] gi|168751034|ref|ZP_02776056.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|168758203|ref|ZP_02783210.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168766791|ref|ZP_02791798.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168777659|ref|ZP_02802666.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168788082|ref|ZP_02813089.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC869] gi|168801682|ref|ZP_02826689.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC508] gi|195936421|ref|ZP_03081803.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208808569|ref|ZP_03250906.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208814260|ref|ZP_03255589.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208818406|ref|ZP_03258726.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209398198|ref|YP_002272283.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|254794758|ref|YP_003079595.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. TW14359] gi|261226118|ref|ZP_05940399.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261256626|ref|ZP_05949159.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli O157:H7 str. FRIK966] gi|12517302|gb|AAG57931.1|AE005510_3 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Escherichia coli O157:H7 str. EDL933] gi|13363149|dbj|BAB37100.1| DNA helicase RecB [Escherichia coli O157:H7 str. Sakai] gi|187767152|gb|EDU30996.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188014874|gb|EDU52996.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189354956|gb|EDU73375.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189363675|gb|EDU82094.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189372121|gb|EDU90537.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189376191|gb|EDU94607.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208728370|gb|EDZ77971.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208735537|gb|EDZ84224.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208738529|gb|EDZ86211.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209159598|gb|ACI37031.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209761120|gb|ACI78872.1| DNA helicase RecB [Escherichia coli] gi|209761122|gb|ACI78873.1| DNA helicase RecB [Escherichia coli] gi|209761126|gb|ACI78875.1| DNA helicase RecB [Escherichia coli] gi|254594158|gb|ACT73519.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli O157:H7 str. TW14359] gi|320640467|gb|EFX10006.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. G5101] Length = 1180 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|27381672|ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] gi|27354841|dbj|BAC51826.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] Length = 872 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 182/583 (31%), Gaps = 144/583 (24%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L Y+E K DF DL++ + ++ I + Q +IL+DE QDT++ Q Sbjct: 220 LYTSYQERLKILNAADFGDLLLENIRIFREHPD---ILRQYQQRFKYILVDEYQDTNVAQ 276 Query: 193 WEVIRSLTE---------------------------------DFFVGKNTHSSP-RTLFA 218 + +R L++ + G T + + + Sbjct: 277 YLWLRLLSQAPSPKVVIPGRVEDANPESRDSGFDAPHRPGMTEQTAGTPTATPHVKNICC 336 Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278 VGD+ QSIY + GAE +LR + +I L ++RST IL + Sbjct: 337 VGDDDQSIYGWRGAEVDNILRFEHDFP--------GAKVIRLERNYRSTGHILAAASHLI 388 Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 + E G + + ++ + T +DS + Sbjct: 389 AHNEGRLGKTL----------------------------RTEDQDGEKVTVTGSWDSEEE 420 Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 AR I I + + +I +LVR L Sbjct: 421 -------ARGIGEEIEQIQRQGE----------KLNEIAILVRASYQMREFEDRFVTL-- 461 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457 + + I+D +A R I S DDL+F ++ +P + + + Sbjct: 462 --GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNTPKRGLGDATVQMLHD 519 Query: 458 TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 R ++E + + + ++ + + D ++L Sbjct: 520 HARKRRIPLFEAARAVVETDELKPKARGSLRDLVAQFDRWRAQREVTAHTDLAQIVLDES 579 Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568 + + + + L E + E L LE + R A Sbjct: 580 GYTEMWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDRDGGAE 631 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V +MT+H+AKGLE VFL +F + Sbjct: 632 EDAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLD----------------------- 668 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 ++ EE RL +VG+TRA + +I +N Sbjct: 669 ---------EQGRAGLEEERRLGHVGITRARRRAMIYFATNRR 702 >gi|294637961|ref|ZP_06716228.1| DNA helicase II [Edwardsiella tarda ATCC 23685] gi|291088893|gb|EFE21454.1| DNA helicase II [Edwardsiella tarda ATCC 23685] Length = 720 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 114/694 (16%), Positives = 217/694 (31%), Gaps = 132/694 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L Q S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLAVEQCSPFSIMAVTFTNKAAAEMRHRIEALIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + LK +K + + R Sbjct: 90 FHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + Y+EA + ++DF +L++ ++L + I Sbjct: 150 KDDGLRPQHIESYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLHKP---QI 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 ++IL+DE QDT+ IQ+ IR L D + VGD+ QSIY + Sbjct: 207 LEHYRARFSNILVDEFQDTNRIQYAWIRMLAGD----------SGRVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + I L ++RS+ +IL + + + G Sbjct: 257 RGAQVENIQKFLDDFP--------GAQTIRLEQNYRSSGNILRAANALIENNDGRLGKK- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TEDGEGEPISLYCAFNELDE-------ARFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I K+ +L R + ++ + Sbjct: 334 VNRIKAWQDNGGAL----------KECAILYRSNAQSRVLEEAL----LQAAMPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD +A R + ++ DD +F ++ +P+ + + + R T+++ Sbjct: 380 MRFFERQEIKDALAYLRLLANRNDDAAFERVVNTPVRGIGDRTLDVVRQTARDRQLTLWQ 439 Query: 469 YIQKFANC------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + + ++ I L + H ++ RQ + G Sbjct: 440 ATRALLQEAVFPGRAANALRRFLELIDALEQQSLDLPLHVQTDRVIRDSGLRQMYEQEKG 499 Query: 523 N---EVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 I+ L+E + T + ++ L L + L + A + V++MT+ Sbjct: 500 EKGQTRIENLEELVTATRQFSYEDDDEDLPPLQAFLSHAALESGEGQADAYQDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VF+V +F + Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L + + Sbjct: 591 -----RLEEERRLAYVGVTRAMRKLTLTYAESRR 619 >gi|320667103|gb|EFX34066.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. LSU-61] Length = 1180 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 123/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SG--------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYKT 885 + + ++ G ID + + ++ +YK+ Sbjct: 1024 YLAISEPLIASQLDALIRQFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|50843216|ref|YP_056443.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|50840818|gb|AAT83485.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|315106181|gb|EFT78157.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA1] Length = 810 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 100/633 (15%), Positives = 194/633 (30%), Gaps = 128/633 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + Y+ + VLDF+DLI+ T +L+K +R + + H+L+DE QD Sbjct: 204 RINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPE---VRERYRRRFRHVLVDEYQD 260 Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244 T+ Q++ IR L D P L VGD QSIY+F GA + ++ ++ Sbjct: 261 TNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320 Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 I L ++RST ILT + + + N + Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356 Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 LW Q + + + A +A I ++ Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 + V R + + + + ++D ++ Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477 R I + DD+S +L +P + + +E +++ A Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDSLATRS 504 Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533 +++ + + + I + + + + IL + + + ++ L E + Sbjct: 505 VNQIRAFVSLMDGHIAMVEQGKRADEIASSILKESGYITELENSKDPQDETRLENLIELV 564 Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E + SL + ++ + + ++ V Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +MT+HTAKGLE VF+ VF H Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + E RL YVG+TRA QL + + S + ++ + + + Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726 ++I + S Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742 >gi|289670782|ref|ZP_06491857.1| DNA-dependent helicase II [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 728 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 98/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + + + + + A Y+E ++ +LDF +L++ ++LL+ + Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 IL+DE QDT+ IQ+ +R L + +F VGD+ Q+IY + GA Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V R + + L ++RS+A+IL + V + + G Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 QLW + + ++ + + AR + Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVEG 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ VL R + + ++ Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNVQSRALEEAL----ISEQLPYRVYGGMRF 383 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469 + IKD +A R + ++ DD +F + +P + + ++ R +++E Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 443 Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 A + + + +L + +L R+ + Sbjct: 444 LCTQQNTLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 503 Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + LDE ++ R + + EL++ L + A V++MT Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VFLV +F Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVG+TRA +L++C + Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624 >gi|159045024|ref|YP_001533818.1| DNA helicase II [Dinoroseobacter shibae DFL 12] gi|157912784|gb|ABV94217.1| DNA helicase II [Dinoroseobacter shibae DFL 12] Length = 807 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 115/649 (17%), Positives = 196/649 (30%), Gaps = 111/649 (17%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+E K DF DL+++ + +K + + + + +IL+DE QDT++ Sbjct: 206 ELYAAYQERLKTLNATDFGDLLLHVVGIFQKHED---VLAQYQRWFRYILVDEYQDTNVA 262 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 263 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAL--- 309 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RST IL V S + G +LW Sbjct: 310 -----VIRLEQNYRSTPHILAAASGVISGNKGRLGK---------------------ELW 343 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++D + AR I I +M R Sbjct: 344 -------TDAQEGEKVRLIGHWDGDEE-------ARWIGEEIESMQNG-----TRGMRPF 384 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I +LVR + + + I+D MA R + S Sbjct: 385 ALNEIAILVRASHQMRAFEDRF----LTIGLPYKVIGGPRFYERMEIRDAMAYFRVVTSP 440 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISKFQHV 484 EDDL+F ++ +P + KI E + + G ++ + + Sbjct: 441 EDDLAFERIVNTPKRGLGDKAQAKIQAAARANGVPLKEGARILLAAKGLGGKGAAELRLL 500 Query: 485 IKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540 I + A+ + + +IL + + E ++ L E + E Sbjct: 501 IDGLDRWSAAARDGANHVELAQVILDESGYTTHWQNDKTPEAPGRLENLKELVKALEGFE 560 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L LE + +V IMT+H AKGLE P VFL +F Sbjct: 561 N--------LQGFLEHVSLVMDNDKGDAGPQVSIMTLHAAKGLEFPAVFLPGWEDGIFPS 612 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + +E RL YVG+TRA + Sbjct: 613 QRSIDDQTGKVEIG---------------------------READEERRLAYVGITRAEE 645 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 I SN + + + + V Sbjct: 646 LCTISFASNRRVFGRWQDQMPSRFIDELPEAHVEVLTPPGLYGGGYGAAAPGAMPDGVFA 705 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769 + LE + + + + ++P ID Sbjct: 706 GSQLETKAAEANVYNSPGWRRMQARAGARGTSQPREARNMVIDATAVPA 754 >gi|323188764|gb|EFZ74049.1| exodeoxyribonuclease V, beta subunit [Escherichia coli RN587/1] Length = 1168 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 131/971 (13%), Positives = 296/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 203 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 260 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + ++ ++ + L Sbjct: 261 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEVIEQLLAEPLSIRDLVITRA 319 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 320 LAEIRETVTREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 378 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 379 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 430 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS + ++ V+K+FS ++A E ++ Sbjct: 431 ----------LDTNWRSASGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 474 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 475 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 530 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 531 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 587 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 588 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 639 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 640 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 693 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 694 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 753 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 754 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 800 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 801 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTTQI 860 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 861 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 920 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 921 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 977 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L P+ ++ D E+ I+ P Sbjct: 978 LTEWITTVLLAPLNETGISLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1037 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1038 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1097 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1098 QYQLYTLALHR 1108 >gi|119387000|ref|YP_918055.1| UvrD/REP helicase [Paracoccus denitrificans PD1222] gi|119377595|gb|ABL72359.1| ATP-dependent DNA helicase, Rep family [Paracoccus denitrificans PD1222] Length = 799 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 113/647 (17%), Positives = 188/647 (29%), Gaps = 119/647 (18%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ + +DF DL+++ +L + + +IL+DE QDT++ Sbjct: 204 RLYAAYQRRLLELNAVDFGDLLMHCVNLFQAHPD---VLRTWQDRFRYILVDEYQDTNVA 260 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + R + VGD+ QSIY + GAE +LR + Sbjct: 261 QYMWLRLLAQ----------AHRNICCVGDDDQSIYGWRGAEVGNILRFESDFP------ 304 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RST IL + + + G + LW Sbjct: 305 --GAQVIRLEQNYRSTPHILAAASGLIAANKGRLGKT---------------------LW 341 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + + W S AR I I G + Sbjct: 342 ---TEAEEGERVRLIGHWDS-----------EAEARWIGEEIEAFQGGHRHSIGRR---- 383 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 DI +LVR + + I+D MA R +S Sbjct: 384 SLNDIAILVRASHQMRAFEDRF----MTIGLPYRVIGGPRFYERQEIRDAMAYFRLAVSP 439 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHV 484 DDL+F ++ P + + KI R ++ E G + Sbjct: 440 TDDLAFERIVNVPKRGLGDKAVQKIQVEARERGLSLLEGAASAVASGALGGKGAGALRQF 499 Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539 + + A + + IL + + + +D L E + Sbjct: 500 TEAMGRWHADALDSRMNHVELAERILDESGYTAMWQNDKSPDAPGRLDNLKELIKALEEF 559 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E L LE + EV IMT+H AKGLE P+VFL +F Sbjct: 560 EN--------LQGFLEHVALVMDNDRGEQSEEVSIMTLHAAKGLEYPIVFLPGWEDGLFP 611 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + EE RL YVG+TR Sbjct: 612 SQRS--------------------------------MDESGMKGLEEERRLAYVGITRGE 639 Query: 660 DQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716 + + I N + S + D + + + + A Sbjct: 640 ELVTISFAGNRRMYGQWQSSLPSRFIDELPEDHVEVLTPPGLYGGGYGAAVQPFAQSVMH 699 Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763 + K++ + + I+ S D Sbjct: 700 ERAARADVYNSPGWKRMQERSAQRAQPVHRTPVVIDAEPAARFSVGD 746 >gi|254446951|ref|ZP_05060418.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015] gi|198263090|gb|EDY87368.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015] Length = 1215 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 119/894 (13%), Positives = 276/894 (30%), Gaps = 124/894 (13%) Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161 + + + F T T+A A ++ K++ ++ F+D+I + L Sbjct: 312 ELFESIPALEALFATLDENADTIALHA-AHWVAERIATHKQRRSLIGFDDMISQLAEALD 370 Query: 162 KRDVSAWIRY-KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 D S +I Q+ L+DE QDT QW + + L + L +G Sbjct: 371 TPDASDTALAQRIRQQYPIALVDEFQDTDPKQWRIFQRLYPEIET------RQNALVMIG 424 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D KQ+IY F GA+ L +R LP ++RS+ ++ V+ VF+ Sbjct: 425 DPKQAIYQFRGADIYTYLDARRSID--------DTRRYTLPCNYRSSEPMVAAVNHVFNQ 476 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + I + + ++ + + + ++ + Sbjct: 477 GNQHKS-GAFMEADIPFEAVQANG------RKERFVVMEKEHCALTLWYRDSDVAVGKNQ 529 Query: 341 SASILARRIAYTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 A A I ++ I G+ + DI +LVR + ++ Sbjct: 530 YLQQSAADTASEIVRLLNLARDRRAGFINEAGQFTALAPSDIAILVRSGSEAQVMRDALA 589 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + S +++ + D +D++ R +D L + + D+ Sbjct: 590 ERQLR---SAYLSNKESVFDSPEARDVLHWLRACHEPRNDRHMRAALGTITLDLPWADLD 646 Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 + + + + E + Q ++ Sbjct: 647 ALNHD------------------EASWNRRYEQFAEYHQLWQRSGVLAVIYHLVWDFHLA 688 Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPPTIKRAHSANHN 570 + + I L E L L+ L + + ++ Sbjct: 689 ARQNAERSLSNILQLAELLQSASGQVDGEAGLLRWLEEHITEERDASSDEQVLRLESDDE 748 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 ++I+T+H +KGLE P+VF+ + ++ + ++ G ++ + Sbjct: 749 LIKIVTLHKSKGLEYPLVFMPFCATFRPANAKD----FPQAYHNGEGQLQLALSAEEIVS 804 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII------CKHSNTSNEKKSNQRTWYDM 684 + ++ + E RLLYVGMTR L + ++ S +S ++ Sbjct: 805 DSTTALEQCDRERLAEDLRLLYVGMTRPRHALWLGLAPTTLGRAHKSKIGQSVWGHLLNL 864 Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH---------HPENTPLEREETIKQLMD 735 D + IK + + ++ST H + TPL + ++ Sbjct: 865 PADDIDKKTFQEVIKAPFQALAEGAPSVQFSTPELNSEPYLGHLDATPLGQPRECQRAQP 924 Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGK----------TNLESLLSDNQTFNRGLI 785 + + ++ + + + E L + G Sbjct: 925 PRWWMASYSALLRGADPIAETASGFDERLADEGERRKASTELPSPEGLHPFPRGAMPGDF 984 Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLW----PAKEYKNLLLSITRLLENPM----- 836 +H+ L+++ + + + + ++ L ++ +++ + Sbjct: 985 LHRQLELMGEAHFERAEQRLAEFKSELLPKLQLRQWEHWQDRLPQALLGIVQQALPLPDN 1044 Query: 837 ----MTTAMSCDSYSEVSV--------SGKINCPKK-----------DIIISGRIDQISI 873 + ++E+ S I+ + ++ G ID + Sbjct: 1045 QRVALADLKPAQYHTEMEFHFAAHGCRSTDIDRLIGHDPSGLKPQSLNGLLKGFIDLVFE 1104 Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918 + ++ +YK+++ P + + + Q ++Y L + Sbjct: 1105 HEGRYYVLDYKSNYLGPDDSAYTQDAMAESVREHRYDLQYALYSLALHRLLKQR 1158 >gi|300703480|ref|YP_003745082.1| DNA helicase II [Ralstonia solanacearum CFBP2957] gi|299071143|emb|CBJ42456.1| DNA helicase II [Ralstonia solanacearum CFBP2957] Length = 791 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 120/839 (14%), Positives = 233/839 (27%), Gaps = 163/839 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W + +VS + + + + Sbjct: 28 GAGSGKTRVLTTRIAWLIQSSRVSPSGVLAVTFTNKAAKEMTARLSAMLPINTRAMWIGT 87 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110 F L + L + + + + +K LK Q Sbjct: 88 FHGLCNRLLRAHYRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQYFINGA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ + L A Y+ ++ V+DF +L++ +LL+ D IR Sbjct: 148 KEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFAELLLRCYELLRYNDA---IR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 + HIL+DE QDT+ +Q+ ++ L G P +FAVGD+ QSIY+F Sbjct: 205 AHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEPGVA----PNAIFAVGDDDQSIYAFR 260 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA ++ +R + I+L ++RS +IL + + + G + Sbjct: 261 GANVGNMVDFEREFRVE--------HRIKLEQNYRSHGNILDTANHLIAHNTRRLGKNLR 312 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V++++ + A I Sbjct: 313 TD---------AGLGEPVRVYQSATDGQE--------------------------AGWIV 337 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I I + T +I +L R + +I I Sbjct: 338 DEIRERIASGTA----------RSEIAILYRSNAQSRVIEHSL----FSVGIPYKVYGGL 383 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469 + IK +A + + + ++D +F ++ P + + R ++ Sbjct: 384 RFFERAEIKHALAYLQLLENVDNDAAFGRVVNFPARGVGARSLELLQDAARLYGASLAAS 443 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528 + +K ++ I ++ + + + ++ A + G + I+ Sbjct: 444 VPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGLDRIEN 503 Query: 529 LDEFLNFTLRNEQNS---------------------------------------YSSLQE 549 L E + + Sbjct: 504 LQELVTAAQAFVAEEGYGADAIATALPVRHDAMLRIEGGETDGDVVAELVAGEAPMEMTP 563 Query: 550 LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608 L++ L A + V++MTVH AKGLE VVF+ +F H++ Sbjct: 564 LVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEGLFPHENSL---- 619 Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC--- 665 EE RL+YV +TRA ++L + Sbjct: 620 ------------------------------QDTDGLEEERRLMYVAITRARERLYLSFAQ 649 Query: 666 -----KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 + + + D +W Sbjct: 650 SRVLHGQIRYHIRSRFFDELPEATLKWLTPQHAGYSPTRRAQGAQGDNAWGRDWFKRPER 709 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 MD K + + S T LE +D + Sbjct: 710 GDDEAYTGRPTGGMDTGKNYADAKRAAETGFRVGQSVFHSKFGEGVITTLEGEGTDARA 768 >gi|281179845|dbj|BAI56175.1| exonuclease V beta subunit [Escherichia coli SE15] Length = 1180 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGEMQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDVAGLRTCIEALCDDDIAWQTAQI 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 933 SVVEVPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L P+ ++ D E+ I+ P Sbjct: 990 LTEWITAVLLAPLNETGISLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|288927884|ref|ZP_06421731.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330718|gb|EFC69302.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 1075 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 135/844 (15%), Positives = 275/844 (32%), Gaps = 93/844 (11%) Query: 98 EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 EKL+K Q + + K+ L L L + E +++ L+ +T Sbjct: 318 EKLRKEQAKL------LKSAKLTLRHLDQLRLLDKIETQVRELNEQSNRF----LLSDTQ 367 Query: 158 DLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL S +I KI ++ HI+IDE QDTS +QW + L ++ + S Sbjct: 368 TLLHALIHDSDSPFIFEKIGTQLEHIMIDEFQDTSTVQWANFKVLLQECMSHNQSQS--- 424 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 VGD KQSIY + + + + ++ + F I + ++RS +I+ Sbjct: 425 --LIVGDVKQSIYRWRSGDWRLLNEIEKQF----AGSPHAFKIERMTTNYRSERNIVDFN 478 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 + F + + + + ++ QL Sbjct: 479 NAFFEAACAIEQRELEGKSPTGAQQMQVAYQDVKQLVPTSKEPK----------GRVEVC 528 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 L +E+ + ++ +TI ++ +AKD+ +LVR LI Sbjct: 529 LLDKENCEQRMLAKVCHTIKTLLEQG----------ARAKDVAILVRNNNSIALIAGYMM 578 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 + + +V ++ F L +A++ +M R + + D L + + + + I Sbjct: 579 VHLPE--VRLVSDEGFKLQASIAVQIIMGALRVLANPADRLLQANLATTYQTHILGNAIG 636 Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 + + + KF N + + Sbjct: 637 DREMLKRDADVASFLPNKFWNNH---------------QQLMAMPIFNIVEEV------Y 675 Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574 Q F +E + F + + ++ + L +I E E N VR+ Sbjct: 676 QAFQLERLSEQSAYICTFYDRLNKFLVDNSADLNAVIDEWENDMKDRAIQSDE-LNGVRL 734 Query: 575 MTVHTAKGLESPVVFLVDTGSQV-FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 +T+H +KGLE + Q+ + + P N P +P+ + + ++ Sbjct: 735 LTIHKSKGLEFAHTIVPFCDWQLERTGGTLWCQPDEPPFNALPLVPVDLYPKQLMGSVYE 794 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 H T + LLYV TRA L + + + + + + + Sbjct: 795 KDYLHEHLQTMVDNMNLLYVAFTRAGRNLFVMGEKDKAGSRSAVIGQCIEQLMGMLPG-- 852 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 +++ E+ E + IP +K ++ Sbjct: 853 --------STLETTAEEDLEFKYGTLSIDTAEEKAKSTSDNVFNTIPSPFTFDVKVYESK 904 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813 L S + + N G ++H + I TL N + Sbjct: 905 ALFL-QSNKSSDFIGGEDDNAQQNNYIKLGRVLHAVFAQIRTL--ADVPNVLRQLEQDGV 961 Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCPKKDIIISGRIDQI 871 + L+ + + + + S +E S+ P + +++ R D++ Sbjct: 962 IYDSNLTKEKLIEMLNKRFADKRVKEWFSDGWQLFNECSILSV--DPVTNAVVTHRPDRV 1019 Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931 + + + + ++K H AQ++ Y +L+ K + L YV K Sbjct: 1020 ITNGEEMRVIDFKFGKP--------KEEHHAQVASYMALLETM-GYKRVSGYLWYVYSNK 1070 Query: 932 VFII 935 + + Sbjct: 1071 IEEV 1074 >gi|117625073|ref|YP_854061.1| exonuclease V subunit beta [Escherichia coli APEC O1] gi|115514197|gb|ABJ02272.1| exodeoxyribonuclease V beta chain [Escherichia coli APEC O1] Length = 1180 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69 +E+ + + V + + + + S E+ S Sbjct: 215 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272 Query: 70 SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129 + T + +++ K + + + D+ + L Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331 Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 + K++ L F+D++ + L+ + + I +IDE QDT Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390 Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249 Q+ + R + H L +GD KQ+IY+F GA+ ++ + T Sbjct: 391 PQQYRIFRRIW--------HHQPEIALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442 Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309 L ++RS ++ V+K+FS ++A E ++ Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486 Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364 + + P + W +S S +A+ A I + + + + Sbjct: 487 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 542 Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424 R ++A DI VLVR R++ + L+ SV ++R + + L ++++ L Sbjct: 543 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599 Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484 + +++ E + + L + + + DI + E+ ++ + Sbjct: 600 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541 + + + S + +L G ++ + E L L +E Sbjct: 652 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705 Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 L + I E + + + ++ + V+I+T+H +KGLE P+V+L + + Sbjct: 706 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 ++ N + + + E RLLYV +TR+ Sbjct: 766 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812 Query: 662 --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717 L + +KK + + E L I W T Sbjct: 813 CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTAQI 872 Query: 718 ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763 + E + + + D+ ++ + + Sbjct: 873 GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932 Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823 + + + + + G +H L + + N++ + + Sbjct: 933 SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWELV 989 Query: 824 LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859 L IT +L+ P+ + D E+ I+ P Sbjct: 990 LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049 Query: 860 --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902 ++ G ID + + ++ +YK++ + + Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109 Query: 903 QLSIYEKILKD 913 Q +Y L Sbjct: 1110 QYQLYTLALHR 1120 >gi|75676545|ref|YP_318966.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255] gi|74421415|gb|ABA05614.1| ATP-dependent DNA helicase, Rep family [Nitrobacter winogradskyi Nb-255] Length = 816 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 100/562 (17%), Positives = 176/562 (31%), Gaps = 123/562 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L A Y+ K DF DL++ L ++ + + IL+DE QDT++ Q Sbjct: 204 LYAAYQARLKILNAADFGDLLLENIRLFREHPD---VLRQYQNRFKFILVDEYQDTNVAQ 260 Query: 193 WEVIRSLTEDFFVGKNTHS-------------SPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 + +R L++ R + VGD+ QSIY + GAE +LR Sbjct: 261 YLWLRLLSQAPPSSHALFPAPVAAEGPDPRTARSRNICCVGDDDQSIYGWRGAEVDNILR 320 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 +I L ++RST IL + + E+ G + Sbjct: 321 FDHDFP--------GAKVIRLERNYRSTGHILAAASHLIAHNEDRLGKTL---------- 362 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + ++ + T +DS + AR I I + Sbjct: 363 ------------------RTEDVDGEKVTVTGSWDSEEE-------ARAIGEEIEQLQRA 397 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + +I +LVR L + + I+ Sbjct: 398 GE----------KLNEIAILVRASFQMREFEDRFLTL----GLPYRVIGGPRFYERAEIR 443 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------K 472 D +A R I S DDL+F ++ P + + + R + E + + Sbjct: 444 DALAYLRLINSPADDLAFERIVNVPKRGLGDATVKMLHEIARKRQIPLSEAARAVVETDE 503 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529 + +++ + + ++L + + + + L Sbjct: 504 LKPKARGSLRALLESFDRWRIQREAMRHTELAEIVLDESGYTEMWQKDRSADAAGRLENL 563 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 E + E L LE + R A+ + V +MT+H+AKGLE VF Sbjct: 564 KELIRSMDEFEN--------LQGFLEHISLVMDRDGGADEDAVSVMTLHSAKGLEFDTVF 615 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L +F H+ + +S EE R Sbjct: 616 LPGWEEGLFPHQR--------------------------------ALDEQGRSGLEEERR 643 Query: 650 LLYVGMTRASDQLIICKHSNTS 671 L +VG+TRA + + +N Sbjct: 644 LAHVGLTRARRRAKLYFATNRR 665 >gi|123443510|ref|YP_001007483.1| exonuclease V subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090471|emb|CAL13339.1| exodeoxyribonuclease V beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1209 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 126/991 (12%), Positives = 297/991 (29%), Gaps = 160/991 (16%) Query: 10 NESYELIYKDLWPLPYFQVSDINKYVSL--SMETGNPTILKK--AQTLQQASQTQCIEER 65 +E+ ++ + + ++ +G+ + A+ L + Sbjct: 216 DETILSRHQQIVVQIEAVKAQWRAAAPELEALISGSGVDKRSYSARYLPGWLEKVGSWAE 275 Query: 66 FSLLSSFFLTQKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 + +++++ T++ D+ + + ++ + +RD Sbjct: 276 QETGDYQLPKELEKFRQSVLFEKTKKGEAPQHDVFHAIDRIFEQPLTLRDLI-------- 327 Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182 + ++ K++ L F+DL+ + L++ + I +I Sbjct: 328 ---LARAISEIRISVQQEKRQRAELGFDDLLSKLDAALQQ-AGGELLAQSIRTRYPVAMI 383 Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242 DE QDT Q+ + +L L +GD KQ+IY+F GA+ +R + Sbjct: 384 DEFQDTDPQQYRIFHTLYGG--------QEECGLLLIGDPKQAIYAFRGADIFTYIRARS 435 Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302 T L ++RS+ ++ V+++FS+ + + + Sbjct: 436 EVSAHYT----------LETNWRSSFPMVQSVNRLFSLVDVPFLFQQIPFINVAPAQKNK 485 Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-- 360 + + + P W + + ++AR+ A I + + Sbjct: 486 Q----------LSFEIKGKKQPAMSFWLQPGEGVGVSEYQQLMARQCAAQIRDWLTAGQK 535 Query: 361 ---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 + + R +QA DI +LVR R + L+ L SV ++R + D Sbjct: 536 GLAQLVTATSSRPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAE 592 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477 KDL+ L + +L+ E + + + + + + ++ + + + + Sbjct: 593 AKDLLWLLQAVLAPEQERALRSAMATGILGLDARMLDELNHDERAWDALVDEFDGYRQHW 652 Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT- 536 + V+ + E++ +L + G ++ L E L Sbjct: 653 QR--RGVLPVLREIMAQRH------LAENLLATQGGERRLTDLL------HLGELLQEAA 698 Query: 537 --LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594 L +E L + I++ + ++ + V+++T+H +KGLE P+V+L G Sbjct: 699 SQLDSEHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVG 758 Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 + + N + ++ E RLLYV Sbjct: 759 NFRQQQDVLYHDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVA 805 Query: 655 MTRASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 +TRA +I E + +V D + KL + Sbjct: 806 LTRAVYHCSIGIAPLIKGGRKKQGESDMHLSALGYLVQQGQAGDAQYLADKLAGLAALAD 865 Query: 709 W-----IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI---------------- 747 A + + E + Q + Sbjct: 866 GEISVSQAGQLDETPWQPQQDELPALAARQFSRQIHDFWRVTSYSGLQQHGSSKSVASQA 925 Query: 748 ----KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803 ++ + T + + + G +H L + + ++ Sbjct: 926 LSVLLQELLPRLDTDAVGEQTLITEPQLTPHTFPRGAAPGTFLHDLFEPLDFSQPIEQGW 985 Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINC 857 + + + L +T +++ P+ + +E+ I+ Sbjct: 986 LTEQL---QQQGFGEQWSSMLYQWLTDIVQTPLNETGVTLAQLTPQSKQAELQFYLPIDA 1042 Query: 858 PKKDI--------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQ 891 + ++ G ID + + ++ +YK++ Sbjct: 1043 LLQARELDTLIKRYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWRGKYYLLDYKSNWLGED 1102 Query: 892 EIEHIPY---------THIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1103 SSAYTHDAMAQAMAEHRYDLQYQLYTLALHR 1133 >gi|227114721|ref|ZP_03828377.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 720 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 116/728 (15%), Positives = 225/728 (30%), Gaps = 144/728 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIDHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D +++L+ + + Sbjct: 90 FHGLAHRLL------RAHHMDANLPQDFQILDSEDQLRLLKRLIRALNLDEKQWPPRQAM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WFINGKKDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + +IL+DE QDT+ IQ+ IR L D + VGD+ Sbjct: 204 PH---VLNHYRERFTNILVDEFQDTNRIQYAWIRMLAGD----------SAKVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + + I L ++RST++IL + + + Sbjct: 251 QSIYGWRGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + LW + S F+ L + Sbjct: 303 RLGKN---------------------LW-------TDGVEGEPISLYCAFNELDE----- 329 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 AR + I KD +L R + ++ + Sbjct: 330 --ARYVVNRIKTWHENGGAL----------KDNAILYRSNAQSRVLEEAL----LQQSMP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 + IKD ++ R I ++ DD +F ++ +P + + + R Sbjct: 374 YRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433 Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + + Q I+ I L + H + Sbjct: 434 QLTLWQSTRALLQEKALAGRAAASLQRFIELIDALAYETSELPLHIQTDRAIKDSGLWSM 493 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G + ++ L+E + T + Q L L + L + AN + Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691 EE RL YVG+TRA ++L I + K V + Sbjct: 591 -----------RLEEERRLAYVGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEE 639 Query: 692 DERVKKIK 699 +++ Sbjct: 640 CVEEVRLR 647 >gi|114570609|ref|YP_757289.1| ATP-dependent DNA helicase Rep [Maricaulis maris MCS10] gi|114341071|gb|ABI66351.1| ATP-dependent DNA helicase, Rep family [Maricaulis maris MCS10] Length = 763 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 116/665 (17%), Positives = 201/665 (30%), Gaps = 126/665 (18%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+ K DF DL+++T + K + + ++L+DE QDT++ Sbjct: 186 QDLYRIYQSRLKTLNACDFGDLLLHTLHIFKDNPD---VLKFYHDKFRYLLVDEYQDTNI 242 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 243 AQYLWLRLLAQ----------GTGNICCVGDDDQSIYGWRGAEVDNILRFEKDF------ 286 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 ++I L ++RSTA IL + + + G + L Sbjct: 287 --SGATVIRLERNYRSTAHILGAASGLIAANRSRLGKT---------------------L 323 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 W ++ +D + AR +A I N + Sbjct: 324 W-------TDDAEGEKVQVRGIWDGEAE-------ARFVAEEIENWVSGQRA-------- 361 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 D VLVR L + + ++D A R + S Sbjct: 362 --YSDSAVLVRAAWQMRAFEDRFIML----GLPYKVIGGPRFFERAEVRDAHAYLRLVRS 415 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ------KFANCGISKFQH 483 EDDL+F ++ +P + + KI T R + E + + + Sbjct: 416 PEDDLAFERIVNTPKRGIGDTTVQKIAVTARAMGVPMTEATRVMLGTDEIRGKARTALGV 475 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540 ++ + ++ + +IL + + + L E + + Sbjct: 476 FLRDVERWREQSEQSRLDELAEIILDESGYTAMWREDKTPQAAGKLENLKELVRSMGEYD 535 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 L + LE + +E+ +MT+H AKGLE P+VFL VF Sbjct: 536 T--------LEAYLEHVALLTDADRKPDEDEISLMTLHGAKGLEFPLVFLPGWEETVFPS 587 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 + + EE RL YVG+TRA + Sbjct: 588 QRSLDEGGT--------------------------------RSLEEERRLAYVGITRARE 615 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 + II +N + V S DE S + + + Sbjct: 616 RAIITFTANRM------IYGRWQTVIPSRFIDEMPVDHVEARSETGYYDSGPGFESVSQQ 669 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780 + + Q + IN L S T + F Sbjct: 670 PDAMASSYSSPGWKRYQANQQSGRRSAPPTINAKATLIESGGSDTQGTWRAGDRVFHDKF 729 Query: 781 NRGLI 785 G + Sbjct: 730 GYGTV 734 >gi|170695890|ref|ZP_02887030.1| UvrD/REP helicase [Burkholderia graminis C4D1M] gi|170139188|gb|EDT07376.1| UvrD/REP helicase [Burkholderia graminis C4D1M] Length = 787 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 119/724 (16%), Positives = 217/724 (29%), Gaps = 168/724 (23%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ LI + W + + S ++ + L Sbjct: 28 GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87 Query: 66 FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110 F L + L + + T + L + L K Q Sbjct: 88 FHGLCNRMLRAHHRDAALPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170 +++ K +T L Y++ ++ V+DF +L++ +LL A +R Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHN---APLR 204 Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230 HIL+DE QDT+ +Q+ ++ L ++FAVGD+ QSIY+F Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGQ----------TNSIFAVGDDDQSIYAFR 254 Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290 GA + + R +I+L ++RS IL +++ + G + Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306 Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350 + G V+++ + ++ + A I Sbjct: 307 TD---------AGHGEPVRVY--------------------------EAATDTQEAGWIV 331 Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410 I +I T T ++ VL R + I + I+ Sbjct: 332 EEIKALINTGT----------SRSEVAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377 Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469 + +K +A R I + DD +F ++ P I ++ R ++ Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAA 437 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528 I A S I ++ Q S D ++ A + + R G + ++ Sbjct: 438 IPYVAGKAGSSLAAFANLIGKMRAETQQMSLPDTVEYVVRASGLADFYQNEREGQDRLEN 497 Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543 L E +N Sbjct: 498 LQELVNAAAAFVSEEGYGMNTPARSIPLRPGATAAPELAVATDDPNVVVLDAPGIADPAQ 557 Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 ++ L L A V++MTVH AKGLE VF+ +F H+ Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + ++ EE RL+YV +TRA ++ Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643 Query: 662 LIIC 665 L + Sbjct: 644 LYLS 647 >gi|222055070|ref|YP_002537432.1| UvrD/REP helicase [Geobacter sp. FRC-32] gi|221564359|gb|ACM20331.1| UvrD/REP helicase [Geobacter sp. FRC-32] Length = 678 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 92/597 (15%), Positives = 191/597 (31%), Gaps = 120/597 (20%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 LA + Y+ A K +DF+D+I+ T DLL+ + + ++++DE QDT Sbjct: 168 LAAEVYPRYQSALKAFNAIDFDDIIMLTADLLQNHPE---VLKHWQERFRYVMVDEYQDT 224 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ ++ L + L VGD+ QSIY + GA+ +L ++ Sbjct: 225 NASQYLLVHLLAGGY----------GNLCVVGDDDQSIYGWRGADVGNILDFEKDF---- 270 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 ++ +I+L ++RST +IL + V E + Sbjct: 271 ----KECRVIKLEQNYRSTGNILEAANHVIGHNEKRKEKR-------------------- 306 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW P + + R+A+ Sbjct: 307 -LW-----TASGSGRPLDIIVVQDDEEEATTVVERVQVERLAH----------------- 343 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + D +L R + RF I V + +KD ++ + I Sbjct: 344 -NLAYSDFAILYRTNAQSRAFEEQLRFE----DIPYVLIGGMQFFERKEVKDAISYLKVI 398 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKY 487 + D+++ + ++ P + + +I + ++E + +K Sbjct: 399 GNANDEIALLRIVNFPKRGIGDSTVVRINQWSMEQGCPLFEAFGRVDEIEGVAEATKLKV 458 Query: 488 IHELIHIAQFCSPHD----FFT---LILGAKKGRQQFISR-----FGNEVIDVLDEFLNF 535 +A+ + + + + + +++ +N Sbjct: 459 RDLHRLLAEEMTIFEQEGELAEKGKRLFKRLGLEDELYRTIDDPVLARRKAENIEQIVNS 518 Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLV 591 E+ SL + ++ + V +M++H++KGLE P VFLV Sbjct: 519 MAAYEERIPMPSLSGFLEKVSLMDEDRFSGKDKKEHGRDAVTLMSLHSSKGLEFPFVFLV 578 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 ++ HK +E RL Sbjct: 579 GMEEEILPHKRSIYEDFS----------------------------------VDEERRLC 604 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708 YVG+TRA L++ + K +R + + + + ++ ++ ++E Sbjct: 605 YVGITRARKHLVMTRCLQRKKYGKLQERVPSRFLEEIPAHLVKEQQGIAAKTLTEEE 661 >gi|288801211|ref|ZP_06406666.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str. F0039] gi|288331822|gb|EFC70305.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str. F0039] Length = 803 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 107/575 (18%), Positives = 186/575 (32%), Gaps = 121/575 (21%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L + Y + +DF+DL++NT L K+ + IR K ++IL+DE QDT Sbjct: 173 LTYSIYKIYTQRCVNANCMDFDDLLMNTYRLFKEHET---IRQKYANLFSYILVDEYQDT 229 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +Q ++ LT++ + + VGD+ QSIY F GA +L +++ Sbjct: 230 NSVQQHIVSLLTKE----------KQHICVVGDDAQSIYGFRGANIDNILSFQKVYP--- 276 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 + +L ++RST +I+ + + ++ S Sbjct: 277 -----DSKLFKLEQNYRSTQNIVQAANGLIKYNKHQIPKDVYSMQ--------------- 316 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 ++ ++ ASI+ R I I + Sbjct: 317 ----------------EKGEKLVVKEAASDREEASIVCRDI-NKIRRNFDDE-------- 351 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 KD +L R + R +I V IKD++A R + Sbjct: 352 ----YKDFAILYRTNSQSRSFEDELR----KMQIPYVIYGGLSFYQRKEIKDVIAYFRLV 403 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQKFANCGISK 480 ++ D+ + ++ P I K I R +++ +Y I+K Sbjct: 404 VNPSDEEALKRIINYPTRGIGNTTIQKVIDAARLHNVSLWKVISSPAKYNVSLNKGTITK 463 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 + I I + I+ S G E + + EF+N Sbjct: 464 LSGFVNLIRGFIELLDKKDAFVLGMQIIKESGITADIFSSTGVEGLSRQENIQEFINSLQ 523 Query: 538 RN-----EQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591 E+ S+ L L+Q + ++ N+V +MT+H +KGLE P +F+V Sbjct: 524 EFVDARKEEGEGDSI-GLPDFLQQVALLSDSDSNDDTDNKVSLMTIHASKGLEYPNIFIV 582 Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651 +F + EE RLL Sbjct: 583 GLEENIFPSPMMCDSL----------------------------------RKLEEERRLL 608 Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 YV +TRA + I N V Sbjct: 609 YVAITRAEKRCTITFAKNRYRFGNVEFNNRSRFVE 643 >gi|332034801|gb|EGI71338.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudoalteromonas haloplanktis ANT/505] Length = 721 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 99/585 (16%), Positives = 201/585 (34%), Gaps = 121/585 (20%) Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + + A Y+EA + ++DF ++++ + ++LK + Q H+L+DE QD Sbjct: 167 QMMLRVYAAYQEACDRAGLVDFAEILLRSYEVLKNNPT---LLRHYQQRFAHMLVDEFQD 223 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ IQ+ ++ L D + VGD+ QSIY + GA+ + + R Sbjct: 224 TNTIQYAWLKLLAGDTSS----------IMIVGDDDQSIYGWRGAKIENIKRFLTDFS-- 271 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I L ++RSTA IL + + G S Sbjct: 272 -------AETIRLEQNYRSTATILKASNALIQNNSERMGKS------------------- 305 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW + + S + F+ L + AR ++ + + + Sbjct: 306 --LW-------TDGNDGEPISIYAAFNELDE-------ARFVSSKLRSWLNAGNAL---- 345 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 +D +L R + ++ + + IKD ++ R Sbjct: 346 ------QDAAILYRSNAQSRVLEEAM----LQEGLKYRIYGGMRFFERQEIKDALSYLRL 395 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480 + +++DD +F ++ +P + + I R E+ ++ Q + Sbjct: 396 VGNRQDDAAFERVINTPARGIGDKTLSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGA 455 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 ++ + ++ + H+ + + + G + ++ L+E ++ Sbjct: 456 VSKFVELVEQIEDKISDLTLHEQAKYTIQTSGLMAMYQAEKGEKGRARVENLEELISACD 515 Query: 538 RNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 + E + S LQ ++ + + V++MT+H+AKGLE P+VF+V Sbjct: 516 QYELPEDEEYSSPLQGFLAHTSLESGE--GQAEEHEDAVQMMTLHSAKGLEFPLVFMVGV 573 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F + + EE RL YV Sbjct: 574 EEGMFPSQQSN----------------------------------EESGRLEEERRLCYV 599 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 GMTRA D+L I + + + + + + +I Sbjct: 600 GMTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRI 644 >gi|270264844|ref|ZP_06193108.1| hypothetical protein SOD_j00590 [Serratia odorifera 4Rx13] gi|270041142|gb|EFA14242.1| hypothetical protein SOD_j00590 [Serratia odorifera 4Rx13] Length = 1183 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 133/967 (13%), Positives = 295/967 (30%), Gaps = 137/967 (14%) Query: 14 ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73 E I + + + +L ++G ++ L Sbjct: 224 EQIVARIDAIKAQWQAAAGDLEALISQSGVDKRSYSSKHLPNWLHKVGEWVVLETQDYQL 283 Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 + +++++ + K P ++ D T + A + + Sbjct: 284 PKELEKFRQSVLLDKTKKGDPP----RHALFVAIDELFDEPLTLRDLIMARALSEIRLSI 339 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 ++ K++ L F+DL+ + L+ + + I Q +IDE QDT Q+ Sbjct: 340 ----QQEKRQRAELGFDDLLSRLDSALQ-SEGGERLAQAIRQRYPVAMIDEFQDTDPQQY 394 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 + + L S L +GD KQ+IY+F GA+ +R + T Sbjct: 395 RIFQKLY--------VGRSECGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 442 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 L ++RS+ ++ V+ +F+ E + + + Sbjct: 443 ------LETNWRSSPAMVGSVNHLFTQVEKPFLFGQIPFIEVA----------AAEKNRG 486 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368 + + + Q P + W + + ++AR A I + + + K+ Sbjct: 487 LAFELNDQPQPAMQFWLQQGEGVGVSEYQQLMARLCATQIRDWLSAGQRQQAWLVDGEKR 546 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R +QA DI VLVR R + L+ L SV ++R + D KDL+ L + + Sbjct: 547 RAVQASDITVLVRSRNEAALVRDALSAL---AIPSVYLSNRDSVFDTPEAKDLLWLLQAV 603 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 L+ E + + + + L + + + + ++ + + V+ + Sbjct: 604 LAPEQERTLRSAMATGLMGLDAQALDGLNRNERAWDMLVNEFDEYRTLWLR--RGVLPML 661 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545 E+++ +L + G ++ L E L L +E Sbjct: 662 REVMNERH------LAENLLASPGGERRLTDVM------HLGELLQEASAQLDSEHALVR 709 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L + I++ + + ++ + V+++T+H +KGLE +V+L G+ + + Sbjct: 710 WLAQQIAQPNRQSDNQQLRLESDRHLVKVITIHKSKGLEFDLVWLPFVGNFRQQQQVLYH 769 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662 N + I+ ++ E RLLYV +TR+ Sbjct: 770 DRQSFQAL-------------LDLNADEESIEWAEEERLAEDLRLLYVALTRSVYHCSIG 816 Query: 663 ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 +I + ++ +V D + +L ++ Sbjct: 817 MAPLIQGTRKKQGDTDLHRSALGYLVQAGQAGDAAWLQQRLQQLAGGGIALSLVEQLDEQ 876 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIK------------NDINEPYILNPSTIDTKGK 767 P T + + + D+ ++ + Sbjct: 877 AWLPQAPALTELAAKSFTRPVQDFWRVTSYTGLQQHGSGLMQDLLPRLDVDAAGEQALDS 936 Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827 + + + G +H L + + + + + LL Sbjct: 937 EPALTPHTFPRGAAPGTFLHSLFETLDFTQPLDEQWLFEQL---QQQGFAEHWQPILLAW 993 Query: 828 ITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKK--------------------- 860 + LL P+ ++ +E+ I + Sbjct: 994 MQVLLNVPLNDAGVSLSALAPQHKQAELQFYLPIEKLLQAGELDKLVKKHDPLSARCPTL 1053 Query: 861 -----DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSI 906 ++ G ID + Q ++ +YK++ + + Q + Sbjct: 1054 NFQQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTRAAMEQAMAEHRYDLQYQL 1113 Query: 907 YEKILKD 913 Y L Sbjct: 1114 YTLALHR 1120 >gi|260430925|ref|ZP_05784896.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis ITI-1157] gi|260414753|gb|EEX08012.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis ITI-1157] Length = 800 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 106/621 (17%), Positives = 191/621 (30%), Gaps = 139/621 (22%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L A Y+ ++ +DF DL+++ + + A + + + +IL+DE QDT++ Sbjct: 197 ELYAQYQTRLRELNAVDFGDLLLHVVTIFQTH---ADVLEQYQRWFRYILVDEYQDTNIA 253 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 254 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 297 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL V E+ G +LW Sbjct: 298 --GAHVVRLEQNYRSTPHILAAASNVIRGNESRLGK---------------------ELW 334 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ ++D + AR I I M G R + Sbjct: 335 -------TDKPEGEKVRLIGHWDGEEE-------ARWIGEEIDAMQGG-----TRGVRPM 375 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 +I +LVR + + + I+D MA R ++S Sbjct: 376 NLDEIAILVRASHQMRAFEDRF----LTIGLPYKVIGGPRFYERMEIRDAMAYFRLVVSP 431 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484 EDDL+F ++ +P + I R ++ + G + + + Sbjct: 432 EDDLAFERIVNAPKRGLGDKAQQTIQRTAREHGVSLVQGARIAVEQGLIKGKGGAALREL 491 Query: 485 IKYIHELIHIA------------------------QFCSPHDFFTLILGAKKGRQQFISR 520 ++ + + S + ++L + + Sbjct: 492 VEGLARWNALTRGPRIEIEDDAVIDDGTAPVRYGPPEVSHIELAQIVLDESGYTAHWQND 551 Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 E ++ L E +N E L LE + + +V IMT+ Sbjct: 552 KTPEAPGRLENLKELVNQLDNFEN--------LQGFLEHVSLVMDNEQDSGGPKVSIMTL 603 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H AKGLE P VFL +F + + Sbjct: 604 HAAKGLEFPAVFLPGWEDGLFPSQRS--------------------------------MD 631 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA + I +N + + + + V Sbjct: 632 ESGLKGLEEERRLAYVGITRAEEVCTISFAANRRVFGQWQNAMPSRFIDELPEDHVEVLT 691 Query: 698 IKLTNSINKDEWIAYEWSTHH 718 + + Sbjct: 692 PPGLYGGGQMSAGIESRAAQA 712 >gi|114766608|ref|ZP_01445560.1| DNA helicase II, putative [Pelagibaca bermudensis HTCC2601] gi|114541148|gb|EAU44201.1| DNA helicase II, putative [Roseovarius sp. HTCC2601] Length = 816 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 105/669 (15%), Positives = 196/669 (29%), Gaps = 153/669 (22%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 L Y+ ++ DF DL+++ + + I + + +IL+DE QDT++ Sbjct: 195 ELYEQYQTRLRELNACDFGDLLLHVVTIFQAHPD---ILEQYQRWFRYILVDEYQDTNVA 251 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L + + VGD+ QSIY + GAE +LR ++ Sbjct: 252 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST IL V E G +LW Sbjct: 296 --GAHVVRLEQNYRSTEHILAAAGGVIRGNEGRLGK---------------------ELW 332 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + ++ ++D + AR I I ++ Sbjct: 333 -------TAAEGGEKVRLIGHWDGEEE-------ARWIGEEIESLQKGTRGLD-----PK 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D+ +LVR + + + I+D MA R ++S Sbjct: 374 SLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLVVSP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484 +DDL+F ++ +P + I R ++ + + + G K + + Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQLIQHTARQFGVSLLDGARIAVDEGRIKGKGGGHLRQL 489 Query: 485 IKYIHELIHIA-----------------------------------QFCSPHDFFTLILG 509 + + + + +IL Sbjct: 490 CENLARWREAMLGPVLRGGEVPDDGIEDAVIDNEEPLTVGETRRGTPRMTHMELAEMILD 549 Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566 + + E ++ L E + + E L LE + Sbjct: 550 ESGYTAMWQNDKTPEAPGRLENLKELVKALEQFEN--------LQGFLEHVALIMDNETE 601 Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626 + +V IMT+H AKGLE PVVFL +F + Sbjct: 602 ESGAKVSIMTLHAAKGLEFPVVFLPGWEDGLFPSQRS----------------------- 638 Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686 + + EE RL YVG+TRA I N + + Sbjct: 639 ---------MDESGQKGLEEERRLAYVGITRAEQLCTISFAGNRRVFGQWQSALPSRFI- 688 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746 E+ ++ + + A E + +++ ++ Sbjct: 689 --DELPEQHVEVLTPPGLYGGGFGAAAPYGAGSGLETRAAEANVYNSPGWKRLQERSGQR 746 Query: 747 IKNDINEPY 755 + E Sbjct: 747 PMSQPRESR 755 >gi|194444795|ref|YP_002042242.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403458|gb|ACF63680.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1181 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 121/876 (13%), Positives = 271/876 (30%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 + + ++ V + P W +S S Sbjct: 467 TFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + + + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESVALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHNLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|29654533|ref|NP_820225.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493] gi|29541800|gb|AAO90739.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493] Length = 1110 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 148/910 (16%), Positives = 304/910 (33%), Gaps = 138/910 (15%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112 + + +++ FLT++ +K + ++ ++ DL +L K+ ++ + Sbjct: 274 DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332 Query: 113 RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 T +++ L A ++ +DF ++ + L + Sbjct: 333 EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++D++I H+LIDE QDTS+IQ+ +I L + RTLF VGD QS Sbjct: 393 PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F AE L+ K + + + L +FRS +++ ++ F + Sbjct: 448 IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLTLRNNFRSQKNLIDWFNQTFEPTFPKE 502 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 S + + H ++ N + ++ S ++ +A Sbjct: 503 ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A +I I + K I +LVR R IT R I Sbjct: 541 ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 + L + I+DL++L R + D ++++ +L++P + D+ + ++ Sbjct: 586 AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645 Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + G ++ + + + I A G + Sbjct: 646 WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 + L + +L+ L +L Q I N ++IMT+H A Sbjct: 706 TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637 KGLE V L + S H + + I P S+ + + + L + Sbjct: 758 KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693 K+ T E RLLYV TRA + + N + K + ++ ++++ Sbjct: 818 IEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 I +++ + + +++L + P L + + Sbjct: 878 EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESKP 921 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808 P++ G++IH+ L+ I + Sbjct: 922 LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964 Query: 809 CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861 + +L + E ++ ++++ L + +S SE ++ + Sbjct: 965 QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020 Query: 862 IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916 I ID I + +I +YK+ + ++ H AQL Y Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALDS 1080 Query: 917 NKSLVCLLIY 926 + + L + Sbjct: 1081 -RPIKLGLYF 1089 >gi|153950402|ref|YP_001399975.1| exonuclease V subunit beta [Yersinia pseudotuberculosis IP 31758] gi|152961897|gb|ABS49358.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis IP 31758] Length = 1220 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 128/989 (12%), Positives = 295/989 (29%), Gaps = 164/989 (16%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 + + L + +L +G ++ L + + Sbjct: 226 VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 285 Query: 76 QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132 + +++++ T++ L + ++ + +RD + + + Sbjct: 286 ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 339 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 ++ K++ L F+DL+ + L++ + I +IDE QDT Q Sbjct: 340 -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 393 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + + ++ L +GD KQ+IY+F GA+ +R + T Sbjct: 394 YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 442 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 L ++RS+ ++ V+++FS+ + I +++ + ++ Sbjct: 443 -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 491 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367 + P W D + ++AR+ A I + + + + Sbjct: 492 ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 545 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +QA DI +LVR R + LI L SV ++R + + KDL+ L + Sbjct: 546 PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWLLQA 602 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 +L+ E + + + + + + + + + + + + V+ Sbjct: 603 VLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPM 660 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + E++ +L G ++ L E L + ++ + Sbjct: 661 LREMMARRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALI 708 Query: 548 QELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 + L ++ Q + + ++ + VR++T+H +KGLE P+V+L G+ + Sbjct: 709 RWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLY 768 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662 N + ++ E RLLYV +TR+ Sbjct: 769 HDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSV 815 Query: 663 ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYE 713 +I E ++ +V D V KLT Sbjct: 816 GIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEP 875 Query: 714 WSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID-------- 763 + P E + Q + L S Sbjct: 876 PDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGA 935 Query: 764 ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 + + + + + G +H LL+ + + Sbjct: 936 PLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLS 995 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859 + + + L + +++ P+ + +E+ I+ Sbjct: 996 ERL---QQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLL 1052 Query: 860 K--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 + ++ G ID + Q ++ +YK++ Sbjct: 1053 RAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSR 1112 Query: 894 EHIPY---------THIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1113 AYTVEAMTQAMAEHRYDLQYQLYTLALHR 1141 >gi|323345466|ref|ZP_08085689.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269] gi|323093580|gb|EFZ36158.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269] Length = 790 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 116/697 (16%), Positives = 208/697 (29%), Gaps = 131/697 (18%) Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177 + + A + + + A Y K++ +DF+DL++ T L + D IR K Sbjct: 163 AIRRDQEAHVPMVGAIYAAYARQCKQSNAMDFDDLLLLTYRLFNEHDD---IRTKYADRF 219 Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237 ++L+DE QDT+ Q V+ LT++ R + VGD+ QSIY F GA + Sbjct: 220 RYVLVDEYQDTNYAQQCVVLQLTKE----------HRQICVVGDDAQSIYGFRGANIDNM 269 Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297 L ++I ++ + +L ++RST I+ + + E I Sbjct: 270 LGFRQIY--------KEVRLFKLEQNYRSTQRIVQAANSLIKHNE----------RQIPK 311 Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357 G +++ S + A + I + Sbjct: 312 EIFSKNDEGEKIVYKPAYSDKE-------------------------EAIIVCKDIKRIK 346 Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417 D + D +L R + R I Sbjct: 347 RQD---------DCEYNDFAILYRTNSQSRSFEEEMR----RQHIPYRIYGGLSFYQRKE 393 Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY-------EY 469 IKD++A R ++ D + ++ P + KI T + +++ +Y Sbjct: 394 IKDIIAYFRMAVNPFDSEALKRIINYPTRGIGNTTMSKITSTANKHSVSLWNVILDPQQY 453 Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526 N + K I E + + ++ A + S + Sbjct: 454 GLDINNTTLQKLHGFKTLITEFVERVATADAYTLGKEMIKASGISAEIYSGTDPDDLSRQ 513 Query: 527 DVLDEFLNFTLRN-EQNSYSSLQE---LISELEQYP-PTIKRAHSANHNEVRIMTVHTAK 581 + LDEFL E L+ L L++ T + + ++V +MT+H AK Sbjct: 514 ENLDEFLAGMQDFVEGRKEEGLENEVYLTDFLQEVSLLTDIDSEDDSDSKVSLMTIHAAK 573 Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 GLE VF+V +F Sbjct: 574 GLEFSTVFVVGLEENIFPSPLSCNSMRELEEERRLL------------------------ 609 Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701 YV +TRA I+ N + T + D +++ Sbjct: 610 ----------YVAITRAKKHCILTNAKNRYRFGRMEFDTPSRFLRDLDAKYLKIESETEE 659 Query: 702 NSINKDEWIA------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + +P N + + P+ + Sbjct: 660 EDATTSYFARSRNQWSERREQKYPANRSYMERHSWGDANYGYNDHIQNNRPVASQFRADI 719 Query: 756 I-----LNPSTIDTKGKTNL-ESLLSDNQTFNRGLII 786 +PS I T L E + ++Q F G +I Sbjct: 720 KPKITGRHPSDISTANSVLLSEGDIIEHQRFGVGTVI 756 >gi|51597340|ref|YP_071531.1| exonuclease V subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108806489|ref|YP_650405.1| exonuclease V subunit beta [Yersinia pestis Antiqua] gi|108813141|ref|YP_648908.1| exonuclease V subunit beta [Yersinia pestis Nepal516] gi|145598977|ref|YP_001163053.1| exonuclease V subunit beta [Yersinia pestis Pestoides F] gi|149366978|ref|ZP_01889011.1| exodeoxyribonuclease V beta chain [Yersinia pestis CA88-4125] gi|162420885|ref|YP_001607582.1| exonuclease V subunit beta [Yersinia pestis Angola] gi|165927070|ref|ZP_02222902.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|166011533|ref|ZP_02232431.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212838|ref|ZP_02238873.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399985|ref|ZP_02305503.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419811|ref|ZP_02311564.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425407|ref|ZP_02317160.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468472|ref|ZP_02333176.1| exonuclease V subunit beta [Yersinia pestis FV-1] gi|170023292|ref|YP_001719797.1| exonuclease V subunit beta [Yersinia pseudotuberculosis YPIII] gi|186896447|ref|YP_001873559.1| exonuclease V subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218928189|ref|YP_002346064.1| exonuclease V subunit beta [Yersinia pestis CO92] gi|229837728|ref|ZP_04457888.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis Pestoides A] gi|229840949|ref|ZP_04461108.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843049|ref|ZP_04463199.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229903584|ref|ZP_04518697.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis Nepal516] gi|270487366|ref|ZP_06204440.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis KIM D27] gi|51590622|emb|CAH22263.1| exodeoxyribonuclease V beta chain [Yersinia pseudotuberculosis IP 32953] gi|108776789|gb|ABG19308.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis Nepal516] gi|108778402|gb|ABG12460.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis Antiqua] gi|115346800|emb|CAL19686.1| exodeoxyribonuclease V beta chain [Yersinia pestis CO92] gi|145210673|gb|ABP40080.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis Pestoides F] gi|149290592|gb|EDM40668.1| exodeoxyribonuclease V beta chain [Yersinia pestis CA88-4125] gi|162353700|gb|ABX87648.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis Angola] gi|165920966|gb|EDR38190.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989481|gb|EDR41782.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206130|gb|EDR50610.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962552|gb|EDR58573.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050693|gb|EDR62101.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055807|gb|EDR65591.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749826|gb|ACA67344.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis YPIII] gi|186699473|gb|ACC90102.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis PB1/+] gi|229679354|gb|EEO75457.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis Nepal516] gi|229689925|gb|EEO81984.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229697315|gb|EEO87362.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704105|gb|EEO91117.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis Pestoides A] gi|270335870|gb|EFA46647.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis KIM D27] Length = 1220 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 128/989 (12%), Positives = 295/989 (29%), Gaps = 164/989 (16%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 + + L + +L +G ++ L + + Sbjct: 226 VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 285 Query: 76 QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132 + +++++ T++ L + ++ + +RD + + + Sbjct: 286 ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 339 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 ++ K++ L F+DL+ + L++ + I +IDE QDT Q Sbjct: 340 -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 393 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + + ++ L +GD KQ+IY+F GA+ +R + T Sbjct: 394 YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 442 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 L ++RS+ ++ V+++FS+ + I +++ + ++ Sbjct: 443 -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 491 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367 + P W D + ++AR+ A I + + + + Sbjct: 492 ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 545 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +QA DI +LVR R + LI L SV ++R + + KDL+ L + Sbjct: 546 PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWLLQA 602 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 +L+ E + + + + + + + + + + + + V+ Sbjct: 603 VLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPM 660 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + E++ +L G ++ L E L + ++ + Sbjct: 661 LREMMARRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALI 708 Query: 548 QELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 + L ++ Q + + ++ + VR++T+H +KGLE P+V+L G+ + Sbjct: 709 RWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLY 768 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662 N + ++ E RLLYV +TR+ Sbjct: 769 HDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSV 815 Query: 663 ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYE 713 +I E ++ +V D V KLT Sbjct: 816 GIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEP 875 Query: 714 WSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID-------- 763 + P E + Q + L S Sbjct: 876 PDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGA 935 Query: 764 ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 + + + + + G +H LL+ + + Sbjct: 936 PLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLS 995 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859 + + + L + +++ P+ + +E+ I+ Sbjct: 996 ERL---QQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLL 1052 Query: 860 K--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 + ++ G ID + Q ++ +YK++ Sbjct: 1053 RAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSR 1112 Query: 894 EHIPY---------THIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1113 AYTVEAMTQAMAEHRYDLQYQLYTLALHR 1141 >gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15] Length = 721 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 102/587 (17%), Positives = 204/587 (34%), Gaps = 119/587 (20%) Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILID 183 L++ + YE+ ++ ++DF +L++ +++L L + + + HIL+D Sbjct: 166 HFLSIMLKIYRQYEKLCQQGGLVDFGELLLRSHELWLHRPE----LLAHYQSRFQHILVD 221 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ IQ+ ++ L S+ + VGD+ QSIY + GA+ + + + +R Sbjct: 222 EFQDTNTIQYAWLQVLA----------SNRVPMTVVGDDDQSIYGWRGAKVENIQQYQRD 271 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 ++ L ++RST IL + V + + G Sbjct: 272 FPN--------ARLVRLEQNYRSTQMILKAANAVIANNQGRLGK---------------- 307 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 +LW + S + F+ + A IA +IS + + Sbjct: 308 -----ELW-------TDGPEGEPISLYAAFNEQDE-------ANYIADSISAWVQDGNL- 347 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + +L R + ++ I D I++ +A Sbjct: 348 ---------RSESAILYRSNAQSRVLEESL----MRQGIPYRVYGGLRFYDRQEIRNALA 394 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK-- 480 R + + DD +F ++ P + ++ ++ +++E ++ + G K Sbjct: 395 YLRLVQYRRDDAAFERVVNVPPRGIGAKSLAELREYATEQSISLWESAERLLDAGQVKGR 454 Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFL 533 Q I I L + S H + G ++ L+E + Sbjct: 455 AKTGLQSFIAIIEGLSEMVGDASLHGLMKQTIENSGLKDYHASEKGEKGQARVENLEELV 514 Query: 534 NFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592 N E ++ +L E I++ + + V++MT+H+AKGLE P+VFL Sbjct: 515 NALSDYEVEDGVDALSEFIAQAALDAGES--QAGDHEDSVQLMTLHSAKGLEFPLVFLAG 572 Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652 +F H + EE RL Y Sbjct: 573 VEEGLFPHGMSLEEPG----------------------------------RMEEERRLAY 598 Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 VG+TRA +L++ + + V + + + +++ Sbjct: 599 VGITRAMKKLVLTYAESRRLYGQEKFNALSRFVREIPGDCLQEVRLR 645 >gi|217031822|ref|ZP_03437325.1| hypothetical protein HPB128_199g30 [Helicobacter pylori B128] gi|298735552|ref|YP_003728073.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Helicobacter pylori B8] gi|216946474|gb|EEC25076.1| hypothetical protein HPB128_199g30 [Helicobacter pylori B128] gi|298354737|emb|CBI65609.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Helicobacter pylori B8] Length = 681 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 96/572 (16%), Positives = 184/572 (32%), Gaps = 118/572 (20%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y+ A KK+ ++DF+DL+ + +L+ + I + + ++I++DE QDT+ +Q Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E ++ L+ + L VGD+ QSIY F GA+ +L + + Sbjct: 215 EFLKKLS----------CTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I++L ++RS+A+IL + + S ++ + +S + V Sbjct: 257 GAKIVKLETNYRSSAEILACANSLISHNQHRHVKT--------LQSFKGSHKSVVCKEYL 308 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + +AY I ++ N Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 I +L R + I L I + +KD +A + ++D Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486 +L P + I + E + + K + + Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDEEDLNLEEALKLGAFKDKLNPKNEYALKKFMT 447 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545 I L A S +F L + + E + E L+ + + + + Sbjct: 448 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L+ L + + + N +V M+VH +KGLE VF++ F H Sbjct: 507 --HSLLDFLNESVLDVHN--AENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++S EE RL YV +TRA + L + Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 S + + + ++ + Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLKQDKPP 619 >gi|270264259|ref|ZP_06192526.1| DNA helicase II [Serratia odorifera 4Rx13] gi|270041908|gb|EFA15005.1| DNA helicase II [Serratia odorifera 4Rx13] Length = 723 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 116/722 (16%), Positives = 225/722 (31%), Gaps = 132/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 33 GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 92 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + + LK +K + + R Sbjct: 93 FHGLAHRLLRAHHMDANLPQDFQILDSDDQFRLLKRIVKALNIDEKQWPPRQAMWYINGK 152 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + Y+EA + ++DF +L++ ++L + I Sbjct: 153 KDEGLRPQHVETYNNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 209 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + ++L+DE QDT+ IQ+ IR L+ + + VGD+ QSIY + Sbjct: 210 LNHYRERFTNVLVDEFQDTNSIQYAWIRLLSGN----------NSNVMIVGDDDQSIYGW 259 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R + + L ++RST++IL + + + G + Sbjct: 260 RGAQVENIQRFLKDFP--------GAQTVRLEQNYRSTSNILKAANTLIANNGGRMGKN- 310 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + R + Sbjct: 311 --------------------LW-------TEGAEGEPISIYCAFNELDES-------RFV 336 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D +L R + ++ + Sbjct: 337 VGRIKTWQENGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGG 382 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD +A R I ++ DD +F ++ +P + + ++ R T+++ Sbjct: 383 QRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDEVRRTARDRQLTLWQ 442 Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFIS 519 + A S Q + + L H H ++ +Q Sbjct: 443 ATRALLQDKVLAGRAASALQRFTELVDSLAHETADMPLHVQTDRVIRDSGLFIMYEQEKG 502 Query: 520 RFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 G I+ L+E + T + Q+ L L + L + A + V++MT+ Sbjct: 503 EKGQARIENLEELVTATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTL 562 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P+VF+V +F + Sbjct: 563 HSAKGLEFPLVFIVGMEEGMFPSQMSLDEGG----------------------------- 593 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA +L + K + + + + Sbjct: 594 -----RLEEERRLAYVGLTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEDCVEEVR 648 Query: 698 IK 699 ++ Sbjct: 649 LR 650 >gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella insecticola LSR1] gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella insecticola LSR1] Length = 715 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 120/693 (17%), Positives = 225/693 (32%), Gaps = 133/693 (19%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G +S L+++ W L +S + + + + L +A Sbjct: 28 GAGSGKSRVLVHRIAWLLSQEDISPFSIIAVTFTNKSAAEMRHRIENLGRAH-NGMWVGT 86 Query: 66 FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F L+ L ++ + + + +K +K + K R + Sbjct: 87 FHGLAHRLLRIHHLAANLPQDFQVLDSDDQLRFVKRIIKSLDLDEKKWSPRQAISYINGK 146 Query: 123 TLASLT-------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 L + + Y +A + +DF +L++ ++L I Sbjct: 147 KDMMLRPENIENYGNPVENIWLRIYQAYHDACHRTGSVDFAELLLRAHELWLNNPC---I 203 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 Q +HIL+DE QDT+ IQ+ I L D T+ VGD+ QSIY + Sbjct: 204 LQHYRQRFSHILVDEFQDTNKIQYAWIHLLAGD----------QATVMIVGDDDQSIYGW 253 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + L ++RST ILT + + + G + Sbjct: 254 RGAQVENIQLFLNDF--------TGAETLRLEQNYRSTHHILTAANSLIAHNTKRMGKN- 304 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + S S + L + AR + Sbjct: 305 --------------------LW-------TKRATGEAISLYSAINELDE-------ARFV 330 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + KD VL R + ++ ++ Sbjct: 331 VSKIKTWQSQGGLL----------KDCAVLYRSNAQSRVLEDAL----LQARVLYRIYGG 376 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468 + IKD +A R I ++ DD++F ++ +P + + I R + T+++ Sbjct: 377 QRFFERQEIKDALAYLRLIANRHDDVAFERVVNTPPRGIGDRTLETIRQYARDQQLTLWQ 436 Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 Q +N + Q I+ + L + S ++ A + G Sbjct: 437 TTLIVLQNQILSNRAAASLQRFIELVEALANETAEMSLQSQTERVIRASGLWTMYQEEKG 496 Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578 + I+ L+E + T + + ++ L + L +R + + V++MT+H Sbjct: 497 EKGQARIENLEELITATQQY-HHEDKTMLPLSAFLSYAALEAGERQPDGDQDAVQLMTLH 555 Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638 +AKGLE VF+V +F + + Sbjct: 556 SAKGLEFLQVFIVGMEEGMFPSQMALNENG------------------------------ 585 Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L + + Sbjct: 586 ----RLEEERRLAYVGVTRAMQKLTLSYAESRR 614 >gi|294807341|ref|ZP_06766153.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD CC 1b] gi|294445471|gb|EFG14126.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD CC 1b] Length = 614 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 90/547 (16%), Positives = 179/547 (32%), Gaps = 121/547 (22%) Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183 A + + + Y + ++ +DF+DL++ T L + + + + +++L+D Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPD---VLTRYQDQFHYVLVD 228 Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243 E QDT+ Q +I LT++ + + VGD+ QSIYSF GA+ +L +I Sbjct: 229 EYQDTNYAQHSIILQLTKE----------NQRICVVGDDAQSIYSFRGADIDNILYFTKI 278 Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303 + +L ++RST I+ + + E + S Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318 Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363 + + + +Y D + +A I+ + Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRREYH-- 353 Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 + +L R + + R + IKD++A Sbjct: 354 -------YGYAEFAILYRTNAQSRIFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 402 Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475 R +++ D+ +F ++ P + + KI + + +++ + + Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATNHGVSLWAAVCEPLSYGLDINK 462 Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532 +K Q + I I + ++ T I+ E + ++E Sbjct: 463 GTHAKLQGFRELIEGFIADQADKNAYEIGTDIIRQSGIINDVCQDTSPENLSRKENIEEL 522 Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586 +N + E N SL + +SE+ + + +V +MTVH+AKGLE Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKVTLMTVHSAKGLEFK 581 Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646 VF+V +F + EE Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607 Query: 647 YNRLLYV 653 RL YV Sbjct: 608 ERRLFYV 614 >gi|290476676|ref|YP_003469581.1| exonuclease V subunit beta [Xenorhabdus bovienii SS-2004] gi|289176014|emb|CBJ82817.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Xenorhabdus bovienii SS-2004] Length = 1205 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 136/923 (14%), Positives = 284/923 (30%), Gaps = 151/923 (16%) Query: 74 LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133 L + + T++ + + + + +RD + + + + Sbjct: 290 LDKFSQSRLAEKTKKGETPQHPVFTAIDDLYQQPLTLRDIIISKAIVE-----------I 338 Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 + K + F+DL+ + L++ + + I Q +IDE QDT Q+ Sbjct: 339 RQSVNQEKLMRGHMGFDDLLTRLDSALQR-EGGKQLATTIRQRYPVAMIDEFQDTDPQQY 397 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 + +++ D + + L +GD KQ+IY+F GA+ +R + T Sbjct: 398 RIFQAIYCDQPENEQRENG---LMFIGDPKQAIYAFRGADIFTYIRARSQVSAHYT---- 450 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 L ++RS+ ++ V+K+FS E S+ ++ + Sbjct: 451 ------LETNWRSSVPMVQAVNKLFSHTERPFLFSQIPFINVK----------AAEKNHN 494 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM-----IGTDTIFSNGKK 368 + Q + W + + + +AR A I + G + K Sbjct: 495 LRFLFHHQEQAALQFWLQPGEGVAKGGYEQSMARHCAAQIRDWLLAGQQGQALLQQAEKS 554 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 + + A DI VLVR R++ +I LK SV ++R + D KDL+ L + + Sbjct: 555 QPVTAADITVLVRNRREAAMIRDELNALKIP---SVFLSNRDSVFDTPEAKDLLWLLQAV 611 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 LS E + L S LF S I ++ E S + + + Sbjct: 612 LSPEKERELRSALASSLFGLSAQQIDQLNHD--------ETAWDHLVDEFSGYARLWRSR 663 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFTLRNEQNSYS 545 L + + +L G ++ + E L + L +E Sbjct: 664 GVLPMLRAVMVKYQVAENLLAGYDGERRLTDVM------HIGELLQETSLQLDSEHAVVR 717 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L + IS + T + ++ + V+I T+H +KGLE P+V L S + I Sbjct: 718 WLAQQISRPDPQSETQQMRLESDKHLVQICTIHKSKGLEYPLVCLPFICSFRKQEQAIYH 777 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662 + + E RLLYV +TR+ Sbjct: 778 DRQSFETHFSIFQDDEK-------------KALADEERLAEDLRLLYVALTRSIYHCSVG 824 Query: 663 ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------DEWIAY 712 +I + + + ++ D ++ L N +E Sbjct: 825 VAPLIQGNKKKAGNTDLHLSALGYLLQKGQQGDAQLLADSLNELSNDDIQVTLMEETDDV 884 Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK---------------------NDI 751 +W + + ++ L + + + D+ ++ I Sbjct: 885 QWCSQNNNDSLLAARKFRRSIQDDWRVTSYSGLQYSSSHSISHAYTSAFGESVDVIVQSI 944 Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811 ++ + ++ + + + + G +H +L+ + ++ Sbjct: 945 APKLDIDARGEKQEEPSSQMTPHTFPRGASAGTFLHSILEDLDFSELPEQVWLAEKL--- 1001 Query: 812 NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVSVS------------- 852 A + L I + + SE+ Sbjct: 1002 TAAGFDENWAPVLQQWIADFVTAELDEQGIQLANVPRHQQQSEMQFYLPVDKLLHSHALS 1061 Query: 853 -------------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY- 898 ++ + ++ G ID + Q ++ +YK++ + Sbjct: 1062 ALTRRYDPLSAQCAPLSFHQVKGMLKGFIDLVFCWQGKFYVVDYKSNWLGESSQSYTQEA 1121 Query: 899 --------THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1122 MAKAMIEHRYDLQYQLYTLALHR 1144 >gi|326565010|gb|EGE15210.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 103P14B1] gi|326574116|gb|EGE24064.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 101P30B1] Length = 689 Score = 272 bits (694), Expect = 3e-70, Method: Composition-based stats. Identities = 104/601 (17%), Positives = 203/601 (33%), Gaps = 126/601 (20%) Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + N+ E + + +K+ +++ I +D T + L YE Sbjct: 139 RDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLDDPEDLGFVH-----LYELYERN 193 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + +DF+DLI +L++ ++ K I ++L+DE QDT+ Q+E+I+ L Sbjct: 194 LRAYNAVDFDDLITMPVRILRESHE---VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLV 250 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 VGD+ QSIY++ GA+P+ + K+ +++L Sbjct: 251 GRL----------GRFTVVGDDDQSIYTWRGAKPENMALLKQDFPN--------LEVVKL 292 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST IL + V + E+ S LW Sbjct: 293 EQNYRSTNHILGAANAVIANNEHMFEKS---------------------LW-------SD 324 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + + ++ + + + A R+A I ++ + VL Sbjct: 325 KGDGEKIRVITCNNDFDE-------AERVAKEI---------LTHRLRNNQTWDKYAVLY 368 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + R L+ I + IKDLM R I++ +DD +F+ + Sbjct: 369 RSNFQARALEAQLRQLE----IPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRV 424 Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI--SKFQHVIKYIHELI----- 492 + +P + K+ ++ + +K +I+ E I Sbjct: 425 INTPKRGIGSVTLEKLGLFAQHCGTSLLGACTRAGVKDALGAKAGAIIESFGEFINYYTH 484 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543 + P ++ N +D ++ R + Sbjct: 485 QLHDNSDPMPLVRQMITETGYIDYVKESSKNPQQEKGRLDNIEALYLSIAALINRADDEH 544 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++ +I ++ ++ N N+V +MT+H AKGLE V+++ ++ H + Sbjct: 545 DKTIDAVIRKMVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYVYIIGCEEKLLPHVNS 604 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + EE RL+YVG+TRA +L Sbjct: 605 IMS-----------------------------------ANIEEERRLMYVGITRAKSELT 629 Query: 664 I 664 + Sbjct: 630 L 630 >gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 676 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 100/596 (16%), Positives = 199/596 (33%), Gaps = 121/596 (20%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 L + Y+++ K +DF+D+++ T L ++ A + + Q+ +I++DE QDT Sbjct: 166 LTAEIYPRYQKSLKACNAIDFDDILLLTIRLFER---FADVLDRYRQQFRYIMVDEYQDT 222 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + +Q+ ++R L+ S+ L VGD+ QSIY + GA+P +L + Sbjct: 223 NHVQYHMLRLLS----------SAHHNLCVVGDDDQSIYGWRGAKPGNILDFGKDFP--- 269 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308 +I+L ++RST +IL + + ++ G Sbjct: 270 -----GARVIKLEQNYRSTGNILAAANALIVHNQDRHGKK-------------------- 304 Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368 LW + + D + A + I + Sbjct: 305 -LW-------TAGDAGADVVYRCCDDGEDE-------AMAVVEVIHR---------ERFR 340 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 Q +D +L R + R+ I V D +KD +A + + Sbjct: 341 HQYQYRDFAILYRTNGQSRAFEEQLRYE----NIPYVLIGGQQFFDRKEVKDALAYLKVM 396 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFA------NCGISKF 481 + D+++ + +L P E ++ E ++++ + A Sbjct: 397 ANPLDEVNLLRILNYPKRGIGETTAERLIQASVVGECSLWDVLHHSAGIEGIGEKAGEAI 456 Query: 482 QHVIKYIHELIHIAQF-----CSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNF 535 Q+ I + + + + F + L + RQ + ++ L E +N Sbjct: 457 QNFIALMERYQRRYRQPGQLVTTTQELFRELQLEEELYRQADDPKKARRRVENLHEVVNA 516 Query: 536 TLRNEQNS-YSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFL 590 E+ ++L+ + ++ S + V +M++H++KGLE P VFL Sbjct: 517 VSSYEEREAIATLESFLEKVSLLDRDEPPRGSKEEKLKQDAVVLMSLHSSKGLEFPCVFL 576 Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 V H + E RL Sbjct: 577 VGMEEGSLPHN----------------------------------KTIEETQDVSEERRL 602 Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706 YVG+TRA QL + + + R + + + +K + + Sbjct: 603 CYVGITRARQQLTLLGAARRKKYGRLQPREVSRFLSEIPESLIFHEKGDRQAAPPE 658 >gi|262276563|ref|ZP_06054372.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886] gi|262220371|gb|EEY71687.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886] Length = 1187 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 134/972 (13%), Positives = 281/972 (28%), Gaps = 140/972 (14%) Query: 17 YKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFFL 74 K W + + + + + L + AS+ L F Sbjct: 230 VKTAWLAAVADLEALIAGSGVDKRSYSKKSLPNWLREVTDWASRPATGYGLPKNLDRFSA 289 Query: 75 TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134 + T++ + + + ++D + + + L Sbjct: 290 SMLAEK-----TKKGEVPVHPVFDAIDTLVANPPTLKDALTAHAIREVRLLLA------- 337 Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194 + K++ L F+DL+ + L + + + +I + +IDE QDT Q++ Sbjct: 338 ----QEKRRFGWLSFDDLLSQLSQALVQDEQG-LLAARIRELYPVAMIDEFQDTDPQQYQ 392 Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254 + + LF +GD KQ+IY+F GA+ + +R Sbjct: 393 IFSDIY--------MAQPECGLFMIGDPKQAIYAFRGADIFTYIHARRQVADHYN----- 439 Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314 L +++RSTA ++ V+ VF + +D I + WE Sbjct: 440 -----LGINWRSTASVVDAVNHVFKEAASPFVYDDD----IPFTPVAHSPGAEKKQWEVD 490 Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQA 373 + + E+ + A A I ++ + F+ G+ R ++A Sbjct: 491 GVKQAAMTFWLDETLGLVTRGDYETQMADATASSIREVLTKAAEGNAFFTKGEARNPVKA 550 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 DI VLVR + + R L SV ++R + D+ L +L+ + Sbjct: 551 GDIAVLVRTGSEAAKVK---RALARQGIASVYLSNRDSVFSSPLAADVQRLLMAVLTPDS 607 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493 + + L S LF + +I + E + + S + V+ + +++ Sbjct: 608 ERTLRAALASGLFALTAGEIDTLNHDEKAWERAVVEFSTYQSVWFS--RGVMPMLRQVMQ 665 Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553 +L ++G + L E L + + ++ ++ L Sbjct: 666 RRG------IAERLLSEEQGERALTDLM------HLGELLQQASQTLDSHHALIRWLADH 713 Query: 554 LEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610 ++ + + + V+I+T+H +KGLE +V+L + Sbjct: 714 IDNPNGNSEEQQVRLESERDLVQIVTIHKSKGLEYNLVYLPFACNF-----RPSDRPFFH 768 Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 N P + + P I+ K E RL+YV +TRA I Sbjct: 769 DENHTPTLSLSEPDV---------AIEQADKERLAEDLRLVYVALTRAVYGCFIGLAPLK 819 Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730 +K S + + + P +E + Sbjct: 820 DGKKSSGDTGLHKSALGYLLQKGDATDAAGLVAAVDALVANTDSMVRRPPPPRVEGLLAV 879 Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS--------------- 775 + DE + I+ D Sbjct: 880 EAASDEAIEARNFTGHIRRDWRLTSYSGLVKQGHASALPDVPAFDIDAAEEKQETEETQT 939 Query: 776 --------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFI----TSYCTKNAKLWPAKEYKN 823 + G +H L + + + ++ + +N + Sbjct: 940 EAALSIFQFPKGARPGTFLHTLFENVGFGDDMYSEDVAGMIRHALLLENYDEHWVPVLQK 999 Query: 824 LLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCPKKDII----------------- 863 LL + N + + +E+ + + Sbjct: 1000 LLSDVVNQPLNAQGLTLAHIDAPARLTEMEFVMPVERLDSGRLNRLIAEHDPLSAKAGEL 1059 Query: 864 --------ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSI 906 + G ID + Q F+ ++K+++ ++ + Q I Sbjct: 1060 HFETASGMLKGFIDLVFCWQGRYFVLDWKSNYLGGSPADYTEEALCQAMIEHRYDFQYQI 1119 Query: 907 YEKILKDSYPNK 918 Y L + Sbjct: 1120 YSLALHRFLRQR 1131 >gi|289705452|ref|ZP_06501846.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] gi|289557837|gb|EFD51134.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] Length = 963 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 107/637 (16%), Positives = 197/637 (30%), Gaps = 90/637 (14%) Query: 19 DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-FFLTQK 77 P ++ NK + E I AQ + ++ ++ L Sbjct: 107 RARPHEILAITFTNKAAAEMRERVAGLIGPTAQRMWISTFHSSAVRLLRNEAANIGLKST 166 Query: 78 FTPQKN------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SL 127 FT + + T + + K + +++ + +T+A Sbjct: 167 FTIYDSADSLRLVTTVAKQHELDPKRFAPKALLNRISSLKNELVEADDYAATVAEGDPWG 226 Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187 + Y ++ LDF+DLI T + + + + H+L+DE QD Sbjct: 227 RAVAAVYRGYTARLRQANALDFDDLIGMTVHMF---EAFPRVLDNYRRRFRHVLVDEYQD 283 Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247 T+ Q+ +IR L + + L VGD QSIY+F GA+ + ++ ++ Sbjct: 284 TNHAQYRLIRLLAGPAGDPEGVETPGGELTVVGDSDQSIYAFRGADIRNIVEFEQDF--- 340 Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307 I+L ++RST IL + V + + Sbjct: 341 -----TDAVTIKLEQNYRSTQTILDAANAVIERNPDRRPKR------------------- 376 Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367 LW P + + +S E IA TI + D Sbjct: 377 --LW------TAEGEGPAIVGYAAENESAEAE--------WIASTIDRLQDED------- 413 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 I+ D+ V R + + I D IKD +A R Sbjct: 414 --GIRPADVAVFYRTNAQSRALEERL----VTRGIPYRVIGGTRFYDRKEIKDALAYLRV 467 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISK 480 I++ +DD++ +L P + + + + + A + Sbjct: 468 IVNPDDDVNVRRILNEPKRGIGDRAEGAVAAWAERNRSTFSAALRDAENAPGMAARSLKA 527 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537 + ++ + +L +A+ P +L + D L E + Sbjct: 528 VRGFVQMMDDLGQVAESAGPATVLEAVLEQSGMLAALRESEDLQDESRADNLGELVAVVR 587 Query: 538 RNEQNSYSS-LQELISELEQYPPTIKRA---------HSANHNEVRIMTVHTAKGLESPV 587 E L + + ++ + + +V +MT+HTAKGLE PV Sbjct: 588 SFETTHPDGTLSDFLEQVALVADADQLPTAPDVEGEALAEQQGQVTLMTLHTAKGLEFPV 647 Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624 VFL VF H + G+ + Sbjct: 648 VFLTGMEHGVFPHARSMTDEKELAEERRRGLRGPDAR 684 >gi|238798592|ref|ZP_04642068.1| DNA helicase II [Yersinia mollaretii ATCC 43969] gi|238717548|gb|EEQ09388.1| DNA helicase II [Yersinia mollaretii ATCC 43969] Length = 721 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 103/552 (18%), Positives = 186/552 (33%), Gaps = 116/552 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ I Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + VGD+ QSIY + GA+ + + R Sbjct: 229 QYAWIRLLAGD----------RANVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------ 272 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 I L ++RST++ILT + + + + G + LW Sbjct: 273 --GAETIRLEQNYRSTSNILTAANALIAHNDGRMGKN---------------------LW 309 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S F+ L + AR + I Sbjct: 310 -------TEGAEGEPISIYCAFNELDE-------ARFVVNRIRAWQDNGGAL-------- 347 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R + ++ Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGGQRFFERQEIKDALAYLRLVSNR 401 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHV 484 DD +F ++ +P + + + R T+++ + S Q Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRALLQEKVLAGRAASALQRF 461 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540 ++ + L H H ++ + G + ++ L+E +N T + Sbjct: 462 VELVDSLAHETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSY 521 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 Q+ L L + L + A + V++MT+H+AKGLE P VF+V +F Sbjct: 522 QDEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607 Query: 660 DQLIICKHSNTS 671 +L +C + Sbjct: 608 QKLTLCYAESRR 619 >gi|330816643|ref|YP_004360348.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3] gi|327369036|gb|AEA60392.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3] Length = 789 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 113/707 (15%), Positives = 208/707 (29%), Gaps = 155/707 (21%) Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160 K Q +++ +T + L Y++ ++ V+DF +L++ +LL Sbjct: 138 KNVQYFINNAKEQGLRPDKVDATDNFNRMFVELYQAYDQQCQREGVVDFPELLLRCYELL 197 Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 ++A +R HIL+DE QDT+ +Q+ ++ L +FAVG Sbjct: 198 S---LNAPLRAHYQARFRHILVDEFQDTNKLQYAWLKLLAG----------GQNAIFAVG 244 Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280 D+ QSIY+F GA + + + R ++I+L ++RS +IL + + S Sbjct: 245 DDDQSIYAFRGANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANHLISH 296 Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340 + G + + G V+++E + Sbjct: 297 NSHRLGKNLRTD---------AGHGEPVRVYEAATDSQE--------------------- 326 Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 A I I ++I + ++ VL R + I Sbjct: 327 -----AGWIVEEIRSLINGG----------MARSEVAVLYRSNAQSRAIEHTL----MTA 367 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQ 459 I+ + IK +A R I + DD +F ++ P I ++ Sbjct: 368 GIAYRVYGGLRFFERQEIKHALAYLRLIDNPSDDTAFARVVNFPTRGIGARSIEQLADAA 427 Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518 R + I + I ++ S + ++ A + Sbjct: 428 RLYNCAMAAAIPYVTGKAGTSLGTFANLIAKMRAETAQMSLPETVEYVVRASGLADFYQG 487 Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549 R G + ++ L E +N L Sbjct: 488 EREGQDRLENLQELVNAATAFVSEEGYGLDTPARSIPLRPGAIAAPEITLDGGGDEVLAP 547 Query: 550 ---------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 L L A + V++MTVH AKGLE VF+ Sbjct: 548 AELGDPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFAAVFITGL 607 Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653 +F H++ L+ EE RL+YV Sbjct: 608 EEGLFPHENS----------------------------------ALESDGLEEERRLMYV 633 Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713 +TRA ++L + + + + +T Y++ F + LT + Sbjct: 634 AITRAKERLYLS----FAQSRMLHGQTRYNIRSRFFDELPQQVLKWLTPQVEAGSRWGGR 689 Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760 R + + S + S Sbjct: 690 ADNAGWGRNWFSRPGGGNGGGSRESVVDAAVSAPLPAFANAQRASGS 736 >gi|326797393|ref|YP_004315213.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1] gi|326548157|gb|ADZ93377.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1] Length = 736 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 118/731 (16%), Positives = 236/731 (32%), Gaps = 147/731 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + +++S + + + + L Sbjct: 30 GAGSGKTRVLVHRIAWLMHAYELSPYSLMAVTFTNKAAREMQGRIEQLVGLPPQGMWVGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + D ++L+ + + Sbjct: 90 FHGLAHRLL------RAHWRDAGLKENFQIMDSDDQLRLVKRIMREFNIDDTRWPPKQVA 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + S + L HYEEA ++N +LDF +L++ ++L+ Sbjct: 144 WFINGQKDEGRRAAHVPDSHDPFSKGMRELYYHYEEACERNGLLDFGELLLRAHELMLTN 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + Q H+L+DE QDT+ IQ+ +R + D T+ AVGD+ Sbjct: 204 PA---LLKHYQQRFVHVLVDEFQDTNTIQYAWLRVMVGD----------TGTITAVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + + + I L ++RST IL + + ++ Sbjct: 251 QSIYGWRGAKIENIQNFSKHF--------NDVATIRLEQNYRSTGQILKAANGLIQNNDD 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G +LW + S + F+ + Sbjct: 303 RLGK---------------------ELW-------TDSGDGDPISLYAGFNEQDE----- 329 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 AR I I T KD+ +L R + +I ++ Sbjct: 330 --ARFILEIIKKWRDDGTAL----------KDMAILYRSNAQSRVIEECL----VREQLP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 D L IK+ +A R + DD + ++ P E I + R + Sbjct: 374 YRIYGGHRFYDRLEIKNALAYARLAVDPNDDGAMERVINVPPRGIGERSIGTLREIARDQ 433 Query: 463 TETVYEYIQKFANC------GISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKK-- 512 ++++ + + ++ ++ I + + I D F I+ Sbjct: 434 GCSMWQAAEHIVQHGVMPARASNAIKNFLQIIDGMGNTLIQPDLGLGDVFEHIIQEAGLI 493 Query: 513 -GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE--LISELEQYPPTI-KRAHSAN 568 ++ G I+ L E ++ + +++ L+Q + Sbjct: 494 PHHEKEKGEKGEARIENLKELVSAASGFSWSEDDEEFSSPMMAFLDQAVLDAGEAQADEY 553 Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628 + V++MT+H+AKGLE P+VFL +F K + Sbjct: 554 QDSVQLMTLHSAKGLEFPLVFLTGVEENLFPSKMSFEEPG-------------------- 593 Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688 EE RL YVG+TRA ++L I + + + + + Sbjct: 594 --------------RLEEERRLCYVGITRAMEKLYITYAESRRLHGSESFNSPSRFIREI 639 Query: 689 FHNDERVKKIK 699 +++ Sbjct: 640 PQECIEEVRLR 650 >gi|109900377|ref|YP_663632.1| DNA helicase II [Pseudoalteromonas atlantica T6c] gi|109702658|gb|ABG42578.1| DNA helicase II [Pseudoalteromonas atlantica T6c] Length = 724 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 100/741 (13%), Positives = 231/741 (31%), Gaps = 132/741 (17%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W + ++ + + + LQ ++ + Sbjct: 30 GAGSGKTRVLVHRIAWLMEVEGIAPWGILAVTFTNKAAREMRGRIEELQGSALSNMWIGT 89 Query: 66 FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122 F ++ L + +N + + + ++ +K + + + + + + Sbjct: 90 FHGIAHRLLRTHYAEAKLPENFQILDSDDQYRLVRRVIKSMNLDEKQWAPKHVQWYINGN 149 Query: 123 TLASLTL-------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 L + Y++ ++ ++DF +L++ + L + + Sbjct: 150 KDEGLRPEHIDTHGDYNQKKLCEIYQVYQQTCERAGLVDFAELLLRAHQLWVENPE---L 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 +L+DE QDT+ IQ+ +R L + VGD+ QSIY + Sbjct: 207 LKHYQTRFRAVLVDEFQDTNNIQYAWLRLLAA----------PTNNMIIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA + + R + I L ++RST +IL + V + G Sbjct: 257 RGANVQNIQHFLRDYPQ--------AKTIRLEQNYRSTGNILKAANAVIDNNQGRLGK-- 306 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 +LW + + S + F+ L + AR Sbjct: 307 -------------------ELW-------TDGVDGEPISLYAGFNELDE-------ARFA 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I + D +L R + ++ ++ Sbjct: 334 VSRIKDWQTQGYAL----------SDCAILYRNNAQSRVLEEAL----LQESVAYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468 + I+D + R I Q DD +F ++ +P + + ++ + ++++ Sbjct: 380 LRFFERQEIRDALGYLRIINQQIDDAAFERVVNTPTRGIGDKTLSQVREQAKEHDLSMWQ 439 Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 ++ + + Q + + +L ++ + + G Sbjct: 440 ASLQLLREKRLSGRAANALQAFVDLVLKLQKDTTDLPLEQHADHVIKNSGLYAMYKAEKG 499 Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTV 577 + + L+E + + ++ + + L + + V++MT+ Sbjct: 500 EKAQARIENLEELVTACKQFAPPEEAENMSPMSAFLAHASLEAGDAQADKHQDAVQMMTI 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 HTAKGLE P+V LV +F + Sbjct: 560 HTAKGLEFPMVLLVGVEEGMFPSQMSNDEPG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVGMTRA +L + + + T + + + Sbjct: 591 -----KIEEERRLCYVGMTRAMQKLYLTYAESRRVYGQDKYHTPSRFIKEIPTEFIEEVR 645 Query: 698 IKLTNSINKDEWIAYEWSTHH 718 ++ ++++ ++ S H Sbjct: 646 LRTKATVSRPMQSRFQSSASH 666 >gi|167550134|ref|ZP_02343891.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324737|gb|EDZ12576.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1181 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 Q D + L + + K++ L F+D++ + L+ Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS + Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A + + ++ V + P W +S S Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516 Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + R ++A DI VLVR R++ LI L Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ + + +++ E + + L + + + DI + Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631 Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 + E ++ + + + + + V+ + L S + +L G ++ Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683 Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573 + E L L +E L + I E + + + ++ + V+ Sbjct: 684 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633 I+T+H +KGLE P+V+L + ++ + Sbjct: 738 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784 Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687 + I + E RLLYV +TRA + S+ E +Q ++ Sbjct: 785 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844 Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745 D + + ++D +T + E + + + Sbjct: 845 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904 Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795 D+ ++ + + + + + + G +H L + + Sbjct: 905 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEALAMTPHHFPRGASPGTFLHSLFEELDF 964 Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849 + + L ++ + N ++ + E+ Sbjct: 965 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024 Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886 ++ + + D +I G ID + + ++ +YK++ Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084 Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|154707778|ref|YP_001424668.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111] gi|154357064|gb|ABS78526.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111] Length = 1110 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 148/910 (16%), Positives = 304/910 (33%), Gaps = 138/910 (15%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112 + + +++ FLT++ +K + ++ ++ DL +L K+ ++ + Sbjct: 274 DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332 Query: 113 RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 T +++ L A ++ +DF ++ + L + Sbjct: 333 EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++D++I H+LIDE QDTS+IQ+ +I L + RTLF VGD QS Sbjct: 393 PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F AE L+ K + + + L +FRS +++ ++ F + Sbjct: 448 IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLTLRNNFRSQKNLIDWFNQTFEPTFPKE 502 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 S + + H ++ N + ++ S ++ +A Sbjct: 503 ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A +I I + K I +LVR R IT R I Sbjct: 541 ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 + L + I+DL++L R + D ++++ +L++P + D+ + ++ Sbjct: 586 AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645 Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + G ++ + + + I A G + Sbjct: 646 WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 + L + +L+ L +L Q I N ++IMT+H A Sbjct: 706 TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637 KGLE V L + S H + + I P S+ + + + L + Sbjct: 758 KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693 K+ T E RLLYV TRA + + N + K + ++ ++++ Sbjct: 818 IEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 I +++ + + +++L + P L + + Sbjct: 878 EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESKP 921 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808 P++ G++IH+ L+ I + Sbjct: 922 LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964 Query: 809 CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861 + +L + E ++ ++++ L + +S SE ++ + Sbjct: 965 QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020 Query: 862 IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916 I ID I + +I +YK+ + ++ H AQL Y Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALDS 1080 Query: 917 NKSLVCLLIY 926 + + L + Sbjct: 1081 -RPIKLGLYF 1089 >gi|85060320|ref|YP_456022.1| DNA-dependent helicase II [Sodalis glossinidius str. 'morsitans'] gi|84780840|dbj|BAE75617.1| DNA helicase II [Sodalis glossinidius str. 'morsitans'] Length = 720 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 117/722 (16%), Positives = 222/722 (30%), Gaps = 132/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENCSPYSVMAVTFTNKAAAEMRHRIEHLVGTSQGGMWIGT 89 Query: 66 FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L Q ++ + + LK ++ + + R Sbjct: 90 FHGLAHRLLRAHHQDANLPQDFQILDSEDQLRLLKRLIRAMNLDEKQWPPRQAMWYIGGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + Y+EA + ++DF +L++ ++L + I Sbjct: 150 KDDGLRPQHVESYGNPVEATWQRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + +IL+DE QDT+ IQ+ IR L D + VGD+ QSIY + Sbjct: 207 LRHYRERFTNILVDEFQDTNQIQYAWIRMLAGDD----------GNVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + R I L ++RST++IL + + + G + Sbjct: 257 RGAQVENIQRFLDDFP--------GAQTIRLEQNYRSTSNILQAANALIAHNGGRLGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + + F+ L + A + Sbjct: 308 --------------------LW-------TEGAEGEPITLYCAFNELDE-------ALFV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I KD +L R + ++ + Sbjct: 334 VNRIKVSQEQGGAL----------KDCAILYRSNAQSRVLEEAL----LQTGLPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD +A R I ++ DD ++ ++ +P + + + R T+++ Sbjct: 380 MRFFERQEIKDALAYLRLIANRNDDAAYERVVNTPPRGLGDRTLDVVRQTARDRQLTLWQ 439 Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + A + Q ++ I L H ++ + G Sbjct: 440 SSRALLAERVLAGRAAAALQRFLELIDALAEETAELPLHVQTDRVIKNSGLWSMYEQEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + I+ L+E + T + + L L + L + + + V++MT+ Sbjct: 500 EKGQARIENLEELVTATRQFSYNDEDQDLLPLQAFLSHAALEAGEGQADSYQDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VF+V +F + Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA D+L I K V + + Sbjct: 591 -----RLEEERRLAYVGVTRAMDKLTITYAETRRLYGKEAYHRPSRFVGELPPACVEEVR 645 Query: 698 IK 699 ++ Sbjct: 646 LR 647 >gi|254672332|emb|CBA05496.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275] Length = 671 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 113/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGDPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D Q D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L ++ G + + +++ R ++ EL + Sbjct: 478 NLLKEIDYENHLLASEESKAGEIKWRNVGDLVSWFARKGGEDGKNVIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|227485018|ref|ZP_03915334.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC 51172] gi|227237015|gb|EEI87030.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC 51172] Length = 731 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 104/552 (18%), Positives = 185/552 (33%), Gaps = 118/552 (21%) Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 LDF+DLI +L K + + ++I +DE QDT+ Q+E+IR + Sbjct: 182 NALDFDDLIEKVLELFVKD---SETLRYYQNKFDYIFVDEFQDTNNSQYELIRFIAG--- 235 Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264 + + AVGD QSIYSF GA+ + +L ++ + II+L ++ Sbjct: 236 -------KKQNVVAVGDADQSIYSFRGADIRNILSFEKDFKN--------TKIIKLEQNY 280 Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324 RST+ IL + + + + G L++ Sbjct: 281 RSTSKILETANVLIANNLERKEK----------NLWTENGDGADVLYK------------ 318 Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384 + S S ++ + TI N++ + D+ +L R Sbjct: 319 -------------ETSIESDESKFVIDTIKNLLADG----------YKESDMAILYRTNA 355 Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 + I+ D IKDL+A +++ +DD+S ++ P Sbjct: 356 QSRPFEEAL----LKNLIAYKVVGGLKFYDRKEIKDLIAYLNILVNSKDDVSLKRIINEP 411 Query: 445 LFNFSEDDIFKICT-QRHETETVYEYIQK--FANCGISKFQ----HVIKYIHELIHIAQF 497 + I +I ++ + I F+ + + K + E+ Sbjct: 412 KRGIGDKSIDQIEKIAISHGISMLDLITDDNFSILMTDRLKNLTDKFYKPLEEIFINVDK 471 Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554 D +L + E +D ++EF++ ++ + +L L Sbjct: 472 YKIVDLINEVLEKTGYLRSLEKSLLVEDRARVDNINEFISSAADYQEANPED--DLRDYL 529 Query: 555 EQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613 E N+ + +MT+H AKGLE PVVF+V +F K Sbjct: 530 ENLSLLSDIDKTEENNESISLMTMHQAKGLEFPVVFIVGLDEGLFPSKRSLD-------- 581 Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673 + EE RL YVG+TRA ++L + N Sbjct: 582 ---------------------------EGNLEEERRLFYVGITRAEEKLFLTSAQMRRNY 614 Query: 674 KKSNQRTWYDMV 685 K + Sbjct: 615 GKVTYYKPSRFI 626 >gi|326576083|gb|EGE26002.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis O35E] Length = 689 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 104/601 (17%), Positives = 203/601 (33%), Gaps = 126/601 (20%) Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + N+ E + + +K+ +++ I +D T + L YE Sbjct: 139 RDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLDDPEDLGFVH-----LYELYERN 193 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + +DF+DLI +L++ ++ K I ++L+DE QDT+ Q+E+I+ L Sbjct: 194 LRAYNAVDFDDLIAMPVRILRESHE---VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLV 250 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 VGD+ QSIY++ GA+P+ + K+ +++L Sbjct: 251 GRL----------GRFTVVGDDDQSIYTWRGAKPENMALLKQDFPN--------LEVVKL 292 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST IL + V + E+ S LW Sbjct: 293 EQNYRSTNHILGAANAVIANNEHMFEKS---------------------LW-------SD 324 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + + ++ + + + A R+A I ++ + VL Sbjct: 325 KGDGEKIRVITCNNDFDE-------AERVAKEI---------LTHRLRNNQTWDKYAVLY 368 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + R L+ I + IKDLM R I++ +DD +F+ + Sbjct: 369 RSNFQARALEAQLRQLE----IPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRV 424 Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI--SKFQHVIKYIHELI----- 492 + +P + K+ ++ + +K +I+ E I Sbjct: 425 INTPKRGIGSVTLEKLGLFAQHCGTSLLGACTRAGVKDALGAKAGAIIESFGEFINYYTH 484 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543 + P ++ N +D ++ R + Sbjct: 485 QLHDNSDPMPLVRQMITETGYIDYVKESSKNPQQEKGRLDNIEALYLSIAALINRADDEH 544 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++ +I ++ ++ N N+V +MT+H AKGLE V+++ ++ H + Sbjct: 545 DKTIDAVIRKMVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYVYIIGCEEKLLPHVNS 604 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + EE RL+YVG+TRA +L Sbjct: 605 IMS-----------------------------------ANIEEERRLMYVGITRAKSELT 629 Query: 664 I 664 + Sbjct: 630 L 630 >gi|99081864|ref|YP_614018.1| ATP-dependent DNA helicase Rep [Ruegeria sp. TM1040] gi|99038144|gb|ABF64756.1| ATP-dependent DNA helicase, Rep family [Ruegeria sp. TM1040] Length = 814 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 116/683 (16%), Positives = 199/683 (29%), Gaps = 143/683 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 Y+ K+ +DF DL+++ ++ + + + + +IL+DE QDT++ Sbjct: 195 EFYDQYQTRLKELNAVDFGDLLLHCVEIFQNNPD---LLAQYHRWFRYILVDEYQDTNVA 251 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L S + + VGD+ QSIY + GAE +LR ++ Sbjct: 252 QYLWLRLLA----------SGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDF------- 294 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 +I L ++RST IL+ V E G +LW Sbjct: 295 -SGAKVIRLEQNYRSTKHILSAASGVIRGNEGRLGK---------------------ELW 332 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ ++D + AR I I M R Sbjct: 333 -------TEAEGGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGMRQY 373 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 ++ +LVR + + L I+D MA R ++S Sbjct: 374 GLNEMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRVVISP 429 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484 EDDL+F ++ +P + I T R ++ E + G+ K + + Sbjct: 430 EDDLAFERIVNTPKRGLGDKAQQTIQTVARANGVSLLEGARLAVEDGLIKGKGGAALRRL 489 Query: 485 IKYIHELIHIAQ--------------------------FCSPHDFFTLILGAKKGRQQFI 518 ++ I + + S + +IL + Sbjct: 490 VENIARWGQMTRTVLADPDDPDAVVEGVQSFEAFQARTEVSHVELAEIILDESGYTSMWQ 549 Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + + ++ L E + + L LE + +V IM Sbjct: 550 ADKNPDSPGRLENLKELVKALENFDN--------LQGFLEHVSLVMDNDKQDAEQKVSIM 601 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H AKGLE P VFL +F + Sbjct: 602 TLHAAKGLEFPAVFLPGWEDGLFPSQRS-------------------------------- 629 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695 + EE RL YVG+TRA I N ++ + +E V Sbjct: 630 MDESGLKGLEEERRLAYVGITRAEKVCTISFAGN--RRVFGQWQSQLPSRFIDELPEEHV 687 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 + A ++ E E D P + Sbjct: 688 DVLTPPGLYGGGFGAAAPSASAVAEPAVRSTIEERMSNADGYNSPGWKRMQARTAERGYS 747 Query: 756 ILNPSTIDTKGKTNLESLLSDNQ 778 S T S + Sbjct: 748 KPRKSEAQTIDLAATSSFTVGER 770 >gi|294503038|ref|YP_003567100.1| exodeoxyribonuclease V beta chain [Yersinia pestis Z176003] gi|262365316|gb|ACY61873.1| exodeoxyribonuclease V beta chain [Yersinia pestis D182038] gi|294353497|gb|ADE63838.1| exodeoxyribonuclease V beta chain [Yersinia pestis Z176003] Length = 1159 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 128/989 (12%), Positives = 295/989 (29%), Gaps = 164/989 (16%) Query: 16 IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75 + + L + +L +G ++ L + + Sbjct: 165 VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 224 Query: 76 QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132 + +++++ T++ L + ++ + +RD + + + Sbjct: 225 ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 278 Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 ++ K++ L F+DL+ + L++ + I +IDE QDT Q Sbjct: 279 -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 332 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 + + ++ L +GD KQ+IY+F GA+ +R + T Sbjct: 333 YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 381 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 L ++RS+ ++ V+++FS+ + I +++ + ++ Sbjct: 382 -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 430 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367 + P W D + ++AR+ A I + + + + Sbjct: 431 ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 484 Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427 + +QA DI +LVR R + LI L SV ++R + + KDL+ L + Sbjct: 485 PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWLLQA 541 Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487 +L+ E + + + + + + + + + + + + V+ Sbjct: 542 VLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPM 599 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 + E++ +L G ++ L E L + ++ + Sbjct: 600 LREMMARRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALI 647 Query: 548 QELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 + L ++ Q + + ++ + VR++T+H +KGLE P+V+L G+ + Sbjct: 648 RWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLY 707 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662 N + ++ E RLLYV +TR+ Sbjct: 708 HDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSV 754 Query: 663 ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYE 713 +I E ++ +V D V KLT Sbjct: 755 GIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEP 814 Query: 714 WSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID-------- 763 + P E + Q + L S Sbjct: 815 PDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGA 874 Query: 764 ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805 + + + + + G +H LL+ + + Sbjct: 875 PLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLS 934 Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859 + + + L + +++ P+ + +E+ I+ Sbjct: 935 ERL---QQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLL 991 Query: 860 K--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893 + ++ G ID + Q ++ +YK++ Sbjct: 992 RAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSR 1051 Query: 894 EHIPY---------THIAQLSIYEKILKD 913 + + Q +Y L Sbjct: 1052 AYTVEAMTQAMAEHRYDLQYQLYTLALHR 1080 >gi|291284146|ref|YP_003500964.1| Exodeoxyribonuclease V, beta subunit [Escherichia coli O55:H7 str. CB9615] gi|209761124|gb|ACI78874.1| DNA helicase RecB [Escherichia coli] gi|290764019|gb|ADD57980.1| Exodeoxyribonuclease V, beta subunit [Escherichia coli O55:H7 str. CB9615] gi|320656509|gb|EFX24405.1| exonuclease V subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 1180 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + D+ + L + K++ L F+D++ + L+ Sbjct: 306 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 + + I +IDE QDT Q+ + R + H L +GD K Sbjct: 365 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ ++ + T L ++RS ++ V+K+FS ++ Sbjct: 417 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 A E ++ + + P + W +S S Sbjct: 467 AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516 Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398 +A+ A I + + + + R ++A DI VLVR R++ + L+ Sbjct: 517 TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576 Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458 SV ++R + + L ++++ L + +++ E + + L + + + DI + Sbjct: 577 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633 Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 E+ ++ + + + + S + +L G ++ Sbjct: 634 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I E + + + ++ + V+I+ Sbjct: 686 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + + ++ N + Sbjct: 740 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693 + + E RLLYV +TR+ L + +KK + + E Sbjct: 787 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846 Query: 694 RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747 L I W T + E + + + Sbjct: 847 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906 Query: 748 ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797 D+ ++ + + + + + + + G +H L + + Sbjct: 907 SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966 Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851 N++ + ++ L IT +L+ P+ ++ D E+ Sbjct: 967 PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023 Query: 852 SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885 I+ P ++ G ID + + ++ +YK+ Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + + + Q +Y L Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120 >gi|227325792|ref|ZP_03829816.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 720 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 117/722 (16%), Positives = 221/722 (30%), Gaps = 132/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIDHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + + LK ++ + + R Sbjct: 90 FHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLIRALNLDEKQWPPRQAMWFINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + Y+EA + ++DF +L++ ++L + + Sbjct: 150 KDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + +IL+DE QDT+ IQ+ IR L D + VGD+ QSIY + Sbjct: 207 LNHYRERFTNILVDEFQDTNRIQYAWIRILAGD----------SAKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + I L ++RST++IL + + + G + Sbjct: 257 RGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGGRLGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TDGAEGEPISLYCAFNELDE-------ARYV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I D +L R + ++ + Sbjct: 334 VNRIKAWQENGGAL----------SDNAILYRSNAQSRVLEEAL----LQQSMPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD +A R I ++ DD +F ++ +P + + + R T+++ Sbjct: 380 MRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + Q I+ I L + H + + G Sbjct: 440 STRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHIQTDRAIKDSGLWSMYEQEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + ++ L+E + T + Q L L + L + AN + V++MT+ Sbjct: 500 EKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VF+V +F + Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA +L I + K V + + Sbjct: 591 -----RLEEERRLAYVGVTRAMQKLTITYAESRRLYGKEAYHRPSRFVGELPEECVEEVR 645 Query: 698 IK 699 ++ Sbjct: 646 LR 647 >gi|114769364|ref|ZP_01446990.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255] gi|114550281|gb|EAU53162.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255] Length = 800 Score = 271 bits (693), Expect = 4e-70, Method: Composition-based stats. Identities = 107/657 (16%), Positives = 203/657 (30%), Gaps = 140/657 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 Y+ K DF DL+++ ++ + A I K +IL+DE QDT++ Sbjct: 197 EFYTQYQSRLKALNAADFGDLLLHVVNIFQNN---ADILEKYQNGFKYILVDEYQDTNVA 253 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ +R L R + VGD+ QSIY + GAE +LR +R + Sbjct: 254 QYMWLRLLAA----------KHRNICCVGDDDQSIYGWRGAEVGNILRFERDFE------ 297 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 ++ L ++RST DIL + + ++ G + LW Sbjct: 298 --GAKVVRLEQNYRSTPDILAAASGIIAGNKDRLGKT---------------------LW 334 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ + ++ ++D + AR + + + Sbjct: 335 -------TARKDGEKVRLIGHWDGEEE-------ARWVGEDLESYQRG-----TRGLPAF 375 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 + +LVR + + + I+D MA R +S Sbjct: 376 GLDSMAILVRASHQMRSFEDRF----LSIGLPYRVIGGPRFYERMEIRDAMAYFRVAVSP 431 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ----------------KFA 474 +D L+F ++ +P E I T R ++ E + + Sbjct: 432 DDGLAFERIVNTPKRGIGEKAQQLINTTARDHGVSMLEGARILLNEGGLSSKASNSLRKL 491 Query: 475 NCGISKFQHVI-----------KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523 G +++++I + + L + + S + IL + + Sbjct: 492 IDGFDRWKNLISNSNLANNTRSEILETLDNFSDKTSHVEIAQTILEESGYTDFWQNDKTP 551 Query: 524 EVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 E + L E + E + LE ++ S + +V IMT+H A Sbjct: 552 EAAGRLENLKELVKALEGFEN--------IQGFLEHVSLIMENDVSDSTEKVSIMTLHGA 603 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640 KGLE P+VFL +F + + Sbjct: 604 KGLEFPIVFLPGWEDGLFPSQRS--------------------------------MDESG 631 Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700 + EE RL YVG+TR+ I +N ++ + M L Sbjct: 632 QKGLEEERRLAYVGITRSEAVCTISFAAN----RRVYGQWQSSMPSRFIDELPADNIEVL 687 Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757 T + + + + +++ + + P + Sbjct: 688 TPPGLYGGNSSRQDIEFESDLPERAAKADAYNSPGWKRMQIRTSQRFLDSSETPQAV 744 >gi|165924171|ref|ZP_02220003.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334] gi|165916386|gb|EDR34990.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334] Length = 1110 Score = 271 bits (693), Expect = 4e-70, Method: Composition-based stats. Identities = 148/910 (16%), Positives = 305/910 (33%), Gaps = 138/910 (15%) Query: 61 CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112 + + +++ FLT++ +K + ++ ++ DL +L K+ ++ + Sbjct: 274 DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332 Query: 113 RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 T +++ L A ++ +DF ++ + L + Sbjct: 333 EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + ++D++I H+LIDE QDTS+IQ+ +I L + RTLF VGD QS Sbjct: 393 PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY F AE + L+ K + + + L +FRS +++ ++ F + Sbjct: 448 IYRFRQAEVRLFLQVKNE-----GLGEIQLTPLILRNNFRSQKNLIDWFNQTFEPTFPKE 502 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 S + + H ++ N + ++ S ++ +A Sbjct: 503 ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540 Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A +I I + K I +LVR R IT R I Sbjct: 541 ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 + L + I+DL++L R + D ++++ +L++P + D+ + ++ Sbjct: 586 AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645 Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 + G ++ + + + I A G + Sbjct: 646 WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705 Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580 + L + +L+ L +L Q I N ++IMT+H A Sbjct: 706 TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757 Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637 KGLE V L + S H + + I P S+ + + + L + Sbjct: 758 KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693 K+ T E RLLYV TRA + + N + K + ++ ++++ Sbjct: 818 IEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877 Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753 I +++ + + +++L + P L + + Sbjct: 878 EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESKP 921 Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808 P++ G++IH+ L+ I + Sbjct: 922 LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964 Query: 809 CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861 + +L + E ++ ++++ L + +S SE ++ + Sbjct: 965 QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020 Query: 862 IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916 I ID I + +I +YK+ + ++ H AQL Y Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALDS 1080 Query: 917 NKSLVCLLIY 926 + + L + Sbjct: 1081 -RPIKLGLYF 1089 >gi|162448187|ref|YP_001621319.1| DNA helicase II [Acholeplasma laidlawii PG-8A] gi|161986294|gb|ABX81943.1| DNA helicase II [Acholeplasma laidlawii PG-8A] Length = 703 Score = 271 bits (693), Expect = 4e-70, Method: Composition-based stats. Identities = 101/543 (18%), Positives = 174/543 (32%), Gaps = 110/543 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + Y N +LDF+DL I T L + I + N IL+DE QDT +Q Sbjct: 167 VLEKYTHELITNNLLDFDDLQILTYKLFDEH---QHILEYYQNKFNFILVDEFQDTDHLQ 223 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 +++++ L + LF VGD QSIY+F GA + Sbjct: 224 YKMMKLLAG----------KQKNLFVVGDPDQSIYAFRGANYDNAKFFLNDFKNE----D 269 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 + I L L++RST +IL +K+ + +N Sbjct: 270 GSKAEIVLDLNYRSTKEILKFANKLITSNKNRP--------------------------F 303 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + D + W++ D A+ IA I +I + Sbjct: 304 SKSLETDLGNGLKPFIWSAQSD--------LNEAQMIANEIETLIKDG---------GYK 346 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 DI +L R + + Y I V IKD++A R ++ Sbjct: 347 YSDIAILYRNNALSRSFEDVF----MKYNIPYVLYGGISFYQRKEIKDILAYIRLVVDPN 402 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ--KFANCGISKFQHVIKYIH 489 D + ++ +P + K+ + ++++ I + I Sbjct: 403 LDFYLMRIINTPRRAIGPTTLNKLQSYAKEHNMSMFDAIDSFDISGKTKQSLLEFKTLIL 462 Query: 490 EL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLN---FTLRNEQN 542 E+ F + Q + E I+ + E N + Sbjct: 463 EMKFDFQNFTELGKVVDYVAYKTGYNQMLETDKDEYSEERIEYIKELKNPFVQAEAYYEG 522 Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 ++ L++L+ L+Q + + V + T H KGLE VVF+ Q+F Sbjct: 523 TF--LEKLMQLLDQIALYSDLDRNKVSDAVVLSTFHQVKGLEFKVVFMTVMEEQIFPSSQ 580 Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662 + + EE R+ YVG+TRA ++L Sbjct: 581 SF----------------------------------MDLNELEEERRIAYVGVTRAKERL 606 Query: 663 IIC 665 + Sbjct: 607 YLT 609 >gi|166710261|ref|ZP_02241468.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzicola BLS256] Length = 728 Score = 271 bits (693), Expect = 4e-70, Method: Composition-based stats. Identities = 98/575 (17%), Positives = 190/575 (33%), Gaps = 120/575 (20%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + + + + + A Y+E ++ +LDF +L++ ++LL+ + Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 IL+DE QDT+ IQ+ +R L + +F VGD+ Q+IY + GA Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V R + + L ++RS+A+IL + V + G Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPERIGK----- 307 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 QLW + + ++ + + AR + Sbjct: 308 ----------------QLW-------TDSGDGGPIDLYAAYNEVDE-------ARYVVER 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ VL R + + ++ Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISAQLPYRVYGGMRF 383 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469 + IKD +A R + ++ DD +F + +P + + ++ R +++E Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 443 Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 A + + + +L + +L R+ + Sbjct: 444 LCTQQNTLAARARNALATFLSLVGQLHAETGEMELAERIDHLLMRSGLREHWAKESRGGL 503 Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + LDE ++ R + + EL++ L + A V++MT Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VFLV +F Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVG+TRA +L++C + Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624 >gi|294782871|ref|ZP_06748197.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA] gi|294481512|gb|EFG29287.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA] Length = 737 Score = 271 bits (693), Expect = 4e-70, Method: Composition-based stats. Identities = 105/545 (19%), Positives = 182/545 (33%), Gaps = 117/545 (21%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y ++ +DF D+++NT LL+ I KI ++ +I+IDE QDT+ + Sbjct: 169 EVYEKYNRNLIESNAMDFSDILLNTYKLLQNSS----ILEKIQKKYKYIMIDEYQDTNNL 224 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+++I + L VGDE QSIY F GA +L + + Sbjct: 225 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYKN----- 269 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 II+L ++RST+ IL +++ ++++ LW Sbjct: 270 ---AKIIKLEENYRSTSTILDAANELIKNNKSSKDKK---------------------LW 305 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 ++ + S +I I I Sbjct: 306 -------TQNGKGDLIKVLVCDNARDEVS-------KIIDIIKENHQNG----------I 341 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 KD+ +L R + + Y I IKD++A I++ Sbjct: 342 PYKDMTILYRTNMQSRVFEEGL----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 397 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 +D+L+ ++ P E I KI R + + + G K + Sbjct: 398 QDELNLQRIVNVPKRKVGEKGIEKIIAFARENNLNLLDALSHIKDISGLTATGKEKLSEM 457 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542 I EL ++ + +L K + I+ ++EF N L E Sbjct: 458 YDIIKELKDLSYSETASYIVETLLDKIKYIDYVKETYDDADARIENIEEFKNSILELE-- 515 Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601 + + L LE + +++MT+H +KGLE P+VFLV +++F Sbjct: 516 NVVGVLRLSEYLENVSLVSATDDLEDEKDYIKLMTIHNSKGLEFPIVFLVGFENEIFPG- 574 Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661 + EE RL YV +TRA + Sbjct: 575 ---------------------------------ARASFDEKEMEEERRLCYVALTRAEKK 601 Query: 662 LIICK 666 L + Sbjct: 602 LYLSH 606 >gi|293393896|ref|ZP_06638203.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582] gi|291423723|gb|EFE96945.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582] Length = 723 Score = 271 bits (693), Expect = 4e-70, Method: Composition-based stats. Identities = 103/580 (17%), Positives = 190/580 (32%), Gaps = 116/580 (20%) Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191 + Y+EA + ++DF +L++ ++L + I + +IL+DE QDT+ I Sbjct: 175 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNRI 231 Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251 Q+ IR L D + VGD+ QSIY + GA+ + + R + Sbjct: 232 QYAWIRLLAGD----------RANVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 275 Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311 + L ++RST++IL + + + + G + LW Sbjct: 276 --GAETVRLEQNYRSTSNILKAANTLIANNDGRMGKN---------------------LW 312 Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371 + S F+ L + AR + I + Sbjct: 313 -------TDGAEGEPISLYCAFNELDE-------ARFVVNRIKSWQDNGGAL-------- 350 Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431 D +L R + ++ + + IKD +A R I ++ Sbjct: 351 --NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGGMRFFERQEIKDALAYLRLIANR 404 Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484 DD +F ++ +P + + + R T+++ + A S Q Sbjct: 405 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQMTLWQATRALLQDKVLAGRAASALQRF 464 Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFTLRNE- 540 + + L H H ++ +Q G I+ L+E + T + Sbjct: 465 SELVDALAHETADMPLHVQTDRVIRDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSY 524 Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 Q+ L L + L + A + V++MT+H+AKGLE VF+V +F Sbjct: 525 QDEDQDLMPLQAFLSHAALETGEGQADAYQDAVQLMTLHSAKGLEFKQVFIVGVEEGMFP 584 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + EE RL YVG+TRA Sbjct: 585 SQMSLDEGG----------------------------------RLEEERRLAYVGLTRAM 610 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699 ++L + K + + +++ Sbjct: 611 EKLTLTYAETRRLYGKEVYHRPSRFIGEIPEECIEEVRLR 650 >gi|307944882|ref|ZP_07660219.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4] gi|307771806|gb|EFO31030.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4] Length = 801 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 109/665 (16%), Positives = 204/665 (30%), Gaps = 115/665 (17%) Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190 + L Y+E DF DL+++ L K + + + ++L+DE QDT++ Sbjct: 208 RKLYEEYQERLSILNAADFGDLLLHVITLFKTQPD---VLANYQRRFRYMLVDEYQDTNI 264 Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250 Q+ +R L + + VGD+ QSIY + GAE +LR + Sbjct: 265 AQYLWLRLLAQ----------GNPNVCCVGDDDQSIYGWRGAEVDNILRFEHDF------ 308 Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310 + +++ L ++RST+ IL + + E G + + Sbjct: 309 --KGATVVRLERNYRSTSHILAAASHLIAHNEGRLGKTLFTDFH---------------- 350 Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370 + + S S +DS + AR I I + G + + Sbjct: 351 ----------EPDHDLVSVASVWDSEEE-------ARTIGDEIQALQGKEHSLNQ----- 388 Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430 I +LVR L ++ + + I+D +A R ++ Sbjct: 389 -----IAILVRASFQMRSFEDRFVTL----GLNYRVIGGPRFYERMEIRDALAYFRCVVQ 439 Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQH 483 DL+F ++ +P + + + R + + + + K ++ Sbjct: 440 PAYDLAFERIVNTPKRGLGDASLKLVHGLARANRIPLMQAADQLSQTEELKPKPRNTLKN 499 Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543 ++ + + +IL + + E LD E+ Sbjct: 500 LLVDFERWRGQLETMKHTELAEIILDESCYTEMWRKDRSAEAPGRLDNLKELIRSMEE-- 557 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 + + LE + R + V IMT+H+AKGLE VFL +F H+ Sbjct: 558 ---FESMAGFLEHISLVMDRDGADEQEAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 614 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 ++ EE RL YVG+TRA + Sbjct: 615 LD--------------------------------ESGRAGLEEERRLAYVGITRARKRAK 642 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723 + SN + + + + + + Sbjct: 643 LYFASNRRIHGQWQNSIPSRFLDELPAEHVEIAEPSTSYGGYGGGGYGPSRFDRADSFER 702 Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783 Q K + P TI+ G+ +S+ D F+ G Sbjct: 703 GSYSTPGWQRAQRAKTSSGNSYGQDLKSSRAKRQGPLTIE--GELVAKSVSDDPSAFSLG 760 Query: 784 -LIIH 787 + H Sbjct: 761 ERVFH 765 >gi|238918750|ref|YP_002932264.1| exonuclease V subunit beta [Edwardsiella ictaluri 93-146] gi|238868318|gb|ACR68029.1| exodeoxyribonuclease V, beta subunit, putative [Edwardsiella ictaluri 93-146] Length = 1199 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 122/877 (13%), Positives = 259/877 (29%), Gaps = 122/877 (13%) Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + L + + K++ L F+DL+ + Sbjct: 317 RHSVFTEIESLLAEPLSLRDLVLARALGEIRDGVQLEKRRRAELGFDDLLTRLDQA-LGG 375 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 A + I Q +IDE QDT +Q+ + + + + SS L +GD K Sbjct: 376 AGGAALAAAIRQRYPVAMIDEFQDTDPLQYRIFQRIY----TADDARSSETALLLIGDPK 431 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 Q+IY+F GA+ LR + L ++RS ++ V+ +F E Sbjct: 432 QAIYAFRGADIFTYLRARAAVDA----------CYTLETNWRSAPGVVQAVNALFLRLEA 481 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 +E + ++ G+ T+ D + W + Sbjct: 482 PFLFAEIPFLPVASAAANAGRRLTI----------DGEPQSAMALWLYDVPGCTAQEYLQ 531 Query: 344 ILARRIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395 +AR A I + + R + A D+ +LVR R + ++ Sbjct: 532 TMARCCAAQIRDWLSAGQRGTARLTGGDDGKAGRALCAADMTILVRSRHEATVMRDALSA 591 Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455 L SV ++R + +DL+ L + IL+ + L L + Sbjct: 592 LNIP---SVYLSNRDSVFSTPEARDLLWLLQAILTPAQSRTLRSALAVGLLGLDAAALDA 648 Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 + + V + + + V+ + ELI + +L G + Sbjct: 649 LSQDERRWDAVVDEFDGYRRQWQR--RGVLPMLRELIGRRR------LAENLLATAGGER 700 Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEV 572 + L E L + + ++ L +++ + + ++ + V Sbjct: 701 RLTDVL------HLGELLQEAAAQLDSEPALVRWLAQQIDSPQPQAESQQMRLESDRHLV 754 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +++T+H +KGLE P+VFL + + + + D Sbjct: 755 QVITIHKSKGLEFPLVFLPFVATFRRQRQGLYHDRVTHQAVLDLCAD------------- 801 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQL------IICKHSNTSNEKKSNQRTWYDMVY 686 D + + E RLLYV +TRA ++ + +E + ++ Sbjct: 802 DDALALADQERLAEDLRLLYVAVTRAVYHCALGIAPLVSGNRRKQDESDLHHGAIGYLLQ 861 Query: 687 DSFHNDERVKKIKLTNSINKDEWIAY--EWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744 + D K L N + + P+ + + Sbjct: 862 RAEACDAEGLKQALQTLSNDPIHLEILSPCEGTPWQAEPVPPRALCARRFTRRLQDDWRV 921 Query: 745 SPIKN----------DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794 + ++ ++ + + + S + + G +H LL+ + Sbjct: 922 TSYSALQQHGGSTYLELLPRLDIDAAGENRTAAATIFSAHTFPRGAAPGTFLHDLLEKLD 981 Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSYSEVSV 851 + L L I + + ++ E+ Sbjct: 982 FAAAPDPVWLAEQCLAQGIDLAWVPTLAQWLTQILQTPLDESGLTLSHLAPSQRQPELQF 1041 Query: 852 SGKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKT 885 I P + + ++ G ID + + ++ +YK+ Sbjct: 1042 YLPIARPLRAEALDALIRRHDALSAQCEALAFSQVEGMLKGFIDLVFCHRGRYYLLDYKS 1101 Query: 886 HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913 + I + + Q +Y L Sbjct: 1102 NWLGEDRAAYTPPAMAAAMIAHRYDLQYQLYTLALHR 1138 >gi|253687310|ref|YP_003016500.1| exodeoxyribonuclease V, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753888|gb|ACT11964.1| exodeoxyribonuclease V, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1194 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 129/873 (14%), Positives = 282/873 (32%), Gaps = 126/873 (14%) Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165 + DR + L + + E K++ L F+DL+ + L++ Sbjct: 317 ALFEETDRLLATPLSLRDLVIVRALSAIRESVSEEKRQRAELGFDDLLSRLDVALQQPG- 375 Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225 + I + +IDE QDT Q+ + R+L L +GD KQ+ Sbjct: 376 GERLASAIRERYPVAMIDEFQDTDPQQYRIFRTLY--------VGQPQCGLLLIGDPKQA 427 Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 IY+F GA+ + + G+ + L ++RS+ ++ V+++F E Sbjct: 428 IYAFRGADIFTYMHAR----------GEVAAHYTLGTNWRSSHQMVHGVNRLFERLEYPF 477 Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345 ++ S+ G +V + + P + W + + + + Sbjct: 478 IFQNIPFLPVKPAESKRG----------LVFEVAGKPQPALQFWLTGSEPIGIGDYQQRM 527 Query: 346 ARRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400 AR+ A I + + + +R+++A D+ VLVR R++ LI L Sbjct: 528 ARQCAAQIRDWLAASQRNEAWLVTDDSQRLVKASDMSVLVRSRREASLIRDALSRLSIP- 586 Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460 SV ++R + D++ L + +L+ E + + + + L + + Sbjct: 587 --SVYLSNRDSVFSTPEASDMLWLLQAVLAPEQERTLRSAMATALMGLDAGQVDAL---- 640 Query: 461 HETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 ++ET ++ + + ++ ++ + L+ H +L + +G ++ Sbjct: 641 GQSETAWDALVDEFAGYRALWRQKGILPMLRALMSR------HQLAENLLASAEGERRLT 694 Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575 + E L L +E L + I + + ++ + V+I+ Sbjct: 695 DIL------HIGELLQDASATLDSEHALVRWLSQQIVQPNPQAENQQLRLESDRHLVQIV 748 Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635 T+H +KGLE P+V+L + I D + Sbjct: 749 TIHKSKGLEYPLVWLPFISHFRVQDQGIYHDRESYQAVLDLQN-------------HEES 795 Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD-----MVYDSFH 690 ++ E RLLYV +TR+ + + KK + ++ Sbjct: 796 QTLAEEERLAEDLRLLYVALTRSIYHCSVGVAPIQRSRKKDGSSDMHQSALGYLLQRGKE 855 Query: 691 NDERVKKIKLTNSINKDEWI-------AYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 + +L + + W PE L +QL D ++ Sbjct: 856 AEAATLVSELEGMVGDGVALTPLQATEEQRWQPDRPELAELRARHIERQLRDGWRVTSYS 915 Query: 744 F-----SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798 S D+ + +G + + + + G +H L + + Sbjct: 916 GLQQHGSAGAQDLVPRLDIEAIGERQEGDETQLTPHTFPRGASPGTFLHSLFETLDFTQP 975 Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKI 855 + + K + ++ + N ++ + D +E+ I Sbjct: 976 VDDGWLAEQLQLQGFEAHWQPVLKAWMNTLLQTPLNEQGITLSALDNADKQAELQFYIPI 1035 Query: 856 NCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHV 889 P + ++ G ID + + ++ +YK++ Sbjct: 1036 EAPIQAAQLDRLAKHHDPLSARCPALSFQQVKGMLKGFIDLVFRWEGRYYLLDYKSNWLG 1095 Query: 890 PQEIEHIP---------YTHIAQLSIYEKILKD 913 P + + + Q +Y L Sbjct: 1096 PDASAYTQTAMMQSMAEHRYDLQYQLYTLALHR 1128 >gi|300724824|ref|YP_003714149.1| exonuclease V subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297631366|emb|CBJ92061.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Xenorhabdus nematophila ATCC 19061] Length = 1238 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 139/924 (15%), Positives = 273/924 (29%), Gaps = 154/924 (16%) Query: 86 TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145 T++ N L E + + ++D + + + + K Sbjct: 312 TKKGNAPQHSLFEAIDDLYQLPLTLKDIIVARAIIE-----------VRQSVHQEKLMRG 360 Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 + F+DL+ + L+ + + I +IDE QDT Q+ + +++ Sbjct: 361 HMGFDDLLTRLDSALQ-HEGGEQLAEAIRLRYPVAMIDEFQDTDPQQYRIFQAIYRCQPE 419 Query: 206 ------------GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 S L +GD KQ+IY+F GA+ +R + T Sbjct: 420 DALPESQLPENRPAENQSLKNGLLFIGDPKQAIYAFRGADIFTYIRARSNVSAHYT---- 475 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 L ++RS+A ++ V+K+FS E + ++ + + Sbjct: 476 ------LETNWRSSAPMVYAVNKLFSCTERPFLFEQIPFIHVK----------AAEKNQG 519 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368 + + W + + + +AR A I + + + K Sbjct: 520 LKFSLHDEEQVALRFWLQPGEGVSKGEYEQSMARLCAAQIRDWLQAGQDGKALLHQAEKS 579 Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428 R + A DI VLVR R++ LI LK SV ++R + D KDL+ L + + Sbjct: 580 RPVVAADITVLVRDRREASLIRNELNTLKIP---SVFLSNRESVFDTPEAKDLLWLLQAV 636 Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488 L+ E L S LF S I ++ + + + +A S+ Sbjct: 637 LAPEKARELRSALASSLFGLSAQQIDQLNRDETAWDHLVDEFDGYARIWRSR-------- 688 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN---EQNSYS 545 L + + +L ++G ++ + E L + E Sbjct: 689 GVLPMMRAVMVKYQIAENLLAGEEGERRLTDIL------HIGELLQEASQQLDSEHAVAR 742 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L + IS ++ + V+I T+H +KGLE P+V L + Sbjct: 743 WLAQQISRPNAQSEAQLMRLESDRHLVQICTIHKSKGLEYPLVCLPFICGYRKQKQ---- 798 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++ D + + ++ + E RLLYV +TR+ I Sbjct: 799 -----AVYHDRHNFETHLSISHDDEELKAALELADEERLAEDLRLLYVALTRSVYHCSIG 853 Query: 666 KHSNTSNEKKSNQRTWYD------------------MVYDSFHNDERVKKIKLTNSINKD 707 K T +V + +I+ I Sbjct: 854 VAPLIKGRKSKEGETDLHLSALGYVLQKGQKGDAALLVSSLNELSDENIEIEWVGEIADA 913 Query: 708 EWIAYEWSTHHPENTPLE--------------------REETIKQLMDEQKIPKKLFSPI 747 +W + + E + R + L + I Sbjct: 914 QWCSQNENHLSLEARRFQRSIRDDWRVTSYSGLQYSASRAISQAALDHRAGALSESVDVI 973 Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807 I ++ ++ L + + + + G +H +L+ I + Sbjct: 974 VQSIAPKLDIDARGEKQAAQSLLMTPHTFPRGASAGTFLHSILEDIDFGHPPNQAWLSEK 1033 Query: 808 YCTKNAKLWPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVS------------ 852 T A + + I R L + + SE+ Sbjct: 1034 LITSGFDENWAPILEQWVDDILRAELNDQGMQLADIPRHQQQSEMQFYLPVDKLLHSTEM 1093 Query: 853 --------------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898 + + ++ G ID + Q ++ +YK++ + Sbjct: 1094 DALTRRYDPLSAQCAPLAFHQVKGMLKGFIDLVFCWQDKFYVVDYKSNWLGESSQSYTQE 1153 Query: 899 ---------THIAQLSIYEKILKD 913 + Q +Y L Sbjct: 1154 AMANAMIEHRYDLQYQLYSLALHR 1177 >gi|171319519|ref|ZP_02908620.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] gi|171095259|gb|EDT40249.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] Length = 787 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 117/748 (15%), Positives = 224/748 (29%), Gaps = 161/748 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + + + K ++ K Q ++ Sbjct: 96 LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + +T L Y++ ++ V+DF +L++ +LL A +R Sbjct: 150 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F GA Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 256 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + R ++I+L ++RS +IL +++ S + G + + Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V+++ + S+ + A I Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDAQEAGWIVEE 333 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++I T + ++ VL R + I I Sbjct: 334 IRSLINTG----------MSRSEVAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGLRF 379 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + +K +A R I + DD +FV ++ P I ++ R ++ I Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFVRVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + I ++ Q S + ++ A + R G + ++ L Sbjct: 440 YVTGKAGTSLGGFATLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLENLQ 499 Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549 E +N L Sbjct: 500 ELVNAATAFVSEEGYGLDAPARSIPLRAGAIAAPELGVDASDPSVDVLDPAPLDDPAQNP 559 Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L L A + V++MTVH AKGLE VF+ +F H++ Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 619 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 L+ EE RL+YV +TRA ++L Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645 Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + + + N R+ + K++ + A Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGWGRDWFSRP 705 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749 RE+ + + + Sbjct: 706 GGGSREQVVDAAVSAPLPAFANKQRAAD 733 >gi|170702107|ref|ZP_02893019.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] gi|170132982|gb|EDT01398.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] Length = 787 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 117/748 (15%), Positives = 224/748 (29%), Gaps = 161/748 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L+ + + + F +L + + + K ++ K Q ++ Sbjct: 96 LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + +T L Y++ ++ V+DF +L++ +LL A +R Sbjct: 150 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 HIL+DE QDT+ +Q+ ++ L +FAVGD+ QSIY+F GA Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 256 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + R ++I+L ++RS +IL +++ S + G + + Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 G V+++ + S+ + A I Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDAQEAGWIVEE 333 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++I T + ++ VL R + I I Sbjct: 334 IRSLINTG----------MSRSEVAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGLRF 379 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471 + +K +A R I + DD +FV ++ P I ++ R ++ I Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFVRVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439 Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530 + I ++ Q S + ++ A + R G + ++ L Sbjct: 440 YVTGKAGTSLGGFATLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLENLQ 499 Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549 E +N L Sbjct: 500 ELVNAATAFVSEEGYGLDAPARSIPLRAGAIAAPELGVDANDPSVDVLDPAPLDDPAQSP 559 Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 L L A + V++MTVH AKGLE VF+ +F H++ Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 619 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 L+ EE RL+YV +TRA ++L Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645 Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721 + + + + N R+ + K++ + A Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGWGRDWFSRP 705 Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749 RE+ + + + Sbjct: 706 GGGSREQVVDAAVSAPLPAFANKQRAAD 733 >gi|260440441|ref|ZP_05794257.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] gi|291043739|ref|ZP_06569455.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] gi|291012202|gb|EFE04191.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] Length = 671 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 112/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T + + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNVWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +I+L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392 + A + I +IG D + D VL R + + Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------RYADFAVLYRGKHQARIFEEA 361 Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452 R +I + D IKD+++ R + + DD +F+ + +P + Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417 Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505 + K+ ++YE Q N Q + A+ +F Sbjct: 418 LGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKAEIDEAGEFIN 477 Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561 +L + G + E +++ R + ++ EL + Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELAQTVALMTLLE 537 Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621 + + V + T+H AKGLE P VFLV V H Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576 Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681 +++ EE RL+YVG+TRA QL + + Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621 Query: 682 YDMVYDSFHND 692 + + D Sbjct: 622 SRFIDEMPQED 632 >gi|294507833|ref|YP_003571891.1| ATP-dependent exoDNAse [Salinibacter ruber M8] gi|294344161|emb|CBH24939.1| ATP-dependent exoDNAse [Salinibacter ruber M8] Length = 1141 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 147/974 (15%), Positives = 291/974 (29%), Gaps = 108/974 (11%) Query: 7 LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET------GNPTILKKAQTLQQASQTQ 60 L + DL ++++ + + + +A+ L + + Sbjct: 203 LDPYVNAPDTVPDLTQAAAAVRAELDAWQARCPDALPEGRDDAMQAFDRAERLIAQTGVE 262 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 +R LL F ++ + D + + +DE + R Sbjct: 263 TPAQRAELLE-LFAGVADEESADVTLKCWRGPHTDAYDWARTLRDEHLPALVRDVVQPAL 321 Query: 121 KSTLA-----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175 + A + + + ++ L F DL+ T DLL+ +R I + Sbjct: 322 RRWRAYVHEEVVAFVRPAVERFASLRQAEGRLTFHDLLACTRDLLRDHPG---LRTTIQE 378 Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 +L+DE QDT +Q E++ LT + P +LF VGD+KQSIY F A Sbjct: 379 RHPRLLVDEFQDTDPLQAELLFYLTSRNPTETTWTDCRPLPGSLFIVGDDKQSIYRFRRA 438 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + + + L +FRS I D F + L + Sbjct: 439 DMEVFEAVGERIE------DTGGEAVMLTKNFRSLDVICDWCDAAFGALFDDADLMDRQA 492 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 T R + + + A+ A RIA Sbjct: 493 TYTPFDPQRT---------------TERDVDGVRRINLDKVRGNWGTDIAAQDAGRIARF 537 Query: 353 ISNMIGTDTIFSNGKKRVI------QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406 I + D L+L R + + I Sbjct: 538 IQGARDGGRSGRGADRHGALFAGGADYSDFLILTRTKSRLSVYAEALAE----RGIPYTV 593 Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466 L + +K L+ L L +D+++ V LK PL S+DD+++ E + Sbjct: 594 TGSEDLGEAAELKALVDLLTCALRPDDEVACVAYLKGPLVGASDDDLYRFSRAGGEFGRM 653 Query: 467 YE-----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--- 518 +E ++ + +F+ ++ P ++ Sbjct: 654 HEPVPASVLEALPHETAQRFEEAFGHLRAARRRLHEQRPGVAIEQLIDDLGLLAGAAHPP 713 Query: 519 -SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA----HSANHNEVR 573 + G+ + + + + L + + + VR Sbjct: 714 DAAEGSLRAGRVLRTITYVQDLAAQGLGWAEVLDELQRVVDGEEEVDGMTLETGGDDAVR 773 Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP--------GIPIWIPQS 625 +M VH AKGLE+PVVFL D S+ + + P P Sbjct: 774 VMNVHQAKGLEAPVVFLADPYSRSGGPSVRRHLRREAGELVAPIVQGSGYRERVTHPPLG 833 Query: 626 KSRN--NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 R + ++ E RLLYV TRA + L++ + ++ Sbjct: 834 WERPVDGRDESFRESEERHEAAEERRLLYVAATRAQNLLVVSTYPEKPDDGP-------- 885 Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743 + + A S P ++ + + Sbjct: 886 -------WAPLYPHLDAADVPELGRPDAEPSSDRPEAPAPALTDQRAGRDAQLEAQ---- 934 Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHK-- 800 + P S D + + S L+ G IH+LL+ Sbjct: 935 --------SRPSYRTESVTDGDRASPVRSSLASEGYGEAFGSAIHQLLEQCVRTGRPTPW 986 Query: 801 -RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCP 858 ++ S + + + R L++ + + D Y+E ++ + Sbjct: 987 TDESVAASVLERTGAPNTPDAVERATTMVQRFLDSRVWARVQAADRVYAEYPIAHAVR-R 1045 Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP--YTHIAQLSIYEKILKDSYP 916 + ++ G ID + + ++KT + E + + ++ QL Y + Sbjct: 1046 ETPVVRRGVIDLAWRADGRWTLVDHKTDRVQGRPPETLSPDHAYVQQLQAYARAWTAVV- 1104 Query: 917 NKSLVCLLIYVSEP 930 N+ + + +++++ Sbjct: 1105 NEPVAEVGLWLADA 1118 >gi|307638133|gb|ADN80583.1| ATP-dependent DNA helicase [Helicobacter pylori 908] gi|325996733|gb|ADZ52138.1| ATP-dependent DNA helicase /epsilon proteobacterial type 2 [Helicobacter pylori 2018] gi|325998327|gb|ADZ50535.1| putative ATP-dependent DNA helicase [Helicobacter pylori 2017] Length = 681 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 94/564 (16%), Positives = 180/564 (31%), Gaps = 118/564 (20%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y+ A KK+ ++DF+DL+ + +L+ + + + + ++I++DE QDT+ +Q Sbjct: 158 YELYQNALKKDNLVDFDDLLCLSLKILQDNE---KLAKETSERYHYIMVDEYQDTNALQL 214 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E ++ L+ + L VGD+ QSIY F GA+ +L + + Sbjct: 215 EFLKQLS----------CAHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 +++L ++RS+A+IL + + S ++ + S + Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHIKTLQSFKGSHKSVVCKEYPTQKE---- 312 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + +AY I ++ N Sbjct: 313 -------------------------------ESLDVAYQIKALLKKGENLEN-------- 333 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 I +L R + I L I + +KD +AL ++D Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALALMHVAAKKDD 387 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486 +L P + I + E + + K + + Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDEEGLNLEEALKLGAFKDKLNPKNEYALKKFMA 447 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545 I L A S F L + + E + E L+ + + + + Sbjct: 448 MIGHLRE-AFEISVEKFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506 Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605 L+ L + + + N +V M+VH +KGLE VF++ F H Sbjct: 507 --HSLLDFLNESTLDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557 Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 ++S EE RL YV +TRA + L + Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587 Query: 666 KHSNTSNEKKSNQRTWYDMVYDSF 689 S + + + ++ Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQ 611 >gi|15646087|ref|NP_208269.1| DNA helicase II (uvrD) [Helicobacter pylori 26695] gi|2314653|gb|AAD08516.1| DNA helicase II (uvrD) [Helicobacter pylori 26695] Length = 682 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 99/573 (17%), Positives = 184/573 (32%), Gaps = 120/573 (20%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 Y+ A KK+ ++DF+DL+ + +L+ + I + + ++I++DE QDT+ +Q Sbjct: 159 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 215 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 E ++ L+ + L VGD+ QSIY F GA+ +L + + Sbjct: 216 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 257 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I++L ++RS+A+IL + + S ++ + +S + V Sbjct: 258 GAKIVKLETNYRSSAEILACANSLISHNQHRHIKT--------LQSFKGSHKSVVCKEYL 309 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 + +AY I ++ N Sbjct: 310 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 334 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 I +L R + I L I + IKD +A + ++D Sbjct: 335 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGALSFYERAEIKDALAFMHLVAKKDD 388 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486 +L P + I + E + + K + I Sbjct: 389 RFFIKRVLNKPPRGLGKITQEWIFSLLDEEGLNLEEALKLGAFKDKLNPKNEYALKQFIA 448 Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSY- 544 I L A S +F + L + + E + E L + + Sbjct: 449 MIGRLRE-AFEISVEEFCSRFLEETNLLKSYEKEDNYEEREGFVKELLTLVKEYFKTNPT 507 Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604 SL + ++E N +V M+VH +KGLE VF++ F H Sbjct: 508 HSLLDFLNESVLDAHNT-----ENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH---- 558 Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 ++S EE RL YV +TRA ++L + Sbjct: 559 -------------------------------RGFNQESDLEEERRLAYVAITRAKEELQL 587 Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 S + + + ++ ++ Sbjct: 588 SYVKERSYFGRKISCSPSVFLEEAQLLNQDNPP 620 >gi|325201855|gb|ADY97309.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240149] gi|325208393|gb|ADZ03845.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis NZ-05/33] Length = 671 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 112/609 (18%), Positives = 202/609 (33%), Gaps = 116/609 (19%) Query: 97 KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154 KE + K+Q + ++ T + T A + A Y+E + +DF+DLI Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186 Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214 LL++ + +R K + + ++L+DE QDT+ Q+ +++ LT + Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233 Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274 AVGD+ QSIY++ GA + + + + + +++L ++RSTA IL + Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 285 Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334 +KV LW Q+ + Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313 Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394 + A + I I I + Q D VL R + + R Sbjct: 314 ---ACQNEQHEADWVVSQI---IKQKLIGGDKT----QYADFAVLYRGKHQARIFEEALR 363 Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454 +I + D IKD+++ R + + DD +F+ + +P + + Sbjct: 364 ----GVRIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVTLG 419 Query: 455 KICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507 K+ HE E E + N Q + A+ +F + Sbjct: 420 KLNAYAHEHECSLYEAAQTEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFINSL 479 Query: 508 LGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563 L ++ G + + +++ R ++ EL + + Sbjct: 480 LEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLEGK 539 Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623 + V + T+H AKGLE P VFLV V H Sbjct: 540 D-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN---------------------- 576 Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683 +++ EE RL+YVG+TRA QL + + Sbjct: 577 -------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEPSR 623 Query: 684 MVYDSFHND 692 + + D Sbjct: 624 FIDEMPQED 632 >gi|148244458|ref|YP_001219152.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus Vesicomyosocius okutanii HA] gi|146326285|dbj|BAF61428.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus Vesicomyosocius okutanii HA] Length = 717 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 98/544 (18%), Positives = 186/544 (34%), Gaps = 112/544 (20%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 + YE K N ++DF +L+I + + + + HILIDE QDT++IQ Sbjct: 174 VFELYEVHCKTNELIDFAELLIRSYE---LLKNNVNLLNHYKNRFKHILIDEFQDTNMIQ 230 Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252 ++ I+ L S +F VGD+ QSIY + GA + + + Sbjct: 231 YKWIKLLF----------SGNNKVFCVGDDDQSIYGWRGANIENITKLCTDF-------- 272 Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312 I L ++RST +ILT + + + + G S LW Sbjct: 273 VPIKTIRLEQNYRSTNNILTASNALIAHNTSRMGKS---------------------LW- 310 Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372 + + + + + A + +I +I + Sbjct: 311 ------TNAIDGELIDMYEAQTEIDE-------ADYVVSSIQKLITNG----------VL 347 Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432 D +L R + + + Y I + + IK ++ R I + + Sbjct: 348 PNDCAILYRLNTQSRIFEEVL----IKYNIPYIIYGGLKFFERAEIKHALSYLRLIENSD 403 Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK----FANCGISKFQHVIKY 487 D+L+F ++ P I KI ++ ++++ + + + Sbjct: 404 DNLAFERVVNFPTRGIGNTTINKIRIFAQNNHVSLFQATIQVSSTLSTRTTNALNGFTNL 463 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547 I ++ + + + +L + + + + L+E + + +QN+ + Sbjct: 464 IEKMKDDTKNLNLSEKIVNLLNMSGLMAHYSNDKTSNKKENLEELITAAKQYKQNN--DM 521 Query: 548 QELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 E+I + + N V++MT+H+AKGLE P VFL + ++ K Sbjct: 522 NEIIGFISLASIDSGGNTNTLTNQNVQLMTMHSAKGLEFPYVFLSGMEEGLSPYRQSKN- 580 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 K +E RL YVGMTRA +L + Sbjct: 581 ---------------------------------KPHLIDEERRLCYVGMTRAMKKLSLSY 607 Query: 667 HSNT 670 Sbjct: 608 TMKR 611 >gi|119356509|ref|YP_911153.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM 266] gi|119353858|gb|ABL64729.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM 266] Length = 734 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 111/583 (19%), Positives = 193/583 (33%), Gaps = 118/583 (20%) Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157 L Q + ++ F + F+ + +A + Y ++N LDF+DL+I Sbjct: 138 LNTLQGIISRAKNSFILPEEFRRSAGDYNQQIAAKVYDLYTRKLRENNALDFDDLLIKPL 197 Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217 +L ++ + + + ++LIDE QDT+ Q+ + L+ R +F Sbjct: 198 ELFREHPM---VLEALQDTFRYLLIDEYQDTNKAQYLAAKMLSA----------KHRNIF 244 Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277 VGD+ QSIYS+ GA+ +L + +L ++RST IL + V Sbjct: 245 VVGDDAQSIYSWRGADISNILNFQDDY--------TDALTFKLVENYRSTGTILQAANSV 296 Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337 L + + HRS+ +L Sbjct: 297 IRNN-----LRQIKKELVSHRSAGDPL------------------------------TLI 321 Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397 + + A +I I ++ ++ + + V R + ++ L R Sbjct: 322 EARNERHEAEKIGEYIHSI---------RIEKGYEFRSFAVFYRTNAQSRVLEDLMR--- 369 Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457 +I IKD +A RF+L+ D S + ++ P E I K+ Sbjct: 370 -QNRIPYKIFGSVSFYKRKEIKDAVAYLRFLLNDRDSESLLRIINFPPRKIGETSIGKLR 428 Query: 458 T-QRHETETVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511 E T+YE I + + I L +A+ + + T + Sbjct: 429 EFAEAEGITLYEAITRADEGQFQSRLVNSLKGFSSLIEALRLLAETGTVYAVLTELFSLT 488 Query: 512 KGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568 E + L E L+ N+ L LE S + Sbjct: 489 SIPLLLKEENTAESLARHENLQELLSMARDFSDNN-PDQGSLGDFLETISLASNYDESQD 547 Query: 569 HNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627 + V +MTVH +KGLE PVVF+ ++F Sbjct: 548 SDNYVSLMTVHASKGLEFPVVFITGLEERLFP---------------------------- 579 Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 + + EE RL YV MTRA +++ + Sbjct: 580 --------LNCYEPEQLEEERRLFYVAMTRAQEKIFLSWAQTR 614 >gi|21233448|ref|NP_639365.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770412|ref|YP_245174.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. 8004] gi|21115293|gb|AAM43247.1| DNA helicase II [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575744|gb|AAY51154.1| DNA helicase II [Xanthomonas campestris pv. campestris str. 8004] Length = 728 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 97/575 (16%), Positives = 189/575 (32%), Gaps = 120/575 (20%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + + + + + A Y+E ++ +LDF +L++ ++LL+ + Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 IL+DE QDT+ IQ+ +R L + +F VGD+ Q+IY + GA Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGHVFVVGDDDQAIYGWRGA 260 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V R + + L ++RS+A+IL + V + + G Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 QLW + + ++ + + AR + Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 337 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ VL R + + + Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEALIAEQL----PYRVYGGMRF 383 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IKD +A R + ++ DD +F + +P + + ++ R +++E Sbjct: 384 FERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 443 Query: 472 KFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 + + + +L + +L R+ + Sbjct: 444 LCTQENTLAARARNALATFLSLVGQLQAETGEMDLAERIDHVLMRSGLREHWAKESRGGL 503 Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + LDE ++ R + + EL++ L + A V++MT Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VFLV +F Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVG+TRA +L++C + Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624 >gi|326559747|gb|EGE10157.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 7169] Length = 689 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 104/601 (17%), Positives = 203/601 (33%), Gaps = 126/601 (20%) Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + N+ E + + +K+ +++ I +D T + L YE Sbjct: 139 RDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLDDPEDLGFVH-----LYELYERN 193 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + +DF+DLI +L++ ++ K I ++L+DE QDT+ Q+E+I+ L Sbjct: 194 LRAYNAVDFDDLIAMPVRILRESHE---VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLV 250 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 VGD+ QSIY++ GA+P+ + K+ +++L Sbjct: 251 GRL----------GRFTVVGDDDQSIYTWRGAKPENMALLKQDFPN--------LEVVKL 292 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST IL + V + E+ S LW Sbjct: 293 EQNYRSTNHILGAANAVIANNEHMFEKS---------------------LW-------SD 324 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + + ++ + + + A R+A I ++ + VL Sbjct: 325 KGDGEKIRVITCNNDFDE-------AERVAKEI---------LTHRLRNNQTWDRYAVLY 368 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + R L+ I + IKDLM R I++ +DD +F+ + Sbjct: 369 RSNFQARALEAQLRQLE----IPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRV 424 Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI--SKFQHVIKYIHELI----- 492 + +P + K+ ++ + +K +I+ E I Sbjct: 425 INTPKRGIGSVTLEKLGLFAQHCGTSLLGACTRAGVKDALGAKAGAIIESFGEFINYYTH 484 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543 + P ++ N +D ++ R + Sbjct: 485 QLHDNSDPMPLVRQMITETGYIDYVKESSKNPQQEKGRLDNIEALYLSIAALINRADDEH 544 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++ +I ++ ++ N N+V +MT+H AKGLE V+++ ++ H + Sbjct: 545 DKTIDAVIRKMVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYVYIIGCEEKLLPHVNS 604 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + EE RL+YVG+TRA +L Sbjct: 605 IMS-----------------------------------ANIEEERRLMYVGITRAKSELT 629 Query: 664 I 664 + Sbjct: 630 L 630 >gi|238760176|ref|ZP_04621323.1| DNA helicase II [Yersinia aldovae ATCC 35236] gi|238701612|gb|EEP94182.1| DNA helicase II [Yersinia aldovae ATCC 35236] Length = 720 Score = 271 bits (692), Expect = 5e-70, Method: Composition-based stats. Identities = 115/700 (16%), Positives = 221/700 (31%), Gaps = 144/700 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110 F L+ L + + + + + D ++L+ + + Sbjct: 90 FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143 Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163 + + + Y+EA + ++DF +L++ ++L + Sbjct: 144 WYINGKKDEGLRPKHIESYGNPIEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203 Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 I + +IL+DE QDT+ IQ+ IR L D + VGD+ Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----------RSNVMIVGDDD 250 Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 QSIY + GA+ + + R + I L ++RST++IL + + + + Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILKAANTLIANNDG 302 Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343 G + LW + S F+ L + Sbjct: 303 RMGKN---------------------LW-------TEGAEGEPISLYCAFNELDES---- 330 Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403 R + I D +L R + ++ + Sbjct: 331 ---RFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373 Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462 + IKD +A R I ++ DD +F ++ +P + + I R Sbjct: 374 YRIYGGQRFFERQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVIRQTARDR 433 Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516 T+++ + A S Q ++ + L + H ++ Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLANETADMPLHVQTDRVIRDSGLWSM 493 Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571 + G + ++ L+E + T + Q+ L L + L + +A + Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQANAYQDA 553 Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631 V++MT+H+AKGLE P VF+V +F + Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMALDESG----------------------- 590 Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 EE RL YVG+TRA +L +C + Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619 >gi|315656421|ref|ZP_07909310.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492980|gb|EFU82582.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 877 Score = 271 bits (692), Expect = 5e-70, Method: Composition-based stats. Identities = 106/707 (14%), Positives = 200/707 (28%), Gaps = 144/707 (20%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L + W L ++ + ++ ++L + Sbjct: 85 GAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLVGNAAKYMWVST 144 Query: 66 FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110 F L T+ F+ T+ + + + K + + Sbjct: 145 FHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIKGRGLDPKRFPPKSFAAKISQA 204 Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167 ++ T ++F L + Y++ ++ DF+DLI +T L K Sbjct: 205 KNELITPEVFALGAGVDKMSQLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPD-- 262 Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227 I + + H+L+DE QDT+ Q+E+IR LT P L VGD QSIY Sbjct: 263 -ILARYRAKFLHVLVDEYQDTNPAQYELIRLLT---VGAAGDAQPPAELTVVGDSDQSIY 318 Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287 +F GA + + + + + L ++RST IL+V + + S E + Sbjct: 319 AFRGATIRNIEEFESDFP--------GATTVYLEQNYRSTGTILSVANAIISENEGRRKK 370 Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347 + + ++ L + A Sbjct: 371 NLWTDAGQGVQAV-----------------------------------LYAADTDRDEAA 395 Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407 I + + + + V R + + + I Sbjct: 396 FIVRELQKLRQEGS----------SWDEFAVFYRTNAQSRSLEEML----TREGIPYRVV 441 Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---------- 457 D IKD +A + DD + + +L P + + I Sbjct: 442 GGTKFYDRREIKDAIAYLCAAANLADDGNLLRVLNEPKRGLGDKAVQTIREVSLRENLDF 501 Query: 458 -TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQ 515 + + + + + + + + A + L Sbjct: 502 GQALRQFLPGGTHHGDLSAKASAGIAEFVGVLDAMRALDAASAPLDEILDTALEDSGYLP 561 Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANH-- 569 + + ++ L E N + + L + + + + +A Sbjct: 562 KLRKSNDPQDDARVENLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAAQPE 621 Query: 570 -----------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 EV +MTVHTAKGLE VF+ +F H Sbjct: 622 RPADPAHPAAPPEVTLMTVHTAKGLEFNTVFVTGMEDGLFPHSRSL-------------- 667 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 E RL YV +TRA +L + Sbjct: 668 --------------------ENPQDIAEERRLAYVAVTRARQRLYLT 694 >gi|261823387|ref|YP_003261493.1| DNA-dependent helicase II [Pectobacterium wasabiae WPP163] gi|261607400|gb|ACX89886.1| DNA helicase II [Pectobacterium wasabiae WPP163] Length = 720 Score = 271 bits (692), Expect = 5e-70, Method: Composition-based stats. Identities = 116/722 (16%), Positives = 222/722 (30%), Gaps = 132/722 (18%) Query: 6 GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65 G ++ L+++ W L S + + + L SQ Sbjct: 30 GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRINHLIGTSQGGMWIGT 89 Query: 66 FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113 F L+ L ++ + + + LK ++ + + R Sbjct: 90 FHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLIRALNLDEKQWPPRQAMWFINGK 149 Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169 + + + Y+EA + ++DF +L++ ++L + + Sbjct: 150 KDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 206 Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229 + +IL+DE QDT+ IQ+ I L D + VGD+ QSIY + Sbjct: 207 LNHYRERFTNILVDEFQDTNRIQYAWIHMLAGD----------SAKVMIVGDDDQSIYGW 256 Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289 GA+ + + + I L ++RST++IL + + + G + Sbjct: 257 RGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGGRLGKN- 307 Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349 LW + S F+ L + AR + Sbjct: 308 --------------------LW-------TDGVEGEPISLYCAFNELDE-------ARYV 333 Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409 I KD +L R + ++ + Sbjct: 334 VNRIKAWQENGGAL----------KDNAILYRSNAQSRVLEEAL----LQQSMPYRIYGG 379 Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468 + IKD ++ R I ++ DD +F ++ +P + + + R T+++ Sbjct: 380 MRFFERQEIKDSLSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQ 439 Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 + + Q I+ I L + H + + G Sbjct: 440 ATRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHVQTDRAIKDSGLWSMYEQEKG 499 Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577 + ++ L+E + T + Q L L + L + AN + V++MT+ Sbjct: 500 EKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDAVQLMTL 559 Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637 H+AKGLE P VF+V +F + Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590 Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697 EE RL YVG+TRA ++L I + K V + + Sbjct: 591 -----RLEEERRLAYVGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEECVEEVR 645 Query: 698 IK 699 ++ Sbjct: 646 LR 647 >gi|188993614|ref|YP_001905624.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. B100] gi|167735374|emb|CAP53588.1| DNA helicase II [Xanthomonas campestris pv. campestris] Length = 723 Score = 271 bits (692), Expect = 5e-70, Method: Composition-based stats. Identities = 97/575 (16%), Positives = 189/575 (32%), Gaps = 120/575 (20%) Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 R + + + + + A Y+E ++ +LDF +L++ ++LL+ + Sbjct: 149 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 205 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 IL+DE QDT+ IQ+ +R L + +F VGD+ Q+IY + GA Sbjct: 206 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGHVFVVGDDDQAIYGWRGA 255 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + V R + + L ++RS+A+IL + V + + G Sbjct: 256 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 302 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 QLW + + ++ + + AR + Sbjct: 303 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 332 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 + ++ VL R + + + Sbjct: 333 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEALIAEQL----PYRVYGGMRF 378 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471 + IKD +A R + ++ DD +F + +P + + ++ R +++E Sbjct: 379 FERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 438 Query: 472 KFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520 + + + +L + +L R+ + Sbjct: 439 LCTQENTLAARARNALATFLSLVGQLQAETGEMDLAERIDHVLMRSGLREHWAKESRGGL 498 Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576 + LDE ++ R + + EL++ L + A V++MT Sbjct: 499 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 558 Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636 +H+AKGLE P+VFLV +F Sbjct: 559 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 584 Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671 + EE RL YVG+TRA +L++C + Sbjct: 585 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 619 >gi|296121114|ref|YP_003628892.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] gi|296013454|gb|ADG66693.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] Length = 845 Score = 271 bits (692), Expect = 5e-70, Method: Composition-based stats. Identities = 106/689 (15%), Positives = 222/689 (32%), Gaps = 124/689 (17%) Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173 F + ++ Y++ +DF+DL+++ +LK+ +R + Sbjct: 154 FAQQAGERVGTHLDSVVAKAYGRYQQILLDANAVDFDDLLLHVVTILKENP---NLRQSL 210 Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233 D+ IL+DE QDT+ Q++++ +L+++ L A GD QSIY + GA+ Sbjct: 211 DERYRFILVDEYQDTNQAQYQIVSALSQN----------EPNLCATGDPDQSIYGWRGAQ 260 Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293 + +LR +R + ++ L +FRST +IL D + + S ++ Sbjct: 261 IENILRFERDFPR--------VKMVRLEDNFRSTPEILAAADDLIRHNTQRKAKSLRTSN 312 Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353 V++ + + A +A I Sbjct: 313 PSGL---------PVEIRQYADGFQE--------------------------ADSLAAEI 337 Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413 + + Q D + R + I ++ Sbjct: 338 RERVASGER---------QYSDFAIFYRVNSLSRSIETAL----GRARVPFAITGGVAFY 384 Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK 472 + +KDL+A R I + +D +F ++ +P+ ++ K+ +++ + + Sbjct: 385 ERTEVKDLIAYLRVIENPDDRPAFRRIVNTPVRGIGKNSQEKLDRWASARNLNLWDAVHQ 444 Query: 473 ------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-- 524 + + EL + + +I+ Q E Sbjct: 445 IDASIGLPKKAEYSLKLFANLLDELARRSH-GPIAELLEVIVERTGYLQNLSGLEPEEYA 503 Query: 525 -VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKG 582 ++E + + +Q+ L LE + +V++MT+H+AKG Sbjct: 504 NRKANVEELVASARQFDQDHVEG-GSLSEFLETCSLVQDADTIDESAGQVQLMTLHSAKG 562 Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642 LE P V+LV + H+ ++ Sbjct: 563 LEFPCVYLVGVEHGLLPHERS--------------------------------LREGDPL 590 Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702 EE RLL+VGMTRA ++L + S + + + + Sbjct: 591 QIEEERRLLFVGMTRAREELYLTWTRLRSTHGRLLSTIASQFL---TELNVARHDYSTDD 647 Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762 + +W E ++ L + + ++ + D + + + Sbjct: 648 DTSFGDWSPQEMRRGTSGDSILAQMADWGEQARKESSNPSDKATSTED-------DQADL 700 Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791 G + S+ T R I ++L+ Sbjct: 701 AEPGVDSQLFASSEEDTQPRATFIDRVLE 729 >gi|85714693|ref|ZP_01045680.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] gi|85698578|gb|EAQ36448.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] Length = 814 Score = 271 bits (692), Expect = 5e-70, Method: Composition-based stats. Identities = 99/562 (17%), Positives = 178/562 (31%), Gaps = 123/562 (21%) Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192 L A Y+ K DF DL++ L ++ + + IL+DE QDT++ Q Sbjct: 202 LYAAYQARLKILNAADFGDLLLENIRLFREHPD---VLRQYQNRFKFILVDEYQDTNVAQ 258 Query: 193 WEVIRSLTEDFFVG-------------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239 + +R L++ + + + VGD+ QSIY + GAE +LR Sbjct: 259 YLWLRLLSQTPPSAPALFPVPSAEEGPDARTARSKNICCVGDDDQSIYGWRGAEVDNILR 318 Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299 + +I L ++RST IL + + E G + Sbjct: 319 FEHDF--------SGAKVIRLERNYRSTGHILAAASHLIAHNEGRLGKTL---------- 360 Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359 + ++ + T +DS + AR I I + Sbjct: 361 ------------------RTEDIDGEKVTVTGSWDSEEE-------ARAIGEEIEQLQRA 395 Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419 + +I +LVR L + + I+ Sbjct: 396 GE----------KLNEIAILVRASFQMREFEDRFVTL----GLPYRVIGGPRFYERAEIR 441 Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI 478 D +A R I S DDL+F ++ P + + + R + E + Sbjct: 442 DALAYLRLINSPADDLAFERIVNVPKRGLGDATVQMLHGIARKRQIPLSEAARAVVETDE 501 Query: 479 SK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529 K + +++ + + ++L + + + + L Sbjct: 502 MKPKARGSLRALLESFDRWRLQRESMRHTELAEIVLDESGYTEMWQKDRSADAAGRLENL 561 Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 E + E L LE + R +A+ + V +MT+H+AKGLE VF Sbjct: 562 KELIRSMEEFEN--------LQGFLEHISLVMDRDGAADEDAVSVMTLHSAKGLEFDTVF 613 Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 L +F H+ + ++ EE R Sbjct: 614 LPGWEEGLFPHQR--------------------------------ALDEQGRAGLEEERR 641 Query: 650 LLYVGMTRASDQLIICKHSNTS 671 L +VG+TRA + + +N Sbjct: 642 LAHVGLTRARRRAKLYFATNRR 663 >gi|329894799|ref|ZP_08270599.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC3088] gi|328922693|gb|EGG30027.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC3088] Length = 715 Score = 271 bits (692), Expect = 5e-70, Method: Composition-based stats. Identities = 98/575 (17%), Positives = 190/575 (33%), Gaps = 115/575 (20%) Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193 YEEA +++ ++DF +L++ ++L + + HIL+DE QDT+ +Q+ Sbjct: 174 YTAYEEACERSSLVDFAELLLRAHELWLNQPT---LLKHYQNRFRHILVDEFQDTNTVQY 230 Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 +R L + + AVGD+ QSIY + GA+ + + R + Sbjct: 231 AWLRVLAG----------TQIPVMAVGDDDQSIYGWRGAKIENIQRFSQDF--------S 272 Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313 I L ++RST IL + V G LW Sbjct: 273 DTQTIRLEQNYRSTQTILKAANGVIDNNFGRLGK---------------------DLW-- 309 Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373 ++ + F+ + AR I I ++ Sbjct: 310 -----TEGDEGEKIDLYAGFNEHDE-------ARFIVDRIDAWHRDGNPRAS-------- 349 Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433 + VL R + ++ I + L I++ ++ R + ++ D Sbjct: 350 --VAVLYRSNAQSRVLEEAF----LRADIPYRIYGGQRFYERLEIRNALSYMRLVHNRND 403 Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS-----KFQHVIKY 487 D +F ++ +P I + R ++++++ + G+ Q + Sbjct: 404 DAAFERVINTPTRGIGAKTIETLRAVARDHSQSLWQSAIQLCGSGLPARASSALQGFLSL 463 Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGR---QQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544 I L + + ++ Q+ G ++ L E + + + Sbjct: 464 IETLDEQTDGLALGELTDHVVERSGLIAFHQKEKGERGQARVENLQELVVAAGQF-RADD 522 Query: 545 SSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 S+ L L+ + + + V++MT+H+AKGLE P+VFL +F H+ Sbjct: 523 ESITPLQQFLDNAALDAGEGQAEDFEDSVQLMTLHSAKGLEFPLVFLAGMEEGLFPHQMS 582 Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663 + EE RL YVG+TRA +L+ Sbjct: 583 SQDPT----------------------------------RLEEERRLCYVGITRAMQKLV 608 Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698 + N V + + ++ Sbjct: 609 LTYAETRRMHGSENYNAISRFVREIPDTCLQEVRL 643 >gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152027796|gb|ABS25564.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 1196 Score = 271 bits (692), Expect = 5e-70, Method: Composition-based stats. Identities = 137/989 (13%), Positives = 282/989 (28%), Gaps = 99/989 (10%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77 D+ ++ S + + +++A ++ + + L + Sbjct: 211 ADVDAARARLLAAAEAIASSGPQATGAGARDLVEAVRRALDALAPDDVRGEVDAEGLRRL 270 Query: 78 FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137 + + K L+E ++ + L A Y Sbjct: 271 LALGAAAKGKRLGKADGPLRELKDALAAAAEELGPLAAEGLAAATKEELCLLVAEAEARY 330 Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197 K+ +DF+DL++ DLL+ +R ++ +L+DE QD + +Q E+ Sbjct: 331 AATKRAARAVDFDDLLVRARDLLRHDGA---LRAELRARYRALLVDEYQDVNGVQQELFE 387 Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 L+ + L AVGD KQSIY F GA+ R R + + Sbjct: 388 LLSG------PGGPAGPLLVAVGDLKQSIYRFRGADVAVFARLIRRLEA------GDGRV 435 Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317 + L + RS ++ +V++VF+ + IR + + Sbjct: 436 LHLSDNHRSAPAVVELVNEVFARCMRPPDGAPPRDDEIRFSDADRLVPRRPEGARPACEL 495 Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN--------MIGTDTIFSNGKKR 369 + + A IA I + + R Sbjct: 496 LEDHEDG------------NAAERRRREAGAIARRIRAVVSGAAGVAVRERGEGGAERVR 543 Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + D+ +L R+ R I ++DL L + Sbjct: 544 RPRLSDVAILFRRLTQIGEYERALRA----AGIPYRLARGGGFYQAPEVRDLGELLATLA 599 Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---------------------------RHE 462 D + + +L+SP+ S+ +F + Sbjct: 600 DPSDAIGWAAVLRSPMCGVSDATLFLLARAGLARLARVSPERLAAEVARALGEGGAGALA 659 Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522 E + ++ ++ EL + +P T + ++ Sbjct: 660 PEAAERAVASVPAEDWARLTRLLDAWRELHALRDRLAPDALLTRAVERLDLDAVLLAGPD 719 Query: 523 NEVID-VLDEFLNFTLRNEQNSY--SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579 E + + + R + + L + PP A + V ++TVH Sbjct: 720 GERRAVNVAKAIALAARFGSDGGTAAELARHLRAQASRPPREPEAEVEAGDAVALLTVHQ 779 Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639 AKGLE PVVF+ D ++ + V D H Sbjct: 780 AKGLEWPVVFVPDL--GARPRSDARRALLDAEGRLCAMRYDPAADRFEETASVRDARAHE 837 Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----KSNQRTWYDMVYDSFHNDERV 695 +++ E RLLYV MTRA D+L++ ++ E + +E Sbjct: 838 RRAAAAESRRLLYVAMTRARDRLVLSGEASNGAESWRGLVEVAAEARAELVRRIALEEAG 897 Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755 ++ D+ A + ++ + P ++ + Sbjct: 898 SAPACGPPVDGDDAPAPAEPPAVAPPRLAGAPRVAAVRVAVTELAEYARCPRRHLLGRVL 957 Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAK 814 L + RG + H +L P +R+ + + + Sbjct: 958 GLP-----EPHGARGAPADDPGRATARGTLAHAMLAEADLAAPPLERRAQLAAAAARRGY 1012 Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCPKKD---IIISGR 867 + + +L + R EV ++ + + + G Sbjct: 1013 DPRSPGVRRILGEVARFANAEGGRALAEAARDGRLRREVPFLLRLPSRTRGDPSVYLVGA 1072 Query: 868 IDQISIS--QQNIFIFEYK--THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923 ID + + + + + +YK T + QL Y + ++P+ + Sbjct: 1073 IDALMVDRRARALTVVDYKYATWRP------DAADRYRLQLLAYVLAARRAHPDARVRAR 1126 Query: 924 LIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 L ++ + + + P Sbjct: 1127 LQFLRGDC-RAVDVTPGERELTRFAADAP 1154 >gi|326387191|ref|ZP_08208801.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM 19370] gi|326208372|gb|EGD59179.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM 19370] Length = 764 Score = 271 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 119/787 (15%), Positives = 233/787 (29%), Gaps = 126/787 (16%) Query: 18 KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--SQTQCIEERFSLLSSFFLT 75 + WP V+ NK E I + + + LT Sbjct: 59 RLAWPSEILCVTFTNKAAREMRERVGHLIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLT 118 Query: 76 QKFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIKIRDRFNT-------YKMFKSTLAS 126 FT + K+ + + + + + DR+ ++ + Sbjct: 119 SNFTILDTDDQLRLLKQLIQAEGVDDKRWPARQLAGLIDRWKNRGLNPADLDALENEAYA 178 Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186 + A Y++ + DF DL+++ ++ ++ + + Q ++++DE Q Sbjct: 179 NGRGQRFYALYQDRLRSINACDFGDLLLHMLNIFRRE---RDVLEQYQQRFRYVMVDEYQ 235 Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246 DT+ +Q+ +R L + R + VGD+ QSIYS+ GAE +LR ++ Sbjct: 236 DTNAVQYLWLRLLAQ----------GRRNICVVGDDDQSIYSWRGAEVANILRFEKDFP- 284 Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306 +I L ++RST IL + G + Sbjct: 285 -------GAKVIRLEQNYRSTPHILGAASGLIEENSERLGKTLW---------------- 321 Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 W + + ARR+ I + Sbjct: 322 --------TELDGGDKVRIVGVWDAPEE-----------ARRVGEEIERLEREGCPLDA- 361 Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426 I +LVR + T ++ F + I+D +A R Sbjct: 362 ---------IAILVRAQFQTREFEDRF----LQIGLAYRIVGGFRFYERAEIRDALAYLR 408 Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQ--- 482 I S DDL+F + +P + + K+ R ++ + + A+ + Sbjct: 409 LIASPSDDLAFERIWNTPKRGLGDKTLEKLHRYARAQSIPLLRAAIEIADTDELPARARG 468 Query: 483 ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539 + + + +P + +L + + L+ Sbjct: 469 TLVALARDFARWRDESARLTPAELARTVLDESGYTAALQAERSTDANGRLENLSELARAM 528 Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 E+ + L LE + +SA+ +V +MT+H AKGLE VFL VF Sbjct: 529 EE-----YETLSDFLEHVSLVMDNDNSADEAKVTVMTMHGAKGLEFDQVFLPGWEEGVFP 583 Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659 + + ++ EE RL YV +TRA Sbjct: 584 SQRSLDEGGL--------------------------------ASLEEERRLAYVAITRAR 611 Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719 + I +N + + + V++ ++ + E S Sbjct: 612 KRCTILHAANRRIYGQWTSSIPSRFIAELPEVH-VVEESSMSGGASLWRAQWSEQSDPFA 670 Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779 + + + Q+ + + I E S ++ Sbjct: 671 HVARNQPGKVASRGPGWQRAAAQPLNTAPRRIAETGRSAASMAGKARPEFARGTRVFHEK 730 Query: 780 FNRGLII 786 F G ++ Sbjct: 731 FGYGTVV 737 >gi|296113478|ref|YP_003627416.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4] gi|295921172|gb|ADG61523.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4] gi|326559400|gb|EGE09825.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 46P47B1] gi|326566037|gb|EGE16197.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 12P80B1] gi|326568114|gb|EGE18198.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC7] gi|326568531|gb|EGE18603.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC1] gi|326572434|gb|EGE22426.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC8] gi|326572519|gb|EGE22508.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis CO72] Length = 689 Score = 271 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 104/601 (17%), Positives = 203/601 (33%), Gaps = 126/601 (20%) Query: 81 QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140 + N+ E + + +K+ +++ I +D T + L YE Sbjct: 139 RDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLDDPEDLGFVH-----LYELYERN 193 Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 + +DF+DLI +L++ ++ K I ++L+DE QDT+ Q+E+I+ L Sbjct: 194 LRAYNAVDFDDLIAMPVRILRESHE---VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLV 250 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 VGD+ QSIY++ GA+P+ + K+ +++L Sbjct: 251 GRL----------GRFTVVGDDDQSIYTWRGAKPENMALLKQDFPN--------LEVVKL 292 Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320 ++RST IL + V + E+ S LW Sbjct: 293 EQNYRSTNHILGAANAVIANNEHMFEKS---------------------LW-------SD 324 Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380 + + ++ + + + A R+A I ++ + VL Sbjct: 325 KGDGEKIRVITCNNDFDE-------AERVAKEI---------LTHRLRNNQTWDKYAVLY 368 Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440 R + R L+ I + IKDLM R I++ +DD +F+ + Sbjct: 369 RSNFQARALEAQLRQLE----IPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRV 424 Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI--SKFQHVIKYIHELI----- 492 + +P + K+ ++ + +K +I+ E I Sbjct: 425 INTPKRGIGSVTLEKLGLFAQHCGTSLLGACTRAGVKDALGAKAGAIIESFGEFINYYTH 484 Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543 + P ++ N +D ++ R + Sbjct: 485 QLHDNSDPMPLVRQMITETGYIDYVKESSKNPQQEKGRLDNIEALYLSIAALINRADDEH 544 Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603 ++ +I ++