BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.410_1 (952 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.410_1 Length = 952 Score = 1962 bits (5084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 952/952 (100%), Positives = 952/952 (100%) Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ Sbjct: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60 Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF Sbjct: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120 Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI Sbjct: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180 Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE Sbjct: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240 Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS Sbjct: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300 Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD Sbjct: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360 Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD Sbjct: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420 Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK Sbjct: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480 Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE Sbjct: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540 Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH Sbjct: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600 Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD Sbjct: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE Sbjct: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720 Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF Sbjct: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780 Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA Sbjct: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840 Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH Sbjct: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900 Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP Sbjct: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952 >gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] Length = 685 Score = 51.2 bits (121), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 19/139 (13%) Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200 K K+C DF LII T ++L V K ++I +I++DE QD + Q+ ++R L Sbjct: 203 KTKSC--DFGGLIIKTIEVLHHPHVLK----KYHEKIPYIMVDEYQDINTPQYLLLRLLC 256 Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260 + K + VGDE Q IY + GA+ +L QK +A +II+L Sbjct: 257 Q-----KEDSKQGARICCVGDENQCIYEWRGAQFSHILN----FQKDFKDA----NIIKL 303 Query: 261 PLSFRSTADILTVVDKVFS 279 ++RST IL +K+ S Sbjct: 304 EQNYRSTTHILNTANKLIS 322 Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/245 (22%), Positives = 102/245 (41%), Gaps = 37/245 (15%) Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434 +I +LVR T F FL+ + V+G + D I+D +A R + + D Sbjct: 375 NIAILVRTSWQTR--KFEDAFLEQEIPHKVIGGSFY---DRQEIRDALAYFRLVCQEHRD 429 Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISK------FQHVI 485 F ++ P ++ + KI Q H ++ ++ + +K + G + Q+ + Sbjct: 430 EDFKRIINCPKRGIGKESLHKI--QYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFV 487 Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--------EVIDVLDEFLNFTL 537 K I + ++ P +IL + +++ + N E +D L E L+ Sbjct: 488 KDIRRWNNCSKKMDPAPIANMILE----QSGYMAMWKNNKSSEKSQERLDNLRELLSIIE 543 Query: 538 RNEQNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596 ++E LQ + E L + P + N ++IMT+H AKGLE VF+ Sbjct: 544 KHETLEGFVLQAPLRENLGSFIP--------DSNCIQIMTLHAAKGLEFDTVFISGWEQG 595 Query: 597 VFSHK 601 + H+ Sbjct: 596 LLPHQ 600 >gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 26.9 bits (58), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 73 FLTQKFTPQKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 FL + + II + P + E + ++D I + + S S+ L K Sbjct: 190 FLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIK 249 Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL 159 + AH K C + +LI+N ND+ Sbjct: 250 HAKAHN---TKATCGISINNLILNENDV 274 >gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 358 Score = 26.6 bits (57), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 392 LTRFLKNDYKISVVGNDRFILTDHL-AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450 L R+L ND KI V+ D+ +L ++K++ F Q D C ++S L F Sbjct: 16 LCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDREC-IRSALKEFQP 74 Query: 451 DDIFKICTQRHETETV 466 D I + H ++ Sbjct: 75 DAIVNFAAESHVDRSI 90 >gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 324 Score = 26.2 bits (56), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED--FFVGKNTHSSPRTL 216 +L+K SA IRYK E + ++ L++W ++++ F GK+ + R + Sbjct: 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKD-RAGDRGI 139 Query: 217 FAVGDEKQSIYSFH 230 EK Y FH Sbjct: 140 LQKRGEK---YGFH 150 >gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 261 Score = 25.8 bits (55), Expect = 3.5, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALG 425 +++NDY++ + D L +HL I + +G Sbjct: 74 YIENDYRLVFMAADAVSLLEHLGISKVHVMG 104 >gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62] Length = 131 Score = 25.4 bits (54), Expect = 4.0, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110 +TL QA QC F+L+ +K + +++ K +L EK + + + + Sbjct: 25 ETLMQADMNQCTGNSFALVK-----EKLEATYKKVLEKVEKHQRELFEKSQMAWEIYRGS 79 Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143 F + T S+ A L H E +K Sbjct: 80 ECAFAASGAEEGTAQSMIYANCLQGHAIERNEK 112 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.385 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 617,271 Number of Sequences: 1233 Number of extensions: 26698 Number of successful extensions: 80 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 67 Number of HSP's gapped (non-prelim): 16 length of query: 952 length of database: 328,796 effective HSP length: 83 effective length of query: 869 effective length of database: 226,457 effective search space: 196791133 effective search space used: 196791133 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)