BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 537021.9.peg.410_1
(952 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>537021.9.peg.410_1
Length = 952
Score = 1962 bits (5084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 952/952 (100%), Positives = 952/952 (100%)
Query: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ
Sbjct: 1 LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
Query: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF
Sbjct: 61 CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI
Sbjct: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE
Sbjct: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS
Sbjct: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD
Sbjct: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD
Sbjct: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK
Sbjct: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE
Sbjct: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH
Sbjct: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD
Sbjct: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE
Sbjct: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF
Sbjct: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA
Sbjct: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH
Sbjct: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP
Sbjct: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 685
Score = 51.2 bits (121), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 19/139 (13%)
Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
K K+C DF LII T ++L V K ++I +I++DE QD + Q+ ++R L
Sbjct: 203 KTKSC--DFGGLIIKTIEVLHHPHVLK----KYHEKIPYIMVDEYQDINTPQYLLLRLLC 256
Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
+ K + VGDE Q IY + GA+ +L QK +A +II+L
Sbjct: 257 Q-----KEDSKQGARICCVGDENQCIYEWRGAQFSHILN----FQKDFKDA----NIIKL 303
Query: 261 PLSFRSTADILTVVDKVFS 279
++RST IL +K+ S
Sbjct: 304 EQNYRSTTHILNTANKLIS 322
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 102/245 (41%), Gaps = 37/245 (15%)
Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
+I +LVR T F FL+ + V+G + D I+D +A R + + D
Sbjct: 375 NIAILVRTSWQTR--KFEDAFLEQEIPHKVIGGSFY---DRQEIRDALAYFRLVCQEHRD 429
Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISK------FQHVI 485
F ++ P ++ + KI Q H ++ ++ + +K + G + Q+ +
Sbjct: 430 EDFKRIINCPKRGIGKESLHKI--QYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFV 487
Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--------EVIDVLDEFLNFTL 537
K I + ++ P +IL + +++ + N E +D L E L+
Sbjct: 488 KDIRRWNNCSKKMDPAPIANMILE----QSGYMAMWKNNKSSEKSQERLDNLRELLSIIE 543
Query: 538 RNEQNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
++E LQ + E L + P + N ++IMT+H AKGLE VF+
Sbjct: 544 KHETLEGFVLQAPLRENLGSFIP--------DSNCIQIMTLHAAKGLEFDTVFISGWEQG 595
Query: 597 VFSHK 601
+ H+
Sbjct: 596 LLPHQ 600
>gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
Length = 431
Score = 26.9 bits (58), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 73 FLTQKFTPQKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
FL + + II + P + E + ++D I + + S S+ L K
Sbjct: 190 FLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIK 249
Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL 159
+ AH K C + +LI+N ND+
Sbjct: 250 HAKAHN---TKATCGISINNLILNENDV 274
>gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 358
Score = 26.6 bits (57), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 392 LTRFLKNDYKISVVGNDRFILTDHL-AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
L R+L ND KI V+ D+ +L ++K++ F Q D C ++S L F
Sbjct: 16 LCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDREC-IRSALKEFQP 74
Query: 451 DDIFKICTQRHETETV 466
D I + H ++
Sbjct: 75 DAIVNFAAESHVDRSI 90
>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 324
Score = 26.2 bits (56), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED--FFVGKNTHSSPRTL 216
+L+K SA IRYK E + ++ L++W ++++ F GK+ + R +
Sbjct: 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKD-RAGDRGI 139
Query: 217 FAVGDEKQSIYSFH 230
EK Y FH
Sbjct: 140 LQKRGEK---YGFH 150
>gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 261
Score = 25.8 bits (55), Expect = 3.5, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
+++NDY++ + D L +HL I + +G
Sbjct: 74 YIENDYRLVFMAADAVSLLEHLGISKVHVMG 104
>gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 131
Score = 25.4 bits (54), Expect = 4.0, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 51 QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
+TL QA QC F+L+ +K + +++ K +L EK + + + +
Sbjct: 25 ETLMQADMNQCTGNSFALVK-----EKLEATYKKVLEKVEKHQRELFEKSQMAWEIYRGS 79
Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
F + T S+ A L H E +K
Sbjct: 80 ECAFAASGAEEGTAQSMIYANCLQGHAIERNEK 112
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,271
Number of Sequences: 1233
Number of extensions: 26698
Number of successful extensions: 80
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 16
length of query: 952
length of database: 328,796
effective HSP length: 83
effective length of query: 869
effective length of database: 226,457
effective search space: 196791133
effective search space used: 196791133
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)