RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.414_1
         (45 letters)



>gnl|CDD|177629 PHA03393, odv-e66, occlusion-derived virus envelope protein E66;
           Provisional.
          Length = 682

 Score = 26.0 bits (58), Expect = 2.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 14  NGELNCIFEFQFVILK 29
              + C+F+F +V+LK
Sbjct: 598 GNSIKCVFDFPYVVLK 613


>gnl|CDD|152719 pfam12284, HoxA13_N, Hox protein A13 N terminal.  This family of
          proteins is found in eukaryotes. Proteins in this
          family are typically between 149 and 306 amino acids in
          length. The family is found in association with
          pfam00046. This family is the N terminal of the Hox
          gene protein involved in formation of the digital arch
          of the hands and feet as well as in correct genital
          formation. Mutation of the protein is associated with
          hand-foot-genital syndrome.
          Length = 115

 Score = 25.2 bits (55), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 4  GYYPCKVNLENGELNC 19
          GYYPC+++   G  +C
Sbjct: 76 GYYPCRMSHHGGVKSC 91


>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
          Length = 286

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 14  NGELNCIFEFQFVILK 29
           +G L+C +E QFVI K
Sbjct: 256 DGGLSCQYEHQFVITK 271


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.330    0.153    0.475 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 712,504
Number of extensions: 26732
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 4
Length of query: 45
Length of database: 5,994,473
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,605,529
Effective search space: 151349283
Effective search space used: 151349283
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.3 bits)