HHsearch alignment of GI: peg_42 and MMDB domain: 3i1n_4_
>3i1n_4 (4:) 50S ribosomal protein L36; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_4 1p86_4 1vs8_4 2aw4_4 2awb_4 1vs6_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* 2qp1_4* ...
Probab=99.75 E-value=4.1e-20 Score=121.75 Aligned_cols=38 Identities=45% Similarity=0.722 Sum_probs=35.8
Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf 97458899885016787099988889999877975232079
Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44)
Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44)
|||++|||++| .+|++|||+|++||||++|||||||||
T Consensus 1 MKVr~svKk~C---~~C~ivrR~grv~ViC~~nPrHKQRQG 38 (38)
T 3i1n_4 1 MKVRASVKKLC---RNCKIVKRDGVIRVICSAEPKHKQRQG 38 (38)
T ss_dssp CBCCSCCCCCS---TTCCCEEETTEEEBCCSSCGGGCBCCC
T ss_pred CCCCHHHHHCC---CCCCEEEECCEEEEEECCCCCCCCCCC
T ss_conf 96020213007---897189846889999089985001278