RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.42_1
         (44 letters)



>gnl|CDD|144147 pfam00444, Ribosomal_L36, Ribosomal protein L36. 
          Length = 38

 Score = 30.2 bits (69), Expect = 0.13
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 5  KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44
          KVR+S+   K R +  K+VRRK  + ++ K NPR K RQG
Sbjct: 2  KVRSSV---KKRCKDCKIVRRKGRVYVICKTNPRHKQRQG 38


>gnl|CDD|30606 COG0257, RpmJ, Ribosomal protein L36 [Translation, ribosomal
          structure and biogenesis].
          Length = 38

 Score = 27.1 bits (60), Expect = 1.3
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 13 LKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44
          +K R R  K+VRRK  + ++ K NP+ K RQG
Sbjct: 7  VKKRCRDCKIVRRKGRVYVICKKNPKHKQRQG 38


>gnl|CDD|176954 CHL00011, ndhD, NADH dehydrogenase subunit 4.
          Length = 498

 Score = 24.9 bits (55), Expect = 4.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 15 LRHRGNKVVRR 25
          L HRGNKV+R 
Sbjct: 24 LPHRGNKVIRW 34


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.145    0.399 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 478,335
Number of extensions: 14600
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 8
Length of query: 44
Length of database: 6,263,737
Length adjustment: 17
Effective length of query: 27
Effective length of database: 5,896,384
Effective search space: 159202368
Effective search space used: 159202368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.7 bits)