RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.42_1
         (44 letters)



>gnl|CDD|179138 PRK00831, rpmJ, 50S ribosomal protein L36; Validated.
          Length = 41

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 5  KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44
          KVRNSL+ LK RHR  +VVRRK  + ++NK NPRFK RQG
Sbjct: 2  KVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG 41


>gnl|CDD|179714 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
          Length = 1121

 Score = 24.1 bits (53), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 8   NSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVR 42
            SL + +L     K+    NV+  VN+L+  F++R
Sbjct: 535 YSLGLDELEELKKKLDDGSNVLEAVNELSG-FEIR 568


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.145    0.399 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 677,579
Number of extensions: 25144
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 11
Length of query: 44
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 27
Effective length of database: 5,627,137
Effective search space: 151932699
Effective search space used: 151932699
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.2 bits)