RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.42_1 (44 letters) >gnl|CDD|179138 PRK00831, rpmJ, 50S ribosomal protein L36; Validated. Length = 41 Score = 40.4 bits (95), Expect = 1e-04 Identities = 26/40 (65%), Positives = 31/40 (77%) Query: 5 KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 KVRNSL+ LK RHR +VVRRK + ++NK NPRFK RQG Sbjct: 2 KVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG 41 >gnl|CDD|179714 PRK04023, PRK04023, DNA polymerase II large subunit; Validated. Length = 1121 Score = 24.1 bits (53), Expect = 8.5 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 8 NSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVR 42 SL + +L K+ NV+ VN+L+ F++R Sbjct: 535 YSLGLDELEELKKKLDDGSNVLEAVNELSG-FEIR 568 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.145 0.399 Gapped Lambda K H 0.267 0.0647 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 677,579 Number of extensions: 25144 Number of successful extensions: 89 Number of sequences better than 10.0: 1 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 11 Length of query: 44 Length of database: 5,994,473 Length adjustment: 17 Effective length of query: 27 Effective length of database: 5,627,137 Effective search space: 151932699 Effective search space used: 151932699 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 50 (23.2 bits)