RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.42_1
         (44 letters)



>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach
          chloroplast ribosome, ribonucleoprotein particle,
          macromolecular complex; 9.40A {Arabidopsis thaliana}
          (6:)
          Length = 104

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 5  KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44
          KVR+S+   K      K V+R+  + ++   NP+ K RQG
Sbjct: 2  KVRSSV---KKMCEFCKTVKRRGRVYVICSSNPKHKQRQG 38


>3i1n_4 50S ribosomal protein L36; ribosome structure, protein-RNA
          complex, acetylation, ribonucleoprotein, ribosomal
          protein, RNA-binding, rRNA- binding, methylation; 3.19A
          {Escherichia coli k-12} PDB: 1p85_4 1p86_4 1vs8_4
          2aw4_4 2awb_4 1vs6_4 2i2v_4 2j28_4 2i2t_4* 2qao_4*
          2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4
          2qox_4 2qoz_4* 2qp1_4* ... (4:)
          Length = 38

 Score = 28.8 bits (65), Expect = 0.25
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 5  KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44
          KVR S+   K   R  K+V+R  VIR++    P+ K RQG
Sbjct: 2  KVRASV---KKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.145    0.399 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 311,863
Number of extensions: 8287
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 6
Length of query: 44
Length of database: 4,956,049
Length adjustment: 16
Effective length of query: 28
Effective length of database: 4,415,169
Effective search space: 123624732
Effective search space used: 123624732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.0 bits)