RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.42_1 (44 letters) >3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1 PDB: 1p85_4 1p86_4 1vs6_4 1vs8_4 2aw4_4 2awb_4 2i2t_4 2i2v_4 2j28_4 2qam_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ... Length = 104 Score = 46.1 bits (109), Expect = 2e-06 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Query: 5 KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 KVR+S+ K K V+R+ + ++ NP+ K RQG Sbjct: 2 KVRSSV---KKMCEFCKTVKRRGRVYVICSSNPKHKQRQG 38 >3ofq_4 50S ribosomal protein L36; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ... Length = 38 Score = 30.0 bits (68), Expect = 0.13 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Query: 5 KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 KVR S+ K R K+V+R VIR++ P+ K RQG Sbjct: 2 KVRASV---KKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 >3i1n_4 50S ribosomal protein L36; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_4 1p86_4 1vs8_4 2aw4_4 2awb_4 1vs6_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* 2qp1_4* ... Length = 38 Score = 29.5 bits (67), Expect = 0.16 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Query: 5 KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 KVR S+ K R K+V+R VIR++ P+ K RQG Sbjct: 2 KVRASV---KKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.331 0.145 0.399 Gapped Lambda K H 0.267 0.0710 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 356,235 Number of extensions: 10422 Number of successful extensions: 43 Number of sequences better than 10.0: 1 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 6 Length of query: 44 Length of database: 5,693,230 Length adjustment: 17 Effective length of query: 27 Effective length of database: 5,281,082 Effective search space: 142589214 Effective search space used: 142589214 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 50 (23.1 bits)