RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.42_1 (44 letters) >d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]} Length = 38 Score = 29.6 bits (67), Expect = 0.084 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Query: 5 KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 KVR S+ K R K+V+R VIR++ P+ K RQG Sbjct: 2 KVRASV---KKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.331 0.145 0.399 Gapped Lambda K H 0.267 0.0737 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 153,209 Number of extensions: 4546 Number of successful extensions: 20 Number of sequences better than 10.0: 1 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 5 Length of query: 44 Length of database: 2,407,596 Length adjustment: 16 Effective length of query: 28 Effective length of database: 2,187,916 Effective search space: 61261648 Effective search space used: 61261648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 47 (21.9 bits)