RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.42_1
         (44 letters)



>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli
          [TaxId: 562]}
          Length = 38

 Score = 29.6 bits (67), Expect = 0.084
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 5  KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44
          KVR S+   K   R  K+V+R  VIR++    P+ K RQG
Sbjct: 2  KVRASV---KKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.145    0.399 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 153,209
Number of extensions: 4546
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 5
Length of query: 44
Length of database: 2,407,596
Length adjustment: 16
Effective length of query: 28
Effective length of database: 2,187,916
Effective search space: 61261648
Effective search space used: 61261648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (21.9 bits)