Query         537021.9.peg.423_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Tue May 24 23:27:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_423.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1n93_X P40 nucleoprotein; RNA  36.5      18 0.00053   17.0   1.6   11   26-36     14-24  (110)
  2 >3ee7_A Replicase polyprotein    7.8      11 0.00033   18.1  -4.8   14   16-29     87-100 (121)
  3 >3fxh_A Integron gene cassette   7.2 1.7E+02  0.0051   12.1   2.1   15   22-36    117-131 (135)
  4 >2j97_A Replicase polyprotein    7.2      12 0.00036   17.9  -4.8   13   16-28     83-95  (109)
  5 >1rso_A SAP97, presynaptic pro   5.8 2.1E+02  0.0061   11.7   1.2   12   26-37     27-38  (60)
  6 >1uw7_A NSP9; viral protein, r   5.3      18 0.00054   17.0  -4.8   14   16-29    117-130 (143)
  7 >3foz_A TRNA delta(2)-isopente   4.2 2.7E+02  0.0081   11.1   1.2   19   16-34     49-67  (84)
  8 >2d0t_A Indoleamine 2,3-dioxyg   3.9 2.9E+02  0.0086   10.9   1.3   12   25-36      9-20  (54)
  9 >2nml_A Enhancer of rudimentar   3.8   3E+02  0.0088   10.9   0.9   12   25-36     24-35  (104)
 10 >2z5b_A Protein YPL144W, DMP1;   3.4 3.2E+02  0.0095   10.7   1.8   11   23-33    135-145 (151)

No 1  
>>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} (X:129-238)
Probab=36.45  E-value=18  Score=17.02  Aligned_cols=11  Identities=45%  Similarity=1.035  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHH
Q ss_conf             98999999841
Q 537021.9.peg.4   26 INTCIDLLIGI   36 (37)
Q Consensus        26 intcidlligi   36 (37)
                      .+.|-|||||+
T Consensus        14 ~~HCC~LLIGv   24 (110)
T 1n93_X           14 FSHCCSLLIGV   24 (110)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99988888754


No 2  
>>3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, cytoplasm, hydrolase, membrane, metal-binding, protease; 2.60A {Sars coronavirus} PDB: 1qz8_A (A:)
Probab=7.80  E-value=11  Score=18.08  Aligned_cols=14  Identities=43%  Similarity=0.985  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999869899
Q 537021.9.peg.4   16 FLYFVQGLLSINTC   29 (37)
Q Consensus        16 flyfvqgllsintc   29 (37)
                      +||||+++-+++.-
T Consensus        87 YLYFVKnln~L~RG  100 (121)
T 3ee7_A           87 YLYFIKGLNNLNRG  100 (121)
T ss_dssp             EEEEBTTCCHHHHH
T ss_pred             EEEEECCCCCCCCC
T ss_conf             99995174400000


No 3  
>>3fxh_A Integron gene cassette protein HFX_CASS2; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.84A {Uncultured bacterium} (A:)
Probab=7.23  E-value=1.7e+02  Score=12.06  Aligned_cols=15  Identities=47%  Similarity=0.744  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             998698999999841
Q 537021.9.peg.4   22 GLLSINTCIDLLIGI   36 (37)
Q Consensus        22 gllsintcidlligi   36 (37)
                      -||.||.|...|-.|
T Consensus       117 lllainiclailrei  131 (135)
T 3fxh_A          117 LLLAINICLAILREI  131 (135)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999986


No 4  
>>2j97_A Replicase polyprotein 1AB; SSB, zinc, HCOV, membrane, helicase, SARS COV, viral replicase, RNA replication, ATP-binding; 1.75A {Human coronavirus 229E} PDB: 2j98_A 2j98_B (A:)
Probab=7.21  E-value=12  Score=17.85  Aligned_cols=13  Identities=38%  Similarity=0.871  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999986989
Q 537021.9.peg.4   16 FLYFVQGLLSINT   28 (37)
Q Consensus        16 flyfvqgllsint   28 (37)
                      +||||+++-+++.
T Consensus        83 YLYFvKnln~L~R   95 (109)
T 2j97_A           83 YLYFVKNLNNLRR   95 (109)
T ss_dssp             EEEEBTTCCHHHH
T ss_pred             EEEEECCCCHHHC
T ss_conf             9998617330100


No 5  
>>1rso_A SAP97, presynaptic protein SAP97; L27 domain, scaffold protein, protein assembly, cell polarity; NMR {Rattus norvegicus} (A:)
Probab=5.83  E-value=2.1e+02  Score=11.66  Aligned_cols=12  Identities=33%  Similarity=0.733  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             989999998419
Q 537021.9.peg.4   26 INTCIDLLIGIF   37 (37)
Q Consensus        26 intcidlligif   37 (37)
                      ..+.|+-+|+||
T Consensus        27 Lr~aiervI~iF   38 (60)
T 1rso_A           27 LRSSIERVISIF   38 (60)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 6  
>>1uw7_A NSP9; viral protein, replicase protein, RNA-binding; 2.8A {Sars coronavirus hku-39849} (A:)
Probab=5.29  E-value=18  Score=16.98  Aligned_cols=14  Identities=43%  Similarity=0.985  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999869899
Q 537021.9.peg.4   16 FLYFVQGLLSINTC   29 (37)
Q Consensus        16 flyfvqgllsintc   29 (37)
                      +||||+++-+++.-
T Consensus       117 YLYFVKNlntL~RG  130 (143)
T 1uw7_A          117 YLYFIKGLNNLNRG  130 (143)
T ss_dssp             EEEEBTTCCHHHHH
T ss_pred             EEEEECCCCCCCCC
T ss_conf             99995265510001


No 7  
>>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A (A:206-289)
Probab=4.20  E-value=2.7e+02  Score=11.05  Aligned_cols=19  Identities=11%  Similarity=0.242  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999986989999998
Q 537021.9.peg.4   16 FLYFVQGLLSINTCIDLLI   34 (37)
Q Consensus        16 flyfvqgllsintcidlli   34 (37)
                      ++-+.+|-.|.+.|++.+.
T Consensus        49 ~~~~l~~~~~~~e~i~~~~   67 (84)
T 3foz_A           49 MWSYLEGEISYDEMVYRGV   67 (84)
T ss_dssp             HHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHH
T ss_conf             9999849999999999999


No 8  
>>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} (A:263-316)
Probab=3.86  E-value=2.9e+02  Score=10.90  Aligned_cols=12  Identities=50%  Similarity=1.071  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             698999999841
Q 537021.9.peg.4   25 SINTCIDLLIGI   36 (37)
Q Consensus        25 sintcidlligi   36 (37)
                      |+-.|+|.+.||
T Consensus         9 Sliq~~D~lLgI   20 (54)
T 2d0t_A            9 SVFQCFDVLLGI   20 (54)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             CHHHHHHHHHCC
T ss_conf             408999999588


No 9  
>>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} (A:)
Probab=3.77  E-value=3e+02  Score=10.86  Aligned_cols=12  Identities=25%  Similarity=0.650  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             698999999841
Q 537021.9.peg.4   25 SINTCIDLLIGI   36 (37)
Q Consensus        25 sintcidlligi   36 (37)
                      |+|.|+|-.-++
T Consensus        24 Sv~~cmegIC~i   35 (104)
T 2nml_A           24 SVNECMEGVCKM   35 (104)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             399999999999


No 10 
>>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A (A:)
Probab=3.42  E-value=3.2e+02  Score=10.68  Aligned_cols=11  Identities=45%  Similarity=0.996  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHH
Q ss_conf             98698999999
Q 537021.9.peg.4   23 LLSINTCIDLL   33 (37)
Q Consensus        23 llsintcidll   33 (37)
                      |.-|..|+|++
T Consensus       135 L~iikkCi~~l  145 (151)
T 2z5b_A          135 LYILKKCLDLL  145 (151)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


Done!