Query 537021.9.peg.455_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 20:15:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_455.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ayu_A Nucleosome assembly pr 32.0 13 0.00037 18.8 0.3 12 11-22 42-53 (55) 2 >3do9_A UPF0302 protein BA_154 25.1 60 0.0018 15.5 2.7 32 6-37 14-46 (127) 3 >2z3y_A Lysine-specific histon 21.5 57 0.0017 15.6 2.0 24 14-37 3-26 (150) 4 >3ct5_A Morphogenesis protein 8.9 1.7E+02 0.005 13.2 2.6 28 4-31 17-46 (105) 5 >3c1y_A DNA integrity scanning 6.7 2E+02 0.006 12.9 1.2 12 21-32 70-81 (137) 6 >2k1k_A Ephrin type-A receptor 5.5 2.6E+02 0.0077 12.3 2.0 14 4-17 24-37 (38) 7 >2i39_A Protein N1, N1L protei 5.1 2.7E+02 0.0081 12.2 1.9 27 4-30 22-49 (137) 8 >1cii_A Colicin IA; bacterioci 4.4 3.1E+02 0.0092 11.9 1.5 16 11-26 183-198 (206) 9 >3kus_A Polyadenylate-binding 4.3 3.2E+02 0.0095 11.9 3.0 22 9-30 28-49 (88) 10 >3e56_A Putative uncharacteriz 4.2 1.4E+02 0.0041 13.7 -1.0 10 28-37 48-57 (92) No 1 >>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} (A:89-143) Probab=32.01 E-value=13 Score=18.83 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=10.2 Q ss_pred HHHHHHCCHHHH Q ss_conf 999752241789 Q 537021.9.peg.4 11 FLFEKRKGIICG 22 (37) Q Consensus 11 flfekrkgiicg 22 (37) -+|+||+.||.| T Consensus 42 Ply~kR~eIV~G 53 (55) T 2ayu_A 42 PIWEQRSRIISG 53 (55) T ss_dssp HHHHHHHHHHHT T ss_pred HHHHHHHHHHCC T ss_conf 699999999768 No 2 >>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis} (A:1-127) Probab=25.06 E-value=60 Score=15.47 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=25.2 Q ss_pred HHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCC Q ss_conf 999999997-52241789999999846776369 Q 537021.9.peg.4 6 IIIVYFLFE-KRKGIICGRLLNMLLEEKSFLSN 37 (37) Q Consensus 6 iiivyflfe-krkgiicgrllnmlleeksflsn 37 (37) --|.|||+. .-|.-+|-++||.++....+|.+ T Consensus 14 ~Fi~wfL~~y~lK~re~~wiLnyl~~~~~lL~~ 46 (127) T 3do9_A 14 DFVKWFLNNYQLKQRECVWILNYLMSHDQLMHK 46 (127) T ss_dssp HHHHHHHHHCCBSSTHHHHHHHHHHHCTTTTTT T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHH T ss_conf 999999985554320599999999719998866 No 3 >>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} (A:198-347) Probab=21.53 E-value=57 Score=15.60 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=19.4 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCC Q ss_conf 752241789999999846776369 Q 537021.9.peg.4 14 EKRKGIICGRLLNMLLEEKSFLSN 37 (37) Q Consensus 14 ekrkgiicgrllnmlleeksflsn 37 (37) .|+|.-..-|-.|-|||..|+||+ T Consensus 3 pK~KDemVErEFNRLLEatSYLSH 26 (150) T 2z3y_A 3 PKEKDEMVEQEFNRLLEATSYLSH 26 (150) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 612456788888876654443200 No 4 >>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, structure, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A* (A:1-54,A:109-159) Probab=8.95 E-value=1.7e+02 Score=13.24 Aligned_cols=28 Identities=39% Similarity=0.452 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHH--HCCHHHHHHHHHHHHH Q ss_conf 999999999975--2241789999999846 Q 537021.9.peg.4 4 LAIIIVYFLFEK--RKGIICGRLLNMLLEE 31 (37) Q Consensus 4 laiiivyflfek--rkgiicgrllnmllee 31 (37) -|--|.-+|-.| .+.-|||-|-||--|. T Consensus 17 nAqyIl~YL~~kGwT~nAICGmLGNmq~ES 46 (105) T 3ct5_A 17 NAQYILNYLSSNGWTKQAICGMLGNMQSES 46 (105) T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHC T ss_conf 799999999986999999999999887450 No 5 >>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* (A:167-303) Probab=6.68 E-value=2e+02 Score=12.86 Aligned_cols=12 Identities=50% Similarity=0.556 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999998467 Q 537021.9.peg.4 21 CGRLLNMLLEEK 32 (37) Q Consensus 21 cgrllnmlleek 32 (37) -|||+.|-++|- T Consensus 70 eGRLi~lQleEL 81 (137) T 3c1y_A 70 EGRLARMQLREL 81 (137) T ss_dssp GGHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 140099999999 No 6 >>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A (A:) Probab=5.46 E-value=2.6e+02 Score=12.31 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99999999997522 Q 537021.9.peg.4 4 LAIIIVYFLFEKRK 17 (37) Q Consensus 4 laiiivyflfekrk 17 (37) +|.+.-.|.|.+|+ T Consensus 24 ~alllg~~~fr~rr 37 (38) T 2k1k_A 24 AALLLGILVFRSRR 37 (38) T ss_dssp HHHHHHHHHHHHCC T ss_pred HHHHHHHHHEECCC T ss_conf 99999888410125 No 7 >>2i39_A Protein N1, N1L protein; all alpha, viral protein; 2.20A {Vaccinia virus} PDB: 2uxe_A (A:) Probab=5.13 E-value=2.7e+02 Score=12.19 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHH-CCHHHHHHHHHHHH Q ss_conf 9999999999752-24178999999984 Q 537021.9.peg.4 4 LAIIIVYFLFEKR-KGIICGRLLNMLLE 30 (37) Q Consensus 4 laiiivyflfekr-kgiicgrllnmlle 30 (37) -.||..||.+.+- ..+.|||+.+-|+. T Consensus 22 ~~Ii~~Yi~wRg~~~~~~~GriFKeL~k 49 (137) T 2i39_A 22 RTLLIRYILWRNDNDQTYYNDDFKKLML 49 (137) T ss_dssp HHHHHHHHHHHHHCCCSSCCHHHHHHHG T ss_pred HHHHHHHHEECCCCCCCHHHHHHHHHHH T ss_conf 9999999502389986558999999999 No 8 >>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} (A:1-206) Probab=4.42 E-value=3.1e+02 Score=11.92 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=11.1 Q ss_pred HHHHHHCCHHHHHHHH Q ss_conf 9997522417899999 Q 537021.9.peg.4 11 FLFEKRKGIICGRLLN 26 (37) Q Consensus 11 flfekrkgiicgrlln 26 (37) --+|.||||.-.||-. T Consensus 183 a~yerrkgi~~trlse 198 (206) T 1cii_A 183 AEYERRKGILDTRLSE 198 (206) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9888888899988888 No 9 >>3kus_A Polyadenylate-binding protein 1; protein-protein complex, acetylation, alternative splicing, cytoplasm, methylation, mRNA processing, mRNA splicing, nucleus; HET: EPE; 1.40A {Homo sapiens} PDB: 3kut_A 3kur_A 2x04_A (A:) Probab=4.25 E-value=3.2e+02 Score=11.85 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=0.0 Q ss_pred HHHHHHHHCCHHHHHHHHHHHH Q ss_conf 9999975224178999999984 Q 537021.9.peg.4 9 VYFLFEKRKGIICGRLLNMLLE 30 (37) Q Consensus 9 vyflfekrkgiicgrllnmlle 30 (37) .|-+.+...--.+|+.-.|||| T Consensus 28 Ly~~V~~~~p~~A~KITGMLLE 49 (88) T 3kus_A 28 LFPLIQAMHPTLAGKITGMLLE 49 (88) T ss_dssp HHHHHHHHCGGGHHHHHHHHHT T ss_pred HHHHHHHHCHHHCCCHHHHHHC T ss_conf 7899998780110324575525 No 10 >>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown function; 2.01A {Nostoc punctiforme pcc 73102} (A:1-92) Probab=4.21 E-value=1.4e+02 Score=13.69 Aligned_cols=10 Identities=70% Similarity=0.992 Sum_probs=0.0 Q ss_pred HHHHHHHHCC Q ss_conf 9846776369 Q 537021.9.peg.4 28 LLEEKSFLSN 37 (37) Q Consensus 28 lleeksflsn 37 (37) |.||||.|+. T Consensus 48 lieeksll~d 57 (92) T 3e56_A 48 LIEEKSLLSD 57 (92) T ss_dssp ECCCGGGSSC T ss_pred EEHHHHHCCC T ss_conf 3015531056 Done!