Query 537021.9.peg.455_1
Match_columns 37
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 18:54:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_455.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do9_A UPF0302 protein BA_1542 36.8 20 0.00085 17.1 2.7 32 6-37 14-46 (188)
2 2ayu_A Nucleosome assembly pro 9.9 57 0.0024 14.8 0.3 13 11-23 130-142 (417)
3 2k1k_A Ephrin type-A receptor 5.5 1.8E+02 0.0077 12.3 2.0 14 4-17 24-37 (38)
4 3fs3_A Nucleosome assembly pro 4.8 1.3E+02 0.0054 13.1 0.0 12 11-22 89-100 (359)
5 3kuj_A Polyadenylate-binding p 3.3 2.8E+02 0.012 11.4 2.5 22 10-31 29-50 (88)
6 1nmr_A Poly(A)-binding protein 2.9 3.1E+02 0.013 11.2 1.2 22 10-31 32-53 (85)
7 2zkq_g 40S ribosomal protein S 2.9 3.1E+02 0.013 11.1 1.3 18 13-30 61-78 (204)
8 2dyd_A Poly(A)-binding protein 2.8 3.1E+02 0.013 11.1 2.0 22 9-30 30-51 (85)
9 3e56_A Putative uncharacterize 2.7 1.7E+02 0.007 12.5 -1.0 10 28-37 48-57 (113)
10 1i2t_A HYD protein; four alpha 2.7 3.3E+02 0.014 11.0 2.7 22 9-30 9-30 (61)
No 1
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=36.83 E-value=20 Score=17.05 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=25.7
Q ss_pred HHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999997-52241789999999846776369
Q 537021.9.peg.4 6 IIIVYFLFE-KRKGIICGRLLNMLLEEKSFLSN 37 (37)
Q Consensus 6 iiivyflfe-krkgiicgrllnmlleeksflsn 37 (37)
--|.|||+. .-|.-+|.++||.++....+|.+
T Consensus 14 ~Fi~wfL~~y~lK~rea~wiLnyl~~~~~lL~~ 46 (188)
T 3do9_A 14 DFVKWFLNNYQLKQRECVWILNYLMSHDQLMHK 46 (188)
T ss_dssp HHHHHHHHHCCBSSTHHHHHHHHHHHCTTTTTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf 999999983454440599999999708998866
No 2
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=9.89 E-value=57 Score=14.83 Aligned_cols=13 Identities=38% Similarity=0.710 Sum_probs=10.6
Q ss_pred HHHHHHCCHHHHH
Q ss_conf 9997522417899
Q 537021.9.peg.4 11 FLFEKRKGIICGR 23 (37)
Q Consensus 11 flfekrkgiicgr 23 (37)
-||+||+.||+|.
T Consensus 130 PLy~kR~~IV~G~ 142 (417)
T 2ayu_A 130 PIWEQRSRIISGQ 142 (417)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCC
T ss_conf 3999999997588
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=5.46 E-value=1.8e+02 Score=12.31 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999997522
Q 537021.9.peg.4 4 LAIIIVYFLFEKRK 17 (37)
Q Consensus 4 laiiivyflfekrk 17 (37)
+|.+.-.|.|.+|+
T Consensus 24 ~alllg~~~fr~rr 37 (38)
T 2k1k_A 24 AALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHEECCC
T ss_conf 99999888410125
No 4
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, chaperone; 2.30A {Plasmodium falciparum 3D7} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=4.85 E-value=1.3e+02 Score=13.08 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=9.8
Q ss_pred HHHHHHCCHHHH
Q ss_conf 999752241789
Q 537021.9.peg.4 11 FLFEKRKGIICG 22 (37)
Q Consensus 11 flfekrkgiicg 22 (37)
-+|+||+-||.|
T Consensus 89 Ply~kR~~II~G 100 (359)
T 3fs3_A 89 PIYDKRREALVG 100 (359)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC
T ss_conf 499999999748
No 5
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, acetylation, alternative splicing, cytoplasm, methylation, mRNA processing, mRNA splicing; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 2rqg_B 2rqh_B 3kur_A 2x04_A
Probab=3.32 E-value=2.8e+02 Score=11.41 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=13.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9999752241789999999846
Q 537021.9.peg.4 10 YFLFEKRKGIICGRLLNMLLEE 31 (37)
Q Consensus 10 yflfekrkgiicgrllnmllee 31 (37)
|-+.....--.||+.-.||||-
T Consensus 29 y~~V~~~~p~~A~KITGMLLEm 50 (88)
T 3kuj_A 29 FPLIQAMHPTLAGKITGMLLEI 50 (88)
T ss_dssp HHHHHHHCTTTHHHHHHHHTTS
T ss_pred HHHHHHHCCCCCCCHHHHHHCC
T ss_conf 9999987810003245755168
No 6
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=2.90 E-value=3.1e+02 Score=11.17 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=14.0
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9999752241789999999846
Q 537021.9.peg.4 10 YFLFEKRKGIICGRLLNMLLEE 31 (37)
Q Consensus 10 yflfekrkgiicgrllnmllee 31 (37)
|-+......-.+|+.-.||||-
T Consensus 32 y~~V~~~~p~~AgKITGMLLEm 53 (85)
T 1nmr_A 32 YNHIVAINPAAAAKVTGMLLEM 53 (85)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCT
T ss_pred HHHHHHHCCCCCCCHHHHHHCC
T ss_conf 9999987821014256765258
No 7
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_G*
Probab=2.87 E-value=3.1e+02 Score=11.15 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=13.0
Q ss_pred HHHHCCHHHHHHHHHHHH
Q ss_conf 975224178999999984
Q 537021.9.peg.4 13 FEKRKGIICGRLLNMLLE 30 (37)
Q Consensus 13 fekrkgiicgrllnmlle 30 (37)
|.|.+--|..||.|+|.-
T Consensus 61 f~K~~~~iverliN~LM~ 78 (204)
T 2zkq_g 61 FRKAQCPIVERLTNSMMM 78 (204)
T ss_dssp --CCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 265568599999999999
No 8
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=2.84 E-value=3.1e+02 Score=11.13 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9999975224178999999984
Q 537021.9.peg.4 9 VYFLFEKRKGIICGRLLNMLLE 30 (37)
Q Consensus 9 vyflfekrkgiicgrllnmlle 30 (37)
.|-+.+...--.+|+.-.||||
T Consensus 30 Ly~~V~~~~p~~A~KITGMLLE 51 (85)
T 2dyd_A 30 LYPLVDQLEHDQAAKVTGMLLE 51 (85)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHCCCHHHHHCC
T ss_conf 8999998782212640210116
No 9
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown function; 2.01A {Nostoc punctiforme pcc 73102}
Probab=2.68 E-value=1.7e+02 Score=12.50 Aligned_cols=10 Identities=70% Similarity=0.992 Sum_probs=0.0
Q ss_pred HHHHHHHHCC
Q ss_conf 9846776369
Q 537021.9.peg.4 28 LLEEKSFLSN 37 (37)
Q Consensus 28 lleeksflsn 37 (37)
|.||||.++.
T Consensus 48 lieeksll~D 57 (113)
T 3e56_A 48 LIEEKSLLSD 57 (113)
T ss_dssp ECCCGGGSSC
T ss_pred EEHHHHHCCC
T ss_conf 3015531056
No 10
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1
Probab=2.67 E-value=3.3e+02 Score=11.03 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 9999975224178999999984
Q 537021.9.peg.4 9 VYFLFEKRKGIICGRLLNMLLE 30 (37)
Q Consensus 9 vyflfekrkgiicgrllnmlle 30 (37)
.|-+......-.+|+.-.||||
T Consensus 9 Lyp~V~~~~p~~A~KITGMLLE 30 (61)
T 1i2t_A 9 LYPRVQAMQPAFASKITGMLLE 30 (61)
T ss_dssp HHHHHHHHCGGGHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCCCEEEEEC
T ss_conf 5799998782225754132246
Done!