Query 537021.9.peg.455_1
Match_columns 37
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Tue May 24 19:48:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_455.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayua1 d.305.1.1 (A:70-370) N 6.9 53 0.0038 13.8 0.3 12 11-22 61-72 (301)
2 d1v54l_ f.23.6.1 (L:) Mitochon 4.1 1.4E+02 0.0099 11.8 1.6 11 2-12 19-29 (46)
3 d1i2ta_ a.144.1.1 (A:) hyperpl 3.3 1.6E+02 0.012 11.4 2.7 22 10-31 10-31 (61)
4 d1nmra_ a.144.1.1 (A:) poly(A) 3.0 1.7E+02 0.013 11.2 1.2 22 10-31 32-53 (85)
5 d1pkpa1 d.14.1.1 (A:78-148) Ri 2.9 1.4E+02 0.0099 11.8 0.0 16 16-31 25-40 (71)
6 d1ii2a2 c.109.1.1 (A:2-200) Ph 2.9 1.1E+02 0.0081 12.2 -0.5 10 13-22 167-176 (199)
7 d1j3ba2 c.109.1.1 (A:2-211) Ph 2.6 1.2E+02 0.0091 12.0 -0.5 10 13-22 178-187 (210)
8 d2qale1 d.14.1.1 (E:78-158) Ri 2.6 1.5E+02 0.011 11.5 -0.0 16 16-31 24-39 (81)
9 d2uube1 d.14.1.1 (E:74-154) Ri 2.1 1.9E+02 0.014 11.0 -0.0 15 16-30 24-38 (81)
10 d2e50a1 d.305.1.1 (A:1-222) Pr 2.1 2E+02 0.015 10.9 -0.0 11 12-22 67-77 (222)
No 1
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.91 E-value=53 Score=13.81 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=10.1
Q ss_pred HHHHHHCCHHHH
Q ss_conf 999752241789
Q 537021.9.peg.4 11 FLFEKRKGIICG 22 (37)
Q Consensus 11 flfekrkgiicg 22 (37)
-||++|+-||.|
T Consensus 61 ply~kR~~II~G 72 (301)
T d2ayua1 61 PIWEQRSRIISG 72 (301)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC
T ss_conf 599999999779
No 2
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.06 E-value=1.4e+02 Score=11.77 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q ss_conf 27999999999
Q 537021.9.peg.4 2 KLLAIIIVYFL 12 (37)
Q Consensus 2 kllaiiivyfl 12 (37)
+|+|..++||-
T Consensus 19 rLla~m~~~fG 29 (46)
T d1v54l_ 19 RLLAMMTLFFG 29 (46)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999980
No 3
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.26 E-value=1.6e+02 Score=11.38 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=13.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9999752241789999999846
Q 537021.9.peg.4 10 YFLFEKRKGIICGRLLNMLLEE 31 (37)
Q Consensus 10 yflfekrkgiicgrllnmllee 31 (37)
|-+......-.+|+.-.||||-
T Consensus 10 y~~V~~~~p~~A~KITGMLLEm 31 (61)
T d1i2ta_ 10 YPRVQAMQPAFASKITGMLLEL 31 (61)
T ss_dssp HHHHHHHCGGGHHHHHHHHTTS
T ss_pred HHHHHHHCHHHHCCHHHHHHCC
T ss_conf 8999987800101056877558
No 4
>d1nmra_ a.144.1.1 (A:) poly(A) binding protein {Protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Probab=3.01 E-value=1.7e+02 Score=11.24 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=13.6
Q ss_pred HHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9999752241789999999846
Q 537021.9.peg.4 10 YFLFEKRKGIICGRLLNMLLEE 31 (37)
Q Consensus 10 yflfekrkgiicgrllnmllee 31 (37)
|-+......-.+|+.-.||||-
T Consensus 32 yp~V~~~~p~~AgKITGMLLEm 53 (85)
T d1nmra_ 32 YNHIVAINPAAAAKVTGMLLEM 53 (85)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCT
T ss_pred HHHHHHHCCCCCCCHHHHHHCC
T ss_conf 9999987832135346876378
No 5
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.95 E-value=1.4e+02 Score=11.76 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=11.7
Q ss_pred HCCHHHHHHHHHHHHH
Q ss_conf 2241789999999846
Q 537021.9.peg.4 16 RKGIICGRLLNMLLEE 31 (37)
Q Consensus 16 rkgiicgrllnmllee 31 (37)
-.||+||+....++|-
T Consensus 25 GtGliag~~vr~il~l 40 (71)
T d1pkpa1 25 GTGVIAGGPARAVLEL 40 (71)
T ss_dssp TCCEESCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 9853157799999998
No 6
>d1ii2a2 c.109.1.1 (A:2-200) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}
Probab=2.85 E-value=1.1e+02 Score=12.19 Aligned_cols=10 Identities=40% Similarity=0.846 Sum_probs=5.0
Q ss_pred HHHHCCHHHH
Q ss_conf 9752241789
Q 537021.9.peg.4 13 FEKRKGIICG 22 (37)
Q Consensus 13 fekrkgiicg 22 (37)
|++|..+|+|
T Consensus 167 ~~~k~ilI~G 176 (199)
T d1ii2a2 167 FKTREQVILG 176 (199)
T ss_dssp TTTTEEEEES
T ss_pred CCCCEEEEEC
T ss_conf 5469799986
No 7
>d1j3ba2 c.109.1.1 (A:2-211) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}
Probab=2.64 E-value=1.2e+02 Score=11.96 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=4.8
Q ss_pred HHHHCCHHHH
Q ss_conf 9752241789
Q 537021.9.peg.4 13 FEKRKGIICG 22 (37)
Q Consensus 13 fekrkgiicg 22 (37)
|++|.-+|+|
T Consensus 178 f~~k~ilI~G 187 (210)
T d1j3ba2 178 FQRRLVLIVG 187 (210)
T ss_dssp TTTTEEEEES
T ss_pred CCCCEEEEEC
T ss_conf 3359899976
No 8
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.61 E-value=1.5e+02 Score=11.50 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=10.7
Q ss_pred HCCHHHHHHHHHHHHH
Q ss_conf 2241789999999846
Q 537021.9.peg.4 16 RKGIICGRLLNMLLEE 31 (37)
Q Consensus 16 rkgiicgrllnmllee 31 (37)
-.||+||+..-.++|-
T Consensus 24 GtGliag~~vr~ilel 39 (81)
T d2qale1 24 GTGIIAGGAMRAVLEV 39 (81)
T ss_dssp TSCEECCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 9841347799999998
No 9
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.14 E-value=1.9e+02 Score=10.99 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=9.6
Q ss_pred HCCHHHHHHHHHHHH
Q ss_conf 224178999999984
Q 537021.9.peg.4 16 RKGIICGRLLNMLLE 30 (37)
Q Consensus 16 rkgiicgrllnmlle 30 (37)
-.|++||...-..+|
T Consensus 24 GtGliag~~vr~ile 38 (81)
T d2uube1 24 GTGVIAGAVPRAILE 38 (81)
T ss_dssp TCCEECCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH
T ss_conf 986124579999999
No 10
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.06 E-value=2e+02 Score=10.90 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=0.0
Q ss_pred HHHHHCCHHHH
Q ss_conf 99752241789
Q 537021.9.peg.4 12 LFEKRKGIICG 22 (37)
Q Consensus 12 lfekrkgiicg 22 (37)
++++|+.||.|
T Consensus 67 ly~~R~~iI~g 77 (222)
T d2e50a1 67 FFQKRSELIAK 77 (222)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
T ss_conf 99998777514
Done!