HHsearch alignment for GI: peg_472 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.74  E-value=1.9e-07  Score=75.06  Aligned_cols=132  Identities=19%  Similarity=0.307  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             92848999999999982876-------7-062010787988889999999996146877788665878999779999779
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG   72 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~   72 (369)
T Consensus       511 ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs-vsrLIG  589 (823)
T CHL00095        511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHT-VSKLIG  589 (823)
T ss_pred             HCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-HHHHCC
T ss_conf             4076999999999999997089989997468998789988779999999999747820258853510155420-767458


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEE
Q ss_conf             87782224533223345556655544565420465237751156648001678999997212-----------2111466
Q 537021.9.peg.4   73 NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIF  141 (369)
Q Consensus        73 ~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil  141 (369)
T Consensus       590 aPPGYV--------Gy~eGG~LTeaVrr~Pys----VvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIIm  657 (823)
T CHL00095        590 SPPGYV--------GYNEGGQLTEAVRKKPYT----VVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM  657 (823)
T ss_pred             CCCCCC--------CCCCCCCHHHHHHCCCCE----EEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEE
T ss_conf             998766--------778788201988719986----99862131138899998876516884348999988431039997


Q ss_pred             EECC
Q ss_conf             5067
Q 537021.9.peg.4  142 ATTE  145 (369)
Q Consensus       142 ~t~~  145 (369)
T Consensus       658 TSNl  661 (823)
T CHL00095        658 TSNL  661 (823)
T ss_pred             CCCC
T ss_conf             1650