HHsearch alignment for GI: peg_472 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.74 E-value=1.9e-07 Score=75.06 Aligned_cols=132 Identities=19% Similarity=0.307 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHCCCC-------C-EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 92848999999999982876-------7-062010787988889999999996146877788665878999779999779
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRI-------A-QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG 72 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~-------~-ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~ 72 (369)
T Consensus 511 ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hs-vsrLIG 589 (823)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHT-VSKLIG 589 (823)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC-HHHHCC
T ss_conf 4076999999999999997089989997468998789988779999999999747820258853510155420-767458
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEE
Q ss_conf 87782224533223345556655544565420465237751156648001678999997212-----------2111466
Q 537021.9.peg.4 73 NHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIF 141 (369)
Q Consensus 73 ~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil 141 (369)
T Consensus 590 aPPGYV--------Gy~eGG~LTeaVrr~Pys----VvLfDEIEKAHpdV~nilLQvlDdG~LtD~~Gr~vdF~NtIIIm 657 (823)
T CHL00095 590 SPPGYV--------GYNEGGQLTEAVRKKPYT----VVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (823)
T ss_pred CCCCCC--------CCCCCCCHHHHHHCCCCE----EEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEEEE
T ss_conf 998766--------778788201988719986----99862131138899998876516884348999988431039997
Q ss_pred EECC
Q ss_conf 5067
Q 537021.9.peg.4 142 ATTE 145 (369)
Q Consensus 142 ~t~~ 145 (369)
T Consensus 658 TSNl 661 (823)
T CHL00095 658 TSNL 661 (823)
T ss_pred CCCC
T ss_conf 1650