HHsearch alignment for GI: peg_472 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.12  E-value=1.9e-10  Score=97.23  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECHHHC-----C----CCHHHHHHHHHHHCCCCCCEEEEECCCC--CCC---HHHHHH
Q ss_conf             5665554456542046523775115664-----8----0016789999972122111466506754--330---356754
Q 537021.9.peg.4   91 VREIIDQIYYKPISARFRVYIMDEVQML-----S----TAAFNGLLKTLEEPPPHVKFIFATTEIR--KIP---ITVLSR  156 (369)
Q Consensus        91 ir~l~~~~~~~p~~~~~kv~iid~a~~m-----~----~~a~NaLLK~lEEPp~~~~fil~t~~~~--~ll---~TI~SR  156 (369)
T Consensus       251 lk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLAR--GeL~~IGATT~~EYRk~iEKD~AL~RR  324 (786)
T COG0542         251 LKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYRKYIEKDAALERR  324 (786)
T ss_pred             HHHHHHHHHCCC----CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHCHHHHHC
T ss_conf             999999985179----84999823554057776666651256646778745--873799735589998873306677846


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCC
Q ss_conf             33321024540013567876431----0134562566445653167
Q 537021.9.peg.4  157 CQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASD  198 (369)
Q Consensus       157 cq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~  198 (369)
T Consensus       325 FQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~  370 (786)
T COG0542         325 FQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD  370 (786)
T ss_pred             CCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHH
T ss_conf             7510279989899999998778888770696433799999999998