HHsearch alignment for GI: peg_472 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.12 E-value=1.9e-10 Score=97.23 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECHHHC-----C----CCHHHHHHHHHHHCCCCCCEEEEECCCC--CCC---HHHHHH
Q ss_conf 5665554456542046523775115664-----8----0016789999972122111466506754--330---356754
Q 537021.9.peg.4 91 VREIIDQIYYKPISARFRVYIMDEVQML-----S----TAAFNGLLKTLEEPPPHVKFIFATTEIR--KIP---ITVLSR 156 (369)
Q Consensus 91 ir~l~~~~~~~p~~~~~kv~iid~a~~m-----~----~~a~NaLLK~lEEPp~~~~fil~t~~~~--~ll---~TI~SR 156 (369)
T Consensus 251 lk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLAR--GeL~~IGATT~~EYRk~iEKD~AL~RR 324 (786)
T COG0542 251 LKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYRKYIEKDAALERR 324 (786)
T ss_pred HHHHHHHHHCCC----CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHCHHHHHC
T ss_conf 999999985179----84999823554057776666651256646778745--873799735589998873306677846
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCC
Q ss_conf 33321024540013567876431----0134562566445653167
Q 537021.9.peg.4 157 CQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASD 198 (369)
Q Consensus 157 cq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~ 198 (369)
T Consensus 325 FQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~ 370 (786)
T COG0542 325 FQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD 370 (786)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHH
T ss_conf 7510279989899999998778888770696433799999999998