HHsearch alignment for GI: peg_472 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=98.51 E-value=2.6e-07 Score=74.02 Aligned_cols=197 Identities=26% Similarity=0.402 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHC---CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999999999982---876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKS---GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~---~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
T Consensus 80 LIG~~~~~~~~~eqik~~ap~~~~--vLi~GetGtGKel~A~~iH~-~-s~r~-~~~PFI~~-----NCa~~~en-~-~~ 147 (403)
T COG1221 80 LIGESPSLQELREQIKAYAPSGLP--VLIIGETGTGKELFARLIHA-L-SARR-AEAPFIAF-----NCAAYSEN-L-QE 147 (403)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCC--EEEECCCCCCHHHHHHHHHH-H-HHCC-CCCCEEEE-----EHHHHCCC-H-HH
T ss_conf 635688899999999861899984--79866887538899999998-6-1213-58987997-----77773767-7-77
Q ss_pred CCC----CCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----------CCCCCCEEE
Q ss_conf 224----533223345556-6555445654204652377511566480016789999972-----------122111466
Q 537021.9.peg.4 78 VEL----DAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----------PPPHVKFIF 141 (369)
Q Consensus 78 ~e~----~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----------Pp~~~~fil 141 (369)
T Consensus 148 ~eLFG~~kGa-ftGa~~~k~Glfe-------~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~ 219 (403)
T COG1221 148 AELFGHEKGA-FTGAQGGKAGLFE-------QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLIC 219 (403)
T ss_pred HHHHCCCCCE-EECCCCCCCCHHE-------ECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEE
T ss_conf 7773200000-0256678676420-------5279777656365379858999999987186576688888677740451
Q ss_pred EECC--CCCCCH--HHHHHHHHHH--CCCCCC--HHHHHHHH----HHHHHCCCC---CCHHHH-HHHHHCCCCCCCHHH
Q ss_conf 5067--543303--5675433321--024540--01356787----643101345---625664-456531676420011
Q 537021.9.peg.4 142 ATTE--IRKIPI--TVLSRCQRFD--LHRISI--GDLIELFT----KILQEESIE---FDPEAV-AMIARASDGSARDGL 205 (369)
Q Consensus 142 ~t~~--~~~ll~--TI~SRcq~~~--f~~l~~--~~i~~~L~----~i~~~E~i~---~d~~~l-~~ia~~s~GslR~Al 205 (369)
T Consensus 220 AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELk 299 (403)
T COG1221 220 ATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELK 299 (403)
T ss_pred CCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf 35668799987405255641675431897243555599999999999999739998888899999998488998399999
Q ss_pred HCCCCCCCHHHC
Q ss_conf 000111000000
Q 537021.9.peg.4 206 SLLDQAIARCND 217 (369)
Q Consensus 206 ~lLeq~i~~~~~ 217 (369)
T Consensus 300 N~Ve~~~~~~~~ 311 (403)
T COG1221 300 NLVERAVAQASG 311 (403)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997354