HHsearch alignment for GI: peg_472 and conserved domain: COG1221

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=98.51  E-value=2.6e-07  Score=74.02  Aligned_cols=197  Identities=26%  Similarity=0.402  Sum_probs=113.6

Q ss_pred             CCCHHHHHHHHHHHHHC---CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999999999982---876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKS---GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~---~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
T Consensus        80 LIG~~~~~~~~~eqik~~ap~~~~--vLi~GetGtGKel~A~~iH~-~-s~r~-~~~PFI~~-----NCa~~~en-~-~~  147 (403)
T COG1221          80 LIGESPSLQELREQIKAYAPSGLP--VLIIGETGTGKELFARLIHA-L-SARR-AEAPFIAF-----NCAAYSEN-L-QE  147 (403)
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCCC--EEEECCCCCCHHHHHHHHHH-H-HHCC-CCCCEEEE-----EHHHHCCC-H-HH
T ss_conf             635688899999999861899984--79866887538899999998-6-1213-58987997-----77773767-7-77


Q ss_pred             CCC----CCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----------CCCCCCEEE
Q ss_conf             224----533223345556-6555445654204652377511566480016789999972-----------122111466
Q 537021.9.peg.4   78 VEL----DAASHTSIDDVR-EIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----------PPPHVKFIF  141 (369)
Q Consensus        78 ~e~----~~~s~~~id~ir-~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----------Pp~~~~fil  141 (369)
T Consensus       148 ~eLFG~~kGa-ftGa~~~k~Glfe-------~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~  219 (403)
T COG1221         148 AELFGHEKGA-FTGAQGGKAGLFE-------QANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLIC  219 (403)
T ss_pred             HHHHCCCCCE-EECCCCCCCCHHE-------ECCCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEEE
T ss_conf             7773200000-0256678676420-------5279777656365379858999999987186576688888677740451


Q ss_pred             EECC--CCCCCH--HHHHHHHHHH--CCCCCC--HHHHHHHH----HHHHHCCCC---CCHHHH-HHHHHCCCCCCCHHH
Q ss_conf             5067--543303--5675433321--024540--01356787----643101345---625664-456531676420011
Q 537021.9.peg.4  142 ATTE--IRKIPI--TVLSRCQRFD--LHRISI--GDLIELFT----KILQEESIE---FDPEAV-AMIARASDGSARDGL  205 (369)
Q Consensus       142 ~t~~--~~~ll~--TI~SRcq~~~--f~~l~~--~~i~~~L~----~i~~~E~i~---~d~~~l-~~ia~~s~GslR~Al  205 (369)
T Consensus       220 AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELk  299 (403)
T COG1221         220 ATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELK  299 (403)
T ss_pred             CCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
T ss_conf             35668799987405255641675431897243555599999999999999739998888899999998488998399999


Q ss_pred             HCCCCCCCHHHC
Q ss_conf             000111000000
Q 537021.9.peg.4  206 SLLDQAIARCND  217 (369)
Q Consensus       206 ~lLeq~i~~~~~  217 (369)
T Consensus       300 N~Ve~~~~~~~~  311 (403)
T COG1221         300 NLVERAVAQASG  311 (403)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999997354