HHsearch alignment for GI: peg_472 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.22 E-value=7.5e-06 Score=63.28 Aligned_cols=170 Identities=20% Similarity=0.307 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHC-----------C-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 848999999999982-----------8-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4 3 GQKPMIKTLTNAFKS-----------G-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII 70 (369)
Q Consensus 3 Gq~~~~~~l~~~~~~-----------~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~ 70 (369)
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS--------ElVqKY- 225 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS--------ELVQKY- 225 (406)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCH--------HHHHHH-
T ss_conf 88999999999840336688899974999997127668999758899999872058669994219--------999998-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHHH-----CC
Q ss_conf 7987782224533223345556655544565420465237751156648-----------0016789999972-----12
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLEE-----PP 134 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lEE-----Pp 134 (369)
T Consensus 226 ---------i-G---EGaRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 226 ---------I-G---EGARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ---------H-C---CCHHHHHHHHHHHHHC----CCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf ---------3-4---1169999999987414----984999831122311113688885099999999999860588978
Q ss_pred CCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCC
Q ss_conf 211146650675433035675--43-3321024540013567876431013456256-644565316764
Q 537021.9.peg.4 135 PHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGS 200 (369)
Q Consensus 135 ~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~Gs 200 (369)
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~-IHt-rkM~l~~dvd~e~la~~~~g~ 356 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK-IHT-RKMNLADDVDLELLARLTEGF 356 (406)
T ss_pred CCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHH-HHH-HHCCCCCCCCHHHHHHHCCCC
T ss_conf 87689985588555576650887545301168989789999999-876-214676676999998753899