HHsearch alignment for GI: peg_472 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=98.22  E-value=7.5e-06  Score=63.28  Aligned_cols=170  Identities=20%  Similarity=0.307  Sum_probs=96.9

Q ss_pred             CHHHHHHHHHHHHHC-----------C-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             848999999999982-----------8-7670620107879888899999999961468777886658789997799997
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKS-----------G-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII   70 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~-----------~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~   70 (369)
T Consensus       155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS--------ElVqKY-  225 (406)
T COG1222         155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS--------ELVQKY-  225 (406)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCH--------HHHHHH-
T ss_conf             88999999999840336688899974999997127668999758899999872058669994219--------999998-


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-----------CCHHHHHHHHHHH-----CC
Q ss_conf             7987782224533223345556655544565420465237751156648-----------0016789999972-----12
Q 537021.9.peg.4   71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-----------TAAFNGLLKTLEE-----PP  134 (369)
Q Consensus        71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-----------~~a~NaLLK~lEE-----Pp  134 (369)
T Consensus       226 ---------i-G---EGaRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~  288 (406)
T COG1222         226 ---------I-G---EGARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR  288 (406)
T ss_pred             ---------H-C---CCHHHHHHHHHHHHHC----CCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             ---------3-4---1169999999987414----984999831122311113688885099999999999860588978


Q ss_pred             CCCCEEEEECCCCCCCHHHHH--HH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCC
Q ss_conf             211146650675433035675--43-3321024540013567876431013456256-644565316764
Q 537021.9.peg.4  135 PHVKFIFATTEIRKIPITVLS--RC-QRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGS  200 (369)
Q Consensus       135 ~~~~fil~t~~~~~ll~TI~S--Rc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~Gs  200 (369)
T Consensus       289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~-IHt-rkM~l~~dvd~e~la~~~~g~  356 (406)
T COG1222         289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK-IHT-RKMNLADDVDLELLARLTEGF  356 (406)
T ss_pred             CCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHH-HHH-HHCCCCCCCCHHHHHHHCCCC
T ss_conf             87689985588555576650887545301168989789999999-876-214676676999998753899