HHsearch alignment for GI: peg_472 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=98.01  E-value=3.2e-05  Score=58.62  Aligned_cols=200  Identities=19%  Similarity=0.274  Sum_probs=117.3

Q ss_pred             CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHH------
Q ss_conf             9284899999999998---28767062010787988889999999996146877788665-8789997799997------
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAII------   70 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~------   70 (369)
T Consensus       143 liG~S~am~~l~~~i~kvA~s~a~--VLI~GESGtGKElvAr~IH~~----S~R~~~PFVavNcaAip~~-l~ESELFGh  215 (464)
T COG2204         143 LVGESPAMQQLRRLIAKVAPSDAS--VLITGESGTGKELVARAIHQA----SPRAKGPFIAVNCAAIPEN-LLESELFGH  215 (464)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHH----CCCCCCCCEEEECCCCCHH-HHHHHHHCC
T ss_conf             520699999999999998477997--899778987589999999860----7445899256334648988-877776145


Q ss_pred             -CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCC
Q ss_conf             -7987782224533223345556655544565420465237751156648001678999997212-----------2111
Q 537021.9.peg.4   71 -RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVK  138 (369)
Q Consensus        71 -~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~  138 (369)
T Consensus       216 ekGAFT------GA~~~r~-------G~fE~--A~G--GTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR  278 (464)
T COG2204         216 EKGAFT------GAITRRI-------GRFEQ--ANG--GTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR  278 (464)
T ss_pred             CCCCCC------CCCCCCC-------CCEEE--CCC--CEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCEECEEEE
T ss_conf             656767------7643457-------61577--379--658732311099999999999987070673588860000169


Q ss_pred             EEEEECCC-------CCCCHHHHHHHHHHHC--CCCCC--HHH----HHHHHHHHHHCC---CCCCHHHHHHH-HHCCCC
Q ss_conf             46650675-------4330356754333210--24540--013----567876431013---45625664456-531676
Q 537021.9.peg.4  139 FIFATTEI-------RKIPITVLSRCQRFDL--HRISI--GDL----IELFTKILQEES---IEFDPEAVAMI-ARASDG  199 (369)
Q Consensus       139 fil~t~~~-------~~ll~TI~SRcq~~~f--~~l~~--~~i----~~~L~~i~~~E~---i~~d~~~l~~i-a~~s~G  199 (369)
T Consensus       279 iIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG  358 (464)
T COG2204         279 IIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG  358 (464)
T ss_pred             EEEECCCCHHHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCH
T ss_conf             99605778999988197378888652331104876223620079999999999999809998887999999997389981


Q ss_pred             CCCHHHHCCCCCCCHHHCC-CCHHHH
Q ss_conf             4200110001110000001-210322
Q 537021.9.peg.4  200 SARDGLSLLDQAIARCNDK-IVTSSV  224 (369)
Q Consensus       200 slR~Al~lLeq~i~~~~~~-i~~e~v  224 (369)
T Consensus       359 NVREL~N~ver~~il~~~~~i~~~~l  384 (464)
T COG2204         359 NVRELENVVERAVILSEGPEIEVEDL  384 (464)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHC
T ss_conf             89999999999985178654665441