HHsearch alignment for GI: peg_472 and conserved domain: COG3829
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].
Probab=95.19 E-value=0.14 Score=31.85 Aligned_cols=199 Identities=20% Similarity=0.263 Sum_probs=102.9
Q ss_pred CCCHHHHHH-HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCC
Q ss_conf 928489999-999999828767062010787988889999999996146877788665-878999779999779877822
Q 537021.9.peg.4 1 MIGQKPMIK-TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 1 iiGq~~~~~-~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~ 78 (369)
T Consensus 247 Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH---~~S~-R~~~PFIaiNCaAiPe-~LlESELF-G-y 319 (560)
T COG3829 247 IIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIH---NLSP-RANGPFIAINCAAIPE-TLLESELF-G-Y 319 (560)
T ss_pred HCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---HCCC-CCCCCEEEEECCCCCH-HHHHHHHH-C-C
T ss_conf 2058999999999998633899828995378866899999987---4484-3479807876433888-88888872-7-6
Q ss_pred C---CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf 2---453322334555665554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4 79 E---LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT 144 (369)
Q Consensus 79 e---~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~ 144 (369)
T Consensus 320 e~GAFTGA~~~GK~---GlfE-------~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN 389 (560)
T COG3829 320 EKGAFTGASKGGKP---GLFE-------LANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATN 389 (560)
T ss_pred CCCCCCCCCCCCCC---CCEE-------ECCCCEEEEHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCEEEEEEEEECCC
T ss_conf 77642464457997---6054-------4169837712320399899999999875353785378875356789994257
Q ss_pred C-CCCCCHHHHHHH------HHH--HCCCCC--CHHHHH----HHHHHHHHCC--CC-CCHHHHHHH-HHCCCCCCCHHH
Q ss_conf 7-543303567543------332--102454--001356----7876431013--45-625664456-531676420011
Q 537021.9.peg.4 145 E-IRKIPITVLSRC------QRF--DLHRIS--IGDLIE----LFTKILQEES--IE-FDPEAVAMI-ARASDGSARDGL 205 (369)
Q Consensus 145 ~-~~~ll~TI~SRc------q~~--~f~~l~--~~~i~~----~L~~i~~~E~--i~-~d~~~l~~i-a~~s~GslR~Al 205 (369)
T Consensus 390 ~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELe 469 (560)
T COG3829 390 RNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELE 469 (560)
T ss_pred CCHHHHHHCCCCHHHHEEEECEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 58999986396165530030401114777233820189999999999998728876668999999998689996099999
Q ss_pred HCCCCCCCHHH
Q ss_conf 00011100000
Q 537021.9.peg.4 206 SLLDQAIARCN 216 (369)
Q Consensus 206 ~lLeq~i~~~~ 216 (369)
T Consensus 470 NviER~v~~~~ 480 (560)
T COG3829 470 NVIERAVNLVE 480 (560)
T ss_pred HHHHHHHHCCC
T ss_conf 99999981068