HHsearch alignment for GI: peg_472 and conserved domain: KOG2004

Probab=98.88  E-value=1.7e-08  Score=82.76  Aligned_cols=172  Identities=24%  Similarity=0.403  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHCCCC-----CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             848999999999982876-----706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    3 GQKPMIKTLTNAFKSGRI-----AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         3 Gq~~~~~~l~~~~~~~~~-----~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
T Consensus       415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR-----------------fSvGG~tDv  477 (906)
T KOG2004         415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR-----------------FSVGGMTDV  477 (906)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEE-----------------EECCCCCCH
T ss_conf             168899999999998751466788379986899877321899999984874699-----------------853663427


Q ss_pred             CCCCCCCCCCHHHH-HHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCC----------------
Q ss_conf             22453322334555-66555445654204652377511566480----0167899999721221----------------
Q 537021.9.peg.4   78 VELDAASHTSIDDV-REIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPH----------------  136 (369)
Q Consensus        78 ~e~~~~s~~~id~i-r~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~----------------  136 (369)
T Consensus       478 AeIkGHRRTYVGAMPGkiIq~L--K~v~t~NPliLiDEvDKlG~g~qGDPasALLElLD-PEQNanFlDHYLdVp~DLSk  554 (906)
T KOG2004         478 AEIKGHRRTYVGAMPGKIIQCL--KKVKTENPLILIDEVDKLGSGHQGDPASALLELLD-PEQNANFLDHYLDVPVDLSK  554 (906)
T ss_pred             HHHCCCCEEEECCCCHHHHHHH--HHHCCCCCEEEEEHHHHHCCCCCCCHHHHHHHHCC-HHHCCCHHHHCCCCCCCHHH
T ss_conf             7642542110014884899999--86177886588532234178877986899987439-65355345420266421110


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHH----HHHHH-HH-----HHHCCCCCCHHHHHHHH
Q ss_conf             1146650675433035675433321024540013----56787-64-----31013456256644565
Q 537021.9.peg.4  137 VKFIFATTEIRKIPITVLSRCQRFDLHRISIGDL----IELFT-KI-----LQEESIEFDPEAVAMIA  194 (369)
Q Consensus       137 ~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i----~~~L~-~i-----~~~E~i~~d~~~l~~ia  194 (369)
T Consensus       555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI  622 (906)
T KOG2004         555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI  622 (906)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
T ss_conf             68898536445698566412232203672279899999984125789874998786586299999999