HHsearch alignment for GI: peg_472 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.76 E-value=8.4e-18 Score=151.48 Aligned_cols=179 Identities=25% Similarity=0.306 Sum_probs=139.7
Q ss_pred CCCHHHHHHHHHHHHHCCC-----CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 9284899999999998287-----67062010787988889999999996146877788665878999779999779877
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR-----IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~-----~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~ 75 (369)
T Consensus 27 fiGQ~~i~~~L~v~i~Aak~r~e~ldH-~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~le----------------- 88 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----------------- 88 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCC-----------------
T ss_conf 359599999999999999964999880-57658899889999999999868881562450016-----------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC------------------C
Q ss_conf 8222453322334555665554456542046523775115664800167899999721221------------------1
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH------------------V 137 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~------------------~ 137 (369)
T Consensus 89 -----------k~~DL~~iLt~l------~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pF 151 (328)
T PRK00080 89 -----------KAGDLAALLTNL------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -----------CHHHHHHHHHHC------CCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCE
T ss_conf -----------747899999608------878767650653248889988579877523457864786532455589983
Q ss_pred CEEEEECCCCCCCHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH
Q ss_conf 146650675433035675433-32102454001356787643101345625664456531676420011000111000
Q 537021.9.peg.4 138 KFIFATTEIRKIPITVLSRCQ-RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR 214 (369)
Q Consensus 138 ~fil~t~~~~~ll~TI~SRcq-~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~ 214 (369)
T Consensus 152 TLIGATTr~g~Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l~i~i~~~~~~eIA~rSRGTPRiAnrLLrRvrDf 229 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGIEIDEEGALEIARRSRGTPRIANRLLRRVRDF 229 (328)
T ss_pred EEEECCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 474013676657767897579336634589999999999999983988789999999986389839999999999999