HHsearch alignment for GI: peg_472 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=95.36  E-value=0.17  Score=31.17  Aligned_cols=126  Identities=19%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             67062010787988889999999996146877788665878999779-----9997798778222453322334555665
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVREI   94 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~l   94 (369)
T Consensus        96 kP~Vim~vGlqGsGKTTT~aKLA~~~kk~---g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~-~~~~dp~~i~~~a  171 (433)
T PRK00771         96 KPQTILLVGLQGSGKTTTAAKLARYFQKK---GLKVGVICADTWRPGAYEQLKQLCEKINVPFYGD-PKEKDAVKIVKEG  171 (433)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHH
T ss_conf             98589997378897899999999999977---9946785067883689999999998638873178-8999999999999


Q ss_pred             HHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             55445654204652377511566480016--789999972-12211146650675433035675
Q 537021.9.peg.4   95 IDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLS  155 (369)
Q Consensus        95 ~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~S  155 (369)
T Consensus       172 ~~~~------k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~  229 (433)
T PRK00771        172 LEKL------KKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKA  229 (433)
T ss_pred             HHHH------CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf             9984------569889997765210409999999999877579768998654422678999999