HHsearch alignment for GI: peg_472 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=95.36 E-value=0.17 Score=31.17 Aligned_cols=126 Identities=19% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 67062010787988889999999996146877788665878999779-----9997798778222453322334555665
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVREI 94 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~l 94 (369)
T Consensus 96 kP~Vim~vGlqGsGKTTT~aKLA~~~kk~---g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~-~~~~dp~~i~~~a 171 (433)
T PRK00771 96 KPQTILLVGLQGSGKTTTAAKLARYFQKK---GLKVGVICADTWRPGAYEQLKQLCEKINVPFYGD-PKEKDAVKIVKEG 171 (433)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHH
T ss_conf 98589997378897899999999999977---9946785067883689999999998638873178-8999999999999
Q ss_pred HHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 55445654204652377511566480016--789999972-12211146650675433035675
Q 537021.9.peg.4 95 IDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLS 155 (369)
Q Consensus 95 ~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~S 155 (369)
T Consensus 172 ~~~~------k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~ 229 (433)
T PRK00771 172 LEKL------KKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKA 229 (433)
T ss_pred HHHH------CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9984------569889997765210409999999999877579768998654422678999999