HHsearch alignment for GI: peg_472 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=99.96 E-value=1.5e-27 Score=223.44 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=186.3
Q ss_pred EECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 51156648001678999997212211146650675433035675433321024540013567876431013456256644
Q 537021.9.peg.4 112 MDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVA 191 (369)
Q Consensus 112 id~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~ 191 (369)
T Consensus 651 i~~a~~~t~d~~~~~~r~~~~~~~~~~~~~SCNYsSKIIePIQSRCavFRF~PL~~e~v~~RL~~Ia~~Egv~itedGle 730 (863)
T PRK04132 651 IKKEYIGYKDVYDITCHNDHSFIANGFVSHNCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQ 730 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 57888665779999987787642056179866760407416655624788368999999999999999749976778999
Q ss_pred HHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCCHHHHHH
Q ss_conf 565316764200110001110000001210322000135677777888876301363346788765-4304762135787
Q 537021.9.peg.4 192 MIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSS-QYDSGVNPSVILH 270 (369)
Q Consensus 192 ~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~-l~~~g~d~~~iL~ 270 (369)
T Consensus 731 AI~~~aeGDMRkAIN~L-Qsaa~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~A~~~L~~ll~~~GlS~~DII~ 809 (863)
T PRK04132 731 AILYVAEGDMRRAINVL-QAAAALDTKITDENVFKVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLV 809 (863)
T ss_pred HHHHHCCCCHHHHHHHH-HHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99997567489999999-99986169878889999708999899999999997299899999999999966969899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 77534899999974574122344998899999999862998999999999999999830278889999999999953304
Q 537021.9.peg.4 271 DLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 271 ~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
T Consensus 810 ~i~r~v~~-------------l~---------------ipe~~kv~li~~ige~e~Rl~eGa~e~IQL~ALlA~f~l~g~ 861 (863)
T PRK04132 810 QMHREVFN-------------LP---------------IDEPKKVYLADKIGEYNFRLVEGANEMIQLEALLAQFTLMGK 861 (863)
T ss_pred HHHHHHHH-------------CC---------------CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999961-------------79---------------987899999999976670331488869999999999997357