HHsearch alignment for GI: peg_472 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=99.74  E-value=2e-18  Score=156.03  Aligned_cols=133  Identities=29%  Similarity=0.449  Sum_probs=111.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
T Consensus        27 IVgQehIVkRLK~YVk~~smPH-LLFaGPPGvGKt~~al~lar~l~ge~wr~-----------------------nflel   82 (863)
T PRK04132         27 IVGQDHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENWRH-----------------------NFLEL   82 (863)
T ss_pred             HCCHHHHHHHHHHHHCCCCCCC-EEECCCCCCCCHHHHHHHHHHHHCCHHHH-----------------------HHHHH
T ss_conf             2274999999998862388854-43048998771447888888761431455-----------------------56641


Q ss_pred             CCCCCCCHHHHHHHHHHH-HHHHH-CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             533223345556655544-56542-046523775115664800167899999721221114665067543303567543
Q 537021.9.peg.4   81 DAASHTSIDDVREIIDQI-YYKPI-SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC  157 (369)
Q Consensus        81 ~~~s~~~id~ir~l~~~~-~~~p~-~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc  157 (369)
T Consensus        83 nas~~~~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~d~~~~~r~~~e~~~~~~~~~~~~~t~~~ki~t~~~re  161 (863)
T PRK04132         83 NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCLTGDAKIYTPDERE  161 (863)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCE
T ss_conf             4421236348888777506866457865424644365640101157787667774212444333134651266035645