HHsearch alignment for GI: peg_472 and conserved domain: PRK04132
>PRK04132 replication factor C small subunit; Provisional.
Probab=99.74 E-value=2e-18 Score=156.03 Aligned_cols=133 Identities=29% Similarity=0.449 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
T Consensus 27 IVgQehIVkRLK~YVk~~smPH-LLFaGPPGvGKt~~al~lar~l~ge~wr~-----------------------nflel 82 (863)
T PRK04132 27 IVGQDHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENWRH-----------------------NFLEL 82 (863)
T ss_pred HCCHHHHHHHHHHHHCCCCCCC-EEECCCCCCCCHHHHHHHHHHHHCCHHHH-----------------------HHHHH
T ss_conf 2274999999998862388854-43048998771447888888761431455-----------------------56641
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHHH-CCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 533223345556655544-56542-046523775115664800167899999721221114665067543303567543
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQI-YYKPI-SARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRC 157 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~-~~~p~-~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRc 157 (369)
T Consensus 83 nas~~~~~~~~~~~v~~~~~~~p~~~~~~k~~~~de~~~l~~d~~~~~r~~~e~~~~~~~~~~~~~t~~~ki~t~~~re 161 (863)
T PRK04132 83 NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCLTGDAKIYTPDERE 161 (863)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCE
T ss_conf 4421236348888777506866457865424644365640101157787667774212444333134651266035645