HHsearch alignment for GI: peg_472 and conserved domain: PRK04195
>PRK04195 replication factor C large subunit; Provisional.
Probab=100.00 E-value=3.6e-35 Score=279.58 Aligned_cols=235 Identities=21% Similarity=0.377 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHHHHHH---CCCCCE-EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 9284899999999998---287670-620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK---SGRIAQ-SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~---~~~~~h-a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d 76 (369)
T Consensus 16 ivg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~----------------------------~ 67 (403)
T PRK04195 16 VVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGW----------------------------E 67 (403)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----------------------------C
T ss_conf 858899999999999998739965746998893998799999999998499----------------------------8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH-HH-CCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCCCCEEEEECCC-CCC
Q ss_conf 2224533223345556655544565-42-04652377511566480----01678999997212211146650675-433
Q 537021.9.peg.4 77 VVELDAASHTSIDDVREIIDQIYYK-PI-SARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPHVKFIFATTEI-RKI 149 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~l~~~~~~~-p~-~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~~~fil~t~~~-~~l 149 (369)
T Consensus 68 viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s--~~PiIli~Nd~~~~~ 145 (403)
T PRK04195 68 VIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA--KNPIILTANDPYDPS 145 (403)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCC
T ss_conf 599771011478999999998760688778873499963434457244479999999998548--870899826845567
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf 03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4 150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA 229 (369)
Q Consensus 150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg 229 (369)
T Consensus 146 ~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~L-Q~~~~~~~~~~~~~~~~-~~ 223 (403)
T PRK04195 146 LRPLRNACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAINDL-QAIAEGGGRITLDDVKT-GE 223 (403)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH-HHHHCCCCCCCHHHHHH-HC
T ss_conf 17799766122179949999999999999976999999999999998797399999999-99974899775666664-13
Q ss_pred CCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 56777778888763013-633467887654304762135787
Q 537021.9.peg.4 230 LADRNRIMDLFGYLIKG-DIINVLQEFSSQYDSGVNPSVILH 270 (369)
Q Consensus 230 ~~~~~~i~~Ll~ai~~~-d~~~al~~l~~l~~~g~d~~~iL~ 270 (369)
T Consensus 224 rd~~~~if~~~~~if~~~~~~~a~~~~~---~~d~dpd~~~~ 262 (403)
T PRK04195 224 RDREESIFEALDAVFKSRNYDQALEASY---DVDEDPDDLIQ 262 (403)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHH---CCCCCHHHHHH
T ss_conf 5231438999999975698999999885---24799899999