HHsearch alignment for GI: peg_472 and conserved domain: PRK04195

>PRK04195 replication factor C large subunit; Provisional.
Probab=100.00  E-value=3.6e-35  Score=279.58  Aligned_cols=235  Identities=21%  Similarity=0.377  Sum_probs=187.2

Q ss_pred             CCCHHHHHHHHHHHHH---CCCCCE-EEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             9284899999999998---287670-620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFK---SGRIAQ-SYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD   76 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~---~~~~~h-a~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d   76 (369)
T Consensus        16 ivg~~~~v~~l~~Wl~~w~~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~----------------------------~   67 (403)
T PRK04195         16 VVGNEKAKKQLREWIESWLKGKPPKKALLLYGPPGVGKTSLAHALANDYGW----------------------------E   67 (403)
T ss_pred             HHCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC----------------------------C
T ss_conf             858899999999999998739965746998893998799999999998499----------------------------8


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHH-HH-CCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCCCCEEEEECCC-CCC
Q ss_conf             2224533223345556655544565-42-04652377511566480----01678999997212211146650675-433
Q 537021.9.peg.4   77 VVELDAASHTSIDDVREIIDQIYYK-PI-SARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPHVKFIFATTEI-RKI  149 (369)
Q Consensus        77 ~~e~~~~s~~~id~ir~l~~~~~~~-p~-~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~~~fil~t~~~-~~l  149 (369)
T Consensus        68 viElNASD~R~~~~I~~~i~~~~~~~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s--~~PiIli~Nd~~~~~  145 (403)
T PRK04195         68 VIELNASDQRTKDVIERVAGEASTSGSLFGAKRKLILLDEVDGIHGNADRGGVRAILEIIKKA--KNPIILTANDPYDPS  145 (403)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCC
T ss_conf             599771011478999999998760688778873499963434457244479999999998548--870899826845567


Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf             03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4  150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA  229 (369)
Q Consensus       150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg  229 (369)
T Consensus       146 ~~~lrs~c~~i~F~~~~~~~I~~~L~~I~~~Egi~i~~~aL~~Ia~~s~GDlR~aIN~L-Q~~~~~~~~~~~~~~~~-~~  223 (403)
T PRK04195        146 LRPLRNACLMIEFKRLSKRSIVPVLKRICRKEGIECEEEALREIAERSGGDLRSAINDL-QAIAEGGGRITLDDVKT-GE  223 (403)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH-HHHHCCCCCCCHHHHHH-HC
T ss_conf             17799766122179949999999999999976999999999999998797399999999-99974899775666664-13


Q ss_pred             CCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             56777778888763013-633467887654304762135787
Q 537021.9.peg.4  230 LADRNRIMDLFGYLIKG-DIINVLQEFSSQYDSGVNPSVILH  270 (369)
Q Consensus       230 ~~~~~~i~~Ll~ai~~~-d~~~al~~l~~l~~~g~d~~~iL~  270 (369)
T Consensus       224 rd~~~~if~~~~~if~~~~~~~a~~~~~---~~d~dpd~~~~  262 (403)
T PRK04195        224 RDREESIFEALDAVFKSRNYDQALEASY---DVDEDPDDLIQ  262 (403)
T ss_pred             CCCCCCHHHHHHHHHCCCCHHHHHHHHH---CCCCCHHHHHH
T ss_conf             5231438999999975698999999885---24799899999