HHsearch alignment for GI: peg_472 and conserved domain: PRK05574

>PRK05574 holA DNA polymerase III subunit delta; Reviewed.
Probab=99.93  E-value=1.2e-23  Score=194.67  Aligned_cols=310  Identities=17%  Similarity=0.210  Sum_probs=252.1

Q ss_pred             HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf             99999982876706201078798888999999999614687778866587899977999977987782224533223345
Q 537021.9.peg.4   10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSID   89 (369)
Q Consensus        10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id   89 (369)
T Consensus         6 ~l~~~lkk~-l~pvyli~G~e~~li~~~~~~i~~~~~~~~~~----------------------~~n~~~~d~~~-~---   58 (336)
T PRK05574          6 QLEAHLKKG-LAPVYLLYGDEPLLLQEAKDAIRAAARAQGFD----------------------ERNVFTVDGSE-T---   58 (336)
T ss_pred             HHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC----------------------CEEEEEEECCC-C---
T ss_conf             999998278-98679998586999999999999986077865----------------------30589971686-9---


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCCCCEEEEECCC--C------CCCHHHHHHH
Q ss_conf             5566555445654204652377511566480----01678999997212211146650675--4------3303567543
Q 537021.9.peg.4   90 DVREIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPHVKFIFATTEI--R------KIPITVLSRC  157 (369)
Q Consensus        90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~~~fil~t~~~--~------~ll~TI~SRc  157 (369)
T Consensus        59 ~~~~l~~~~~t~slf~~krlViv~~~~~~~~k~~~~~l~~l~~~l~~~~~~~~lvli~~~~~~d~~~k~~k~~k~l~~~~  138 (336)
T PRK05574         59 DWDDVLEACQSLPLFSDRKLVELRLPEGLTGKKGEEALKRLEAYLENPLPHTDLLLLAPLPKLDKRKEKSAWFKALKKKA  138 (336)
T ss_pred             CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCE
T ss_conf             99999998648997789759999888766531137999999998707999976999987786336888899999998480


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC-CCCHHHHHHCCCCCCHHHH
Q ss_conf             332102454001356787643101345625664456531676420011000111000000-1210322000135677777
Q 537021.9.peg.4  158 QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND-KIVTSSVRLMLALADRNRI  236 (369)
Q Consensus       158 q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~-~i~~e~v~~llg~~~~~~i  236 (369)
T Consensus       139 ~~i~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~It~~dV~~~v~~~~~~~~  218 (336)
T PRK05574        139 VVVEAQTPKEAELPQWIQQRLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLYPDGKITLEDVEEAVPDSARFDV  218 (336)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCH
T ss_conf             79980699989999999999998499989899999999721139999999999998378888789999998616433567


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             888876301363346788765430476213578777534899999974574-------1223449988999999998629
Q 537021.9.peg.4  237 MDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE-------MADTLLYSEAENARALQYSKEV  309 (369)
Q Consensus       237 ~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~-------~~~~~~~~~~e~~~i~~~a~~i  309 (369)
T Consensus       219 f~L~dai~~~~~~~al~~l~~l~~~~~~~~~il~~l~~~~r~l~~ik~~~~~g~~~~~i~~~l~i~~~~~~~~~~~~~~~  298 (336)
T PRK05574        219 FDLVDAILAGKIARALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILLQQGYPLQQLFKELRVWPYRRKLALRALQRL  298 (336)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf             99999998789999999999999779972999999999999999999998769999999988399999999999999729


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9899999999999999983027888999999999995
Q 537021.9.peg.4  310 SITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA  346 (369)
Q Consensus       310 ~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~  346 (369)
T Consensus       299 s~~~L~~~l~~l~~~D~~iK~~~d~~~~lEl~ll~l~  335 (336)
T PRK05574        299 SLKQLEQAIQLLAETDRQIKTDYDKDLWLELFLLSLL  335 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             9999999999999999997189995499999999842