HHsearch alignment for GI: peg_472 and conserved domain: PRK05574
>PRK05574 holA DNA polymerase III subunit delta; Reviewed.
Probab=99.93 E-value=1.2e-23 Score=194.67 Aligned_cols=310 Identities=17% Similarity=0.210 Sum_probs=252.1
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999982876706201078798888999999999614687778866587899977999977987782224533223345
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSID 89 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id 89 (369)
T Consensus 6 ~l~~~lkk~-l~pvyli~G~e~~li~~~~~~i~~~~~~~~~~----------------------~~n~~~~d~~~-~--- 58 (336)
T PRK05574 6 QLEAHLKKG-LAPVYLLYGDEPLLLQEAKDAIRAAARAQGFD----------------------ERNVFTVDGSE-T--- 58 (336)
T ss_pred HHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC----------------------CEEEEEEECCC-C---
T ss_conf 999998278-98679998586999999999999986077865----------------------30589971686-9---
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHHHCCC----CHHHHHHHHHHHCCCCCCEEEEECCC--C------CCCHHHHHHH
Q ss_conf 5566555445654204652377511566480----01678999997212211146650675--4------3303567543
Q 537021.9.peg.4 90 DVREIIDQIYYKPISARFRVYIMDEVQMLST----AAFNGLLKTLEEPPPHVKFIFATTEI--R------KIPITVLSRC 157 (369)
Q Consensus 90 ~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~----~a~NaLLK~lEEPp~~~~fil~t~~~--~------~ll~TI~SRc 157 (369)
T Consensus 59 ~~~~l~~~~~t~slf~~krlViv~~~~~~~~k~~~~~l~~l~~~l~~~~~~~~lvli~~~~~~d~~~k~~k~~k~l~~~~ 138 (336)
T PRK05574 59 DWDDVLEACQSLPLFSDRKLVELRLPEGLTGKKGEEALKRLEAYLENPLPHTDLLLLAPLPKLDKRKEKSAWFKALKKKA 138 (336)
T ss_pred CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCE
T ss_conf 99999998648997789759999888766531137999999998707999976999987786336888899999998480
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC-CCCHHHHHHCCCCCCHHHH
Q ss_conf 332102454001356787643101345625664456531676420011000111000000-1210322000135677777
Q 537021.9.peg.4 158 QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND-KIVTSSVRLMLALADRNRI 236 (369)
Q Consensus 158 q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~-~i~~e~v~~llg~~~~~~i 236 (369)
T Consensus 139 ~~i~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~It~~dV~~~v~~~~~~~~ 218 (336)
T PRK05574 139 VVVEAQTPKEAELPQWIQQRLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLYPDGKITLEDVEEAVPDSARFDV 218 (336)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCH
T ss_conf 79980699989999999999998499989899999999721139999999999998378888789999998616433567
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC-------CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 888876301363346788765430476213578777534899999974574-------1223449988999999998629
Q 537021.9.peg.4 237 MDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPE-------MADTLLYSEAENARALQYSKEV 309 (369)
Q Consensus 237 ~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~-------~~~~~~~~~~e~~~i~~~a~~i 309 (369)
T Consensus 219 f~L~dai~~~~~~~al~~l~~l~~~~~~~~~il~~l~~~~r~l~~ik~~~~~g~~~~~i~~~l~i~~~~~~~~~~~~~~~ 298 (336)
T PRK05574 219 FDLVDAILAGKIARALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILLQQGYPLQQLFKELRVWPYRRKLALRALQRL 298 (336)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 99999998789999999999999779972999999999999999999998769999999988399999999999999729
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9899999999999999983027888999999999995
Q 537021.9.peg.4 310 SITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346 (369)
Q Consensus 310 ~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~ 346 (369)
T Consensus 299 s~~~L~~~l~~l~~~D~~iK~~~d~~~~lEl~ll~l~ 335 (336)
T PRK05574 299 SLKQLEQAIQLLAETDRQIKTDYDKDLWLELFLLSLL 335 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999999999999999997189995499999999842