HHsearch alignment for GI: peg_472 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.96 E-value=2.7e-08 Score=81.33 Aligned_cols=197 Identities=14% Similarity=0.201 Sum_probs=126.5
Q ss_pred CCC-HHHHHHHHHHHHHCCC--CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 928-4899999999998287--6706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIG-QKPMIKTLTNAFKSGR--IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiG-q~~~~~~l~~~~~~~~--~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
T Consensus 22 i~g~N~~a~~~~~~l~~~~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~-------------------------~~~ 76 (234)
T PRK05642 22 YPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG-------------------------EPA 76 (234)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-------------------------CCE
T ss_conf 7187599999999987606787788389988999988999999999998079-------------------------967
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC-CCCCEEEEECC-CCC---CC
Q ss_conf 224533223345556655544565420465237751156648--001678999997212-21114665067-543---30
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP-PHVKFIFATTE-IRK---IP 150 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp-~~~~fil~t~~-~~~---ll 150 (369)
T Consensus 77 ~yl~~~~--~~~~~~~~~~~l------~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l 148 (234)
T PRK05642 77 VYLPLAE--LLDRGPELLDNL------EQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPVKL 148 (234)
T ss_pred EEEEHHH--HHHHHHHHHHHH------HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCH
T ss_conf 9978999--875449998624------22798989364554688599999999999999839959995787955523001
Q ss_pred HHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH---HHCCCCHHHH
Q ss_conf 3567543---332102454001356787643101345625664456531676420011000111000---0001210322
Q 537021.9.peg.4 151 ITVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR---CNDKIVTSSV 224 (369)
Q Consensus 151 ~TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~---~~~~i~~e~v 224 (369)
T Consensus 149 ~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTiplv 228 (234)
T PRK05642 149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFL 228 (234)
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 67999995781275148998999999999977546899989999999973588999999999999999983899999999
Q ss_pred HHCCCC
Q ss_conf 000135
Q 537021.9.peg.4 225 RLMLAL 230 (369)
Q Consensus 225 ~~llg~ 230 (369)
T Consensus 229 k~vLg~ 234 (234)
T PRK05642 229 KETLGW 234 (234)
T ss_pred HHHHCC
T ss_conf 998385