HHsearch alignment for GI: peg_472 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.08  E-value=0.01  Score=40.22  Aligned_cols=117  Identities=18%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHH-HCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH------
Q ss_conf             706201078798888999999999-614687-778866587899977999977987782224533223345556------
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARS-LNYKTA-HIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR------   92 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~-l~c~~~-~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir------   92 (369)
T Consensus       210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~------------------DtyRig-----A~eQLk~Ya~il  266 (412)
T PRK05703        210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL------------------DTYRIG-----AVEQLKTYAKIM  266 (412)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE------------------CCCCHH-----HHHHHHHHHHHC
T ss_conf             736999888887567699999999999729981799983------------------767777-----999999999971


Q ss_pred             -----------HHHHHHHHHHHCCCCCEEEEECHHHCCCCH-H-HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             -----------655544565420465237751156648001-6-789999972-12211146650675433035675433
Q 537021.9.peg.4   93 -----------EIIDQIYYKPISARFRVYIMDEVQMLSTAA-F-NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        93 -----------~l~~~~~~~p~~~~~kv~iid~a~~m~~~a-~-NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
T Consensus       267 gvp~~v~~~~~~l~~al---~~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~  343 (412)
T PRK05703        267 GIPVKVAYDPKELAKAL---EQLANCDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFS  343 (412)
T ss_pred             CCEEEEECCHHHHHHHH---HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             97379847999999999---871589979996898897899999999999862488718999759899899999999846


Q ss_pred             HHHCC
Q ss_conf             32102
Q 537021.9.peg.4  159 RFDLH  163 (369)
Q Consensus       159 ~~~f~  163 (369)
T Consensus       344 ~~~~~  348 (412)
T PRK05703        344 RLPLD  348 (412)
T ss_pred             CCCCC
T ss_conf             79998