HHsearch alignment for GI: peg_472 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.08 E-value=0.01 Score=40.22 Aligned_cols=117 Identities=18% Similarity=0.280 Sum_probs=61.7
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHH-HCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH------
Q ss_conf 706201078798888999999999-614687-778866587899977999977987782224533223345556------
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARS-LNYKTA-HIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVR------ 92 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~-l~c~~~-~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir------ 92 (369)
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~------------------DtyRig-----A~eQLk~Ya~il 266 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL------------------DTYRIG-----AVEQLKTYAKIM 266 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE------------------CCCCHH-----HHHHHHHHHHHC
T ss_conf 736999888887567699999999999729981799983------------------767777-----999999999971
Q ss_pred -----------HHHHHHHHHHHCCCCCEEEEECHHHCCCCH-H-HHHHHHHHH-CCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf -----------655544565420465237751156648001-6-789999972-12211146650675433035675433
Q 537021.9.peg.4 93 -----------EIIDQIYYKPISARFRVYIMDEVQMLSTAA-F-NGLLKTLEE-PPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 93 -----------~l~~~~~~~p~~~~~kv~iid~a~~m~~~a-~-NaLLK~lEE-Pp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
T Consensus 267 gvp~~v~~~~~~l~~al---~~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat~~~~dl~~i~~~f~ 343 (412)
T PRK05703 267 GIPVKVAYDPKELAKAL---EQLANCDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSATTKYRDLKDIVKHFS 343 (412)
T ss_pred CCEEEEECCHHHHHHHH---HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 97379847999999999---871589979996898897899999999999862488718999759899899999999846
Q ss_pred HHHCC
Q ss_conf 32102
Q 537021.9.peg.4 159 RFDLH 163 (369)
Q Consensus 159 ~~~f~ 163 (369)
T Consensus 344 ~~~~~ 348 (412)
T PRK05703 344 RLPLD 348 (412)
T ss_pred CCCCC
T ss_conf 79998