HHsearch alignment for GI: peg_472 and conserved domain: PRK05818
>PRK05818 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=380.94 Aligned_cols=250 Identities=18% Similarity=0.220 Sum_probs=220.6
Q ss_pred CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf 67062010787988889999999996146877788665878999779999779877822245332-23345556655544
Q 537021.9.peg.4 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS-HTSIDDVREIIDQI 98 (369)
Q Consensus 20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s-~~~id~ir~l~~~~ 98 (369)
T Consensus 7 ~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~------~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l 80 (262)
T PRK05818 7 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN------GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKL 80 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 98505664487764699999999986228999------999888627867558999779971664557798999999998
Q ss_pred HHHHHC-CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 565420-4652377511566480016789999972122111466506754330356754333210245400135678764
Q 537021.9.peg.4 99 YYKPIS-ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKI 177 (369)
Q Consensus 99 ~~~p~~-~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i 177 (369)
T Consensus 81 ~~~s~e~~g~KV~II~~Ae~Mt~~AANALLKtLEEPp~nt~fIL~t~~~~~LLPTIrSRC~~~~~~~~~~~~~~~~~~~~ 160 (262)
T PRK05818 81 NRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESND 160 (262)
T ss_pred HHCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 21140028848999877787499999999986128987838999738814373088877014466643466788887408
Q ss_pred HHHCCCCCCHHHHH-HHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHH---CCCHHHHHH
Q ss_conf 31013456256644-56531676420011000111000000121032200013567777788887630---136334678
Q 537021.9.peg.4 178 LQEESIEFDPEAVA-MIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLI---KGDIINVLQ 253 (369)
Q Consensus 178 ~~~E~i~~d~~~l~-~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~---~~d~~~al~ 253 (369)
T Consensus 161 ~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~~~n~~~~~~~~~~l~~~i~~~~i~~ll~~~~~~~d~~~k~~~~ 240 (262)
T PRK05818 161 RYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLIPTVDPEKKSKLY 240 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 88987641011079999886167688899999999875688433999999983135999999998731266852268899
Q ss_pred HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8765430476213578777534
Q 537021.9.peg.4 254 EFSSQYDSGVNPSVILHDLAEF 275 (369)
Q Consensus 254 ~l~~l~~~g~d~~~iL~~Ll~~ 275 (369)
T Consensus 241 ~~~~~~~~n~~~~~l~~~~is~ 262 (262)
T PRK05818 241 NLLSNLKYNLPKTALFANIISW 262 (262)
T ss_pred HHHHHHHCCCCHHHHHHHHHCC
T ss_conf 8998774497689999997359