HHsearch alignment for GI: peg_472 and conserved domain: PRK05818

>PRK05818 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=380.94  Aligned_cols=250  Identities=18%  Similarity=0.220  Sum_probs=220.6

Q ss_pred             CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHH
Q ss_conf             67062010787988889999999996146877788665878999779999779877822245332-23345556655544
Q 537021.9.peg.4   20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS-HTSIDDVREIIDQI   98 (369)
Q Consensus        20 ~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s-~~~id~ir~l~~~~   98 (369)
T Consensus         7 ~~halLl~~~~G~~~~~~~~~~~k~LlC~~~~------~PCG~C~sC~~i~~g~HPD~~~i~pe~~sIkieqir~li~~l   80 (262)
T PRK05818          7 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKAN------GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKL   80 (262)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC------CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             98505664487764699999999986228999------999888627867558999779971664557798999999998


Q ss_pred             HHHHHC-CCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             565420-4652377511566480016789999972122111466506754330356754333210245400135678764
Q 537021.9.peg.4   99 YYKPIS-ARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKI  177 (369)
Q Consensus        99 ~~~p~~-~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i  177 (369)
T Consensus        81 ~~~s~e~~g~KV~II~~Ae~Mt~~AANALLKtLEEPp~nt~fIL~t~~~~~LLPTIrSRC~~~~~~~~~~~~~~~~~~~~  160 (262)
T PRK05818         81 NRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESND  160 (262)
T ss_pred             HHCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             21140028848999877787499999999986128987838999738814373088877014466643466788887408


Q ss_pred             HHHCCCCCCHHHHH-HHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHH---CCCHHHHHH
Q ss_conf             31013456256644-56531676420011000111000000121032200013567777788887630---136334678
Q 537021.9.peg.4  178 LQEESIEFDPEAVA-MIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLI---KGDIINVLQ  253 (369)
Q Consensus       178 ~~~E~i~~d~~~l~-~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~---~~d~~~al~  253 (369)
T Consensus       161 ~~~~~i~~~~~s~de~~~~~~~gs~~~~l~il~~~i~~~n~~~~~~~~~~l~~~i~~~~i~~ll~~~~~~~d~~~k~~~~  240 (262)
T PRK05818        161 RYFQYILLSFYSVDEQLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLIPTVDPEKKSKLY  240 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             88987641011079999886167688899999999875688433999999983135999999998731266852268899


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             8765430476213578777534
Q 537021.9.peg.4  254 EFSSQYDSGVNPSVILHDLAEF  275 (369)
Q Consensus       254 ~l~~l~~~g~d~~~iL~~Ll~~  275 (369)
T Consensus       241 ~~~~~~~~n~~~~~l~~~~is~  262 (262)
T PRK05818        241 NLLSNLKYNLPKTALFANIISW  262 (262)
T ss_pred             HHHHHHHCCCCHHHHHHHHHCC
T ss_conf             8998774497689999997359