HHsearch alignment for GI: peg_472 and conserved domain: PRK06581
>PRK06581 DNA polymerase III subunit delta'; Validated.
Probab=99.96 E-value=1.1e-29 Score=239.19 Aligned_cols=142 Identities=20% Similarity=0.307 Sum_probs=117.7
Q ss_pred HHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC---
Q ss_conf 9999999998287670620107879888899999999---9614687778866587899977999977987782224---
Q 537021.9.peg.4 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIAR---SLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL--- 80 (369)
Q Consensus 7 ~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~---~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~--- 80 (369)
T Consensus 1 ~ie~L~n~lknnKlsns~l~~~~---N~~~~l~~~~~fi~~~~~~~~~~------------------le~~pd~~~i~~~ 59 (263)
T PRK06581 1 IIERLEFNLKHNKLYNSWLIEAE---NIEQALKDLEKFIYIKLFKNSIP------------------LENNPDYHFIARE 59 (263)
T ss_pred CHHHHHHHHHCCHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCC------------------CCCCCCHHHHHHH
T ss_conf 95789888741324466643078---86799999999999998626865------------------2358328887420
Q ss_pred -CC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf -53---32233455566555445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4 81 -DA---ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR 156 (369)
Q Consensus 81 -~~---~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR 156 (369)
T Consensus 60 ~~~~sn~KnI~IdQIR~L~~fl~~ts~~s~~KV~IId~Ae~mn~~AaNALLK~LEEPP~nt~iiLiT~~~~~LLpTIrSR 139 (263)
T PRK06581 60 TSATSNAKNISIEQIRKLQDFLNKTSAISGYKVAIIYSADLMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSR 139 (263)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCCEEEEEECCHHHCCCHHHHC
T ss_conf 34566567357999999999963475468945999947677498989989987418987828999869824461465434
Q ss_pred HHHHHCCCCCCHH
Q ss_conf 3332102454001
Q 537021.9.peg.4 157 CQRFDLHRISIGD 169 (369)
Q Consensus 157 cq~~~f~~l~~~~ 169 (369)
T Consensus 140 Cq~inf~s~~~~~ 152 (263)
T PRK06581 140 CFKINCRSSALHA 152 (263)
T ss_pred CEEEECCCCHHHH
T ss_conf 5787358810444