HHsearch alignment for GI: peg_472 and conserved domain: PRK06585
>PRK06585 holA DNA polymerase III subunit delta; Reviewed.
Probab=99.84 E-value=2.6e-18 Score=155.19 Aligned_cols=312 Identities=15% Similarity=0.137 Sum_probs=238.5
Q ss_pred HHHHHHC--CCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 9999982--87670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4 11 LTNAFKS--GRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI 88 (369)
Q Consensus 11 l~~~~~~--~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i 88 (369)
T Consensus 9 ~~~f~~~p~~~~~-~~LlyG~d~glv~e~~~~l~~~~~~~~-~~~---------------------f~~~~l~~~e-l~- 63 (343)
T PRK06585 9 IDRFLARPDGKIR-AVLLYGPDRGLVRERARRLAKSVVDDP-DDP---------------------FAVVRLDGDE-LD- 63 (343)
T ss_pred HHHHHHCCCCCCE-EEEEECCCHHHHHHHHHHHHHHHCCCC-CCC---------------------CEEEEECHHH-HH-
T ss_conf 9999819864765-899963876479999999999725566-787---------------------4157747998-83-
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH------HHHHHHHC
Q ss_conf 555665554456542046523775115664800167899999721221114665067543303567------54333210
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL------SRCQRFDL 162 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~------SRcq~~~f 162 (369)
T Consensus 64 ~d~~~l~de~~t~slF~~~rlI~i~~~~---d~~~~~l~~~l~~~~~~~~lIi~a~~L~k~-skLrk~~e~~~~~~~i~c 139 (343)
T PRK06585 64 ADPARLEDEANTISLFGGRRLIWVRAGG---KSLAAALKALLAEPPGDAFIVIEAGDLKKG-SSLRKLFETAASAAAIPC 139 (343)
T ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCC---HHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHHHHCCCEEEEEE
T ss_conf 3999999998476876898489972687---256999999981789982899973897731-189999986478699950
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH--HCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 24540013567876431013456256644565316764200110001110000--0012103220001356777778888
Q 537021.9.peg.4 163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC--NDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~--~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
T Consensus 140 Y~d~~~~l~~~i~~~l~~~g~~i~~~a~~~L~~~~g~d~~~~~~EleKL~ly~~~~~~It~edv~~~v~~~~~~~~~~l~ 219 (343)
T PRK06585 140 YADDERDLARLIDDELAKAGLRITPDARAYLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAA 219 (343)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 06998899999999999829997799999999873427999999999999984899978999999986864102499999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-------CC--CCCCHHHHHHHHHHHHHCCH
Q ss_conf 7630136334678876543047621357877753489999997457412-------23--44998899999999862998
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA-------DT--LLYSEAENARALQYSKEVSI 311 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~-------~~--~~~~~~e~~~i~~~a~~i~~ 311 (369)
T Consensus 220 da~l~G~~~~a~~~l~~l~~~g~~pi~il~~l~~~~~~L~~i~~~~~~g~~~~~ai~~~rPpiF~k~k~~~~~ql~~w~~ 299 (343)
T PRK06585 220 DAALAGDLAGFERALDRARAEGTAPVLILRAALRHFQQLHIVRLKVENGKSAAQAIASLRPPVFFKRKPDFEKALRRWSL 299 (343)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCH
T ss_conf 99980899999999999884578779999999999999999999987034599999864899984669999999980999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999998302788-899999999999533049
Q 537021.9.peg.4 312 TFLSRFWQMILKGISEIEGFSR-PMEAVEMVLIRLAHAVQL 351 (369)
Q Consensus 312 ~~L~~~lq~l~~a~~~Lk~n~n-p~L~lE~lLlkL~~~~~~ 351 (369)
T Consensus 300 ~~L~~al~~l~~~E~~~K~~~~~~~~i~~~~ll~ia~~a~~ 340 (343)
T PRK06585 300 ERLLRALERLQQAELDCRRNPALAEAIAQRALLSIAVEARR 340 (343)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998669965999999999999999875