HHsearch alignment for GI: peg_472 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=465.32 Aligned_cols=326 Identities=21% Similarity=0.275 Sum_probs=270.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCHHHHHHHCCCC
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789------9977999977987
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEG------FGEHCQAIIRGNH 74 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~------~c~~c~~i~~~~~ 74 (369)
T Consensus 19 liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~h 98 (363)
T PRK07471 19 LFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGAH 98 (363)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCC
T ss_conf 16819999999999985997645876799981889999999999857999777776787053125877728999952699
Q ss_pred CCCCCCCCC---------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 782224533---------22334555665554456542046523775115664800167899999721221114665067
Q 537021.9.peg.4 75 VDVVELDAA---------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE 145 (369)
Q Consensus 75 ~d~~e~~~~---------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~ 145 (369)
T Consensus 99 pdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~fiLit~~ 178 (363)
T PRK07471 99 GGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLLLLVSHA 178 (363)
T ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 98466762001133321244539999999999724852489669998687873889999999972158988389986399
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHH
Q ss_conf 54330356754333210245400135678764310134562566445653167642001100011100000012103220
Q 537021.9.peg.4 146 IRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVR 225 (369)
Q Consensus 146 ~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~ 225 (369)
T Consensus 179 ~~~llpTI~SRCq~~~~~~l~~~~~~~~L~~---~~~~~~~~~~~~~la~~a~Gs~~~Al~l~~~-----~~-~~l---- 245 (363)
T PRK07471 179 PARLLPTIRSRCRKLRLRPLAPEDVIAALAE---AGGPALDDAELAALAALAEGSVGRALRLAGG-----DG-LAL---- 245 (363)
T ss_pred HHHCHHHHHHHCCCCCCCCCCHHHHHHHHHH---HCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC-----CH-HHH----
T ss_conf 7777799997352425899599999999998---4389999899999999758999999987479-----85-999----
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 001356777778888763013633467887654304762-1357877753489999997457412234499889999999
Q 537021.9.peg.4 226 LMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVN-PSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQ 304 (369)
Q Consensus 226 ~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d-~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~ 304 (369)
T Consensus 246 -------~~~~~~ll~~~~~~d~~~~~~lad~~a~~~~~~~~~~l~l~~~~l~~~~r~~~~~~--~~~~~~~~E~~~~~r 316 (363)
T PRK07471 246 -------YQRTTALLDTLPRLDRRALHALADAAAGGDRAAFALFLDLLDRWLARLARAGARNA--GLPEAVPGEAALLAR 316 (363)
T ss_pred -------HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHH
T ss_conf -------99999999747678999999999998168779999999999999999998752278--810017317999986
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Q ss_conf 98629989999999999999998302-788899999999999533
Q 537021.9.peg.4 305 YSKEVSITFLSRFWQMILKGISEIEG-FSRPMEAVEMVLIRLAHA 348 (369)
Q Consensus 305 ~a~~i~~~~L~~~lq~l~~a~~~Lk~-n~np~L~lE~lLlkL~~~ 348 (369)
T Consensus 317 l~~~~~~~~~~~~~~~l~~~~~~~~~~NLD~k~~~ld~~~~l~~~ 361 (363)
T PRK07471 317 LAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 361 (363)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 088630899999999999999999861898899999999999997