HHsearch alignment for GI: peg_472 and conserved domain: PRK07940

>PRK07940 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=555.27  Aligned_cols=334  Identities=22%  Similarity=0.357  Sum_probs=266.7

Q ss_pred             CCCHHHHHHHHHHHHHCCC------------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             9284899999999998287------------6706201078798888999999999614687778866587899977999
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGR------------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA   68 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~------------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~   68 (369)
T Consensus         7 ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~-----~~cg~C~~C~~   81 (395)
T PRK07940          7 LVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGV-----PGCGECRACRT   81 (395)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-----CCCCCCHHHHH
T ss_conf             1592999999999998363434433334687660376368998788999999999966999999-----99987878999


Q ss_pred             HHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             9779877822245332-233455566555445654204652377511566480016789999972122111466506754
Q 537021.9.peg.4   69 IIRGNHVDVVELDAAS-HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus        69 i~~~~~~d~~e~~~~s-~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~  147 (369)
T Consensus        82 i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~~~~fiL~t~~~~  161 (395)
T PRK07940         82 VLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSVE  161 (395)
T ss_pred             HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHH
T ss_conf             87689987189826877688999999999985273037955999807787489999999985217888869998739978


Q ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH-------------
Q ss_conf             3303567543332102454001356787643101345625664456531676420011000111000-------------
Q 537021.9.peg.4  148 KIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR-------------  214 (369)
Q Consensus       148 ~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~-------------  214 (369)
T Consensus       162 ~llpTI~SRcq~~~f~~~~~~~i~~~L~~-----~~gi~~~~A~~aA~~s~G~igrA~~la~d~~~~~~R~~~l~l~~~~  236 (395)
T PRK07940        162 DVLPTIRSRCRHVALRTPSVEAVADVLVR-----RDGVDPETAQWAARASGGHIGRARRLATDEEARARRARALRLPLRL  236 (395)
T ss_pred             HHHHHHHHHHEECCCCCCCHHHHHHHHHH-----CCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf             74468874400023799999999999987-----0199989999999980898899999806888999999999999970


Q ss_pred             ---------HHCC--CCHHHHHHCCCCCCHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHCC-----CC-HH
Q ss_conf             ---------0001--2103220001356777778888763013-----------6334678876543047-----62-13
Q 537021.9.peg.4  215 ---------CNDK--IVTSSVRLMLALADRNRIMDLFGYLIKG-----------DIINVLQEFSSQYDSG-----VN-PS  266 (369)
Q Consensus       215 ---------~~~~--i~~e~v~~llg~~~~~~i~~Ll~ai~~~-----------d~~~al~~l~~l~~~g-----~d-~~  266 (369)
T Consensus       237 ~~~~~al~~a~~Ll~~~~~~~~~~~~~~d~~e~e~l~~~lg~~~~~~~~~~~~~~~~~~l~~le~~qK~r~~r~~~D~Ld  316 (395)
T PRK07940        237 ARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGTAKAPRGAAGALKDLEKRQKRRATRASRDALD  316 (395)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37168999999999999999999888776899999999843443330133211778999999999876677777777899


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             57877753489999997457412234499889999999986299899999999999999983027888999999999995
Q 537021.9.peg.4  267 VILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA  346 (369)
Q Consensus       267 ~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~  346 (369)
T Consensus       317 ~~L~~L~~~~RD~L~~~~g~---~~~lin~d~~~~l~~~A~~~s~~~ll~~l~~i~~ar~~L~~Nvnp~L~LE~lll~L~  393 (395)
T PRK07940        317 RALIDLAGLYRDVLLVQLGA---GVGLVHPDMADRLAELAARSTPEGLLRCIDAVLACREALAVNVKPLLAVEAMVAALR  393 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99999999999999986089---735558669999999997499999999999999999998845997999999999986


Q ss_pred             H
Q ss_conf             3
Q 537021.9.peg.4  347 H  347 (369)
Q Consensus       347 ~  347 (369)
T Consensus       394 q  394 (395)
T PRK07940        394 Q  394 (395)
T ss_pred             H
T ss_conf             4