HHsearch alignment for GI: peg_472 and conserved domain: PRK07940
>PRK07940 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=555.27 Aligned_cols=334 Identities=22% Similarity=0.357 Sum_probs=266.7
Q ss_pred CCCHHHHHHHHHHHHHCCC------------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9284899999999998287------------6706201078798888999999999614687778866587899977999
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR------------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQA 68 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~------------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~ 68 (369)
T Consensus 7 ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~-----~~cg~C~~C~~ 81 (395)
T PRK07940 7 LVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQCTDPGV-----PGCGECRACRT 81 (395)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-----CCCCCCHHHHH
T ss_conf 1592999999999998363434433334687660376368998788999999999966999999-----99987878999
Q ss_pred HHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 9779877822245332-233455566555445654204652377511566480016789999972122111466506754
Q 537021.9.peg.4 69 IIRGNHVDVVELDAAS-HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIR 147 (369)
Q Consensus 69 i~~~~~~d~~e~~~~s-~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~ 147 (369)
T Consensus 82 i~~g~hpDv~~i~p~~~~i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m~~~a~NalLKtLEEPp~~~~fiL~t~~~~ 161 (395)
T PRK07940 82 VLAGTHPDVRVVVPEGLSIGVDEVREIVQIAARRPTTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSVE 161 (395)
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHH
T ss_conf 87689987189826877688999999999985273037955999807787489999999985217888869998739978
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH-------------
Q ss_conf 3303567543332102454001356787643101345625664456531676420011000111000-------------
Q 537021.9.peg.4 148 KIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR------------- 214 (369)
Q Consensus 148 ~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~------------- 214 (369)
T Consensus 162 ~llpTI~SRcq~~~f~~~~~~~i~~~L~~-----~~gi~~~~A~~aA~~s~G~igrA~~la~d~~~~~~R~~~l~l~~~~ 236 (395)
T PRK07940 162 DVLPTIRSRCRHVALRTPSVEAVADVLVR-----RDGVDPETAQWAARASGGHIGRARRLATDEEARARRARALRLPLRL 236 (395)
T ss_pred HHHHHHHHHHEECCCCCCCHHHHHHHHHH-----CCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 74468874400023799999999999987-----0199989999999980898899999806888999999999999970
Q ss_pred ---------HHCC--CCHHHHHHCCCCCCHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHCC-----CC-HH
Q ss_conf ---------0001--2103220001356777778888763013-----------6334678876543047-----62-13
Q 537021.9.peg.4 215 ---------CNDK--IVTSSVRLMLALADRNRIMDLFGYLIKG-----------DIINVLQEFSSQYDSG-----VN-PS 266 (369)
Q Consensus 215 ---------~~~~--i~~e~v~~llg~~~~~~i~~Ll~ai~~~-----------d~~~al~~l~~l~~~g-----~d-~~ 266 (369)
T Consensus 237 ~~~~~al~~a~~Ll~~~~~~~~~~~~~~d~~e~e~l~~~lg~~~~~~~~~~~~~~~~~~l~~le~~qK~r~~r~~~D~Ld 316 (395)
T PRK07940 237 ARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGTAKAPRGAAGALKDLEKRQKRRATRASRDALD 316 (395)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37168999999999999999999888776899999999843443330133211778999999999876677777777899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 57877753489999997457412234499889999999986299899999999999999983027888999999999995
Q 537021.9.peg.4 267 VILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLA 346 (369)
Q Consensus 267 ~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~ 346 (369)
T Consensus 317 ~~L~~L~~~~RD~L~~~~g~---~~~lin~d~~~~l~~~A~~~s~~~ll~~l~~i~~ar~~L~~Nvnp~L~LE~lll~L~ 393 (395)
T PRK07940 317 RALIDLAGLYRDVLLVQLGA---GVGLVHPDMADRLAELAARSTPEGLLRCIDAVLACREALAVNVKPLLAVEAMVAALR 393 (395)
T ss_pred HHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999986089---735558669999999997499999999999999999998845997999999999986
Q ss_pred H
Q ss_conf 3
Q 537021.9.peg.4 347 H 347 (369)
Q Consensus 347 ~ 347 (369)
T Consensus 394 q 394 (395)
T PRK07940 394 Q 394 (395)
T ss_pred H
T ss_conf 4