HHsearch alignment for GI: peg_472 and conserved domain: PRK08487
>PRK08487 DNA polymerase III subunit delta; Validated.
Probab=99.80 E-value=1.1e-16 Score=143.17 Aligned_cols=306 Identities=12% Similarity=0.115 Sum_probs=232.2
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 99999998287670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI 88 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i 88 (369)
T Consensus 4 ~e~d~~ik~~~~~~~ylLyG~d~fli~~y~~~I~~~~~~~~~~~---------------~~----yfd--E------~d~ 56 (328)
T PRK08487 4 KELDTLLKQNKLPNAFFLYGEDEFQIEYYAKEISSKFKPEELLK---------------EL----YFD--E------YNF 56 (328)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHH---------------HC----CCC--C------CCH
T ss_conf 89999986598884599956857589999999999857752112---------------00----226--5------788
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH--HH----HHHC
Q ss_conf 55566555445654204652377511566480016789999972122111466506754330356754--33----3210
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR--CQ----RFDL 162 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR--cq----~~~f 162 (369)
T Consensus 57 ~~---i~~~l~~~sLFg~~klv~IK~~~ki~~k~l~~Li~~~~~~~~n~~Ii~~~~~~~k~~-~~~k~~~~~~~~~~V~f 132 (328)
T PRK08487 57 SQ---AKDFLSQGSLFGGKNLLVIKTDKKIPKKELKLLIELCEKNSDNFFIIELYEASMKSS-DTEKIFTPKFIAKFVRF 132 (328)
T ss_pred HH---HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHHCCEEEEEE
T ss_conf 99---999973515347774799957774552269999998628977789999706133456-78887766336237751
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 24540013567876431013456256644565316764200110001110000001210322000135677777888876
Q 537021.9.peg.4 163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY 242 (369)
Q Consensus 163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~a 242 (369)
T Consensus 133 f~p~~~el~~~i~~~ak~~g~~Is~~al~~L~e~~g~dL~~~~nELeKL~l~-~~~It~edI~~l~~~~~~~~~~el~~~ 211 (328)
T PRK08487 133 FKPNAWEALKLLQERAKELGLDIDQNALNHLFEIQNENLYLAANELEKLAIL-DAPITLKDIDRLVFGLGSVSFEDLFLK 211 (328)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 3998689999999999991997799999999998596399999899999853-787889999998557666779999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----CCC--CCCCC--CCCHHHHHHHHHHHHHCCHHHH
Q ss_conf 301363346788765430476213578777534899999974----574--12234--4998899999999862998999
Q 537021.9.peg.4 243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKY----IPE--MADTL--LYSEAENARALQYSKEVSITFL 314 (369)
Q Consensus 243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~----~~~--~~~~~--~~~~~e~~~i~~~a~~i~~~~L 314 (369)
T Consensus 212 l~~kk--~~~~~l~~lle~g~n~i~li~~l~~~f~~Lf~~~~~ik~~G~~d~~~ilGy~pP~~i~~~~~~~a~~~~~~~~ 289 (328)
T PRK08487 212 LLKKK--DIKDDLFKLLEEGFNEIALLNSLYRFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQALRLKEAQY 289 (328)
T ss_pred HHCCC--CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
T ss_conf 97537--2899999999758778999999999999999999999980996889984899988999999999873389999
Q ss_pred HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q ss_conf 999999999999830278--8899999999999533
Q 537021.9.peg.4 315 SRFWQMILKGISEIEGFS--RPMEAVEMVLIRLAHA 348 (369)
Q Consensus 315 ~~~lq~l~~a~~~Lk~n~--np~L~lE~lLlkL~~~ 348 (369)
T Consensus 290 ~~if~~L~~~e~~~kt~~~~~k~~~l~~~l~~iq~~ 325 (328)
T PRK08487 290 KEIFELLLEWELELKTNSKIDKKEFLFSTLLKIQRI 325 (328)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999986255556468999999999975