HHsearch alignment for GI: peg_472 and conserved domain: PRK08487

>PRK08487 DNA polymerase III subunit delta; Validated.
Probab=99.80  E-value=1.1e-16  Score=143.17  Aligned_cols=306  Identities=12%  Similarity=0.115  Sum_probs=232.2

Q ss_pred             HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             99999998287670620107879888899999999961468777886658789997799997798778222453322334
Q 537021.9.peg.4    9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSI   88 (369)
Q Consensus         9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~i   88 (369)
T Consensus         4 ~e~d~~ik~~~~~~~ylLyG~d~fli~~y~~~I~~~~~~~~~~~---------------~~----yfd--E------~d~   56 (328)
T PRK08487          4 KELDTLLKQNKLPNAFFLYGEDEFQIEYYAKEISSKFKPEELLK---------------EL----YFD--E------YNF   56 (328)
T ss_pred             HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHH---------------HC----CCC--C------CCH
T ss_conf             89999986598884599956857589999999999857752112---------------00----226--5------788


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH--HH----HHHC
Q ss_conf             55566555445654204652377511566480016789999972122111466506754330356754--33----3210
Q 537021.9.peg.4   89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR--CQ----RFDL  162 (369)
Q Consensus        89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR--cq----~~~f  162 (369)
T Consensus        57 ~~---i~~~l~~~sLFg~~klv~IK~~~ki~~k~l~~Li~~~~~~~~n~~Ii~~~~~~~k~~-~~~k~~~~~~~~~~V~f  132 (328)
T PRK08487         57 SQ---AKDFLSQGSLFGGKNLLVIKTDKKIPKKELKLLIELCEKNSDNFFIIELYEASMKSS-DTEKIFTPKFIAKFVRF  132 (328)
T ss_pred             HH---HHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHHCCEEEEEE
T ss_conf             99---999973515347774799957774552269999998628977789999706133456-78887766336237751


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             24540013567876431013456256644565316764200110001110000001210322000135677777888876
Q 537021.9.peg.4  163 HRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGY  242 (369)
Q Consensus       163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~a  242 (369)
T Consensus       133 f~p~~~el~~~i~~~ak~~g~~Is~~al~~L~e~~g~dL~~~~nELeKL~l~-~~~It~edI~~l~~~~~~~~~~el~~~  211 (328)
T PRK08487        133 FKPNAWEALKLLQERAKELGLDIDQNALNHLFEIQNENLYLAANELEKLAIL-DAPITLKDIDRLVFGLGSVSFEDLFLK  211 (328)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             3998689999999999991997799999999998596399999899999853-787889999998557666779999999


Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----CCC--CCCCC--CCCHHHHHHHHHHHHHCCHHHH
Q ss_conf             301363346788765430476213578777534899999974----574--12234--4998899999999862998999
Q 537021.9.peg.4  243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKY----IPE--MADTL--LYSEAENARALQYSKEVSITFL  314 (369)
Q Consensus       243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~----~~~--~~~~~--~~~~~e~~~i~~~a~~i~~~~L  314 (369)
T Consensus       212 l~~kk--~~~~~l~~lle~g~n~i~li~~l~~~f~~Lf~~~~~ik~~G~~d~~~ilGy~pP~~i~~~~~~~a~~~~~~~~  289 (328)
T PRK08487        212 LLKKK--DIKDDLFKLLEEGFNEIALLNSLYRFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQALRLKEAQY  289 (328)
T ss_pred             HHCCC--CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCHHHH
T ss_conf             97537--2899999999758778999999999999999999999980996889984899988999999999873389999


Q ss_pred             HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q ss_conf             999999999999830278--8899999999999533
Q 537021.9.peg.4  315 SRFWQMILKGISEIEGFS--RPMEAVEMVLIRLAHA  348 (369)
Q Consensus       315 ~~~lq~l~~a~~~Lk~n~--np~L~lE~lLlkL~~~  348 (369)
T Consensus       290 ~~if~~L~~~e~~~kt~~~~~k~~~l~~~l~~iq~~  325 (328)
T PRK08487        290 KEIFELLLEWELELKTNSKIDKKEFLFSTLLKIQRI  325 (328)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             999999999999986255556468999999999975