HHsearch alignment for GI: peg_472 and conserved domain: PRK08769
>PRK08769 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=420.31 Aligned_cols=298 Identities=19% Similarity=0.261 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
T Consensus 9 q~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~-------~~~~~~~~~~~i~~g~HPD~~~i~~~ 81 (319)
T PRK08769 9 QQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP-------DPALAQRTRQLIAAGTHPDLQLVSFI 81 (319)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-------CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 68999999999976994206875899987899999999999837997-------97654338899966899896877534
Q ss_pred ---------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf ---------22334555665554456542046523775115664800167899999721221114665067543303567
Q 537021.9.peg.4 84 ---------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL 154 (369)
Q Consensus 84 ---------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~ 154 (369)
T Consensus 82 ~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp~~~~~iL~~~~~~~ll~TI~ 161 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHH
T ss_conf 44454311234869999999999613720279569998066752899999999982279988489998699365824776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHH
Q ss_conf 54333210245400135678764310134562566445653167642001100011100000012103220001356777
Q 537021.9.peg.4 155 SRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRN 234 (369)
Q Consensus 155 SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~ 234 (369)
T Consensus 162 SRCq~~~~~~p~~~~~~~~L~~----~g--~~~~~a~~~l~~a~g~p~~A~~~~~------~~~~~-----------~~~ 218 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLS----QG--VSERAAQEALDAARGHPGLAAQWLR------EDGLA-----------VRR 218 (319)
T ss_pred HCCEEECCCCCCHHHHHHHHHH----CC--CCHHHHHHHHHHHCCCHHHHHHHHC------CCCHH-----------HHH
T ss_conf 4850111899699999999997----59--9918999999982799689999843------67277-----------899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
Q ss_conf 77888876301363346788765430476213578777534899999974574122344998899999999862998999
Q 537021.9.peg.4 235 RIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFL 314 (369)
Q Consensus 235 ~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L 314 (369)
T Consensus 219 ~~~~~l~~i~~~~-~~~l~~aq~w~~d~~~~-----~~l~~~~~l~~~~~-----------------~~~~~~~~~l~~L 275 (319)
T PRK08769 219 AVAQDLEQIASGR-AGAVDVAQRWTNDGQAD-----QRLRHAADLALAQA-----------------SAGLTDPSRLHKL 275 (319)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-----------------HHCCCCHHHHHHH
T ss_conf 9999999885074-25999999987602457-----88886440444211-----------------1116882889999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999999999998302788899999999999533049998
Q 537021.9.peg.4 315 SRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSP 354 (369)
Q Consensus 315 ~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~ 354 (369)
T Consensus 276 ~~~l~~~~~~r~l~~~nvn~~L~le~Lli~~re~~~~~~~ 315 (319)
T PRK08769 276 ATWFDAANRTRDLLRTTVRADLAVTELLLAWREGERQPRS 315 (319)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999998538872889999999999974427777