HHsearch alignment for GI: peg_472 and conserved domain: PRK09112

>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=454.13  Aligned_cols=311  Identities=22%  Similarity=0.303  Sum_probs=238.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCHHHHHHHCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866--5878999779999779877822
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT--VEFEGFGEHCQAIIRGNHVDVV   78 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~--~~~c~~c~~c~~i~~~~~~d~~   78 (369)
T Consensus        25 liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~  104 (352)
T PRK09112         25 LFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLL  104 (352)
T ss_pred             HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE
T ss_conf             27869999999999984996524653589980899999999999866998666865567888787789999748999956


Q ss_pred             CCC---------CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf             245---------33223345556655544565420465237751156648001678999997212211146650675433
Q 537021.9.peg.4   79 ELD---------AASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKI  149 (369)
Q Consensus        79 e~~---------~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~l  149 (369)
T Consensus       105 ~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~~~~l  184 (352)
T PRK09112        105 HLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRL  184 (352)
T ss_pred             EEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHC
T ss_conf             55343220214543357779999999984548866880699981878746999999999853489874899886997777


Q ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf             03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4  150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA  229 (369)
Q Consensus       150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg  229 (369)
T Consensus       185 l~TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l~~~a~GS~~~Al~L~~~----~gl~i-~~~~~~ll-  257 (352)
T PRK09112        185 LPTIRSRCQPISLKPLDDDELKKALSHLGSKQGIS-AGEETEALLQRSEGSVRKALLLLNY----GGLEI-IDTVDQLL-  257 (352)
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCHHHHHHHHCC----CHHHH-HHHHHHHH-
T ss_conf             68999743321488939899999999875126899-8799999998708998899987448----77999-99999998-


Q ss_pred             CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             56777778888763013633467887654304762--1357877753489999997457412234499889999999986
Q 537021.9.peg.4  230 LADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVN--PSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSK  307 (369)
Q Consensus       230 ~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d--~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~  307 (369)
T Consensus       258 -----------~~-p~~d~~~~~~la~~~~~~~~~~~~~~~~~~l~~~l~~~ar~~a~--~~~-----~-----------  307 (352)
T PRK09112        258 -----------AG-SGFDLPKAHALAGALSGRESEVQFDLFRDHLLDRIANEARRAAE--SGQ-----L-----------  307 (352)
T ss_pred             -----------HC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCC-----H-----------
T ss_conf             -----------08-99998999999999847774789999999999999999998501--588-----3-----------


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHC
Q ss_conf             2998999999999999999830-27888999999999995330
Q 537021.9.peg.4  308 EVSITFLSRFWQMILKGISEIE-GFSRPMEAVEMVLIRLAHAV  349 (369)
Q Consensus       308 ~i~~~~L~~~lq~l~~a~~~Lk-~n~np~L~lE~lLlkL~~~~  349 (369)
T Consensus       308 -~~a~~~a~~~~~~~~~~~~~~a~NLD~~~~il~~~~~i~~a~  349 (352)
T PRK09112        308 -ALAERWARFWSELHEEIVEAETYNLDRKQTVISLLERIHRAF  349 (352)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             -789999999999999999889877787999999999999986