HHsearch alignment for GI: peg_472 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=454.13 Aligned_cols=311 Identities=22% Similarity=0.303 Sum_probs=238.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866--5878999779999779877822
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT--VEFEGFGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~--~~~c~~c~~c~~i~~~~~~d~~ 78 (369)
T Consensus 25 liGq~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~ 104 (352)
T PRK09112 25 LFGHEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLL 104 (352)
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE
T ss_conf 27869999999999984996524653589980899999999999866998666865567888787789999748999956
Q ss_pred CCC---------CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 245---------33223345556655544565420465237751156648001678999997212211146650675433
Q 537021.9.peg.4 79 ELD---------AASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKI 149 (369)
Q Consensus 79 e~~---------~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~l 149 (369)
T Consensus 105 ~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~~~~l 184 (352)
T PRK09112 105 HLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRL 184 (352)
T ss_pred EEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHC
T ss_conf 55343220214543357779999999984548866880699981878746999999999853489874899886997777
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCC
Q ss_conf 03567543332102454001356787643101345625664456531676420011000111000000121032200013
Q 537021.9.peg.4 150 PITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLA 229 (369)
Q Consensus 150 l~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg 229 (369)
T Consensus 185 l~TI~SRCq~~~f~pL~~~di~~~L~~i~~~~~~~-~~~~~~~l~~~a~GS~~~Al~L~~~----~gl~i-~~~~~~ll- 257 (352)
T PRK09112 185 LPTIRSRCQPISLKPLDDDELKKALSHLGSKQGIS-AGEETEALLQRSEGSVRKALLLLNY----GGLEI-IDTVDQLL- 257 (352)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHCCCHHHHHHHHCC----CHHHH-HHHHHHHH-
T ss_conf 68999743321488939899999999875126899-8799999998708998899987448----77999-99999998-
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 56777778888763013633467887654304762--1357877753489999997457412234499889999999986
Q 537021.9.peg.4 230 LADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVN--PSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSK 307 (369)
Q Consensus 230 ~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d--~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~ 307 (369)
T Consensus 258 -----------~~-p~~d~~~~~~la~~~~~~~~~~~~~~~~~~l~~~l~~~ar~~a~--~~~-----~----------- 307 (352)
T PRK09112 258 -----------AG-SGFDLPKAHALAGALSGRESEVQFDLFRDHLLDRIANEARRAAE--SGQ-----L----------- 307 (352)
T ss_pred -----------HC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--CCC-----H-----------
T ss_conf -----------08-99998999999999847774789999999999999999998501--588-----3-----------
Q ss_pred HCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHC
Q ss_conf 2998999999999999999830-27888999999999995330
Q 537021.9.peg.4 308 EVSITFLSRFWQMILKGISEIE-GFSRPMEAVEMVLIRLAHAV 349 (369)
Q Consensus 308 ~i~~~~L~~~lq~l~~a~~~Lk-~n~np~L~lE~lLlkL~~~~ 349 (369)
T Consensus 308 -~~a~~~a~~~~~~~~~~~~~~a~NLD~~~~il~~~~~i~~a~ 349 (352)
T PRK09112 308 -ALAERWARFWSELHEEIVEAETYNLDRKQTVISLLERIHRAF 349 (352)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf -789999999999999999889877787999999999999986