HHsearch alignment for GI: peg_472 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.20 E-value=1.1e-10 Score=98.91 Aligned_cols=182 Identities=19% Similarity=0.308 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC----
Q ss_conf 9284899999999998287670620107879888899999999961468777886658789997799997798778----
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD---- 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d---- 76 (369)
T Consensus 188 viGR~~Ei~r~i~iL~Rr~KNN-piLvGepGVGKTAIvEGLA~rI~------------------------~g~VP~~L~~ 242 (758)
T PRK11034 188 LIGREKELERAIQVLCRRRKNN-PLLVGESGVGKTAIAEGLAWRIV------------------------QGDVPEVMAD 242 (758)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHH------------------------CCCCCHHHCC
T ss_conf 7384899999999997632589-60216999869999999999997------------------------3899765589
Q ss_pred --CCCCC------CCCCCC-HH-HHHHHHHHHHHHHHCCCCCEEEEECHHHC---------CCCHHHHHHHHHHHCCCCC
Q ss_conf --22245------332233-45-55665554456542046523775115664---------8001678999997212211
Q 537021.9.peg.4 77 --VVELD------AASHTS-ID-DVREIIDQIYYKPISARFRVYIMDEVQML---------STAAFNGLLKTLEEPPPHV 137 (369)
Q Consensus 77 --~~e~~------~~s~~~-id-~ir~l~~~~~~~p~~~~~kv~iid~a~~m---------~~~a~NaLLK~lEEPp~~~ 137 (369)
T Consensus 243 ~~i~~Ldl~~LiAGtkyRGefEeRlk~vi~e~~~~----~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~Lar--G~l 316 (758)
T PRK11034 243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD----TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKI 316 (758)
T ss_pred CEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHC----CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC--CCC
T ss_conf 88998458778616864154999999999999857----985999804344226887677764678874578746--972
Q ss_pred CEEEEECC--CCCCC---HHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHCCCCC------CC
Q ss_conf 14665067--54330---35675433321024540013567876431----013456256644565316764------20
Q 537021.9.peg.4 138 KFIFATTE--IRKIP---ITVLSRCQRFDLHRISIGDLIELFTKILQ----EESIEFDPEAVAMIARASDGS------AR 202 (369)
Q Consensus 138 ~fil~t~~--~~~ll---~TI~SRcq~~~f~~l~~~~i~~~L~~i~~----~E~i~~d~~~l~~ia~~s~Gs------lR 202 (369)
T Consensus 317 ~~IgaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~v~~~d~al~~av~Ls~rYi~dr~lPD 396 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred EEEEECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCCCCCCH
T ss_conf 39994377998750321478884282653189998999999998999873236957743899999999976502688961
Q ss_pred HHHHCCCCCCC
Q ss_conf 01100011100
Q 537021.9.peg.4 203 DGLSLLDQAIA 213 (369)
Q Consensus 203 ~Al~lLeq~i~ 213 (369)
T Consensus 397 KAIdllDea~a 407 (758)
T PRK11034 397 KAIDVIDEAGA 407 (758)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999988