HHsearch alignment for GI: peg_472 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=97.17 E-value=0.0029 Score=44.23 Aligned_cols=131 Identities=20% Similarity=0.318 Sum_probs=59.1
Q ss_pred HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH--HHH----HHHC--CCCC-CCC-
Q ss_conf 99999998287670620107879888899999999961468777886658789997--799----9977--9877-822-
Q 537021.9.peg.4 9 KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE--HCQ----AIIR--GNHV-DVV- 78 (369)
Q Consensus 9 ~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~--~c~----~i~~--~~~~-d~~- 78 (369)
T Consensus 80 ~~i~~~i~~nq---Vvii~GeTGsGKTTQi---Pq~~l-e~g~-g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VG 151 (1295)
T PRK11131 80 QDILEAIRDHQ---VVIVAGETGSGKTTQL---PKICL-ELGR-GIKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1295)
T ss_pred HHHHHHHHHCC---EEEEECCCCCCHHHHH---HHHHH-HCCC-CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999999799---6999768999878899---99999-6279-999989977965999999999999981999899888
Q ss_pred -CC---CCCC-CCCH----HHHHHHHHHHHHHHHCCCCCEEEEECHH--HCCCCHHHHHHHHHHHCCCCCCEEEE--ECC
Q ss_conf -24---5332-2334----5556655544565420465237751156--64800167899999721221114665--067
Q 537021.9.peg.4 79 -EL---DAAS-HTSI----DDVREIIDQIYYKPISARFRVYIMDEVQ--MLSTAAFNGLLKTLEEPPPHVKFIFA--TTE 145 (369)
Q Consensus 79 -e~---~~~s-~~~i----d~ir~l~~~~~~~p~~~~~kv~iid~a~--~m~~~a~NaLLK~lEEPp~~~~fil~--t~~ 145 (369)
T Consensus 152 Y~VRf~~~~s~~t~i~~~TdGi--LL~e~~~d~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~dLKvIimSATid 229 (1295)
T PRK11131 152 YKVRFNDQVSDNTMVKLMTDGI--LLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATID 229 (1295)
T ss_pred EEECCCCCCCCCCEEEEECCHH--HHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8945698879997799976569--99986209987887779986855688019999999999983399988999558689
Q ss_pred CCCC
Q ss_conf 5433
Q 537021.9.peg.4 146 IRKI 149 (369)
Q Consensus 146 ~~~l 149 (369)
T Consensus 230 ~e~f 233 (1295)
T PRK11131 230 PERF 233 (1295)
T ss_pred HHHH
T ss_conf 7999