HHsearch alignment for GI: peg_472 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=97.68 E-value=0.00091 Score=47.93 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=56.5
Q ss_pred HHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99828767062010787988889999999996146877788665878999779999779877822245332233455566
Q 537021.9.peg.4 14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE 93 (369)
Q Consensus 14 ~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~ 93 (369)
T Consensus 187 ~~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~-~rv~~VqfhpsysYEDfi~Gyrp~~~gf--~~~~G--~f~~ 261 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAP-QRVNMVQFHQSYSYEDFIQGYRPNGVGF--RRKDG--IFYN 261 (459)
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCHHHHHCCCCCCCCCC--EECCC--HHHH
T ss_conf 99985458827965899988789999999997078877-8468998358866178764605688861--32683--6999
Q ss_pred HHHHHHHHHHCCCCCEEEEECHHHCCCCH-HHHHHHHHHH
Q ss_conf 55544565420465237751156648001-6789999972
Q 537021.9.peg.4 94 IIDQIYYKPISARFRVYIMDEVQMLSTAA-FNGLLKTLEE 132 (369)
Q Consensus 94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a-~NaLLK~lEE 132 (369)
T Consensus 262 ~~~~A~~~p~--~~y~~iideinr~~~~~~fgel~~liE~ 299 (459)
T PRK11331 262 FCQQAKEQPE--KKYVFIIDEINRANLSKVFGEVMMLMEH 299 (459)
T ss_pred HHHHHHHCCC--CCEEEEEEHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999984989--8769998432033889999999999641