HHsearch alignment for GI: peg_472 and conserved domain: PRK11331

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=97.68  E-value=0.00091  Score=47.93  Aligned_cols=112  Identities=21%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             HHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             99828767062010787988889999999996146877788665878999779999779877822245332233455566
Q 537021.9.peg.4   14 AFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVRE   93 (369)
Q Consensus        14 ~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~   93 (369)
T Consensus       187 ~~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~-~rv~~VqfhpsysYEDfi~Gyrp~~~gf--~~~~G--~f~~  261 (459)
T PRK11331        187 ILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAP-QRVNMVQFHQSYSYEDFIQGYRPNGVGF--RRKDG--IFYN  261 (459)
T ss_pred             HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC-CCEEEEEECCCCCHHHHHCCCCCCCCCC--EECCC--HHHH
T ss_conf             99985458827965899988789999999997078877-8468998358866178764605688861--32683--6999


Q ss_pred             HHHHHHHHHHCCCCCEEEEECHHHCCCCH-HHHHHHHHHH
Q ss_conf             55544565420465237751156648001-6789999972
Q 537021.9.peg.4   94 IIDQIYYKPISARFRVYIMDEVQMLSTAA-FNGLLKTLEE  132 (369)
Q Consensus        94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a-~NaLLK~lEE  132 (369)
T Consensus       262 ~~~~A~~~p~--~~y~~iideinr~~~~~~fgel~~liE~  299 (459)
T PRK11331        262 FCQQAKEQPE--KKYVFIIDEINRANLSKVFGEVMMLMEH  299 (459)
T ss_pred             HHHHHHHCCC--CCEEEEEEHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999984989--8769998432033889999999999641