HHsearch alignment for GI: peg_472 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=98.27 E-value=1.3e-05 Score=61.56 Aligned_cols=203 Identities=17% Similarity=0.236 Sum_probs=103.6
Q ss_pred CCCHHHHHHHH-HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC---CCCC
Q ss_conf 92848999999-9999828767062010787988889999999996146877788665-87899977999977---9877
Q 537021.9.peg.4 1 MIGQKPMIKTL-TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR---GNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l-~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~---~~~~ 75 (369)
T Consensus 327 l~g~s~~~~~~~~~a~~~a~~~~pVLI~GE~GtGKe~lAraIH~~----S~r~~~pfv~vnC~ai~~-~~~e~elfG~~- 400 (639)
T PRK11388 327 MPQDSPQMRRLIHFGRQAAKSSFPILLCGEEGVGKALLAQAIHNE----SERAAGPYIAVNCQLLPD-EALAEEFLGSD- 400 (639)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC----CCCCCCCEEEEECCCCCH-HHHHHHHCCCC-
T ss_conf 467999999999999999688996898898981099999999955----777899818987898984-67899873877-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf 8222453322334555665554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4 76 DVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT 144 (369)
Q Consensus 76 d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~ 144 (369)
T Consensus 401 -----~~~~~~g------~~g~~----e~A~gGTL~LdeI~~lp~~~Q~~LlrvL~~~~~~r~g~~~~~~vdvRiiaat~ 465 (639)
T PRK11388 401 -----RTDSENG------RLSKF----ELAHGGTLFLEKVEYLSVELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTT 465 (639)
T ss_pred -----CCCCCCC------CCCHH----HCCCCCEEEECCHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECC
T ss_conf -----6764346------68624----40369828846726499999999999986593785699946664279997364
Q ss_pred CC-CCC------CHHHHHHH--HHHHCCCCCC--HHHHHH----HHHHHHHC--CCCCCHHHHHHHH-HCCCCCCCHHHH
Q ss_conf 75-433------03567543--3321024540--013567----87643101--3456256644565-316764200110
Q 537021.9.peg.4 145 EI-RKI------PITVLSRC--QRFDLHRISI--GDLIEL----FTKILQEE--SIEFDPEAVAMIA-RASDGSARDGLS 206 (369)
Q Consensus 145 ~~-~~l------l~TI~SRc--q~~~f~~l~~--~~i~~~----L~~i~~~E--~i~~d~~~l~~ia-~~s~GslR~Al~ 206 (369)
T Consensus 466 ~~l~~~v~~g~fr~dLyyrl~~~~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n 545 (639)
T PRK11388 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRS 545 (639)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 50899987498549999876744105733232534399999999999999719999989999999972899979999999
Q ss_pred CCCCCCCHHHCC-CCHHHH
Q ss_conf 001110000001-210322
Q 537021.9.peg.4 207 LLDQAIARCNDK-IVTSSV 224 (369)
Q Consensus 207 lLeq~i~~~~~~-i~~e~v 224 (369)
T Consensus 546 vl~~a~~~~~~~~I~~~~L 564 (639)
T PRK11388 546 VIENLALSSDNGRIRLSDL 564 (639)
T ss_pred HHHHHHHHCCCCCCCHHHC
T ss_conf 9999998389984267978