HHsearch alignment for GI: peg_472 and conserved domain: PRK11448

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=95.18  E-value=0.1  Score=32.81  Aligned_cols=138  Identities=15%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH----HHHHHHC------CC
Q ss_conf             4899999999998287670620107879888899999999961468777886658789997----7999977------98
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGE----HCQAIIR------GN   73 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~----~c~~i~~------~~   73 (369)
T Consensus       421 Q~~AI~~v~~a~~~~~-rr-aLl~MATGTGKTrtaial~~rLlk~~~~k--RILFLvDR~~L~~QA~~~F~~~~~~~~~~  496 (1126)
T PRK11448        421 QEDAIQAVEKALANGQ-RE-ILLAMATGTGKTRTAIALMYRLLKAKRFK--RILFLVDRRALGEQALDAFKDTKIEGNQT  496 (1126)
T ss_pred             HHHHHHHHHHHHHCCC-CC-EEEEECCCCCHHHHHHHHHHHHHHCCCCC--EEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999998098-54-68872488858989999999999658767--25798565899999999875434545666


Q ss_pred             CCCCCCC--------CCCCCCCHHHHHHHHHHHHH-----HHHCCCCCEEEEECHHH-------CCC---------CHHH
Q ss_conf             7782224--------53322334555665554456-----54204652377511566-------480---------0167
Q 537021.9.peg.4   74 HVDVVEL--------DAASHTSIDDVREIIDQIYY-----KPISARFRVYIMDEVQM-------LST---------AAFN  124 (369)
Q Consensus        74 ~~d~~e~--------~~~s~~~id~ir~l~~~~~~-----~p~~~~~kv~iid~a~~-------m~~---------~a~N  124 (369)
T Consensus       497 ~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~rd~~s~~s  576 (1126)
T PRK11448        497 FASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFRDQLDYVS  576 (1126)
T ss_pred             CCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHH
T ss_conf             40022001025678787771999730789987523576779999851379897787887433231100010232024777


Q ss_pred             HHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             89999972122111466506754
Q 537021.9.peg.4  125 GLLKTLEEPPPHVKFIFATTEIR  147 (369)
Q Consensus       125 aLLK~lEEPp~~~~fil~t~~~~  147 (369)
T Consensus       577 kyr~IldYF-D-A~~iGLTATP~  597 (1126)
T PRK11448        577 KYRRVLDYF-D-AVKIGLTATPA  597 (1126)
T ss_pred             HHHHHHHHH-H-HHHHCCCCCCC
T ss_conf             899998762-1-55404767999