HHsearch alignment for GI: peg_472 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=100.00 E-value=1.7e-32 Score=259.79 Aligned_cols=241 Identities=27% Similarity=0.388 Sum_probs=196.8
Q ss_pred CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
T Consensus 30 ~vGQ~hllg~g~~Lrr~i~~~~~~-S~Il~GPPGtGKTTLA~iIA~~t~~----------------------------~F 80 (726)
T PRK13341 30 FVGQDHILGEGRLLRRAIKADRVG-SLILYGPPGVGKTTLARIIANHTRA----------------------------HF 80 (726)
T ss_pred HCCCHHHCCCCCHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCC----------------------------CE
T ss_conf 359575428982899999769998-2788897999999999999887488----------------------------67
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHH
Q ss_conf 224533223345556655544565-42046523775115664800167899999721221114665067-54-3303567
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYK-PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVL 154 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~-p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~ 154 (369)
T Consensus 81 ~~lsAv-~sgvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~--G~i~LIGATTENP~F~vn~ALl 157 (726)
T PRK13341 81 SSLNAV-LAGVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTVTLIGATTENPYFEVNKALV 157 (726)
T ss_pred EEEECC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCC--CEEEEEEECCCCCCEEECHHHH
T ss_conf 998562-0377999999999999987459965999862542588789987888606--8389997047897436429888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH--C----CCCH
Q ss_conf 543332102454001356787643101-------34562566445653167642001100011100000--0----1210
Q 537021.9.peg.4 155 SRCQRFDLHRISIGDLIELFTKILQEE-------SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN--D----KIVT 221 (369)
Q Consensus 155 SRcq~~~f~~l~~~~i~~~L~~i~~~E-------~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~--~----~i~~ 221 (369)
T Consensus 158 SR~~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~ 237 (726)
T PRK13341 158 SRSRLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINL 237 (726)
T ss_pred HHCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECH
T ss_conf 32346674389999999999999876743256678775989999999975973999999999999707457688344359
Q ss_pred HHHHHCC----------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 3220001----------356777778888763013633467887654304762135787775
Q 537021.9.peg.4 222 SSVRLML----------ALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLA 273 (369)
Q Consensus 222 e~v~~ll----------g~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll 273 (369)
T Consensus 238 ~~~~~~~~~~~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGEDP~fIaRRLi 299 (726)
T PRK13341 238 AIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRML 299 (726)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999985666056877517889999999986548967899999999975998899999999