HHsearch alignment for GI: peg_472 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=100.00  E-value=1.7e-32  Score=259.79  Aligned_cols=241  Identities=27%  Similarity=0.388  Sum_probs=196.8

Q ss_pred             CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
T Consensus        30 ~vGQ~hllg~g~~Lrr~i~~~~~~-S~Il~GPPGtGKTTLA~iIA~~t~~----------------------------~F   80 (726)
T PRK13341         30 FVGQDHILGEGRLLRRAIKADRVG-SLILYGPPGVGKTTLARIIANHTRA----------------------------HF   80 (726)
T ss_pred             HCCCHHHCCCCCHHHHHHHCCCCC-EEEEECCCCCCHHHHHHHHHHHHCC----------------------------CE
T ss_conf             359575428982899999769998-2788897999999999999887488----------------------------67


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHH
Q ss_conf             224533223345556655544565-42046523775115664800167899999721221114665067-54-3303567
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYK-PISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVL  154 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~-p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~  154 (369)
T Consensus        81 ~~lsAv-~sgvkdlr~ii~~A~~~~~~~g~~tILFIDEIHRfNK~QQD~LLp~vE~--G~i~LIGATTENP~F~vn~ALl  157 (726)
T PRK13341         81 SSLNAV-LAGVKDLRAEVDAAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTVTLIGATTENPYFEVNKALV  157 (726)
T ss_pred             EEEECC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHCC--CEEEEEEECCCCCCEEECHHHH
T ss_conf             998562-0377999999999999987459965999862542588789987888606--8389997047897436429888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH--C----CCCH
Q ss_conf             543332102454001356787643101-------34562566445653167642001100011100000--0----1210
Q 537021.9.peg.4  155 SRCQRFDLHRISIGDLIELFTKILQEE-------SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN--D----KIVT  221 (369)
Q Consensus       155 SRcq~~~f~~l~~~~i~~~L~~i~~~E-------~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~--~----~i~~  221 (369)
T Consensus       158 SR~~vf~L~~L~~~dl~~il~rAl~d~~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~  237 (726)
T PRK13341        158 SRSRLFRLKSLEDEDLHQLLKRALQDKERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINL  237 (726)
T ss_pred             HHCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECH
T ss_conf             32346674389999999999999876743256678775989999999975973999999999999707457688344359


Q ss_pred             HHHHHCC----------CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             3220001----------356777778888763013633467887654304762135787775
Q 537021.9.peg.4  222 SSVRLML----------ALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLA  273 (369)
Q Consensus       222 e~v~~ll----------g~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll  273 (369)
T Consensus       238 ~~~~~~~~~~~~~YDk~GD~HYd~iSAfiKSiRGSDpDAALywLARMLeaGEDP~fIaRRLi  299 (726)
T PRK13341        238 AIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRML  299 (726)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999985666056877517889999999986548967899999999975998899999999