HHsearch alignment for GI: peg_472 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=100.00  E-value=6.3e-40  Score=314.70  Aligned_cols=241  Identities=30%  Similarity=0.444  Sum_probs=207.6

Q ss_pred             CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4    1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV   77 (369)
Q Consensus         1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~   77 (369)
T Consensus        15 ~vGQ~hllg~~~~L~~~i~~~~~~s-~Il~GPPG~GKTTlA~iiA~~~~~----------------------------~f   65 (417)
T PRK13342         15 VVGQEHLLGPGKPLRRMIEAGRLSS-MILWGPPGTGKTTLARIIAGATDA----------------------------EF   65 (417)
T ss_pred             HCCCHHHHCCCHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC----------------------------CE
T ss_conf             5798776089719999997699975-998896999899999999998689----------------------------88


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHHH
Q ss_conf             22453322334555665554456542046523775115664800167899999721221114665067-54-33035675
Q 537021.9.peg.4   78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVLS  155 (369)
Q Consensus        78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~S  155 (369)
T Consensus        66 ~~lnA~~-~gv~dir~ii~~a~~~~-~~~~tilfiDEIHRfnK~QQD~LLp~vE~--g~iiLIgATTENP~f~in~aLlS  141 (417)
T PRK13342         66 EALSAVT-SGVKDLREVIEEAKQSR-LGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLS  141 (417)
T ss_pred             EEEECCC-CCHHHHHHHHHHHHHHH-CCCCEEEEEECHHHCCHHHHHHHHHHHHC--CCEEEEEECCCCCHHHCCHHHHH
T ss_conf             9961410-38899999999988631-48965999978200588999999875112--65699974157922534898985


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH--CCCCHHHHHHCC
Q ss_conf             43332102454001356787643101-----34562566445653167642001100011100000--012103220001
Q 537021.9.peg.4  156 RCQRFDLHRISIGDLIELFTKILQEE-----SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN--DKIVTSSVRLML  228 (369)
Q Consensus       156 Rcq~~~f~~l~~~~i~~~L~~i~~~E-----~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~--~~i~~e~v~~ll  228 (369)
T Consensus       142 Rc~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~  221 (417)
T PRK13342        142 RAQVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEAL  221 (417)
T ss_pred             HHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             65700205899999999999999877433788776999999999814985999999999998525899734899999998


Q ss_pred             CCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             356----------7777788887630136334678876543047621357877753
Q 537021.9.peg.4  229 ALA----------DRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAE  274 (369)
Q Consensus       229 g~~----------~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~  274 (369)
T Consensus       222 ~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii  277 (417)
T PRK13342        222 QRRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI  277 (417)
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             44103577786347899999999851699548999999999759997999999999