HHsearch alignment for GI: peg_472 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=100.00 E-value=6.3e-40 Score=314.70 Aligned_cols=241 Identities=30% Similarity=0.444 Sum_probs=207.6
Q ss_pred CCCHHHHH---HHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 92848999---999999982876706201078798888999999999614687778866587899977999977987782
Q 537021.9.peg.4 1 MIGQKPMI---KTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDV 77 (369)
Q Consensus 1 iiGq~~~~---~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~ 77 (369)
T Consensus 15 ~vGQ~hllg~~~~L~~~i~~~~~~s-~Il~GPPG~GKTTlA~iiA~~~~~----------------------------~f 65 (417)
T PRK13342 15 VVGQEHLLGPGKPLRRMIEAGRLSS-MILWGPPGTGKTTLARIIAGATDA----------------------------EF 65 (417)
T ss_pred HCCCHHHHCCCHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCC----------------------------CE
T ss_conf 5798776089719999997699975-998896999899999999998689----------------------------88
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC-CC-CCCHHHHH
Q ss_conf 22453322334555665554456542046523775115664800167899999721221114665067-54-33035675
Q 537021.9.peg.4 78 VELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTE-IR-KIPITVLS 155 (369)
Q Consensus 78 ~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~-~~-~ll~TI~S 155 (369)
T Consensus 66 ~~lnA~~-~gv~dir~ii~~a~~~~-~~~~tilfiDEIHRfnK~QQD~LLp~vE~--g~iiLIgATTENP~f~in~aLlS 141 (417)
T PRK13342 66 EALSAVT-SGVKDLREVIEEAKQSR-LGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLS 141 (417)
T ss_pred EEEECCC-CCHHHHHHHHHHHHHHH-CCCCEEEEEECHHHCCHHHHHHHHHHHHC--CCEEEEEECCCCCHHHCCHHHHH
T ss_conf 9961410-38899999999988631-48965999978200588999999875112--65699974157922534898985
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH--CCCCHHHHHHCC
Q ss_conf 43332102454001356787643101-----34562566445653167642001100011100000--012103220001
Q 537021.9.peg.4 156 RCQRFDLHRISIGDLIELFTKILQEE-----SIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN--DKIVTSSVRLML 228 (369)
Q Consensus 156 Rcq~~~f~~l~~~~i~~~L~~i~~~E-----~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~--~~i~~e~v~~ll 228 (369)
T Consensus 142 Rc~vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~~~~~~~~~i~~~~~~~~~ 221 (417)
T PRK13342 142 RAQVFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAAAAAAGGEVITLELLEEAL 221 (417)
T ss_pred HHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 65700205899999999999999877433788776999999999814985999999999998525899734899999998
Q ss_pred CCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 356----------7777788887630136334678876543047621357877753
Q 537021.9.peg.4 229 ALA----------DRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAE 274 (369)
Q Consensus 229 g~~----------~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~ 274 (369)
T Consensus 222 ~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRLii 277 (417)
T PRK13342 222 QRRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI 277 (417)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 44103577786347899999999851699548999999999759997999999999