HHsearch alignment for GI: peg_472 and conserved domain: PRK13531
>PRK13531 regulatory ATPase RavA; Provisional.
Probab=96.77 E-value=0.0052 Score=42.31 Aligned_cols=141 Identities=21% Similarity=0.213 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 89999999999828767062010787988889999999996146877788665878999779999779877822245332
Q 537021.9.peg.4 5 KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAAS 84 (369)
Q Consensus 5 ~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s 84 (369)
T Consensus 26 e~~i~l~lLaalag--eh-vlllGPPGtAKS~larrl~~~~-~~a~~F-------------eyLltRFstPe--ElF--- 83 (498)
T PRK13531 26 SHAIRLCLLAALSG--ES-VFLLGPPGIAKSLIARRLKFAF-QHARAF-------------EYLMTRFSTPE--EVF--- 83 (498)
T ss_pred HHHHHHHHHHHHCC--CC-EEEECCCCHHHHHHHHHHHHHH-CCCHHH-------------HHHHHCCCCHH--HHC---
T ss_conf 99999999999728--94-6988899513889999999985-574089-------------99987469888--853---
Q ss_pred CCCHHHHHHHHHH-HHHHHHCC---CCCEEEEECHHHCCCCHHHHHHHHHHHCC----------CCCCEEEEECC-CC--
Q ss_conf 2334555665554-45654204---65237751156648001678999997212----------21114665067-54--
Q 537021.9.peg.4 85 HTSIDDVREIIDQ-IYYKPISA---RFRVYIMDEVQMLSTAAFNGLLKTLEEPP----------PHVKFIFATTE-IR-- 147 (369)
Q Consensus 85 ~~~id~ir~l~~~-~~~~p~~~---~~kv~iid~a~~m~~~a~NaLLK~lEEPp----------~~~~fil~t~~-~~-- 147 (369)
T Consensus 84 --GP~si~~Lk~~g~y~R~t~G~LP~A~iaFLDEIfKansAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~~ 161 (498)
T PRK13531 84 --GPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEAD 161 (498)
T ss_pred --CCCCHHHHHHCCEEEEECCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCCC
T ss_conf --833299871178489722675886613157878614889999999986464034798313044688643046799998
Q ss_pred CCCHHHHHHHH-HHHCCCCCCHH
Q ss_conf 33035675433-32102454001
Q 537021.9.peg.4 148 KIPITVLSRCQ-RFDLHRISIGD 169 (369)
Q Consensus 148 ~ll~TI~SRcq-~~~f~~l~~~~ 169 (369)
T Consensus 162 ~~L~AlyDRfL~R~~v~~v~~~~ 184 (498)
T PRK13531 162 SSLEALYDRMLIRLWLDKVQDKA 184 (498)
T ss_pred CCHHHHHHHHHHHEECCCCCCHH
T ss_conf 40788887644102231316766