HHsearch alignment for GI: peg_472 and conserved domain: PRK13853
>PRK13853 type IV secretion system protein VirB4; Provisional.
Probab=97.59 E-value=0.0067 Score=41.50 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=19.8
Q ss_pred CCCCCEEEHHCCCCCCCHHHHHHHHHH
Q ss_conf 287670620107879888899999999
Q 537021.9.peg.4 17 SGRIAQSYMLSGTRGIGKTTTARIIAR 43 (369)
Q Consensus 17 ~~~~~ha~lf~G~~G~GK~~~a~~~A~ 43 (369)
T Consensus 423 ~~d~GHt-~I~G~TGsGKTtll~fL~a 448 (789)
T PRK13853 423 EHDVGMT-AIFGPIGRGKTTLMTFILA 448 (789)
T ss_pred CCCCCCE-EEECCCCCCHHHHHHHHHH
T ss_conf 7887744-8878999988999999999