HHsearch alignment for GI: peg_472 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=92.68  E-value=0.16  Score=31.42  Aligned_cols=39  Identities=36%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHH-HHHHHHHHH
Q ss_conf             48999999999982876706201078798888-999999999
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKT-TTARIIARS   44 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~-~~a~~~A~~   44 (369)
T Consensus        14 QP~AI~~L~~~l~~G~~~--QtLLGvTGsGKTFT~AnVIa~~   53 (667)
T TIGR00631        14 QPKAIAKLVEGLEAGEKE--QTLLGVTGSGKTFTMANVIAQV   53 (667)
T ss_pred             HHHHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHHHH
T ss_conf             189999999998568871--4785321486278898999984