HHsearch alignment for GI: peg_472 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=92.68 E-value=0.16 Score=31.42 Aligned_cols=39 Identities=36% Similarity=0.486 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHH-HHHHHHHHH
Q ss_conf 48999999999982876706201078798888-999999999
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKT-TTARIIARS 44 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~-~~a~~~A~~ 44 (369)
T Consensus 14 QP~AI~~L~~~l~~G~~~--QtLLGvTGsGKTFT~AnVIa~~ 53 (667)
T TIGR00631 14 QPKAIAKLVEGLEAGEKE--QTLLGVTGSGKTFTMANVIAQV 53 (667)
T ss_pred HHHHHHHHHHHHHCCCCC--EEEEEEECCCHHHHHHHHHHHH
T ss_conf 189999999998568871--4785321486278898999984