HHsearch alignment for GI: peg_472 and conserved domain: TIGR01128

>TIGR01128 holA DNA polymerase III, delta subunit; InterPro: IPR005790 DNA polymerase III delta (holA, ) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex sub-assembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. Both delta and delta prime are monomeric in their native state, and they bind each other tightly to form a 1:1 complex. Neither delta nor delta prime alone binds tightly to the gamma subunit . ; GO: 0003677 DNA binding, 0003891 delta DNA polymerase activity, 0006260 DNA replication, 0043625 delta DNA polymerase complex.
Probab=99.39  E-value=1.8e-10  Score=97.29  Aligned_cols=299  Identities=18%  Similarity=0.233  Sum_probs=240.8

Q ss_pred             CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4   21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY  100 (369)
Q Consensus        21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~  100 (369)
T Consensus         2 ~~~y~~~G~~~~l~~~~~~~~~~~~~-~~~~~-~---------------------~~~~~~~----~~~~~~~~~~~~~~   54 (331)
T TIGR01128         2 APVYLLYGDEPLLLEEAADAIRAAAL-PGFDE-F---------------------NLFTIDG----EEFDWGQLLESAQT   54 (331)
T ss_pred             CCCEEECCCCHHHHHHHHHHHHHHHC-CCCHH-H---------------------HHHHCCC----CCCHHHHHHHHHHH
T ss_conf             64035406405578999999998740-24201-2---------------------2321033----20037788877641


Q ss_pred             HHHCCCCCEEEEECHHHC-CCCH-----HHHHHHHHHHCCCCCCEEEEEC--CCC------CCCH-HHHH-HHHHHHCCC
Q ss_conf             542046523775115664-8001-----6789999972122111466506--754------3303-5675-433321024
Q 537021.9.peg.4  101 KPISARFRVYIMDEVQML-STAA-----FNGLLKTLEEPPPHVKFIFATT--EIR------KIPI-TVLS-RCQRFDLHR  164 (369)
Q Consensus       101 ~p~~~~~kv~iid~a~~m-~~~a-----~NaLLK~lEEPp~~~~fil~t~--~~~------~ll~-TI~S-Rcq~~~f~~  164 (369)
T Consensus        55 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (331)
T TIGR01128        55 LPLFSERRLVELRLPSGLPGAKGKLEHLLKALLEYLANPPPDTLLLIEAPYEKLDKRKKLTKWLKKALDNKNAEIVECKT  134 (331)
T ss_pred             CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf             35544440566533334344100256679999987314676537887416301345677776766654321012310234


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CC-CCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             5400135678764310134562566445653167642001100011100000-01-210322000135677777888876
Q 537021.9.peg.4  165 ISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DK-IVTSSVRLMLALADRNRIMDLFGY  242 (369)
Q Consensus       165 l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~-i~~e~v~~llg~~~~~~i~~Ll~a  242 (369)
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~kl~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~a  214 (331)
T TIGR01128       135 PDEQELPRWIQARLKELGLRIDPDAVQLLAELVEGNLLALAQELEKLALLAPDGEPITLEDVEEAVSDSARFNVFDLTDA  214 (331)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             43556689999999970786545899999987253078888777777752378766688999988533114667889998


Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----------CCCC-CCHHHHHHHHHHHHHCCH
Q ss_conf             30136334678876543047621357877753489999997457412----------2344-998899999999862998
Q 537021.9.peg.4  243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA----------DTLL-YSEAENARALQYSKEVSI  311 (369)
Q Consensus       243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~----------~~~~-~~~~e~~~i~~~a~~i~~  311 (369)
T Consensus       215 ~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (331)
T TIGR01128       215 LLEGKAARALRILDGLLGEGEEPLILLALLQRQLRLLLQLKILAQAGLTGKPLAQLASKLGPIWPYRRKLALKALRRLSL  294 (331)
T ss_pred             HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
T ss_conf             86043899999999887404115789999999999999988877630022108899987336550356778999850577


Q ss_pred             HHHHHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHH
Q ss_conf             999999999999999830-27-888999999999995
Q 537021.9.peg.4  312 TFLSRFWQMILKGISEIE-GF-SRPMEAVEMVLIRLA  346 (369)
Q Consensus       312 ~~L~~~lq~l~~a~~~Lk-~n-~np~L~lE~lLlkL~  346 (369)
T Consensus       295 ~~l~~~~~~l~~~~~~~k~~~~~~~~~~l~~l~~~~~  331 (331)
T TIGR01128       295 AKLEQALQELAEADLQLKGTGLGDPWLELELLLLKLA  331 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             8899999999998998502456525789999876309