HHsearch alignment for GI: peg_472 and conserved domain: TIGR01128
>TIGR01128 holA DNA polymerase III, delta subunit; InterPro: IPR005790 DNA polymerase III delta (holA, ) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex sub-assembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. Both delta and delta prime are monomeric in their native state, and they bind each other tightly to form a 1:1 complex. Neither delta nor delta prime alone binds tightly to the gamma subunit . ; GO: 0003677 DNA binding, 0003891 delta DNA polymerase activity, 0006260 DNA replication, 0043625 delta DNA polymerase complex.
Probab=99.39 E-value=1.8e-10 Score=97.29 Aligned_cols=299 Identities=18% Similarity=0.233 Sum_probs=240.8
Q ss_pred CEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 70620107879888899999999961468777886658789997799997798778222453322334555665554456
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASHTSIDDVREIIDQIYY 100 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~~~id~ir~l~~~~~~ 100 (369)
T Consensus 2 ~~~y~~~G~~~~l~~~~~~~~~~~~~-~~~~~-~---------------------~~~~~~~----~~~~~~~~~~~~~~ 54 (331)
T TIGR01128 2 APVYLLYGDEPLLLEEAADAIRAAAL-PGFDE-F---------------------NLFTIDG----EEFDWGQLLESAQT 54 (331)
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHHC-CCCHH-H---------------------HHHHCCC----CCCHHHHHHHHHHH
T ss_conf 64035406405578999999998740-24201-2---------------------2321033----20037788877641
Q ss_pred HHHCCCCCEEEEECHHHC-CCCH-----HHHHHHHHHHCCCCCCEEEEEC--CCC------CCCH-HHHH-HHHHHHCCC
Q ss_conf 542046523775115664-8001-----6789999972122111466506--754------3303-5675-433321024
Q 537021.9.peg.4 101 KPISARFRVYIMDEVQML-STAA-----FNGLLKTLEEPPPHVKFIFATT--EIR------KIPI-TVLS-RCQRFDLHR 164 (369)
Q Consensus 101 ~p~~~~~kv~iid~a~~m-~~~a-----~NaLLK~lEEPp~~~~fil~t~--~~~------~ll~-TI~S-Rcq~~~f~~ 164 (369)
T Consensus 55 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (331)
T TIGR01128 55 LPLFSERRLVELRLPSGLPGAKGKLEHLLKALLEYLANPPPDTLLLIEAPYEKLDKRKKLTKWLKKALDNKNAEIVECKT 134 (331)
T ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf 35544440566533334344100256679999987314676537887416301345677776766654321012310234
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHH-CC-CCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 5400135678764310134562566445653167642001100011100000-01-210322000135677777888876
Q 537021.9.peg.4 165 ISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCN-DK-IVTSSVRLMLALADRNRIMDLFGY 242 (369)
Q Consensus 165 l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~-~~-i~~e~v~~llg~~~~~~i~~Ll~a 242 (369)
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~kl~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~a 214 (331)
T TIGR01128 135 PDEQELPRWIQARLKELGLRIDPDAVQLLAELVEGNLLALAQELEKLALLAPDGEPITLEDVEEAVSDSARFNVFDLTDA 214 (331)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 43556689999999970786545899999987253078888777777752378766688999988533114667889998
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC----------CCCC-CCHHHHHHHHHHHHHCCH
Q ss_conf 30136334678876543047621357877753489999997457412----------2344-998899999999862998
Q 537021.9.peg.4 243 LIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA----------DTLL-YSEAENARALQYSKEVSI 311 (369)
Q Consensus 243 i~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~----------~~~~-~~~~e~~~i~~~a~~i~~ 311 (369)
T Consensus 215 ~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (331)
T TIGR01128 215 LLEGKAARALRILDGLLGEGEEPLILLALLQRQLRLLLQLKILAQAGLTGKPLAQLASKLGPIWPYRRKLALKALRRLSL 294 (331)
T ss_pred HHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
T ss_conf 86043899999999887404115789999999999999988877630022108899987336550356778999850577
Q ss_pred HHHHHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHH
Q ss_conf 999999999999999830-27-888999999999995
Q 537021.9.peg.4 312 TFLSRFWQMILKGISEIE-GF-SRPMEAVEMVLIRLA 346 (369)
Q Consensus 312 ~~L~~~lq~l~~a~~~Lk-~n-~np~L~lE~lLlkL~ 346 (369)
T Consensus 295 ~~l~~~~~~l~~~~~~~k~~~~~~~~~~l~~l~~~~~ 331 (331)
T TIGR01128 295 AKLEQALQELAEADLQLKGTGLGDPWLELELLLLKLA 331 (331)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 8899999999998998502456525789999876309