HHsearch alignment for GI: peg_472 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=97.83 E-value=0.00024 Score=52.21 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHCC------------CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 28489999999999828------------767062010787988889999999996146877788665878999779999
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFKSG------------RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAI 69 (369)
Q Consensus 2 iGq~~~~~~l~~~~~~~------------~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i 69 (369)
T Consensus 544 GGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es----~a-nf--------------- 603 (980)
T TIGR01243 544 GGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATES----GA-NF--------------- 603 (980)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCC----CC-CE---------------
T ss_conf 66789999998775234440589986078899734874689861688888774014----56-46---------------
Q ss_pred HCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-------------CCHHHHHHHHHHH--
Q ss_conf 779877822--24533223345556655544565420465237751156648-------------0016789999972--
Q 537021.9.peg.4 70 IRGNHVDVV--ELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-------------TAAFNGLLKTLEE-- 132 (369)
Q Consensus 70 ~~~~~~d~~--e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-------------~~a~NaLLK~lEE-- 132 (369)
T Consensus 604 i~v~GPe~lskWv-Ge---se~~ir~if~~arq~----aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~dG~~ 675 (980)
T TIGR01243 604 IAVRGPEILSKWV-GE---SEKAIREIFRKARQA----APAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELDGLE 675 (980)
T ss_pred EEECCCHHHHHHH-CH---HHHHHHHHHHHHHHC----CCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 7740731223440-32---479999999986412----873787302111054124421001026899999998640443
Q ss_pred CCCCCCEEEEECCCCCCCHHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCHHH
Q ss_conf 12211146650675433035675--433321024540013567876431013456256-64456531676420011
Q 537021.9.peg.4 133 PPPHVKFIFATTEIRKIPITVLS--RCQRFDLHRISIGDLIELFTKILQEESIEFDPE-AVAMIARASDGSARDGL 205 (369)
Q Consensus 133 Pp~~~~fil~t~~~~~ll~TI~S--Rcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~-~l~~ia~~s~GslR~Al 205 (369)
T Consensus 676 ~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~-~~~l~~dv~l~~la~~teGytGadi 750 (980)
T TIGR01243 676 ELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTR-SMPLAEDVDLEELAKKTEGYTGADI 750 (980)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 43665898615887423610048874121686059855676767655311-1353013438999865168763229