HHsearch alignment for GI: peg_472 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=94.34 E-value=0.036 Score=36.17 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=23.1
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 999999828767062010787988889999999996146877
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAH 51 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~ 51 (369)
T Consensus 118 v~~~~a~~~~-G-LiLVTGPTGSGKSTT---lAsmIDyIN~~ 154 (350)
T TIGR01420 118 VLRELAERPR-G-LILVTGPTGSGKSTT---LASMIDYINKN 154 (350)
T ss_pred HHHHHHHCCC-C-CEEEECCCCCCHHHH---HHHHHHHHHCC
T ss_conf 9999983669-9-389876889867899---99999787403