HHsearch alignment for GI: peg_472 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.51 E-value=0.00067 Score=48.91 Aligned_cols=146 Identities=25% Similarity=0.331 Sum_probs=94.0
Q ss_pred EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----CCCCHHHHHHHHHH
Q ss_conf 06201078798888999999999614687778866587899977999977987782224533----22334555665554
Q 537021.9.peg.4 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA----SHTSIDDVREIIDQ 97 (369)
Q Consensus 22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~----s~~~id~ir~l~~~ 97 (369)
T Consensus 60 h-m~ftG~PGtGkttva~~m~~~l~~lGy------------------~r~G~~~~~trddlvGqy~Ght-aPktke~lk- 118 (284)
T TIGR02880 60 H-MSFTGNPGTGKTTVALRMAQILHRLGY------------------VRKGHLVSVTRDDLVGQYIGHT-APKTKEVLK- 118 (284)
T ss_pred E-EEECCCCCCCHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEHHHHHHHHHCCC-CCHHHHHHH-
T ss_conf 6-775168987248999999999987154------------------0036267853001311221257-722689998-
Q ss_pred HHHHHHCCCCCEEEEECHHHC---------CCCHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHHHHHH-HHHHC
Q ss_conf 456542046523775115664---------800167899999721221114665067-----543303567543-33210
Q 537021.9.peg.4 98 IYYKPISARFRVYIMDEVQML---------STAAFNGLLKTLEEPPPHVKFIFATTE-----IRKIPITVLSRC-QRFDL 162 (369)
Q Consensus 98 ~~~~p~~~~~kv~iid~a~~m---------~~~a~NaLLK~lEEPp~~~~fil~t~~-----~~~ll~TI~SRc-q~~~f 162 (369)
T Consensus 119 ---~-a~GG--vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~~f~~snPG~~sr~a~h~~f 192 (284)
T TIGR02880 119 ---R-AMGG--VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGLSSRVAHHVDF 192 (284)
T ss_pred ---H-HCCC--EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf ---7-4287--366422033217764102237999999998723655378887170788888751178624677643158
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 24540013567876431013456256644565
Q 537021.9.peg.4 163 HRISIGDLIELFTKILQEESIEFDPEAVAMIA 194 (369)
Q Consensus 163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia 194 (369)
T Consensus 193 Pdy~~~~l~~ia~~~l~~~~y~~~~~~~~~~~ 224 (284)
T TIGR02880 193 PDYSEEELLAIAELMLEEQQYRLSAEAEEALA 224 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 88776789999999886541211188999999