HHsearch alignment for GI: peg_472 and conserved domain: TIGR02880

>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=97.51  E-value=0.00067  Score=48.91  Aligned_cols=146  Identities=25%  Similarity=0.331  Sum_probs=94.0

Q ss_pred             EEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC----CCCCHHHHHHHHHH
Q ss_conf             06201078798888999999999614687778866587899977999977987782224533----22334555665554
Q 537021.9.peg.4   22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA----SHTSIDDVREIIDQ   97 (369)
Q Consensus        22 ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~----s~~~id~ir~l~~~   97 (369)
T Consensus        60 h-m~ftG~PGtGkttva~~m~~~l~~lGy------------------~r~G~~~~~trddlvGqy~Ght-aPktke~lk-  118 (284)
T TIGR02880        60 H-MSFTGNPGTGKTTVALRMAQILHRLGY------------------VRKGHLVSVTRDDLVGQYIGHT-APKTKEVLK-  118 (284)
T ss_pred             E-EEECCCCCCCHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEHHHHHHHHHCCC-CCHHHHHHH-
T ss_conf             6-775168987248999999999987154------------------0036267853001311221257-722689998-


Q ss_pred             HHHHHHCCCCCEEEEECHHHC---------CCCHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHHHHHH-HHHHC
Q ss_conf             456542046523775115664---------800167899999721221114665067-----543303567543-33210
Q 537021.9.peg.4   98 IYYKPISARFRVYIMDEVQML---------STAAFNGLLKTLEEPPPHVKFIFATTE-----IRKIPITVLSRC-QRFDL  162 (369)
Q Consensus        98 ~~~~p~~~~~kv~iid~a~~m---------~~~a~NaLLK~lEEPp~~~~fil~t~~-----~~~ll~TI~SRc-q~~~f  162 (369)
T Consensus       119 ---~-a~GG--vlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~~f~~snPG~~sr~a~h~~f  192 (284)
T TIGR02880       119 ---R-AMGG--VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGLSSRVAHHVDF  192 (284)
T ss_pred             ---H-HCCC--EEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf             ---7-4287--366422033217764102237999999998723655378887170788888751178624677643158


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             24540013567876431013456256644565
Q 537021.9.peg.4  163 HRISIGDLIELFTKILQEESIEFDPEAVAMIA  194 (369)
Q Consensus       163 ~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia  194 (369)
T Consensus       193 Pdy~~~~l~~ia~~~l~~~~y~~~~~~~~~~~  224 (284)
T TIGR02880       193 PDYSEEELLAIAELMLEEQQYRLSAEAEEALA  224 (284)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             88776789999999886541211188999999